Query 015951
Match_columns 397
No_of_seqs 265 out of 1189
Neff 6.7
Searched_HMMs 46136
Date Fri Mar 29 02:25:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2160 Armadillo/beta-catenin 100.0 2.5E-44 5.4E-49 351.3 25.8 325 34-390 6-341 (342)
2 KOG0166 Karyopherin (importin) 99.8 3.5E-19 7.5E-24 183.2 18.9 230 122-358 229-470 (514)
3 KOG0166 Karyopherin (importin) 99.8 3.1E-18 6.7E-23 176.2 17.3 223 128-358 111-335 (514)
4 PLN03200 cellulose synthase-in 99.8 3.8E-17 8.3E-22 189.0 25.0 221 129-358 449-749 (2102)
5 PLN03200 cellulose synthase-in 99.8 5.2E-17 1.1E-21 187.9 24.7 216 141-358 417-665 (2102)
6 COG5064 SRP1 Karyopherin (impo 99.7 1.1E-17 2.4E-22 162.6 13.5 214 121-338 234-450 (526)
7 PF08609 Fes1: Nucleotide exch 99.7 5.1E-18 1.1E-22 138.6 6.7 87 77-165 3-92 (92)
8 COG5064 SRP1 Karyopherin (impo 99.7 1.1E-16 2.3E-21 155.9 11.9 212 141-353 84-335 (526)
9 KOG4224 Armadillo repeat prote 99.7 1.4E-15 3E-20 149.2 18.1 204 142-355 181-387 (550)
10 KOG4224 Armadillo repeat prote 99.6 1.9E-15 4E-20 148.3 10.6 208 142-360 99-308 (550)
11 cd00020 ARM Armadillo/beta-cat 99.5 1.5E-13 3.2E-18 114.3 14.5 118 164-283 2-119 (120)
12 KOG1048 Neural adherens juncti 99.4 1.3E-12 2.7E-17 138.9 15.1 214 170-393 234-471 (717)
13 cd00020 ARM Armadillo/beta-cat 99.4 1.2E-11 2.6E-16 102.8 13.2 118 206-330 2-119 (120)
14 PF05804 KAP: Kinesin-associat 99.3 2.1E-10 4.6E-15 123.9 19.5 194 147-353 268-462 (708)
15 PF10508 Proteasom_PSMB: Prote 99.2 1.7E-09 3.7E-14 113.8 22.8 212 131-355 43-254 (503)
16 PF04826 Arm_2: Armadillo-like 99.2 4.4E-10 9.5E-15 108.3 16.5 175 166-353 9-184 (254)
17 KOG2160 Armadillo/beta-catenin 99.1 5.7E-09 1.2E-13 103.2 19.9 181 149-338 65-247 (342)
18 PF03224 V-ATPase_H_N: V-ATPas 99.1 5.8E-09 1.3E-13 103.2 19.4 236 125-378 57-310 (312)
19 PF04826 Arm_2: Armadillo-like 99.0 5.4E-08 1.2E-12 93.9 19.8 193 125-332 11-206 (254)
20 KOG4199 Uncharacterized conser 99.0 1.1E-07 2.3E-12 93.5 21.4 217 133-358 196-429 (461)
21 KOG4199 Uncharacterized conser 99.0 4.2E-08 9E-13 96.3 18.0 173 161-341 275-453 (461)
22 PF10508 Proteasom_PSMB: Prote 98.9 9.4E-08 2E-12 100.7 20.5 195 109-314 59-255 (503)
23 KOG1293 Proteins containing ar 98.9 3.3E-08 7E-13 103.8 15.3 182 150-338 359-540 (678)
24 cd00256 VATPase_H VATPase_H, r 98.8 2.2E-06 4.7E-11 88.2 25.5 245 125-384 52-310 (429)
25 PF05804 KAP: Kinesin-associat 98.8 9.4E-07 2E-11 95.9 22.1 221 128-362 413-638 (708)
26 KOG0168 Putative ubiquitin fus 98.7 2.8E-06 6E-11 91.6 23.1 241 121-377 162-409 (1051)
27 KOG2122 Beta-catenin-binding p 98.4 4.8E-06 1E-10 93.7 14.1 212 148-361 371-589 (2195)
28 PRK09687 putative lyase; Provi 98.3 3E-05 6.4E-10 76.0 15.7 169 128-330 25-220 (280)
29 PF08045 CDC14: Cell division 98.3 1.3E-05 2.8E-10 77.2 12.8 103 182-284 104-207 (257)
30 KOG0946 ER-Golgi vesicle-tethe 98.3 9.6E-05 2.1E-09 79.5 20.2 204 124-332 59-297 (970)
31 KOG1048 Neural adherens juncti 98.2 1.4E-05 3.1E-10 85.8 13.5 135 212-357 234-369 (717)
32 PF12348 CLASP_N: CLASP N term 98.2 1.2E-05 2.5E-10 75.5 11.5 186 136-334 15-209 (228)
33 PF00514 Arm: Armadillo/beta-c 98.2 4.1E-06 8.9E-11 57.8 5.7 41 200-240 1-41 (41)
34 PRK09687 putative lyase; Provi 98.2 2.7E-05 5.8E-10 76.3 13.6 157 141-331 67-250 (280)
35 PF13513 HEAT_EZ: HEAT-like re 98.1 8E-06 1.7E-10 59.7 5.9 55 183-238 1-55 (55)
36 KOG2759 Vacuolar H+-ATPase V1 98.1 0.00031 6.7E-09 71.3 18.9 243 125-383 64-322 (442)
37 PF13646 HEAT_2: HEAT repeats; 98.0 1.8E-05 3.9E-10 62.7 7.0 87 171-280 1-88 (88)
38 KOG1517 Guanine nucleotide bin 98.0 0.00044 9.5E-09 76.5 18.7 202 122-333 468-673 (1387)
39 KOG4500 Rho/Rac GTPase guanine 97.9 8.5E-05 1.8E-09 75.5 11.4 183 167-354 85-275 (604)
40 PRK13800 putative oxidoreducta 97.9 0.00064 1.4E-08 76.7 19.5 27 255-283 777-803 (897)
41 PRK13800 putative oxidoreducta 97.9 0.0006 1.3E-08 76.9 18.7 131 171-329 716-865 (897)
42 PF09759 Atx10homo_assoc: Spin 97.9 6.7E-05 1.5E-09 62.5 8.3 67 185-251 2-70 (102)
43 PF00514 Arm: Armadillo/beta-c 97.9 1.4E-05 3.1E-10 55.0 3.4 38 160-197 3-40 (41)
44 KOG4500 Rho/Rac GTPase guanine 97.8 0.00018 3.9E-09 73.2 12.1 148 179-332 52-210 (604)
45 KOG2171 Karyopherin (importin) 97.8 0.00079 1.7E-08 75.2 17.9 174 171-357 346-525 (1075)
46 PF11698 V-ATPase_H_C: V-ATPas 97.8 2.3E-05 5E-10 66.9 4.7 101 81-200 16-117 (119)
47 PF03224 V-ATPase_H_N: V-ATPas 97.8 0.00027 5.9E-09 70.0 12.9 187 127-322 106-305 (312)
48 PF01602 Adaptin_N: Adaptin N 97.7 0.002 4.4E-08 67.4 18.4 203 107-336 22-226 (526)
49 PF01602 Adaptin_N: Adaptin N 97.7 0.0022 4.8E-08 67.1 18.5 161 140-329 18-179 (526)
50 PF05536 Neurochondrin: Neuroc 97.7 0.003 6.4E-08 67.5 19.3 152 124-284 3-168 (543)
51 KOG0168 Putative ubiquitin fus 97.7 0.0015 3.3E-08 71.1 16.8 220 131-360 216-441 (1051)
52 KOG3678 SARM protein (with ste 97.6 0.00094 2E-08 68.7 13.2 176 167-353 178-356 (832)
53 KOG0946 ER-Golgi vesicle-tethe 97.6 0.0039 8.5E-08 67.6 18.4 219 121-351 17-260 (970)
54 KOG2122 Beta-catenin-binding p 97.6 0.00069 1.5E-08 77.0 12.5 181 147-334 413-604 (2195)
55 KOG1293 Proteins containing ar 97.5 0.0006 1.3E-08 72.3 10.5 140 141-284 390-533 (678)
56 smart00185 ARM Armadillo/beta- 97.4 0.00034 7.4E-09 47.3 4.7 39 160-198 3-41 (41)
57 cd00256 VATPase_H VATPase_H, r 97.4 0.011 2.3E-07 61.3 17.4 157 171-334 55-219 (429)
58 KOG2171 Karyopherin (importin) 97.4 0.008 1.7E-07 67.5 17.4 179 141-330 361-548 (1075)
59 PTZ00429 beta-adaptin; Provisi 97.3 0.031 6.8E-07 61.8 21.8 165 141-333 45-210 (746)
60 KOG2759 Vacuolar H+-ATPase V1 97.3 0.0079 1.7E-07 61.3 15.7 203 123-332 152-439 (442)
61 COG5369 Uncharacterized conser 97.3 0.00068 1.5E-08 70.6 8.0 141 187-334 407-548 (743)
62 smart00185 ARM Armadillo/beta- 97.2 0.00089 1.9E-08 45.2 5.4 39 201-239 2-40 (41)
63 PF13646 HEAT_2: HEAT repeats; 97.2 0.0012 2.7E-08 52.0 6.8 86 213-327 1-88 (88)
64 PF09759 Atx10homo_assoc: Spin 97.1 0.0022 4.8E-08 53.5 7.5 66 146-211 4-72 (102)
65 PF14664 RICTOR_N: Rapamycin-i 97.1 0.025 5.3E-07 57.7 16.6 186 138-333 78-271 (371)
66 KOG4646 Uncharacterized conser 97.1 0.0093 2E-07 52.4 11.4 109 141-250 30-138 (173)
67 PTZ00429 beta-adaptin; Provisi 97.1 0.059 1.3E-06 59.6 20.5 205 107-332 48-286 (746)
68 KOG1222 Kinesin associated pro 97.0 0.067 1.5E-06 55.7 18.4 190 158-356 334-602 (791)
69 TIGR02270 conserved hypothetic 96.9 0.014 3E-07 60.3 13.2 153 126-330 54-206 (410)
70 KOG1789 Endocytosis protein RM 96.9 0.033 7.2E-07 62.3 16.2 136 144-286 1741-1885(2235)
71 KOG4646 Uncharacterized conser 96.9 0.011 2.4E-07 52.0 10.1 127 171-306 18-145 (173)
72 KOG4413 26S proteasome regulat 96.8 0.021 4.5E-07 56.8 12.7 154 171-332 84-244 (524)
73 PF05536 Neurochondrin: Neuroc 96.7 0.079 1.7E-06 56.7 17.7 156 170-334 6-171 (543)
74 PF11841 DUF3361: Domain of un 96.7 0.025 5.4E-07 50.9 11.5 121 161-284 3-131 (160)
75 PF11698 V-ATPase_H_C: V-ATPas 96.7 0.003 6.6E-08 54.0 5.4 72 170-241 44-116 (119)
76 PF06371 Drf_GBD: Diaphanous G 96.6 0.045 9.8E-07 49.5 13.0 112 212-330 67-186 (187)
77 KOG0213 Splicing factor 3b, su 96.6 0.033 7.2E-07 60.4 13.4 142 175-332 805-955 (1172)
78 COG5096 Vesicle coat complex, 96.6 0.045 9.8E-07 60.1 14.7 164 142-332 33-196 (757)
79 KOG1517 Guanine nucleotide bin 96.6 0.02 4.4E-07 63.9 12.0 126 158-285 543-672 (1387)
80 PF05004 IFRD: Interferon-rela 96.5 0.21 4.5E-06 49.7 17.7 196 128-332 45-258 (309)
81 KOG3678 SARM protein (with ste 96.5 0.051 1.1E-06 56.3 13.2 155 128-286 182-338 (832)
82 COG5369 Uncharacterized conser 96.4 0.022 4.7E-07 59.8 10.1 167 169-340 431-603 (743)
83 TIGR02270 conserved hypothetic 96.3 0.48 1E-05 49.1 19.6 89 126-238 117-205 (410)
84 PF13513 HEAT_EZ: HEAT-like re 96.3 0.007 1.5E-07 44.0 4.5 54 226-282 2-55 (55)
85 PF14664 RICTOR_N: Rapamycin-i 96.2 0.35 7.6E-06 49.4 18.0 178 142-332 39-227 (371)
86 KOG1241 Karyopherin (importin) 96.1 0.28 6E-06 53.6 17.2 179 176-358 371-556 (859)
87 KOG1789 Endocytosis protein RM 96.1 0.36 7.8E-06 54.5 18.1 93 142-236 1786-1879(2235)
88 COG5181 HSH155 U2 snRNP splice 96.1 0.02 4.3E-07 61.0 8.3 146 172-332 607-760 (975)
89 PF11841 DUF3361: Domain of un 96.1 0.099 2.2E-06 47.1 11.7 126 204-335 4-135 (160)
90 COG1413 FOG: HEAT repeat [Ener 96.1 0.41 8.8E-06 47.4 17.5 156 127-332 44-210 (335)
91 KOG1222 Kinesin associated pro 96.1 0.13 2.8E-06 53.7 13.8 193 107-311 233-434 (791)
92 PF04078 Rcd1: Cell differenti 96.0 0.17 3.6E-06 49.0 13.6 196 141-341 8-227 (262)
93 KOG1824 TATA-binding protein-i 95.9 0.54 1.2E-05 52.6 18.4 153 185-354 149-304 (1233)
94 PF02985 HEAT: HEAT repeat; I 95.9 0.012 2.5E-07 38.1 3.7 29 171-199 2-30 (31)
95 PF12348 CLASP_N: CLASP N term 95.9 0.13 2.8E-06 48.0 12.2 132 146-284 71-206 (228)
96 KOG2023 Nuclear transport rece 95.8 0.14 3E-06 55.2 13.0 151 124-284 126-285 (885)
97 PF10165 Ric8: Guanine nucleot 95.8 0.067 1.5E-06 55.9 10.8 134 148-284 1-168 (446)
98 PF05918 API5: Apoptosis inhib 95.8 0.044 9.5E-07 58.4 9.2 84 171-265 25-108 (556)
99 KOG1991 Nuclear transport rece 95.6 1.8 3.8E-05 48.7 20.7 120 127-249 411-541 (1010)
100 KOG2973 Uncharacterized conser 95.5 2.8 6.1E-05 41.7 19.9 231 129-373 6-309 (353)
101 COG5096 Vesicle coat complex, 95.5 0.99 2.1E-05 49.9 18.3 160 107-284 35-195 (757)
102 KOG2259 Uncharacterized conser 95.3 0.17 3.6E-06 54.5 11.4 208 142-361 193-470 (823)
103 PF08045 CDC14: Cell division 95.3 0.2 4.2E-06 48.6 11.0 102 143-244 106-211 (257)
104 KOG1824 TATA-binding protein-i 95.3 0.45 9.8E-06 53.2 14.8 183 125-335 816-1040(1233)
105 PF12717 Cnd1: non-SMC mitotic 95.3 0.52 1.1E-05 42.8 13.3 90 182-284 1-92 (178)
106 PF04078 Rcd1: Cell differenti 95.2 0.45 9.9E-06 46.1 13.1 170 123-299 39-227 (262)
107 KOG2734 Uncharacterized conser 95.2 3.5 7.7E-05 42.8 20.0 223 145-373 101-357 (536)
108 KOG1242 Protein containing ada 95.1 0.9 2E-05 48.5 16.0 172 143-332 269-445 (569)
109 cd03561 VHS VHS domain family; 95.0 0.57 1.2E-05 40.6 12.3 72 172-243 40-115 (133)
110 PF12755 Vac14_Fab1_bd: Vacuol 94.9 0.12 2.6E-06 42.6 7.4 67 169-239 27-95 (97)
111 KOG2023 Nuclear transport rece 94.9 0.57 1.2E-05 50.7 14.0 179 146-334 637-820 (885)
112 PF02985 HEAT: HEAT repeat; I 94.9 0.052 1.1E-06 35.0 4.0 30 212-241 1-30 (31)
113 COG1413 FOG: HEAT repeat [Ener 94.8 0.44 9.6E-06 47.1 12.5 93 169-284 43-135 (335)
114 KOG1062 Vesicle coat complex A 94.7 0.67 1.4E-05 51.0 14.2 186 120-333 65-265 (866)
115 KOG1241 Karyopherin (importin) 94.7 0.24 5.3E-06 54.0 10.8 153 169-332 319-478 (859)
116 KOG1061 Vesicle coat complex A 94.7 0.77 1.7E-05 50.2 14.6 163 143-333 28-191 (734)
117 PF08569 Mo25: Mo25-like; Int 94.6 2.2 4.7E-05 43.0 16.9 151 182-338 136-290 (335)
118 PF12755 Vac14_Fab1_bd: Vacuol 94.6 0.37 8.1E-06 39.7 9.5 93 186-283 3-95 (97)
119 smart00288 VHS Domain present 94.4 0.77 1.7E-05 39.9 11.7 106 112-242 5-113 (133)
120 PF12717 Cnd1: non-SMC mitotic 94.4 1.6 3.4E-05 39.6 14.2 89 143-241 3-93 (178)
121 KOG3036 Protein involved in ce 94.4 5.2 0.00011 38.7 17.8 189 143-341 39-256 (293)
122 KOG1059 Vesicle coat complex A 94.3 0.91 2E-05 49.5 13.9 108 170-284 182-365 (877)
123 PF12719 Cnd3: Nuclear condens 94.2 1.8 3.8E-05 42.6 15.1 109 169-284 26-143 (298)
124 PF12460 MMS19_C: RNAPII trans 94.2 0.47 1E-05 48.9 11.5 109 171-284 273-394 (415)
125 KOG3036 Protein involved in ce 94.2 2.6 5.6E-05 40.7 15.2 159 124-284 69-247 (293)
126 KOG4413 26S proteasome regulat 94.1 1.6 3.4E-05 43.9 14.1 171 143-321 97-274 (524)
127 PF06025 DUF913: Domain of Unk 94.1 1.7 3.7E-05 44.6 15.1 83 182-265 122-208 (379)
128 COG5231 VMA13 Vacuolar H+-ATPa 94.1 0.83 1.8E-05 45.6 12.1 169 157-331 222-428 (432)
129 PF06371 Drf_GBD: Diaphanous G 93.9 0.18 3.8E-06 45.6 6.8 104 131-239 71-186 (187)
130 KOG1062 Vesicle coat complex A 93.8 6 0.00013 43.8 18.9 184 142-332 308-545 (866)
131 cd03569 VHS_Hrs_Vps27p VHS dom 93.7 1.2 2.5E-05 39.3 11.4 73 170-242 42-116 (142)
132 PF10165 Ric8: Guanine nucleot 93.5 0.61 1.3E-05 48.8 10.8 125 232-362 2-140 (446)
133 PF13251 DUF4042: Domain of un 93.5 1.2 2.5E-05 41.1 11.4 142 184-334 1-177 (182)
134 PF14668 RICTOR_V: Rapamycin-i 93.5 0.36 7.9E-06 37.8 6.9 63 186-250 4-67 (73)
135 cd03568 VHS_STAM VHS domain fa 93.1 1.4 3.1E-05 38.9 11.0 71 173-243 41-113 (144)
136 KOG2734 Uncharacterized conser 93.1 0.91 2E-05 47.0 10.8 130 241-376 113-252 (536)
137 KOG1058 Vesicle coat complex C 93.0 4.3 9.2E-05 44.8 16.1 154 112-278 25-195 (948)
138 KOG0567 HEAT repeat-containing 92.9 8.2 0.00018 37.7 16.5 29 170-198 68-98 (289)
139 PF12031 DUF3518: Domain of un 92.8 0.47 1E-05 45.5 7.9 54 172-225 175-230 (257)
140 PF11701 UNC45-central: Myosin 92.8 0.46 9.9E-06 42.5 7.5 147 170-327 4-155 (157)
141 KOG2956 CLIP-associating prote 92.7 9.4 0.0002 40.0 17.6 190 124-332 284-478 (516)
142 KOG0212 Uncharacterized conser 92.7 4.3 9.2E-05 43.4 15.3 103 171-284 338-444 (675)
143 cd03567 VHS_GGA VHS domain fam 92.7 1.5 3.2E-05 38.7 10.4 72 171-242 40-118 (139)
144 KOG2025 Chromosome condensatio 92.5 2 4.3E-05 46.9 12.9 130 142-279 59-188 (892)
145 KOG1059 Vesicle coat complex A 92.3 4 8.7E-05 44.7 14.9 94 145-249 126-219 (877)
146 KOG1820 Microtubule-associated 91.5 4.5 9.8E-05 45.4 14.7 172 142-332 267-444 (815)
147 KOG1240 Protein kinase contain 91.4 6.8 0.00015 45.3 15.8 199 127-334 426-688 (1431)
148 KOG1058 Vesicle coat complex C 91.2 5.7 0.00012 43.9 14.6 30 170-199 135-164 (948)
149 KOG2999 Regulator of Rac1, req 91.1 5.2 0.00011 42.7 13.9 158 122-284 79-242 (713)
150 KOG1242 Protein containing ada 91.0 4.4 9.6E-05 43.4 13.4 146 170-332 97-246 (569)
151 KOG1077 Vesicle coat complex A 90.9 4.5 9.8E-05 44.3 13.4 43 163-205 180-223 (938)
152 KOG0301 Phospholipase A2-activ 90.6 5.8 0.00012 43.2 13.9 141 131-284 549-704 (745)
153 PF00790 VHS: VHS domain; Int 90.5 1.9 4E-05 37.7 8.7 69 172-240 45-118 (140)
154 KOG0212 Uncharacterized conser 90.3 6.4 0.00014 42.1 13.7 141 141-285 263-407 (675)
155 KOG1248 Uncharacterized conser 90.3 8.5 0.00018 44.3 15.5 175 144-331 713-898 (1176)
156 COG5181 HSH155 U2 snRNP splice 90.2 2 4.4E-05 46.3 10.0 70 169-241 688-760 (975)
157 PF10363 DUF2435: Protein of u 90.1 1.3 2.8E-05 36.2 6.8 72 171-244 5-76 (92)
158 KOG1020 Sister chromatid cohes 89.8 8.5 0.00019 45.5 15.2 146 122-285 762-922 (1692)
159 KOG2973 Uncharacterized conser 89.8 1.8 3.9E-05 43.0 8.7 114 213-340 5-120 (353)
160 KOG1248 Uncharacterized conser 89.5 16 0.00035 42.2 16.9 107 173-283 657-766 (1176)
161 KOG1061 Vesicle coat complex A 89.5 7.8 0.00017 42.7 14.0 160 107-284 29-189 (734)
162 PF12460 MMS19_C: RNAPII trans 89.4 19 0.00042 37.1 16.6 137 108-248 253-402 (415)
163 PF11701 UNC45-central: Myosin 89.3 1.2 2.6E-05 39.8 6.7 101 177-280 51-155 (157)
164 KOG2999 Regulator of Rac1, req 88.8 8.3 0.00018 41.3 13.1 156 172-334 86-245 (713)
165 PF06025 DUF913: Domain of Unk 88.7 6.1 0.00013 40.5 12.2 126 125-251 105-243 (379)
166 PF13764 E3_UbLigase_R4: E3 ub 88.6 13 0.00029 41.7 15.5 122 162-284 110-258 (802)
167 PF05918 API5: Apoptosis inhib 88.2 2.5 5.4E-05 45.4 9.2 98 171-280 61-158 (556)
168 PF08167 RIX1: rRNA processing 87.7 7.9 0.00017 34.8 11.0 115 211-332 25-144 (165)
169 PF04869 Uso1_p115_head: Uso1 87.5 8.6 0.00019 38.4 12.1 146 182-331 51-231 (312)
170 KOG0213 Splicing factor 3b, su 87.4 32 0.00069 38.4 16.7 191 127-332 637-829 (1172)
171 KOG1060 Vesicle coat complex A 87.2 8.3 0.00018 42.8 12.4 160 143-331 50-209 (968)
172 KOG1788 Uncharacterized conser 87.1 1 2.2E-05 51.1 5.5 126 232-370 663-802 (2799)
173 PF08167 RIX1: rRNA processing 87.0 8.6 0.00019 34.5 10.8 108 171-284 27-143 (165)
174 COG5209 RCD1 Uncharacterized p 87.0 5.1 0.00011 38.4 9.4 98 144-242 116-220 (315)
175 cd03567 VHS_GGA VHS domain fam 87.0 7.2 0.00016 34.3 10.0 92 229-331 19-116 (139)
176 PF01365 RYDR_ITPR: RIH domain 86.7 2.7 5.8E-05 39.0 7.6 95 183-284 75-169 (207)
177 KOG4535 HEAT and armadillo rep 86.0 2 4.4E-05 45.1 6.7 174 146-329 409-601 (728)
178 PF07814 WAPL: Wings apart-lik 85.8 33 0.00072 34.8 15.6 83 180-263 33-116 (361)
179 cd03565 VHS_Tom1 VHS domain fa 85.8 18 0.0004 31.7 11.9 63 180-242 50-117 (141)
180 PF01347 Vitellogenin_N: Lipop 85.4 6.1 0.00013 42.6 10.6 181 109-325 381-583 (618)
181 smart00638 LPD_N Lipoprotein N 85.3 41 0.00088 36.0 16.7 182 110-326 344-540 (574)
182 KOG2676 Uncharacterized conser 85.2 1 2.2E-05 45.5 4.1 64 188-251 375-440 (478)
183 KOG2259 Uncharacterized conser 85.1 1 2.2E-05 48.8 4.2 75 162-241 366-440 (823)
184 COG5209 RCD1 Uncharacterized p 85.1 8.9 0.00019 36.8 10.0 187 145-341 62-277 (315)
185 smart00638 LPD_N Lipoprotein N 85.1 18 0.0004 38.7 14.0 177 111-322 379-569 (574)
186 KOG1967 DNA repair/transcripti 85.0 2.5 5.3E-05 47.4 7.2 106 170-278 910-1018(1030)
187 COG5231 VMA13 Vacuolar H+-ATPa 84.8 1.4 2.9E-05 44.1 4.7 81 160-240 345-428 (432)
188 cd03561 VHS VHS domain family; 84.8 6.5 0.00014 34.0 8.6 92 229-331 18-112 (133)
189 KOG0414 Chromosome condensatio 84.6 8.5 0.00018 44.4 11.2 142 168-331 917-1064(1251)
190 KOG2274 Predicted importin 9 [ 84.6 24 0.00053 39.8 14.4 126 129-256 574-705 (1005)
191 PF12830 Nipped-B_C: Sister ch 84.2 3.5 7.5E-05 37.8 7.0 69 171-247 10-81 (187)
192 KOG2032 Uncharacterized conser 84.1 35 0.00076 36.1 14.7 119 163-284 248-371 (533)
193 PF14726 RTTN_N: Rotatin, an a 84.1 7.1 0.00015 32.3 8.0 93 184-279 2-95 (98)
194 KOG4653 Uncharacterized conser 84.1 59 0.0013 36.7 17.0 190 124-332 725-919 (982)
195 KOG1991 Nuclear transport rece 83.8 29 0.00064 39.5 14.8 138 187-341 390-542 (1010)
196 PF11707 Npa1: Ribosome 60S bi 83.5 44 0.00095 33.4 15.0 160 171-334 58-240 (330)
197 KOG4535 HEAT and armadillo rep 83.3 4.1 8.8E-05 42.9 7.5 149 179-333 401-561 (728)
198 PF11791 Aconitase_B_N: Aconit 83.2 3.8 8.2E-05 36.6 6.3 105 124-242 20-125 (154)
199 PF01347 Vitellogenin_N: Lipop 83.1 5.1 0.00011 43.2 8.7 167 123-323 428-614 (618)
200 PF11865 DUF3385: Domain of un 83.0 13 0.00028 33.3 9.9 145 170-330 11-156 (160)
201 PF12719 Cnd3: Nuclear condens 83.0 13 0.00029 36.4 11.0 112 211-333 26-145 (298)
202 KOG1943 Beta-tubulin folding c 82.7 27 0.0006 40.1 14.1 141 180-331 555-705 (1133)
203 PF10363 DUF2435: Protein of u 82.2 6.2 0.00013 32.2 6.9 86 126-222 3-88 (92)
204 COG5215 KAP95 Karyopherin (imp 81.9 64 0.0014 35.1 15.7 110 170-285 322-438 (858)
205 PF08569 Mo25: Mo25-like; Int 81.7 47 0.001 33.6 14.4 138 145-284 140-283 (335)
206 KOG2062 26S proteasome regulat 81.7 15 0.00032 40.7 11.2 156 168-362 517-675 (929)
207 KOG3665 ZYG-1-like serine/thre 81.5 23 0.00051 39.3 13.2 122 234-364 494-616 (699)
208 cd03569 VHS_Hrs_Vps27p VHS dom 81.4 10 0.00022 33.4 8.4 93 228-331 21-114 (142)
209 COG5218 YCG1 Chromosome conden 80.7 54 0.0012 35.7 14.7 106 163-276 86-191 (885)
210 KOG1832 HIV-1 Vpr-binding prot 79.3 6.8 0.00015 44.1 7.9 199 158-382 590-824 (1516)
211 KOG2611 Neurochondrin/leucine- 79.3 20 0.00044 37.9 10.9 125 213-346 13-154 (698)
212 KOG1240 Protein kinase contain 78.8 9.8 0.00021 44.1 9.1 106 176-285 429-538 (1431)
213 KOG1967 DNA repair/transcripti 78.8 36 0.00079 38.6 13.2 206 108-324 797-1017(1030)
214 PF05004 IFRD: Interferon-rela 78.5 74 0.0016 31.6 16.5 152 125-283 85-256 (309)
215 KOG2062 26S proteasome regulat 78.5 11 0.00024 41.7 9.0 125 171-319 556-682 (929)
216 smart00288 VHS Domain present 77.9 11 0.00025 32.5 7.6 91 230-331 19-111 (133)
217 KOG4151 Myosin assembly protei 77.2 18 0.0004 40.0 10.4 133 147-283 561-698 (748)
218 PF06012 DUF908: Domain of Unk 77.1 11 0.00024 37.7 8.3 63 184-247 237-304 (329)
219 cd03568 VHS_STAM VHS domain fa 76.7 7.5 0.00016 34.3 6.2 91 230-331 19-110 (144)
220 KOG1943 Beta-tubulin folding c 76.3 41 0.00089 38.8 12.9 153 169-332 341-501 (1133)
221 COG5240 SEC21 Vesicle coat com 76.1 18 0.00039 39.1 9.6 100 179-283 423-554 (898)
222 KOG2611 Neurochondrin/leucine- 76.1 1.2E+02 0.0025 32.5 17.3 178 145-330 80-273 (698)
223 KOG2933 Uncharacterized conser 75.9 19 0.00041 36.0 9.1 144 121-283 83-233 (334)
224 PF04063 DUF383: Domain of unk 74.3 30 0.00065 32.1 9.8 127 178-313 4-158 (192)
225 KOG1077 Vesicle coat complex A 73.3 82 0.0018 35.0 13.8 158 149-334 62-219 (938)
226 PF08324 PUL: PUL domain; Int 73.0 17 0.00037 34.8 8.2 197 77-284 14-231 (268)
227 KOG2137 Protein kinase [Signal 72.7 1.4E+02 0.0031 33.1 15.6 134 167-315 387-521 (700)
228 COG5098 Chromosome condensatio 72.6 41 0.00089 37.3 11.4 142 168-332 890-1038(1128)
229 KOG1566 Conserved protein Mo25 72.3 1.1E+02 0.0024 30.7 16.2 104 227-335 182-290 (342)
230 PF14668 RICTOR_V: Rapamycin-i 71.8 13 0.00027 29.2 5.6 68 228-303 4-71 (73)
231 KOG4151 Myosin assembly protei 71.5 1.8E+02 0.0038 32.6 17.2 161 164-332 499-700 (748)
232 PF14663 RasGEF_N_2: Rapamycin 71.3 12 0.00027 31.6 6.0 40 170-210 9-48 (115)
233 KOG4653 Uncharacterized conser 70.6 2E+02 0.0043 32.8 16.1 169 112-284 729-918 (982)
234 PF14500 MMS19_N: Dos2-interac 70.5 66 0.0014 31.3 11.6 142 174-331 4-153 (262)
235 COG5215 KAP95 Karyopherin (imp 70.3 1.7E+02 0.0037 32.0 17.2 192 125-332 38-251 (858)
236 cd00197 VHS_ENTH_ANTH VHS, ENT 70.0 30 0.00064 28.8 8.0 91 229-330 18-114 (115)
237 PF08389 Xpo1: Exportin 1-like 69.3 16 0.00035 30.9 6.5 80 107-193 67-148 (148)
238 PF04869 Uso1_p115_head: Uso1 69.0 1.3E+02 0.0028 30.1 14.9 144 140-283 50-230 (312)
239 PF12397 U3snoRNP10: U3 small 68.6 64 0.0014 27.0 9.9 67 170-242 7-76 (121)
240 PF14726 RTTN_N: Rotatin, an a 67.7 51 0.0011 27.3 8.7 84 143-227 2-87 (98)
241 COG5656 SXM1 Importin, protein 67.1 2.2E+02 0.0048 32.1 16.7 88 171-263 462-549 (970)
242 PF08324 PUL: PUL domain; Int 67.0 1.2E+02 0.0026 28.9 17.3 177 171-355 65-254 (268)
243 PF00790 VHS: VHS domain; Int 66.9 15 0.00032 32.0 5.8 92 229-331 23-118 (140)
244 COG5116 RPN2 26S proteasome re 66.7 67 0.0014 34.9 11.2 149 176-362 523-672 (926)
245 KOG1243 Protein kinase [Genera 66.7 41 0.00089 37.0 10.0 146 123-284 251-398 (690)
246 KOG0915 Uncharacterized conser 66.7 1.8E+02 0.004 35.1 15.6 210 108-334 941-1163(1702)
247 PF07814 WAPL: Wings apart-lik 66.6 1.5E+02 0.0033 30.0 15.2 89 131-221 26-116 (361)
248 PF13001 Ecm29: Proteasome sta 65.7 23 0.0005 37.6 8.0 81 165-247 366-450 (501)
249 KOG4464 Signaling protein RIC- 65.4 52 0.0011 34.3 9.9 82 181-265 109-199 (532)
250 PF13764 E3_UbLigase_R4: E3 ub 65.2 1.5E+02 0.0031 33.7 14.3 226 121-353 115-384 (802)
251 KOG1060 Vesicle coat complex A 64.4 1.1E+02 0.0023 34.6 12.6 138 177-334 295-461 (968)
252 KOG1243 Protein kinase [Genera 64.3 41 0.00088 37.0 9.4 72 166-240 327-398 (690)
253 PF11707 Npa1: Ribosome 60S bi 63.9 1.6E+02 0.0035 29.3 18.1 159 182-359 39-215 (330)
254 COG5240 SEC21 Vesicle coat com 62.9 42 0.00092 36.4 9.0 93 141-238 444-553 (898)
255 COG5116 RPN2 26S proteasome re 62.8 37 0.00081 36.8 8.6 119 169-311 551-671 (926)
256 KOG1078 Vesicle coat complex C 61.7 36 0.00078 37.9 8.5 133 141-284 367-532 (865)
257 PF08506 Cse1: Cse1; InterPro 61.3 70 0.0015 32.7 10.2 132 181-326 223-370 (370)
258 COG5098 Chromosome condensatio 61.0 63 0.0014 35.9 10.0 105 171-284 301-415 (1128)
259 KOG2274 Predicted importin 9 [ 60.7 3.1E+02 0.0067 31.5 18.0 190 143-347 506-705 (1005)
260 cd03565 VHS_Tom1 VHS domain fa 60.4 1.2E+02 0.0026 26.6 10.5 93 229-331 19-115 (141)
261 KOG0301 Phospholipase A2-activ 60.0 2.8E+02 0.006 30.8 17.0 192 147-356 524-728 (745)
262 KOG1087 Cytosolic sorting prot 59.9 82 0.0018 33.4 10.6 64 174-237 43-109 (470)
263 KOG0211 Protein phosphatase 2A 59.8 1.1E+02 0.0024 34.5 12.0 140 176-331 525-664 (759)
264 KOG0413 Uncharacterized conser 59.0 31 0.00067 39.5 7.5 103 171-284 970-1073(1529)
265 PF08216 CTNNBL: Catenin-beta- 59.0 14 0.00031 31.2 3.9 42 147-188 65-106 (108)
266 PF10521 DUF2454: Protein of u 58.4 1.3E+02 0.0028 29.3 11.3 44 170-213 120-164 (282)
267 KOG2032 Uncharacterized conser 57.5 1.2E+02 0.0027 32.2 11.2 168 209-388 252-431 (533)
268 KOG2956 CLIP-associating prote 57.5 2.6E+02 0.0057 29.7 14.2 143 127-284 330-477 (516)
269 PF14225 MOR2-PAG1_C: Cell mor 57.4 89 0.0019 30.4 9.8 113 164-283 106-253 (262)
270 KOG0211 Protein phosphatase 2A 56.6 2.5E+02 0.0054 31.7 14.1 113 164-283 232-344 (759)
271 PF04063 DUF383: Domain of unk 53.8 38 0.00083 31.4 6.3 109 226-341 10-142 (192)
272 cd00197 VHS_ENTH_ANTH VHS, ENT 53.6 1.3E+02 0.0028 24.9 10.5 66 173-238 41-113 (115)
273 KOG2137 Protein kinase [Signal 50.1 3.2E+02 0.0069 30.4 13.3 118 141-265 402-520 (700)
274 PF12830 Nipped-B_C: Sister ch 49.7 1.5E+02 0.0033 26.9 9.6 66 212-284 9-74 (187)
275 PF08506 Cse1: Cse1; InterPro 49.3 1.8E+02 0.0039 29.7 11.0 94 137-235 264-370 (370)
276 PF14663 RasGEF_N_2: Rapamycin 48.9 1.1E+02 0.0024 25.7 7.9 78 303-384 9-90 (115)
277 PF13251 DUF4042: Domain of un 48.8 39 0.00085 31.1 5.5 69 173-244 105-178 (182)
278 KOG2025 Chromosome condensatio 48.2 3.6E+02 0.0079 30.3 13.2 131 185-334 62-193 (892)
279 PF09758 FPL: Uncharacterised 47.6 1.2E+02 0.0027 27.0 8.2 126 198-328 13-146 (149)
280 cd03562 CID CID (CTD-Interacti 47.5 96 0.0021 25.6 7.3 89 180-280 16-104 (114)
281 KOG2038 CAATT-binding transcri 46.8 4.8E+02 0.01 29.6 14.8 73 212-296 305-377 (988)
282 COG5656 SXM1 Importin, protein 46.6 4.8E+02 0.01 29.5 15.9 151 123-284 368-528 (970)
283 KOG2199 Signal transducing ada 46.5 1.2E+02 0.0025 31.5 8.8 87 131-222 12-99 (462)
284 smart00802 UME Domain in UVSB 46.4 1.2E+02 0.0027 25.3 7.7 71 127-201 12-86 (107)
285 PF10521 DUF2454: Protein of u 46.3 1.4E+02 0.003 29.1 9.3 118 212-330 120-252 (282)
286 PF11791 Aconitase_B_N: Aconit 46.2 1.7E+02 0.0037 26.3 8.8 96 96-197 15-122 (154)
287 PF04510 DUF577: Family of unk 45.8 2.3E+02 0.005 26.0 9.8 89 172-265 6-96 (174)
288 PF13001 Ecm29: Proteasome sta 45.8 1.1E+02 0.0024 32.6 9.0 161 115-284 260-443 (501)
289 PF06012 DUF908: Domain of Unk 45.7 93 0.002 31.1 8.1 75 144-218 238-323 (329)
290 PF12530 DUF3730: Protein of u 44.7 2.8E+02 0.006 26.2 13.5 139 171-331 2-151 (234)
291 KOG0915 Uncharacterized conser 44.5 3.7E+02 0.008 32.7 13.3 133 127-264 1040-1183(1702)
292 KOG1525 Sister chromatid cohes 44.2 39 0.00085 40.0 5.7 149 168-332 258-406 (1266)
293 cd03572 ENTH_epsin_related ENT 44.1 1.5E+02 0.0033 25.5 8.0 91 230-331 20-119 (122)
294 KOG0567 HEAT repeat-containing 42.9 54 0.0012 32.2 5.5 19 178-196 196-214 (289)
295 KOG1078 Vesicle coat complex C 42.2 2E+02 0.0044 32.3 10.3 93 142-239 424-531 (865)
296 smart00567 EZ_HEAT E-Z type HE 42.1 39 0.00084 20.9 3.1 28 184-222 2-29 (30)
297 KOG1020 Sister chromatid cohes 42.1 3.2E+02 0.007 33.2 12.3 136 185-332 1137-1296(1692)
298 KOG1820 Microtubule-associated 41.5 42 0.0009 38.0 5.2 73 171-243 373-446 (815)
299 PF04499 SAPS: SIT4 phosphatas 40.7 49 0.0011 35.0 5.4 42 292-333 52-94 (475)
300 KOG2676 Uncharacterized conser 40.6 34 0.00074 34.9 4.0 63 148-210 376-441 (478)
301 KOG2073 SAP family cell cycle 40.4 2.1E+02 0.0047 32.5 10.5 95 157-263 145-249 (838)
302 PF12783 Sec7_N: Guanine nucle 39.8 2.7E+02 0.0057 24.6 9.8 86 164-252 68-158 (168)
303 KOG1822 Uncharacterized conser 37.6 2.6E+02 0.0056 34.7 10.9 163 170-333 877-1090(2067)
304 PF06685 DUF1186: Protein of u 37.4 3.9E+02 0.0085 25.9 13.2 101 179-299 52-152 (249)
305 KOG0414 Chromosome condensatio 37.4 3E+02 0.0066 32.4 11.1 114 213-335 314-432 (1251)
306 PF08064 UME: UME (NUC010) dom 36.6 2E+02 0.0043 23.8 7.5 70 128-201 13-86 (107)
307 PF08623 TIP120: TATA-binding 36.6 2.3E+02 0.0049 25.9 8.3 76 142-221 41-116 (169)
308 PF01365 RYDR_ITPR: RIH domain 36.5 1.4E+02 0.0031 27.3 7.4 121 200-332 32-170 (207)
309 TIGR00117 acnB aconitate hydra 36.5 1.3E+02 0.0029 34.1 8.0 104 122-239 21-125 (844)
310 KOG3665 ZYG-1-like serine/thre 35.7 2.1E+02 0.0046 31.9 9.6 161 157-323 501-689 (699)
311 cd03572 ENTH_epsin_related ENT 35.5 2.9E+02 0.0062 23.8 8.4 87 192-283 24-118 (122)
312 PF08216 CTNNBL: Catenin-beta- 35.3 61 0.0013 27.4 4.1 39 230-269 65-103 (108)
313 PF03130 HEAT_PBS: PBS lyase H 35.0 17 0.00037 22.5 0.6 26 185-221 1-26 (27)
314 PF06685 DUF1186: Protein of u 34.3 2.1E+02 0.0045 27.7 8.2 72 168-251 72-153 (249)
315 KOG1949 Uncharacterized conser 33.5 4.9E+02 0.011 29.4 11.4 164 176-356 181-353 (1005)
316 KOG2150 CCR4-NOT transcription 33.2 63 0.0014 34.8 4.7 70 90-159 103-191 (575)
317 KOG0413 Uncharacterized conser 32.4 1.8E+02 0.0039 33.7 8.2 107 212-330 577-684 (1529)
318 PF04388 Hamartin: Hamartin pr 32.1 4.9E+02 0.011 28.9 11.6 58 225-283 82-139 (668)
319 PF04388 Hamartin: Hamartin pr 31.5 5.6E+02 0.012 28.4 12.0 71 176-248 77-148 (668)
320 PF14500 MMS19_N: Dos2-interac 31.2 4.8E+02 0.01 25.2 10.3 116 127-244 81-241 (262)
321 cd08050 TAF6 TATA Binding Prot 31.0 3.1E+02 0.0068 27.6 9.2 143 127-282 179-338 (343)
322 PF13925 Katanin_con80: con80 29.5 3.2E+02 0.007 24.4 8.2 84 166-251 25-109 (164)
323 PRK14707 hypothetical protein; 29.0 1.4E+03 0.029 29.6 16.1 177 143-328 810-988 (2710)
324 KOG1791 Uncharacterized conser 28.9 9.4E+02 0.02 29.6 13.3 220 164-389 1434-1730(1758)
325 PF09324 DUF1981: Domain of un 28.6 1.6E+02 0.0034 23.4 5.4 48 211-263 17-65 (86)
326 smart00582 RPR domain present 28.5 1.8E+02 0.0039 24.1 6.0 63 172-244 3-65 (121)
327 TIGR02302 aProt_lowcomp conser 28.1 1.2E+02 0.0027 34.5 6.2 55 100-162 520-587 (851)
328 KOG4524 Uncharacterized conser 27.9 2.7E+02 0.0058 32.2 8.6 92 128-222 805-900 (1014)
329 PF10257 RAI16-like: Retinoic 27.7 6.2E+02 0.013 25.5 10.8 135 167-309 7-179 (353)
330 PF12463 DUF3689: Protein of u 26.3 6.6E+02 0.014 25.1 12.1 129 203-335 1-177 (303)
331 PF09324 DUF1981: Domain of un 26.1 2E+02 0.0044 22.8 5.6 54 300-358 15-69 (86)
332 PF14225 MOR2-PAG1_C: Cell mor 25.6 3.6E+02 0.0078 26.2 8.3 83 109-197 167-253 (262)
333 KOG2199 Signal transducing ada 25.2 2.9E+02 0.0063 28.7 7.6 93 228-331 25-118 (462)
334 PLN03076 ARF guanine nucleotid 25.0 5.7E+02 0.012 31.9 11.2 129 145-284 1109-1253(1780)
335 PF10274 ParcG: Parkin co-regu 24.8 5.6E+02 0.012 23.7 10.7 77 170-248 39-117 (183)
336 PF12074 DUF3554: Domain of un 24.6 6.9E+02 0.015 24.7 13.6 191 127-334 23-238 (339)
337 KOG0803 Predicted E3 ubiquitin 24.3 3.9E+02 0.0085 32.1 9.5 76 128-208 43-119 (1312)
338 KOG2038 CAATT-binding transcri 24.1 3.3E+02 0.0071 30.8 8.2 93 180-282 315-407 (988)
339 KOG2933 Uncharacterized conser 23.8 4.9E+02 0.011 26.3 8.7 109 212-333 89-201 (334)
340 PF12055 DUF3536: Domain of un 23.5 6.1E+02 0.013 25.1 9.3 101 140-246 66-181 (285)
341 PF11894 DUF3414: Protein of u 23.3 2.3E+02 0.005 34.9 7.8 61 184-244 579-643 (1691)
342 PF12911 OppC_N: N-terminal TM 23.1 92 0.002 22.2 2.8 23 4-26 13-35 (56)
343 PF07923 N1221: N1221-like pro 23.1 1.6E+02 0.0035 28.9 5.4 52 212-263 61-126 (293)
344 PF08112 ATP-synt_E_2: ATP syn 23.1 2.6E+02 0.0057 20.5 5.0 40 344-391 7-46 (56)
345 PF11935 DUF3453: Domain of un 22.9 3.5E+02 0.0075 25.7 7.5 77 174-250 48-155 (239)
346 KOG1087 Cytosolic sorting prot 22.7 2.2E+02 0.0048 30.2 6.6 71 212-282 39-110 (470)
347 PF12530 DUF3730: Protein of u 22.7 6.5E+02 0.014 23.7 10.5 73 182-265 97-171 (234)
348 PF12074 DUF3554: Domain of un 22.2 2E+02 0.0043 28.6 6.0 62 141-203 175-240 (339)
349 PF08568 Kinetochor_Ybp2: Unch 21.8 4.4E+02 0.0096 28.8 9.0 79 121-201 16-99 (633)
350 PF12783 Sec7_N: Guanine nucle 21.6 5.6E+02 0.012 22.5 9.4 100 184-284 37-146 (168)
351 PF08454 RIH_assoc: RyR and IP 21.2 1.6E+02 0.0034 24.7 4.2 45 178-222 62-107 (109)
352 PF07539 DRIM: Down-regulated 21.0 96 0.0021 27.3 3.0 91 159-263 6-98 (141)
353 PF07571 DUF1546: Protein of u 20.8 2E+02 0.0043 23.2 4.6 52 182-238 19-76 (92)
354 PLN00094 aconitate hydratase 2 20.5 4.2E+02 0.0091 30.5 8.4 102 122-239 90-192 (938)
355 PF06796 NapE: Periplasmic nit 20.2 1.5E+02 0.0033 22.1 3.4 25 2-26 12-36 (56)
356 PF09450 DUF2019: Domain of un 20.2 78 0.0017 26.6 2.1 24 170-193 48-71 (106)
No 1
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-44 Score=351.27 Aligned_cols=325 Identities=31% Similarity=0.392 Sum_probs=270.5
Q ss_pred CCcccccccccccccCCccccccCcchhhhhhccCCCCCCCCCCChHHHHHHHHHhccccccccCCCCHHHHHHhHHHHH
Q 015951 34 SSSAGLFWSTAKEDEDQPRKAERNDDSTAAAIVNDHDELDGGFSSIDGMLQWAIAKLKETAQDVQRLSPSELKKRQMEIK 113 (397)
Q Consensus 34 ~~~~~~~~~t~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~glLkwsi~~~~~~~~~~~~~s~e~l~~r~~~L~ 113 (397)
+++++++.+||..+.++..+.+- +..++....+ ..|++.|++. ++ +++++|+.
T Consensus 6 ~~~~~~~~~~gl~~ws~~~~~~~----------~~~~~~~~~~--~~~~~~~~~~--~~-------------ke~~k~~~ 58 (342)
T KOG2160|consen 6 GSHVRPPNQEGLLEWSLQLSQSL----------GSRPDIQISG--DLGMAEAKLK--DE-------------KEDRKWLQ 58 (342)
T ss_pred cccccCccccchhhccccccccc----------CCCchhhhcc--chhhhhhhcc--Cc-------------ccchHHHH
Confidence 56778888888888887665111 1011111111 3466666655 11 24677777
Q ss_pred HHHHhcC---------CCCHHHHHHH-HHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCH
Q 015951 114 ELMEKLK---------TPSDAQLIQI-AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT 183 (397)
Q Consensus 114 ea~~~~~---------~~~d~~lmk~-~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~ 183 (397)
++|...+ ++.....|+. ++..+++++.++++|+.||++|+++||+||||++|+++|||++++.+|+++++
T Consensus 59 e~~~~~~e~~k~~~~~~~~~~~~~~~~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~ 138 (342)
T KOG2160|consen 59 ELMQAHTEDQKDFVEDMKVISDVMSMIPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDA 138 (342)
T ss_pred HHHHHhhhhhhhhcccchhHHHHHHhhhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcH
Confidence 7775542 2233445555 67778889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh
Q 015951 184 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 262 (397)
Q Consensus 184 ~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL 262 (397)
++|+.|+|+||+++||||++|+.+++.|++++|+.++++++ ..++.||+||||+++|+|++++..|...+|+.+|..++
T Consensus 139 ~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl 218 (342)
T KOG2160|consen 139 ELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVL 218 (342)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999765 46899999999999999999999999999999999999
Q ss_pred cCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHh
Q 015951 263 GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKD 342 (397)
Q Consensus 263 ~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~ 342 (397)
++++.++++|+||++++++|..+ +......+...|+...+..+..+.+.++.|.++.++..+...-......+..
T Consensus 219 ~~~~~~~~lkrK~~~Ll~~Ll~~-----~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~~~~~~~~~ 293 (342)
T KOG2160|consen 219 QSNNTSVKLKRKALFLLSLLLQE-----DKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLSELSTRKELFVS 293 (342)
T ss_pred HcCCcchHHHHHHHHHHHHHHHh-----hhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHHHhhcchhhhh
Confidence 99878999999999999999974 4455557788899999999999999999999999999988765433335666
Q ss_pred cCChHHHHHHHHHHhHHhhhhhhhhhhHHhHHHHHHHHHHHHHHHhhh
Q 015951 343 FCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLDD 390 (397)
Q Consensus 343 ~~gL~~~L~~Lr~~~~~l~~~e~~~~~~~~l~~~~~e~~~~~~~~~~~ 390 (397)
.++++..++++.+.+.+.+..+++..|++++...+.|+..+|+++++.
T Consensus 294 ~~~l~e~l~~~~q~~~~~~~~~~e~~l~~~l~~~~~e~~~~~~~~~~~ 341 (342)
T KOG2160|consen 294 LLNLEELLKSLIQIISDHAALEEERQLVNSLWEICGEVPSILRKLLGS 341 (342)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhcc
Confidence 788999999999999988888889999999999999999999999975
No 2
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=3.5e-19 Score=183.17 Aligned_cols=230 Identities=17% Similarity=0.216 Sum_probs=198.5
Q ss_pred CCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015951 122 PSDAQLIQIAIDDLNN--STLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ 198 (397)
Q Consensus 122 ~~d~~lmk~~i~~L~~--~~~s~e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aq 198 (397)
+.+++.++.++..|.. .+.+++....|+..+.||.. ..+.-...++.|++|.|+.+|.++++.++..|.++||+++.
T Consensus 229 ~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvt 308 (514)
T KOG0166|consen 229 SPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVT 308 (514)
T ss_pred CCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceee
Confidence 4456788887777644 23467888899999999994 56677889999999999999999999999999999999999
Q ss_pred CChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015951 199 NNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 277 (397)
Q Consensus 199 NNp~~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~ 277 (397)
.+....+.++..|++|.|..++.... ..++..|+|+||||+.+++...++++++|-++.|+++|++. +.++|+.|+|
T Consensus 309 G~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~--ef~~rKEAaw 386 (514)
T KOG0166|consen 309 GSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA--EFDIRKEAAW 386 (514)
T ss_pred ccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc--chHHHHHHHH
Confidence 99999999999999999999999544 55888899999999999999999999999999999999986 7899999999
Q ss_pred HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHH--------HHHHhcCChHHH
Q 015951 278 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA--------LVLKDFCGLDTA 349 (397)
Q Consensus 278 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r--------~~~~~~~gL~~~ 349 (397)
+|+|++.+ +.++...+++++|+++.++++|...|.++...++.++.++....+... ..+.+++|+ ..
T Consensus 387 aIsN~ts~----g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggl-dk 461 (514)
T KOG0166|consen 387 AISNLTSS----GTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGL-DK 461 (514)
T ss_pred HHHhhccc----CCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccCh-hH
Confidence 99999984 568888999999999999999999999999999999999998765433 234544444 55
Q ss_pred HHHHHHHhH
Q 015951 350 LERLRQQLQ 358 (397)
Q Consensus 350 L~~Lr~~~~ 358 (397)
++.|+++-+
T Consensus 462 iE~LQ~hen 470 (514)
T KOG0166|consen 462 IENLQSHEN 470 (514)
T ss_pred HHHhhcccc
Confidence 677877654
No 3
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=3.1e-18 Score=176.19 Aligned_cols=223 Identities=18% Similarity=0.216 Sum_probs=189.3
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 206 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~ 206 (397)
+..+++.|.... ++.-+..|...|.++.. ..+..+.++..|.+|.++.+|.++++.|++.|.|+||+++...|.+++.
T Consensus 111 v~~lV~~l~~~~-~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~ 189 (514)
T KOG0166|consen 111 VPRLVEFLSRDD-NPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDY 189 (514)
T ss_pred HHHHHHHHccCC-ChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHH
Confidence 445666675433 45678888899988774 5678889999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 207 VLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 207 vl~~g~lp~Ll~LL~s~~~-~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
+++.|++++|+.++..... ...+.++|+||+++|+..|....-.-...++.|..++++. |..+...|+|+|++|+.
T Consensus 190 vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAlsyLsd- 266 (514)
T KOG0166|consen 190 VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST--DEEVLTDACWALSYLTD- 266 (514)
T ss_pred HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhc-
Confidence 9999999999999998765 6789999999999999744333333367899999999986 77789999999999995
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhH
Q 015951 286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQ 358 (397)
Q Consensus 286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~ 358 (397)
+.++..+.+++.|+++.|+++|.+.+..++-.|++++++++..++...+.+-+.+.|..+...|.+.+.
T Consensus 267 ----g~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~ 335 (514)
T KOG0166|consen 267 ----GSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPK 335 (514)
T ss_pred ----CChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcc
Confidence 467888899999999999999999999999999999999999998888888866666666665554433
No 4
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.77 E-value=3.8e-17 Score=189.00 Aligned_cols=221 Identities=19% Similarity=0.167 Sum_probs=178.9
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHhccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 015951 129 QIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 207 (397)
Q Consensus 129 k~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~v 207 (397)
..+++.|.++ +.+.+..|+..|..+.... ++...+...||+|+|+++|.++++.+|..|+|+|++++.+++.+|..+
T Consensus 449 p~LV~LL~s~--s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV 526 (2102)
T PLN03200 449 QLLISLLGLS--SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACV 526 (2102)
T ss_pred HHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 3455556554 4577888899999988644 578889999999999999999999999999999999999887888888
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc-----------------------------------------------
Q 015951 208 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIR----------------------------------------------- 240 (397)
Q Consensus 208 l~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR----------------------------------------------- 240 (397)
.+.|++|+|+++|++++...+..|++||+++++
T Consensus 527 ~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~ 606 (2102)
T PLN03200 527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSA 606 (2102)
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhh
Confidence 788888888888888776677777777776643
Q ss_pred --------------------------------CChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc
Q 015951 241 --------------------------------NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 288 (397)
Q Consensus 241 --------------------------------~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~ 288 (397)
+++...+.++..||+++|+.+|++. +.++++.++|+|.+|+..
T Consensus 607 ~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~--~~~v~keAA~AL~nL~~~--- 681 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNN--TEAVATQSARALAALSRS--- 681 (2102)
T ss_pred ccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcC--ChHHHHHHHHHHHHHHhC---
Confidence 2333345566677888888888765 445788899999999863
Q ss_pred cCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhH
Q 015951 289 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQ 358 (397)
Q Consensus 289 ~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~ 358 (397)
.++..+..+++.|.++.|+++|+..|.++++.|+.+|.+++++++ .+..+...+++.++++.||+...
T Consensus 682 -~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e-~~~ei~~~~~I~~Lv~lLr~G~~ 749 (2102)
T PLN03200 682 -IKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPE-VAAEALAEDIILPLTRVLREGTL 749 (2102)
T ss_pred -CCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCch-HHHHHHhcCcHHHHHHHHHhCCh
Confidence 344566778999999999999999999999999999999999987 56667778999999999987654
No 5
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.76 E-value=5.2e-17 Score=187.89 Aligned_cols=216 Identities=12% Similarity=0.060 Sum_probs=183.4
Q ss_pred CHHHHHHHHHHHHhccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHh
Q 015951 141 SLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 219 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~-iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~L 219 (397)
+.+.+..+...|.+++.. .++...+...||+|+|+++|.++++.+|..|+|+|++++.+|+..+..+.+.|+||+|+++
T Consensus 417 ~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~L 496 (2102)
T PLN03200 417 TADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQL 496 (2102)
T ss_pred CHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 468899999999999954 6778899999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchh-----------c
Q 015951 220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL-----------E 288 (397)
Q Consensus 220 L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l-----------~ 288 (397)
|.+++..++..|+|||+|++.+.+..+..+.++|+++.|+.+|+++ +.+.|..|+++|.+|+.... .
T Consensus 497 L~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg--d~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLl 574 (2102)
T PLN03200 497 LETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG--GPKGQEIAAKTLTKLVRTADAATISQLTALLL 574 (2102)
T ss_pred HcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHhccchhHHHHHHHHhc
Confidence 9999999999999999999987666666666899999999999987 67899999999999974210 0
Q ss_pred cCCCC---------------------cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChH
Q 015951 289 NMHKV---------------------EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD 347 (397)
Q Consensus 289 ~~~~~---------------------~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~ 347 (397)
..++. ........|.++.|+++|++++..+++.|+.+|.++.......+..+...+++.
T Consensus 575 sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIp 654 (2102)
T PLN03200 575 GDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIIN 654 (2102)
T ss_pred CCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHH
Confidence 00000 011122468999999999999999999999999999998777666666689999
Q ss_pred HHHHHHHHHhH
Q 015951 348 TALERLRQQLQ 358 (397)
Q Consensus 348 ~~L~~Lr~~~~ 358 (397)
+++..|+..-.
T Consensus 655 PLV~LLss~~~ 665 (2102)
T PLN03200 655 PCIKLLTNNTE 665 (2102)
T ss_pred HHHHHHhcCCh
Confidence 99999887643
No 6
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.75 E-value=1.1e-17 Score=162.61 Aligned_cols=214 Identities=19% Similarity=0.175 Sum_probs=190.6
Q ss_pred CCCHHHHHHHHHHHhhC--CCCCHHHHHHHHHHHHhccCCCC-chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015951 121 TPSDAQLIQIAIDDLNN--STLSLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS 197 (397)
Q Consensus 121 ~~~d~~lmk~~i~~L~~--~~~s~e~k~~AL~~L~~Lve~iD-nA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~a 197 (397)
.|.|...|.+++.+|.. .+.++|....|+..+.|+.+-.. ....+...|-.+.|+++|.+++..|+..|.+.+|+++
T Consensus 234 P~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV 313 (526)
T COG5064 234 PPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV 313 (526)
T ss_pred CCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence 57788899998888754 23477889999999999997654 4556777888889999999999999999999999999
Q ss_pred cCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015951 198 QNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 277 (397)
Q Consensus 198 qNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~ 277 (397)
..+....+.++..|+++.+..+|++..+.+|+.|+|.|||+..++....+++++++-+++|+++|.+- +.++|..|||
T Consensus 314 TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a--e~k~kKEACW 391 (526)
T COG5064 314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA--EYKIKKEACW 391 (526)
T ss_pred ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH--HHHHHHHHHH
Confidence 99998888899999999999999998889999999999999999999999999999999999999975 8899999999
Q ss_pred HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHH
Q 015951 278 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEAL 338 (397)
Q Consensus 278 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~ 338 (397)
+++|..++. ...|+....++++|+++.|.++|...|..+.|.+|.|+.+++..++..|.
T Consensus 392 AisNatsgg--~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~ 450 (526)
T COG5064 392 AISNATSGG--LNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRL 450 (526)
T ss_pred HHHhhhccc--cCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHH
Confidence 999998754 23578888999999999999999998889999999999999988765544
No 7
>PF08609 Fes1: Nucleotide exchange factor Fes1; InterPro: IPR013918 Fes1 is a cytosolic homologue of Sls1, an ER protein which has nucleotide exchange factor activity. Fes1 in yeast has been shown to bind to the molecular chaperone Hsp70 and has adenyl-nucleotide exchange factor activity [].
Probab=99.73 E-value=5.1e-18 Score=138.56 Aligned_cols=87 Identities=37% Similarity=0.564 Sum_probs=70.7
Q ss_pred CChHHHHHHHHHhccccc--cccCCCCHHHHHHhHHHHHHHHHhc-CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015951 77 SSIDGMLQWAIAKLKETA--QDVQRLSPSELKKRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELL 153 (397)
Q Consensus 77 ~~l~glLkwsi~~~~~~~--~~~~~~s~e~l~~r~~~L~ea~~~~-~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~ 153 (397)
++|+|||||||+|+..+. +.....+|.. +|++|..++|+.+ ++|+|+++||+++++|.+++.++|+|+.||++|+
T Consensus 3 ~~l~~LLkWsI~ns~~~~~~~~~~~~~~~~--~~~~l~~~~L~~l~~~~sda~lMK~a~~vl~~~~~t~edk~~Ald~le 80 (92)
T PF08609_consen 3 PNLNGLLKWSIENSTTSASDAPPSAEQPDE--ERRQLDPEALDALFGGPSDAELMKEAMEVLEDPEVTLEDKLIALDNLE 80 (92)
T ss_pred HHHHHHHHHHHHcCCCCccccccCcCCchh--hhhhccHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 479999999999984222 2222222221 4677888887776 5999999999999999999999999999999999
Q ss_pred hccCCCCchhHH
Q 015951 154 ILVEPIDNANDL 165 (397)
Q Consensus 154 ~Lve~iDnA~~~ 165 (397)
+|||+|||||++
T Consensus 81 ~LVE~IDNANnl 92 (92)
T PF08609_consen 81 ELVENIDNANNL 92 (92)
T ss_pred HHHHcccccccC
Confidence 999999999985
No 8
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=99.69 E-value=1.1e-16 Score=155.86 Aligned_cols=212 Identities=16% Similarity=0.196 Sum_probs=178.1
Q ss_pred CHHHHHHHHHHHHhccCCCC--chhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH
Q 015951 141 SLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 217 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iD--nA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll 217 (397)
+.|....|.-.+..++.--+ --...+..|.+|.+++++ ++...-++..|+|+|.+++.........+++.|++|.++
T Consensus 84 Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfi 163 (526)
T COG5064 84 DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFI 163 (526)
T ss_pred HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHH
Confidence 46777788888887775443 346788899999999999 667788999999999999998776667788999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc---------
Q 015951 218 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE--------- 288 (397)
Q Consensus 218 ~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~--------- 288 (397)
+||.+++..|+..|+|||+|+..+++..++.+++.|.+++|..++.+...++++-+.+.|+|+|||..+-.
T Consensus 164 qlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isq 243 (526)
T COG5064 164 QLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQ 243 (526)
T ss_pred HHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHH
Confidence 99999999999999999999999999999999999999999999998777789999999999999985310
Q ss_pred ----------------------------cCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHH
Q 015951 289 ----------------------------NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVL 340 (397)
Q Consensus 289 ----------------------------~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~ 340 (397)
....+....+.+.|..+.|+++|.+++..++..|++.+++++..++..-+++
T Consensus 244 alpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqvi 323 (526)
T COG5064 244 ALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVI 323 (526)
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehh
Confidence 0001344567889999999999999999999999999999999887666666
Q ss_pred HhcCChHHHHHHH
Q 015951 341 KDFCGLDTALERL 353 (397)
Q Consensus 341 ~~~~gL~~~L~~L 353 (397)
- .||..+.+..|
T Consensus 324 I-~~G~L~a~~~l 335 (526)
T COG5064 324 I-NCGALKAFRSL 335 (526)
T ss_pred e-ecccHHHHHHH
Confidence 6 56654444433
No 9
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.68 E-value=1.4e-15 Score=149.24 Aligned_cols=204 Identities=19% Similarity=0.236 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC--cHHHHHHh
Q 015951 142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKM 219 (397)
Q Consensus 142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g--~lp~Ll~L 219 (397)
...+-.++..|..+.+..+|.+.++..||+|.|+.+|+++++++|.+++..|++++- ....+....+.+ .+|.|++|
T Consensus 181 irvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaV-d~~~Rk~Laqaep~lv~~Lv~L 259 (550)
T KOG4224|consen 181 IRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAV-DRRARKILAQAEPKLVPALVDL 259 (550)
T ss_pred hhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhh-hHHHHHHHHhcccchHHHHHHH
Confidence 345567999999999999999999999999999999999999999999999999996 466888888888 89999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015951 220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 299 (397)
Q Consensus 220 L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~ 299 (397)
.+++++.++-.|-.||.++..+ ...+..++++||+|.++.+|+++ ..++....+++|.|++- +|-....+.
T Consensus 260 md~~s~kvkcqA~lALrnlasd-t~Yq~eiv~ag~lP~lv~Llqs~--~~plilasVaCIrnisi------hplNe~lI~ 330 (550)
T KOG4224|consen 260 MDDGSDKVKCQAGLALRNLASD-TEYQREIVEAGSLPLLVELLQSP--MGPLILASVACIRNISI------HPLNEVLIA 330 (550)
T ss_pred HhCCChHHHHHHHHHHhhhccc-chhhhHHHhcCCchHHHHHHhCc--chhHHHHHHHHHhhccc------ccCccccee
Confidence 9999999999999999999765 45578889999999999999987 45578889999999985 555556688
Q ss_pred hCCcHHHHHHhccCCCh-HHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951 300 DRFFLKSVVDLTASADL-DLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 300 ~~g~v~~Lv~lL~~~d~-dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 355 (397)
+.|+++.||.+|+.+|. ++|-+|..+|++|+..++..+.+|++.|.++.+.+.++.
T Consensus 331 dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD 387 (550)
T KOG4224|consen 331 DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLD 387 (550)
T ss_pred cccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhc
Confidence 99999999999998754 599999999999999888889999988888777776643
No 10
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.62 E-value=1.9e-15 Score=148.33 Aligned_cols=208 Identities=14% Similarity=0.150 Sum_probs=183.1
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc
Q 015951 142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 221 (397)
Q Consensus 142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~ 221 (397)
..-...|-..+-++.-+..|.-.+++++|+.+|+.....+..++|+.|..||.+++.- ...+..+...|++.+|.+|.+
T Consensus 99 ~~Iq~aa~~alGnlAVn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLak 177 (550)
T KOG4224|consen 99 KCIQCAAGEALGNLAVNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAK 177 (550)
T ss_pred hhhhhhhhhhhccceeccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcc
Confidence 3445567788888888899999999999999999999999999999999999999976 668889999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015951 222 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR 301 (397)
Q Consensus 222 s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~ 301 (397)
+.+..++..|+.||++|. |...+++.++.+||++.|+.+++++ +..+|..++.++++++. +...+..+.+.
T Consensus 178 skdirvqrnatgaLlnmT-hs~EnRr~LV~aG~lpvLVsll~s~--d~dvqyycttaisnIaV------d~~~Rk~Laqa 248 (550)
T KOG4224|consen 178 SKDIRVQRNATGALLNMT-HSRENRRVLVHAGGLPVLVSLLKSG--DLDVQYYCTTAISNIAV------DRRARKILAQA 248 (550)
T ss_pred cchhhHHHHHHHHHHHhh-hhhhhhhhhhccCCchhhhhhhccC--ChhHHHHHHHHhhhhhh------hHHHHHHHHhc
Confidence 988999999999999995 5678899999999999999999987 55689999999999985 45667778777
Q ss_pred C--cHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHh
Q 015951 302 F--FLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEV 360 (397)
Q Consensus 302 g--~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l 360 (397)
+ +++.|++++..+++.++-+|..||++|+++.+..+...+ .|+|+..++.||+-+-.+
T Consensus 249 ep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~~~pl 308 (550)
T KOG4224|consen 249 EPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSPMGPL 308 (550)
T ss_pred ccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCcchhH
Confidence 7 999999999999999999999999999999886666555 999999999997766443
No 11
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.55 E-value=1.5e-13 Score=114.30 Aligned_cols=118 Identities=25% Similarity=0.381 Sum_probs=111.2
Q ss_pred HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q 015951 164 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 243 (397)
Q Consensus 164 ~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~ 243 (397)
.+++.|+++.++++|.++++.+|..|+++|++++.++|.....+++.|++|.|++++.++++.++..|+++|++++.+.+
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~ 81 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence 36789999999999999999999999999999999999999999999999999999999889999999999999999988
Q ss_pred hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015951 244 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 283 (397)
Q Consensus 244 ~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~ 283 (397)
.....+.+.|+++.|.+++.++ +.+++..+++++.+|+
T Consensus 82 ~~~~~~~~~g~l~~l~~~l~~~--~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 82 DNKLIVLEAGGVPKLVNLLDSS--NEDIQKNATGALSNLA 119 (120)
T ss_pred HHHHHHHHCCChHHHHHHHhcC--CHHHHHHHHHHHHHhh
Confidence 8888889999999999999986 6679999999999987
No 12
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=99.44 E-value=1.3e-12 Score=138.90 Aligned_cols=214 Identities=16% Similarity=0.187 Sum_probs=175.4
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh--cHH
Q 015951 170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA--GQE 247 (397)
Q Consensus 170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~--~~~ 247 (397)
=+|..+.+|.+.++.++..|+..|..+|..+.+++..+.+.|+||+|+.+|.+...+|+..|++||-|++.+... +.-
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 367788999999999999999999999999999999999999999999999999999999999999999998766 888
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHh-cc-------------C
Q 015951 248 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL-TA-------------S 313 (397)
Q Consensus 248 ~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~l-L~-------------~ 313 (397)
++.++||++.++++|+... |..++..++.+++||.+ .+..+..++... +..|.+- +. -
T Consensus 314 ai~~~~Gv~~l~~~Lr~t~-D~ev~e~iTg~LWNLSS------~D~lK~~ii~~a-l~tLt~~vI~P~Sgw~~~~~~~~~ 385 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHTQ-DDEVRELITGILWNLSS------NDALKMLIITSA-LSTLTDNVIIPHSGWEEEPAPRKA 385 (717)
T ss_pred hhhhcCChHHHHHHHHhhc-chHHHHHHHHHHhcccc------hhHHHHHHHHHH-HHHHHHhhcccccccCCCCccccc
Confidence 8999999999999999642 45689999999999985 344555444433 3333222 11 1
Q ss_pred CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh-HHHHHHHHHHhHHhhhhhhhhhhHHhHHHHH-------HHHHHHHH
Q 015951 314 ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQEVMLEEDQRDYAMDVEALR-------REVELIFF 385 (397)
Q Consensus 314 ~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~~~~l~~~e~~~~~~~~l~~~~-------~e~~~~~~ 385 (397)
.+.++...+..||+++++.+.+.|+.++++.|| +.++..++.-+....-|.+.+|+|. +.+| .||-.-++
T Consensus 386 ~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcv--CilRNLSYrl~~Evp~~~~ 463 (717)
T KOG1048|consen 386 EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCV--CILRNLSYRLEAEVPPKYR 463 (717)
T ss_pred ccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHH--HHHhhcCchhhhhcCHhhh
Confidence 146788999999999999988999999988886 8888888877777777999999994 4477 56666666
Q ss_pred HHhhhccc
Q 015951 386 RKLDDSGS 393 (397)
Q Consensus 386 ~~~~~~~~ 393 (397)
+-+..++.
T Consensus 464 ~~~~~~~~ 471 (717)
T KOG1048|consen 464 QVLANIAR 471 (717)
T ss_pred hHhhcccc
Confidence 66665553
No 13
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=99.37 E-value=1.2e-11 Score=102.78 Aligned_cols=118 Identities=21% Similarity=0.229 Sum_probs=107.7
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
.+.+.|+++.|++++.+++..++..++++|++++.+++.....|++.|+++.|..+|.++ +.+++..+++++++|+..
T Consensus 2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~--~~~v~~~a~~~L~~l~~~ 79 (120)
T cd00020 2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE--DEEVVKAALWALRNLAAG 79 (120)
T ss_pred hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCC--CHHHHHHHHHHHHHHccC
Confidence 467899999999999998889999999999999999999999999999999999999986 678999999999999962
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951 286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 330 (397)
Q Consensus 286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 330 (397)
.+.....+.+.|+++.++.++..++..+++.++.+|.+|+
T Consensus 80 -----~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 80 -----PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred -----cHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 4456677788999999999999999999999999999986
No 14
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=99.27 E-value=2.1e-10 Score=123.88 Aligned_cols=194 Identities=18% Similarity=0.169 Sum_probs=165.9
Q ss_pred HHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHH
Q 015951 147 RALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE 226 (397)
Q Consensus 147 ~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~ 226 (397)
.++.-|.++.++..+-..+.+-|++++|+.+|.+.+.++...+..+|..++-. ++++..+.+.|++|+|++++.+++..
T Consensus 268 v~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~ 346 (708)
T PF05804_consen 268 VAFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENED 346 (708)
T ss_pred HHHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHH
Confidence 45777899999999999999999999999999999999999999999999974 66999999999999999999999988
Q ss_pred HHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHH
Q 015951 227 EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS 306 (397)
Q Consensus 227 v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~ 306 (397)
+...++.+|.|+.- ++..+..+++.|.++.|+.+|.++ + .+.-+..+|++|+. ++..+..|...+.++.
T Consensus 347 l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~--~~~val~iLy~LS~------dd~~r~~f~~TdcIp~ 415 (708)
T PF05804_consen 347 LVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKDP--N--FREVALKILYNLSM------DDEARSMFAYTDCIPQ 415 (708)
T ss_pred HHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--c--hHHHHHHHHHHhcc------CHhhHHHHhhcchHHH
Confidence 99999999999965 567799999999999999999975 2 46679999999985 5678888988899999
Q ss_pred HHHhcc-CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHH
Q 015951 307 VVDLTA-SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 353 (397)
Q Consensus 307 Lv~lL~-~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~L 353 (397)
+++++- .++..+...++..+.+|+.+.. +.+.+-+.+||..++.+.
T Consensus 416 L~~~Ll~~~~~~v~~eliaL~iNLa~~~r-naqlm~~g~gL~~L~~ra 462 (708)
T PF05804_consen 416 LMQMLLENSEEEVQLELIALLINLALNKR-NAQLMCEGNGLQSLMKRA 462 (708)
T ss_pred HHHHHHhCCCccccHHHHHHHHHHhcCHH-HHHHHHhcCcHHHHHHHH
Confidence 999754 4566666667778889998876 456676678887766544
No 15
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=99.22 E-value=1.7e-09 Score=113.83 Aligned_cols=212 Identities=17% Similarity=0.157 Sum_probs=172.4
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Q 015951 131 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 210 (397)
Q Consensus 131 ~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~ 210 (397)
++..|+.. +.|....+.+.|..++...+-... .-+..+.|...|.|+++.||..|++.|+.+++++....+.+.+.
T Consensus 43 lf~~L~~~--~~e~v~~~~~iL~~~l~~~~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~ 118 (503)
T PF10508_consen 43 LFDCLNTS--NREQVELICDILKRLLSALSPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDN 118 (503)
T ss_pred HHHHHhhc--ChHHHHHHHHHHHHHHhccCHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCc
Confidence 44555544 456666677888888877654443 33456777789999999999999999999999998888889999
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015951 211 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 290 (397)
Q Consensus 211 g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~ 290 (397)
+.++.++.++.+++.++...|+.+|+.++++ ++..+.++..++...|..++..++ ..+|.++..++.+++. .
T Consensus 119 ~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~l~~~~~--~~vR~Rv~el~v~i~~-----~ 190 (503)
T PF10508_consen 119 ELLPLIIQCLRDPDLSVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKSLMSQSS--DIVRCRVYELLVEIAS-----H 190 (503)
T ss_pred cHHHHHHHHHcCCcHHHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHHHHhccC--HHHHHHHHHHHHHHHh-----c
Confidence 9999999999999999999999999999975 556677888899999999998753 2478889999999986 3
Q ss_pred CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951 291 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 291 ~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 355 (397)
+++..+.+.+.|+++.++..|.++|.-++..++..|..|+... ...+.+.+.|.++.+...+..
T Consensus 191 S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~-~g~~yL~~~gi~~~L~~~l~~ 254 (503)
T PF10508_consen 191 SPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETP-HGLQYLEQQGIFDKLSNLLQD 254 (503)
T ss_pred CHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcCh-hHHHHHHhCCHHHHHHHHHhc
Confidence 6677888889999999999999999999999999999999954 456666655555555555433
No 16
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=99.21 E-value=4.4e-10 Score=108.28 Aligned_cols=175 Identities=17% Similarity=0.170 Sum_probs=137.2
Q ss_pred HhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015951 166 SKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 244 (397)
Q Consensus 166 ~~lGGl~~Li~lL~-s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~ 244 (397)
...+.++.|+.+|. +.+|.++..|..++|+.+. .|..|+.+.+.|+++.+..+++++++.++.+|++||.++.-+ .+
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aa-f~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~e 86 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAA-FPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DE 86 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhcc-ChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hh
Confidence 44567889999996 5689999999999999875 799999999999999999999999999999999999999655 44
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHH
Q 015951 245 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALA 324 (397)
Q Consensus 245 ~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~ 324 (397)
++..+ +.-+-.++..+...+ .+..+|..+..+|.+|+. .++....+. +.++.++.+|.+++..++.+++.
T Consensus 87 n~~~I-k~~i~~Vc~~~~s~~-lns~~Q~agLrlL~nLtv------~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk 156 (254)
T PF04826_consen 87 NQEQI-KMYIPQVCEETVSSP-LNSEVQLAGLRLLTNLTV------TNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLK 156 (254)
T ss_pred hHHHH-HHHHHHHHHHHhcCC-CCCHHHHHHHHHHHccCC------CcchhhhHH--hhHHHHHHHHHcCChHHHHHHHH
Confidence 45544 333444444444443 355689999999999975 233344443 47899999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHhcCChHHHHHHH
Q 015951 325 AIKNLLQLRTTEALVLKDFCGLDTALERL 353 (397)
Q Consensus 325 aL~~L~~~~~~~r~~~~~~~gL~~~L~~L 353 (397)
+|.+|++.+...+..+. +.++...+..+
T Consensus 157 ~L~nLS~np~~~~~Ll~-~q~~~~~~~Lf 184 (254)
T PF04826_consen 157 VLVNLSENPDMTRELLS-AQVLSSFLSLF 184 (254)
T ss_pred HHHHhccCHHHHHHHHh-ccchhHHHHHH
Confidence 99999999876777665 55555544433
No 17
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.13 E-value=5.7e-09 Score=103.21 Aligned_cols=181 Identities=18% Similarity=0.150 Sum_probs=143.6
Q ss_pred HHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHH
Q 015951 149 LQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA 228 (397)
Q Consensus 149 L~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~ 228 (397)
-+..-+.+++....-++.++ ++..+.-..+.+.+=+..|..-|-..+.+ -..-..+...||+++++..+.+++.++|
T Consensus 65 ~e~~k~~~~~~~~~~~~~~~--~~~~~~~~~s~~le~ke~ald~Le~lve~-iDnAndl~~~ggl~~ll~~l~~~~~~lR 141 (342)
T KOG2160|consen 65 TEDQKDFVEDMKVISDVMSM--IPIVILNSSSVDLEDKEDALDNLEELVED-IDNANDLISLGGLVPLLGYLENSDAELR 141 (342)
T ss_pred hhhhhhhcccchhHHHHHHh--hhhhccCcccCCHHHHHHHHHHHHHHHHh-hhhHHhHhhccCHHHHHHHhcCCcHHHH
Confidence 34445666777766666666 22222223456788889999999999964 5577788999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHH
Q 015951 229 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 308 (397)
Q Consensus 229 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 308 (397)
++|++.|+.+++|||..|..+++.||.+.|..++.++ ++...|.||.+++++|..+ ++.-...|...+....|.
T Consensus 142 ~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~~-~~~~~r~kaL~AissLIRn-----~~~g~~~fl~~~G~~~L~ 215 (342)
T KOG2160|consen 142 ELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSSD-DPNTVRTKALFAISSLIRN-----NKPGQDEFLKLNGYQVLR 215 (342)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHccC-CCchHHHHHHHHHHHHHhc-----CcHHHHHHHhcCCHHHHH
Confidence 9999999999999999999999999999999999965 4567899999999999984 444444455555588999
Q ss_pred HhccC--CChHHHHHHHHHHHHHhcCChHHHH
Q 015951 309 DLTAS--ADLDLQEKALAAIKNLLQLRTTEAL 338 (397)
Q Consensus 309 ~lL~~--~d~dv~E~aL~aL~~L~~~~~~~r~ 338 (397)
..+.+ .+..++.+++..+..|++.....+.
T Consensus 216 ~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d 247 (342)
T KOG2160|consen 216 DVLQSNNTSVKLKRKALFLLSLLLQEDKSDED 247 (342)
T ss_pred HHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence 99988 5788999999999999876443333
No 18
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=99.11 E-value=5.8e-09 Score=103.22 Aligned_cols=236 Identities=22% Similarity=0.266 Sum_probs=162.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCC-CCchhHHHhcC------CHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015951 125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLG------GLSVLVGQLNHPDTDIRKISAWILGKAS 197 (397)
Q Consensus 125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnA~~~~~lG------Gl~~Li~lL~s~~~~ir~~Aa~vLg~~a 197 (397)
+..+-.++..+ ...++...-.|--+.+++.+ .....-|.... -+.+++.++.+++.-++..|+.+++.+.
T Consensus 57 ~~~~l~lL~~~---~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll 133 (312)
T PF03224_consen 57 ASLFLNLLNKL---SSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLL 133 (312)
T ss_dssp -----HHHHHH------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc---cCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 33444455544 22446666677777777744 45666677643 4899999999999999999999999998
Q ss_pred cCChHHHHHHHHcCcHHHHHHhhcCC----CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh-----cCCCcc
Q 015951 198 QNNPLVQKQVLELGALSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL-----GNSSFE 268 (397)
Q Consensus 198 qNNp~~Q~~vl~~g~lp~Ll~LL~s~----~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL-----~s~~~d 268 (397)
...+....... .+.++.+++.+.+. +.+++.-++.++++++|. +..+..|.+.||++.|..++ .+++.+
T Consensus 134 ~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~ 211 (312)
T PF03224_consen 134 SQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSG 211 (312)
T ss_dssp TSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------H
T ss_pred HcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCc
Confidence 77665444433 45778888888763 235678899999999974 77899999999999999999 344467
Q ss_pred HHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCChH-HHHHHHhcCCh
Q 015951 269 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRTT-EALVLKDFCGL 346 (397)
Q Consensus 269 ~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~~-~r~~~~~~~gL 346 (397)
..++-.++++++-|+. ++...+.+.+.++++.++++++.. ...+..-++.++.||+..+.. +...+- .+|+
T Consensus 212 ~Ql~Y~~ll~lWlLSF------~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv-~~~~ 284 (312)
T PF03224_consen 212 IQLQYQALLCLWLLSF------EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMV-LCGL 284 (312)
T ss_dssp HHHHHHHHHHHHHHTT------SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHH-HH-H
T ss_pred hhHHHHHHHHHHHHhc------CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHH-HccH
Confidence 8899999999999986 566777888899999999998764 678999999999999988763 444444 5778
Q ss_pred HHHHHHHHHHhHHhhhhhhhhhhHHhHHHHHH
Q 015951 347 DTALERLRQQLQEVMLEEDQRDYAMDVEALRR 378 (397)
Q Consensus 347 ~~~L~~Lr~~~~~l~~~e~~~~~~~~l~~~~~ 378 (397)
.+.+..|..+ -..|+ |-.+|++.+.+
T Consensus 285 l~~l~~L~~r---k~~De---dl~edl~~L~e 310 (312)
T PF03224_consen 285 LKTLQNLSER---KWSDE---DLTEDLEFLKE 310 (312)
T ss_dssp HHHHHHHHSS-----SSH---HHHHHHHHHHH
T ss_pred HHHHHHHhcC---CCCCH---HHHHHHHHHHh
Confidence 7887777554 22444 34455655554
No 19
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=98.99 E-value=5.4e-08 Score=93.87 Aligned_cols=193 Identities=19% Similarity=0.135 Sum_probs=155.5
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015951 125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 204 (397)
Q Consensus 125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q 204 (397)
++-+++++..|.... ++.-+..|+-.+.......-|-.-+.+.||++.+..+|+++++.+|..|.+++.+++.+ .+.|
T Consensus 11 ~~~l~~Ll~lL~~t~-dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~en~ 88 (254)
T PF04826_consen 11 AQELQKLLCLLESTE-DPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-DENQ 88 (254)
T ss_pred HHHHHHHHHHHhcCC-ChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-hhhH
Confidence 455677777777543 56677788888888766666777788899999999999999999999999999999865 6677
Q ss_pred HHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015951 205 KQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 282 (397)
Q Consensus 205 ~~vl~~g~lp~Ll~LL~s~--~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L 282 (397)
..+-. .++.+++...+. +.+++..++.+|.+|...+. .+..+ .+.++.+.++|.++ +.++|..+..+|.+|
T Consensus 89 ~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~-~~~~l--~~~i~~ll~LL~~G--~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 89 EQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTND-YHHML--ANYIPDLLSLLSSG--SEKTKVQVLKVLVNL 161 (254)
T ss_pred HHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcc-hhhhH--HhhHHHHHHHHHcC--ChHHHHHHHHHHHHh
Confidence 77644 588888876654 35789999999999976543 24444 45899999999987 567899999999999
Q ss_pred hhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcC
Q 015951 283 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 283 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~ 332 (397)
+. ++.....+.....+..++.++... +.++...++..+.++...
T Consensus 162 S~------np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 162 SE------NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred cc------CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 85 677777888888999999999876 678889999888888754
No 20
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.98 E-value=1.1e-07 Score=93.53 Aligned_cols=217 Identities=13% Similarity=0.117 Sum_probs=170.7
Q ss_pred HHhhCCCCCHHHHHHHHHHHHhccCC----------CCchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCCh
Q 015951 133 DDLNNSTLSLEDSQRALQELLILVEP----------IDNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNP 201 (397)
Q Consensus 133 ~~L~~~~~s~e~k~~AL~~L~~Lve~----------iDnA~~~~~lGGl~~Li~lL~s-~~~~ir~~Aa~vLg~~aqNNp 201 (397)
..|+..+.+ +.--.+.+.+..++-+ ...|+.|.+.||+..|++.|.. -+|++-..++..|++++-+|+
T Consensus 196 ~~l~~~gk~-~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E 274 (461)
T KOG4199|consen 196 QVLNREGKT-RTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDE 274 (461)
T ss_pred HHHcccCcc-HHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHH
Confidence 355555544 2233445666655543 3468999999999999999955 579999999999999999888
Q ss_pred HHHHHHHHcCcHHHHHHhhcCCCH-HHH---HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015951 202 LVQKQVLELGALSKLMKMVKSSFV-EEA---VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 277 (397)
Q Consensus 202 ~~Q~~vl~~g~lp~Ll~LL~s~~~-~v~---~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~ 277 (397)
.||. +.+.||+..|+.++++.+. ..| +.++.-|+.+. ++......+++.||.+.++.++...++++.+-..++.
T Consensus 275 ~C~~-I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a 352 (461)
T KOG4199|consen 275 ICKS-IAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMA 352 (461)
T ss_pred HHHH-HHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHH
Confidence 6665 6789999999999998653 444 45677777765 5667889999999999999998765567788999999
Q ss_pred HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951 278 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 278 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 355 (397)
+++-|+-- .|+.-..+++.|.-...++.++.. ...+|.++.++++|++..+.+.+..+- ..|++.++..=+.
T Consensus 353 ~i~~l~LR-----~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l-~~GiE~Li~~A~~ 426 (461)
T KOG4199|consen 353 IISILCLR-----SPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILL-ANGIEKLIRTAKA 426 (461)
T ss_pred HHHHHHhc-----CcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHH-hccHHHHHHHHHh
Confidence 99999862 567777888999999999988753 668999999999999999887777777 7888888876665
Q ss_pred HhH
Q 015951 356 QLQ 358 (397)
Q Consensus 356 ~~~ 358 (397)
.++
T Consensus 427 ~h~ 429 (461)
T KOG4199|consen 427 NHE 429 (461)
T ss_pred cCc
Confidence 544
No 21
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.96 E-value=4.2e-08 Score=96.35 Aligned_cols=173 Identities=12% Similarity=0.124 Sum_probs=139.4
Q ss_pred chhHHHhcCCHHHHHHhcCC-CCHHHH---HHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc--CCCHHHHHHHHHH
Q 015951 161 NANDLSKLGGLSVLVGQLNH-PDTDIR---KISAWILGKASQNNPLVQKQVLELGALSKLMKMVK--SSFVEEAVKALYT 234 (397)
Q Consensus 161 nA~~~~~lGGl~~Li~lL~s-~~~~ir---~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~--s~~~~v~~kAl~A 234 (397)
....+...||+..|++++.+ .+.+.| ..++..|..++ .+..++..+++.|+++.++.++. ++++.+...++.+
T Consensus 275 ~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~ 353 (461)
T KOG4199|consen 275 ICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAI 353 (461)
T ss_pred HHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHH
Confidence 34566678999999999965 556666 45666667777 46779999999999999999875 4567788888889
Q ss_pred HHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC
Q 015951 235 VSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 314 (397)
Q Consensus 235 LS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~ 314 (397)
||-++--.|.....|++.||-...++.|+.....-.+|++|+++|.|++.. ..+.+..+...| ++.|+..-+..
T Consensus 354 i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~r-----s~~~~~~~l~~G-iE~Li~~A~~~ 427 (461)
T KOG4199|consen 354 ISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVR-----SAENRTILLANG-IEKLIRTAKAN 427 (461)
T ss_pred HHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHh-----hhhccchHHhcc-HHHHHHHHHhc
Confidence 998877788989999999999999999986534556999999999999973 345566667666 67777777888
Q ss_pred ChHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951 315 DLDLQEKALAAIKNLLQLRTTEALVLK 341 (397)
Q Consensus 315 d~dv~E~aL~aL~~L~~~~~~~r~~~~ 341 (397)
++++...+-.||+-|-++.. .|..|.
T Consensus 428 h~tce~~akaALRDLGc~v~-lre~wt 453 (461)
T KOG4199|consen 428 HETCEAAAKAALRDLGCDVY-LREEWT 453 (461)
T ss_pred CccHHHHHHHHHHhcCcchh-hHHHhc
Confidence 88999999999999998864 677775
No 22
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=98.92 E-value=9.4e-08 Score=100.72 Aligned_cols=195 Identities=17% Similarity=0.151 Sum_probs=160.7
Q ss_pred HHHHHHHHHhcCCCC-HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCch-hHHHhcCCHHHHHHhcCCCCHHHH
Q 015951 109 QMEIKELMEKLKTPS-DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA-NDLSKLGGLSVLVGQLNHPDTDIR 186 (397)
Q Consensus 109 ~~~L~ea~~~~~~~~-d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA-~~~~~lGGl~~Li~lL~s~~~~ir 186 (397)
.+-|+..++.+.+.+ ....+.-+..-|.++ ++..|.-++..+..+++..+.+ .-+...+.++.++.+|.+++.++.
T Consensus 59 ~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~--~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va 136 (503)
T PF10508_consen 59 CDILKRLLSALSPDSLLPQYQPFLQRGLTHP--SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVA 136 (503)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHH
Confidence 455666666543332 345555566666665 4677888999999988877664 445667888999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC
Q 015951 187 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 266 (397)
Q Consensus 187 ~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~ 266 (397)
..|+.+|..++.+.+.. +.++..+.++.|.+++...++.+|.+++..+..+..+++.......+.|-++.++..+.++
T Consensus 137 ~~A~~~L~~l~~~~~~~-~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~d- 214 (503)
T PF10508_consen 137 KAAIKALKKLASHPEGL-EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSD- 214 (503)
T ss_pred HHHHHHHHHHhCCchhH-HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCc-
Confidence 99999999999876544 5677888899999999987888899999999999999999999999999999999999985
Q ss_pred ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC
Q 015951 267 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA 314 (397)
Q Consensus 267 ~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~ 314 (397)
|+-+|..++-+++.|+. .+....++.+.|+++.+++++...
T Consensus 215 -DiLvqlnalell~~La~------~~~g~~yL~~~gi~~~L~~~l~~~ 255 (503)
T PF10508_consen 215 -DILVQLNALELLSELAE------TPHGLQYLEQQGIFDKLSNLLQDS 255 (503)
T ss_pred -cHHHHHHHHHHHHHHHc------ChhHHHHHHhCCHHHHHHHHHhcc
Confidence 88899999999999995 456688899999999999998764
No 23
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=98.89 E-value=3.3e-08 Score=103.76 Aligned_cols=182 Identities=14% Similarity=0.102 Sum_probs=142.6
Q ss_pred HHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHH
Q 015951 150 QELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAV 229 (397)
Q Consensus 150 ~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~ 229 (397)
..+.+..+ ++++..+-..--...+.......+...+..|+-|+-+++..-...+.-+-...+..+|++++..++..+..
T Consensus 359 ~~~~~~~~-i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~ 437 (678)
T KOG1293|consen 359 NHLEYGLE-ISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMG 437 (678)
T ss_pred hhhhhhcc-hhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHH
Confidence 33444444 77777776554444444444567889999999999888876554555444557899999999887788999
Q ss_pred HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015951 230 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 309 (397)
Q Consensus 230 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 309 (397)
.+++||.|++-.+.+-+..|+..||+..|...+.++ +..+|.++.|+|++++.+ .++..+..+...-....++.
T Consensus 438 ~~lgai~NlVmefs~~kskfl~~ngId~l~s~~~~~--~~n~r~~~~~~Lr~l~f~----~de~~k~~~~~ki~a~~i~~ 511 (678)
T KOG1293|consen 438 ITLGAICNLVMEFSNLKSKFLRNNGIDILESMLTDP--DFNSRANSLWVLRHLMFN----CDEEEKFQLLAKIPANLILD 511 (678)
T ss_pred HHHHHHHHHHhhcccHHHHHHHcCcHHHHHHHhcCC--CchHHHHHHHHHHHHHhc----chHHHHHHHHHHhhHHHHHH
Confidence 999999999999999999999999999999999987 566899999999999973 44444445555555667788
Q ss_pred hccCCChHHHHHHHHHHHHHhcCChHHHH
Q 015951 310 LTASADLDLQEKALAAIKNLLQLRTTEAL 338 (397)
Q Consensus 310 lL~~~d~dv~E~aL~aL~~L~~~~~~~r~ 338 (397)
+.+.+|..|||+++..|+||+++..+.-.
T Consensus 512 l~nd~d~~Vqeq~fqllRNl~c~~~~svd 540 (678)
T KOG1293|consen 512 LINDPDWAVQEQCFQLLRNLTCNSRKSVD 540 (678)
T ss_pred HHhCCCHHHHHHHHHHHHHhhcCcHHHHH
Confidence 88999999999999999999998554444
No 24
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=98.82 E-value=2.2e-06 Score=88.23 Aligned_cols=245 Identities=16% Similarity=0.123 Sum_probs=170.3
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC-CchhHHHhc-----CCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015951 125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKL-----GGLSVLVGQLNHPDTDIRKISAWILGKASQ 198 (397)
Q Consensus 125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnA~~~~~l-----GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aq 198 (397)
....+-.+..+...+ .++...-.|--+.+++... .-+.-|+.. .-+.+++.+|++++.-|...|+.+++.+++
T Consensus 52 ~~y~~~~l~ll~~~~-~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~ 130 (429)
T cd00256 52 GQYVKTFVNLLSQID-KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLAC 130 (429)
T ss_pred HHHHHHHHHHHhccC-cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHh
Confidence 566666777776543 3455556666666666543 345667765 468899999999999999999999999987
Q ss_pred CChHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015951 199 NNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 277 (397)
Q Consensus 199 NNp~~Q~~vl~~g~lp~Ll~LL~s~-~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~ 277 (397)
..+.........-.++.|...+++. +...+.-++.+++.++|. +..+..|.+++|++.|..+|+....+..++-.+++
T Consensus 131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll 209 (429)
T cd00256 131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIF 209 (429)
T ss_pred cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHHHHHHHccCHHHHHHHHhhccccHHHHHHHHH
Confidence 5443222111111334555666653 345677788999999986 45678899999999999999865446679999999
Q ss_pred HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCCh------HHHHHHHhcCChHHHH
Q 015951 278 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRT------TEALVLKDFCGLDTAL 350 (397)
Q Consensus 278 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~------~~r~~~~~~~gL~~~L 350 (397)
+++-|+.+ +...+.+...++++.++++++.. -..+..-++.++.||+..+. .+...+- .+|+.+.+
T Consensus 210 ~lWlLSF~------~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv-~~~l~~~l 282 (429)
T cd00256 210 CIWLLTFN------PHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMV-QCKVLKTL 282 (429)
T ss_pred HHHHHhcc------HHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHH-HcChHHHH
Confidence 99998863 33555667789999999999764 56888888999999998531 1223333 56887777
Q ss_pred HHHHHHhHHhhhhhhhhhhHHhHHHHHHHHHHHH
Q 015951 351 ERLRQQLQEVMLEEDQRDYAMDVEALRREVELIF 384 (397)
Q Consensus 351 ~~Lr~~~~~l~~~e~~~~~~~~l~~~~~e~~~~~ 384 (397)
..|..+ -..|+ |-.+|++.+.+..+..+
T Consensus 283 ~~L~~r---k~~De---dL~edl~~L~e~L~~~~ 310 (429)
T cd00256 283 QSLEQR---KYDDE---DLTDDLKFLTEELKNSV 310 (429)
T ss_pred HHHhcC---CCCcH---HHHHHHHHHHHHHHHHH
Confidence 766544 22344 34556777777666664
No 25
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=98.77 E-value=9.4e-07 Score=95.94 Aligned_cols=221 Identities=19% Similarity=0.171 Sum_probs=170.0
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQ 206 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~l-L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~ 206 (397)
+..+++.+.+.. +.+....++.-+-++..+..||.-++.-||++.|+.. ++..++- -..+|.+++++.+..|..
T Consensus 413 Ip~L~~~Ll~~~-~~~v~~eliaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~h~~~~k~~ 487 (708)
T PF05804_consen 413 IPQLMQMLLENS-EEEVQLELIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQHDGPLKEL 487 (708)
T ss_pred HHHHHHHHHhCC-CccccHHHHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHhcCchHHHH
Confidence 344455444332 2233445667777888899999999999999999975 4555543 447999999999888888
Q ss_pred HHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 207 VLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 207 vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
|.+ .+..|+.++.+++ ++....++..|+|+.-.+......+.+++-++.|...|..+..+..+...++-+++.++.
T Consensus 488 f~~--~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~- 564 (708)
T PF05804_consen 488 FVD--FIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLAS- 564 (708)
T ss_pred HHH--HHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHC-
Confidence 875 7999999998754 578899999999997655444444556899999999998664445588899999999985
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh-HHHHHHHHHHhHHhhh
Q 015951 286 QLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQEVML 362 (397)
Q Consensus 286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~~~~l~~ 362 (397)
++.....+.+.|+++.++++|+. +|.++.-+.+.++.+++.+.+ .|+.+-...++ .-++..++.++.+...
T Consensus 565 -----d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~-tr~~ll~~~~~~~ylidL~~d~N~~ir~ 638 (708)
T PF05804_consen 565 -----DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEE-TREVLLKETEIPAYLIDLMHDKNAEIRK 638 (708)
T ss_pred -----CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChH-HHHHHHhccchHHHHHHHhcCCCHHHHH
Confidence 67788888999999999999976 478999999999999999976 67766444444 5677877777766543
No 26
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.71 E-value=2.8e-06 Score=91.56 Aligned_cols=241 Identities=16% Similarity=0.150 Sum_probs=176.2
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhH-----HHhcCCHHHHHHhcCC-CCHHHHHHHHHHHH
Q 015951 121 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAND-----LSKLGGLSVLVGQLNH-PDTDIRKISAWILG 194 (397)
Q Consensus 121 ~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~-----~~~lGGl~~Li~lL~s-~~~~ir~~Aa~vLg 194 (397)
+.+.--.||+++.-|.+.+ ++-..+.|+-+|.+ .+-+.|. |----.+|.|+.+|++ .+.+|.-.||++|.
T Consensus 162 ~~sasSk~kkLL~gL~~~~-Des~Qleal~Elce---~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRalt 237 (1051)
T KOG0168|consen 162 GSSASSKAKKLLQGLQAES-DESQQLEALTELCE---MLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALT 237 (1051)
T ss_pred cccchHHHHHHHHhccccC-ChHHHHHHHHHHHH---HHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3456668999999998875 54445455444443 3222221 1112356788899977 57999999999999
Q ss_pred HHhcCChHHHHHHHHcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHH
Q 015951 195 KASQNNPLVQKQVLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 273 (397)
Q Consensus 195 ~~aqNNp~~Q~~vl~~g~lp~Ll~LL-~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~ 273 (397)
.++.--|..-..++++++||.|+.-| .-+-..+++.++.||=-|.|.||. +++++||+...+..|.=- ..-.|+
T Consensus 238 yl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDFF--Si~aQR 312 (1051)
T KOG0168|consen 238 YLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDFF--SIHAQR 312 (1051)
T ss_pred HHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHHH--HHHHHH
Confidence 99999999999999999999999554 445578999999999999999985 777899999999888632 345899
Q ss_pred HHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHH
Q 015951 274 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 353 (397)
Q Consensus 274 kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~L 353 (397)
+|.....|.|.+ ..++....+. ..++.|..+|...|..+.|.++.|+..++.......+.+.+-|.. .+++..
T Consensus 313 ~AlaiaaN~Cks----i~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~ 385 (1051)
T KOG0168|consen 313 VALAIAANCCKS----IRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNI 385 (1051)
T ss_pred HHHHHHHHHHhc----CCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHH
Confidence 999999999974 4555555554 368899999999999999999999999997755455566544443 234444
Q ss_pred HHHhHHhhhhhhhhhhHHhHHHHH
Q 015951 354 RQQLQEVMLEEDQRDYAMDVEALR 377 (397)
Q Consensus 354 r~~~~~l~~~e~~~~~~~~l~~~~ 377 (397)
.+-+.--..--....|+.++--+.
T Consensus 386 ~qLlsvt~t~Ls~~~~~~vIrmls 409 (1051)
T KOG0168|consen 386 QQLLSVTPTILSNGTYTGVIRMLS 409 (1051)
T ss_pred HHHHhcCcccccccchhHHHHHHH
Confidence 444332233445777887764443
No 27
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=98.37 E-value=4.8e-06 Score=93.67 Aligned_cols=212 Identities=15% Similarity=0.118 Sum_probs=167.3
Q ss_pred HHHHHHhcc-CCCCchhHHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-HHHHHHHcCcHHHHHHhhcC-C
Q 015951 148 ALQELLILV-EPIDNANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKS-S 223 (397)
Q Consensus 148 AL~~L~~Lv-e~iDnA~~~~~lGG-l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~-~Q~~vl~~g~lp~Ll~LL~s-~ 223 (397)
|+-.|-+|. -++.|...+|...| +..||..|.+...++..-.+.+|.++.=+-.. .+..+.+.|-+-.|....-. .
T Consensus 371 a~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~ 450 (2195)
T KOG2122|consen 371 AGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK 450 (2195)
T ss_pred HHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc
Confidence 444555554 56778888998855 77888999999999999999999999866444 45556677888888876543 3
Q ss_pred CHHHHHHHHHHHHHHhcCChhcHHHHHhc-CcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015951 224 FVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 300 (397)
Q Consensus 224 ~~~v~~kAl~ALS~LiR~~~~~~~~f~~~-gGi~~L~~lL~s~--~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 300 (397)
.+..-+..|.||-||..|+..+...|+.- |.+.+|+..|.-. +...++...+-..|.|..+.. ...+..++.+.+
T Consensus 451 kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~I--At~E~yRQILR~ 528 (2195)
T KOG2122|consen 451 KESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLI--ATCEDYRQILRR 528 (2195)
T ss_pred ccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHh--hccchHHHHHHH
Confidence 34455667888888888999999999875 7799999999743 445677778888888876532 345678899999
Q ss_pred CCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHhh
Q 015951 301 RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVM 361 (397)
Q Consensus 301 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l~ 361 (397)
++++..|.++|++....++.+++.+|+||..-+....+.+.+.+...-+.+.+++.+....
T Consensus 529 ~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa 589 (2195)
T KOG2122|consen 529 HNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSKHKMIA 589 (2195)
T ss_pred hhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhhhhhhh
Confidence 9999999999999999999999999999999988888888878887777777777766543
No 28
>PRK09687 putative lyase; Provisional
Probab=98.27 E-value=3e-05 Score=75.97 Aligned_cols=169 Identities=10% Similarity=0.030 Sum_probs=89.6
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 207 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~v 207 (397)
+..+++.|.++ +...+..|...|..+ . .-..++.+..+++++++.+|..|+++||.+-... ..
T Consensus 25 ~~~L~~~L~d~--d~~vR~~A~~aL~~~----~------~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~-~~---- 87 (280)
T PRK09687 25 DDELFRLLDDH--NSLKRISSIRVLQLR----G------GQDVFRLAIELCSSKNPIERDIGADILSQLGMAK-RC---- 87 (280)
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHhc----C------cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cc----
Confidence 45566666555 345666666666432 1 1124556667777777788888887777764211 11
Q ss_pred HHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhcHHHHH--------------------------hcCcHHHHHH
Q 015951 208 LELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--------------------------VEAGDLMLQD 260 (397)
Q Consensus 208 l~~g~lp~Ll~L-L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~--------------------------~~gGi~~L~~ 260 (397)
....+|.|..+ +++++..||..|+.+|+.+....+.....++ ....++.|+.
T Consensus 88 -~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~ 166 (280)
T PRK09687 88 -QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLIN 166 (280)
T ss_pred -hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHH
Confidence 11245666666 4444566777777777766322210000000 0113455555
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951 261 ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 330 (397)
Q Consensus 261 lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 330 (397)
+|.++ +..+|..|++.|..+.. .....++.|+.+|...+.+|+..|+.+|..+-
T Consensus 167 ~L~d~--~~~VR~~A~~aLg~~~~--------------~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~ 220 (280)
T PRK09687 167 LLKDP--NGDVRNWAAFALNSNKY--------------DNPDIREAFVAMLQDKNEEIRIEAIIGLALRK 220 (280)
T ss_pred HhcCC--CHHHHHHHHHHHhcCCC--------------CCHHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence 55544 22355555555555421 01235566777777777777777776666543
No 29
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=98.26 E-value=1.3e-05 Score=77.16 Aligned_cols=103 Identities=13% Similarity=0.096 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHH
Q 015951 182 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQD 260 (397)
Q Consensus 182 ~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~ 260 (397)
+..+...|..+|.-+|-.+|.+|..|....++..|+.+|+. .++.++..++.+|.+++.++|.++..|-+.+|+..++.
T Consensus 104 ~~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ 183 (257)
T PF08045_consen 104 NDSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCS 183 (257)
T ss_pred hhHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHH
Confidence 45567889999999999999999999999999999999954 45789999999999999999999999999999999999
Q ss_pred hhcCCCccHHHHHHHHHHHHHHhh
Q 015951 261 ILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 261 lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
++++.+.+..+|.|.+-+|+-...
T Consensus 184 llk~~~~~~~~r~K~~EFL~fyl~ 207 (257)
T PF08045_consen 184 LLKSKSTDRELRLKCIEFLYFYLM 207 (257)
T ss_pred HHccccccHHHhHHHHHHHHHHHc
Confidence 999988888899999888776654
No 30
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=9.6e-05 Score=79.55 Aligned_cols=204 Identities=22% Similarity=0.234 Sum_probs=162.2
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCC------c-----------hhHHHhc-CCHHHHHHhcCCCCHHH
Q 015951 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------N-----------ANDLSKL-GGLSVLVGQLNHPDTDI 185 (397)
Q Consensus 124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD------n-----------A~~~~~l-GGl~~Li~lL~s~~~~i 185 (397)
-+.-|+-+|.+|...-.++|-...+|+.+..++..-| + |..|++. +-+..|+.++..-+-.|
T Consensus 59 ga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~V 138 (970)
T KOG0946|consen 59 GAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHV 138 (970)
T ss_pred HHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhh
Confidence 3455888999998877787877888998888775432 2 4556666 45777789999999999
Q ss_pred HHHHHHHHHHHhcCC-hHHHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc
Q 015951 186 RKISAWILGKASQNN-PLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG 263 (397)
Q Consensus 186 r~~Aa~vLg~~aqNN-p~~Q~~vl~~-g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~ 263 (397)
|..|...|.++..+- +++|++++.. -+|.+|+.+|.+.-+.+|-.|++-|+.++|+++..|+.+.=.|.+.-|..++.
T Consensus 139 R~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIe 218 (970)
T KOG0946|consen 139 RLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIE 218 (970)
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence 999999999988764 5688888865 68999999999988889999999999999999988887777899999999987
Q ss_pred CCC--ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC---C----------hHHHHHHHHHHHH
Q 015951 264 NSS--FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---D----------LDLQEKALAAIKN 328 (397)
Q Consensus 264 s~~--~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~---d----------~dv~E~aL~aL~~ 328 (397)
... +.--+...+++++.+|.. .+......|.+.++++.|..+|..+ | ..-.-.+|.+++.
T Consensus 219 eEGg~dGgIVveDCL~ll~NLLK-----~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~ 293 (970)
T KOG0946|consen 219 EEGGLDGGIVVEDCLILLNNLLK-----NNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRS 293 (970)
T ss_pred hcCCCCCcchHHHHHHHHHHHHh-----hCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHH
Confidence 431 222378899999999996 3677888999999999999988753 2 1223456777777
Q ss_pred HhcC
Q 015951 329 LLQL 332 (397)
Q Consensus 329 L~~~ 332 (397)
|+.-
T Consensus 294 lVsP 297 (970)
T KOG0946|consen 294 LVSP 297 (970)
T ss_pred hcCC
Confidence 7764
No 31
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=98.23 E-value=1.4e-05 Score=85.85 Aligned_cols=135 Identities=15% Similarity=0.107 Sum_probs=113.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCC
Q 015951 212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 291 (397)
Q Consensus 212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~ 291 (397)
-+|..+++|.+..+.++..|.+-|--+++++..+...+.+.|||+.|+.+|.++ ...+++.|++++.||+.. ..+
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~--~~evq~~acgaLRNLvf~---~~~ 308 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR--NDEVQRQACGALRNLVFG---KST 308 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC--cHHHHHHHHHHHHhhhcc---cCC
Confidence 478899999999999999999999999999999999999999999999999987 446899999999999975 234
Q ss_pred CCcchhHHhCCcHHHHHHhccC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHh
Q 015951 292 KVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQL 357 (397)
Q Consensus 292 ~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~ 357 (397)
.+.+-.+.+++.++.++.+|+. .|.+++|.+...|+||.+.. .+...+. .+.|..|..+.
T Consensus 309 ~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D-~lK~~ii-----~~al~tLt~~v 369 (717)
T KOG1048|consen 309 DSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSND-ALKMLII-----TSALSTLTDNV 369 (717)
T ss_pred cccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchh-HHHHHHH-----HHHHHHHHHhh
Confidence 4677788999999999999997 58899999999999999873 3444333 55566665543
No 32
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=98.23 E-value=1.2e-05 Score=75.49 Aligned_cols=186 Identities=16% Similarity=0.157 Sum_probs=118.6
Q ss_pred hCCCCCHHHHHHHHHHHHhccCCC---CchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Q 015951 136 NNSTLSLEDSQRALQELLILVEPI---DNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 210 (397)
Q Consensus 136 ~~~~~s~e~k~~AL~~L~~Lve~i---DnA~~~~~l--GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~ 210 (397)
.+.+.+=+.+..|++.|..++... +....|... .-+..++..+++....|-..|+.+++.++..-...-+.+.+
T Consensus 15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~- 93 (228)
T PF12348_consen 15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYAD- 93 (228)
T ss_dssp HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHH-
T ss_pred cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHH-
Confidence 455567788999999999988654 444444332 34556777888888899999999999999764333333322
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015951 211 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 290 (397)
Q Consensus 211 g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~ 290 (397)
..+|.|++.+.+++..++..|..+|-.++.+.+..... + ...+...+.++ +..+|..++..+..++..
T Consensus 94 ~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-~----~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~----- 161 (228)
T PF12348_consen 94 ILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-L----LEILSQGLKSK--NPQVREECAEWLAIILEK----- 161 (228)
T ss_dssp HHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-H----HHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-H----HHHHHHHHhCC--CHHHHHHHHHHHHHHHHH-----
Confidence 47999999999988889999999999999876611111 1 34556666666 567899999999988753
Q ss_pred CCCcchhHHh----CCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951 291 HKVEPPLFRD----RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 291 ~~~~~~~l~~----~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 334 (397)
.+.....+.. ..+++.+...+...++++|+.|-.++..+.+.-+
T Consensus 162 ~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 162 WGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp -----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred ccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 2211222222 3477788888999999999999999999987643
No 33
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=98.19 E-value=4.1e-06 Score=57.82 Aligned_cols=41 Identities=22% Similarity=0.382 Sum_probs=38.6
Q ss_pred ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 015951 200 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 240 (397)
Q Consensus 200 Np~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR 240 (397)
||+.++.+++.|++|+|+++|++++.+++..|+|||++|++
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 57889999999999999999999999999999999999974
No 34
>PRK09687 putative lyase; Provisional
Probab=98.19 E-value=2.7e-05 Score=76.29 Aligned_cols=157 Identities=12% Similarity=0.051 Sum_probs=104.4
Q ss_pred CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcC-------------------C
Q 015951 141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ-LNHPDTDIRKISAWILGKASQN-------------------N 200 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~l-L~s~~~~ir~~Aa~vLg~~aqN-------------------N 200 (397)
++..|..|...|.++-..-. . .-..++.|..+ ++.+++.||..|+.+||.++.. +
T Consensus 67 d~~vR~~A~~aLg~lg~~~~-~----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKR-C----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCcc-c----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCC
Confidence 45667777777766433211 0 01234555555 5667777888888777776432 2
Q ss_pred hHHHHHHHHc-------CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHH
Q 015951 201 PLVQKQVLEL-------GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 273 (397)
Q Consensus 201 p~~Q~~vl~~-------g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~ 273 (397)
+.++..+... .+++.|+.+|++++..+|..|+++|+.+--+++ ..++.|+.+|.+. +..+|.
T Consensus 142 ~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~~L~~~L~D~--~~~VR~ 210 (280)
T PRK09687 142 TNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIREAFVAMLQDK--NEEIRI 210 (280)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHHHHHHHhcCC--ChHHHH
Confidence 2333333321 368889999998888899999999998821121 4678899999877 556899
Q ss_pred HHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951 274 KAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 274 kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 331 (397)
.|++.|..+-. ..+++.|+..|..++ ++..+..||+.+..
T Consensus 211 ~A~~aLg~~~~----------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~ 250 (280)
T PRK09687 211 EAIIGLALRKD----------------KRVLSVLIKELKKGT--VGDLIIEAAGELGD 250 (280)
T ss_pred HHHHHHHccCC----------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCC
Confidence 99999887531 357899999999876 56667766666653
No 35
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=98.09 E-value=8e-06 Score=59.72 Aligned_cols=55 Identities=20% Similarity=0.405 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015951 183 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238 (397)
Q Consensus 183 ~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~L 238 (397)
+.+|..|+|+||++++..+.....+.. .++|.|+.+|.++++.||..|++||++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~-~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLP-ELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHH-HHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 578999999999999998877766544 5999999999998899999999999975
No 36
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=98.09 E-value=0.00031 Score=71.25 Aligned_cols=243 Identities=18% Similarity=0.161 Sum_probs=160.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchh-HHHhc------CCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015951 125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-DLSKL------GGLSVLVGQLNHPDTDIRKISAWILGKAS 197 (397)
Q Consensus 125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~-~~~~l------GGl~~Li~lL~s~~~~ir~~Aa~vLg~~a 197 (397)
++..+-.+..++... .++...-+|--+.++...-..+. -|+.. --|.+.+++|...+.-+...++++|+.++
T Consensus 64 ~~~v~~fi~LlS~~~-kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la 142 (442)
T KOG2759|consen 64 AQYVKTFINLLSHID-KDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA 142 (442)
T ss_pred HHHHHHHHHHhchhh-hHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence 366666666665543 33455555555555443322222 23322 35899999999999999999999999999
Q ss_pred cCChHHHHHHHHcC-cHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015951 198 QNNPLVQKQVLELG-ALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 275 (397)
Q Consensus 198 qNNp~~Q~~vl~~g-~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA 275 (397)
++-+. ...-.+.. ....|-.++++ .+.....-|+.+|..++|. ++-+..|+.++|+..|+.++.+...+..+|-..
T Consensus 143 ~~g~~-~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqs 220 (442)
T KOG2759|consen 143 CFGNC-KMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKCGFQLQYQS 220 (442)
T ss_pred Hhccc-cccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCcchhHHHHH
Confidence 86442 11111111 12333344444 4456677888899999986 566899999999999999996555688899999
Q ss_pred HHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCCh------HHHHHHHhcCChHH
Q 015951 276 VSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRT------TEALVLKDFCGLDT 348 (397)
Q Consensus 276 ~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~------~~r~~~~~~~gL~~ 348 (397)
+++++-|.. +|...+.+..-+.++.|+++++.. -..|..-++.++.|+..-++ .....+. .|++.+
T Consensus 221 ifciWlLtF------n~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv-~~~v~k 293 (442)
T KOG2759|consen 221 IFCIWLLTF------NPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV-LCKVLK 293 (442)
T ss_pred HHHHHHhhc------CHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH-hcCchH
Confidence 999999986 566667788889999999999875 55677777888889888763 1222333 466766
Q ss_pred HHHHHHHHhHHhhhhhhhhhhHHhHHHHHHHHHHH
Q 015951 349 ALERLRQQLQEVMLEEDQRDYAMDVEALRREVELI 383 (397)
Q Consensus 349 ~L~~Lr~~~~~l~~~e~~~~~~~~l~~~~~e~~~~ 383 (397)
.+..|..+ .-.||| --+|++.++++...-
T Consensus 294 ~l~~L~~r---kysDED---L~~di~~L~e~L~~s 322 (442)
T KOG2759|consen 294 TLQSLEER---KYSDED---LVDDIEFLTEKLKNS 322 (442)
T ss_pred HHHHHHhc---CCCcHH---HHHHHHHHHHHHHHH
Confidence 66655433 233442 233455555554443
No 37
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=98.02 E-value=1.8e-05 Score=62.65 Aligned_cols=87 Identities=21% Similarity=0.287 Sum_probs=69.5
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951 171 LSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 249 (397)
Q Consensus 171 l~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f 249 (397)
++.|++.| +++++.+|..|+++||.+- .+ .++|.|+.+++++++.+|..|++||+.+-
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~--~~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG--DP---------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT--HH---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC--CH---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 57899988 9999999999999999542 22 45999999999989999999999999761
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015951 250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 280 (397)
Q Consensus 250 ~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~ 280 (397)
....++.|..++.++. +..+|..|+..|+
T Consensus 60 -~~~~~~~L~~~l~~~~-~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDDD-DEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence 2348889999998763 4456777777663
No 38
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=97.97 E-value=0.00044 Score=76.51 Aligned_cols=202 Identities=17% Similarity=0.145 Sum_probs=159.0
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015951 122 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN 200 (397)
Q Consensus 122 ~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~-~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN 200 (397)
.++++.+-.-+++|-+. --|.+||.-|..+++-=--|-++. ..|-+|.++++|.++..++|-.=..+=+.+-.=.
T Consensus 468 r~PPeQLPiVLQVLLSQ----vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD 543 (1387)
T KOG1517|consen 468 RTPPEQLPIVLQVLLSQ----VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVD 543 (1387)
T ss_pred CCChHhcchHHHHHHHH----HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcC
Confidence 45566666666666442 346778887777665433454443 3588999999999999999999999999988888
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCC-C--HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015951 201 PLVQKQVLELGALSKLMKMVKSS-F--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 277 (397)
Q Consensus 201 p~~Q~~vl~~g~lp~Ll~LL~s~-~--~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~ 277 (397)
|.||...++.++-...++.|..+ . ++-|.-|.+-|+.++++|+.+|....+.+-+.+....|.++. ..-+|.=.+-
T Consensus 544 ~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~-~pLLrQW~~i 622 (1387)
T KOG1517|consen 544 PSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDP-EPLLRQWLCI 622 (1387)
T ss_pred chhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCc-cHHHHHHHHH
Confidence 99999999999999999999873 2 477889999999999999999999999999998889898753 4568888888
Q ss_pred HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951 278 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 278 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 333 (397)
+|.-|-.. .+..+=.=.+.+..+.|..+|+.+-++||..|+.||+++....
T Consensus 623 cLG~LW~d-----~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 623 CLGRLWED-----YDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred HHHHHhhh-----cchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 88887642 1222111235677888999999999999999999999999864
No 39
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.92 E-value=8.5e-05 Score=75.48 Aligned_cols=183 Identities=15% Similarity=0.113 Sum_probs=131.8
Q ss_pred hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCC----C---HHHHHHHHHHHHHHh
Q 015951 167 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----F---VEEAVKALYTVSSLI 239 (397)
Q Consensus 167 ~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~----~---~~v~~kAl~ALS~Li 239 (397)
..|.+++|.+..+|++.++-.+.++++|++|..|.+.+..|.+.||-..++..|+.. + .+...-+..-|+|.+
T Consensus 85 ~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~ 164 (604)
T KOG4500|consen 85 DAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI 164 (604)
T ss_pred HHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence 357788999999999999999999999999999999999999999977777777643 2 234566778889999
Q ss_pred cCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHH
Q 015951 240 RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDL 318 (397)
Q Consensus 240 R~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv 318 (397)
-++..-+.+..++|.++.|..++.-+-.+..+-.+......+|++- ..+-..+...+..+...++.++.+. ++|+
T Consensus 165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~----~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~ 240 (604)
T KOG4500|consen 165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSF----VCEMLYPFCKDCSLVFMLLQLLPSMVREDI 240 (604)
T ss_pred CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHH----HHHhhhhhhccchHHHHHHHHHHHhhccch
Confidence 8999999999999999999988764322333333333333333321 0122345566778888888888764 7889
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHH
Q 015951 319 QEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 354 (397)
Q Consensus 319 ~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr 354 (397)
.|.....+.-.+.... -.-.+.+.|-++..++.+|
T Consensus 241 ~eM~feila~~aend~-Vkl~la~~gl~e~~~~lv~ 275 (604)
T KOG4500|consen 241 DEMIFEILAKAAENDL-VKLSLAQNGLLEDSIDLVR 275 (604)
T ss_pred hhHHHHHHHHHhcCcc-eeeehhhcchHHHHHHHHH
Confidence 9999988888887654 3334554554466666443
No 40
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.91 E-value=0.00064 Score=76.68 Aligned_cols=27 Identities=11% Similarity=0.273 Sum_probs=16.9
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015951 255 DLMLQDILGNSSFEIRLHRKAVSLVGDLA 283 (397)
Q Consensus 255 i~~L~~lL~s~~~d~klr~kA~~lL~~L~ 283 (397)
++.|..+++++ +..+|..|+..|..+-
T Consensus 777 ~~~L~~ll~D~--d~~VR~aA~~aLg~~g 803 (897)
T PRK13800 777 GDAVRALTGDP--DPLVRAAALAALAELG 803 (897)
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHhcC
Confidence 46666666665 4456767766666553
No 41
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.88 E-value=0.0006 Score=76.88 Aligned_cols=131 Identities=16% Similarity=0.129 Sum_probs=94.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHh----------cCChHHHHHHHHc---------CcHHHHHHhhcCCCHHHHHHH
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKAS----------QNNPLVQKQVLEL---------GALSKLMKMVKSSFVEEAVKA 231 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~a----------qNNp~~Q~~vl~~---------g~lp~Ll~LL~s~~~~v~~kA 231 (397)
...++..|.++++.+|..|+..|+.+- ..++.+|..+.+. ..++.|+.+++++++.+|..|
T Consensus 716 ~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA 795 (897)
T PRK13800 716 AALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAA 795 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHH
Confidence 455666777777777777777776531 2345555544432 237889999998888999999
Q ss_pred HHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc
Q 015951 232 LYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT 311 (397)
Q Consensus 232 l~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL 311 (397)
+.+|+.+- .+. ..+..|...|.++ +..+|..|+.+|..+-. ...++.|+.+|
T Consensus 796 ~~aLg~~g--~~~--------~~~~~l~~aL~d~--d~~VR~~Aa~aL~~l~~----------------~~a~~~L~~~L 847 (897)
T PRK13800 796 LAALAELG--CPP--------DDVAAATAALRAS--AWQVRQGAARALAGAAA----------------DVAVPALVEAL 847 (897)
T ss_pred HHHHHhcC--Ccc--------hhHHHHHHHhcCC--ChHHHHHHHHHHHhccc----------------cchHHHHHHHh
Confidence 99999872 221 1224578888876 56789999999987642 23458899999
Q ss_pred cCCChHHHHHHHHHHHHH
Q 015951 312 ASADLDLQEKALAAIKNL 329 (397)
Q Consensus 312 ~~~d~dv~E~aL~aL~~L 329 (397)
+.++..||..|+.+|..+
T Consensus 848 ~D~~~~VR~~A~~aL~~~ 865 (897)
T PRK13800 848 TDPHLDVRKAAVLALTRW 865 (897)
T ss_pred cCCCHHHHHHHHHHHhcc
Confidence 999999999999999886
No 42
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.88 E-value=6.7e-05 Score=62.51 Aligned_cols=67 Identities=18% Similarity=0.194 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015951 185 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYV 251 (397)
Q Consensus 185 ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~--~~~v~~kAl~ALS~LiR~~~~~~~~f~~ 251 (397)
+|..-..+||+++.+|+.+|+.+.+.|+||.+++.-.-+ ++-++.-|++||-+++.+|+.+|..+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 467778999999999999999999999999999876543 4678999999999999999999887654
No 43
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=97.86 E-value=1.4e-05 Score=55.04 Aligned_cols=38 Identities=32% Similarity=0.691 Sum_probs=35.8
Q ss_pred CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015951 160 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKAS 197 (397)
Q Consensus 160 DnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~a 197 (397)
+|...+++.||+|+|+++|+++++++|..|+|+|++++
T Consensus 3 ~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 3 ENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp HHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 56778999999999999999999999999999999987
No 44
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=97.84 E-value=0.00018 Score=73.22 Aligned_cols=148 Identities=16% Similarity=0.125 Sum_probs=117.8
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc
Q 015951 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLEL----GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 254 (397)
Q Consensus 179 ~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~----g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gG 254 (397)
...+..++..+..|++..+. ||..+..|.++ +++..|.+..+|++.++......||+|++..|.+++.+|.+.||
T Consensus 52 ~~~~~tv~~~qssC~A~~sk-~ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgG 130 (604)
T KOG4500|consen 52 MTASDTVYLFQSSCLADRSK-NEVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGG 130 (604)
T ss_pred eeccchhhhhhHHHHHHHhh-hHHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCC
Confidence 34567889999999999995 57677777665 66888888888888899999999999999999999999999999
Q ss_pred HHHHHHhhcCC-----CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHHHHHHH
Q 015951 255 DLMLQDILGNS-----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAIK 327 (397)
Q Consensus 255 i~~L~~lL~s~-----~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~dv~E~aL~aL~ 327 (397)
-+++++.|+.- ....++-.-+..++.|-.- .+.+.+..+.+.|+++.|+..+-- .+....|+.+....
T Consensus 131 aqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l-----~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~ 205 (604)
T KOG4500|consen 131 AQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL-----DSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFF 205 (604)
T ss_pred ceehHhhhccccccCCccHHHHHHHHHHHHHHhhC-----CcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccc
Confidence 88888887631 1233555666777777663 466788889999999999887643 46777788888888
Q ss_pred HHhcC
Q 015951 328 NLLQL 332 (397)
Q Consensus 328 ~L~~~ 332 (397)
+|++.
T Consensus 206 nlls~ 210 (604)
T KOG4500|consen 206 NLLSF 210 (604)
T ss_pred cHHHH
Confidence 88765
No 45
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.83 E-value=0.00079 Score=75.24 Aligned_cols=174 Identities=16% Similarity=0.120 Sum_probs=128.2
Q ss_pred HHHHH----HhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH
Q 015951 171 LSVLV----GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 246 (397)
Q Consensus 171 l~~Li----~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~ 246 (397)
+|++. .+|.|++..-|..|..+|+.++...++.-...+. ..++..+..|++..+-||-.|+.||+.+..++.+-.
T Consensus 346 ~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~-~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~i 424 (1075)
T KOG2171|consen 346 LPPLFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLP-KILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEI 424 (1075)
T ss_pred hHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHH-HHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHH
Confidence 55555 4678999999999999999999887665555443 477888888999889999999999999999998888
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC-cchhHHhCCcHH-HHHHhccCCChHHHHHHHH
Q 015951 247 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EPPLFRDRFFLK-SVVDLTASADLDLQEKALA 324 (397)
Q Consensus 247 ~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~-~~~~l~~~g~v~-~Lv~lL~~~d~dv~E~aL~ 324 (397)
+.....--++.|+..+.+. .++|++..|+.++-++..+ ...+ +.+.+ .+++. .+.-++.++.+.++|.++.
T Consensus 425 qk~~~e~l~~aL~~~ld~~-~~~rV~ahAa~al~nf~E~----~~~~~l~pYL--d~lm~~~l~~L~~~~~~~v~e~vvt 497 (1075)
T KOG2171|consen 425 QKKHHERLPPALIALLDST-QNVRVQAHAAAALVNFSEE----CDKSILEPYL--DGLMEKKLLLLLQSSKPYVQEQAVT 497 (1075)
T ss_pred HHHHHHhccHHHHHHhccc-CchHHHHHHHHHHHHHHHh----CcHHHHHHHH--HHHHHHHHHHHhcCCchhHHHHHHH
Confidence 8887777888999999887 3678999999999998753 1222 22221 23444 3344567788999999999
Q ss_pred HHHHHhcCChHHHHHHHhcCChHHHHHHHHHHh
Q 015951 325 AIKNLLQLRTTEALVLKDFCGLDTALERLRQQL 357 (397)
Q Consensus 325 aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~ 357 (397)
||.+.+... ...|. .-.+.++..|+.-+
T Consensus 498 aIasvA~AA---~~~F~--pY~d~~Mp~L~~~L 525 (1075)
T KOG2171|consen 498 AIASVADAA---QEKFI--PYFDRLMPLLKNFL 525 (1075)
T ss_pred HHHHHHHHH---hhhhH--hHHHHHHHHHHHHH
Confidence 999999653 34443 22344445454443
No 46
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.82 E-value=2.3e-05 Score=66.92 Aligned_cols=101 Identities=23% Similarity=0.303 Sum_probs=72.3
Q ss_pred HHHHHHHHhccccccccCCCCHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCC
Q 015951 81 GMLQWAIAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID 160 (397)
Q Consensus 81 glLkwsi~~~~~~~~~~~~~s~e~l~~r~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD 160 (397)
|.|.||--|.++ +|=+|-...| ..++.+++|.++++|..+. ++.....|+.+|.++|....
T Consensus 16 g~L~WSP~H~se-----------------~FW~ENa~kf-~~~~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p 76 (119)
T PF11698_consen 16 GHLEWSPVHKSE-----------------KFWRENADKF-EENNFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYP 76 (119)
T ss_dssp T-----GGGG-H-----------------HHHHHHSGGG-SSGGGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-G
T ss_pred CCccccCCCCCc-----------------cHHHHHHHHH-HHcccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHCh
Confidence 778888666432 2344444444 4578999999999996544 55667789999999999988
Q ss_pred chhHHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015951 161 NANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN 200 (397)
Q Consensus 161 nA~~~~-~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN 200 (397)
+.+.++ ++|+=..+++++++++++||..|..++..+..+|
T Consensus 77 ~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~~ 117 (119)
T PF11698_consen 77 NGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVNN 117 (119)
T ss_dssp GGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence 888777 5677778889999999999999999999887654
No 47
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=97.81 E-value=0.00027 Score=70.01 Aligned_cols=187 Identities=18% Similarity=0.118 Sum_probs=127.8
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC----CCHHHHHHHHHHHHHHhcCChH
Q 015951 127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDIRKISAWILGKASQNNPL 202 (397)
Q Consensus 127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s----~~~~ir~~Aa~vLg~~aqNNp~ 202 (397)
.....+..+.++ +.--...|+..|..++..-+....-...+.++.++++|.+ ++.+++..|+.+++.+.. ++.
T Consensus 106 ~~~~fl~ll~~~--D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~-~~~ 182 (312)
T PF03224_consen 106 PYSPFLKLLDRN--DSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLR-SKE 182 (312)
T ss_dssp -HHHHHHH-S-S--SHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHT-SHH
T ss_pred hHHHHHHHhcCC--CHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhC-cch
Confidence 444555655544 4445666788888777654433333224456777776643 567788999999999995 688
Q ss_pred HHHHHHHcCcHHHHHHhh-----cCCC--HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015951 203 VQKQVLELGALSKLMKMV-----KSSF--VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 275 (397)
Q Consensus 203 ~Q~~vl~~g~lp~Ll~LL-----~s~~--~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA 275 (397)
.+..|.+.|+++.|..++ .+.+ ..++-.+++++-.+.. ++.....+.+.+-++.|..+++... ..|+-|-+
T Consensus 183 ~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~-KEKvvRv~ 260 (312)
T PF03224_consen 183 YRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSI-KEKVVRVS 260 (312)
T ss_dssp HHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHH
T ss_pred hHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcc-cchHHHHH
Confidence 999999999999999999 2222 3567789999987765 5677788888899999999999653 56899999
Q ss_pred HHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHH
Q 015951 276 VSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKA 322 (397)
Q Consensus 276 ~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~dv~E~a 322 (397)
+..+.||+.. ......+.++..|+++.+-.+... .|+|+.+-.
T Consensus 261 la~l~Nl~~~----~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl 305 (312)
T PF03224_consen 261 LAILRNLLSK----APKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDL 305 (312)
T ss_dssp HHHHHHTTSS----SSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHH
T ss_pred HHHHHHHHhc----cHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999862 233367777888877777666554 377776643
No 48
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.72 E-value=0.002 Score=67.40 Aligned_cols=203 Identities=17% Similarity=0.169 Sum_probs=135.9
Q ss_pred HhHHHHHHHHHhc-CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015951 107 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 185 (397)
Q Consensus 107 ~r~~~L~ea~~~~-~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~i 185 (397)
+|++-+++.+... .|.+-.......+..+. +.+.+.|.-+.-.+..+.+.-.. +..+ .+..+.+-|+++++.+
T Consensus 22 ~~~~~l~kli~~~~~G~~~~~~~~~vi~l~~--s~~~~~Krl~yl~l~~~~~~~~~---~~~l-~~n~l~kdl~~~n~~~ 95 (526)
T PF01602_consen 22 KKKEALKKLIYLMMLGYDISFLFMEVIKLIS--SKDLELKRLGYLYLSLYLHEDPE---LLIL-IINSLQKDLNSPNPYI 95 (526)
T ss_dssp HHHHHHHHHHHHHHTT---GSTHHHHHCTCS--SSSHHHHHHHHHHHHHHTTTSHH---HHHH-HHHHHHHHHCSSSHHH
T ss_pred HHHHHHHHHHHHHHcCCCCchHHHHHHHHhC--CCCHHHHHHHHHHHHHHhhcchh---HHHH-HHHHHHHhhcCCCHHH
Confidence 3555566654433 23333344455555555 33566776665555555443222 2222 4566667789999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015951 186 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 265 (397)
Q Consensus 186 r~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 265 (397)
|..|.++|++++ +|+.-+. .+|.+.+++.++++-||++|+.|+..+.+.+|..... . -++.|..+|.++
T Consensus 96 ~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~~~---~-~~~~l~~lL~d~ 164 (526)
T PF01602_consen 96 RGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLVED---E-LIPKLKQLLSDK 164 (526)
T ss_dssp HHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCHHG---G-HHHHHHHHTTHS
T ss_pred HHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHHHH---H-HHHHHhhhccCC
Confidence 999999999997 5655443 4788999999999999999999999999988775443 1 378899999766
Q ss_pred CccHHHHHHHHHHHHHH-hhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHH
Q 015951 266 SFEIRLHRKAVSLVGDL-AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTE 336 (397)
Q Consensus 266 ~~d~klr~kA~~lL~~L-~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~ 336 (397)
++.++..|+.++..+ ... +.... .-+.+++.+..++..+++-.+.+++..+..+....+..
T Consensus 165 --~~~V~~~a~~~l~~i~~~~------~~~~~--~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~ 226 (526)
T PF01602_consen 165 --DPSVVSAALSLLSEIKCND------DSYKS--LIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPED 226 (526)
T ss_dssp --SHHHHHHHHHHHHHHHCTH------HHHTT--HHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHH
T ss_pred --cchhHHHHHHHHHHHccCc------chhhh--hHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhh
Confidence 567899999999998 211 11011 11344566666667888899999998888888765543
No 49
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.71 E-value=0.0022 Score=67.12 Aligned_cols=161 Identities=16% Similarity=0.160 Sum_probs=124.2
Q ss_pred CCHHHHHHHHHHHHhcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHH
Q 015951 140 LSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 218 (397)
Q Consensus 140 ~s~e~k~~AL~~L~~Lv-e~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~ 218 (397)
.+.++|..++..+-++. ...|.. -|++.++.++.+++..+|..+--.+......+|+. .++ ++..+.+
T Consensus 18 ~~~~~~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~--~~l---~~n~l~k 86 (526)
T PF01602_consen 18 IDISKKKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPEL--LIL---IINSLQK 86 (526)
T ss_dssp THHHHHHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHH--HHH---HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhH--HHH---HHHHHHH
Confidence 34567777777776643 223222 69999999999999999999999999999999872 222 5677778
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhH
Q 015951 219 MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 298 (397)
Q Consensus 219 LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l 298 (397)
=+.++++.++.-|+.+||++. .+..... -++.+..++.++ ++.+|++|+.++..+... .|+. +
T Consensus 87 dl~~~n~~~~~lAL~~l~~i~--~~~~~~~-----l~~~v~~ll~~~--~~~VRk~A~~~l~~i~~~-----~p~~---~ 149 (526)
T PF01602_consen 87 DLNSPNPYIRGLALRTLSNIR--TPEMAEP-----LIPDVIKLLSDP--SPYVRKKAALALLKIYRK-----DPDL---V 149 (526)
T ss_dssp HHCSSSHHHHHHHHHHHHHH---SHHHHHH-----HHHHHHHHHHSS--SHHHHHHHHHHHHHHHHH-----CHCC---H
T ss_pred hhcCCCHHHHHHHHhhhhhhc--ccchhhH-----HHHHHHHHhcCC--chHHHHHHHHHHHHHhcc-----CHHH---H
Confidence 888989999999999999985 3443333 467788888887 557999999999999862 3332 3
Q ss_pred HhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015951 299 RDRFFLKSVVDLTASADLDLQEKALAAIKNL 329 (397)
Q Consensus 299 ~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 329 (397)
... +++.+..+|...|+.++..|+.++..+
T Consensus 150 ~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 150 EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 333 799999999999999999999999999
No 50
>PF05536 Neurochondrin: Neurochondrin
Probab=97.70 E-value=0.003 Score=67.50 Aligned_cols=152 Identities=16% Similarity=0.190 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCc-hh---HHHhcCCHHHHHHhcCC-------CCHHHHHHHHHH
Q 015951 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-AN---DLSKLGGLSVLVGQLNH-------PDTDIRKISAWI 192 (397)
Q Consensus 124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDn-A~---~~~~lGGl~~Li~lL~s-------~~~~ir~~Aa~v 192 (397)
..+.+++++..|+... .++|..+|--+-.++.+-|. +. .+.+.=|++-+-++|++ +....+..|..+
T Consensus 3 ~~~~l~~c~~lL~~~~--D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavsv 80 (543)
T PF05536_consen 3 QSASLEKCLSLLKSAD--DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSV 80 (543)
T ss_pred chHHHHHHHHHhccCC--cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHH
Confidence 4567899999998876 57899999999999987663 21 24455567777789977 457899999999
Q ss_pred HHHHhcCChHHH--HHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccH
Q 015951 193 LGKASQNNPLVQ--KQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 269 (397)
Q Consensus 193 Lg~~aqNNp~~Q--~~vl~~g~lp~Ll~LL~s~~~-~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~ 269 (397)
|++.|. .|... ..++ +-||.|+.++.+.+. ++...++..|.+++ .+|.+++.|++.|+++.|.+++.+. .
T Consensus 81 L~~f~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~---~ 153 (543)
T PF05536_consen 81 LAAFCR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQ---S 153 (543)
T ss_pred HHHHcC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhC---c
Confidence 999998 56554 3343 469999999988777 88889999999998 7899999999999999999999874 2
Q ss_pred HHHHHHHHHHHHHhh
Q 015951 270 RLHRKAVSLVGDLAK 284 (397)
Q Consensus 270 klr~kA~~lL~~L~~ 284 (397)
.....|..++.+++.
T Consensus 154 ~~~E~Al~lL~~Lls 168 (543)
T PF05536_consen 154 FQMEIALNLLLNLLS 168 (543)
T ss_pred chHHHHHHHHHHHHH
Confidence 467889999999886
No 51
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.69 E-value=0.0015 Score=71.08 Aligned_cols=220 Identities=14% Similarity=0.094 Sum_probs=165.7
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHhccCCCC-chhHHHhcCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951 131 AIDDLNNSTLSLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVL 208 (397)
Q Consensus 131 ~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD-nA~~~~~lGGl~~Li~-lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl 208 (397)
++..|+ .+...|-...|...|.++++-.- ..-..+..+.+|.|+. ++.=..-++-+++..+|-.+.+.+| .+++
T Consensus 216 Lv~LL~-~E~n~DIMl~AcRaltyl~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL 291 (1051)
T KOG0168|consen 216 LVALLS-HEHNFDIMLLACRALTYLCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAIL 291 (1051)
T ss_pred HHHHHh-ccccHHHHHHHHHHHHHHHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHH
Confidence 444443 44467888889999999998653 4445667799999995 7778899999999999999999887 5689
Q ss_pred HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc
Q 015951 209 ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 288 (397)
Q Consensus 209 ~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~ 288 (397)
+.|+|...+..|+--+..++++|+...+|++..-++-.-.|+ ...++.|..+|+.. |.+....++-++..++...
T Consensus 292 ~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v-~ealPlL~~lLs~~--D~k~ies~~ic~~ri~d~f-- 366 (1051)
T KOG0168|consen 292 QAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV-MEALPLLTPLLSYQ--DKKPIESVCICLTRIADGF-- 366 (1051)
T ss_pred hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH-HHHHHHHHHHHhhc--cchhHHHHHHHHHHHHHhc--
Confidence 999999999999877788999999999999987544222232 57899999999975 5577888888888888642
Q ss_pred cCCCCcchhHHhCCcHHHHHHhccCC----ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHh
Q 015951 289 NMHKVEPPLFRDRFFLKSVVDLTASA----DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEV 360 (397)
Q Consensus 289 ~~~~~~~~~l~~~g~v~~Lv~lL~~~----d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l 360 (397)
...++..+.+..+|++....+||.-. ...+.--..+.|..+++..+..+..+- .-++-..|.++-++|..-
T Consensus 367 ~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~-k~~I~~~L~~il~g~s~s 441 (1051)
T KOG0168|consen 367 QHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLL-KLDIADTLKRILQGYSKS 441 (1051)
T ss_pred ccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHH-HhhHHHHHHHHHhccCcC
Confidence 23567788899999999999998764 334555566667777776554333332 466767777777776553
No 52
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=97.61 E-value=0.00094 Score=68.67 Aligned_cols=176 Identities=18% Similarity=0.150 Sum_probs=133.1
Q ss_pred hcCCHHHHHHhcCCCCH--HHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCh
Q 015951 167 KLGGLSVLVGQLNHPDT--DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNL 243 (397)
Q Consensus 167 ~lGGl~~Li~lL~s~~~--~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~ 243 (397)
.-||+..|+.++.+++. .+|..|+.+|-.+.. .+.++.+...| +..++.+.+. ++.+.+...+.-|.++-+|+.
T Consensus 178 ~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSe 254 (832)
T KOG3678|consen 178 LDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSE 254 (832)
T ss_pred ccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhH
Confidence 34899999999988764 569999999988864 45677777766 6777777654 345778889999999999999
Q ss_pred hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHH
Q 015951 244 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKAL 323 (397)
Q Consensus 244 ~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL 323 (397)
...+.++.+||+..++--.+.. ++.+-+.++.+|.|.+.+ ..-..+..+++...-+.|.-+-.+.|.-++-+|.
T Consensus 255 et~~~Lvaa~~lD~vl~~~rRt--~P~lLRH~ALAL~N~~L~----~~~a~qrrmveKr~~EWLF~LA~skDel~R~~AC 328 (832)
T KOG3678|consen 255 ETCQRLVAAGGLDAVLYWCRRT--DPALLRHCALALGNCALH----GGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHAC 328 (832)
T ss_pred HHHHHHHhhcccchheeecccC--CHHHHHHHHHHhhhhhhh----chhHHHHHHHHhhhhhhhhhhhcchHHHHHHHHH
Confidence 9999999999999887777654 566888899999998763 2334455566667777777777777888999999
Q ss_pred HHHHHHhcCChHHHHHHHhcCChHHHHHHH
Q 015951 324 AAIKNLLQLRTTEALVLKDFCGLDTALERL 353 (397)
Q Consensus 324 ~aL~~L~~~~~~~r~~~~~~~gL~~~L~~L 353 (397)
.|+..|+...+-. +.++ ..|-..+++-+
T Consensus 329 lAV~vlat~KE~E-~~Vr-kS~TlaLVEPl 356 (832)
T KOG3678|consen 329 LAVAVLATNKEVE-REVR-KSGTLALVEPL 356 (832)
T ss_pred HHHhhhhhhhhhh-HHHh-hccchhhhhhh
Confidence 9999999886643 4455 34433444444
No 53
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.61 E-value=0.0039 Score=67.56 Aligned_cols=219 Identities=19% Similarity=0.193 Sum_probs=162.3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhc
Q 015951 121 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQ 198 (397)
Q Consensus 121 ~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s--~~~~ir~~Aa~vLg~~aq 198 (397)
.++.++.+.++.+.+.+.. =+++|..|+..|--+.... +.-+...|++++|+.|.. .++++-..|..++..+..
T Consensus 17 ~~s~aETI~kLcDRvessT-L~eDRR~A~rgLKa~srkY---R~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~ 92 (970)
T KOG0946|consen 17 QQSAAETIEKLCDRVESST-LLEDRRDAVRGLKAFSRKY---REEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTS 92 (970)
T ss_pred cccHHhHHHHHHHHHhhcc-chhhHHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence 3567788888888888764 3577777766665443322 334556799999999954 789999999999999987
Q ss_pred CCh--------H--------HHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhc-CcHHHHH
Q 015951 199 NNP--------L--------VQKQVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVE-AGDLMLQ 259 (397)
Q Consensus 199 NNp--------~--------~Q~~vl~-~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~-~~~~f~~~-gGi~~L~ 259 (397)
+.. . ..+.|++ .+-|..|+..+...+--||..++--|++++++-|. .++.+... -|+..|+
T Consensus 93 ~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lm 172 (970)
T KOG0946|consen 93 HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLM 172 (970)
T ss_pred cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHH
Confidence 752 2 2334443 36788899999888888999999999999998655 45555554 6999999
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC---C-hHHHHHHHHHHHHHhcCChH
Q 015951 260 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA---D-LDLQEKALAAIKNLLQLRTT 335 (397)
Q Consensus 260 ~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~---d-~dv~E~aL~aL~~L~~~~~~ 335 (397)
.+|.+.. .-+|-.+..+|..|.. .++.....+.=.++...|.+++... | --|.+-|+..|.+|+..+..
T Consensus 173 dlL~Dsr--E~IRNe~iLlL~eL~k-----~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~S 245 (970)
T KOG0946|consen 173 DLLRDSR--EPIRNEAILLLSELVK-----DNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNIS 245 (970)
T ss_pred HHHhhhh--hhhchhHHHHHHHHHc-----cCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcc
Confidence 9999763 3389999999999985 4555555555567777787777643 2 36889999999999999877
Q ss_pred HHHHHHhcCChHHHHH
Q 015951 336 EALVLKDFCGLDTALE 351 (397)
Q Consensus 336 ~r~~~~~~~gL~~~L~ 351 (397)
....|+ .++--+.|.
T Consensus 246 NQ~~Fr-E~~~i~rL~ 260 (970)
T KOG0946|consen 246 NQNFFR-EGSYIPRLL 260 (970)
T ss_pred hhhHHh-ccccHHHHH
Confidence 778888 555433333
No 54
>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]
Probab=97.56 E-value=0.00069 Score=77.03 Aligned_cols=181 Identities=17% Similarity=0.081 Sum_probs=137.4
Q ss_pred HHHHHHHhccCCC--CchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCcHHHHHHhhcC
Q 015951 147 RALQELLILVEPI--DNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLE-LGALSKLMKMVKS 222 (397)
Q Consensus 147 ~AL~~L~~Lve~i--DnA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~-~g~lp~Ll~LL~s 222 (397)
..-..|.+|-..- .+...|...|-+..|..+- ....+.-......+|=+++.+..+.+..|.. -|+|..|+.+|.=
T Consensus 413 V~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY 492 (2195)
T KOG2122|consen 413 VYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSY 492 (2195)
T ss_pred HHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccc
Confidence 3455666777654 4567888899999999764 4433333333344444444444444555554 4899999999985
Q ss_pred CCH----HHHH---HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc
Q 015951 223 SFV----EEAV---KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 295 (397)
Q Consensus 223 ~~~----~v~~---kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~ 295 (397)
+.+ .+.. --|.-+|++|..+.+-++...+++-+..|.+.|++. ...+..++|..|+||.. -++...
T Consensus 493 ~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~--SLTiVSNaCGTLWNLSA-----R~p~DQ 565 (2195)
T KOG2122|consen 493 EGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH--SLTIVSNACGTLWNLSA-----RSPEDQ 565 (2195)
T ss_pred cCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc--ceEEeecchhhhhhhhc-----CCHHHH
Confidence 521 2333 457778889988888888899999999999999987 45678899999999985 478889
Q ss_pred hhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951 296 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 296 ~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 334 (397)
+.|.+.|.+..|-+++.+.+..+-+-++.||.||+...+
T Consensus 566 q~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 566 QMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999998764
No 55
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=97.50 E-value=0.0006 Score=72.33 Aligned_cols=140 Identities=14% Similarity=0.144 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHHH---hccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH
Q 015951 141 SLEDSQRALQELL---ILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 217 (397)
Q Consensus 141 s~e~k~~AL~~L~---~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll 217 (397)
+.+..-.|+..+. ..|...++. +-...|..+++++|..|+..|+..+..+|.+++-.-...|..|+.+|+|..|.
T Consensus 390 d~~~~aaa~l~~~s~srsV~aL~tg--~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~l~ 467 (678)
T KOG1293|consen 390 DHDFVAAALLCLKSFSRSVSALRTG--LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDILE 467 (678)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcC--CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHHHH
Confidence 3344444444444 344444444 66778999999999999999999999999999988778899999999999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 218 KMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 218 ~LL~s~~~~v~~kAl~ALS~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
+++.+.+..+|.+++|+|..+.-+... -+.+++.-=|...|..+..++ +..+|..+..++.||.-
T Consensus 468 s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~--d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 468 SMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDP--DWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCC--CHHHHHHHHHHHHHhhc
Confidence 999999999999999999999887644 344555555777788888877 77899999999999974
No 56
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.38 E-value=0.00034 Score=47.26 Aligned_cols=39 Identities=31% Similarity=0.535 Sum_probs=36.0
Q ss_pred CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015951 160 DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ 198 (397)
Q Consensus 160 DnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aq 198 (397)
+++..+...||+++|+++|.+++++++..|+|+|++++.
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~ 41 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence 477889999999999999999999999999999999873
No 57
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=97.35 E-value=0.011 Score=61.31 Aligned_cols=157 Identities=14% Similarity=0.015 Sum_probs=119.1
Q ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHHHHHHHHc-----CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015951 171 LSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL-----GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 244 (397)
Q Consensus 171 l~~Li~lL~-s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~-----g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~ 244 (397)
...++.+|+ .+.+++.......+..+.+.+|..-..|.+. ....+++.+|..++..+..+|.+.|+.++...+.
T Consensus 55 ~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~~~ 134 (429)
T cd00256 55 VKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFGLA 134 (429)
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcCcc
Confidence 345556774 5778999999999999999999888888876 4677888899888888899999999999876543
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHH
Q 015951 245 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKA 322 (397)
Q Consensus 245 ~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~a 322 (397)
........-=++.|...+++++ +...+.-++.++..|+. .+..+..|.+.++++.|+.+|+.. +..++.++
T Consensus 135 ~~~~~~l~~~~~~l~~~l~~~~-~~~~~~~~v~~L~~LL~------~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ 207 (429)
T cd00256 135 KMEGSDLDYYFNWLKEQLNNIT-NNDYVQTAARCLQMLLR------VDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQS 207 (429)
T ss_pred ccchhHHHHHHHHHHHHhhccC-CcchHHHHHHHHHHHhC------CchHHHHHHHccCHHHHHHHHhhccccHHHHHHH
Confidence 2221111112234566666542 34567778889999885 578888898888999999999763 67899999
Q ss_pred HHHHHHHhcCCh
Q 015951 323 LAAIKNLLQLRT 334 (397)
Q Consensus 323 L~aL~~L~~~~~ 334 (397)
+.|++-|+-..+
T Consensus 208 ll~lWlLSF~~~ 219 (429)
T cd00256 208 IFCIWLLTFNPH 219 (429)
T ss_pred HHHHHHHhccHH
Confidence 999999987754
No 58
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.008 Score=67.50 Aligned_cols=179 Identities=18% Similarity=0.225 Sum_probs=119.9
Q ss_pred CHHHHHHHHHHHHhccCCCCchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHHcCcHHHHH
Q 015951 141 SLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLM 217 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iDnA~~~~~l--GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqN-Np~~Q~~vl~~g~lp~Ll 217 (397)
+...|..||-.|.-+.|-- .+.+.+. .-++.++++|+.++|-||..|+.+||-++.+ -|..|....+. .+|.|+
T Consensus 361 ~w~~R~AaL~Als~i~EGc--~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~-l~~aL~ 437 (1075)
T KOG2171|consen 361 EWKERHAALLALSVIAEGC--SDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHER-LPPALI 437 (1075)
T ss_pred CHHHHHHHHHHHHHHHccc--HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHh-ccHHHH
Confidence 5668888998888877642 2222221 3466677889999999999999999999987 45666666554 778899
Q ss_pred HhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHH-HHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc
Q 015951 218 KMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 295 (397)
Q Consensus 218 ~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~-~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~ 295 (397)
..+++.. ..++..|..|+=+..-.++...-.=+=-+-++ .+..++.++ ...+|..++++|.+.+. .....+.
T Consensus 438 ~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~--~~~v~e~vvtaIasvA~----AA~~~F~ 511 (1075)
T KOG2171|consen 438 ALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSS--KPYVQEQAVTAIASVAD----AAQEKFI 511 (1075)
T ss_pred HHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHH----HHhhhhH
Confidence 9988754 56777788888777666655433222234444 344444444 56799999999999986 2344555
Q ss_pred hhHHhCCcHHHHHHhccCCC-hHHH---HHHHHHHHHHh
Q 015951 296 PLFRDRFFLKSVVDLTASAD-LDLQ---EKALAAIKNLL 330 (397)
Q Consensus 296 ~~l~~~g~v~~Lv~lL~~~d-~dv~---E~aL~aL~~L~ 330 (397)
+++ .-+++.|...|.+.+ .+.+ -++..|+.-+.
T Consensus 512 pY~--d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~ 548 (1075)
T KOG2171|consen 512 PYF--DRLMPLLKNFLQNADDKDLRELRGKTMECLSLIA 548 (1075)
T ss_pred hHH--HHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHH
Confidence 554 246777777776653 4444 45555554444
No 59
>PTZ00429 beta-adaptin; Provisional
Probab=97.33 E-value=0.031 Score=61.78 Aligned_cols=165 Identities=15% Similarity=0.103 Sum_probs=124.6
Q ss_pred CHHHHHHHHHHHHhcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHh
Q 015951 141 SLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 219 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lv-e~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~L 219 (397)
+...|..++..+-.+. ...|... +++.++.++.+++.++|....-.+.+.+..+|+.- + -++..|.+=
T Consensus 45 ~~~~kk~alKkvIa~mt~G~DvS~------LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pela--l---LaINtl~KD 113 (746)
T PTZ00429 45 DSYRKKAAVKRIIANMTMGRDVSY------LFVDVVKLAPSTDLELKKLVYLYVLSTARLQPEKA--L---LAVNTFLQD 113 (746)
T ss_pred CHHHHHHHHHHHHHHHHCCCCchH------HHHHHHHHhCCCCHHHHHHHHHHHHHHcccChHHH--H---HHHHHHHHH
Confidence 3466777776555433 4455433 77888899999999999999999999998887642 2 256777888
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015951 220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 299 (397)
Q Consensus 220 L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~ 299 (397)
+.+.++-+|.-|+..+|++ |. +...+. .+..+.+++.++ ++.+|++|+.++..+.. .+++ .+.
T Consensus 114 l~d~Np~IRaLALRtLs~I-r~-~~i~e~-----l~~~lkk~L~D~--~pYVRKtAalai~Kly~-----~~pe---lv~ 176 (746)
T PTZ00429 114 TTNSSPVVRALAVRTMMCI-RV-SSVLEY-----TLEPLRRAVADP--DPYVRKTAAMGLGKLFH-----DDMQ---LFY 176 (746)
T ss_pred cCCCCHHHHHHHHHHHHcC-Cc-HHHHHH-----HHHHHHHHhcCC--CHHHHHHHHHHHHHHHh-----hCcc---ccc
Confidence 8888889999999999987 32 222222 345678888876 67899999999999874 2333 345
Q ss_pred hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951 300 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 300 ~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 333 (397)
+.|+++.|.++|...|+.|+-.|+.+|..+....
T Consensus 177 ~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 177 QQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred ccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 6789999999999999999999999999987653
No 60
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=97.33 E-value=0.0079 Score=61.27 Aligned_cols=203 Identities=15% Similarity=0.107 Sum_probs=145.7
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCC
Q 015951 123 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNN 200 (397)
Q Consensus 123 ~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s--~~~~ir~~Aa~vLg~~aqNN 200 (397)
++.++-+..++.+-+.+.+.+-...+...|..++.-....-.|....|...++..|.+ .+-.++=..+.|+=-++-|-
T Consensus 152 ~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~ 231 (442)
T KOG2759|consen 152 SELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNP 231 (442)
T ss_pred hHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCH
Confidence 3555555555555444445566667777888877766777888889999999987733 45677778888888888764
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChh-----------------------------------
Q 015951 201 PLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLA----------------------------------- 244 (397)
Q Consensus 201 p~~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~----------------------------------- 244 (397)
+ .-+.+...+.|+.|.++++++. +.|-+-.+..+.|++-..|.
T Consensus 232 ~-~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~ 310 (442)
T KOG2759|consen 232 H-AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVD 310 (442)
T ss_pred H-HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHH
Confidence 4 5566778889999999998754 34555566666666555431
Q ss_pred ---------------------------------------------cHHHHHhc--CcHHHHHHhhcCCCccHHHHHHHHH
Q 015951 245 ---------------------------------------------GQEMFYVE--AGDLMLQDILGNSSFEIRLHRKAVS 277 (397)
Q Consensus 245 ---------------------------------------------~~~~f~~~--gGi~~L~~lL~s~~~d~klr~kA~~ 277 (397)
+...|.+. .-+..|+.+|.+++ |+.+-.-|++
T Consensus 311 di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~-Dp~iL~VAc~ 389 (442)
T KOG2759|consen 311 DIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSN-DPIILCVACH 389 (442)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCC-CCceeehhhh
Confidence 44444432 24566677777553 3445555666
Q ss_pred HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 278 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 278 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
=|+..+. ..|.-+..+.+-|.-+.++++++++|++|+-+|+.|+..|...
T Consensus 390 DIge~Vr-----~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~~ 439 (442)
T KOG2759|consen 390 DIGEYVR-----HYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALLAVQKLMVH 439 (442)
T ss_pred hHHHHHH-----hCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHHHHHHHHhh
Confidence 6666665 3677888889999999999999999999999999999998754
No 61
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=97.31 E-value=0.00068 Score=70.63 Aligned_cols=141 Identities=10% Similarity=0.071 Sum_probs=114.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC
Q 015951 187 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 266 (397)
Q Consensus 187 ~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~ 266 (397)
..++.+|-.++..-...+.-..++.....|+++|+.+...+.--++.++++.+-.+.+-+..|+..|-+..|+..+.++
T Consensus 407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK- 485 (743)
T COG5369 407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK- 485 (743)
T ss_pred HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc-
Confidence 3455666777776666777777888899999999986666667789999999999999999999999999999999976
Q ss_pred ccHHHHHHHHHHHHHHhhchhccCCCC-cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951 267 FEIRLHRKAVSLVGDLAKCQLENMHKV-EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 267 ~d~klr~kA~~lL~~L~~~~l~~~~~~-~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 334 (397)
|..+|.++.|.+++++.+ .+.. ..+.+.+ -.+..++++.+.++-.+|++++..|+++.+++.
T Consensus 486 -DdaLqans~wvlrHlmyn----cq~~ekf~~Lak-ig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~ 548 (743)
T COG5369 486 -DDALQANSEWVLRHLMYN----CQKNEKFKFLAK-IGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTS 548 (743)
T ss_pred -hhhhhhcchhhhhhhhhc----CcchhhhhhHHh-cCHHHHHHHhcCcccccHHHHHHHHHhcccccc
Confidence 457999999999999873 2222 2334444 447889999999999999999999999999754
No 62
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=97.22 E-value=0.00089 Score=45.17 Aligned_cols=39 Identities=26% Similarity=0.348 Sum_probs=35.3
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015951 201 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 239 (397)
Q Consensus 201 p~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~Li 239 (397)
+..+..+.+.|++|.|++++.+++..++..|++||++++
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 346778899999999999999888999999999999986
No 63
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=97.20 E-value=0.0012 Score=52.01 Aligned_cols=86 Identities=15% Similarity=0.227 Sum_probs=66.2
Q ss_pred HHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCC
Q 015951 213 LSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 291 (397)
Q Consensus 213 lp~Ll~LL-~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~ 291 (397)
||.|++.| ++++..+|..|+++|+.+ +.+ ..++.|..+++++ +..+|..|++.|..+-.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~--~~~---------~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~~------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL--GDP---------EAIPALIELLKDE--DPMVRRAAARALGRIGD------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC--THH---------HHHHHHHHHHTSS--SHHHHHHHHHHHHCCHH-------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc--CCH---------hHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC-------
Confidence 68999999 777789999999999943 111 3488999999775 67899999999997632
Q ss_pred CCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHH
Q 015951 292 KVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIK 327 (397)
Q Consensus 292 ~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~ 327 (397)
...++.|..++.++ +..+++.|..+|+
T Consensus 61 ---------~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 ---------PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp ---------HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 34788888888776 5566888887764
No 64
>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10. Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].
Probab=97.09 E-value=0.0022 Score=53.49 Aligned_cols=66 Identities=15% Similarity=0.258 Sum_probs=53.9
Q ss_pred HHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhc--CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC
Q 015951 146 QRALQELLILVE-PIDNANDLSKLGGLSVLVGQL--NHPDTDIRKISAWILGKASQNNPLVQKQVLELG 211 (397)
Q Consensus 146 ~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL--~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g 211 (397)
...+..+.++++ +..+.+.+...||+|.++++. ...+|-+|++|.++|.+++.+|++.|+.+.+..
T Consensus 4 ~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L~ 72 (102)
T PF09759_consen 4 RDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQLE 72 (102)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhcc
Confidence 344556666664 456777888999999999865 557899999999999999999999999988753
No 65
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=97.09 E-value=0.025 Score=57.75 Aligned_cols=186 Identities=17% Similarity=0.143 Sum_probs=134.2
Q ss_pred CCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH
Q 015951 138 STLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 217 (397)
Q Consensus 138 ~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll 217 (397)
......+|+.||.-+..+++-.+..+. ...|.+..++.+..+++..+|..|..+|+.++--|| +.+.+.||+..|+
T Consensus 78 ~~~~~~ER~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~ 153 (371)
T PF14664_consen 78 DNKNDVEREQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLL 153 (371)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHH
Confidence 334567899999999988875443443 467888899999999999999999999999999988 4577899999999
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC-----CccH--HHHHHHHHHHHHHhhchhccC
Q 015951 218 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS-----SFEI--RLHRKAVSLVGDLAKCQLENM 290 (397)
Q Consensus 218 ~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~-----~~d~--klr~kA~~lL~~L~~~~l~~~ 290 (397)
+.+-+++.++....+.++-.++ ++|..++.+...-.++.+..-+.+. +.+. ..-..+..++..+..+
T Consensus 154 ~~l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs----- 227 (371)
T PF14664_consen 154 RALIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS----- 227 (371)
T ss_pred HHHHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc-----
Confidence 9998866566777777777776 5566666555444566666655433 1122 2344566677777652
Q ss_pred CCCcchhHH-hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951 291 HKVEPPLFR-DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 291 ~~~~~~~l~-~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 333 (397)
=+...-.-. +...++.+++.|..+++++++..+..+..+....
T Consensus 228 W~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik 271 (371)
T PF14664_consen 228 WPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIK 271 (371)
T ss_pred CCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC
Confidence 222221111 1257889999999999999999999999988763
No 66
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=97.07 E-value=0.0093 Score=52.37 Aligned_cols=109 Identities=14% Similarity=0.059 Sum_probs=90.2
Q ss_pred CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh
Q 015951 141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 220 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL 220 (397)
+.|.|+..+-+|.++.-+.-|=.-+..+..++.++..|..++..+...+...|+++|- .+...+.+++.+++|.++..+
T Consensus 30 ~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d~~n~~~I~ea~g~plii~~l 108 (173)
T KOG4646|consen 30 NIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-DKTNAKFIREALGLPLIIFVL 108 (173)
T ss_pred cHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-ChHHHHHHHHhcCCceEEeec
Confidence 4578888889999988888888889999999999999999999999999999999996 588999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015951 221 KSSFVEEAVKALYTVSSLIRNNLAGQEMFY 250 (397)
Q Consensus 221 ~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~ 250 (397)
+|.+..+--.|+.++--+.-+...-...+.
T Consensus 109 ssp~e~tv~sa~~~l~~l~~~~Rt~r~ell 138 (173)
T KOG4646|consen 109 SSPPEITVHSAALFLQLLEFGERTERDELL 138 (173)
T ss_pred CCChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence 997776666666666666544433334433
No 67
>PTZ00429 beta-adaptin; Provisional
Probab=97.07 E-value=0.059 Score=59.64 Aligned_cols=205 Identities=12% Similarity=0.135 Sum_probs=116.9
Q ss_pred HhHHHHHHHHHhc-CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhcCCCCHH
Q 015951 107 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTD 184 (397)
Q Consensus 107 ~r~~~L~ea~~~~-~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL~s~~~~ 184 (397)
+|++-+|+++..+ .+.+-..+.-..++.+.+. +.+.|.-..--+..+.+ +.|.+- =.+..+.+-|++++|-
T Consensus 48 ~kk~alKkvIa~mt~G~DvS~LF~dVvk~~~S~--d~elKKLvYLYL~~ya~~~pelal-----LaINtl~KDl~d~Np~ 120 (746)
T PTZ00429 48 RKKAAVKRIIANMTMGRDVSYLFVDVVKLAPST--DLELKKLVYLYVLSTARLQPEKAL-----LAVNTFLQDTTNSSPV 120 (746)
T ss_pred HHHHHHHHHHHHHHCCCCchHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcccChHHHH-----HHHHHHHHHcCCCCHH
Confidence 3566666666555 3455555555566655443 45556555444444443 233221 1334455666777788
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC
Q 015951 185 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 264 (397)
Q Consensus 185 ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s 264 (397)
+|..|.++++.+- .|..-+. .++.+.+.+.+.++-||++|+.|+..+.+.+|. .+...|=++.|..+|.+
T Consensus 121 IRaLALRtLs~Ir--~~~i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D 190 (746)
T PTZ00429 121 VRALAVRTMMCIR--VSSVLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLND 190 (746)
T ss_pred HHHHHHHHHHcCC--cHHHHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcC
Confidence 8888887777764 3433332 345566677777777777888777777766653 22233445566676665
Q ss_pred CCccHHHHHHHHHHHHHHhhch---h--------------c---------------cCCCCcchhHHhCCcHHHHHHhcc
Q 015951 265 SSFEIRLHRKAVSLVGDLAKCQ---L--------------E---------------NMHKVEPPLFRDRFFLKSVVDLTA 312 (397)
Q Consensus 265 ~~~d~klr~kA~~lL~~L~~~~---l--------------~---------------~~~~~~~~~l~~~g~v~~Lv~lL~ 312 (397)
. +..+...|+.++..+..+. + . ...|..... ...++..+...|.
T Consensus 191 ~--dp~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e--~~~il~~l~~~Lq 266 (746)
T PTZ00429 191 N--NPVVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKES--AETLLTRVLPRMS 266 (746)
T ss_pred C--CccHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHH--HHHHHHHHHHHhc
Confidence 4 4456777777777665320 0 0 001111111 1245556666677
Q ss_pred CCChHHHHHHHHHHHHHhcC
Q 015951 313 SADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 313 ~~d~dv~E~aL~aL~~L~~~ 332 (397)
+.++-|.-.|+.++..+...
T Consensus 267 ~~N~AVVl~Aik~il~l~~~ 286 (746)
T PTZ00429 267 HQNPAVVMGAIKVVANLASR 286 (746)
T ss_pred CCCHHHHHHHHHHHHHhcCc
Confidence 77888888888888888754
No 68
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.067 Score=55.66 Aligned_cols=190 Identities=16% Similarity=0.132 Sum_probs=123.8
Q ss_pred CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCH-HHH--------
Q 015951 158 PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEA-------- 228 (397)
Q Consensus 158 ~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~-~v~-------- 228 (397)
-.+|.+++..+|-++.|+.+....+++++......+-+++-. ...+..++..|.+|.|..++.+++- .+.
T Consensus 334 f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD-~glr~KMv~~GllP~l~~ll~~d~~~~iA~~~lYh~S 412 (791)
T KOG1222|consen 334 FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD-SGLRPKMVNGGLLPHLASLLDSDTKHGIALNMLYHLS 412 (791)
T ss_pred hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc-ccccHHHhhccchHHHHHHhCCcccchhhhhhhhhhc
Confidence 357899999999999999999999999999999999999874 5588899999999999999998752 222
Q ss_pred ----HHHHHH--------------------------HH-HHhcCChhcHHHHHhcCcHHHHHH-----------------
Q 015951 229 ----VKALYT--------------------------VS-SLIRNNLAGQEMFYVEAGDLMLQD----------------- 260 (397)
Q Consensus 229 ----~kAl~A--------------------------LS-~LiR~~~~~~~~f~~~gGi~~L~~----------------- 260 (397)
.|+++| ++ |++-+ ..+.+.+++-.|+..|+.
T Consensus 413 ~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~ln-kRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRni 491 (791)
T KOG1222|consen 413 CDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLN-KRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNI 491 (791)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhc-cccceEEecCcchHHHHHHHhcccchHHHHHHHHh
Confidence 233322 11 11111 112222233334444332
Q ss_pred --------------------hhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHH
Q 015951 261 --------------------ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDL 318 (397)
Q Consensus 261 --------------------lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv 318 (397)
+++.++ +..+-..+...+.+|.. .+-+....+.+..++|.+-..|..+ ..++
T Consensus 492 SqHeg~tqn~FidyvgdLa~i~~nd~-~E~F~~EClGtlanL~v-----~dldw~~ilq~~~LvPw~k~~L~pga~eddL 565 (791)
T KOG1222|consen 492 SQHEGATQNMFIDYVGDLAGIAKNDN-SESFGLECLGTLANLKV-----TDLDWAKILQSENLVPWMKTQLQPGADEDDL 565 (791)
T ss_pred hhccchHHHHHHHHHHHHHHHhhcCc-hHHHHHHHHHHHhhccc-----CCCCHHHHHhhccccHHHHHhhcCCccchhh
Confidence 222211 12233333333333332 1223344567788999988888764 4578
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHH
Q 015951 319 QEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ 356 (397)
Q Consensus 319 ~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~ 356 (397)
+-...-++++++.+.. |...+...+-++.+++.|+..
T Consensus 566 vL~~vi~~GT~a~d~~-cA~Lla~a~~i~tlieLL~a~ 602 (791)
T KOG1222|consen 566 VLQIVIACGTMARDLD-CARLLAPAKLIDTLIELLQAC 602 (791)
T ss_pred hhHHHHHhhhhhhhhH-HHHHhCccccHHHHHHHHHhh
Confidence 8888888899998854 888787556668888877654
No 69
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.91 E-value=0.014 Score=60.28 Aligned_cols=153 Identities=15% Similarity=0.083 Sum_probs=109.4
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
..+.-++..|...+ +.+....+.-.+.. .+.+. ++..|+..|.++++++|..++..||.+- .+
T Consensus 54 ~a~~~L~~aL~~d~-~~ev~~~aa~al~~----~~~~~------~~~~L~~~L~d~~~~vr~aaa~ALg~i~--~~---- 116 (410)
T TIGR02270 54 AATELLVSALAEAD-EPGRVACAALALLA----QEDAL------DLRSVLAVLQAGPEGLCAGIQAALGWLG--GR---- 116 (410)
T ss_pred hHHHHHHHHHhhCC-ChhHHHHHHHHHhc----cCChH------HHHHHHHHhcCCCHHHHHHHHHHHhcCC--ch----
Confidence 45666777774432 33444444444431 22222 3889999999999999999999999753 23
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
++.+.|+.+|+++++.+|..++.+++.. . ..-.+.|..+|++. +..++..|+.++..+-.
T Consensus 117 -----~a~~~L~~~L~~~~p~vR~aal~al~~r--~----------~~~~~~L~~~L~d~--d~~Vra~A~raLG~l~~- 176 (410)
T TIGR02270 117 -----QAEPWLEPLLAASEPPGRAIGLAALGAH--R----------HDPGPALEAALTHE--DALVRAAALRALGELPR- 176 (410)
T ss_pred -----HHHHHHHHHhcCCChHHHHHHHHHHHhh--c----------cChHHHHHHHhcCC--CHHHHHHHHHHHHhhcc-
Confidence 5788899999998888998888777651 1 12234678888865 67799999999998853
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951 286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 330 (397)
Q Consensus 286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 330 (397)
...++.|...+.+.|+.|+..|+.++..+-
T Consensus 177 ---------------~~a~~~L~~al~d~~~~VR~aA~~al~~lG 206 (410)
T TIGR02270 177 ---------------RLSESTLRLYLRDSDPEVRFAALEAGLLAG 206 (410)
T ss_pred ---------------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC
Confidence 245566777789999999999998886663
No 70
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.033 Score=62.33 Aligned_cols=136 Identities=18% Similarity=0.197 Sum_probs=105.2
Q ss_pred HHHHHHHHHHhccC-CCCchhHHHh----cCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH
Q 015951 144 DSQRALQELLILVE-PIDNANDLSK----LGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 217 (397)
Q Consensus 144 ~k~~AL~~L~~Lve-~iDnA~~~~~----lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll 217 (397)
..+-+|..|.+++. +.|.|-.|.. +|.++.++.+| .+.++.++..|..+|..+..| ..|-..+...|.+..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan-~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATAN-KECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcc-cHHHHHHHhhhHHHHHH
Confidence 33457888888874 6788877755 58899999888 458899999999999988875 45888899999999999
Q ss_pred HhhcCCCHHHHH---HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015951 218 KMVKSSFVEEAV---KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 286 (397)
Q Consensus 218 ~LL~s~~~~v~~---kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~ 286 (397)
+||.|.+ +.|. ..+|||++ ++....+-.++||+..+..++-..+ ....|..|+.++..|...+
T Consensus 1820 ~lLHS~P-S~R~~vL~vLYAL~S----~~~i~keA~~hg~l~yil~~~c~~~-~~QqRAqaAeLlaKl~Adk 1885 (2235)
T KOG1789|consen 1820 TLLHSQP-SMRARVLDVLYALSS----NGQIGKEALEHGGLMYILSILCLTN-SDQQRAQAAELLAKLQADK 1885 (2235)
T ss_pred HHHhcCh-HHHHHHHHHHHHHhc----CcHHHHHHHhcCchhhhhHHHhccC-cHHHHHHHHHHHHHhhhcc
Confidence 9999854 3454 45566554 4566667778999998888776542 4557888999999998654
No 71
>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]
Probab=96.88 E-value=0.011 Score=51.95 Aligned_cols=127 Identities=10% Similarity=0.051 Sum_probs=96.9
Q ss_pred HHHHHH-hcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951 171 LSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 249 (397)
Q Consensus 171 l~~Li~-lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f 249 (397)
+..|+. +=+.++.+-+.....-|++.+. .|..-....+.+++..++..+...++.+.+-++.+|+|++-+ +.+..-+
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~~I 95 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAKFI 95 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHHHH
Confidence 444553 3456788888888888888885 699999999999999999999998988999999999999875 5666777
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHH
Q 015951 250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS 306 (397)
Q Consensus 250 ~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~ 306 (397)
.+++|++.++.++.|+ ...+-.-|+.++..|+. .+-..++.+....+++.
T Consensus 96 ~ea~g~plii~~lssp--~e~tv~sa~~~l~~l~~-----~~Rt~r~ell~p~Vv~~ 145 (173)
T KOG4646|consen 96 REALGLPLIIFVLSSP--PEITVHSAALFLQLLEF-----GERTERDELLSPAVVRT 145 (173)
T ss_pred HHhcCCceEEeecCCC--hHHHHHHHHHHHHHhcC-----cccchhHHhccHHHHHH
Confidence 8899999999999987 33355666777777764 34455555554444433
No 72
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.021 Score=56.85 Aligned_cols=154 Identities=11% Similarity=0.083 Sum_probs=118.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh--HHHHH--HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKASQNNP--LVQKQ--VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ 246 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp--~~Q~~--vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~ 246 (397)
.|.|-.-|.+++..++..||.-||.+..|.. .+.+. +++.|.+|.++..+-.++.+|...|+..|+.+.+ +|.+.
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaal 162 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAAL 162 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHH
Confidence 4555567889999999999999999998866 34333 4478999999999999999999999999999987 67888
Q ss_pred HHHHhcCcHHH--HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC-CChHHHHHHH
Q 015951 247 EMFYVEAGDLM--LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKAL 323 (397)
Q Consensus 247 ~~f~~~gGi~~--L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL 323 (397)
..++..+-... ++.+-... .+ -.|.++..++-.+.+ ..+.........|++..|..-|+. .|.-++-.++
T Consensus 163 eaiFeSellDdlhlrnlaakc-nd-iaRvRVleLIieifS-----iSpesaneckkSGLldlLeaElkGteDtLVianci 235 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKC-ND-IARVRVLELIIEIFS-----ISPESANECKKSGLLDLLEAELKGTEDTLVIANCI 235 (524)
T ss_pred HHhcccccCChHHHhHHHhhh-hh-HHHHHHHHHHHHHHh-----cCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHH
Confidence 88776654443 33332222 23 378888999888875 355566667778999888777766 6888888888
Q ss_pred HHHHHHhcC
Q 015951 324 AAIKNLLQL 332 (397)
Q Consensus 324 ~aL~~L~~~ 332 (397)
..+..|+..
T Consensus 236 ElvteLaet 244 (524)
T KOG4413|consen 236 ELVTELAET 244 (524)
T ss_pred HHHHHHHHH
Confidence 888888865
No 73
>PF05536 Neurochondrin: Neurochondrin
Probab=96.74 E-value=0.079 Score=56.70 Aligned_cols=156 Identities=15% Similarity=0.109 Sum_probs=120.8
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHH---HHHHHHcCcHHHHHHhhcCCC-------HHHHHHHHHHHHHHh
Q 015951 170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV---QKQVLELGALSKLMKMVKSSF-------VEEAVKALYTVSSLI 239 (397)
Q Consensus 170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~---Q~~vl~~g~lp~Ll~LL~s~~-------~~v~~kAl~ALS~Li 239 (397)
.+...+.+|++.+.+=|..+.-.+.+++.+++.. ++.+.+.=|.+-|-+||.+.. ...+.-|+.-|++.+
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 3566788899988899999999999999988743 345777777788889998732 345777888888888
Q ss_pred cCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHH
Q 015951 240 RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQ 319 (397)
Q Consensus 240 R~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~ 319 (397)
+. |.....---.+-+|.|+.++.+++ +..+...+..+|..++. +++-+..+.+.|.++.|++.+.+ .+...
T Consensus 86 ~~-~~~a~~~~~~~~IP~Lle~l~~~s-~~~~v~dalqcL~~Ias------~~~G~~aLl~~g~v~~L~ei~~~-~~~~~ 156 (543)
T PF05536_consen 86 RD-PELASSPQMVSRIPLLLEILSSSS-DLETVDDALQCLLAIAS------SPEGAKALLESGAVPALCEIIPN-QSFQM 156 (543)
T ss_pred CC-hhhhcCHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHc------CcHhHHHHHhcCCHHHHHHHHHh-CcchH
Confidence 73 332222222477999999998763 34688899999999984 66778889999999999999887 56789
Q ss_pred HHHHHHHHHHhcCCh
Q 015951 320 EKALAAIKNLLQLRT 334 (397)
Q Consensus 320 E~aL~aL~~L~~~~~ 334 (397)
|.|+.++.+++....
T Consensus 157 E~Al~lL~~Lls~~~ 171 (543)
T PF05536_consen 157 EIALNLLLNLLSRLG 171 (543)
T ss_pred HHHHHHHHHHHHhcc
Confidence 999999999887643
No 74
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.72 E-value=0.025 Score=50.88 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=97.6
Q ss_pred chhHHHhcCCHHHHHHhcCCCC------HHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC--HHHHHHHH
Q 015951 161 NANDLSKLGGLSVLVGQLNHPD------TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKAL 232 (397)
Q Consensus 161 nA~~~~~lGGl~~Li~lL~s~~------~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~--~~v~~kAl 232 (397)
.|..|++.||++.|+..+.++. .++-..+..+.-.+....--..+ .+....+.+++..++... ..+...|+
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd-~l~~~FI~Kia~~Vn~~~~d~~i~q~sL 81 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWD-TLSDSFIKKIASYVNSSAMDASILQRSL 81 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchh-hccHHHHHHHHHHHccccccchHHHHHH
Confidence 5889999999999999997654 47778888888887776543443 455567889999998654 56788899
Q ss_pred HHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 233 YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 233 ~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
.-|=+++-+++.....+-+.=-++-|+..|+.+ +..+|.+|..++..|..
T Consensus 82 aILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~--~~~iq~naiaLinAL~~ 131 (160)
T PF11841_consen 82 AILESIVLNSPKLYQLVEQEVTLESLIRHLQVS--NQEIQTNAIALINALFL 131 (160)
T ss_pred HHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcC--CHHHHHHHHHHHHHHHh
Confidence 999999998877777777777899999999985 56799999999999986
No 75
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=96.71 E-value=0.003 Score=54.03 Aligned_cols=72 Identities=22% Similarity=0.279 Sum_probs=63.9
Q ss_pred CHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015951 170 GLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 241 (397)
Q Consensus 170 Gl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~ 241 (397)
.+..|+.+| ++.++.+..-||.=||..++..|..+..+-+.|+=..++.|+.+++++||..|+.|+.-++.+
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~~ 116 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMVN 116 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 467788999 667899999999999999999999999999999999999999999999999999999988764
No 76
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=96.63 E-value=0.045 Score=49.48 Aligned_cols=112 Identities=15% Similarity=0.109 Sum_probs=79.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhcCcHHHHHHhhcCC-------CccHHHHHHHHHHHHHHh
Q 015951 212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNS-------SFEIRLHRKAVSLVGDLA 283 (397)
Q Consensus 212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~-------~~d~klr~kA~~lL~~L~ 283 (397)
....+++.+.+.+... +.+..|.-.+|..+. -.+.|++.||+..|..+|..- ..+......++.++..|+
T Consensus 67 ~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~ 144 (187)
T PF06371_consen 67 SPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM 144 (187)
T ss_dssp HHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH
Confidence 3455666666544322 778888888887654 478999999999999998521 134457888999999998
Q ss_pred hchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951 284 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 330 (397)
Q Consensus 284 ~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 330 (397)
.+ .......+...+++..++..|.++++.++..++..|..++
T Consensus 145 n~-----~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 145 NT-----KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SS-----HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cc-----HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 53 2234445566899999999999999999999998887764
No 77
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=96.62 E-value=0.033 Score=60.37 Aligned_cols=142 Identities=13% Similarity=0.137 Sum_probs=96.7
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHH---HHHHHHHHHHh---cCChhcHHH
Q 015951 175 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA---VKALYTVSSLI---RNNLAGQEM 248 (397)
Q Consensus 175 i~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~---~kAl~ALS~Li---R~~~~~~~~ 248 (397)
+..|++..+.+|.+|+..++.++.--..|++.-+=...--.|...|..+.+++- .+|++||.|.+ .-.||.
T Consensus 805 L~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi--- 881 (1172)
T KOG0213|consen 805 LWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI--- 881 (1172)
T ss_pred HHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh---
Confidence 456789999999999999999985433344332211122346677877777774 45666666544 123443
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC---cchhHHhCCcHHHHHHhccCCChHHHHHHHHH
Q 015951 249 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV---EPPLFRDRFFLKSVVDLTASADLDLQEKALAA 325 (397)
Q Consensus 249 f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~---~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~a 325 (397)
.+-++.|..+|++. ..|++.+..-++..++.. .++ .+++. -+|=-|+++|++-+..++..|..+
T Consensus 882 ---~dllPrltPILknr--heKVqen~IdLvg~Iadr-----gpE~v~aREWM---RIcfeLlelLkahkK~iRRaa~nT 948 (1172)
T KOG0213|consen 882 ---KDLLPRLTPILKNR--HEKVQENCIDLVGTIADR-----GPEYVSAREWM---RICFELLELLKAHKKEIRRAAVNT 948 (1172)
T ss_pred ---hhhcccchHhhhhh--HHHHHHHHHHHHHHHHhc-----CcccCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 24578899999987 679999999999999973 233 33443 355567788888778888888887
Q ss_pred HHHHhcC
Q 015951 326 IKNLLQL 332 (397)
Q Consensus 326 L~~L~~~ 332 (397)
++.++..
T Consensus 949 fG~Iaka 955 (1172)
T KOG0213|consen 949 FGYIAKA 955 (1172)
T ss_pred hhHHHHh
Confidence 7777643
No 78
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=96.60 E-value=0.045 Score=60.13 Aligned_cols=164 Identities=16% Similarity=0.206 Sum_probs=118.9
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc
Q 015951 142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 221 (397)
Q Consensus 142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~ 221 (397)
...|..|+..+-- ++-+.+++-. .++-+++...+.+.++|..----+-..++.+| +..++ +++.+.+=+.
T Consensus 33 ~~~kidAmK~iIa---~M~~G~dmss--Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P--~~~lL---avNti~kDl~ 102 (757)
T COG5096 33 DYKKIDAMKKIIA---QMSLGEDMSS--LFPDVIKNVATRDVELKRLLYLYLERYAKLKP--ELALL---AVNTIQKDLQ 102 (757)
T ss_pred hHHHHHHHHHHHH---HHhcCCChHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCH--HHHHH---HHHHHHhhcc
Confidence 4556666554432 2222233222 46777777778889999999999999999999 44443 5778888888
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015951 222 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR 301 (397)
Q Consensus 222 s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~ 301 (397)
++++.+|..|+..+|.+ |.. ++. -.-+.++.+++.++ +..+|+.|+.++..+-+ -....+.+.
T Consensus 103 d~N~~iR~~AlR~ls~l-~~~-----el~-~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~--------ld~~l~~~~ 165 (757)
T COG5096 103 DPNEEIRGFALRTLSLL-RVK-----ELL-GNIIDPIKKLLTDP--HAYVRKTAALAVAKLYR--------LDKDLYHEL 165 (757)
T ss_pred CCCHHHHHHHHHHHHhc-ChH-----HHH-HHHHHHHHHHccCC--cHHHHHHHHHHHHHHHh--------cCHhhhhcc
Confidence 88999999999999976 432 221 23567889999887 45799999999999874 123345677
Q ss_pred CcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 302 FFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 302 g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
|.+..+..++...|+.|...|+.+|..+-..
T Consensus 166 g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 166 GLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 8999999999999999999999888877653
No 79
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.60 E-value=0.02 Score=63.88 Aligned_cols=126 Identities=15% Similarity=0.079 Sum_probs=110.3
Q ss_pred CCCchhHHHhcCCHHHHHHhcCC-C--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHH
Q 015951 158 PIDNANDLSKLGGLSVLVGQLNH-P--DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALY 233 (397)
Q Consensus 158 ~iDnA~~~~~lGGl~~Li~lL~s-~--~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ 233 (397)
+..+--+++|-+|....++.|.. + +++-|..||.+|+.++.|.+.-|+..++.+.|..-+..+.++. +-+|-=.+-
T Consensus 543 D~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~i 622 (1387)
T KOG1517|consen 543 DPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCI 622 (1387)
T ss_pred CchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHH
Confidence 34455689999999999999865 2 4699999999999999999999999999999999999999864 446777888
Q ss_pred HHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 234 TVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 234 ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
+|+-|=.+|+.++-.-...++.+.|..+|.++ -+.+|..|+|+|..+..+
T Consensus 623 cLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~--vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 623 CLGRLWEDYDEARWSGRRDNAHEKLILLLSDP--VPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred HHHHHhhhcchhhhccccccHHHHHHHHhcCc--cHHHHHHHHHHHHHHhcc
Confidence 99999999999888888899999999999986 567899999999999874
No 80
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=96.50 E-value=0.21 Score=49.71 Aligned_cols=196 Identities=17% Similarity=0.109 Sum_probs=115.2
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHh--cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC---ChH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQLNHPDTDIRKISAWILGKASQN---NPL 202 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~--lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqN---Np~ 202 (397)
++++|+.+.+.. ...|+.+|..+..++...-....+.+ .-.++.+...++.+..+=+..|+.+++-++=. .+.
T Consensus 45 L~~~Id~l~eK~--~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~ 122 (309)
T PF05004_consen 45 LKEAIDLLTEKS--SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGED 122 (309)
T ss_pred HHHHHHHHHhcC--HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCcc
Confidence 555666665553 57889999999887743322322222 23467777888887777788999999988643 233
Q ss_pred HHHHHHHcCcHHHHHHhhcCCCH--HHHHHHHHHHHHHhcCChhcHHHHHh-cCcHH--HHHHhhcCCC--------ccH
Q 015951 203 VQKQVLELGALSKLMKMVKSSFV--EEAVKALYTVSSLIRNNLAGQEMFYV-EAGDL--MLQDILGNSS--------FEI 269 (397)
Q Consensus 203 ~Q~~vl~~g~lp~Ll~LL~s~~~--~v~~kAl~ALS~LiR~~~~~~~~f~~-~gGi~--~L~~lL~s~~--------~d~ 269 (397)
. ..+++ ...|.|.+++.+++. .+|..++.||+-++.-.......... ..-+. ....+.+++. ++.
T Consensus 123 ~-~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~ 200 (309)
T PF05004_consen 123 S-EEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDA 200 (309)
T ss_pred H-HHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCcc
Confidence 3 34444 478999999987653 45677777777553311111111110 01111 1111122111 123
Q ss_pred HHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 270 RLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 270 klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
.+...|+..-+-|++. .++....... ...++.++.+|.++|.+||-.|-.+|.-|...
T Consensus 201 ~l~~aAL~aW~lLlt~----~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~ 258 (309)
T PF05004_consen 201 ALVAAALSAWALLLTT----LPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALLYEL 258 (309)
T ss_pred HHHHHHHHHHHHHHhc----CCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence 4666666666655542 2221112222 34588999999999999999999988877654
No 81
>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]
Probab=96.47 E-value=0.051 Score=56.33 Aligned_cols=155 Identities=13% Similarity=0.124 Sum_probs=117.2
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQ 206 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~-s~~~~ir~~Aa~vLg~~aqNNp~~Q~~ 206 (397)
.-.++..+..+......++.+-..|+++.- -.|...+...| +..++.+-+ ...+++....+.+|+++.++..+.-+.
T Consensus 182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~-aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKHSeet~~~ 259 (832)
T KOG3678|consen 182 LDLLLRMFQAPNLETSVRVEAARLLEQILV-AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMFKHSEETCQR 259 (832)
T ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHHHHh-hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 345677777776555668888877777553 34555566665 666666553 467899999999999999988777778
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 207 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 207 vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~-~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
+++.|++..++-.....++.+-..+..||+|+.-| ....+..+++-..-+-|..+-.+. |.-+|..|+-++.-|+++
T Consensus 260 Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk--Del~R~~AClAV~vlat~ 337 (832)
T KOG3678|consen 260 LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK--DELLRLHACLAVAVLATN 337 (832)
T ss_pred HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch--HHHHHHHHHHHHhhhhhh
Confidence 88999999999988888888888888899987655 456677777777777776665554 455899999999999875
Q ss_pred h
Q 015951 286 Q 286 (397)
Q Consensus 286 ~ 286 (397)
+
T Consensus 338 K 338 (832)
T KOG3678|consen 338 K 338 (832)
T ss_pred h
Confidence 3
No 82
>COG5369 Uncharacterized conserved protein [Function unknown]
Probab=96.38 E-value=0.022 Score=59.80 Aligned_cols=167 Identities=11% Similarity=0.133 Sum_probs=123.6
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-HH
Q 015951 169 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-QE 247 (397)
Q Consensus 169 GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~-~~ 247 (397)
.-.++|++.|..|+..|...+...+.+.+---...|..|++.|.|..|++++.+.++.++++..|.+.-+..+.... +-
T Consensus 431 ~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sKDdaLqans~wvlrHlmyncq~~ekf 510 (743)
T COG5369 431 PIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSKDDALQANSEWVLRHLMYNCQKNEKF 510 (743)
T ss_pred chHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcchhhhhhcchhhhhhhhhcCcchhhh
Confidence 45678889998888888888888888888766779999999999999999999988899999999999999887554 45
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCC----cHHHHHHhccCC-ChHHHHHH
Q 015951 248 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF----FLKSVVDLTASA-DLDLQEKA 322 (397)
Q Consensus 248 ~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g----~v~~Lv~lL~~~-d~dv~E~a 322 (397)
.|+...|...++.+..++ ..++|.....++.|+.-.. .-++..++.+.+.. +.+.+++-+... ..++++..
T Consensus 511 ~~Lakig~~kvl~~~NDp--c~~vq~q~lQilrNftc~~--~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~ 586 (743)
T COG5369 511 KFLAKIGVEKVLSYTNDP--CFKVQHQVLQILRNFTCDT--SKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGC 586 (743)
T ss_pred hhHHhcCHHHHHHHhcCc--ccccHHHHHHHHHhccccc--ccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhH
Confidence 788899999999999987 6789999999999986410 01233444443322 334455555554 44666665
Q ss_pred HHHHHHHhcCChHHHHHH
Q 015951 323 LAAIKNLLQLRTTEALVL 340 (397)
Q Consensus 323 L~aL~~L~~~~~~~r~~~ 340 (397)
-..+...+++.+ .+..+
T Consensus 587 yilv~~aa~d~~-l~~~V 603 (743)
T COG5369 587 YILVRNAACDDT-LDYIV 603 (743)
T ss_pred HHHHHHHhccch-HHHHH
Confidence 555555555543 44443
No 83
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=96.31 E-value=0.48 Score=49.07 Aligned_cols=89 Identities=20% Similarity=0.043 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
+....++..|.+. ++..+..++..+.. ....-.++++.+|+++++.+|..|+.+||.+-.-
T Consensus 117 ~a~~~L~~~L~~~--~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~~~------ 177 (410)
T TIGR02270 117 QAEPWLEPLLAAS--EPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRALGELPRR------ 177 (410)
T ss_pred HHHHHHHHHhcCC--ChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHHHHhhccc------
Confidence 3444455555433 34445555544443 1122467888999999999999999999988642
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015951 206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~L 238 (397)
.++|.|...+.+.++.||..|+++++-+
T Consensus 178 -----~a~~~L~~al~d~~~~VR~aA~~al~~l 205 (410)
T TIGR02270 178 -----LSESTLRLYLRDSDPEVRFAALEAGLLA 205 (410)
T ss_pred -----cchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence 5788899999999999999999999765
No 84
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.30 E-value=0.007 Score=43.97 Aligned_cols=54 Identities=15% Similarity=0.106 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015951 226 EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 282 (397)
Q Consensus 226 ~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L 282 (397)
.+|..|+++|+++..+.+..... +....++.|..+|.++ +..+|..|+++|++|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDD--DDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence 58999999999988877766555 4478899999999876 347999999999865
No 85
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=96.25 E-value=0.35 Score=49.40 Aligned_cols=178 Identities=16% Similarity=0.074 Sum_probs=132.1
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHh
Q 015951 142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 219 (397)
Q Consensus 142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s--~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~L 219 (397)
.+.+..++..+.+++.+.+.-..+.+++.--.++..|.. .+..=|.+|...+..+..-....+ .+-.|.+..++.+
T Consensus 39 ~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~--~~~~~vvralvai 116 (371)
T PF14664_consen 39 KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK--EIPRGVVRALVAI 116 (371)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc--cCCHHHHHHHHHH
Confidence 578888999999999999999999999866666677743 455668999999998876421111 1345788999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015951 220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 299 (397)
Q Consensus 220 L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~ 299 (397)
..+.++..+.-++-.|+-++-.+|. .+..+||+..|.+.+.++. ..+..-.+..+-++.. +|..+..+.
T Consensus 117 ae~~~D~lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d~~--~~~~~~l~~~lL~lLd------~p~tR~yl~ 185 (371)
T PF14664_consen 117 AEHEDDRLRRICLETLCELALLNPE---LVAECGGIRVLLRALIDGS--FSISESLLDTLLYLLD------SPRTRKYLR 185 (371)
T ss_pred HhCCchHHHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHhcc--HhHHHHHHHHHHHHhC------Ccchhhhhc
Confidence 9998889999999999999888874 7788999999999998752 3366677777778874 577777776
Q ss_pred hCCcHHHHHHhccCC-------Ch--HHHHHHHHHHHHHhcC
Q 015951 300 DRFFLKSVVDLTASA-------DL--DLQEKALAAIKNLLQL 332 (397)
Q Consensus 300 ~~g~v~~Lv~lL~~~-------d~--dv~E~aL~aL~~L~~~ 332 (397)
..--++.+....... +. +....+..++..+...
T Consensus 186 ~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs 227 (371)
T PF14664_consen 186 PGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS 227 (371)
T ss_pred CCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc
Confidence 655556655544322 22 3556666666666643
No 86
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.15 E-value=0.28 Score=53.58 Aligned_cols=179 Identities=15% Similarity=0.104 Sum_probs=116.9
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH-HHHhcCc
Q 015951 176 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE-MFYVEAG 254 (397)
Q Consensus 176 ~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~-~f~~~gG 254 (397)
+-+++++=.-|..|+-+.|.+-..-...+..-+..+++|.++.++.+++--++..+.|+++.++.+.|.... ...-.+-
T Consensus 371 e~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~ 450 (859)
T KOG1241|consen 371 ENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSK 450 (859)
T ss_pred HhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHH
Confidence 356678888899999999999877666777777789999999999976667788999999999988765432 2233456
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC---CcHHHHHHhccC---CChHHHHHHHHHHHH
Q 015951 255 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR---FFLKSVVDLTAS---ADLDLQEKALAAIKN 328 (397)
Q Consensus 255 i~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~---g~v~~Lv~lL~~---~d~dv~E~aL~aL~~ 328 (397)
++.|+.-|.+ .+++-.+++|++.+|+..-.+.....-.....+. -++..|+..-.. .+..+|-.|-.||..
T Consensus 451 l~~l~~gL~D---ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmE 527 (859)
T KOG1241|consen 451 LSALLEGLND---EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALME 527 (859)
T ss_pred HHHHHHHhhh---CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHH
Confidence 6677777765 5689999999999998632111111100001111 233334333322 256899999999999
Q ss_pred HhcCChHHHHHHHhcCChHHHHHHHHHHhH
Q 015951 329 LLQLRTTEALVLKDFCGLDTALERLRQQLQ 358 (397)
Q Consensus 329 L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~ 358 (397)
+...++..---+. .+-..-.+.+|.+-+.
T Consensus 528 lIk~st~~vy~~v-~~~~l~il~kl~q~i~ 556 (859)
T KOG1241|consen 528 LIKNSTDDVYPMV-QKLTLVILEKLDQTIS 556 (859)
T ss_pred HHHcCcHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9988765222121 1112344555555544
No 87
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=96.13 E-value=0.36 Score=54.53 Aligned_cols=93 Identities=20% Similarity=0.191 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc
Q 015951 142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 221 (397)
Q Consensus 142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~ 221 (397)
+.-..-||+.+..+..+-++-+++...|.+..|+.+|.| -|..|..+..+|-.++. |++.-...+++|++..++.++.
T Consensus 1786 ~~iq~LaL~Vi~~~Tan~~Cv~~~a~~~vL~~LL~lLHS-~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c 1863 (2235)
T KOG1789|consen 1786 PKLQILALQVILLATANKECVTDLATCNVLTTLLTLLHS-QPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILC 1863 (2235)
T ss_pred chHHHHHHHHHHHHhcccHHHHHHHhhhHHHHHHHHHhc-ChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHh
Confidence 345567899999988999999999999988888888755 68999999999999986 6888888899999999998887
Q ss_pred CCC-HHHHHHHHHHHH
Q 015951 222 SSF-VEEAVKALYTVS 236 (397)
Q Consensus 222 s~~-~~v~~kAl~ALS 236 (397)
.++ ...|..|..-++
T Consensus 1864 ~~~~~QqRAqaAeLla 1879 (2235)
T KOG1789|consen 1864 LTNSDQQRAQAAELLA 1879 (2235)
T ss_pred ccCcHHHHHHHHHHHH
Confidence 654 455555444443
No 88
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=96.13 E-value=0.02 Score=60.95 Aligned_cols=146 Identities=18% Similarity=0.178 Sum_probs=94.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH--HHHHcCcHHHHHHhhcCCCHHHHH---HHHHHHHHHhcCChhcH
Q 015951 172 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK--QVLELGALSKLMKMVKSSFVEEAV---KALYTVSSLIRNNLAGQ 246 (397)
Q Consensus 172 ~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~--~vl~~g~lp~Ll~LL~s~~~~v~~---kAl~ALS~LiR~~~~~~ 246 (397)
..++.+|++..|.+|.+|+...|.++.-=..|-+ .+.+.| -.|...|..+.+++-- +|+++|-+..+-. .-|
T Consensus 607 StiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~-~mq 683 (975)
T COG5181 607 STILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSVHRFR-SMQ 683 (975)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhhhccc-ccC
Confidence 3445678999999999999999998742111111 111112 2344566666677644 5555555544322 111
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC---cchhHHhCCcHHHHHHhccCCChHHHHHHH
Q 015951 247 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV---EPPLFRDRFFLKSVVDLTASADLDLQEKAL 323 (397)
Q Consensus 247 ~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~---~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL 323 (397)
.. -.|-++.|..+|++. ..|+..+...++.-++.. .|+ .+++. .+|=-|+++|++-+..++..|.
T Consensus 684 pP--i~~ilP~ltPILrnk--h~Kv~~nti~lvg~I~~~-----~peyi~~rEWM---RIcfeLvd~Lks~nKeiRR~A~ 751 (975)
T COG5181 684 PP--ISGILPSLTPILRNK--HQKVVANTIALVGTICMN-----SPEYIGVREWM---RICFELVDSLKSWNKEIRRNAT 751 (975)
T ss_pred Cc--hhhccccccHhhhhh--hHHHhhhHHHHHHHHHhc-----CcccCCHHHHH---HHHHHHHHHHHHhhHHHHHhhh
Confidence 11 136688899999987 678999999999999873 232 23443 3555678888888888888888
Q ss_pred HHHHHHhcC
Q 015951 324 AAIKNLLQL 332 (397)
Q Consensus 324 ~aL~~L~~~ 332 (397)
.+++.++..
T Consensus 752 ~tfG~Is~a 760 (975)
T COG5181 752 ETFGCISRA 760 (975)
T ss_pred hhhhhHHhh
Confidence 777766643
No 89
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=96.12 E-value=0.099 Score=47.06 Aligned_cols=126 Identities=13% Similarity=0.184 Sum_probs=94.7
Q ss_pred HHHHHHcCcHHHHHHhhcCCCH------HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHH
Q 015951 204 QKQVLELGALSKLMKMVKSSFV------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVS 277 (397)
Q Consensus 204 Q~~vl~~g~lp~Ll~LL~s~~~------~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~ 277 (397)
-..|+..||++.|++++.++.. +.-..++.|+..+.-|.--.. ..+...=+..++.....+..+..+...|..
T Consensus 4 A~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLa 82 (160)
T PF11841_consen 4 AQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSAMDASILQRSLA 82 (160)
T ss_pred HHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHccccccchHHHHHHH
Confidence 3568899999999999998763 455677888888776543222 233333445566666655446778999999
Q ss_pred HHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChH
Q 015951 278 LVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 335 (397)
Q Consensus 278 lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~ 335 (397)
.|-+++. .++.....+.++--++.|+.+|...+.++|-+|+..+-+|....+.
T Consensus 83 ILEs~Vl-----~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~ 135 (160)
T PF11841_consen 83 ILESIVL-----NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADD 135 (160)
T ss_pred HHHHHHh-----CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCCh
Confidence 9999986 3556677777888899999999999999999999988887766544
No 90
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=96.12 E-value=0.41 Score=47.38 Aligned_cols=156 Identities=17% Similarity=0.170 Sum_probs=96.6
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951 127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 206 (397)
Q Consensus 127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~ 206 (397)
.....++.+.+. +...|..|...+.. ++ ..-.++.+..+|.+.++.+|..|+.+||.+ ++|
T Consensus 44 ~~~~~~~~l~~~--~~~vr~~aa~~l~~----~~------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~--~~~----- 104 (335)
T COG1413 44 AADELLKLLEDE--DLLVRLSAAVALGE----LG------SEEAVPLLRELLSDEDPRVRDAAADALGEL--GDP----- 104 (335)
T ss_pred hHHHHHHHHcCC--CHHHHHHHHHHHhh----hc------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc--CCh-----
Confidence 344555666655 44556666555321 11 122678888999999999999999988877 344
Q ss_pred HHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC----------ccHHHHHHH
Q 015951 207 VLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS----------FEIRLHRKA 275 (397)
Q Consensus 207 vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~----------~d~klr~kA 275 (397)
..+|.|+.++.. .+..+|..|.++|+.+- .+ .++..|...+.+.. ....+|..+
T Consensus 105 ----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~--~~---------~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a 169 (335)
T COG1413 105 ----EAVPPLVELLENDENEGVRAAAARALGKLG--DE---------RALDPLLEALQDEDSGSAAAALDAALLDVRAAA 169 (335)
T ss_pred ----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcC--ch---------hhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence 478999999994 66789999999999762 22 22556666666542 111244455
Q ss_pred HHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 276 VSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 276 ~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
+..+..+-. ...++.+...+...+.+++..|..+|..+...
T Consensus 170 ~~~l~~~~~----------------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 170 AEALGELGD----------------PEAIPLLIELLEDEDADVRRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHcCC----------------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcc
Confidence 555554421 23344455555555556666666666655554
No 91
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.09 E-value=0.13 Score=53.68 Aligned_cols=193 Identities=18% Similarity=0.127 Sum_probs=139.9
Q ss_pred HhHHHHHHHHHhcC----CCCHHHHHHHHHHHhhCCCCC----HHHH-HHHHHHHHhccCCCCchhHHHhcCCHHHHHHh
Q 015951 107 KRQMEIKELMEKLK----TPSDAQLIQIAIDDLNNSTLS----LEDS-QRALQELLILVEPIDNANDLSKLGGLSVLVGQ 177 (397)
Q Consensus 107 ~r~~~L~ea~~~~~----~~~d~~lmk~~i~~L~~~~~s----~e~k-~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~l 177 (397)
+|+++-.+.|+.-+ .+...+.+|+-++.+...-.+ .+.. ..|+--|.++.+++..--.+..-+-+..|+..
T Consensus 233 kRye~w~~El~k~krs~de~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAed~~~ElKMrrkniV~mLVKa 312 (791)
T KOG1222|consen 233 KRYEFWIAELKKTKRSTDEKPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAEDISVELKMRRKNIVAMLVKA 312 (791)
T ss_pred HHHHHHHHHHhhhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHHHHHH
Confidence 68888777776542 122355566655554332211 1222 24677788888998877778877888899999
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015951 178 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 257 (397)
Q Consensus 178 L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 257 (397)
|..++.++-......|-.++- -.+.+..+.+.|.+.+|++++....+.++...+.-+=|+.-+. ..+...+..|-+|.
T Consensus 313 Ldr~n~~Ll~lv~~FLkKLSI-f~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~-glr~KMv~~GllP~ 390 (791)
T KOG1222|consen 313 LDRSNSSLLTLVIKFLKKLSI-FDENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS-GLRPKMVNGGLLPH 390 (791)
T ss_pred HcccchHHHHHHHHHHHHhhh-hccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc-cccHHHhhccchHH
Confidence 998888988888888887764 3446777888999999999999999888877777777775543 44667788888999
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc
Q 015951 258 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT 311 (397)
Q Consensus 258 L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL 311 (397)
|..++.+++. ..-|+..++.++- ++..+..|.....++.+...+
T Consensus 391 l~~ll~~d~~----~~iA~~~lYh~S~------dD~~K~MfayTdci~~lmk~v 434 (791)
T KOG1222|consen 391 LASLLDSDTK----HGIALNMLYHLSC------DDDAKAMFAYTDCIKLLMKDV 434 (791)
T ss_pred HHHHhCCccc----chhhhhhhhhhcc------CcHHHHHHHHHHHHHHHHHHH
Confidence 9999997632 3347777777763 677788888888888887754
No 92
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=96.03 E-value=0.17 Score=49.04 Aligned_cols=196 Identities=14% Similarity=0.096 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHHhccCCCC-chhHH-HhcCCHHHHHHh-------cCCCC--H---HHHHHHHHHHHHHhcCChHHHHH
Q 015951 141 SLEDSQRALQELLILVEPID-NANDL-SKLGGLSVLVGQ-------LNHPD--T---DIRKISAWILGKASQNNPLVQKQ 206 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iD-nA~~~-~~lGGl~~Li~l-------L~s~~--~---~ir~~Aa~vLg~~aqNNp~~Q~~ 206 (397)
+++.|+.||.+|..--+..+ .|--+ +..|-+..|++- |..++ + .--+.|..++..+|+ +|+.+..
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAs-hpetr~~ 86 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVAS-HPETRMP 86 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHc-ChHHHHH
Confidence 45889999999998777754 34333 334666666542 23222 2 333456666667776 7999999
Q ss_pred HHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015951 207 VLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 280 (397)
Q Consensus 207 vl~~g~lp~Ll~LL~s~~-----~~v~~kAl~ALS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~ 280 (397)
|++.+..-.|.-.|+..+ +-+|-.+++-|+++++.+ +....-+.+..-++...+.+..+ +.-.|.-|+|.+.
T Consensus 87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G--selSKtvAtfIlq 164 (262)
T PF04078_consen 87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG--SELSKTVATFILQ 164 (262)
T ss_dssp HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS---HHHHHHHHHHHH
T ss_pred HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc--cHHHHHHHHHHHH
Confidence 999987666666666543 246889999999999975 44455556678899999999876 4457889999999
Q ss_pred HHhhch--hccCCCCcchhHHh-CCcHHHHH-HhccCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951 281 DLAKCQ--LENMHKVEPPLFRD-RFFLKSVV-DLTASADLDLQEKALAAIKNLLQLRTTEALVLK 341 (397)
Q Consensus 281 ~L~~~~--l~~~~~~~~~~l~~-~g~v~~Lv-~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~ 341 (397)
.+.... +. .--...+.|.. ..++..++ .+.+.+++.+..++.+|-..|+.++. .|..++
T Consensus 165 KIL~dd~GL~-yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr-ar~aL~ 227 (262)
T PF04078_consen 165 KILLDDVGLN-YICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR-AREALR 227 (262)
T ss_dssp HHHHSHHHHH-HHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT-HHHHHH
T ss_pred HHHcchhHHH-HHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH-HHHHHH
Confidence 988632 00 00112222211 12233333 34566789999999999999998864 555554
No 93
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.95 E-value=0.54 Score=52.59 Aligned_cols=153 Identities=14% Similarity=0.076 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC
Q 015951 185 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 264 (397)
Q Consensus 185 ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s 264 (397)
++.-++.+++-..++--..--. ++.+.+..++--+.+.-..+|+||+++||.+.-..+. ..| .+-+..|.+-|..
T Consensus 149 i~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~--~ly--~~li~~Ll~~L~~ 223 (1233)
T KOG1824|consen 149 IKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR--DLY--VELIEHLLKGLSN 223 (1233)
T ss_pred hHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHhccCC
Confidence 5666666666555542211111 2223444455455555567899999999998764332 222 2445566666664
Q ss_pred CCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc---cCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951 265 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT---ASADLDLQEKALAAIKNLLQLRTTEALVLK 341 (397)
Q Consensus 265 ~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL---~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~ 341 (397)
+ +....-+--..+|+.++.+. ....... -..+++.+.+.. ..+|.+++|.++.++..+... |++.+.
T Consensus 224 ~-~q~~~~rt~Iq~l~~i~r~a----g~r~~~h--~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~r---cp~ei~ 293 (1233)
T KOG1824|consen 224 R-TQMSATRTYIQCLAAICRQA----GHRFGSH--LDKIVPLVADYCNKIEEDDDELREYCLQALESFLRR---CPKEIL 293 (1233)
T ss_pred C-CchHHHHHHHHHHHHHHHHh----cchhhcc--cchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHh---Chhhhc
Confidence 4 22223344566777777642 2222211 135677777776 667889999999999999964 556553
Q ss_pred hcCChHHHHHHHH
Q 015951 342 DFCGLDTALERLR 354 (397)
Q Consensus 342 ~~~gL~~~L~~Lr 354 (397)
.-.+..+..+-
T Consensus 294 --p~~pei~~l~l 304 (1233)
T KOG1824|consen 294 --PHVPEIINLCL 304 (1233)
T ss_pred --ccchHHHHHHH
Confidence 22344444443
No 94
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=95.93 E-value=0.012 Score=38.07 Aligned_cols=29 Identities=31% Similarity=0.573 Sum_probs=25.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKASQN 199 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqN 199 (397)
+|.+++++++++++||..|+++||.+++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 68889999999999999999999999874
No 95
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.90 E-value=0.13 Score=47.97 Aligned_cols=132 Identities=14% Similarity=0.029 Sum_probs=84.7
Q ss_pred HHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCH
Q 015951 146 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV 225 (397)
Q Consensus 146 ~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~ 225 (397)
..|+..+..++....+.-+-.--..+|+|+..+.++..-|+..|..+|.+++++.+..... .++.+.....+.++
T Consensus 71 ~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~ 145 (228)
T PF12348_consen 71 KTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNP 145 (228)
T ss_dssp HHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-H
T ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCH
Confidence 4567777777765544422222246788999999999999999999999999987622221 15666777888889
Q ss_pred HHHHHHHHHHHHHhcCChhcHHHHHh----cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 226 EEAVKALYTVSSLIRNNLAGQEMFYV----EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 226 ~v~~kAl~ALS~LiR~~~~~~~~f~~----~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
.+|..++..+..++..++.....+-. ..-.+.+..++.++ +..+|..|-.++..+..
T Consensus 146 ~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~--~~~VR~~Ar~~~~~l~~ 206 (228)
T PF12348_consen 146 QVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA--DPEVREAARECLWALYS 206 (228)
T ss_dssp HHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHH
Confidence 99999999999998887722222222 23456777777776 56788888888888765
No 96
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.82 E-value=0.14 Score=55.16 Aligned_cols=151 Identities=13% Similarity=0.051 Sum_probs=108.3
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHh------c-CCHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 015951 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK------L-GGLSVLVGQLNHPDTDIRKISAWILGKA 196 (397)
Q Consensus 124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~------l-GGl~~Li~lL~s~~~~ir~~Aa~vLg~~ 196 (397)
=++++.++.+.|.+++.. ..+.|+..|..++|+. |.-+.. + =-+|.++++.+|++|.||..|..|+-..
T Consensus 126 wpelLp~L~~~L~s~d~n--~~EgA~~AL~KIcEDs--a~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~ 201 (885)
T KOG2023|consen 126 WPELLPQLCELLDSPDYN--TCEGAFGALQKICEDS--AQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQF 201 (885)
T ss_pred chhHHHHHHHHhcCCccc--ccchhHHHHHHHHhhh--HHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence 356778888888877533 3567777887777754 222222 1 2478888999999999999999999888
Q ss_pred hcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh--cCcHHHHHHhhcCCCccHHHHHH
Q 015951 197 SQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILGNSSFEIRLHRK 274 (397)
Q Consensus 197 aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~--~gGi~~L~~lL~s~~~d~klr~k 274 (397)
.-.++..-..-++ ..+..|..+..+.+++||+..+.|+.-++.-.|. .+.- .|-++.+.+..++. +..+...
T Consensus 202 i~~~~qal~~~iD-~Fle~lFalanD~~~eVRk~vC~alv~Llevr~d---kl~phl~~IveyML~~tqd~--dE~VALE 275 (885)
T KOG2023|consen 202 IIIQTQALYVHID-KFLEILFALANDEDPEVRKNVCRALVFLLEVRPD---KLVPHLDNIVEYMLQRTQDV--DENVALE 275 (885)
T ss_pred eecCcHHHHHHHH-HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHH---hcccchHHHHHHHHHHccCc--chhHHHH
Confidence 7665533222222 3678888888888899999999999998865554 2221 35566667666665 5568889
Q ss_pred HHHHHHHHhh
Q 015951 275 AVSLVGDLAK 284 (397)
Q Consensus 275 A~~lL~~L~~ 284 (397)
|+-+...++.
T Consensus 276 ACEFwla~ae 285 (885)
T KOG2023|consen 276 ACEFWLALAE 285 (885)
T ss_pred HHHHHHHHhc
Confidence 9999999986
No 97
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=95.81 E-value=0.067 Score=55.86 Aligned_cols=134 Identities=20% Similarity=0.246 Sum_probs=95.1
Q ss_pred HHHHHHhccCCCCchhHHHhcCCHHHHHHhc----------CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH
Q 015951 148 ALQELLILVEPIDNANDLSKLGGLSVLVGQL----------NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 217 (397)
Q Consensus 148 AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL----------~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll 217 (397)
+|+.|..+-.+..++..+..-.|+..|+.+- ..+++++...|..||+|+.-++|..|+.+.+.|+.+.++
T Consensus 1 ~L~~LRiLsRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~ 80 (446)
T PF10165_consen 1 CLETLRILSRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC 80 (446)
T ss_pred CHHHHHHHccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence 3566666777777777777777777777654 447899999999999999999999999999999999999
Q ss_pred HhhcCC-----CHHH---HHHHHHHHHHHhcCChhcHHHH-HhcCcHHHHHHhhcC--------CC-------ccHHHHH
Q 015951 218 KMVKSS-----FVEE---AVKALYTVSSLIRNNLAGQEMF-YVEAGDLMLQDILGN--------SS-------FEIRLHR 273 (397)
Q Consensus 218 ~LL~s~-----~~~v---~~kAl~ALS~LiR~~~~~~~~f-~~~gGi~~L~~lL~s--------~~-------~d~klr~ 273 (397)
..|+.. +.++ -.+-++-+.++. +..+..+ -+++|+..|...|.. .. .+...-.
T Consensus 81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~---~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~ 157 (446)
T PF10165_consen 81 ERLKNYSDSSQPSDVEFLDSRLLFLLTALR---PDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALS 157 (446)
T ss_pred HHHHcccccCCChhHHHHHHHHHHHHhcCC---hhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHH
Confidence 999876 3332 345555555442 3334444 456888888887631 00 1333455
Q ss_pred HHHHHHHHHhh
Q 015951 274 KAVSLVGDLAK 284 (397)
Q Consensus 274 kA~~lL~~L~~ 284 (397)
.+..++.|+..
T Consensus 158 EiLKllFNit~ 168 (446)
T PF10165_consen 158 EILKLLFNITL 168 (446)
T ss_pred HHHHHHHHhhh
Confidence 66777777764
No 98
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=95.77 E-value=0.044 Score=58.42 Aligned_cols=84 Identities=12% Similarity=0.182 Sum_probs=62.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 250 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~ 250 (397)
+..++...+ +++..+..|+..|....+.-|..++.. |..++.|..+++..+|+.|+.+|..++++++.....+
T Consensus 25 y~~il~~~k-g~~k~K~Laaq~I~kffk~FP~l~~~A-----i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv- 97 (556)
T PF05918_consen 25 YKEILDGVK-GSPKEKRLAAQFIPKFFKHFPDLQEEA-----INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV- 97 (556)
T ss_dssp HHHHHHGGG-S-HHHHHHHHHHHHHHHCC-GGGHHHH-----HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-
T ss_pred HHHHHHHcc-CCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-
Confidence 334444444 578999999999999999999999865 6679999999999999999999999999988766655
Q ss_pred hcCcHHHHHHhhcCC
Q 015951 251 VEAGDLMLQDILGNS 265 (397)
Q Consensus 251 ~~gGi~~L~~lL~s~ 265 (397)
..+|+++|+++
T Consensus 98 ----aDvL~QlL~td 108 (556)
T PF05918_consen 98 ----ADVLVQLLQTD 108 (556)
T ss_dssp ----HHHHHHHTT--
T ss_pred ----HHHHHHHHhcc
Confidence 47899999976
No 99
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=95.56 E-value=1.8 Score=48.75 Aligned_cols=120 Identities=15% Similarity=0.176 Sum_probs=77.6
Q ss_pred HHHHHHHHhh------CCCCCHHHHHHHHHHHHhccCCC----CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHH
Q 015951 127 LIQIAIDDLN------NSTLSLEDSQRALQELLILVEPI----DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKA 196 (397)
Q Consensus 127 lmk~~i~~L~------~~~~s~e~k~~AL~~L~~Lve~i----DnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~ 196 (397)
.|.=++++|. .+...+-.|.+||..+..+++-+ -.++.+..+ ..+-+.+.++++.--+|.+|||+++..
T Consensus 411 ~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~f-lv~hVfP~f~s~~g~Lrarac~vl~~~ 489 (1010)
T KOG1991|consen 411 ILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYF-LVNHVFPEFQSPYGYLRARACWVLSQF 489 (1010)
T ss_pred HHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHH-HHHHhhHhhcCchhHHHHHHHHHHHHH
Confidence 3444556665 22234556777777766655422 233444433 455566777888999999999999999
Q ss_pred hcCChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHH
Q 015951 197 SQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMF 249 (397)
Q Consensus 197 aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f 249 (397)
+.-+=+.+..+ ..++....+.|.+++ -.|++.|..||.+++.+.+.+...+
T Consensus 490 ~~~df~d~~~l--~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~ 541 (1010)
T KOG1991|consen 490 SSIDFKDPNNL--SEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKV 541 (1010)
T ss_pred HhccCCChHHH--HHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhH
Confidence 94322222222 235667777777444 5899999999999999887654444
No 100
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=2.8 Score=41.72 Aligned_cols=231 Identities=21% Similarity=0.176 Sum_probs=135.0
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951 129 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 206 (397)
Q Consensus 129 k~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l--GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~ 206 (397)
.+.++.+... +|..+..|.+.+..+.-. --..+.+. -.++.+.++++...+ -..|+.++.+++|+ +.+++.
T Consensus 6 ~elv~ll~~~--sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ 78 (353)
T KOG2973|consen 6 VELVELLHSL--SPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKK 78 (353)
T ss_pred HHHHHHhccC--ChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHH
Confidence 3455666554 467788888888887755 22222221 346677788877666 67899999999985 778888
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh-----cCcHHHHHHhhcCCCccHHH-HHHHHHHHH
Q 015951 207 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-----EAGDLMLQDILGNSSFEIRL-HRKAVSLVG 280 (397)
Q Consensus 207 vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~-----~gGi~~L~~lL~s~~~d~kl-r~kA~~lL~ 280 (397)
++.. .+..++.++.+.......-.+-.++|+.|........... ..|+.-|...+.+++.+.+. -...+.++.
T Consensus 79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~ 157 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA 157 (353)
T ss_pred HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence 8887 7777778887765556667777788888765443333221 13555444444333211100 122444555
Q ss_pred HHhhchh-c----cCC----------CCcchhHHhCCcHHHHH-------------------------------------
Q 015951 281 DLAKCQL-E----NMH----------KVEPPLFRDRFFLKSVV------------------------------------- 308 (397)
Q Consensus 281 ~L~~~~l-~----~~~----------~~~~~~l~~~g~v~~Lv------------------------------------- 308 (397)
||..... . ... .+-...++..|++..+-
T Consensus 158 nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~sEEd 237 (353)
T KOG2973|consen 158 NLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELSEED 237 (353)
T ss_pred HHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccCHHH
Confidence 5544210 0 000 00111222333332221
Q ss_pred --------Hhcc-----CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHhhhhhhhhhhHHhH
Q 015951 309 --------DLTA-----SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDV 373 (397)
Q Consensus 309 --------~lL~-----~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l~~~e~~~~~~~~l 373 (397)
+.|. .+|++++.+.+.||..|..-.. -|+.+| ..|..+.+.-+.. --+++|-.+-|+-+
T Consensus 238 m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~-GRe~lR-~kgvYpilRElhk----~e~ded~~~ace~v 309 (353)
T KOG2973|consen 238 MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRA-GREVLR-SKGVYPILRELHK----WEEDEDIREACEQV 309 (353)
T ss_pred HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhH-hHHHHH-hcCchHHHHHHhc----CCCcHHHHHHHHHH
Confidence 1121 2489999999999999887654 788898 6677677654432 22566666666654
No 101
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.45 E-value=0.99 Score=49.93 Aligned_cols=160 Identities=14% Similarity=0.173 Sum_probs=90.0
Q ss_pred HhHHHHHHHHHhcC-CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015951 107 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 185 (397)
Q Consensus 107 ~r~~~L~ea~~~~~-~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~i 185 (397)
+|.+-+|..+..+. +.+-..+....++... +.+.|-|.-.---|+.+.+ .+....+. .+..+..=|.++|+.|
T Consensus 35 ~kidAmK~iIa~M~~G~dmssLf~dViK~~~--trd~ElKrL~ylYl~~yak-~~P~~~lL---avNti~kDl~d~N~~i 108 (757)
T COG5096 35 KKIDAMKKIIAQMSLGEDMSSLFPDVIKNVA--TRDVELKRLLYLYLERYAK-LKPELALL---AVNTIQKDLQDPNEEI 108 (757)
T ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHhc-cCHHHHHH---HHHHHHhhccCCCHHH
Confidence 45566666665553 4443333333333333 2234444332222222222 12111111 3455556677788888
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015951 186 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 265 (397)
Q Consensus 186 r~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 265 (397)
|..|.+.++.+= .++ +-...++++.+++.++++-||+.|+.||..+-+-. ...+.+.|-+..+..++.+.
T Consensus 109 R~~AlR~ls~l~--~~e-----l~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~ 178 (757)
T COG5096 109 RGFALRTLSLLR--VKE-----LLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADS 178 (757)
T ss_pred HHHHHHHHHhcC--hHH-----HHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCC
Confidence 888888887662 221 22235777888888877888888888888875533 34555666677777777665
Q ss_pred CccHHHHHHHHHHHHHHhh
Q 015951 266 SFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 266 ~~d~klr~kA~~lL~~L~~ 284 (397)
++.+.+.|...+..+..
T Consensus 179 --dP~Vi~nAl~sl~~i~~ 195 (757)
T COG5096 179 --DPIVIANALASLAEIDP 195 (757)
T ss_pred --CchHHHHHHHHHHHhch
Confidence 45577777777766643
No 102
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.30 E-value=0.17 Score=54.49 Aligned_cols=208 Identities=18% Similarity=0.134 Sum_probs=121.6
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHhcCC--------------HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-----H
Q 015951 142 LEDSQRALQELLILVEPIDNANDLSKLGG--------------LSVLVGQLNHPDTDIRKISAWILGKASQNNP-----L 202 (397)
Q Consensus 142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGG--------------l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp-----~ 202 (397)
..+++.+++.|-+++++-|..-.=+...| ....+..+...+..||..|...+.-..+-.| +
T Consensus 193 ~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~kL~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e 272 (823)
T KOG2259|consen 193 THDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGFKLSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERE 272 (823)
T ss_pred cccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccccccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccch
Confidence 35667777778888888776533333333 5566778888999999999555544443332 0
Q ss_pred HHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc----------------------HHHH-----------
Q 015951 203 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG----------------------QEMF----------- 249 (397)
Q Consensus 203 ~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~----------------------~~~f----------- 249 (397)
.-+.=+.-.++..+...+++-+-.+|+.|.-+|+.+-.-+... -+..
T Consensus 273 ~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~ 352 (823)
T KOG2259|consen 273 SEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKE 352 (823)
T ss_pred hhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCcc
Confidence 1111111235667777777666566665555555432111110 0112
Q ss_pred -----------------HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc
Q 015951 250 -----------------YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA 312 (397)
Q Consensus 250 -----------------~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~ 312 (397)
+..|+-..+++.|.+. =..+|+.|+.-++.|+. +.|.+.. ..+..|+++++
T Consensus 353 ~~advpsee~d~~~~siI~sGACGA~VhGlEDE--f~EVR~AAV~Sl~~La~-----ssP~FA~-----~aldfLvDMfN 420 (823)
T KOG2259|consen 353 WNADVPSEEDDEEEESIIPSGACGALVHGLEDE--FYEVRRAAVASLCSLAT-----SSPGFAV-----RALDFLVDMFN 420 (823)
T ss_pred ccccCchhhccccccccccccccceeeeechHH--HHHHHHHHHHHHHHHHc-----CCCCcHH-----HHHHHHHHHhc
Confidence 2233345666666654 34589999999999985 3455433 34678899999
Q ss_pred CCChHHHHHHHHHHHHHhcCChHHHHHHHhc-CChHHHHHHHHHHhHHhh
Q 015951 313 SADLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQLQEVM 361 (397)
Q Consensus 313 ~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~-~gL~~~L~~Lr~~~~~l~ 361 (397)
.+..+|+.+|+.+|..++.+-....+.+... ..|+..-...|..++++.
T Consensus 421 DE~~~VRL~ai~aL~~Is~~l~i~eeql~~il~~L~D~s~dvRe~l~elL 470 (823)
T KOG2259|consen 421 DEIEVVRLKAIFALTMISVHLAIREEQLRQILESLEDRSVDVREALRELL 470 (823)
T ss_pred cHHHHHHHHHHHHHHHHHHHheecHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9999999999999999887632111122211 223444444555555544
No 103
>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1. Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].
Probab=95.29 E-value=0.2 Score=48.62 Aligned_cols=102 Identities=18% Similarity=0.079 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh
Q 015951 143 EDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 220 (397)
Q Consensus 143 e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL 220 (397)
.....||..|+.++- ..+...-|+..+++..++++| .+..+.++..+..++-++.-.+|..+..|-+.+|+..++.++
T Consensus 106 ~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll 185 (257)
T PF08045_consen 106 SLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL 185 (257)
T ss_pred HHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence 346678999998774 356677899999999999999 456799999999999999999999999999999999999999
Q ss_pred cCCC--HHHHHHHHHHHHHHhcCChh
Q 015951 221 KSSF--VEEAVKALYTVSSLIRNNLA 244 (397)
Q Consensus 221 ~s~~--~~v~~kAl~ALS~LiR~~~~ 244 (397)
++.+ .+++.|.+--|--.+-.-.+
T Consensus 186 k~~~~~~~~r~K~~EFL~fyl~~E~~ 211 (257)
T PF08045_consen 186 KSKSTDRELRLKCIEFLYFYLMPETP 211 (257)
T ss_pred ccccccHHHhHHHHHHHHHHHcccCC
Confidence 9865 57888877666655544333
No 104
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=95.27 E-value=0.45 Score=53.18 Aligned_cols=183 Identities=17% Similarity=0.139 Sum_probs=108.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhcCChHH
Q 015951 125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNNPLV 203 (397)
Q Consensus 125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~-~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~ 203 (397)
..+..+++..+.++..+...|+-|+-.|-++ +...+.-...+++ .+++.++|++++|+..|+.+||+++-+|-.
T Consensus 816 ~s~a~kl~~~~~s~~s~~~ikvfa~LslGEl----gr~~~~s~~~e~~~~iieaf~sp~edvksAAs~ALGsl~vgnl~- 890 (1233)
T KOG1824|consen 816 KSLATKLIQDLQSPKSSDSIKVFALLSLGEL----GRRKDLSPQNELKDTIIEAFNSPSEDVKSAASYALGSLAVGNLP- 890 (1233)
T ss_pred hhHHHHHHHHHhCCCCchhHHHHHHhhhhhh----ccCCCCCcchhhHHHHHHHcCCChHHHHHHHHHHhhhhhcCchH-
Confidence 3455667777777766666777777777654 3333333344444 556899999999999999999999985421
Q ss_pred HHHHHHcCcHHHHHHhhcCCC-----------------------------------------HHHHHHHHHHHHHHhcCC
Q 015951 204 QKQVLELGALSKLMKMVKSSF-----------------------------------------VEEAVKALYTVSSLIRNN 242 (397)
Q Consensus 204 Q~~vl~~g~lp~Ll~LL~s~~-----------------------------------------~~v~~kAl~ALS~LiR~~ 242 (397)
..+|.++....+.. +..|.-..-+|+-++-.+
T Consensus 891 -------~yLpfil~qi~sqpk~QyLLLhSlkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~l~e 963 (1233)
T KOG1824|consen 891 -------KYLPFILEQIESQPKRQYLLLHSLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLVLIE 963 (1233)
T ss_pred -------hHHHHHHHHHhcchHhHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHHhCC
Confidence 23333333333321 111222222333332222
Q ss_pred hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHH
Q 015951 243 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKA 322 (397)
Q Consensus 243 ~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~a 322 (397)
|. .-++.|...+.++. ...|.-+++++.+..+. ++.-...+.. ..+.....+++.+|..|+..|
T Consensus 964 pe--------sLlpkL~~~~~S~a--~~~rs~vvsavKfsisd-----~p~~id~~lk-~~ig~fl~~~~dpDl~Vrrva 1027 (1233)
T KOG1824|consen 964 PE--------SLLPKLKLLLRSEA--SNTRSSVVSAVKFSISD-----QPQPIDPLLK-QQIGDFLKLLRDPDLEVRRVA 1027 (1233)
T ss_pred hH--------HHHHHHHHHhcCCC--cchhhhhhheeeeeecC-----CCCccCHHHH-HHHHHHHHHHhCCchhHHHHH
Confidence 21 12344555555552 23555666666655542 3333333332 345566778899999999999
Q ss_pred HHHHHHHhcCChH
Q 015951 323 LAAIKNLLQLRTT 335 (397)
Q Consensus 323 L~aL~~L~~~~~~ 335 (397)
+.++.+.+.+.+.
T Consensus 1028 Lvv~nSaahNKps 1040 (1233)
T KOG1824|consen 1028 LVVLNSAAHNKPS 1040 (1233)
T ss_pred HHHHHHHHccCHh
Confidence 9999999977543
No 105
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.25 E-value=0.52 Score=42.79 Aligned_cols=90 Identities=21% Similarity=0.213 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--HHHHH
Q 015951 182 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQ 259 (397)
Q Consensus 182 ~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gG--i~~L~ 259 (397)
+|.||..+.-++|-++...|..-+ ..+|.+...|.++++.||..|+..|+.++.+. +++..| +..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d------~ik~k~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILED------MIKVKGQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC------ceeehhhhhHHHH
Confidence 588999999999999988774333 36899999999999999999999999998653 222222 25666
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 260 DILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 260 ~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
.++.++ +..+|..|..++..+..
T Consensus 70 ~~l~D~--~~~Ir~~A~~~~~e~~~ 92 (178)
T PF12717_consen 70 KLLVDE--NPEIRSLARSFFSELLK 92 (178)
T ss_pred HHHcCC--CHHHHHHHHHHHHHHHH
Confidence 777766 66799999999999875
No 106
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=95.19 E-value=0.45 Score=46.08 Aligned_cols=170 Identities=15% Similarity=0.102 Sum_probs=116.2
Q ss_pred CHHHHHHHHHHHhhCCC---CCH---HHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCC-----CHHHHHHHHH
Q 015951 123 SDAQLIQIAIDDLNNST---LSL---EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP-----DTDIRKISAW 191 (397)
Q Consensus 123 ~d~~lmk~~i~~L~~~~---~s~---e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~-----~~~ir~~Aa~ 191 (397)
+-+.+.++.+.++..-+ .+. ..-.+||.-|+-.+...|....|.+..-.--|.++|+.+ -+-+|-.+..
T Consensus 39 ~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLG 118 (262)
T PF04078_consen 39 TIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLG 118 (262)
T ss_dssp HHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHH
Confidence 34567777777764322 233 234578888888888899999999987766666777543 3679999999
Q ss_pred HHHHHhcC-ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh------cHHHHHh-cCcHHHHHHhhc
Q 015951 192 ILGKASQN-NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA------GQEMFYV-EAGDLMLQDILG 263 (397)
Q Consensus 192 vLg~~aqN-Np~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~------~~~~f~~-~gGi~~L~~lL~ 263 (397)
+||.++++ ++++-..+++...+|..++.+..+++--+..|.|-+.-++-+... ..+.|.. ...+..++..+.
T Consensus 119 VIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~ 198 (262)
T PF04078_consen 119 VIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLV 198 (262)
T ss_dssp HHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHc
Confidence 99999984 667888888999999999999998877788999999888765432 2244443 234444444443
Q ss_pred CCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015951 264 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 299 (397)
Q Consensus 264 s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~ 299 (397)
.. .+.|+-+.+..+-..|+. ++..++.+.
T Consensus 199 ~~-pS~RLLKhIIrCYlRLsd------nprar~aL~ 227 (262)
T PF04078_consen 199 KQ-PSPRLLKHIIRCYLRLSD------NPRAREALR 227 (262)
T ss_dssp HS---HHHHHHHHHHHHHHTT------STTHHHHHH
T ss_pred cC-CChhHHHHHHHHHHHHcc------CHHHHHHHH
Confidence 22 266788888888888774 555555554
No 107
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.18 E-value=3.5 Score=42.84 Aligned_cols=223 Identities=15% Similarity=0.075 Sum_probs=145.1
Q ss_pred HHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-------C--hHHHHHHHHcCcHHH
Q 015951 145 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-------N--PLVQKQVLELGALSK 215 (397)
Q Consensus 145 k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqN-------N--p~~Q~~vl~~g~lp~ 215 (397)
...+++.+--+....|-=-.|++++|++.++++|.|.|.+|-......+..+.-- + ...-++.++.++++.
T Consensus 101 Lhd~IQ~mhvlAt~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaL 180 (536)
T KOG2734|consen 101 LHDIIQEMHVLATMPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLAL 180 (536)
T ss_pred HHHHHHHHHhhhcChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHH
Confidence 3455677777778888888999999999999999999999999999999888732 1 135567778899999
Q ss_pred HHHhhcCCCHHH------HHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015951 216 LMKMVKSSFVEE------AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 289 (397)
Q Consensus 216 Ll~LL~s~~~~v------~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~ 289 (397)
|++.+..=++++ ...++.-+-|++.-.+......++.|-+.-|..-+.....-..-+..|.-.++-+..+
T Consensus 181 LvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~---- 256 (536)
T KOG2734|consen 181 LVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQN---- 256 (536)
T ss_pred HHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhcc----
Confidence 999887433322 2345555566666556666777777656655543332211122456677777766642
Q ss_pred CCCCcchhHHhCCcHHHHHHhccC---------CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHH--HHHHHHHHh-
Q 015951 290 MHKVEPPLFRDRFFLKSVVDLTAS---------ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDT--ALERLRQQL- 357 (397)
Q Consensus 290 ~~~~~~~~l~~~g~v~~Lv~lL~~---------~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~--~L~~Lr~~~- 357 (397)
+.+.+..+-.-..+..+..-+.. +....-|+.-.+|+++...+. .|..|-..-|+.- ++.+.+...
T Consensus 257 -s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~-nr~~Fl~~EGlqLm~Lmlr~Kk~sr 334 (536)
T KOG2734|consen 257 -SDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPA-NRERFLKGEGLQLMNLMLREKKVSR 334 (536)
T ss_pred -CchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChh-hhhhhhccccHHHHHHHHHHHHHhh
Confidence 22345555555666666655432 245788899999999998865 6777776667533 333332221
Q ss_pred -------HHhhhhhhhhhhHHhH
Q 015951 358 -------QEVMLEEDQRDYAMDV 373 (397)
Q Consensus 358 -------~~l~~~e~~~~~~~~l 373 (397)
+..+.-.+.++||..+
T Consensus 335 ~SalkvLd~am~g~~gt~~C~kf 357 (536)
T KOG2734|consen 335 GSALKVLDHAMFGPEGTPNCNKF 357 (536)
T ss_pred hhHHHHHHHHHhCCCchHHHHHH
Confidence 1223345578888764
No 108
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.08 E-value=0.9 Score=48.52 Aligned_cols=172 Identities=16% Similarity=0.144 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCcHHHHHHhh
Q 015951 143 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ--NNPLVQKQVLELGALSKLMKMV 220 (397)
Q Consensus 143 e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aq--NNp~~Q~~vl~~g~lp~Ll~LL 220 (397)
..|..+++-+.-+.+..+-.-.++--..+|.+.+.|..+.+++|..+-.+|-.++. .||..|. .+|.|++.+
T Consensus 269 rtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~------~ip~Lld~l 342 (569)
T KOG1242|consen 269 RTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQK------IIPTLLDAL 342 (569)
T ss_pred hhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHH------HHHHHHHHh
Confidence 45778888888776666666666666789999999999999999999999988775 5676554 579999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC--CccHHHHHHHHHHHHHHhhchhccCCCC-cchh
Q 015951 221 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKV-EPPL 297 (397)
Q Consensus 221 ~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~--~~d~klr~kA~~lL~~L~~~~l~~~~~~-~~~~ 297 (397)
.+++..+ .+++..|+.-. .-.++++--+.+++.+|+.+ ..+..++++++-.+.|+|..- .++. ..+.
T Consensus 343 ~dp~~~~-~e~~~~L~~tt------FV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~Lv---eDp~~lapf 412 (569)
T KOG1242|consen 343 ADPSCYT-PECLDSLGATT------FVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLV---EDPKDLAPF 412 (569)
T ss_pred cCcccch-HHHHHhhccee------eeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhh---cCHHHHhhh
Confidence 8765322 23333333211 11233445566666665422 013347899999999999731 1221 1111
Q ss_pred HHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 298 FRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 298 l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
+- .+++.+=..+....+++|+.+++||..+...
T Consensus 413 l~--~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~ 445 (569)
T KOG1242|consen 413 LP--SLLPGLKENLDDAVPEVRAVAARALGALLER 445 (569)
T ss_pred HH--HHhhHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 11 2333333444455899999999999888754
No 109
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=95.01 E-value=0.57 Score=40.63 Aligned_cols=72 Identities=17% Similarity=0.089 Sum_probs=58.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-HHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCCh
Q 015951 172 SVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNL 243 (397)
Q Consensus 172 ~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~-~Q~~vl~~g~lp~Ll~LL~s~---~~~v~~kAl~ALS~LiR~~~ 243 (397)
..|-.-|+++++.++..|..+|-.+++|... ++..+.....+..|++++... +..|+.|++.-|-+-...++
T Consensus 40 raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~ 115 (133)
T cd03561 40 RAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFG 115 (133)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3344567889999999999999999999865 888888888888899999863 46889998888877655544
No 110
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.92 E-value=0.12 Score=42.64 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=51.4
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH--cCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015951 169 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE--LGALSKLMKMVKSSFVEEAVKALYTVSSLI 239 (397)
Q Consensus 169 GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~--~g~lp~Ll~LL~s~~~~v~~kAl~ALS~Li 239 (397)
--+++++.++..++..||..||.+|.+++.. .+..++. ...++.|.+++.+.++.||..| .-|-.++
T Consensus 27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 27 EILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHHh
Confidence 3589999999999999999999999999964 4555553 2577888888888888877655 4444443
No 111
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.92 E-value=0.57 Score=50.68 Aligned_cols=179 Identities=15% Similarity=0.142 Sum_probs=115.2
Q ss_pred HHHHHHHHhccCCCC-chhHHHhc-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHH--HcCcHHHHHHhhc
Q 015951 146 QRALQELLILVEPID-NANDLSKL-GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL--ELGALSKLMKMVK 221 (397)
Q Consensus 146 ~~AL~~L~~Lve~iD-nA~~~~~l-GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl--~~g~lp~Ll~LL~ 221 (397)
+.+|+-+..|++... ....++.- |....++.|+..+-|+||..|...||.++...+ +.+. -...+|.|-.-++
T Consensus 637 I~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D~~peVRQS~FALLGDltk~c~---~~v~p~~~~fl~~lg~Nl~ 713 (885)
T KOG2023|consen 637 IVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQDEVPEVRQSAFALLGDLTKACF---EHVIPNLADFLPILGANLN 713 (885)
T ss_pred EEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH---HhccchHHHHHHHHhhcCC
Confidence 346666666666543 23334433 445566689999999999999999999997532 2222 1245666666666
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015951 222 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR 301 (397)
Q Consensus 222 s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~ 301 (397)
.+..++.-.|+|||+-++-......+.++ ...+.-|..+++.++++..+-.+.+-.++.|.. ..|+...--.+
T Consensus 714 ~~~isv~nNA~WAiGeia~k~g~~~~~~v-~~vl~~L~~iin~~~~~~tllENtAITIGrLg~-----~~Pe~vAp~l~- 786 (885)
T KOG2023|consen 714 PENISVCNNAIWAIGEIALKMGLKMKQYV-SPVLEDLITIINRQNTPKTLLENTAITIGRLGY-----ICPEEVAPHLD- 786 (885)
T ss_pred hhhchHHHHHHHHHHHHHHHhchhhhhHH-HHHHHHHHHHhcccCchHHHHHhhhhhhhhhhc-----cCHHhcchhHH-
Confidence 66677888999999988765444434443 345667777778776677778888888877754 12222111112
Q ss_pred CcHHHHHHhccC-CChHHHHHHHHHHHHHhcCCh
Q 015951 302 FFLKSVVDLTAS-ADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 302 g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~~~~ 334 (397)
.+++.-..-|+. +|..-++.|-+.+.++...++
T Consensus 787 ~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp 820 (885)
T KOG2023|consen 787 SFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNP 820 (885)
T ss_pred HHHHHHHHHhcccccchhHHHHHHHHHHheeeCc
Confidence 233333333443 566788899999999888765
No 112
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=94.85 E-value=0.052 Score=34.95 Aligned_cols=30 Identities=13% Similarity=0.171 Sum_probs=26.5
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015951 212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRN 241 (397)
Q Consensus 212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~ 241 (397)
.+|.+++++++++++||..|+++|+.++++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 379999999999999999999999999865
No 113
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=94.78 E-value=0.44 Score=47.11 Aligned_cols=93 Identities=18% Similarity=0.157 Sum_probs=75.0
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015951 169 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 248 (397)
Q Consensus 169 GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~ 248 (397)
-.++.++.++.+++..+|..|++.++..... -++|.|..++.+.+..+|..|+++|+.+ +++.
T Consensus 43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~--~~~~---- 105 (335)
T COG1413 43 EAADELLKLLEDEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGEL--GDPE---- 105 (335)
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHcc--CChh----
Confidence 4788888999999999999999997776532 4799999999999999999999988876 2333
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 249 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 249 f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
.++.|+.++.++ .+..+|..++++|..+-.
T Consensus 106 -----a~~~li~~l~~d-~~~~vR~~aa~aL~~~~~ 135 (335)
T COG1413 106 -----AVPPLVELLEND-ENEGVRAAAARALGKLGD 135 (335)
T ss_pred -----HHHHHHHHHHcC-CcHhHHHHHHHHHHhcCc
Confidence 456677888742 367799999999998753
No 114
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.74 E-value=0.67 Score=50.97 Aligned_cols=186 Identities=19% Similarity=0.206 Sum_probs=111.5
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015951 120 KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN 199 (397)
Q Consensus 120 ~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqN 199 (397)
|-|+-+-.| +|++.+.++.+. |-|+.=|-....|=|..| ++-+ ..-.|.+=|+|++--+...|.-+||+++.
T Consensus 65 GypahFGqi-eclKLias~~f~-dKRiGYLaamLlLdE~qd----vllL-ltNslknDL~s~nq~vVglAL~alg~i~s- 136 (866)
T KOG1062|consen 65 GYPAHFGQI-ECLKLIASDNFL-DKRIGYLAAMLLLDERQD----LLLL-LTNSLKNDLNSSNQYVVGLALCALGNICS- 136 (866)
T ss_pred CCCccchhh-HHHHHhcCCCch-HHHHHHHHHHHHhccchH----HHHH-HHHHHHhhccCCCeeehHHHHHHhhccCC-
Confidence 445544443 466666666655 566665555554434433 2211 11123345788999999999999999984
Q ss_pred ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015951 200 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 279 (397)
Q Consensus 200 Np~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL 279 (397)
|+.- ....|.+-+++++.++-+|+||+.|.--++|.-|...+.|+. .-..+|.+. +..+-.-++.++
T Consensus 137 -~Ema-----rdlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l~e~f~~-----~~~~lL~ek--~hGVL~~~l~l~ 203 (866)
T KOG1062|consen 137 -PEMA-----RDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDLVEHFVI-----AFRKLLCEK--HHGVLIAGLHLI 203 (866)
T ss_pred -HHHh-----HHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchHHHHhhH-----HHHHHHhhc--CCceeeeHHHHH
Confidence 4322 246788889999988999999999999999999887777752 223344433 223444555566
Q ss_pred HHHhhchhccCCCCcchhHHhCCcHHHHHHhccC---------------CChHHHHHHHHHHHHHhcCC
Q 015951 280 GDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS---------------ADLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 280 ~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~---------------~d~dv~E~aL~aL~~L~~~~ 333 (397)
..||. .+++....+.+ +++.+|..|+. +||=+|-+.++.|+-|-+..
T Consensus 204 ~e~c~-----~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d 265 (866)
T KOG1062|consen 204 TELCK-----ISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQND 265 (866)
T ss_pred HHHHh-----cCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCC
Confidence 66664 23344444443 33333333321 25555666665555555543
No 115
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.72 E-value=0.24 Score=53.99 Aligned_cols=153 Identities=12% Similarity=0.062 Sum_probs=107.2
Q ss_pred CCHHHHHHhcCC--CC-----HHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015951 169 GGLSVLVGQLNH--PD-----TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 241 (397)
Q Consensus 169 GGl~~Li~lL~s--~~-----~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~ 241 (397)
+.+|.|+++|.. ++ =.+-..|..||.-.+|. +.+.++. -++|-+=+-+++++-.-|..|+.|.+|+.-+
T Consensus 319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g 394 (859)
T KOG1241|consen 319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEG 394 (859)
T ss_pred HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcC
Confidence 456677787744 21 23677788888888875 4455554 3555555566676667789999999999987
Q ss_pred ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHH
Q 015951 242 NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 321 (397)
Q Consensus 242 ~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~ 321 (397)
-.+.+..-+..++++.++.++.++ ..-++.-++|.++.++.. ..+.......-.+.+..+++-|+. .+.+-.+
T Consensus 395 p~~~~Lt~iV~qalp~ii~lm~D~--sl~VkdTaAwtlgrI~d~----l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N 467 (859)
T KOG1241|consen 395 PEPDKLTPIVIQALPSIINLMSDP--SLWVKDTAAWTLGRIADF----LPEAIINQELLQSKLSALLEGLND-EPRVASN 467 (859)
T ss_pred CchhhhhHHHhhhhHHHHHHhcCc--hhhhcchHHHHHHHHHhh----chhhcccHhhhhHHHHHHHHHhhh-CchHHHH
Confidence 666666667789999999999976 445778899999999863 122222333334555555555543 6788899
Q ss_pred HHHHHHHHhcC
Q 015951 322 ALAAIKNLLQL 332 (397)
Q Consensus 322 aL~aL~~L~~~ 332 (397)
+..|+.+|+..
T Consensus 468 ~CWAf~~Laea 478 (859)
T KOG1241|consen 468 VCWAFISLAEA 478 (859)
T ss_pred HHHHHHHHHHH
Confidence 99999999854
No 116
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.71 E-value=0.77 Score=50.23 Aligned_cols=163 Identities=18% Similarity=0.155 Sum_probs=123.1
Q ss_pred HHHHHH-HHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc
Q 015951 143 EDSQRA-LQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 221 (397)
Q Consensus 143 e~k~~A-L~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~ 221 (397)
+.+..| -..+.+..-..|+ .+.++.++.+....+-+++...---+.+-++..|.-+. ++++.+++=..
T Consensus 28 ~kr~~a~kkvIa~Mt~G~Dv------SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~a~-----~avnt~~kD~~ 96 (734)
T KOG1061|consen 28 EKRKDAVKKVIAYMTVGKDV------SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDLAI-----LAVNTFLKDCE 96 (734)
T ss_pred hhHHHHHHHHHhcCccCcch------HhhhHHHHhhcccCCchHHHHHHHHHHHhhccCchHHH-----hhhhhhhccCC
Confidence 344444 4445544444443 24688899999888999999999999999999995443 56777777777
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC
Q 015951 222 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR 301 (397)
Q Consensus 222 s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~ 301 (397)
+.++.+|..|+...+++ |- +... ..-..+|..+++++ +..+|+.|+..+..|-. ...+...+.
T Consensus 97 d~np~iR~lAlrtm~~l-~v-~~i~-----ey~~~Pl~~~l~d~--~~yvRktaa~~vakl~~--------~~~~~~~~~ 159 (734)
T KOG1061|consen 97 DPNPLIRALALRTMGCL-RV-DKIT-----EYLCDPLLKCLKDD--DPYVRKTAAVCVAKLFD--------IDPDLVEDS 159 (734)
T ss_pred CCCHHHHHHHhhceeeE-ee-hHHH-----HHHHHHHHHhccCC--ChhHHHHHHHHHHHhhc--------CChhhcccc
Confidence 77888999999988876 32 1111 22457888899886 56789999888888752 334557789
Q ss_pred CcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951 302 FFLKSVVDLTASADLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 302 g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 333 (397)
|++..|-+++...++.|.-.|+.+|..+....
T Consensus 160 gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~ 191 (734)
T KOG1061|consen 160 GLVDALKDLLSDSNPMVVANALAALSEIHESH 191 (734)
T ss_pred chhHHHHHHhcCCCchHHHHHHHHHHHHHHhC
Confidence 99999999999889999999999999998764
No 117
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=94.62 E-value=2.2 Score=43.04 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC---cHHHH
Q 015951 182 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLML 258 (397)
Q Consensus 182 ~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g---Gi~~L 258 (397)
++++--.+-.+|..++.. +.+-..++....+-.+.+.+..++=++..-|...+..+...|+.....|+..+ =+...
T Consensus 136 ~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~ 214 (335)
T PF08569_consen 136 NPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKY 214 (335)
T ss_dssp STTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHH
T ss_pred CccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 456666666777777764 44555677777777788888877778889999999998888888888888765 34577
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC-cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHH
Q 015951 259 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA 337 (397)
Q Consensus 259 ~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~-~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r 337 (397)
..+|.++ +.=+|+.++-+|+.|.... .+-. ...++.+..-++.++.+|++....+|-.|-....-++..+...+
T Consensus 215 ~~Ll~s~--NYvtkrqslkLL~ellldr---~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~ 289 (335)
T PF08569_consen 215 NKLLESS--NYVTKRQSLKLLGELLLDR---SNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPP 289 (335)
T ss_dssp HHHCT-S--SHHHHHHHHHHHHHHHHSG---GGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BH
T ss_pred HHHccCC--CeEeehhhHHHHHHHHHch---hHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCCh
Confidence 7788886 4558999999999998631 1111 12344566778889999999999999999999999998876443
Q ss_pred H
Q 015951 338 L 338 (397)
Q Consensus 338 ~ 338 (397)
.
T Consensus 290 ~ 290 (335)
T PF08569_consen 290 P 290 (335)
T ss_dssp H
T ss_pred H
Confidence 3
No 118
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=94.59 E-value=0.37 Score=39.74 Aligned_cols=93 Identities=12% Similarity=-0.005 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015951 186 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 265 (397)
Q Consensus 186 r~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 265 (397)
|..+...|+.++...+..-...++ -.+|+++..+.+.+..||..|+.||.++++......-.+ =..-+..|.+++.++
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~-f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPY-FNEIFDALCKLSADP 80 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCC
Confidence 556677777776655554333333 379999999999999999999999999998765432221 146788889988886
Q ss_pred CccHHHHHHHHHHHHHHh
Q 015951 266 SFEIRLHRKAVSLVGDLA 283 (397)
Q Consensus 266 ~~d~klr~kA~~lL~~L~ 283 (397)
+..+|. ++.+|-.|.
T Consensus 81 --d~~Vr~-~a~~Ld~ll 95 (97)
T PF12755_consen 81 --DENVRS-AAELLDRLL 95 (97)
T ss_pred --chhHHH-HHHHHHHHh
Confidence 555555 556655554
No 119
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=94.45 E-value=0.77 Score=39.89 Aligned_cols=106 Identities=17% Similarity=0.180 Sum_probs=74.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHH
Q 015951 112 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAW 191 (397)
Q Consensus 112 L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~ 191 (397)
+.+|-+......|++.+.+..+.++.....+.+ ++..|-.-|++++|.++..|..
T Consensus 5 i~kATs~~l~~~dw~~~l~icD~i~~~~~~~k~-------------------------a~r~l~krl~~~n~~v~l~AL~ 59 (133)
T smart00288 5 IDKATSPSLLEEDWELILEICDLINSTPDGPKD-------------------------AVRLLKKRLNNKNPHVALLALT 59 (133)
T ss_pred HHHHcCcCCCCcCHHHHHHHHHHHhCCCccHHH-------------------------HHHHHHHHHcCCCHHHHHHHHH
Confidence 344444333445666666666666554322221 1222445678899999999999
Q ss_pred HHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCC
Q 015951 192 ILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNN 242 (397)
Q Consensus 192 vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s~~--~~v~~kAl~ALS~LiR~~ 242 (397)
+|-.+++|. +.++..+...+.+..|.++++... +.|+.+++..+.+-...+
T Consensus 60 lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f 113 (133)
T smart00288 60 LLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAF 113 (133)
T ss_pred HHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHH
Confidence 999999995 668888889999999999998754 348888888887765433
No 120
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=94.43 E-value=1.6 Score=39.65 Aligned_cols=89 Identities=20% Similarity=0.163 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCc-HHHHHHhh
Q 015951 143 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE-LGA-LSKLMKMV 220 (397)
Q Consensus 143 e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~-~g~-lp~Ll~LL 220 (397)
.-|.+++-.+-+++-...+--+ .-++.+..+|+++++.||..|..+|..+.+++. ++ .|- +..++.++
T Consensus 3 ~vR~n~i~~l~DL~~r~~~~ve----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~------ik~k~~l~~~~l~~l 72 (178)
T PF12717_consen 3 SVRNNAIIALGDLCIRYPNLVE----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM------IKVKGQLFSRILKLL 72 (178)
T ss_pred HHHHHHHHHHHHHHHhCcHHHH----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc------eeehhhhhHHHHHHH
Confidence 4566666667666654432211 236777789999999999999999999997644 22 133 48888999
Q ss_pred cCCCHHHHHHHHHHHHHHhcC
Q 015951 221 KSSFVEEAVKALYTVSSLIRN 241 (397)
Q Consensus 221 ~s~~~~v~~kAl~ALS~LiR~ 241 (397)
.+++++++..|.+.+..+...
T Consensus 73 ~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 73 VDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred cCCCHHHHHHHHHHHHHHHHh
Confidence 988999999999999998876
No 121
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.40 E-value=5.2 Score=38.74 Aligned_cols=189 Identities=17% Similarity=0.135 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHhccCC-CCchhHHHh-cCCHHHHHH-hcC----------CCCHHHHH-HHHHHHHHHhcCChHHHHHHH
Q 015951 143 EDSQRALQELLILVEP-IDNANDLSK-LGGLSVLVG-QLN----------HPDTDIRK-ISAWILGKASQNNPLVQKQVL 208 (397)
Q Consensus 143 e~k~~AL~~L~~Lve~-iDnA~~~~~-lGGl~~Li~-lL~----------s~~~~ir~-~Aa~vLg~~aqNNp~~Q~~vl 208 (397)
+.++.||.+|..--+. .|.|-.+-. .|-...+++ .+. ++...-|. +|..++..+ ..+|+.+..|+
T Consensus 39 p~rE~aL~ELskkre~~~dlA~~lW~s~g~~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcv-ASHpdTr~~FL 117 (293)
T KOG3036|consen 39 PTREMALLELSKKREPFPDLAPMLWHSFGTMVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCV-ASHPDTRRAFL 117 (293)
T ss_pred chHHHHHHHHHHhccCCccccHHHHHhcchHHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHH-hcCcchHHHHH
Confidence 5678888888887765 467765444 444444443 221 12233444 444445444 46899999999
Q ss_pred HcCcHHHHHHhhcCC----C-HHHHHHHHHHHHHHhcCChhcHHHHH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015951 209 ELGALSKLMKMVKSS----F-VEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 282 (397)
Q Consensus 209 ~~g~lp~Ll~LL~s~----~-~~v~~kAl~ALS~LiR~~~~~~~~f~-~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L 282 (397)
+...--.|-.+|... + +-.|-.+++-|++++++.......|. ..+.++...+.+..++ .-.|.-|+|.+.-+
T Consensus 118 ~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCLrime~GS--elSKtvA~fIlqKI 195 (293)
T KOG3036|consen 118 RAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCLRIMESGS--ELSKTVATFILQKI 195 (293)
T ss_pred HccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHHHHHhccc--HHHHHHHHHHHHHH
Confidence 986543444444432 2 34699999999999998766666665 5688999999999873 34677888888877
Q ss_pred hhchhccCCCC-------cchhHHh-CCcHHH-HHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951 283 AKCQLENMHKV-------EPPLFRD-RFFLKS-VVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 341 (397)
Q Consensus 283 ~~~~l~~~~~~-------~~~~l~~-~g~v~~-Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~ 341 (397)
.. ++. ..+.|.. .-++.. +.++.+.+++.+..+++++...|..... .|..++
T Consensus 196 ll------dD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpr-ar~aL~ 256 (293)
T KOG3036|consen 196 LL------DDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPR-ARAALR 256 (293)
T ss_pred hh------ccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHH-HHHHHH
Confidence 64 221 1112211 112222 3445567899999999999999997754 666665
No 122
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.34 E-value=0.91 Score=49.51 Aligned_cols=108 Identities=14% Similarity=0.233 Sum_probs=73.4
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH----HHHc-----------------------------CcHHHH
Q 015951 170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ----VLEL-----------------------------GALSKL 216 (397)
Q Consensus 170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~----vl~~-----------------------------g~lp~L 216 (397)
.+|.|.+=|..++|.|+..|..+|+.+|.-||+.--. |++. ..+|+|
T Consensus 182 ~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLiepl 261 (877)
T KOG1059|consen 182 CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPI 261 (877)
T ss_pred hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHH
Confidence 5788888889999999999999999999887732110 1110 233444
Q ss_pred HHhhc-------------------------------------------CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC
Q 015951 217 MKMVK-------------------------------------------SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 253 (397)
Q Consensus 217 l~LL~-------------------------------------------s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g 253 (397)
..++. ++++.++--++.|+|-+...||.+.+++.
T Consensus 262 t~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~k--- 338 (877)
T KOG1059|consen 262 TELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHK--- 338 (877)
T ss_pred HHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhH---
Confidence 43333 33334445566677777777776666553
Q ss_pred cHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 254 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 254 Gi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
++++++|.+. |..+|.+|.-+++-+++
T Consensus 339 --dlIlrcL~Dk--D~SIRlrALdLl~gmVs 365 (877)
T KOG1059|consen 339 --DLILRCLDDK--DESIRLRALDLLYGMVS 365 (877)
T ss_pred --HHHHHHhccC--CchhHHHHHHHHHHHhh
Confidence 5678888876 56688899999999985
No 123
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.23 E-value=1.8 Score=42.62 Aligned_cols=109 Identities=17% Similarity=0.126 Sum_probs=80.2
Q ss_pred CCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH-
Q 015951 169 GGLSVLV-GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ- 246 (397)
Q Consensus 169 GGl~~Li-~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~- 246 (397)
+.+..+| +.+.++++.||..|..|+|-.|-=+.+.-. ..++.+.+.++.++.+++..|+.+|.-++.-|....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 5566666 789999999999999999999976553222 247888888877788999999999998877665321
Q ss_pred HHHHh-------cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 247 EMFYV-------EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 247 ~~f~~-------~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
..... ..-...+...+.+. +..++..|+--++-|..
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSE--NPELQAIAVEGLCKLLL 143 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHh
Confidence 11111 22355667777766 55689999999998875
No 124
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.20 E-value=0.47 Score=48.93 Aligned_cols=109 Identities=16% Similarity=0.119 Sum_probs=82.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHH-------------HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLV-------------QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 237 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~-------------Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~ 237 (397)
+..|+.+|.+ +++...||..++.+....+.+ ++.++.. .+|+|++-.++.+.+.+..-+.|||.
T Consensus 273 ~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~~~~~~k~~yL~ALs~ 349 (415)
T PF12460_consen 273 LDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKEADDEIKSNYLTALSH 349 (415)
T ss_pred HHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhhcChhhHHHHHHHHHH
Confidence 4456666665 888999999999999773433 4555543 79999999998887788999999999
Q ss_pred HhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 238 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 238 LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
++++-|...-.=.-..-+++|.+.|..+ +..++.-+...+..+..
T Consensus 350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~--~~~v~~s~L~tL~~~l~ 394 (415)
T PF12460_consen 350 LLKNVPKSVLLPELPTLLPLLLQSLSLP--DADVLLSSLETLKMILE 394 (415)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Confidence 9998775332222235788899999876 44588899999998886
No 125
>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]
Probab=94.17 E-value=2.6 Score=40.74 Aligned_cols=159 Identities=16% Similarity=0.125 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHhhC---CCCCH---HHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcC-----CCCHHHHHHHHHH
Q 015951 124 DAQLIQIAIDDLNN---STLSL---EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-----HPDTDIRKISAWI 192 (397)
Q Consensus 124 d~~lmk~~i~~L~~---~~~s~---e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~-----s~~~~ir~~Aa~v 192 (397)
...+..+.+.++-. +..++ ..-.+||--|+-.+...|....|.+..-=--+-.+|+ .+.+-+|-.+..+
T Consensus 69 ~~~LLqEivaiYp~l~p~~l~~~qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGV 148 (293)
T KOG3036|consen 69 MVALLQEIVAIYPSLSPPTLTPAQSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGV 148 (293)
T ss_pred HHHHHHHHHhcccccCCCCCCccccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHH
Confidence 45666776666422 21221 2345788888888888999999998754333335653 3568899999999
Q ss_pred HHHHhcCCh-HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh------cHHHHHhcC-cHHHHH-Hhhc
Q 015951 193 LGKASQNNP-LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA------GQEMFYVEA-GDLMLQ-DILG 263 (397)
Q Consensus 193 Lg~~aqNNp-~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~------~~~~f~~~g-Gi~~L~-~lL~ 263 (397)
||.+++|.. ++-...+..+.+|..++.+..+++.-+.-|++-+.-++-+... ..+.|..-+ -+.-++ ++.+
T Consensus 149 IgaLvk~dd~eVi~fLl~TeIVPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~ 228 (293)
T KOG3036|consen 149 IGALVKNDDQEVIRFLLTTEIVPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVS 228 (293)
T ss_pred HHHHHhcCcHHHHHHHHHhhhHHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhc
Confidence 999999865 4556666789999999999999988888999999888766543 223343221 222222 2223
Q ss_pred CCCccHHHHHHHHHHHHHHhh
Q 015951 264 NSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 264 s~~~d~klr~kA~~lL~~L~~ 284 (397)
.+ +.++-..++.+...|+.
T Consensus 229 ~p--s~RllKhviRcYlrLsd 247 (293)
T KOG3036|consen 229 MP--SPRLLKHVIRCYLRLSD 247 (293)
T ss_pred CC--CHHHHHHHHHHHHHhcC
Confidence 33 56777777777777764
No 126
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=94.10 E-value=1.6 Score=43.88 Aligned_cols=171 Identities=15% Similarity=0.136 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHhccCCCC-ch----hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHH-
Q 015951 143 EDSQRALQELLILVEPID-NA----NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL- 216 (397)
Q Consensus 143 e~k~~AL~~L~~Lve~iD-nA----~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~L- 216 (397)
-.|.-++..+-.++|+-| |+ ...+..|-++.++.|+-.++.++-..|...|..++- .|..-+.+++...+..+
T Consensus 97 sVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaaleaiFeSellDdlh 175 (524)
T KOG4413|consen 97 SVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAALEAIFESELLDDLH 175 (524)
T ss_pred hhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHHHHHhcccccCChHH
Confidence 357778888888899888 33 234456778888899999999999999999999985 57777888877766443
Q ss_pred -HHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc
Q 015951 217 -MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 295 (397)
Q Consensus 217 -l~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~ 295 (397)
..+....++-+|...+.-|--+..-+|......-..|-+..|..=|+... |.-++..+.-+++.|+. .+.-+
T Consensus 176 lrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGte-DtLVianciElvteLae------teHgr 248 (524)
T KOG4413|consen 176 LRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTE-DTLVIANCIELVTELAE------TEHGR 248 (524)
T ss_pred HhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCc-ceeehhhHHHHHHHHHH------Hhhhh
Confidence 33333334445555555444444445666777777888888888888643 55688899999999985 23456
Q ss_pred hhHHhCCcHHHHHHhccCCChHHHHH
Q 015951 296 PLFRDRFFLKSVVDLTASADLDLQEK 321 (397)
Q Consensus 296 ~~l~~~g~v~~Lv~lL~~~d~dv~E~ 321 (397)
+++-+.|+++.+.+.+...|.+-.|+
T Consensus 249 eflaQeglIdlicnIIsGadsdPfek 274 (524)
T KOG4413|consen 249 EFLAQEGLIDLICNIISGADSDPFEK 274 (524)
T ss_pred hhcchhhHHHHHHHHhhCCCCCcHHH
Confidence 77888999999998887665554444
No 127
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=94.09 E-value=1.7 Score=44.57 Aligned_cols=83 Identities=14% Similarity=0.118 Sum_probs=68.8
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc-CC---CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015951 182 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 257 (397)
Q Consensus 182 ~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~-s~---~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 257 (397)
-+.|=..|+.++.....|.|.+-..+.+.|.++.+++-+. .. +.++-..--.+|++++= |..+.+.|.+.+-+..
T Consensus 122 G~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL-N~~Gl~~~~~~~~l~~ 200 (379)
T PF06025_consen 122 GPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL-NNRGLEKVKSSNPLDK 200 (379)
T ss_pred chHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc-CHHHHHHHHhcChHHH
Confidence 4789999999999999999999999999999999999888 33 24555555566676665 4577899999999999
Q ss_pred HHHhhcCC
Q 015951 258 LQDILGNS 265 (397)
Q Consensus 258 L~~lL~s~ 265 (397)
+.+++.++
T Consensus 201 ~f~if~s~ 208 (379)
T PF06025_consen 201 LFEIFTSP 208 (379)
T ss_pred HHHHhCCH
Confidence 99998875
No 128
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=94.06 E-value=0.83 Score=45.62 Aligned_cols=169 Identities=15% Similarity=0.139 Sum_probs=105.2
Q ss_pred CCCCchhHHHhc-CCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChH-HHHHHHHcCcHHHHHHhhcCCC--HHHHHHH
Q 015951 157 EPIDNANDLSKL-GGLSVLVGQLNH-PDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSSF--VEEAVKA 231 (397)
Q Consensus 157 e~iDnA~~~~~l-GGl~~Li~lL~s-~~~~ir~~Aa~vLg~~aqNNp~-~Q~~vl~~g~lp~Ll~LL~s~~--~~v~~kA 231 (397)
-+...|.++.++ ..+-.|+.+.+. ....|-...+.++.+++..-|+ .-...+-.|-+.+-++.|.... ++.-+.-
T Consensus 222 f~~~~aqdi~K~~dli~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~d 301 (432)
T COG5231 222 FSKECAQDIDKMDDLINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVID 301 (432)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHH
Confidence 345566666665 445666677655 4567777888888888864332 2222233344555566665321 2211111
Q ss_pred HHHHH----------------------HHhcCCh---------hcHHHHHhc--CcHHHHHHhhcCCCccHHHHHHHHHH
Q 015951 232 LYTVS----------------------SLIRNNL---------AGQEMFYVE--AGDLMLQDILGNSSFEIRLHRKAVSL 278 (397)
Q Consensus 232 l~ALS----------------------~LiR~~~---------~~~~~f~~~--gGi~~L~~lL~s~~~d~klr~kA~~l 278 (397)
+.-|- .+..-+| .+.+.|.+. .-+..|.+++++..++. ...-|+.=
T Consensus 302 i~~i~s~l~~~~k~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt-~i~vAc~D 380 (432)
T COG5231 302 IERIRSRLVQNTKKLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNT-WICVACSD 380 (432)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCc-eEeeeHhh
Confidence 11111 1111122 255666653 36778888888764442 23346666
Q ss_pred HHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951 279 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 279 L~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 331 (397)
|..+.. ..|+.+..+.+.|+-+.++++++++|++++-.|+.|+..+..
T Consensus 381 i~~~Vr-----~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~ 428 (432)
T COG5231 381 IFQLVR-----ASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTCIS 428 (432)
T ss_pred HHHHHH-----hCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence 666664 578899999999999999999999999999999999998875
No 129
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=93.88 E-value=0.18 Score=45.57 Aligned_cols=104 Identities=22% Similarity=0.282 Sum_probs=72.6
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHhcc--CCCCchhHHHhcCCHHHHHHhcCC---------CCHHHHHHHHHHHHHHhcC
Q 015951 131 AIDDLNNSTLSLEDSQRALQELLILV--EPIDNANDLSKLGGLSVLVGQLNH---------PDTDIRKISAWILGKASQN 199 (397)
Q Consensus 131 ~i~~L~~~~~s~e~k~~AL~~L~~Lv--e~iDnA~~~~~lGGl~~Li~lL~s---------~~~~ir~~Aa~vLg~~aqN 199 (397)
.++.+.+...+. ..|..|+-.+ .+++....|+..||+..|+.+|.. .+..+...+..|+-+++ |
T Consensus 71 ~i~~L~~~~~~~----~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~-n 145 (187)
T PF06371_consen 71 YIKKLKSRPSTS----KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALM-N 145 (187)
T ss_dssp HHHHHTTT--HH----HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHT-S
T ss_pred HHHHHHccCccH----HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHH-c
Confidence 445554443222 3344444433 456778899999999999988753 34578999999999988 5
Q ss_pred ChHHHHHHHH-cCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015951 200 NPLVQKQVLE-LGALSKLMKMVKSSFVEEAVKALYTVSSLI 239 (397)
Q Consensus 200 Np~~Q~~vl~-~g~lp~Ll~LL~s~~~~v~~kAl~ALS~Li 239 (397)
++.-...++. .+++..|+..|.+.+..++.-++.-|+.++
T Consensus 146 ~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 146 TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 6665666664 688999999999988999999988888775
No 130
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.79 E-value=6 Score=43.85 Aligned_cols=184 Identities=16% Similarity=0.115 Sum_probs=107.3
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHhcCCH---------------HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951 142 LEDSQRALQELLILVEPIDNANDLSKLGGL---------------SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 206 (397)
Q Consensus 142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl---------------~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~ 206 (397)
..-++-|...|..++-+-||=-..+.+.++ ..+++||+.+++.||..|...+-.++..+- ++
T Consensus 308 ~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N-v~-- 384 (866)
T KOG1062|consen 308 SGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN-VR-- 384 (866)
T ss_pred chHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc-HH--
Confidence 355666777777777666654333433333 356789999999999999999998884321 22
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH--------------hcCcHHHHHHhhcCC-------
Q 015951 207 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--------------VEAGDLMLQDILGNS------- 265 (397)
Q Consensus 207 vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~--------------~~gGi~~L~~lL~s~------- 265 (397)
..+..|+..|.+.++..+....+-|.-++..|.|....|+ ....+.-+++++.+.
T Consensus 385 ----~mv~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y 460 (866)
T KOG1062|consen 385 ----VMVKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEY 460 (866)
T ss_pred ----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhH
Confidence 2456788888887778888888888888777766544442 122445555555432
Q ss_pred ----------------CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHH
Q 015951 266 ----------------SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIK 327 (397)
Q Consensus 266 ----------------~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~ 327 (397)
-....+..-|.|+|.---.--+...+.+....+.+..++..+-+++.+. +..++--|+.||.
T Consensus 461 ~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~ 540 (866)
T KOG1062|consen 461 AVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALL 540 (866)
T ss_pred HHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 1122344445555542210000011112222233445666666666543 5667777777777
Q ss_pred HHhcC
Q 015951 328 NLLQL 332 (397)
Q Consensus 328 ~L~~~ 332 (397)
.|..-
T Consensus 541 KLSsr 545 (866)
T KOG1062|consen 541 KLSSR 545 (866)
T ss_pred HHHhh
Confidence 76643
No 131
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=93.69 E-value=1.2 Score=39.34 Aligned_cols=73 Identities=14% Similarity=0.149 Sum_probs=59.2
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC
Q 015951 170 GLSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN 242 (397)
Q Consensus 170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~ 242 (397)
++..|..-|++.++.++..|..+|-.+++|. +..+..+...+.+..|+++++. .+..|+.+++..|-+-...+
T Consensus 42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f 116 (142)
T cd03569 42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAF 116 (142)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHh
Confidence 3444556678899999999999999999995 6688889999999999999985 34678989888887765443
No 132
>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []. It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.
Probab=93.50 E-value=0.61 Score=48.78 Aligned_cols=125 Identities=18% Similarity=0.125 Sum_probs=93.0
Q ss_pred HHHHHHHhcCChhcHHHHHhcCcHHHHHHhh--------cCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCc
Q 015951 232 LYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL--------GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF 303 (397)
Q Consensus 232 l~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL--------~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~ 303 (397)
|-+|--+.|+ +.+...++...|+..|..+- .....+..+...|..+|+|++.. ++..+..+.+.|+
T Consensus 2 L~~LRiLsRd-~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~-----s~~aR~~~~~~~~ 75 (446)
T PF10165_consen 2 LETLRILSRD-PTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFL-----SPSARQIFVDLGL 75 (446)
T ss_pred HHHHHHHccC-cccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhC-----CHHHHHHHHHcCc
Confidence 3445555554 44566666667777777665 12224677999999999999973 6788899999999
Q ss_pred HHHHHHhccCC-----ChHHHHHHHHHHHHHhcCChHHHHHHHhc-CChHHHHHHHHHHhHHhhh
Q 015951 304 LKSVVDLTASA-----DLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQLQEVML 362 (397)
Q Consensus 304 v~~Lv~lL~~~-----d~dv~E~aL~aL~~L~~~~~~~r~~~~~~-~gL~~~L~~Lr~~~~~l~~ 362 (397)
.+.++..|+.. +.++.--.++.|.=+.......+..+.+. +|++.+.+.|..++.....
T Consensus 76 ~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~ 140 (446)
T PF10165_consen 76 AEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSK 140 (446)
T ss_pred HHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccc
Confidence 99999999876 67888888888877777777778777655 6677788888888776543
No 133
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=93.48 E-value=1.2 Score=41.12 Aligned_cols=142 Identities=14% Similarity=0.077 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHHhcC-ChHHH----HHHH------HcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015951 184 DIRKISAWILGKASQN-NPLVQ----KQVL------ELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 251 (397)
Q Consensus 184 ~ir~~Aa~vLg~~aqN-Np~~Q----~~vl------~~g~lp~Ll~L-L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~ 251 (397)
.||..|..+|++++++ +++.= -.++ ..+.-+.|+.+ +.+.+..+|..|+.+++.|+.+..+....--+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3799999999999998 33211 0111 11234445544 44556789999999999999886442222211
Q ss_pred cC-------------------cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHH----H
Q 015951 252 EA-------------------GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV----V 308 (397)
Q Consensus 252 ~g-------------------Gi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~L----v 308 (397)
.. -...|...|...+ +..+......++..|+.. ....... .|++..+ -
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~-~~~~l~q~lK~la~Lv~~---tPY~rL~-----~~ll~~~v~~v~ 151 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAEK-SPPVLTQLLKCLAVLVQA---TPYHRLP-----PGLLTEVVTQVR 151 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc-ccHHHHHHHHHHHHHHcc---CChhhcC-----HhHHHHHHHHHH
Confidence 11 2234555566543 334666777777777752 1111222 3444444 4
Q ss_pred HhccCCChHHHHHHHHHHHHHhcCCh
Q 015951 309 DLTASADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 309 ~lL~~~d~dv~E~aL~aL~~L~~~~~ 334 (397)
.++.+.|++++..++.++..+.+..+
T Consensus 152 ~~l~~~d~~v~v~~l~~~~~l~s~~~ 177 (182)
T PF13251_consen 152 PLLRHRDPNVRVAALSCLGALLSVQP 177 (182)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHcCCC
Confidence 46677899999999999999987654
No 134
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=93.48 E-value=0.36 Score=37.80 Aligned_cols=63 Identities=17% Similarity=0.310 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHH
Q 015951 186 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFY 250 (397)
Q Consensus 186 r~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~ 250 (397)
...|.|++|+++.. |.-...+.+.+.++.++++..+.+ -.+|--|.|+|+=+.+ ...+.+.+.
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~ 67 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILD 67 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHH
Confidence 46899999999975 545555667899999999999765 5789999999997765 445444443
No 135
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=93.13 E-value=1.4 Score=38.93 Aligned_cols=71 Identities=15% Similarity=0.156 Sum_probs=58.5
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCCh
Q 015951 173 VLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNL 243 (397)
Q Consensus 173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp-~~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~ 243 (397)
.|..=|.+.++.++..|..+|-++++|+. .++..|.....+..|++++.. .+..|+.+.+.-|-.-...++
T Consensus 41 al~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 41 AIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 34455678899999999999999999976 488888888999999999998 567899998888877655443
No 136
>KOG2734 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.06 E-value=0.91 Score=47.01 Aligned_cols=130 Identities=19% Similarity=0.205 Sum_probs=91.2
Q ss_pred CChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch-hccCC---CCcchhHHhCCcHHHHHHhccCC--
Q 015951 241 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ-LENMH---KVEPPLFRDRFFLKSVVDLTASA-- 314 (397)
Q Consensus 241 ~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~-l~~~~---~~~~~~l~~~g~v~~Lv~lL~~~-- 314 (397)
..|.-..-|++.+|++.|+.+|...++|+ -..++.++..|.... +..+. ....+.+++.+++..|++-+..-
T Consensus 113 t~PdLYp~lveln~V~slL~LLgHeNtDI--~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdE 190 (536)
T KOG2734|consen 113 TMPDLYPILVELNAVQSLLELLGHENTDI--AIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDE 190 (536)
T ss_pred cChHHHHHHHHhccHHHHHHHhcCCCchh--HHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhh
Confidence 45777789999999999999999887774 557888888887542 11112 24677889999999999887543
Q ss_pred ----ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHhhhhhhhhhhHHhHHHH
Q 015951 315 ----DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEAL 376 (397)
Q Consensus 315 ----d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l~~~e~~~~~~~~l~~~ 376 (397)
+.+-...++..+.+++...+...+.+.+. |+. .-|-.++..-.+++--+.||.++-++
T Consensus 191 svkeea~gv~~~L~vveNlv~~r~~~~~~~~e~-~ll---~WLL~rl~~k~~f~aNk~YasEiLai 252 (536)
T KOG2734|consen 191 SVKEEADGVHNTLAVVENLVEVRPAICTEIVEQ-GLL---SWLLKRLKGKAAFDANKQYASEILAI 252 (536)
T ss_pred cchhhhhhhHHHHHHHHHHHhccHHHHHHHHHh-hHH---HHHHHHHhcccCcchhHHHHHHHHHH
Confidence 44566777888899998876655555534 552 22333345555677788899887444
No 137
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.96 E-value=4.3 Score=44.78 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=93.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHH---------------HHHHHHHHHHhccCCCCc-hhHHHhcCCHHH-H
Q 015951 112 IKELMEKLKTPSDAQLIQIAIDDLNNSTLSLE---------------DSQRALQELLILVEPIDN-ANDLSKLGGLSV-L 174 (397)
Q Consensus 112 L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e---------------~k~~AL~~L~~Lve~iDn-A~~~~~lGGl~~-L 174 (397)
+++++++=....-.+.||+.|..+-|++.-+. +....|--.-++|...++ ...++.|=.+-- +
T Consensus 25 ik~~Lek~~~~~KIeamK~ii~~mlnGe~~p~Llm~IiRfvlps~~~elKKLly~ywE~vPKt~~dgkl~~EMILvcna~ 104 (948)
T KOG1058|consen 25 IKEKLEKGDDEVKIEAMKKIIALMLNGEDLPSLLMTIIRFVLPSRNHELKKLLYYYWELVPKTDSDGKLLHEMILVCNAY 104 (948)
T ss_pred HHHHHhcCChHHHHHHHHHHHHHHHcCCCchHHHHHHhheeeccCchHHHHHHHHHHHHccccCCCcccHHHHHHHHHHH
Confidence 45566542223345678888877777764332 222334444456665554 555665533322 2
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc
Q 015951 175 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 254 (397)
Q Consensus 175 i~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gG 254 (397)
-.-|.|||+=||-...+.|+++= .|+. -...+|.+.+.|.+...=||+.|+.||.+|-+++.. .=-.+
T Consensus 105 RkDLQHPNEyiRG~TLRFLckLk--E~EL-----lepl~p~IracleHrhsYVRrNAilaifsIyk~~~~-----L~pDa 172 (948)
T KOG1058|consen 105 RKDLQHPNEYIRGSTLRFLCKLK--EPEL-----LEPLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH-----LIPDA 172 (948)
T ss_pred hhhccCchHhhcchhhhhhhhcC--cHHH-----hhhhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh-----hcCCh
Confidence 24688999999999999988773 3332 235688899999998888999999999998766321 11244
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHH
Q 015951 255 DLMLQDILGNSSFEIRLHRKAVSL 278 (397)
Q Consensus 255 i~~L~~lL~s~~~d~klr~kA~~l 278 (397)
-+++-+.|.... |+..+++|.-.
T Consensus 173 peLi~~fL~~e~-DpsCkRNAFi~ 195 (948)
T KOG1058|consen 173 PELIESFLLTEQ-DPSCKRNAFLM 195 (948)
T ss_pred HHHHHHHHHhcc-CchhHHHHHHH
Confidence 555555554332 33455555443
No 138
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=92.90 E-value=8.2 Score=37.69 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=23.7
Q ss_pred CHHHHHHhc--CCCCHHHHHHHHHHHHHHhc
Q 015951 170 GLSVLVGQL--NHPDTDIRKISAWILGKASQ 198 (397)
Q Consensus 170 Gl~~Li~lL--~s~~~~ir~~Aa~vLg~~aq 198 (397)
.++.++..| .+..|-||-.|+.++|.+..
T Consensus 68 Av~~l~~vl~desq~pmvRhEAaealga~~~ 98 (289)
T KOG0567|consen 68 AVPVLVEVLLDESQEPMVRHEAAEALGAIGD 98 (289)
T ss_pred hhHHHHHHhcccccchHHHHHHHHHHHhhcc
Confidence 678888766 45678999999999999873
No 139
>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.
Probab=92.80 E-value=0.47 Score=45.51 Aligned_cols=54 Identities=17% Similarity=0.241 Sum_probs=43.2
Q ss_pred HHHHHhc-CCCCHHHHHHHHHHHHHHhcCChH-HHHHHHHcCcHHHHHHhhcCCCH
Q 015951 172 SVLVGQL-NHPDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSSFV 225 (397)
Q Consensus 172 ~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~-~Q~~vl~~g~lp~Ll~LL~s~~~ 225 (397)
..|+++| ...++-.|+-|.-+|.++|+.... ++....+.+.|..|+..+.+...
T Consensus 175 ~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~ 230 (257)
T PF12031_consen 175 HTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQ 230 (257)
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence 3456666 457899999999999999997665 45667788999999999987543
No 140
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=92.77 E-value=0.46 Score=42.49 Aligned_cols=147 Identities=13% Similarity=0.157 Sum_probs=96.6
Q ss_pred CHHHHHHhcC--CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH
Q 015951 170 GLSVLVGQLN--HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 247 (397)
Q Consensus 170 Gl~~Li~lL~--s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~ 247 (397)
.+..++..|. ...+++|..|.-++...- +..++.+.+. .-..+-.++.....+-...++.+++.+.-..|....
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~~~-~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~ 79 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFKEK-ISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGS 79 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHHHH-HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHH
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHHHH-HHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHH
Confidence 3456676654 578899999999999984 4455555442 233333444433334578899999999877776655
Q ss_pred HHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChH-HHHHHHH
Q 015951 248 MFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLD-LQEKALA 324 (397)
Q Consensus 248 ~f~~-~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~d-v~E~aL~ 324 (397)
.++. .|-.+.+.........+..++..++.+++.=|. +...+..+.++ +++.|-++.+.. |.. ++..|+-
T Consensus 80 ~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~------d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v 152 (157)
T PF11701_consen 80 ELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI------DKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAV 152 (157)
T ss_dssp HHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT------SHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHH
T ss_pred HHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc------cHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHH
Confidence 5554 555677777777333477899999999998774 44556555554 478888888644 444 6777765
Q ss_pred HHH
Q 015951 325 AIK 327 (397)
Q Consensus 325 aL~ 327 (397)
+|.
T Consensus 153 ~L~ 155 (157)
T PF11701_consen 153 GLC 155 (157)
T ss_dssp HHH
T ss_pred HHh
Confidence 554
No 141
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=92.73 E-value=9.4 Score=40.03 Aligned_cols=190 Identities=15% Similarity=0.094 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh-ccCCCCchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCCh
Q 015951 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLI-LVEPIDNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNNP 201 (397)
Q Consensus 124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~-Lve~iDnA~~~~~lGGl~~Li~lL~s-~~~~ir~~Aa~vLg~~aqNNp 201 (397)
-..+++..+..+++.+. .+.+..|+.+|.. ++++--.-+.=+...-+..+++.|.. .++.+|..|.++|+.++.|-|
T Consensus 284 ~~~~v~~~l~~~~g~e~-a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~ 362 (516)
T KOG2956|consen 284 QSALVADLLKEISGSER-ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP 362 (516)
T ss_pred hhHHHHHHHHhccCccc-hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhch
Confidence 45678888888887753 3667788876665 44553333332222234566677854 889999999999999998755
Q ss_pred HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc-CChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015951 202 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR-NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 280 (397)
Q Consensus 202 ~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR-~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~ 280 (397)
.--..-.+ =++.++++--.+..+++-..|.-+.+-++. +.|... +..+..++.+. |...-.-++..+.
T Consensus 363 ~~l~DstE-~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~--D~~~~~~~iKm~T 431 (516)
T KOG2956|consen 363 ARLFDSTE-IAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA--DEPRAVAVIKMLT 431 (516)
T ss_pred HhhhchHH-HHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC--cchHHHHHHHHHH
Confidence 32222122 267777777777666664444444443333 344322 22334444442 2223333444555
Q ss_pred HHhhchhccCCCCcchhHH--hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 281 DLAKCQLENMHKVEPPLFR--DRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 281 ~L~~~~l~~~~~~~~~~l~--~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
-|+.. -..+.+. =..+.+.+++.-.+....||..|..||..+...
T Consensus 432 kl~e~-------l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLVamv~~ 478 (516)
T KOG2956|consen 432 KLFER-------LSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR 478 (516)
T ss_pred HHHhh-------cCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence 66532 1111121 135677788888888899999999999988853
No 142
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.68 E-value=4.3 Score=43.42 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=81.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHH
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMF 249 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~-~~~~f 249 (397)
+..+..+|.++..+-|..+..-|..+-.+.| .|-.+.....++.|++-|++.+++|-.+++.-+++++.++.. +.
T Consensus 338 i~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~~~--- 413 (675)
T KOG0212|consen 338 IEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSPNL--- 413 (675)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccccH---
Confidence 5566688999999999999999999987666 777777888999999999999999999999999999986432 23
Q ss_pred HhcCcHHHHHHhh---cCCCccHHHHHHHHHHHHHHhh
Q 015951 250 YVEAGDLMLQDIL---GNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 250 ~~~gGi~~L~~lL---~s~~~d~klr~kA~~lL~~L~~ 284 (397)
.+.+..+| ..+ ..-+..++.+.+..||.
T Consensus 414 -----~~fl~sLL~~f~e~--~~~l~~Rg~lIIRqlC~ 444 (675)
T KOG0212|consen 414 -----RKFLLSLLEMFKED--TKLLEVRGNLIIRQLCL 444 (675)
T ss_pred -----HHHHHHHHHHHhhh--hHHHHhhhhHHHHHHHH
Confidence 33344443 333 34478899999999985
No 143
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=92.65 E-value=1.5 Score=38.68 Aligned_cols=72 Identities=15% Similarity=0.153 Sum_probs=57.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 242 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s------~~~~v~~kAl~ALS~LiR~~ 242 (397)
+..+..-|+++++.++..|..+|-++++|. +.++..|...+.+..|+++++. .+..|+.+.+.-|-.-...+
T Consensus 40 ~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (139)
T cd03567 40 VRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL 118 (139)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 344556678999999999999999999997 5688999999999999999963 34678888877666554433
No 144
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.51 E-value=2 Score=46.94 Aligned_cols=130 Identities=20% Similarity=0.215 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc
Q 015951 142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 221 (397)
Q Consensus 142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~ 221 (397)
++.-+.-+-.+-.-.++.|.-++|+. |-+.-++....+++..||.+.+.+|+.+.-+|...-+.+.+ +...+++.-+.
T Consensus 59 ~dRIl~fla~fv~sl~q~d~e~DlV~-~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~ 136 (892)
T KOG2025|consen 59 PDRILSFLARFVESLPQLDKEEDLVA-GTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLK 136 (892)
T ss_pred HHHHHHHHHHHHHhhhccCchhhHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHh
Confidence 34333445555555668888888764 67778888889999999999999999999877655555554 56677776666
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015951 222 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 279 (397)
Q Consensus 222 s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL 279 (397)
+-.+.||..|+.|||-+= +.|. -. +......+..+++.+. +..+|+-|+..|
T Consensus 137 Drep~VRiqAv~aLsrlQ-~d~~-de---e~~v~n~l~~liqnDp-S~EVRRaaLsnI 188 (892)
T KOG2025|consen 137 DREPNVRIQAVLALSRLQ-GDPK-DE---ECPVVNLLKDLIQNDP-SDEVRRAALSNI 188 (892)
T ss_pred ccCchHHHHHHHHHHHHh-cCCC-CC---cccHHHHHHHHHhcCC-cHHHHHHHHHhh
Confidence 667789999999999874 2222 11 1345667777887653 455787665544
No 145
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.31 E-value=4 Score=44.74 Aligned_cols=94 Identities=21% Similarity=0.197 Sum_probs=76.4
Q ss_pred HHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC
Q 015951 145 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF 224 (397)
Q Consensus 145 k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~ 224 (397)
--.||.-|.-++. .|-|+|+. +-++.+|+|+-|=+|..|.-++-.++---|+.-. -++|+|..-|.+++
T Consensus 126 ~giAL~GLS~fvT-pdLARDLa-----~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr-----~~FprL~EkLeDpD 194 (877)
T KOG1059|consen 126 VGLALSGLSCIVT-PDLARDLA-----DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALR-----PCFPRLVEKLEDPD 194 (877)
T ss_pred hhheecccccccC-chhhHHHH-----HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHh-----hhHHHHHHhccCCC
Confidence 3357777776665 78888876 4678899999999999999999988865554322 47999999999999
Q ss_pred HHHHHHHHHHHHHHhcCChhcHHHH
Q 015951 225 VEEAVKALYTVSSLIRNNLAGQEMF 249 (397)
Q Consensus 225 ~~v~~kAl~ALS~LiR~~~~~~~~f 249 (397)
+.|+..|+.-|+-+.|.+|.+.-.+
T Consensus 195 p~V~SAAV~VICELArKnPknyL~L 219 (877)
T KOG1059|consen 195 PSVVSAAVSVICELARKNPQNYLQL 219 (877)
T ss_pred chHHHHHHHHHHHHHhhCCcccccc
Confidence 9999999999999999999876543
No 146
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=91.46 E-value=4.5 Score=45.40 Aligned_cols=172 Identities=16% Similarity=0.218 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHh--cCCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHH
Q 015951 142 LEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK 218 (397)
Q Consensus 142 ~e~k~~AL~~L~~Lve~iDnA~~~~~--lGGl~~Li~l-L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~ 218 (397)
-.+|..||+.+-..+++-- ....+ .|-+-.++.. +...|..+...|+.+|..++......-.. +-.+.+|.|+.
T Consensus 267 WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~-~~~~v~p~lld 343 (815)
T KOG1820|consen 267 WKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRK-YAKNVFPSLLD 343 (815)
T ss_pred hHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHH-HHHhhcchHHH
Confidence 3577788888887766533 11111 1233444443 36688999999999999999876554222 22368899999
Q ss_pred hhcCCCHHHH---HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc
Q 015951 219 MVKSSFVEEA---VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 295 (397)
Q Consensus 219 LL~s~~~~v~---~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~ 295 (397)
-+......++ ++++-++++.. +. ..-.+.+...++++ .++++.....++...... .++...
T Consensus 344 ~lkekk~~l~d~l~~~~d~~~ns~---~l-------~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~~~----~~~~~~ 407 (815)
T KOG1820|consen 344 RLKEKKSELRDALLKALDAILNST---PL-------SKMSEAILEALKGK--NPQIKGECLLLLDRKLRK----LGPKTV 407 (815)
T ss_pred HhhhccHHHHHHHHHHHHHHHhcc---cH-------HHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhh----cCCcCc
Confidence 9887665554 56666666621 11 11234556677776 456777766666665542 233333
Q ss_pred hhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 296 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 296 ~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
+.-.-.++++.++.+.+..+.+||..|+.++..+...
T Consensus 408 ~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~ 444 (815)
T KOG1820|consen 408 EKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKV 444 (815)
T ss_pred chhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHH
Confidence 3334467888888888888999999999999988854
No 147
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=91.36 E-value=6.8 Score=45.34 Aligned_cols=199 Identities=18% Similarity=0.150 Sum_probs=117.8
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC----ChH
Q 015951 127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN----NPL 202 (397)
Q Consensus 127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqN----Np~ 202 (397)
++-.+|+-++. .+.|..||+-|..|...+|--..+. -.+|-++.++..+.+.||+.|...|..+..+ +|.
T Consensus 426 ~lts~IR~lk~----~~tK~~ALeLl~~lS~~i~de~~LD--RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 426 VLTSCIRALKT----IQTKLAALELLQELSTYIDDEVKLD--RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred HHHHHHHhhhc----chhHHHHHHHHHHHhhhcchHHHHh--hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 34445555543 4789999998888888777555544 3688899999999999999999998887654 333
Q ss_pred HHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHH-------------h-----cCChhcH---HHHHh------cCc
Q 015951 203 VQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSL-------------I-----RNNLAGQ---EMFYV------EAG 254 (397)
Q Consensus 203 ~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~L-------------i-----R~~~~~~---~~f~~------~gG 254 (397)
--..|.++ .+|.|-.|+.+.+ .-+|..-...|+-+ . -+.|.+. ..-.+ ..+
T Consensus 500 daniF~eY-lfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~ 578 (1431)
T KOG1240|consen 500 DANIFPEY-LFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHT 578 (1431)
T ss_pred cchhhHhh-hhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHH
Confidence 33445555 7899999988743 22332211111111 1 1222220 00000 123
Q ss_pred HH-HHHHhhcCCCccHHHHHHHHHHHHHHhhchh-ccCC---------------CCcchhH---------------HhCC
Q 015951 255 DL-MLQDILGNSSFEIRLHRKAVSLVGDLAKCQL-ENMH---------------KVEPPLF---------------RDRF 302 (397)
Q Consensus 255 i~-~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l-~~~~---------------~~~~~~l---------------~~~g 302 (397)
++ ....+|.++ +.-+|+--+.-|.-||.--. +..+ ..++..| .+++
T Consensus 579 V~~~v~sLlsd~--~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~rs~sey 656 (1431)
T KOG1240|consen 579 VEQMVSSLLSDS--PPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSEY 656 (1431)
T ss_pred HHHHHHHHHcCC--chHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEEeeeeHHHH
Confidence 33 333444443 33466655555665654211 1111 1122221 3567
Q ss_pred cHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951 303 FLKSVVDLTASADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 303 ~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 334 (397)
+++.|.+-|....+-|..+||.+|..|.+.+-
T Consensus 657 llPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 657 LLPLLQQGLTDGEEAVIVSALGSLSILIKLGL 688 (1431)
T ss_pred HHHHHHHhccCcchhhHHHHHHHHHHHHHhcc
Confidence 77888888888889999999999999987653
No 148
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.24 E-value=5.7 Score=43.86 Aligned_cols=30 Identities=13% Similarity=0.142 Sum_probs=24.7
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015951 170 GLSVLVGQLNHPDTDIRKISAWILGKASQN 199 (397)
Q Consensus 170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqN 199 (397)
.+|.+..+|+|.++=||.+|.-+|+++-+|
T Consensus 135 l~p~IracleHrhsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 135 LMPSIRACLEHRHSYVRRNAILAIFSIYKN 164 (948)
T ss_pred hHHHHHHHHhCcchhhhhhhheeehhHHhh
Confidence 345555789999999999999999999887
No 149
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=91.15 E-value=5.2 Score=42.72 Aligned_cols=158 Identities=16% Similarity=0.147 Sum_probs=109.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCC----HHHHHHHHHHHHHHh
Q 015951 122 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD----TDIRKISAWILGKAS 197 (397)
Q Consensus 122 ~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~----~~ir~~Aa~vLg~~a 197 (397)
-++....+.+++++.++. ...+..|+..|..+--+...|..|+++.|+..|..+..+.. .++..........+.
T Consensus 79 ~sp~~~a~~i~e~l~~~~--~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elm 156 (713)
T KOG2999|consen 79 ASPSHYAKRIMEILTEGN--NISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELM 156 (713)
T ss_pred cCchHHHHHHHHHHhCCC--cHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHH
Confidence 355677899999998874 56777799999999999999999999999999999987643 455555555544443
Q ss_pred cCChHHHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015951 198 QNNPLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 275 (397)
Q Consensus 198 qNNp~~Q~~vl~~g~lp~Ll~LL~s~--~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA 275 (397)
...-...+.+ ...++-....+.+-. +..+-..|+.-+-+++-+.+.-.+.+.+.--++-|+..++.. +.+++..|
T Consensus 157 ehgvvsW~~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~--n~~i~~~a 233 (713)
T KOG2999|consen 157 EHGVVSWESV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS--NQRIQTCA 233 (713)
T ss_pred hhceeeeeec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc--chHHHHHH
Confidence 2211111111 112333344444221 223456677777788877776677777788888888888865 66789999
Q ss_pred HHHHHHHhh
Q 015951 276 VSLVGDLAK 284 (397)
Q Consensus 276 ~~lL~~L~~ 284 (397)
..++..|..
T Consensus 234 ial~nal~~ 242 (713)
T KOG2999|consen 234 IALLNALFR 242 (713)
T ss_pred HHHHHHHHh
Confidence 999999976
No 150
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=90.96 E-value=4.4 Score=43.41 Aligned_cols=146 Identities=14% Similarity=0.120 Sum_probs=101.3
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951 170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 249 (397)
Q Consensus 170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f 249 (397)
-+..++.-+..+.+.+|.....|+....-+ .+..-.+ -.++.+.+++.+.+...+.+|.|++..+++++. ...+
T Consensus 97 ~~~~~~~~~~tps~~~q~~~~~~l~~~~~~---~~~~~~~-~~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~--i~~~ 170 (569)
T KOG1242|consen 97 IIEILLEELDTPSKSVQRAVSTCLPPLVVL---SKGLSGE-YVLELLLELLTSTKIAERAGAAYGLAGLVNGLG--IESL 170 (569)
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHhhhHHHH---hhccCHH-HHHHHHHHHhccccHHHHhhhhHHHHHHHcCcH--Hhhh
Confidence 456777788889999999999999888743 2221111 367888999998888889999999999998865 4677
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHH-HHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc---CCChHHHHHHHHH
Q 015951 250 YVEAGDLMLQDILGNSSFEIRLHRK-AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---SADLDLQEKALAA 325 (397)
Q Consensus 250 ~~~gGi~~L~~lL~s~~~d~klr~k-A~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~---~~d~dv~E~aL~a 325 (397)
.+.+-+..|....++.+. ..++. +.++.-..+.+ .++. .+..+++.+..++. +....+|+.|..|
T Consensus 171 ~~~~~l~~l~~ai~dk~~--~~~re~~~~a~~~~~~~----Lg~~-----~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a 239 (569)
T KOG1242|consen 171 KEFGFLDNLSKAIIDKKS--ALNREAALLAFEAAQGN----LGPP-----FEPYIVPILPSILTNFGDKINKVREAAVEA 239 (569)
T ss_pred hhhhHHHHHHHHhcccch--hhcHHHHHHHHHHHHHh----cCCC-----CCchHHhhHHHHHHHhhccchhhhHHHHHH
Confidence 777888888888887632 34443 44444344331 2333 34445555555544 4577899999888
Q ss_pred HHHHhcC
Q 015951 326 IKNLLQL 332 (397)
Q Consensus 326 L~~L~~~ 332 (397)
..++...
T Consensus 240 ~kai~~~ 246 (569)
T KOG1242|consen 240 AKAIMRC 246 (569)
T ss_pred HHHHHHh
Confidence 8887765
No 151
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.92 E-value=4.5 Score=44.30 Aligned_cols=43 Identities=19% Similarity=0.245 Sum_probs=30.9
Q ss_pred hHHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 163 NDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 163 ~~~~~lGGl~-~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
-|++..|+|. +++.+|+..+-.+-..|...|-.++.+||+.+.
T Consensus 180 pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk 223 (938)
T KOG1077|consen 180 PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK 223 (938)
T ss_pred ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh
Confidence 3556667765 667888887777777888888888877765544
No 152
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=90.65 E-value=5.8 Score=43.16 Aligned_cols=141 Identities=19% Similarity=0.159 Sum_probs=83.8
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc----CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951 131 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL----GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 206 (397)
Q Consensus 131 ~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l----GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~ 206 (397)
++.++-+ .+++.+--||+.|+.++-..-....|+.. .-+..++..++ .++..+..+++||.++..| |.-++.
T Consensus 549 ~l~~l~~--wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~-~~g~~~ 624 (745)
T KOG0301|consen 549 ALAILLQ--WPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSN-PAGREL 624 (745)
T ss_pred HHHHHhc--CCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccC-HHHHHH
Confidence 4444433 24667888999999999776666666653 23445555555 6788999999999999976 888888
Q ss_pred HHHcCcHHHHHHhhc---C-CCHHH-HHHHHHHH--HH-HhcCChhcHHHHHhcCcHHHHHHhhc---CCCccHHHHHHH
Q 015951 207 VLELGALSKLMKMVK---S-SFVEE-AVKALYTV--SS-LIRNNLAGQEMFYVEAGDLMLQDILG---NSSFEIRLHRKA 275 (397)
Q Consensus 207 vl~~g~lp~Ll~LL~---s-~~~~v-~~kAl~AL--S~-LiR~~~~~~~~f~~~gGi~~L~~lL~---s~~~d~klr~kA 275 (397)
+... +..++.-+. + ++..+ +.-|..|+ |- ++..+. +.+|.+.|..++. .+..|....-+.
T Consensus 625 ~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~-------~~~~~~~l~~ai~~~~e~~~d~EA~yR~ 695 (745)
T KOG0301|consen 625 FMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNE-------QLEGKEVLLSAISTLLEPVDDLEAIYRL 695 (745)
T ss_pred HHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhccc-------ccchHHHHHHHHHhhcccchhHHHHHHH
Confidence 7765 333333222 1 11222 22222222 21 112111 2577777777664 233354456677
Q ss_pred HHHHHHHhh
Q 015951 276 VSLVGDLAK 284 (397)
Q Consensus 276 ~~lL~~L~~ 284 (397)
+-+|.+|+.
T Consensus 696 l~AlgtL~t 704 (745)
T KOG0301|consen 696 LVALGTLMT 704 (745)
T ss_pred HHHHHhhcc
Confidence 778888875
No 153
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=90.46 E-value=1.9 Score=37.70 Aligned_cols=69 Identities=20% Similarity=0.254 Sum_probs=56.0
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcCCC-HH---HHHHHHHHHHHHhc
Q 015951 172 SVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSF-VE---EAVKALYTVSSLIR 240 (397)
Q Consensus 172 ~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s~~-~~---v~~kAl~ALS~LiR 240 (397)
..|-.-|.+++|.++..|..++-.+++|. +.++..+.....+..|.+++.+.. .. |+.+++--|..-..
T Consensus 45 ~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 45 RALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 34556788899999999999999999997 678888888889999999988654 33 88888877666543
No 154
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.32 E-value=6.4 Score=42.14 Aligned_cols=141 Identities=17% Similarity=0.142 Sum_probs=99.7
Q ss_pred CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCH-HHHHHHHHHHHHHhcC--ChHHHHHHHHcC-cHHHH
Q 015951 141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDT-DIRKISAWILGKASQN--NPLVQKQVLELG-ALSKL 216 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~-~ir~~Aa~vLg~~aqN--Np~~Q~~vl~~g-~lp~L 216 (397)
.++-+..|+.=+.++|.-.-+.--..-.|-+..+++|+.++++ .++..|..+-+.+..- .+...+. ++.| .+..|
T Consensus 263 ~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl 341 (675)
T KOG0212|consen 263 EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVL 341 (675)
T ss_pred cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHH
Confidence 3566777888888888765555555556778888899977766 5888887765443321 1222211 4444 46788
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 217 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 217 l~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
.+.++++..+.|..++.=|.-+-+.+|. +--.....-+..|...|.++++ .+-.++.++++++|..
T Consensus 342 ~~~l~~~~~~tri~~L~Wi~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd--~vvl~~L~lla~i~~s 407 (675)
T KOG0212|consen 342 TKYLSDDREETRIAVLNWIILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSD--EVVLLALSLLASICSS 407 (675)
T ss_pred HHHhhcchHHHHHHHHHHHHHHHhhCcc-hhhhhccHHHHHHHHhhcCchh--HHHHHHHHHHHHHhcC
Confidence 8899998889999999999988766654 4444456678888888888743 4788999999999974
No 155
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.30 E-value=8.5 Score=44.34 Aligned_cols=175 Identities=13% Similarity=0.118 Sum_probs=103.6
Q ss_pred HHHHHHHHHHhccCCCCchh-HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC------cHHHH
Q 015951 144 DSQRALQELLILVEPIDNAN-DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG------ALSKL 216 (397)
Q Consensus 144 ~k~~AL~~L~~Lve~iDnA~-~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g------~lp~L 216 (397)
.+..++..|..+++-.++=. +|+ ...++-+|=+++.-+..-|..|..||-.++. -..+.+.| .|...
T Consensus 713 ~~~~rl~~L~~L~~~~~~e~~~~i-~k~I~EvIL~~Ke~n~~aR~~Af~lL~~i~~-----i~~~~d~g~e~~~~~lnef 786 (1176)
T KOG1248|consen 713 AQASRLKCLKRLLKLLSAEHCDLI-PKLIPEVILSLKEVNVKARRNAFALLVFIGA-----IQSSLDDGNEPASAILNEF 786 (1176)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHhcccccHHHHhhHHHHHHHHHH-----HHhhhcccccchHHHHHHH
Confidence 45566777776666555111 122 1345555444577889999999999998882 11112222 44455
Q ss_pred HHhhcCC----CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015951 217 MKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 292 (397)
Q Consensus 217 l~LL~s~----~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~ 292 (397)
+.++... ..-+....+.|++.++..+......-.-.+-++.+..+|.+. ...++.-|+.++.-++.. .|
T Consensus 787 l~~Isagl~gd~~~~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~--sreI~kaAI~fikvlv~~-----~p 859 (1176)
T KOG1248|consen 787 LSIISAGLVGDSTRVVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASN--SREIAKAAIGFIKVLVYK-----FP 859 (1176)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHc-----CC
Confidence 5555433 333344448999998876655444333345666777777776 456788888998888752 33
Q ss_pred CcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951 293 VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 293 ~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 331 (397)
+..-.-...-+++.+..++......++-++-..|..|..
T Consensus 860 e~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 860 EECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 322222222366777776666566777777666665553
No 156
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=90.21 E-value=2 Score=46.28 Aligned_cols=70 Identities=21% Similarity=0.167 Sum_probs=57.2
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH---HHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015951 169 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL---VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 241 (397)
Q Consensus 169 GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~---~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~ 241 (397)
|-+|.|.+.|++....|..+....+|++|.|.|+ .++++. .--.|+.+|.+-+.++|+.|...++++.|-
T Consensus 688 ~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~Is~a 760 (975)
T COG5181 688 GILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCISRA 760 (975)
T ss_pred hccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhHHhh
Confidence 6788889999999999999999999999999886 344433 123478888888889999999988888764
No 157
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.06 E-value=1.3 Score=36.19 Aligned_cols=72 Identities=15% Similarity=0.136 Sum_probs=56.5
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 244 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~ 244 (397)
+...+..|+++.+.+|.++...|+.+...+. ....--.+.+..++..|+++++-+--.|+.+++.++..+|.
T Consensus 5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~ 76 (92)
T PF10363_consen 5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD 76 (92)
T ss_pred HHHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH
Confidence 4456778899999999999999999998776 11122235677888889888888888888889988877765
No 158
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=89.82 E-value=8.5 Score=45.47 Aligned_cols=146 Identities=12% Similarity=0.144 Sum_probs=97.0
Q ss_pred CCHHHHHHHHHHHhhCCCC---------CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHH
Q 015951 122 PSDAQLIQIAIDDLNNSTL---------SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWI 192 (397)
Q Consensus 122 ~~d~~lmk~~i~~L~~~~~---------s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~v 192 (397)
+..-..||-.+..+...+. +--+.-+|.....++.+.-...+.|- +-+..++..|..+.+.+|..|..|
T Consensus 762 ~~~~n~~K~~~~~Ik~~~~~~~~~~~~s~~~d~~~a~li~~~la~~r~f~~sfD--~yLk~Il~~l~e~~ialRtkAlKc 839 (1692)
T KOG1020|consen 762 ITVENELKYILSKIKDKEKSGRGPKLNSRFADDDDAKLIVFYLAHARSFSQSFD--PYLKLILSVLGENAIALRTKALKC 839 (1692)
T ss_pred hhhHHHHHHHHHHhcchhhhccCcCCCCccccchhHHHHHHHHHhhhHHHHhhH--HHHHHHHHHhcCchHHHHHHHHHH
Confidence 3444556666666655420 00122234444445555444444443 235566788899999999999999
Q ss_pred HHHHhcC------ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC
Q 015951 193 LGKASQN------NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 266 (397)
Q Consensus 193 Lg~~aqN------Np~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~ 266 (397)
|+.++.- +|.+|..|.. =+.+++..||..|+--+|.-+-.+|....++++ .+..-+.++
T Consensus 840 lS~ive~Dp~vL~~~dvq~~Vh~---------R~~DssasVREAaldLvGrfvl~~~e~~~qyY~-----~i~erIlDt- 904 (1692)
T KOG1020|consen 840 LSMIVEADPSVLSRPDVQEAVHG---------RLNDSSASVREAALDLVGRFVLSIPELIFQYYD-----QIIERILDT- 904 (1692)
T ss_pred HHHHHhcChHhhcCHHHHHHHHH---------hhccchhHHHHHHHHHHhhhhhccHHHHHHHHH-----HHHhhcCCC-
Confidence 9999875 4555555543 344556789999999999888888887777763 333334443
Q ss_pred ccHHHHHHHHHHHHHHhhc
Q 015951 267 FEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 267 ~d~klr~kA~~lL~~L~~~ 285 (397)
.+.+|.++...+.++|.+
T Consensus 905 -gvsVRKRvIKIlrdic~e 922 (1692)
T KOG1020|consen 905 -GVSVRKRVIKILRDICEE 922 (1692)
T ss_pred -chhHHHHHHHHHHHHHHh
Confidence 566999999999999974
No 159
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.82 E-value=1.8 Score=43.05 Aligned_cols=114 Identities=17% Similarity=0.129 Sum_probs=84.5
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH--hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015951 213 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY--VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 290 (397)
Q Consensus 213 lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~--~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~ 290 (397)
+-.++.++.+.++.||..|+.-+.+++.. + .+.|. +.--++.|.+++... +. ...|++++-|++.
T Consensus 5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~-~~~~~~~~~~~lk~l~qL~~~~--~~--~~~a~~alVnlsq------ 71 (353)
T KOG2973|consen 5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--G-LQSLSKYSEALLKDLTQLLKDL--DP--AEPAATALVNLSQ------ 71 (353)
T ss_pred HHHHHHHhccCChHHHHHHHHHHhhcccc--c-hhhhccchhhhHHHHHHHccCc--cc--ccHHHHHHHHHHh------
Confidence 45688999999999999999999888765 2 22332 234566677777754 22 5679999999985
Q ss_pred CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHH
Q 015951 291 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVL 340 (397)
Q Consensus 291 ~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~ 340 (397)
++..+..+.+. +++.++..+..+....-+-....|.||++....++..+
T Consensus 72 ~~~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll 120 (353)
T KOG2973|consen 72 KEELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALL 120 (353)
T ss_pred hHHHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHH
Confidence 56677777766 88889998888877778888888899998876665544
No 160
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.54 E-value=16 Score=42.18 Aligned_cols=107 Identities=15% Similarity=0.129 Sum_probs=78.2
Q ss_pred HHHHh-cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951 173 VLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 249 (397)
Q Consensus 173 ~Li~l-L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~--g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f 249 (397)
.+... .++.++.+|..|-.+|..+++. |.++-.+.+. .....|.+-+++.+...+..++.+|+.+++.++.-...|
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~ 735 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL 735 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 45544 4677999999999999999987 6555555443 234555566666666789999999999999888545556
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015951 250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 283 (397)
Q Consensus 250 ~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~ 283 (397)
+-..-.++++.. +.. +.+.|+.|.-+|..++
T Consensus 736 i~k~I~EvIL~~-Ke~--n~~aR~~Af~lL~~i~ 766 (1176)
T KOG1248|consen 736 IPKLIPEVILSL-KEV--NVKARRNAFALLVFIG 766 (1176)
T ss_pred HHHHHHHHHHhc-ccc--cHHHHhhHHHHHHHHH
Confidence 655555565555 543 6778999999999998
No 161
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.45 E-value=7.8 Score=42.69 Aligned_cols=160 Identities=14% Similarity=0.143 Sum_probs=105.0
Q ss_pred HhHHHHHHHHHhcC-CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015951 107 KRQMEIKELMEKLK-TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 185 (397)
Q Consensus 107 ~r~~~L~ea~~~~~-~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~i 185 (397)
+|++-+|.++..++ ++|-..+--..+.-.... +.+.|.-.-.-+-. .-..+-....+.+..++.=..++++.+
T Consensus 29 kr~~a~kkvIa~Mt~G~DvSslF~dvvk~~~T~--dlelKKlvyLYl~n----Ya~~~P~~a~~avnt~~kD~~d~np~i 102 (734)
T KOG1061|consen 29 KRKDAVKKVIAYMTVGKDVSSLFPDVVKCMQTR--DLELKKLVYLYLMN----YAKGKPDLAILAVNTFLKDCEDPNPLI 102 (734)
T ss_pred hHHHHHHHHHhcCccCcchHhhhHHHHhhcccC--CchHHHHHHHHHHH----hhccCchHHHhhhhhhhccCCCCCHHH
Confidence 68888999998886 344333322222222222 23444333222222 222222333456666776677899999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015951 186 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 265 (397)
Q Consensus 186 r~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 265 (397)
|..|.+.+|.+- -+...+. ...+|.+.++++.+-+|+.|...+..+-.-+ .+.+...|=+..|..++.+.
T Consensus 103 R~lAlrtm~~l~--v~~i~ey-----~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~ 172 (734)
T KOG1061|consen 103 RALALRTMGCLR--VDKITEY-----LCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDS 172 (734)
T ss_pred HHHHhhceeeEe--ehHHHHH-----HHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCC
Confidence 999999988774 3444443 4678999999999999999988888874333 46777888899999999965
Q ss_pred CccHHHHHHHHHHHHHHhh
Q 015951 266 SFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 266 ~~d~klr~kA~~lL~~L~~ 284 (397)
++-+-..|+.+++.+..
T Consensus 173 --~p~VVAnAlaaL~eI~e 189 (734)
T KOG1061|consen 173 --NPMVVANALAALSEIHE 189 (734)
T ss_pred --CchHHHHHHHHHHHHHH
Confidence 44578888888888875
No 162
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=89.44 E-value=19 Score=37.07 Aligned_cols=137 Identities=18% Similarity=0.112 Sum_probs=92.9
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCC---------chhHHHhcC----CHHHH
Q 015951 108 RQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID---------NANDLSKLG----GLSVL 174 (397)
Q Consensus 108 r~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD---------nA~~~~~lG----Gl~~L 174 (397)
-.-|+-+++=.=+-|.-.+...++++.+.++ +-...|-+.+..++.+.| +.+-+.+-. -+|.+
T Consensus 253 ~~~Wi~KaLv~R~~~~~~~~~~~L~~lL~~~----~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L 328 (415)
T PF12460_consen 253 ILIWITKALVMRGHPLATELLDKLLELLSSP----ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKL 328 (415)
T ss_pred HHHHHHHHHHHcCCchHHHHHHHHHHHhCCh----hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHH
Confidence 3456666542213455666777788888763 344556666666665532 223344443 45555
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015951 175 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 248 (397)
Q Consensus 175 i~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~ 248 (397)
++..+..+.+.|.....+|+.+..|-|..--.---...+|.|++-|+.++..++..++..|..++++.+.....
T Consensus 329 ~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 329 LEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 66556667779999999999999998843222212357899999999988899999999999999988665544
No 163
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=89.33 E-value=1.2 Score=39.77 Aligned_cols=101 Identities=18% Similarity=0.100 Sum_probs=76.3
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChHHHHHHH-HcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC
Q 015951 177 QLNHPDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVK--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 253 (397)
Q Consensus 177 lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl-~~g~lp~Ll~LL~--s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g 253 (397)
++..++.+-...|..+++.+-+--|.+-..++ ..|.++.++.+.. +.+..++..++.+|+..+-+ .....|+..+
T Consensus 51 ~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d--~~~r~~I~~~ 128 (157)
T PF11701_consen 51 LLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID--KSCRTFISKN 128 (157)
T ss_dssp HHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS--HHHHHCCHHH
T ss_pred HHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc--HHHHHHHHHH
Confidence 44555556788899999999999998777766 6688899999999 66778899999999987643 4567777889
Q ss_pred cHHHHHHhhcCCCccHH-HHHHHHHHHH
Q 015951 254 GDLMLQDILGNSSFEIR-LHRKAVSLVG 280 (397)
Q Consensus 254 Gi~~L~~lL~s~~~d~k-lr~kA~~lL~ 280 (397)
|++.|..+++.+. +.. +|..|+-.|.
T Consensus 129 ~~~~L~~~~~~~~-~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 129 YVSWLKELYKNSK-DDSEIRVLAAVGLC 155 (157)
T ss_dssp CHHHHHHHTTTCC--HH-CHHHHHHHHH
T ss_pred HHHHHHHHHcccc-chHHHHHHHHHHHh
Confidence 9999999997543 333 6666655443
No 164
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=88.76 E-value=8.3 Score=41.27 Aligned_cols=156 Identities=12% Similarity=0.132 Sum_probs=112.8
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhcCChhcHH
Q 015951 172 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV----EEAVKALYTVSSLIRNNLAGQE 247 (397)
Q Consensus 172 ~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~----~v~~kAl~ALS~LiR~~~~~~~ 247 (397)
..+.+.+.+++..-|..|..-+..+.. .+..-..|+...++..|.+++.++.. .+..-.+.|+|.+.-|.--...
T Consensus 86 ~~i~e~l~~~~~~~~~~a~k~l~sls~-d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~ 164 (713)
T KOG2999|consen 86 KRIMEILTEGNNISKMEALKELDSLSL-DPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE 164 (713)
T ss_pred HHHHHHHhCCCcHHHHHHHHHHhhccc-cHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence 345677888888888889999999886 57788889999999999999998763 5677889999998776543332
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHH
Q 015951 248 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK 327 (397)
Q Consensus 248 ~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~ 327 (397)
.+ ...++.....+.+-+..+..+-..|...+-++.. .++.....+.++--+..++.+|...|..++-.|+..+.
T Consensus 165 ~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl-----~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~n 238 (713)
T KOG2999|consen 165 SV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVL-----GSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLN 238 (713)
T ss_pred ec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHh-----CChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHH
Confidence 22 2233333333333222233355567777777775 35567788889999999999999999899988888777
Q ss_pred HHhcCCh
Q 015951 328 NLLQLRT 334 (397)
Q Consensus 328 ~L~~~~~ 334 (397)
++....+
T Consensus 239 al~~~a~ 245 (713)
T KOG2999|consen 239 ALFRKAP 245 (713)
T ss_pred HHHhhCC
Confidence 7665433
No 165
>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.
Probab=88.70 E-value=6.1 Score=40.50 Aligned_cols=126 Identities=13% Similarity=0.109 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhCCC-CCHHHHHHHHHHHHhccCCCCch-hHHHhcCCHHHHHHhcC-C---CCHHHHHHHHHHHHHHhc
Q 015951 125 AQLIQIAIDDLNNST-LSLEDSQRALQELLILVEPIDNA-NDLSKLGGLSVLVGQLN-H---PDTDIRKISAWILGKASQ 198 (397)
Q Consensus 125 ~~lmk~~i~~L~~~~-~s~e~k~~AL~~L~~Lve~iDnA-~~~~~lGGl~~Li~lL~-s---~~~~ir~~Aa~vLg~~aq 198 (397)
..+..-+..++.|+. +.+.---.|+..+.+++++--.. ..+...|..+.+++.+. . ++.++-..--.+++.+|=
T Consensus 105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL 184 (379)
T PF06025_consen 105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL 184 (379)
T ss_pred hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence 566777778888765 34556667899999999875544 57888888888998776 3 678888889999999997
Q ss_pred CChHHHHHHHHcCcHHHHHHhhcCCCH--HHHH-HHHHHHH----HHhcCChhcHHHHHh
Q 015951 199 NNPLVQKQVLELGALSKLMKMVKSSFV--EEAV-KALYTVS----SLIRNNLAGQEMFYV 251 (397)
Q Consensus 199 NNp~~Q~~vl~~g~lp~Ll~LL~s~~~--~v~~-kAl~ALS----~LiR~~~~~~~~f~~ 251 (397)
| ..-++.|.+.+.++.+++++.+..= ..+. -....|+ -|+||+|.-+..+++
T Consensus 185 N-~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 185 N-NRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred C-HHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 6 4588889999999999999987541 1111 2344444 489999987776654
No 166
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=88.62 E-value=13 Score=41.73 Aligned_cols=122 Identities=20% Similarity=0.272 Sum_probs=82.3
Q ss_pred hhHHHhcCCHHHHHHhcCC-----CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc----CCC----HHHH
Q 015951 162 ANDLSKLGGLSVLVGQLNH-----PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK----SSF----VEEA 228 (397)
Q Consensus 162 A~~~~~lGGl~~Li~lL~s-----~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~----s~~----~~v~ 228 (397)
++.+.+.||+..+++.|.+ ...++-.....++..+|+ -+.+++++++.|+++.|++.+. ... ..+.
T Consensus 110 ~~v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~ 188 (802)
T PF13764_consen 110 ASVLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIA 188 (802)
T ss_pred HHHhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHH
Confidence 5666778999999998865 335677778889999986 5899999999999999998874 322 3445
Q ss_pred HHHHHHHHHHhcCC----hhcHHHHHhcCc--------HHHHHHhhcCC--CccHHHHHHHHHHHHHHhh
Q 015951 229 VKALYTVSSLIRNN----LAGQEMFYVEAG--------DLMLQDILGNS--SFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 229 ~kAl~ALS~LiR~~----~~~~~~f~~~gG--------i~~L~~lL~s~--~~d~klr~kA~~lL~~L~~ 284 (397)
.+.+.-+-.++..- ......+....| +..|...+.++ ..+.++..-.+.+|-+|+.
T Consensus 189 E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~ 258 (802)
T PF13764_consen 189 EQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTY 258 (802)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhc
Confidence 55554444443321 111122233344 67777777754 2356677788888888876
No 167
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=88.21 E-value=2.5 Score=45.37 Aligned_cols=98 Identities=16% Similarity=0.202 Sum_probs=55.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 250 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~ 250 (397)
+..+++++...+..||..|..-|..+|.+||+.-..+ ...|++||.+++......+=.+|.++++.+|.+.-.
T Consensus 61 i~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~-- 133 (556)
T PF05918_consen 61 INAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLT-- 133 (556)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHH--
T ss_pred HHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHH--
Confidence 3445555555668999999999999999988554444 567899999988776777777787887776653211
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015951 251 VEAGDLMLQDILGNSSFEIRLHRKAVSLVG 280 (397)
Q Consensus 251 ~~gGi~~L~~lL~s~~~d~klr~kA~~lL~ 280 (397)
.++.++..+++.+..+|.++..+|.
T Consensus 134 -----~lf~~i~~~~~~de~~Re~~lkFl~ 158 (556)
T PF05918_consen 134 -----GLFSQIESSKSGDEQVRERALKFLR 158 (556)
T ss_dssp -----HHHHHHH---HS-HHHHHHHHHHHH
T ss_pred -----HHHHHHHhcccCchHHHHHHHHHHH
Confidence 1122233111124457777776554
No 168
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=87.74 E-value=7.9 Score=34.78 Aligned_cols=115 Identities=15% Similarity=0.103 Sum_probs=80.8
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--HHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc
Q 015951 211 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 288 (397)
Q Consensus 211 g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gG--i~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~ 288 (397)
.....+.++|++.+...|-.++.-+..++..++. +.|.++++ +..|..+|+.+ ++..++.-++..+.+|...-
T Consensus 25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~--e~l~~~~~~W~~~Ll~~L~~~-~~~~~~~~ai~~L~~l~~~~-- 99 (165)
T PF08167_consen 25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSW--EILLSHGSQWLRALLSILEKP-DPPSVLEAAIITLTRLFDLI-- 99 (165)
T ss_pred HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHHh--
Confidence 3566788999998888899999999999887643 56656554 56778888875 45678889999999998631
Q ss_pred cCCCCcchhHHh---CCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 289 NMHKVEPPLFRD---RFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 289 ~~~~~~~~~l~~---~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
...++....+.. .++++.++.++.. ..+.+.++.+|..+...
T Consensus 100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~ 144 (165)
T PF08167_consen 100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH 144 (165)
T ss_pred cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence 123333222222 2455555666654 57889999999998875
No 169
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=87.52 E-value=8.6 Score=38.41 Aligned_cols=146 Identities=14% Similarity=0.072 Sum_probs=87.6
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHc-----------CcHHHHHHhhcCCC-----HHH-HHHHHHHHHHHhcCChh
Q 015951 182 DTDIRKISAWILGKASQNNPLVQKQVLEL-----------GALSKLMKMVKSSF-----VEE-AVKALYTVSSLIRNNLA 244 (397)
Q Consensus 182 ~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~-----------g~lp~Ll~LL~s~~-----~~v-~~kAl~ALS~LiR~~~~ 244 (397)
.-++|..|+.|+..-+.+|+..|..|++. .....|++-|-+.+ +.. --.|...++-++++++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 67899999999999999999999999985 11223444443111 223 34789999999999999
Q ss_pred cHHHHHhc------Cc------HHHHHHhhcCC---CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015951 245 GQEMFYVE------AG------DLMLQDILGNS---SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 309 (397)
Q Consensus 245 ~~~~f~~~------gG------i~~L~~lL~s~---~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 309 (397)
+++....- .| ++.+..+|... +.+.+++.--+.+|.--+.+ .......++.+.+-++.|++
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e----~p~AV~~FL~~~s~l~~Li~ 206 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFE----CPDAVNDFLSEGSNLQSLIE 206 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-----HHHHHHHHCSTTHHHHHHH
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhC----CHHHHHHHHcCcchHHHHHH
Confidence 87776432 22 33455555441 34667776666666665542 12234444555678999998
Q ss_pred hccC---CChHHHHHHHHHHHHHhc
Q 015951 310 LTAS---ADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 310 lL~~---~d~dv~E~aL~aL~~L~~ 331 (397)
.... .++-++=-++..|+-+..
T Consensus 207 ~~~~~~~~~~~VqGL~A~LLGicye 231 (312)
T PF04869_consen 207 FSNQSSSEDVLVQGLCAFLLGICYE 231 (312)
T ss_dssp HHS--TCCCHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCcchHHHHHHHHHHHHHH
Confidence 7533 255555555555555544
No 170
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=87.39 E-value=32 Score=38.37 Aligned_cols=191 Identities=10% Similarity=-0.025 Sum_probs=105.6
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~-s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
.|..++.-+..+ +.|-|...|..+..||.-.-.-..+....-+|.+....- ...+.=|..--.++-+.+ ..-+
T Consensus 637 vmlil~rEf~sP--DeemkkivLKVv~qcc~t~Gv~~~y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv----~ia~ 710 (1172)
T KOG0213|consen 637 VMLILIREFGSP--DEEMKKIVLKVVKQCCATDGVEPAYIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTV----EIAA 710 (1172)
T ss_pred HHHHHHHhhCCC--hHHHHHHHHHHHHHHhcccCCCHHHHhhhhhHHHHhhhhhhhhhccccchhhHHHHHH----HHHH
Confidence 477777766655 567888999999998865444445555556666654321 110000100011111111 0111
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
++-..-.+..++.=+.++++..|.-+..+++.++..-+. ...+-.+.--+..+...++....+..+-.+...++.+=..
T Consensus 711 KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg 790 (1172)
T KOG0213|consen 711 KVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALG 790 (1172)
T ss_pred HhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHh
Confidence 111122456666667777888888888888887754322 1222223333444555566443344455555555554331
Q ss_pred chhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 285 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 285 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
...++.+ .-+|..+...|++..++++.+|+..+..++..
T Consensus 791 -------~r~kpyl--pqi~stiL~rLnnksa~vRqqaadlis~la~V 829 (1172)
T KOG0213|consen 791 -------GRVKPYL--PQICSTILWRLNNKSAKVRQQAADLISSLAKV 829 (1172)
T ss_pred -------hccccch--HHHHHHHHHHhcCCChhHHHHHHHHHHHHHHH
Confidence 1122222 12455667789999999999999999888843
No 171
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.22 E-value=8.3 Score=42.81 Aligned_cols=160 Identities=13% Similarity=0.130 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcC
Q 015951 143 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 222 (397)
Q Consensus 143 e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s 222 (397)
..|..|+..+-.++-.=+++.+ -+|.++....+.+.+||...--.|-.-|.++|... .=-|..+=+-|.+
T Consensus 50 ~~KleAmKRIia~iA~G~dvS~-----~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-----LLSIntfQk~L~D 119 (968)
T KOG1060|consen 50 SLKLEAMKRIIALIAKGKDVSL-----LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-----LLSINTFQKALKD 119 (968)
T ss_pred HHHHHHHHHHHHHHhcCCcHHH-----HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-----eeeHHHHHhhhcC
Confidence 5688888888776655444443 46778888888888888877777776666655211 1236666777888
Q ss_pred CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCC
Q 015951 223 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 302 (397)
Q Consensus 223 ~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g 302 (397)
+++.+|.-|+.++|+| |-. ....+ .+-.+.++..++ .+.+|..|+.+|--|-+ .+++....+
T Consensus 120 pN~LiRasALRvlSsI-Rvp--~IaPI----~llAIk~~~~D~--s~yVRk~AA~AIpKLYs-----Ld~e~k~qL---- 181 (968)
T KOG1060|consen 120 PNQLIRASALRVLSSI-RVP--MIAPI----MLLAIKKAVTDP--SPYVRKTAAHAIPKLYS-----LDPEQKDQL---- 181 (968)
T ss_pred CcHHHHHHHHHHHHhc-chh--hHHHH----HHHHHHHHhcCC--cHHHHHHHHHhhHHHhc-----CChhhHHHH----
Confidence 8899999999999997 421 11111 122334555555 67899999999998875 345544433
Q ss_pred cHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951 303 FLKSVVDLTASADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 303 ~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 331 (397)
+..+-.+|...++.|.-.|+.|...+..
T Consensus 182 -~e~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 182 -EEVIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred -HHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence 3445556676677777777766665543
No 172
>KOG1788 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.10 E-value=1 Score=51.12 Aligned_cols=126 Identities=20% Similarity=0.227 Sum_probs=87.2
Q ss_pred HHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc
Q 015951 232 LYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT 311 (397)
Q Consensus 232 l~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL 311 (397)
--+|-++++++..++..|.+++|..+++.++-++ .-|.-...+++.|... ++.. +.+..+-++|+.|
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpflind----ehRSslLrivscLitv-----dpkq----vhhqelmalVdtL 729 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND----EHRSSLLRIVSCLITV-----DPKQ----VHHQELMALVDTL 729 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEeeech----HHHHHHHHHHHHHhcc-----Cccc----ccHHHHHHHHHHH
Confidence 3467789999999999999999999999998654 2466777788888752 3321 2334556677777
Q ss_pred cCC------------ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH--HhHHhhhhhhhhhhH
Q 015951 312 ASA------------DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ--QLQEVMLEEDQRDYA 370 (397)
Q Consensus 312 ~~~------------d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~--~~~~l~~~e~~~~~~ 370 (397)
+++ ..+.....+.+++.....+...+.+|++.+|+..++.+|.- ...+++.+.|+.-|.
T Consensus 730 ksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyi 802 (2799)
T KOG1788|consen 730 KSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYI 802 (2799)
T ss_pred HhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHH
Confidence 652 23556667888999988777788999999997655554431 245565555444444
No 173
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=87.03 E-value=8.6 Score=34.52 Aligned_cols=108 Identities=15% Similarity=0.098 Sum_probs=73.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC--cHHHHHHhhcCCC-HHHHHHHHHHHHH---HhcCChh
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMVKSSF-VEEAVKALYTVSS---LIRNNLA 244 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g--~lp~Ll~LL~s~~-~~v~~kAl~ALS~---LiR~~~~ 244 (397)
+..+..+|++.++.-|+.++..++..+++++ .+.+.+++ .+..|+++|+..+ ..+...|+.+++. .++++|.
T Consensus 27 ~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 27 VTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 4456689999999999999999999999874 34454443 5899999998855 4556666666665 4567777
Q ss_pred cHHHHHhcCc---HHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 245 GQEMFYVEAG---DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 245 ~~~~f~~~gG---i~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
-..++..... ++.++.++++ ......++.++..+..
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~----~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD----SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc----cccHHHHHHHHHHHHH
Confidence 6666654432 3333333332 1356678888888775
No 174
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=87.00 E-value=5.1 Score=38.38 Aligned_cols=98 Identities=14% Similarity=0.163 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhccCCCCchhHHHhcCCHHHHH-HhcC-----CCCHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCcHHHH
Q 015951 144 DSQRALQELLILVEPIDNANDLSKLGGLSVLV-GQLN-----HPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKL 216 (397)
Q Consensus 144 ~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li-~lL~-----s~~~~ir~~Aa~vLg~~aqNNp-~~Q~~vl~~g~lp~L 216 (397)
...+||.-|+-++...+....|.+.. +|..+ ++|+ ++.+-+|..+..+||.+++|.. .+-........+|.+
T Consensus 116 RvcnaL~lLQclaShPetk~~Fl~Ah-iplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc 194 (315)
T COG5209 116 RVCNALNLLQCLASHPETKKVFLDAH-IPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC 194 (315)
T ss_pred HHHHHHHHHHHHhcCcchheeeeecc-cceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence 34578888888888888877777653 34333 5553 2456799999999999999864 455555667899999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015951 217 MKMVKSSFVEEAVKALYTVSSLIRNN 242 (397)
Q Consensus 217 l~LL~s~~~~v~~kAl~ALS~LiR~~ 242 (397)
+++...+++--+.-|++-+.-++.+.
T Consensus 195 LrIme~gSElSktvaifI~qkil~dD 220 (315)
T COG5209 195 LRIMELGSELSKTVAIFIFQKILGDD 220 (315)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhccc
Confidence 99999988766777888777776554
No 175
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=86.96 E-value=7.2 Score=34.29 Aligned_cols=92 Identities=12% Similarity=0.131 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHH
Q 015951 229 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 308 (397)
Q Consensus 229 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 308 (397)
....-.|+-+++..+.+.. .++..|..-|+++ ++.++..|+.+|-.++. +.++.+...+.+..++..++
T Consensus 19 w~~ileicD~In~~~~~~k-----~a~rai~krl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evas~~Fl~el~ 87 (139)
T cd03567 19 WEAIQAFCEQINKEPEGPQ-----LAVRLLAHKIQSP--QEKEALQALTVLEACMK----NCGERFHSEVGKFRFLNELI 87 (139)
T ss_pred HHHHHHHHHHHHcCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HcCHHHHHHHHhHHHHHHHH
Confidence 4455666666665543322 3566677778876 56789999999999986 46677888888899999999
Q ss_pred HhccC------CChHHHHHHHHHHHHHhc
Q 015951 309 DLTAS------ADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 309 ~lL~~------~d~dv~E~aL~aL~~L~~ 331 (397)
.++.. .+..|+++++..+..-+.
T Consensus 88 kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (139)
T cd03567 88 KLVSPKYLGSRTSEKVKTKIIELLYSWTL 116 (139)
T ss_pred HHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 99963 478999999988877663
No 176
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=86.71 E-value=2.7 Score=38.99 Aligned_cols=95 Identities=15% Similarity=0.165 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh
Q 015951 183 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 262 (397)
Q Consensus 183 ~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL 262 (397)
..+-..+..+|...|++|++.|..+.++ ++.++..+.......-.-+...+.++.++|+.....+.+.. +..++.++
T Consensus 75 ~~l~~~~~~lL~~f~~~n~~NQ~~l~~~--~~~l~~~~~~~~~~~~~~~~d~l~~i~~dN~~L~~~i~e~~-I~~~i~ll 151 (207)
T PF01365_consen 75 KELFRLCYRLLRQFCRGNRENQKYLFKH--LDFLISIFMQLQIGYGLGALDVLTEIFRDNPELCESISEEH-IEKFIELL 151 (207)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHH--HH-----HHCCCH-TTHHHHHHHHHHHTT---------------------
T ss_pred HHHHHHHHHHHHHHHHhCHHHHHHHHHH--HhHHHHHHHHhhccCCchHHHHHHHHHHCcHHHHHHhhHHH-HHHHHHHH
Confidence 4677899999999999999999999986 55444444433333334567778889999999888887665 88889988
Q ss_pred cCCCccHHHHHHHHHHHHHHhh
Q 015951 263 GNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 263 ~s~~~d~klr~kA~~lL~~L~~ 284 (397)
...+ -+.+-..+++.++.
T Consensus 152 ~~~g----r~~~~L~~L~~lc~ 169 (207)
T PF01365_consen 152 RKHG----RQPRYLDFLSSLCV 169 (207)
T ss_dssp ----------------------
T ss_pred HHcC----CChHHHHHHhhhcc
Confidence 8632 23456777888875
No 177
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=86.02 E-value=2 Score=45.08 Aligned_cols=174 Identities=16% Similarity=0.156 Sum_probs=93.6
Q ss_pred HHHHHHHHhccCCCCchhHHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc----C--ChHHHHHHHHcCcHHHHHH
Q 015951 146 QRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQ----N--NPLVQKQVLELGALSKLMK 218 (397)
Q Consensus 146 ~~AL~~L~~Lve~iDnA~~~~~-lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aq----N--Np~~Q~~vl~~g~lp~Ll~ 218 (397)
..|+..+.-+|-..-.+.+..- ......++..|.+..-..|..|+|.+|++.- | ||..+..=...-.|.++++
T Consensus 409 ~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~ 488 (728)
T KOG4535|consen 409 AAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLR 488 (728)
T ss_pred HHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHH
Confidence 3455555555543333333221 2344445555666677899999999999873 3 4444433332234566666
Q ss_pred hhcCC---CHHHHHHHHHHHHHHhcCChh----cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCC
Q 015951 219 MVKSS---FVEEAVKALYTVSSLIRNNLA----GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 291 (397)
Q Consensus 219 LL~s~---~~~v~~kAl~ALS~LiR~~~~----~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~ 291 (397)
..... ...|+..|..||+++..--.+ +... ...+.+..+...-..+ ...++|-+|+.+++||..+
T Consensus 489 ~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e-~~~~~~~~l~~~v~~~-~~~kV~WNaCya~gNLfkn------ 560 (728)
T KOG4535|consen 489 SAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAE-IIEESIQALISTVLTE-AAMKVRWNACYAMGNLFKN------ 560 (728)
T ss_pred HHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHH-HHHHHHHhcccceecc-cccccchHHHHHHHHhhcC------
Confidence 55432 346888899999887542111 1111 1122222222222222 2567999999999999863
Q ss_pred CCcchhHHhCCcHHHH----HHhcc-CCChHHHHHHHHHHHHH
Q 015951 292 KVEPPLFRDRFFLKSV----VDLTA-SADLDLQEKALAAIKNL 329 (397)
Q Consensus 292 ~~~~~~l~~~g~v~~L----v~lL~-~~d~dv~E~aL~aL~~L 329 (397)
+... +.+..|-+.+ ..++. ..+-+++-+|+.+|..-
T Consensus 561 ~a~~--lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp 601 (728)
T KOG4535|consen 561 PALP--LQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVP 601 (728)
T ss_pred cccc--ccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCC
Confidence 3221 3344443333 33333 24667777777655443
No 178
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=85.84 E-value=33 Score=34.79 Aligned_cols=83 Identities=13% Similarity=0.176 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHH-HHHHHHHHHHHHhcCChhcHHHHHhcCcHHHH
Q 015951 180 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE-EAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 258 (397)
Q Consensus 180 s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~-v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L 258 (397)
+....+|..++--|++-+. +|..+..|..+|....+++.+...... .-.-++.++-.++.........+.+.+-..++
T Consensus 33 ~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l~~~~~~~~ll 111 (361)
T PF07814_consen 33 SSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHLLLDRDSLRLL 111 (361)
T ss_pred CCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhhhhchhHHHHH
Confidence 3466899999999999997 689999999999999999999654432 33333333333333333444455555666676
Q ss_pred HHhhc
Q 015951 259 QDILG 263 (397)
Q Consensus 259 ~~lL~ 263 (397)
..++.
T Consensus 112 ~~Ll~ 116 (361)
T PF07814_consen 112 LKLLK 116 (361)
T ss_pred HHHhc
Confidence 77776
No 179
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=85.78 E-value=18 Score=31.70 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=50.0
Q ss_pred CCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHH-HHHhhcCC---CHHHHHHHHHHHHHHhcCC
Q 015951 180 HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSK-LMKMVKSS---FVEEAVKALYTVSSLIRNN 242 (397)
Q Consensus 180 s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~-Ll~LL~s~---~~~v~~kAl~ALS~LiR~~ 242 (397)
+.++.++..|..+|-++++|. +.++..+...+.+.. |++++... +..|+.+.+.-|-+-...+
T Consensus 50 ~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f 117 (141)
T cd03565 50 NKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAF 117 (141)
T ss_pred CCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHh
Confidence 468899999999999999997 478888888899987 99999742 3478888877776655443
No 180
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=85.41 E-value=6.1 Score=42.57 Aligned_cols=181 Identities=13% Similarity=0.104 Sum_probs=92.0
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC----CCHH
Q 015951 109 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTD 184 (397)
Q Consensus 109 ~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s----~~~~ 184 (397)
+.++-+++-..|.+.-+..|++. +.+...+..+....+-.|...+...+ . ..+..+..++++ .++.
T Consensus 381 r~~~lDal~~aGT~~av~~i~~~---I~~~~~~~~ea~~~l~~l~~~~~~Pt--~-----e~l~~l~~L~~~~~~~~~~~ 450 (618)
T PF01347_consen 381 RKIFLDALPQAGTNPAVKFIKDL---IKSKKLTDDEAAQLLASLPFHVRRPT--E-----ELLKELFELAKSPKVKNSPY 450 (618)
T ss_dssp HHHHHHHHHHH-SHHHHHHHHHH---HHTT-S-HHHHHHHHHHHHHT-------H-----HHHHHHHHHHT-HHHHT-HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH---HHcCCCCHHHHHHHHHHHHhhcCCCC--H-----HHHHHHHHHHhCccccCChh
Confidence 34444555444443333333333 33455555555555666655552222 1 123334445544 4677
Q ss_pred HHHHHHHHHHHHhcCChHHHH-----------HHHHcCcHHHHHHhhc----CCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951 185 IRKISAWILGKASQNNPLVQK-----------QVLELGALSKLMKMVK----SSFVEEAVKALYTVSSLIRNNLAGQEMF 249 (397)
Q Consensus 185 ir~~Aa~vLg~~aqNNp~~Q~-----------~vl~~g~lp~Ll~LL~----s~~~~v~~kAl~ALS~LiR~~~~~~~~f 249 (397)
++..|.-.+|+++.. .|.. .......++.|...+. ..+...+..++.||+|+ +++.
T Consensus 451 l~~ta~L~~~~lv~~--~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~~~----- 521 (618)
T PF01347_consen 451 LRETALLSLGSLVHK--YCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GHPE----- 521 (618)
T ss_dssp HHHHHHHHHHHHHHH--HHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T-GG-----
T ss_pred HHHHHHHHHHHHhCc--eeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CCch-----
Confidence 888888888887742 1222 1222346777777666 23346688899999998 3443
Q ss_pred HhcCcHHHHHHhhcCC-CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHHHHH
Q 015951 250 YVEAGDLMLQDILGNS-SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAA 325 (397)
Q Consensus 250 ~~~gGi~~L~~lL~s~-~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~dv~E~aL~a 325 (397)
.++.|..++.+. ..+..+|..|++++..++.. .+ ..+.+.+..+..+ .++++|-.|...
T Consensus 522 ----~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~-----~~--------~~v~~~l~~I~~n~~e~~EvRiaA~~~ 583 (618)
T PF01347_consen 522 ----SIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH-----CP--------EKVREILLPIFMNTTEDPEVRIAAYLI 583 (618)
T ss_dssp ----GHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT------H--------HHHHHHHHHHHH-TTS-HHHHHHHHHH
T ss_pred ----hhHHHHhHhhhccccchHHHHHHHHHHHHHhhc-----Cc--------HHHHHHHHHHhcCCCCChhHHHHHHHH
Confidence 445556666554 34567888999988877531 11 1223344444433 367888777643
No 181
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=85.29 E-value=41 Score=36.05 Aligned_cols=182 Identities=14% Similarity=0.124 Sum_probs=100.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC----CCHHH
Q 015951 110 MEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTDI 185 (397)
Q Consensus 110 ~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s----~~~~i 185 (397)
.++.+++...|.+.- ++-+.+.+.+...+..+...++-.+...+...+. ..+..+..++.+ +++-+
T Consensus 344 ~~~~Dal~~~GT~~a---~~~i~~~i~~~~~~~~ea~~~~~~~~~~~~~Pt~-------~~l~~l~~l~~~~~~~~~~~l 413 (574)
T smart00638 344 RIFLDAVAQAGTPPA---LKFIKQWIKNKKITPLEAAQLLAVLPHTARYPTE-------EILKALFELAESPEVQKQPYL 413 (574)
T ss_pred HHHHHHHHhcCCHHH---HHHHHHHHHcCCCCHHHHHHHHHHHHHhhhcCCH-------HHHHHHHHHhcCccccccHHH
Confidence 444555544443333 3344445555555655555555555554432221 134445566654 35678
Q ss_pred HHHHHHHHHHHhc----CChHHHHHHHHcCcHHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015951 186 RKISAWILGKASQ----NNPLVQKQVLELGALSKLMKMVKS----SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 257 (397)
Q Consensus 186 r~~Aa~vLg~~aq----NNp~~Q~~vl~~g~lp~Ll~LL~s----~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 257 (397)
+..|.-.+|+++. +++.+...+. ...++.|.+.|.. .+...+.-++-||+|+ +++.... .
T Consensus 414 ~~sa~l~~~~lv~~~c~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~--g~~~~i~---------~ 481 (574)
T smart00638 414 RESALLAYGSLVRRYCVNTPSCPDFVL-EELLKYLHELLQQAVSKGDEEEIQLYLKALGNA--GHPSSIK---------V 481 (574)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCChhhH-HHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc--CChhHHH---------H
Confidence 8888888887663 3443332222 2367777776653 2344567789999987 4454433 3
Q ss_pred HHHhhc-CCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC--CChHHHHHHHHHH
Q 015951 258 LQDILG-NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS--ADLDLQEKALAAI 326 (397)
Q Consensus 258 L~~lL~-s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~--~d~dv~E~aL~aL 326 (397)
|..++. +...+..+|.-|++++..++.. .+. .+-+.+..+..+ .++++|-.|..+|
T Consensus 482 l~~~l~~~~~~~~~iR~~Av~Alr~~a~~-----~p~--------~v~~~l~~i~~n~~e~~EvRiaA~~~l 540 (574)
T smart00638 482 LEPYLEGAEPLSTFIRLAAILALRNLAKR-----DPR--------KVQEVLLPIYLNRAEPPEVRMAAVLVL 540 (574)
T ss_pred HHHhcCCCCCCCHHHHHHHHHHHHHHHHh-----Cch--------HHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 344443 3334667999999999988742 111 122334444433 4778887777433
No 182
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.25 E-value=1 Score=45.52 Aligned_cols=64 Identities=13% Similarity=0.049 Sum_probs=55.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015951 188 ISAWILGKASQNNPLVQKQVLELGALSKLMKMVK--SSFVEEAVKALYTVSSLIRNNLAGQEMFYV 251 (397)
Q Consensus 188 ~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~--s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~ 251 (397)
+-.+.||.+|..+|..|+.+.+.||++.++.-.. +.++-++...++|+..++.+|..+|+.+.+
T Consensus 375 Hvir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~k 440 (478)
T KOG2676|consen 375 HVIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGK 440 (478)
T ss_pred HHHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhc
Confidence 4667899999999999999999999999997654 334678999999999999999999887654
No 183
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.13 E-value=1 Score=48.77 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=64.3
Q ss_pred hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015951 162 ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 241 (397)
Q Consensus 162 A~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~ 241 (397)
+..++..|+.-.+|.-|...--+||..|...++.++++.|..-.. ++..|+.+++++-+.||.+|++||--|..|
T Consensus 366 ~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~~~VRL~ai~aL~~Is~~ 440 (823)
T KOG2259|consen 366 EESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFNDEIEVVRLKAIFALTMISVH 440 (823)
T ss_pred ccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 446777788888888888888999999999999999999976654 467799999998889999999999888765
No 184
>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]
Probab=85.12 E-value=8.9 Score=36.75 Aligned_cols=187 Identities=18% Similarity=0.145 Sum_probs=114.6
Q ss_pred HHHHHHHHHhccCC-CCchhHHHhcCCHHH-HHH-------hcCC-----CCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Q 015951 145 SQRALQELLILVEP-IDNANDLSKLGGLSV-LVG-------QLNH-----PDTDIRKISAWILGKASQNNPLVQKQVLEL 210 (397)
Q Consensus 145 k~~AL~~L~~Lve~-iDnA~~~~~lGGl~~-Li~-------lL~s-----~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~ 210 (397)
|+.||++|..--++ .|.|-.+-..-|++. |++ +|+- ....=...|..++..++ .+|+.+..|++.
T Consensus 62 kEqaL~EL~rkreq~~dlAl~lW~s~gvmt~LLqEiisvYpiL~p~~l~~~~snRvcnaL~lLQcla-ShPetk~~Fl~A 140 (315)
T COG5209 62 KEQALDELFRKREQSPDLALELWRSDGVMTFLLQEIISVYPILSPSKLDERESNRVCNALNLLQCLA-SHPETKKVFLDA 140 (315)
T ss_pred HHHHHHHHHHHHhcCCCeeeeehhccchHHHHHHHHHhhhhccCccccCchhhhHHHHHHHHHHHHh-cCcchheeeeec
Confidence 55577777765554 467766666555443 332 2221 12233445666666665 579999999987
Q ss_pred Cc---HHHHHHhhcCCC--HHHHHHHHHHHHHHhcCChhcHHHHH-hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 211 GA---LSKLMKMVKSSF--VEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 211 g~---lp~Ll~LL~s~~--~~v~~kAl~ALS~LiR~~~~~~~~f~-~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
.. +-+.+...++.+ +-+|..++..|++++++..+-...|. ....++.+.+++..+ +.-.|.-|+|.+.-+.-
T Consensus 141 hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrIme~g--SElSktvaifI~qkil~ 218 (315)
T COG5209 141 HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRIMELG--SELSKTVAIFIFQKILG 218 (315)
T ss_pred ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHHHHhh--hHHHHHHHHHHHHHHhc
Confidence 53 222333333333 34688999999999998765555554 568899999999876 33457778888877653
Q ss_pred chhccCCCC----cchhHHh----CCcHHHHHH-hccCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951 285 CQLENMHKV----EPPLFRD----RFFLKSVVD-LTASADLDLQEKALAAIKNLLQLRTTEALVLK 341 (397)
Q Consensus 285 ~~l~~~~~~----~~~~l~~----~g~v~~Lv~-lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~ 341 (397)
++. .++.+.. ..+...++. +.+.+...+..+++++-..|+.... .|+.++
T Consensus 219 ------dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p~-aR~lL~ 277 (315)
T COG5209 219 ------DDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKPH-ARALLS 277 (315)
T ss_pred ------cchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCHh-HHHHHh
Confidence 222 1222211 123333333 3455677888999999888887653 666554
No 185
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=85.05 E-value=18 Score=38.69 Aligned_cols=177 Identities=14% Similarity=0.115 Sum_probs=101.7
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCH--HHHHHHHHHHHhccC----CCCchhHHHhcCCHHHHHHhcC----C
Q 015951 111 EIKELMEKLKTPSDAQLIQIAIDDLNNSTLSL--EDSQRALQELLILVE----PIDNANDLSKLGGLSVLVGQLN----H 180 (397)
Q Consensus 111 ~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~--e~k~~AL~~L~~Lve----~iDnA~~~~~lGGl~~Li~lL~----s 180 (397)
.+..++..+.. .+.++|+.+.+.+.++.... .-+..|+-.+..+++ +.+.......-.-++.+...|. .
T Consensus 379 ~~~~~~~~~~~-Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~ 457 (574)
T smart00638 379 LLAVLPHTARY-PTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSK 457 (574)
T ss_pred HHHHHHHhhhc-CCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhc
Confidence 34444433223 35888999999888765432 334445555554443 2222212222234555555442 3
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc-CC--CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015951 181 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SS--FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 257 (397)
Q Consensus 181 ~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~-s~--~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 257 (397)
.+.+-+..+..+||++.. | ..++.|..++. +. +..+|..|++||..+...+|.. .-+.
T Consensus 458 ~~~~~~~~~LkaLGN~g~--~---------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~--------v~~~ 518 (574)
T smart00638 458 GDEEEIQLYLKALGNAGH--P---------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK--------VQEV 518 (574)
T ss_pred CCchheeeHHHhhhccCC--h---------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH--------HHHH
Confidence 566678888999998864 4 34566666665 22 3568999999999887666553 3345
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHH
Q 015951 258 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKA 322 (397)
Q Consensus 258 L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~a 322 (397)
|..++.+...+..+|..|..++-.. +|. ...+..++..+..+ +..|.--+
T Consensus 519 l~~i~~n~~e~~EvRiaA~~~lm~t--------~P~-------~~~l~~ia~~l~~E~~~QV~sfv 569 (574)
T smart00638 519 LLPIYLNRAEPPEVRMAAVLVLMET--------KPS-------VALLQRIAELLNKEPNLQVASFV 569 (574)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhc--------CCC-------HHHHHHHHHHHhhcCcHHHHHHh
Confidence 6777777656667777665554432 232 24556666666554 44444333
No 186
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=85.03 E-value=2.5 Score=47.43 Aligned_cols=106 Identities=17% Similarity=0.144 Sum_probs=82.6
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC---HHHHHHHHHHHHHHhcCChhcH
Q 015951 170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQ 246 (397)
Q Consensus 170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~---~~v~~kAl~ALS~LiR~~~~~~ 246 (397)
.+|.|++.|.-++..+|..+..+|.....-.+..+..-+.. .+|.++.+=++.+ ..||.-|+.++..+.|--|...
T Consensus 910 LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~T-lvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~ 988 (1030)
T KOG1967|consen 910 LLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHLST-LVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKS 988 (1030)
T ss_pred HHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHHhH-HHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcc
Confidence 56777899999999999999999999988777777766553 7899988877654 4689999999999999666554
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015951 247 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 278 (397)
Q Consensus 247 ~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~l 278 (397)
-.-+.-..+..|..+|.++ ...+|..|+..
T Consensus 989 l~~fr~~Vl~al~k~LdDk--KRlVR~eAv~t 1018 (1030)
T KOG1967|consen 989 LLSFRPLVLRALIKILDDK--KRLVRKEAVDT 1018 (1030)
T ss_pred cccccHHHHHHhhhccCcH--HHHHHHHHHHH
Confidence 4444566788899999876 34466666544
No 187
>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=84.85 E-value=1.4 Score=44.15 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=68.5
Q ss_pred CchhHHHhc--CCHHHHHHhcCCCCHH-HHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHH
Q 015951 160 DNANDLSKL--GGLSVLVGQLNHPDTD-IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVS 236 (397)
Q Consensus 160 DnA~~~~~l--GGl~~Li~lL~s~~~~-ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS 236 (397)
+|+..|.+- .-+..|..+|++.++. .-+-||.=|+..+.--|+....+.++|+=..++.|++++++.++-.|+.|+-
T Consensus 345 ~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q 424 (432)
T COG5231 345 TNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQ 424 (432)
T ss_pred hhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHH
Confidence 566666654 3577888999887776 6778999999999999999999999999999999999999999988888887
Q ss_pred HHhc
Q 015951 237 SLIR 240 (397)
Q Consensus 237 ~LiR 240 (397)
.++.
T Consensus 425 ~~i~ 428 (432)
T COG5231 425 TCIS 428 (432)
T ss_pred HHHh
Confidence 6653
No 188
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=84.83 E-value=6.5 Score=33.95 Aligned_cols=92 Identities=21% Similarity=0.186 Sum_probs=70.0
Q ss_pred HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHH
Q 015951 229 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 308 (397)
Q Consensus 229 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 308 (397)
......|+-+++..+.+.. .++..|..-|+++ ++.++..|+.++-.++. +.++.+...+.+..++..++
T Consensus 18 ~~~il~icd~I~~~~~~~k-----~a~raL~krl~~~--n~~vql~AL~lLd~~vk----Ncg~~f~~~i~s~~fl~~l~ 86 (133)
T cd03561 18 WALNLELCDLINLKPNGPK-----EAARAIRKKIKYG--NPHVQLLALTLLELLVK----NCGKPFHLQVADKEFLLELV 86 (133)
T ss_pred HHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----hCChHHHHHHhhHHHHHHHH
Confidence 4566778888877644333 2456777778876 56789999999999887 35666777777878888899
Q ss_pred HhccC---CChHHHHHHHHHHHHHhc
Q 015951 309 DLTAS---ADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 309 ~lL~~---~d~dv~E~aL~aL~~L~~ 331 (397)
.++.. .+..++++++..+.+...
T Consensus 87 ~l~~~~~~~~~~Vk~kil~ll~~W~~ 112 (133)
T cd03561 87 KIAKNSPKYDPKVREKALELILAWSE 112 (133)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99875 488999999998888774
No 189
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=84.63 E-value=8.5 Score=44.39 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=101.4
Q ss_pred cCCHHHHH-HhcC----CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcC
Q 015951 168 LGGLSVLV-GQLN----HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRN 241 (397)
Q Consensus 168 lGGl~~Li-~lL~----s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~-s~~~~v~~kAl~ALS~LiR~ 241 (397)
+|-+.|++ ...+ .++|++|..|.-++|.++- .-..|.+ -.+|.|+.++. ++++-+|..++-|+|-++--
T Consensus 917 Lg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~----iSa~fce-s~l~llftimeksp~p~IRsN~VvalgDlav~ 991 (1251)
T KOG0414|consen 917 LGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMC----ISAEFCE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVR 991 (1251)
T ss_pred HHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhh----hhHHHHH-HHHHHHHHHHhcCCCceeeecchheccchhhh
Confidence 35566655 5553 3689999999999999873 1112222 36899999998 55667899999999998877
Q ss_pred ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHH
Q 015951 242 NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEK 321 (397)
Q Consensus 242 ~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~ 321 (397)
+|.-.+.+- +.|-.-|.+. +..+|+.|.-.+++|... ..+.-.|.+.-++-+|..++..+.+-
T Consensus 992 fpnlie~~T-----~~Ly~rL~D~--~~~vRkta~lvlshLILn----------dmiKVKGql~eMA~cl~D~~~~Isdl 1054 (1251)
T KOG0414|consen 992 FPNLIEPWT-----EHLYRRLRDE--SPSVRKTALLVLSHLILN----------DMIKVKGQLSEMALCLEDPNAEISDL 1054 (1251)
T ss_pred cccccchhh-----HHHHHHhcCc--cHHHHHHHHHHHHHHHHh----------hhhHhcccHHHHHHHhcCCcHHHHHH
Confidence 877666553 3455556665 556899999999999852 23445688888888888888888877
Q ss_pred HHHHHHHHhc
Q 015951 322 ALAAIKNLLQ 331 (397)
Q Consensus 322 aL~aL~~L~~ 331 (397)
|=.....|+.
T Consensus 1055 Ak~FF~Els~ 1064 (1251)
T KOG0414|consen 1055 AKSFFKELSS 1064 (1251)
T ss_pred HHHHHHHhhh
Confidence 7744444443
No 190
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=84.58 E-value=24 Score=39.83 Aligned_cols=126 Identities=16% Similarity=0.105 Sum_probs=90.5
Q ss_pred HHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCC----HHHHHHHHHHHHHHhcCChH-H
Q 015951 129 QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD----TDIRKISAWILGKASQNNPL-V 203 (397)
Q Consensus 129 k~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~----~~ir~~Aa~vLg~~aqNNp~-~ 203 (397)
-..+.++...+.+|.....+.+-++++++..+|...++. --+|.+++.|..+. +.+...|+.+|.++..|-|. .
T Consensus 574 P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e-~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL 652 (1005)
T KOG2274|consen 574 PLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE-RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPL 652 (1005)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH-HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCc
Confidence 346666666655666666678888888886676666654 48999999998876 89999999999999988543 2
Q ss_pred HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHH
Q 015951 204 QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 256 (397)
Q Consensus 204 Q~~vl~~g~lp~Ll~LL~-s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~ 256 (397)
-+-++. -++|++.++.- +++.++-..+--+|++++...++........+|+.
T Consensus 653 ~~~l~~-~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 653 PNLLIC-YAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred cHHHHH-HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence 233333 37899998765 44567777888899998887766555555555655
No 191
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.24 E-value=3.5 Score=37.85 Aligned_cols=69 Identities=16% Similarity=0.132 Sum_probs=58.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcC---ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKASQN---NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 247 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqN---Np~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~ 247 (397)
|+.++++.-+++..+|..|..+|+.+.+. ||. .++|.|+.|..++++.++.+|...+..+...|+.-..
T Consensus 10 l~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~--------~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 10 LKNILELCLSSDDSVRLAALQVLELILRQGLVNPK--------QCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH--------HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 56778888899999999999999999865 662 3799999999999999999999999999877765433
No 192
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.13 E-value=35 Score=36.15 Aligned_cols=119 Identities=18% Similarity=0.254 Sum_probs=72.7
Q ss_pred hHHHhcCCHHHHHHhc----CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHH
Q 015951 163 NDLSKLGGLSVLVGQL----NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSS 237 (397)
Q Consensus 163 ~~~~~lGGl~~Li~lL----~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll-~LL~s~~~~v~~kAl~ALS~ 237 (397)
+.+-+.|.+.-++..| .+|+..+|..|+.+||+.+..-|.--..... -.+..++ .|.+..+.+|.-.|+.+|-.
T Consensus 248 ~~l~~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~ 326 (533)
T KOG2032|consen 248 KELDKTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTM 326 (533)
T ss_pred ccccccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3344777777666544 4578899999999999999885532222222 2334444 44444456776666666665
Q ss_pred HhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 238 LIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 238 LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
++-.-..-.-.++=.+..--+..++.+. +.++|..|.+++..|+-
T Consensus 327 v~~~~~~~~l~~~~l~ialrlR~l~~se--~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 327 VLEKASNDDLESYLLNIALRLRTLFDSE--DDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHHhhhhcchhhhchhHHHHHHHHHHhc--ChhhhhhHHHHHHHHHH
Confidence 5432111122233334555667777775 45688999999999975
No 193
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=84.12 E-value=7.1 Score=32.34 Aligned_cols=93 Identities=13% Similarity=0.102 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh
Q 015951 184 DIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL 262 (397)
Q Consensus 184 ~ir~~Aa~vLg~~aqNNp~~Q~~vl-~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL 262 (397)
+||.+|..=|-+=-.++--+-..+. ....+..|+..+..++......++.-|+.+++ +|++...+.+.|+...|.++-
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHH
Confidence 6788887666555545444444444 55678899999998887778888999999877 578888899999999987776
Q ss_pred cCCCccHHHHHHHHHHH
Q 015951 263 GNSSFEIRLHRKAVSLV 279 (397)
Q Consensus 263 ~s~~~d~klr~kA~~lL 279 (397)
... +..++...-.++
T Consensus 81 ~~~--~~~~~~~id~il 95 (98)
T PF14726_consen 81 PNV--EPNLQAEIDEIL 95 (98)
T ss_pred hcC--CHHHHHHHHHHH
Confidence 543 444555444333
No 194
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.07 E-value=59 Score=36.75 Aligned_cols=190 Identities=13% Similarity=0.080 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHH
Q 015951 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 203 (397)
Q Consensus 124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~ 203 (397)
+.+...+++..+.++.+ .-|..++..|..++++-+-+..+..-+.+...+..|++.++=|=-+|...+.++|.-
T Consensus 725 ~~e~~qeai~sl~d~qv--pik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev---- 798 (982)
T KOG4653|consen 725 DIEPLQEAISSLHDDQV--PIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV---- 798 (982)
T ss_pred cHHHHHHHHHHhcCCcc--cchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh----
Confidence 34556667777766643 358889999999999888777888889999999999999999988999888888753
Q ss_pred HHHHHHcCcHHHHHH-hhcCCC---HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015951 204 QKQVLELGALSKLMK-MVKSSF---VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 279 (397)
Q Consensus 204 Q~~vl~~g~lp~Ll~-LL~s~~---~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL 279 (397)
.....+|.|.. ..++.+ .+.+-+.=-||..+++--.+-...+.+ --+...+...+++ +...|.-++..+
T Consensus 799 ----y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrep--d~~~RaSS~a~l 871 (982)
T KOG4653|consen 799 ----YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREP--DHEFRASSLANL 871 (982)
T ss_pred ----cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCc--hHHHHHhHHHHH
Confidence 44678999987 444332 233444446666655543332222222 1122223333444 667899999999
Q ss_pred HHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcC
Q 015951 280 GDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 280 ~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~ 332 (397)
+.||.-- .-..-+++. .+...++.+.+.+ .+-+|..|...+..+...
T Consensus 872 g~Lcq~~----a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~ 919 (982)
T KOG4653|consen 872 GQLCQLL----AFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNG 919 (982)
T ss_pred HHHHHHH----hhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhc
Confidence 9998510 000111222 2344455555554 567888888888887764
No 195
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.82 E-value=29 Score=39.47 Aligned_cols=138 Identities=12% Similarity=0.000 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcC------CCHHH--HHHHHHHHHHHh---cCChh---cHHHHHhc
Q 015951 187 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS------SFVEE--AVKALYTVSSLI---RNNLA---GQEMFYVE 252 (397)
Q Consensus 187 ~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s------~~~~v--~~kAl~ALS~Li---R~~~~---~~~~f~~~ 252 (397)
.+|..++-+++..- -++ .=.|.++.+++++.+ +.... +..|+.++|+++ ....+ ..+.|+
T Consensus 390 ~Aa~~~l~~~~~KR--~ke--~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~fl-- 463 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKR--GKE--TLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFL-- 463 (1010)
T ss_pred HHHHHHHHHHHHhc--chh--hhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHH--
Confidence 46777777777532 011 112567778888872 22222 345666666654 33322 223333
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc-CCChHHHHHHHHHHHHHhc
Q 015951 253 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 253 gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~-~~d~dv~E~aL~aL~~L~~ 331 (397)
.+.+...++++. --+|.+|||.++.+++. ++...-.-....+.+...|. +.+..|+-.|+.||..+..
T Consensus 464 --v~hVfP~f~s~~--g~Lrarac~vl~~~~~~-------df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~ 532 (1010)
T KOG1991|consen 464 --VNHVFPEFQSPY--GYLRARACWVLSQFSSI-------DFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFIS 532 (1010)
T ss_pred --HHHhhHhhcCch--hHHHHHHHHHHHHHHhc-------cCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHh
Confidence 333444456663 34899999999999852 22222222234556666666 6678999999999999998
Q ss_pred CChHHHHHHH
Q 015951 332 LRTTEALVLK 341 (397)
Q Consensus 332 ~~~~~r~~~~ 341 (397)
+.+.....++
T Consensus 533 ~~~~~~e~~~ 542 (1010)
T KOG1991|consen 533 NQEQADEKVS 542 (1010)
T ss_pred cchhhhhhHh
Confidence 8654434344
No 196
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=83.45 E-value=44 Score=33.40 Aligned_cols=160 Identities=12% Similarity=0.058 Sum_probs=109.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhc-CChHHHHHHHHc-----CcHHHHHHhhcCC--C--------HHHHHHH-HH
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKASQ-NNPLVQKQVLEL-----GALSKLMKMVKSS--F--------VEEAVKA-LY 233 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aq-NNp~~Q~~vl~~-----g~lp~Ll~LL~s~--~--------~~v~~kA-l~ 233 (397)
+..+...|++..+.+...+..++..++. ++...-..++.. ..+|+|+..=... . ..+|... -+
T Consensus 58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F 137 (330)
T PF11707_consen 58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF 137 (330)
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence 7778899999999999999999999999 887777777754 2444444332211 1 1566655 46
Q ss_pred HHHHHhcCChhcHHHHHhcCc-HHHHHHhhcCCCccHHHHHHHHHHHHH-HhhchhccCCCCcchhHHhCCcHHHHHHhc
Q 015951 234 TVSSLIRNNLAGQEMFYVEAG-DLMLQDILGNSSFEIRLHRKAVSLVGD-LAKCQLENMHKVEPPLFRDRFFLKSVVDLT 311 (397)
Q Consensus 234 ALS~LiR~~~~~~~~f~~~gG-i~~L~~lL~s~~~d~klr~kA~~lL~~-L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL 311 (397)
+|+-+...++.....++..++ +..+.+-|..+ +..+-......+.. +..+. .-....+-.+.....+..++.+-
T Consensus 138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D--~~~~v~~iL~~l~~~Vl~~~--~v~r~~K~~~fn~~~L~~l~~Ly 213 (330)
T PF11707_consen 138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKD--PPETVILILETLKDKVLKDS--SVSRSTKCKLFNEWTLSQLASLY 213 (330)
T ss_pred HHHHHccCCHHHHHHHHHcCchHHHHHhcccCC--CHHHHHHHHHHHHHHhccCC--CCChhhhhhhcCHHHHHHHHHHh
Confidence 666666667777888887665 55555556654 44566666666653 44311 11234555677778899999988
Q ss_pred cCCCh----HHHHHHHHHHHHHhcCCh
Q 015951 312 ASADL----DLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 312 ~~~d~----dv~E~aL~aL~~L~~~~~ 334 (397)
..++. .+.+.+-..|..+++++.
T Consensus 214 ~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 214 SRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred cccCCcccchHHHHHHHHHHHHhcCCC
Confidence 87777 889999988888887653
No 197
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=83.30 E-value=4.1 Score=42.93 Aligned_cols=149 Identities=17% Similarity=0.186 Sum_probs=86.7
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh----cCChh---cHHHHHh
Q 015951 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI----RNNLA---GQEMFYV 251 (397)
Q Consensus 179 ~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~Li----R~~~~---~~~~f~~ 251 (397)
.|.+.-++..|.+.++..+-+.---++...-.++...++..+.++.-.+|.|+.|++|+|. -+-|. .+..|
T Consensus 401 d~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~-- 478 (728)
T KOG4535|consen 401 DSKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERF-- 478 (728)
T ss_pred chHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHH--
Confidence 4455568888888888887655545555555567777777777766678999999999863 23333 22333
Q ss_pred cCcHHH---HHHhhcCCCccHHHHHHHHHHHHHHhhchhc-cCCCCcchhHHhCCcHHHHHHh-ccCCChHHHHHHHHHH
Q 015951 252 EAGDLM---LQDILGNSSFEIRLHRKAVSLVGDLAKCQLE-NMHKVEPPLFRDRFFLKSVVDL-TASADLDLQEKALAAI 326 (397)
Q Consensus 252 ~gGi~~---L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~-~~~~~~~~~l~~~g~v~~Lv~l-L~~~d~dv~E~aL~aL 326 (397)
-|.-+ +.....++.+..|++.+|+..|.++..- +. -....+.+ ..+|-+..+... +......|+=++..++
T Consensus 479 -sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv-lq~i~~~~~~e--~~~~~~~~l~~~v~~~~~~kV~WNaCya~ 554 (728)
T KOG4535|consen 479 -SGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF-LQPIEKPTFAE--IIEESIQALISTVLTEAAMKVRWNACYAM 554 (728)
T ss_pred -HHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH-HHHhhhccHHH--HHHHHHHhcccceecccccccchHHHHHH
Confidence 23322 2222233334568999999999999741 10 00111111 122222222222 2233567777777777
Q ss_pred HHHhcCC
Q 015951 327 KNLLQLR 333 (397)
Q Consensus 327 ~~L~~~~ 333 (397)
+||.++.
T Consensus 555 gNLfkn~ 561 (728)
T KOG4535|consen 555 GNLFKNP 561 (728)
T ss_pred HHhhcCc
Confidence 7777664
No 198
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=83.23 E-value=3.8 Score=36.62 Aligned_cols=105 Identities=19% Similarity=0.105 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015951 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 202 (397)
Q Consensus 124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~ 202 (397)
+++...++++.|.++... +....++-|.+-|-+ .|-|- -+|.+.+..++.-=.+...--+..|...||++--.-
T Consensus 20 ~a~Qt~~lielLk~~~~~--~~~~lldLL~~RV~PGVD~AA-~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGY-- 94 (154)
T PF11791_consen 20 NAEQTAELIELLKNPPAG--EEAFLLDLLTNRVPPGVDEAA-YVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGY-- 94 (154)
T ss_dssp -HHHHHHHHHHHHS--TT---HHHHHHHHHHSS--TT-HHH-HHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SST--
T ss_pred CHHHHHHHHHHHhCCCCc--cHHHHHHHHHhcCCCCCChHH-HHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCC--
Confidence 567777788888777543 444566666666654 45443 345555555553211122223677888888875321
Q ss_pred HHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015951 203 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 242 (397)
Q Consensus 203 ~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~ 242 (397)
-+.+|+.+|.+++.++...|.-+|++.+--|
T Consensus 95 ---------NV~~LI~~L~~~d~~lA~~Aa~aLk~TlLvy 125 (154)
T PF11791_consen 95 ---------NVQPLIDLLKSDDEELAEEAAEALKNTLLVY 125 (154)
T ss_dssp ---------THHHHHHGG--G-TTTHHHHHHHHHT--TTC
T ss_pred ---------cHHHHHHHHcCCcHHHHHHHHHHHHhhHHHH
Confidence 2889999998888888888999998865443
No 199
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=83.11 E-value=5.1 Score=43.21 Aligned_cols=167 Identities=13% Similarity=0.055 Sum_probs=94.1
Q ss_pred CHHHHHHHHHHHhhCCC--CCHHHHHHHHHHHHhccCCCCch----------hHHHhcCCHHHHHHhcC----CCCHHHH
Q 015951 123 SDAQLIQIAIDDLNNST--LSLEDSQRALQELLILVEPIDNA----------NDLSKLGGLSVLVGQLN----HPDTDIR 186 (397)
Q Consensus 123 ~d~~lmk~~i~~L~~~~--~s~e~k~~AL~~L~~Lve~iDnA----------~~~~~lGGl~~Li~lL~----s~~~~ir 186 (397)
.+.++++.+.+.+..+. .++.-+..|+-.+..+++..-.. ...+.-.-++.+...|. ..+.+-+
T Consensus 428 Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 507 (618)
T PF01347_consen 428 PTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEK 507 (618)
T ss_dssp --HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHH
T ss_pred CCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHH
Confidence 45777887777775432 23344555555555544321111 11222234455555443 4667888
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCC---CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc
Q 015951 187 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS---FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG 263 (397)
Q Consensus 187 ~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~---~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~ 263 (397)
..+..+||++-. | ..++.|..++... +..+|..|++|+..+...+|.- ..+.|..++.
T Consensus 508 ~~~LkaLgN~g~--~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~--------v~~~l~~I~~ 568 (618)
T PF01347_consen 508 IVYLKALGNLGH--P---------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK--------VREILLPIFM 568 (618)
T ss_dssp HHHHHHHHHHT---G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH--------HHHHHHHHHH
T ss_pred HHHHHHhhccCC--c---------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH--------HHHHHHHHhc
Confidence 999999999853 3 5789999998877 4578999999999887666643 2355678887
Q ss_pred CCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHH
Q 015951 264 NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKAL 323 (397)
Q Consensus 264 s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL 323 (397)
+...+..+|..|..+|-. .+|. ...+..+...+..+ +..|.--+.
T Consensus 569 n~~e~~EvRiaA~~~lm~--------~~P~-------~~~l~~i~~~l~~E~~~QV~sfv~ 614 (618)
T PF01347_consen 569 NTTEDPEVRIAAYLILMR--------CNPS-------PSVLQRIAQSLWNEPSNQVASFVY 614 (618)
T ss_dssp -TTS-HHHHHHHHHHHHH--------T----------HHHHHHHHHHHTT-S-HHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHh--------cCCC-------HHHHHHHHHHHhhCchHHHHHHHH
Confidence 765667777766554433 1232 24566677777554 444444443
No 200
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=83.05 E-value=13 Score=33.35 Aligned_cols=145 Identities=17% Similarity=0.157 Sum_probs=85.9
Q ss_pred CHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015951 170 GLSVLVGQLNH-PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 248 (397)
Q Consensus 170 Gl~~Li~lL~s-~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~ 248 (397)
.++.|+++|+. .+.++|..|.++||.+-.=.|.-.+.+....- .-. -..++.......+ ...+..+..+.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~--~~~--~~~~~~~~~~~~l-----~~~~~~~~~ee 81 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD--SKS--SENSNDESTDISL-----PMMGISPSSEE 81 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC--ccc--cccccccchhhHH-----hhccCCCchHH
Confidence 35667778854 56999999999999997767754443222111 000 0000011111111 11223345678
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015951 249 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 328 (397)
Q Consensus 249 f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~ 328 (397)
|+-...+..|+++|++++- ..-...++.++.++... .+....+.+- -+++.++..++..+...+|..+.-|..
T Consensus 82 ~y~~vvi~~L~~iL~D~sL-s~~h~~vv~ai~~If~~----l~~~cv~~L~--~viP~~l~~i~~~~~~~~e~~~~qL~~ 154 (160)
T PF11865_consen 82 YYPTVVINALMRILRDPSL-SSHHTAVVQAIMYIFKS----LGLKCVPYLP--QVIPIFLRVIRTCPDSLREFYFQQLAD 154 (160)
T ss_pred HHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHHh----cCcCchhHHH--HHhHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 8888889999999987743 23455677777777642 2333344442 467778888886666888888777766
Q ss_pred Hh
Q 015951 329 LL 330 (397)
Q Consensus 329 L~ 330 (397)
|.
T Consensus 155 lv 156 (160)
T PF11865_consen 155 LV 156 (160)
T ss_pred HH
Confidence 65
No 201
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=83.01 E-value=13 Score=36.40 Aligned_cols=112 Identities=17% Similarity=0.054 Sum_probs=77.3
Q ss_pred CcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015951 211 GALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 289 (397)
Q Consensus 211 g~lp~Ll-~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~ 289 (397)
+.+..|+ .-+.+.+..+|..|+-++|-.+--+..... .-+..+.+.+..+ +..++..|+.++.++....
T Consensus 26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~--- 95 (298)
T PF12719_consen 26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAK-----EHLPLFLQALQKD--DEEVKITALKALFDLLLTH--- 95 (298)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHc---
Confidence 4555555 567777889999999998854443332222 2356677777554 5679999999999998631
Q ss_pred CCCCcch-------hHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951 290 MHKVEPP-------LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 290 ~~~~~~~-------~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 333 (397)
+....+ ......+.+.+...+.+.+++++..|..++..|.-.+
T Consensus 96 -g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~ 145 (298)
T PF12719_consen 96 -GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSG 145 (298)
T ss_pred -CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Confidence 111111 1223567778888899999999999999999887654
No 202
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=82.66 E-value=27 Score=40.09 Aligned_cols=141 Identities=16% Similarity=0.106 Sum_probs=83.8
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc---HHHHHh--cCc
Q 015951 180 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---QEMFYV--EAG 254 (397)
Q Consensus 180 s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~---~~~f~~--~gG 254 (397)
|=++.+|+.|+++|..++.--|+ .+..+.+|+|+....+.+...|.-+.-|.+.++.+.... ...+.+ -.|
T Consensus 555 HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~~~~~l~~~~~~l~e~~i~~ 630 (1133)
T KOG1943|consen 555 HWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIGALRKLEPVIKGLDENRIAG 630 (1133)
T ss_pred cccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHHHhhhhhhhhhhhHHHHhhh
Confidence 35899999999999999886663 455678999999999888877776666666655432211 111111 123
Q ss_pred HHHHHHh-----hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015951 255 DLMLQDI-----LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 329 (397)
Q Consensus 255 i~~L~~l-----L~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 329 (397)
+.-++.- ++-+ .....+.-.+..+..+.. ++......+...+|-..+.+.+..++ .+++.+..++..+
T Consensus 631 l~~ii~~~~~~~~~rg-~~~lmr~~~~~~Ie~~s~-----s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l 703 (1133)
T KOG1943|consen 631 LLSIIPPICDRYFYRG-QGTLMRQATLKFIEQLSL-----SKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDL 703 (1133)
T ss_pred hhhhccHHHHHHhccc-hHHHHHHHHHHHHHHhhh-----ccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHH
Confidence 2111211 1111 112234444455555543 23444445555667777777775555 7778888777777
Q ss_pred hc
Q 015951 330 LQ 331 (397)
Q Consensus 330 ~~ 331 (397)
.+
T Consensus 704 ~s 705 (1133)
T KOG1943|consen 704 VS 705 (1133)
T ss_pred HH
Confidence 63
No 203
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=82.20 E-value=6.2 Score=32.20 Aligned_cols=86 Identities=20% Similarity=0.165 Sum_probs=63.9
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
+..++++..+.++.. -.|..+|..|..+++.-+ ......-+.+..++..|+++++=|=-+|..+++.++.-.|.
T Consensus 3 ~~~~~al~~L~dp~~--PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~--- 76 (92)
T PF10363_consen 3 ETLQEALSDLNDPLP--PVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD--- 76 (92)
T ss_pred HHHHHHHHHccCCCc--chHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH---
Confidence 456777788877753 478899999999998877 11122225667777899999999999999999999987773
Q ss_pred HHHHcCcHHHHHHhhcC
Q 015951 206 QVLELGALSKLMKMVKS 222 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s 222 (397)
.++|.|++...+
T Consensus 77 -----~vl~~L~~~y~~ 88 (92)
T PF10363_consen 77 -----EVLPILLDEYAD 88 (92)
T ss_pred -----HHHHHHHHHHhC
Confidence 356777665544
No 204
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=81.92 E-value=64 Score=35.06 Aligned_cols=110 Identities=13% Similarity=0.067 Sum_probs=79.4
Q ss_pred CHHHHHHhcCC--CC-----HHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015951 170 GLSVLVGQLNH--PD-----TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 242 (397)
Q Consensus 170 Gl~~Li~lL~s--~~-----~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~ 242 (397)
.+|.|+.+|.. ++ =.+-..|..||.-.+|+ +.+.+++. ++..+=+-+.+++=.-|..|+-|++++..+-
T Consensus 322 vlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~---~gd~i~~p-Vl~FvEqni~~~~w~nreaavmAfGSvm~gp 397 (858)
T COG5215 322 VLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL---KGDKIMRP-VLGFVEQNIRSESWANREAAVMAFGSVMHGP 397 (858)
T ss_pred HHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH---hhhHhHHH-HHHHHHHhccCchhhhHHHHHHHhhhhhcCc
Confidence 68888999854 22 24788899999988886 44555543 4444556666666566889999999998664
Q ss_pred hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 243 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 243 ~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
...+..-+-...++.+...+.++ -.-++..++|+++.++.+
T Consensus 398 ~~~~lT~~V~qalp~i~n~m~D~--~l~vk~ttAwc~g~iad~ 438 (858)
T COG5215 398 CEDCLTKIVPQALPGIENEMSDS--CLWVKSTTAWCFGAIADH 438 (858)
T ss_pred cHHHHHhhHHhhhHHHHHhcccc--eeehhhHHHHHHHHHHHH
Confidence 44444445577888888888865 455788999999999875
No 205
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=81.74 E-value=47 Score=33.57 Aligned_cols=138 Identities=10% Similarity=0.033 Sum_probs=103.8
Q ss_pred HHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC---cHHHHHHhhc
Q 015951 145 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG---ALSKLMKMVK 221 (397)
Q Consensus 145 k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g---~lp~Ll~LL~ 221 (397)
-..+-.-|.+++..-..|.-+....-+..+.++...++-+|-.-|...+..+-..|+..-..++..+ .+...-+|+.
T Consensus 140 al~~g~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~ 219 (335)
T PF08569_consen 140 ALNCGDMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLE 219 (335)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3445566666776655666666666777788889999999999999999999999998888887765 4678889999
Q ss_pred CCCHHHHHHHHHHHHHHhcCCh--hcHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 222 SSFVEEAVKALYTVSSLIRNNL--AGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 222 s~~~~v~~kAl~ALS~LiR~~~--~~~~~f~~-~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
+++=-.++.++--|+.++-+.. .....++. ..-+..++.+|+++ ...+|..|.....=++.
T Consensus 220 s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~--sk~Iq~eAFhvFKvFVA 283 (335)
T PF08569_consen 220 SSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDK--SKNIQFEAFHVFKVFVA 283 (335)
T ss_dssp -SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S---HHHHHHHHHHHHHHHH
T ss_pred CCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCc--chhhhHHHHHHHHHHHh
Confidence 9887789999999999886532 33344543 35688889999987 44588899888887765
No 206
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=81.70 E-value=15 Score=40.70 Aligned_cols=156 Identities=15% Similarity=0.102 Sum_probs=98.3
Q ss_pred cCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhc
Q 015951 168 LGGLSVLVG-QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAG 245 (397)
Q Consensus 168 lGGl~~Li~-lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~L-L~s~~~~v~~kAl~ALS~LiR~~~~~ 245 (397)
.+...++|. ++...+|-+|......++-+--.. -..++|..|+.. +++.++.||+.|+.||+-++-..|..
T Consensus 517 qe~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT-------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~ 589 (929)
T KOG2062|consen 517 QEDADPLIKELLRDKDPILRYGGMYTLALAYVGT-------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ 589 (929)
T ss_pred hhhhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc-------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh
Confidence 456778884 667889999998877776543110 123678889988 45556899999999999877666653
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHH
Q 015951 246 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALA 324 (397)
Q Consensus 246 ~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~ 324 (397)
. +..+.+|... .+.-+|--|+.+|.--|.. ...++.+ .|.+.|.++ ..-||.-|+-
T Consensus 590 ~---------~s~V~lLses-~N~HVRyGaA~ALGIaCAG------tG~~eAi-------~lLepl~~D~~~fVRQgAlI 646 (929)
T KOG2062|consen 590 L---------PSTVSLLSES-YNPHVRYGAAMALGIACAG------TGLKEAI-------NLLEPLTSDPVDFVRQGALI 646 (929)
T ss_pred c---------hHHHHHHhhh-cChhhhhhHHHHHhhhhcC------CCcHHHH-------HHHhhhhcChHHHHHHHHHH
Confidence 3 2335556533 2445888999999987752 2222221 233333333 4456677777
Q ss_pred HHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHhhh
Q 015951 325 AIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVML 362 (397)
Q Consensus 325 aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l~~ 362 (397)
++.-+...- ...+-|.+...|+++.....
T Consensus 647 a~amIm~Q~---------t~~~~pkv~~frk~l~kvI~ 675 (929)
T KOG2062|consen 647 ALAMIMIQQ---------TEQLCPKVNGFRKQLEKVIN 675 (929)
T ss_pred HHHHHHHhc---------ccccCchHHHHHHHHHHHhh
Confidence 776655321 22345556777777777664
No 207
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=81.53 E-value=23 Score=39.29 Aligned_cols=122 Identities=18% Similarity=0.130 Sum_probs=83.5
Q ss_pred HHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccC
Q 015951 234 TVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS 313 (397)
Q Consensus 234 ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~ 313 (397)
+|.++.-.+|.....|++.||...+..++.+- +...+++++..++.+++... ...+....+..-.+ ..+-.+++.
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f-~~~~~~~~il~~l~n~~~~~---~~~~~~~~~~~~~~-~~f~~~~~~ 568 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESF-DNEELHRKILGLLGNLAEVL---ELRELLMIFEFIDF-SVFKVLLNK 568 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHh---hhhhhhhHHHHHHH-HHHHHHHhh
Confidence 88899999999999999999999999999976 45569999999999998632 11222222222221 122224444
Q ss_pred C-ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHhhhhh
Q 015951 314 A-DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVMLEE 364 (397)
Q Consensus 314 ~-d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l~~~e 364 (397)
- +.+.-..+...|..+..+++. ....+.-+++.+++...+.......
T Consensus 569 w~~~ersY~~~siLa~ll~~~~~----~~~~~~r~~~~~~l~e~i~~~~~~~ 616 (699)
T KOG3665|consen 569 WDSIERSYNAASILALLLSDSEK----TTECVFRNSVNELLVEAISRWLTSE 616 (699)
T ss_pred cchhhHHHHHHHHHHHHHhCCCc----CccccchHHHHHHHHHHhhccCccc
Confidence 4 448889999999999988653 1212333667777777777665533
No 208
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=81.38 E-value=10 Score=33.42 Aligned_cols=93 Identities=16% Similarity=0.169 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHH
Q 015951 228 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV 307 (397)
Q Consensus 228 ~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~L 307 (397)
-....-.|+-+++..+.+.. .++..|..=|+++ ++.++..|+.+|-.++. +.+..+...+.+.+++..|
T Consensus 21 dw~~ileicD~In~~~~~~k-----~a~ral~krl~~~--n~~vql~AL~LLe~~vk----NCG~~fh~evas~~fl~~l 89 (142)
T cd03569 21 DLASILEICDMIRSKDVQPK-----YAMRALKKRLLSK--NPNVQLYALLLLESCVK----NCGTHFHDEVASREFMDEL 89 (142)
T ss_pred CHHHHHHHHHHHhCCCCCHH-----HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH----HCCHHHHHHHhhHHHHHHH
Confidence 34555667777776544322 4566777778776 56789999999999886 3556677778889999999
Q ss_pred HHhcc-CCChHHHHHHHHHHHHHhc
Q 015951 308 VDLTA-SADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 308 v~lL~-~~d~dv~E~aL~aL~~L~~ 331 (397)
+.++. ..++.|+++++..+.+-+.
T Consensus 90 ~~l~~~~~~~~Vk~kil~li~~W~~ 114 (142)
T cd03569 90 KDLIKTTKNEEVRQKILELIQAWAL 114 (142)
T ss_pred HHHHcccCCHHHHHHHHHHHHHHHH
Confidence 99987 4588999999988887763
No 209
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=80.66 E-value=54 Score=35.70 Aligned_cols=106 Identities=23% Similarity=0.181 Sum_probs=71.9
Q ss_pred hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015951 163 NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 242 (397)
Q Consensus 163 ~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~ 242 (397)
.+|+. |-+.-++..+.+++..||.+.+.+|+.++-+-.+.- ..+-.|.+.+|.+-+-+-.+.||..|+.+|+-.= .-
T Consensus 86 ~~~V~-~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eID-e~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q-e~ 162 (885)
T COG5218 86 EELVA-GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREID-EVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ-EM 162 (885)
T ss_pred hHHHH-HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHH-HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH-hc
Confidence 44442 566777888899999999999999999986544333 4455578888887666666789999999999763 22
Q ss_pred hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015951 243 LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 276 (397)
Q Consensus 243 ~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~ 276 (397)
..+.+-++ ...|+.+++.+. +..+|+-|+
T Consensus 163 ~~neen~~----~n~l~~~vqnDP-S~EVRr~al 191 (885)
T COG5218 163 ELNEENRI----VNLLKDIVQNDP-SDEVRRLAL 191 (885)
T ss_pred cCChHHHH----HHHHHHHHhcCc-HHHHHHHHH
Confidence 22223332 237777777552 345676553
No 210
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=79.33 E-value=6.8 Score=44.06 Aligned_cols=199 Identities=17% Similarity=0.151 Sum_probs=121.5
Q ss_pred CCCchhHHHhcCCHHHHHHhcCC--------CCHHHHHHHHHHHHHHhcCChHHHHHHHHc--------CcHHHHHHhhc
Q 015951 158 PIDNANDLSKLGGLSVLVGQLNH--------PDTDIRKISAWILGKASQNNPLVQKQVLEL--------GALSKLMKMVK 221 (397)
Q Consensus 158 ~iDnA~~~~~lGGl~~Li~lL~s--------~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~--------g~lp~Ll~LL~ 221 (397)
+-.-|++|.++||+..++++..- +..++-..|..+|.-+. .-|..|.++... .||..+++-..
T Consensus 590 ~w~~aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t-~iP~iq~~La~~~~~n~~aydGiaIiL~~a~ 668 (1516)
T KOG1832|consen 590 QWPAAENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVT-SIPDIQKALAHATLSNNRAYDGIAIILDAAN 668 (1516)
T ss_pred cchHHHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeE-ecchHHHHHHHHHhhcccccCceEEEeeccc
Confidence 34578999999999999987642 34677788888877554 579999888763 36666665543
Q ss_pred CC----CHHHHHHHHHHHHHHhcCChhcHHHHH----hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC
Q 015951 222 SS----FVEEAVKALYTVSSLIRNNLAGQEMFY----VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 293 (397)
Q Consensus 222 s~----~~~v~~kAl~ALS~LiR~~~~~~~~f~----~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~ 293 (397)
-. +++++..|+..|-+++..-|.+....+ ...|-+.. .+... .|...+-..|. .
T Consensus 669 g~~~i~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~--~l~~~-------~ks~~le~~l~---------~ 730 (1516)
T KOG1832|consen 669 GSNSIVDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRI--FLGAG-------TKSAKLEQVLR---------Q 730 (1516)
T ss_pred ccccccCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccc--cccCC-------CchHHHHHHHH---------H
Confidence 22 468899999999998876655444332 22221111 11111 11111111121 2
Q ss_pred cchhHHhCCcHHHHHHhccCC----C-hHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHhhh------
Q 015951 294 EPPLFRDRFFLKSVVDLTASA----D-LDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVML------ 362 (397)
Q Consensus 294 ~~~~l~~~g~v~~Lv~lL~~~----d-~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l~~------ 362 (397)
....++....|+.|+.+|+.. + ..++.-|.++|.-|+.+++ -|+.+.+-. ++.. .+.+.+|.
T Consensus 731 mw~~Vr~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~t-VrQIltKLp----Lvt~--~~~q~lm~ePV~~D 803 (1516)
T KOG1832|consen 731 MWEAVRGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDDT-VRQILTKLP----LVTN--ERAQILMAEPVTYD 803 (1516)
T ss_pred HHHHHhcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCcH-HHHHHHhCc----cccc--hHHHHHhhCccccc
Confidence 344567788899999998753 2 3577888899999998865 677665222 2221 23333442
Q ss_pred -hhhhhhhHHhHHHHHHHHHH
Q 015951 363 -EEDQRDYAMDVEALRREVEL 382 (397)
Q Consensus 363 -~e~~~~~~~~l~~~~~e~~~ 382 (397)
-.++.-||-.-.+|-+|+++
T Consensus 804 kr~~H~~fck~A~~Ll~~~~g 824 (1516)
T KOG1832|consen 804 KRHEHLQFCKLASALLKEAQG 824 (1516)
T ss_pred chhHHHHHHHHHHHHHHHHhC
Confidence 24577888765555555543
No 211
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=79.31 E-value=20 Score=37.91 Aligned_cols=125 Identities=14% Similarity=0.208 Sum_probs=88.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCC---hhcHHHHHhcCcHHHHHHhhcCCC-----ccHHHHHHHHHHHHHHhh
Q 015951 213 LSKLMKMVKSSFVEEAVKALYTVSSLIRNN---LAGQEMFYVEAGDLMLQDILGNSS-----FEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 213 lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~---~~~~~~f~~~gGi~~L~~lL~s~~-----~d~klr~kA~~lL~~L~~ 284 (397)
...+..++...+++.|-.|+.-+--.+++. ..+...++++=|+..+-++|.+++ .|.-.+.-++.++..+|+
T Consensus 13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~ 92 (698)
T KOG2611|consen 13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR 92 (698)
T ss_pred hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence 344677888888888999999999888874 345666889999999999997532 334467778899999996
Q ss_pred chhccCCCCcc--hhHHhCCcHHHHHHhccCC-ChH------HHHHHHHHHHHHhcCChHHHHHHHhcCCh
Q 015951 285 CQLENMHKVEP--PLFRDRFFLKSVVDLTASA-DLD------LQEKALAAIKNLLQLRTTEALVLKDFCGL 346 (397)
Q Consensus 285 ~~l~~~~~~~~--~~l~~~g~v~~Lv~lL~~~-d~d------v~E~aL~aL~~L~~~~~~~r~~~~~~~gL 346 (397)
. |+.. +.++ .-|+.+.+.+... |+| +.+-+-.+|...+......+..+. .||+
T Consensus 93 ~------pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia-~G~~ 154 (698)
T KOG2611|consen 93 V------PELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIA-SGGL 154 (698)
T ss_pred C------hhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHh-cCch
Confidence 3 2221 1122 3466677766553 555 899999999999998765555554 4443
No 212
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=78.83 E-value=9.8 Score=44.10 Aligned_cols=106 Identities=17% Similarity=0.132 Sum_probs=73.7
Q ss_pred HhcCC-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH---HhcCChhcHHHHHh
Q 015951 176 GQLNH-PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS---LIRNNLAGQEMFYV 251 (397)
Q Consensus 176 ~lL~s-~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~---LiR~~~~~~~~f~~ 251 (397)
.++++ .....|..|...|..++++-. -+..++ -++|.++.++.++...||..|+-+|.. ++|..|+.-..++-
T Consensus 429 s~IR~lk~~~tK~~ALeLl~~lS~~i~--de~~LD-RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~ 505 (1431)
T KOG1240|consen 429 SCIRALKTIQTKLAALELLQELSTYID--DEVKLD-RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFP 505 (1431)
T ss_pred HHHHhhhcchhHHHHHHHHHHHhhhcc--hHHHHh-hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhH
Confidence 44433 457788899999999998632 222233 489999999999989999988888775 56766654444444
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 252 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 252 ~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
.=-++.|.+++.+. +...+|.--+..|..|+..
T Consensus 506 eYlfP~L~~l~~d~-~~~~vRiayAsnla~LA~t 538 (1431)
T KOG1240|consen 506 EYLFPHLNHLLNDS-SAQIVRIAYASNLAQLAKT 538 (1431)
T ss_pred hhhhhhhHhhhccC-ccceehhhHHhhHHHHHHH
Confidence 44678888888874 2445777777777777653
No 213
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=78.82 E-value=36 Score=38.59 Aligned_cols=206 Identities=14% Similarity=0.104 Sum_probs=128.2
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCC-------chh--HHHhc----CCHHHH
Q 015951 108 RQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID-------NAN--DLSKL----GGLSVL 174 (397)
Q Consensus 108 r~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD-------nA~--~~~~l----GGl~~L 174 (397)
-..|+.+++=.=+-|...++-++.++.|++++.-. - |-+.++-++.+.. .|. -+.+- .-+|.+
T Consensus 797 ~l~Wv~KaLl~R~~~~s~~ia~klld~Ls~~~~g~-~---aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l 872 (1030)
T KOG1967|consen 797 VLAWVTKALLLRNHPESSEIAEKLLDLLSGPSTGS-P---AAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPIL 872 (1030)
T ss_pred HHHHHHHHHHHcCCcccchHHHHHHHhcCCccccc-h---HHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHH
Confidence 46677776532245666778888888888865321 1 1222222222211 111 13332 346666
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC
Q 015951 175 VGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA 253 (397)
Q Consensus 175 i~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~-g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g 253 (397)
++......-.+|..-...|+++-.|-|. |...=+. ..+|.|++-|+=.+..+|..++..|.-++..++.-+..-+ .-
T Consensus 873 ~~~~~t~~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~T 950 (1030)
T KOG1967|consen 873 VSKFETAPGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-ST 950 (1030)
T ss_pred HHHhccCCccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hH
Confidence 7766666778999999999999999886 3322222 4689999999988889999999999988877766554432 12
Q ss_pred cHHHHHHhhcCCCc-cHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHH
Q 015951 254 GDLMLQDILGNSSF-EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALA 324 (397)
Q Consensus 254 Gi~~L~~lL~s~~~-d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~ 324 (397)
-++.+..+-.+++. ..-+|.-|..++..|..-. ..+... -....++..+...|..+.--+|+.|..
T Consensus 951 lvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~---P~~~l~--~fr~~Vl~al~k~LdDkKRlVR~eAv~ 1017 (1030)
T KOG1967|consen 951 LVPYLLSLSSDNDNNMMVVREDALQCLNALTRRL---PTKSLL--SFRPLVLRALIKILDDKKRLVRKEAVD 1017 (1030)
T ss_pred HHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccC---CCcccc--cccHHHHHHhhhccCcHHHHHHHHHHH
Confidence 34555555444422 2668889999999987521 111111 123456777777887776677777764
No 214
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=78.52 E-value=74 Score=31.61 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=92.5
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC---CchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhc-
Q 015951 125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI---DNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQ- 198 (397)
Q Consensus 125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i---DnA~~~~~lGGl~~Li~lL~s--~~~~ir~~Aa~vLg~~aq- 198 (397)
.+++-.+...++.+. + ++..-|+..+.-++=++ +.+..+.+ ...|+|.+.+.. ..+.+|..++.+||-++-
T Consensus 85 ~tL~~~~~k~lkkg~-~-~E~~lA~~~l~Ll~ltlg~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv 161 (309)
T PF05004_consen 85 ETLLDALLKSLKKGK-S-EEQALAARALALLALTLGAGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFV 161 (309)
T ss_pred HHHHHHHHHHhccCC-H-HHHHHHHHHHHHHhhhcCCCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHh
Confidence 445666667676654 3 66667777777665553 45666665 366677777754 356788888878887653
Q ss_pred --CChHHHHHHHHcCcHHHHH--HhhcCC----------CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC
Q 015951 199 --NNPLVQKQVLELGALSKLM--KMVKSS----------FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 264 (397)
Q Consensus 199 --NNp~~Q~~vl~~g~lp~Ll--~LL~s~----------~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s 264 (397)
+.+..-...++ .+..+. ...+++ ++.+...|+.+-+-++..-|...-.-.-...++.|..+|.+
T Consensus 162 ~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s 239 (309)
T PF05004_consen 162 GGSDEEETEELME--SLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDS 239 (309)
T ss_pred hcCChhHHHHHHH--HHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcC
Confidence 34433332111 222111 112221 24578888888888887665522221124568999999998
Q ss_pred CCccHHHHHHHHHHHHHHh
Q 015951 265 SSFEIRLHRKAVSLVGDLA 283 (397)
Q Consensus 265 ~~~d~klr~kA~~lL~~L~ 283 (397)
+ +..+|.-|--.|.-|.
T Consensus 240 ~--d~~VRiAAGEaiAll~ 256 (309)
T PF05004_consen 240 D--DVDVRIAAGEAIALLY 256 (309)
T ss_pred C--CHHHHHHHHHHHHHHH
Confidence 7 6678888877777554
No 215
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=78.51 E-value=11 Score=41.69 Aligned_cols=125 Identities=14% Similarity=0.111 Sum_probs=80.0
Q ss_pred HHHHHHh-cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHH
Q 015951 171 LSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEM 248 (397)
Q Consensus 171 l~~Li~l-L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~-~~~v~~kAl~ALS~LiR~~~~~~~~ 248 (397)
+..|+.+ .+..+.+||..|.-.||-++-..| ..+|..+++|+.+ ++-||..|..||+=.+.+.. ...
T Consensus 556 ir~lLh~aVsD~nDDVrRaAVialGFVl~~dp---------~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG-~~e- 624 (929)
T KOG2062|consen 556 IRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP---------EQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG-LKE- 624 (929)
T ss_pred HHHhhcccccccchHHHHHHHHHheeeEecCh---------hhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC-cHH-
Confidence 3334433 345789999999999999998877 4678888988754 57899999999996665532 222
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHH
Q 015951 249 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQ 319 (397)
Q Consensus 249 f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~ 319 (397)
.+.+|-.+..++ .+ -+|.-|+-.+.-+..++ .+...+.+ .|+.+.+..++...+.+..
T Consensus 625 -----Ai~lLepl~~D~-~~-fVRQgAlIa~amIm~Q~----t~~~~pkv--~~frk~l~kvI~dKhEd~~ 682 (929)
T KOG2062|consen 625 -----AINLLEPLTSDP-VD-FVRQGALIALAMIMIQQ----TEQLCPKV--NGFRKQLEKVINDKHEDGM 682 (929)
T ss_pred -----HHHHHhhhhcCh-HH-HHHHHHHHHHHHHHHhc----ccccCchH--HHHHHHHHHHhhhhhhHHH
Confidence 345555666654 23 37777777776655543 33333333 3555666666655544433
No 216
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=77.89 E-value=11 Score=32.54 Aligned_cols=91 Identities=19% Similarity=0.234 Sum_probs=66.7
Q ss_pred HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015951 230 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 309 (397)
Q Consensus 230 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 309 (397)
...-.|+-+++..+.+... ++..|..=|+++ ++.++..|+.++-.++. +.++.+...+.+..++..|+.
T Consensus 19 ~~~l~icD~i~~~~~~~k~-----a~r~l~krl~~~--n~~v~l~AL~lLe~~vk----Ncg~~f~~ev~s~~fl~~L~~ 87 (133)
T smart00288 19 ELILEICDLINSTPDGPKD-----AVRLLKKRLNNK--NPHVALLALTLLDACVK----NCGSKFHLEVASKEFLNELVK 87 (133)
T ss_pred HHHHHHHHHHhCCCccHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HCCHHHHHHHHhHHHHHHHHH
Confidence 4555667777766543332 455677777776 56789999999999987 356667777888899999999
Q ss_pred hccCC-ChH-HHHHHHHHHHHHhc
Q 015951 310 LTASA-DLD-LQEKALAAIKNLLQ 331 (397)
Q Consensus 310 lL~~~-d~d-v~E~aL~aL~~L~~ 331 (397)
+++.. +.. |+++++..+.+...
T Consensus 88 l~~~~~~~~~Vk~kil~li~~W~~ 111 (133)
T smart00288 88 LIKPKYPLPLVKKRILELIQEWAD 111 (133)
T ss_pred HHcCCCCcHHHHHHHHHHHHHHHH
Confidence 88775 333 99999988877663
No 217
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=77.23 E-value=18 Score=40.04 Aligned_cols=133 Identities=10% Similarity=0.094 Sum_probs=87.5
Q ss_pred HHHHHHHhccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCcHHHHHHhhcCCC
Q 015951 147 RALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE-LGALSKLMKMVKSSF 224 (397)
Q Consensus 147 ~AL~~L~~Lve~iDn-A~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~-~g~lp~Ll~LL~s~~ 224 (397)
.+|..+.+|...-++ ...+.+--+++-+=.++..+++.+|..|+.++.++.-.+--.-..+.+ ...+|....++....
T Consensus 561 E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~ 640 (748)
T KOG4151|consen 561 EALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVAD 640 (748)
T ss_pred HHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhh
Confidence 344455554443322 234777666666556778889999999999999999865555555556 356777766666644
Q ss_pred HHHHHHHHHH---HHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015951 225 VEEAVKALYT---VSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 283 (397)
Q Consensus 225 ~~v~~kAl~A---LS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~ 283 (397)
+.....+..| |-+.+.++-+. ..--..|...++.++.+. +..+|.+....+.++.
T Consensus 641 E~~~lA~a~a~a~I~sv~~n~c~~--~~~~~~~~e~~~~~i~~~--~~~~qhrgl~~~ln~~ 698 (748)
T KOG4151|consen 641 EKFELAGAGALAAITSVVENHCSR--ILELLEWLEILVRAIQDE--DDEIQHRGLVIILNLF 698 (748)
T ss_pred hHHhhhccccccchhhcchhhhhh--HHHhhcchHHHHHhhcCc--hhhhhhhhhhhhhhHH
Confidence 4333333333 55565555443 223368999999999987 5668999999888855
No 218
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=77.06 E-value=11 Score=37.73 Aligned_cols=63 Identities=13% Similarity=0.174 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHcC--cHHHHHHhhcCCC---HHHHHHHHHHHHHHhcCChhcHH
Q 015951 184 DIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMVKSSF---VEEAVKALYTVSSLIRNNLAGQE 247 (397)
Q Consensus 184 ~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g--~lp~Ll~LL~s~~---~~v~~kAl~ALS~LiR~~~~~~~ 247 (397)
.+|..|..++..+. .++..+..++..+ .+..|+.+++.+. ..++..|+++|.+++++.+...+
T Consensus 237 ~iRllAi~~l~~~~-~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~ 304 (329)
T PF06012_consen 237 QIRLLAIANLVYIH-PESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSD 304 (329)
T ss_pred HHHHHHHHHHHhhC-CCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHH
Confidence 46778888777776 5788999999888 8999999998764 46899999999999987654443
No 219
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=76.66 E-value=7.5 Score=34.33 Aligned_cols=91 Identities=15% Similarity=0.174 Sum_probs=67.1
Q ss_pred HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015951 230 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 309 (397)
Q Consensus 230 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 309 (397)
...-.|+-+++..+.+.. ..+..|..=|.++ ++.++..|+.++-.++. +.+..+...+.+..++..|+.
T Consensus 19 ~~il~icD~I~~~~~~~k-----~a~ral~KRl~~~--n~~v~l~AL~LLe~~vk----NCG~~fh~evask~Fl~eL~k 87 (144)
T cd03568 19 GLILDVCDKVKSDENGAK-----DCLKAIMKRLNHK--DPNVQLRALTLLDACAE----NCGKRFHQEVASRDFTQELKK 87 (144)
T ss_pred HHHHHHHHHHhcCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----HCCHHHHHHHhhHHHHHHHHH
Confidence 334445555655432222 3455666667765 56789999999999986 456677778888899999999
Q ss_pred hccC-CChHHHHHHHHHHHHHhc
Q 015951 310 LTAS-ADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 310 lL~~-~d~dv~E~aL~aL~~L~~ 331 (397)
++.. .++.|+++++..+...+.
T Consensus 88 l~~~~~~~~Vk~kil~li~~W~~ 110 (144)
T cd03568 88 LINDRVHPTVKEKLREVVKQWAD 110 (144)
T ss_pred HhcccCCHHHHHHHHHHHHHHHH
Confidence 9988 799999999998888774
No 220
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=76.35 E-value=41 Score=38.77 Aligned_cols=153 Identities=14% Similarity=0.089 Sum_probs=93.2
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHH
Q 015951 169 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQE 247 (397)
Q Consensus 169 GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~ 247 (397)
+.+.-|+.-|++.+..||+.||.-+|.+++.-| ..+-..+|...+.++.--. +..=-.|+-||+-+.+-.-.-..
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp----~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps 416 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP----PELADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS 416 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc----HHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence 456667777888999999999999999999888 2233346777777665433 33444788888887664322222
Q ss_pred HHHhcCcHHHHHHhhcCC------CccHHHHHHHHHHHHHHhhchhccCCCC-cchhHHhCCcHHHHHHhccCCChHHHH
Q 015951 248 MFYVEAGDLMLQDILGNS------SFEIRLHRKAVSLVGDLAKCQLENMHKV-EPPLFRDRFFLKSVVDLTASADLDLQE 320 (397)
Q Consensus 248 ~f~~~gGi~~L~~lL~s~------~~d~klr~kA~~lL~~L~~~~l~~~~~~-~~~~l~~~g~v~~Lv~lL~~~d~dv~E 320 (397)
.+. ..++++...|.-+ +...-+|--|+++++.++.. ..+. ..+ +.+.=.-..|...+=..+..+|.
T Consensus 417 ~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Ra----ys~~~l~p-~l~~L~s~LL~~AlFDrevncRR 489 (1133)
T KOG1943|consen 417 LLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARA----YSPSDLKP-VLQSLASALLIVALFDREVNCRR 489 (1133)
T ss_pred HHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhc----CChhhhhH-HHHHHHHHHHHHHhcCchhhHhH
Confidence 221 3445555544311 11234788999999999873 2332 232 22111111122223345778999
Q ss_pred HHHHHHHHHhcC
Q 015951 321 KALAAIKNLLQL 332 (397)
Q Consensus 321 ~aL~aL~~L~~~ 332 (397)
.|..|+.....-
T Consensus 490 AAsAAlqE~VGR 501 (1133)
T KOG1943|consen 490 AASAALQENVGR 501 (1133)
T ss_pred HHHHHHHHHhcc
Confidence 999988877643
No 221
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=76.08 E-value=18 Score=39.10 Aligned_cols=100 Identities=13% Similarity=0.177 Sum_probs=60.1
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc-----------CcHHHHHHhhcCC---------------------CHH
Q 015951 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLEL-----------GALSKLMKMVKSS---------------------FVE 226 (397)
Q Consensus 179 ~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~-----------g~lp~Ll~LL~s~---------------------~~~ 226 (397)
+.+.-+.+..+..+|..+..|.|..++.+++. ...-.++.+|-.+ +.-
T Consensus 423 ~eGg~eFK~~~Vdaisd~~~~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~i 502 (898)
T COG5240 423 QEGGLEFKKYMVDAISDAMENDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNI 502 (898)
T ss_pred hcccchHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhH
Confidence 33445566666666666666666666655542 1222333444321 223
Q ss_pred HHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015951 227 EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 283 (397)
Q Consensus 227 v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~ 283 (397)
+|..|+.|||-..-+- -+.|........|.+|+.+. |..+|-+|.|++.+|-
T Consensus 503 vRsaAv~aLskf~ln~---~d~~~~~sv~~~lkRclnD~--DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 503 VRSAAVQALSKFALNI---SDVVSPQSVENALKRCLNDQ--DDEVRDRASFLLRNMR 554 (898)
T ss_pred HHHHHHHHHHHhccCc---cccccHHHHHHHHHHHhhcc--cHHHHHHHHHHHHhhh
Confidence 4677888887643321 12333345567889999986 5569999999999985
No 222
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=76.06 E-value=1.2e+02 Score=32.54 Aligned_cols=178 Identities=13% Similarity=0.068 Sum_probs=108.6
Q ss_pred HHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC-CCHH------HHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH
Q 015951 145 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH-PDTD------IRKISAWILGKASQNNPLVQKQVLELGALSKLM 217 (397)
Q Consensus 145 k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s-~~~~------ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll 217 (397)
+..++..|.-+|...+-|--=.-..-+|.|+..++. .+++ +-..+-.||..++.. |.-+...+..|+++.+-
T Consensus 80 ~~i~itvLacFC~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~ 158 (698)
T KOG2611|consen 80 LQISITVLACFCRVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIA 158 (698)
T ss_pred HHHHHHHHHHHhCChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHH
Confidence 345677777777776665433334678999988843 4444 788899999999876 77899999999999999
Q ss_pred HhhcCCC----HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC
Q 015951 218 KMVKSSF----VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV 293 (397)
Q Consensus 218 ~LL~s~~----~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~ 293 (397)
++-.-.+ ..+..+.+.-..+=+-..+.....|... +..+..=+... +...+-..+.++.++...- ..+-
T Consensus 159 Q~y~~~~~~~d~alal~Vlll~~~~~~cw~e~~~~flal--i~~va~df~~~--~~a~KfElc~lL~~vl~~~---~~e~ 231 (698)
T KOG2611|consen 159 QMYELPDGSHDMALALKVLLLLVSKLDCWSETIERFLAL--IAAVARDFAVL--HNALKFELCHLLSAVLSSE---YSEL 231 (698)
T ss_pred HHHhCCCCchhHHHHHHHHHHHHHhcccCcCCHHHHHHH--HHHHHHHHHHh--hhHHHHHHHHHHHHHHhCC---hHHh
Confidence 8765322 3455555544444445567777777654 44444444433 2246778999999876531 0111
Q ss_pred cchhHHhCCcHHHH----HHhccCC-ChHHHHHHHHHHHHHh
Q 015951 294 EPPLFRDRFFLKSV----VDLTASA-DLDLQEKALAAIKNLL 330 (397)
Q Consensus 294 ~~~~l~~~g~v~~L----v~lL~~~-d~dv~E~aL~aL~~L~ 330 (397)
..+-+..+.|-+.+ +..|.+. .+.-+..|+....+++
T Consensus 232 ~~~pl~~~~w~~~l~~G~~~IL~~kv~p~qr~pAL~Laa~~~ 273 (698)
T KOG2611|consen 232 LHEPLRSMNWADYLRTGVVAILQNKVAPSQRLPALILAANMM 273 (698)
T ss_pred ccChhhhcchHHHHHHHHHHHHhcccCchhcChHHHHHHHHH
Confidence 22223333444433 3445443 3334445555444544
No 223
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.86 E-value=19 Score=36.02 Aligned_cols=144 Identities=15% Similarity=0.128 Sum_probs=93.5
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC--CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc
Q 015951 121 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQ 198 (397)
Q Consensus 121 ~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i--DnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aq 198 (397)
+.+.-..+++++..|.+.+ =+.++..|..+..|.+-. -....|++ .+..+++-+++....|-..|+.+++.+.+
T Consensus 83 fd~p~~al~~~l~~L~s~d--W~~~vdgLn~irrLs~fh~e~l~~~L~~--vii~vvkslKNlRS~VsraA~~t~~difs 158 (334)
T KOG2933|consen 83 FDDPEAALKQALKKLSSDD--WEDKVDGLNSIRRLSEFHPESLNPMLHE--VIIAVVKSLKNLRSAVSRAACMTLADIFS 158 (334)
T ss_pred cCcHHHHHHHHHHHhchHH--HHHHhhhHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHhcChHHHHHHHHHHHHHHHHH
Confidence 3344456788888887653 467888888888766422 22333433 46667788899999999999999999998
Q ss_pred C-ChHHHHHHHHcCcHHHHH-HhhcC---CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHH
Q 015951 199 N-NPLVQKQVLELGALSKLM-KMVKS---SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHR 273 (397)
Q Consensus 199 N-Np~~Q~~vl~~g~lp~Ll-~LL~s---~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~ 273 (397)
+ |..+++ .+..++ .|+.. ++.-++..|.-||-+++.+-.++. .++.|..+++.. ..+++.
T Consensus 159 ~ln~~i~~------~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~-------~L~~L~~~~~~~--n~r~r~ 223 (334)
T KOG2933|consen 159 SLNNSIDQ------ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQK-------LLRKLIPILQHS--NPRVRA 223 (334)
T ss_pred HHHHHHHH------HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHH-------HHHHHHHHHhhh--chhhhh
Confidence 6 333443 233333 33332 334678889999999987754422 234556666654 456788
Q ss_pred HHHHHHHHHh
Q 015951 274 KAVSLVGDLA 283 (397)
Q Consensus 274 kA~~lL~~L~ 283 (397)
+++.+..+..
T Consensus 224 ~a~~~~~~~v 233 (334)
T KOG2933|consen 224 KAALCFSRCV 233 (334)
T ss_pred hhhccccccc
Confidence 8876666554
No 224
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=74.35 E-value=30 Score=32.10 Aligned_cols=127 Identities=10% Similarity=0.069 Sum_probs=76.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCChHHHHHH---------------HHcCcHHHHHHhhcCCC------HHHHHHHHHHHH
Q 015951 178 LNHPDTDIRKISAWILGKASQNNPLVQKQV---------------LELGALSKLMKMVKSSF------VEEAVKALYTVS 236 (397)
Q Consensus 178 L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~v---------------l~~g~lp~Ll~LL~s~~------~~v~~kAl~ALS 236 (397)
+..+....-..++.+|+|+++....+...+ .+...+..|+.++..+. ..---...+-++
T Consensus 4 i~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~ 83 (192)
T PF04063_consen 4 ITDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLA 83 (192)
T ss_pred ecCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHH
Confidence 334455566678888888887654443221 22346888998887621 122345678888
Q ss_pred HHhcCChhcHHHHHhcC--c--HHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh---CCcHHHHHH
Q 015951 237 SLIRNNLAGQEMFYVEA--G--DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD---RFFLKSVVD 309 (397)
Q Consensus 237 ~LiR~~~~~~~~f~~~g--G--i~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~---~g~v~~Lv~ 309 (397)
|+.+ .+.+++.|++.. . +..|...+.+. +.-=|.-++.+|.|.|.+ ...-+++.. .++++.+.-
T Consensus 84 NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~--s~iRR~Gva~~IrNccFd------~~~H~~LL~~~~~~iLp~LLl 154 (192)
T PF04063_consen 84 NLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHK--SVIRRGGVAGTIRNCCFD------TDSHEWLLSDDEVDILPYLLL 154 (192)
T ss_pred HhcC-CHHHHHHHhCchhhhhHHHHHHHHhccC--cHHHHHHHHHHHHHhhcc------HhHHHHhcCchhhhhHHHHHh
Confidence 8876 578888888642 3 45555556655 333466788899999974 223344443 345555555
Q ss_pred hccC
Q 015951 310 LTAS 313 (397)
Q Consensus 310 lL~~ 313 (397)
.|..
T Consensus 155 PLaG 158 (192)
T PF04063_consen 155 PLAG 158 (192)
T ss_pred hccC
Confidence 5543
No 225
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.32 E-value=82 Score=35.03 Aligned_cols=158 Identities=16% Similarity=0.101 Sum_probs=96.4
Q ss_pred HHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHH
Q 015951 149 LQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA 228 (397)
Q Consensus 149 L~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~ 228 (397)
|--+-.+=++||. |.-.-+++|+++--.=+.-.--.+.-+...|.+.-+.+ +..+-.=|.+.++...
T Consensus 62 LlyI~llg~dIdF--------GhmEaV~LLss~kysEKqIGYl~is~L~n~n~dl~klv-----in~iknDL~srn~~fv 128 (938)
T KOG1077|consen 62 LLYIYLLGYDIDF--------GHMEAVNLLSSNKYSEKQIGYLFISLLLNENSDLMKLV-----INSIKNDLSSRNPTFV 128 (938)
T ss_pred HHHHHHhcCcccc--------chHHHHHHhhcCCccHHHHhHHHHHHHHhcchHHHHHH-----HHHHHhhhhcCCcHHH
Confidence 3333344466663 44455678876543333333444444444343222222 2233333444455556
Q ss_pred HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHH
Q 015951 229 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 308 (397)
Q Consensus 229 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 308 (397)
--|+..|+++ +.......|. .-++ .+|-+++...-+|.||+-++-.|.. ..|+. +.-.+|...++
T Consensus 129 ~LAL~~I~ni--G~re~~ea~~--~DI~---KlLvS~~~~~~vkqkaALclL~L~r-----~spDl---~~~~~W~~riv 193 (938)
T KOG1077|consen 129 CLALHCIANI--GSREMAEAFA--DDIP---KLLVSGSSMDYVKQKAALCLLRLFR-----KSPDL---VNPGEWAQRIV 193 (938)
T ss_pred HHHHHHHHhh--ccHhHHHHhh--hhhH---HHHhCCcchHHHHHHHHHHHHHHHh-----cCccc---cChhhHHHHHH
Confidence 6789999987 3445555553 2333 5666655556699999999999886 23443 33468999999
Q ss_pred HhccCCChHHHHHHHHHHHHHhcCCh
Q 015951 309 DLTASADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 309 ~lL~~~d~dv~E~aL~aL~~L~~~~~ 334 (397)
.+|...+..+.-.+...+..|+...+
T Consensus 194 ~LL~D~~~gv~ta~~sLi~~lvk~~p 219 (938)
T KOG1077|consen 194 HLLDDQHMGVVTAATSLIEALVKKNP 219 (938)
T ss_pred HHhCccccceeeehHHHHHHHHHcCC
Confidence 99999888888888888888887654
No 226
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=72.98 E-value=17 Score=34.75 Aligned_cols=197 Identities=15% Similarity=0.127 Sum_probs=104.4
Q ss_pred CChHHHHHHHHHhccccccccCCCCHHHHHHhHHHHHHHHHhcCCCCH----HHH-HHHHHHHhhCCCCCHHHHHHHHHH
Q 015951 77 SSIDGMLQWAIAKLKETAQDVQRLSPSELKKRQMEIKELMEKLKTPSD----AQL-IQIAIDDLNNSTLSLEDSQRALQE 151 (397)
Q Consensus 77 ~~l~glLkwsi~~~~~~~~~~~~~s~e~l~~r~~~L~ea~~~~~~~~d----~~l-mk~~i~~L~~~~~s~e~k~~AL~~ 151 (397)
.|.+++++==.+-.. .-.+..+++++++ ..|++.++.+..++. ... ...+...+. ..+.+.+.-++|-
T Consensus 14 ~n~~~i~~KL~efn~-~~~~~~~l~~~el----~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~Wp~~~~fP~lDL 86 (268)
T PF08324_consen 14 ANLDKILKKLKEFNE-KLQKELKLSEEEL----ESLESLLSALKSTSAYHSDLSAWLILLLKILL--SWPPESRFPALDL 86 (268)
T ss_dssp --HHHHHHHHHHHHT-TSHCCT-S-HHHH----HHHHHHHCCCCCC-SS---HHHHHHHHHHHHC--CS-CCC-HHHHHH
T ss_pred CCHHHHHHHHHHHHH-hCccccCCCHHHH----HHHHHHHHHhcCCCccccchhHHHHHHHHHHH--hCCCccchhHHhH
Confidence 356666552222111 1133457888765 447777765533211 232 333334443 2345678899999
Q ss_pred HHhccCCCCchhHHHhcCC--HHHHHHhc----CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC--cHHHHHHhhcCC
Q 015951 152 LLILVEPIDNANDLSKLGG--LSVLVGQL----NHPDTDIRKISAWILGKASQNNPLVQKQVLELG--ALSKLMKMVKSS 223 (397)
Q Consensus 152 L~~Lve~iDnA~~~~~lGG--l~~Li~lL----~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g--~lp~Ll~LL~s~ 223 (397)
++-++-+...+..+...++ ...+..++ .+..+..+..++++++|+..+.+ .+..++.+. .+...+..+.++
T Consensus 87 lRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~-~~~~~~~~~~~~i~~~~~~~~~~ 165 (268)
T PF08324_consen 87 LRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPP-GRQLLLSHFDSSILELLSSLLSS 165 (268)
T ss_dssp HHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCC-CHHHHHCTHHTCHHHHCHCCCTT
T ss_pred HHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCc-cHHHHHhcccchHHHHHHHHhhc
Confidence 9998888887777766642 33333433 23678999999999999998654 566666543 344444444443
Q ss_pred ----CHHHHHHHHH---HHHHHhcCChh-cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 224 ----FVEEAVKALY---TVSSLIRNNLA-GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 224 ----~~~v~~kAl~---ALS~LiR~~~~-~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
+..++..+.. -+|......+. .... ..-+..+...+.....+.....+++-++++|+.
T Consensus 166 ~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~---~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~ 231 (268)
T PF08324_consen 166 LLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ---SELLSSIIEVLSREESDEEALYRLLVALGTLLS 231 (268)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH---HHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHC
T ss_pred cccccHHHHHHHHHHHHHHHHHHHhcCCChHHH---HHHHHHHHHHhccccCCHHHHHHHHHHHHHHhc
Confidence 3455544333 33333333321 0000 012344444333232356688899999999985
No 227
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=72.66 E-value=1.4e+02 Score=33.06 Aligned_cols=134 Identities=15% Similarity=0.101 Sum_probs=91.1
Q ss_pred hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhc
Q 015951 167 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAG 245 (397)
Q Consensus 167 ~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~ 245 (397)
+-.-+|.|...++..+..+|..+..++.+++.-=+ -.++..-.+|.|-.+... .+..++..++-|+..++ ..
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~----q~ 459 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI----QR 459 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH----HH
Confidence 34567778888899999999999999999986422 455666678988887544 34578999999999988 33
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCC
Q 015951 246 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD 315 (397)
Q Consensus 246 ~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d 315 (397)
++.+--..-+.++..+.+.. ++.+....+.+...+..- .+. ...+.-+.+++.++-+...+.
T Consensus 460 lD~~~v~d~~lpi~~~~~~~--dp~iv~~~~~i~~~l~~~-----~~~-g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 460 LDKAAVLDELLPILKCIKTR--DPAIVMGFLRIYEALALI-----IYS-GVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HHHHHhHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHhh-----ccc-ceeeehhhhhhhhhhhhhccc
Confidence 33333334445555555554 566777888888777752 111 133455677888777766553
No 228
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=72.64 E-value=41 Score=37.27 Aligned_cols=142 Identities=13% Similarity=0.102 Sum_probs=97.9
Q ss_pred cCCHHHHHH-hcCC----CCHHHHHHHHHHHHHHh-cCChHHHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhc
Q 015951 168 LGGLSVLVG-QLNH----PDTDIRKISAWILGKAS-QNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIR 240 (397)
Q Consensus 168 lGGl~~Li~-lL~s----~~~~ir~~Aa~vLg~~a-qNNp~~Q~~vl~~g~lp~Ll~LL~-s~~~~v~~kAl~ALS~LiR 240 (397)
+|-+.|++. ...+ ++++++..|--+|..+. -.+..|- .-+|.|+..+. ++.+-+|..|+-+++-++-
T Consensus 890 Ls~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~------ehlpllIt~mek~p~P~IR~NaVvglgD~~v 963 (1128)
T COG5098 890 LSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS------EHLPLLITSMEKHPIPRIRANAVVGLGDFLV 963 (1128)
T ss_pred HhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHhhCCCcceeccceeeccccce
Confidence 456777774 4433 78999999988887754 2333332 35899999998 5667889999999987654
Q ss_pred CChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHH
Q 015951 241 NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQE 320 (397)
Q Consensus 241 ~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E 320 (397)
.+. .|++.+--- |-+-|.+. +..+|+.+...+..|..- +. +.=.|....++.+|..+|..+.+
T Consensus 964 cfN----~~~de~t~y-LyrrL~De--~~~V~rtclmti~fLila----gq------~KVKGqlg~ma~~L~deda~Isd 1026 (1128)
T COG5098 964 CFN----TTADEHTHY-LYRRLGDE--DADVRRTCLMTIHFLILA----GQ------LKVKGQLGKMALLLTDEDAEISD 1026 (1128)
T ss_pred ehh----hhhHHHHHH-HHHHhcch--hhHHHHHHHHHHHHHHHc----cc------eeeccchhhhHhhccCCcchHHH
Confidence 433 344433333 34444443 445899898899988751 11 22257788889999999999999
Q ss_pred HHHHHHHHHhcC
Q 015951 321 KALAAIKNLLQL 332 (397)
Q Consensus 321 ~aL~aL~~L~~~ 332 (397)
.|-..+..++.-
T Consensus 1027 mar~fft~~a~K 1038 (1128)
T COG5098 1027 MARHFFTQIAKK 1038 (1128)
T ss_pred HHHHHHHHHHhc
Confidence 998888888864
No 229
>KOG1566 consensus Conserved protein Mo25 [Function unknown]
Probab=72.31 E-value=1.1e+02 Score=30.72 Aligned_cols=104 Identities=16% Similarity=0.180 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcCChhcHHHHHhcCc----HHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC-CcchhHHhC
Q 015951 227 EAVKALYTVSSLIRNNLAGQEMFYVEAG----DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK-VEPPLFRDR 301 (397)
Q Consensus 227 v~~kAl~ALS~LiR~~~~~~~~f~~~gG----i~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~-~~~~~l~~~ 301 (397)
+..-|......+++.|.....+|+..+= .+.-..++.+. +.=+++.+..++.++... .++. .....+.+.
T Consensus 182 iasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~~~~Ll~s~--Nyvtkrqs~kllg~llld---r~N~~~M~kYiss~ 256 (342)
T KOG1566|consen 182 IASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEVYEKLLRSE--NYVTKRQSLKLLGELLLD---RSNSAVMTKYISSP 256 (342)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHHHHHHhccc--ceehHHHHHHhHHHHHhC---CCcHHHHHHHhcCH
Confidence 4456666677777777888888887664 34466677776 444899999999998852 1221 233455666
Q ss_pred CcHHHHHHhccCCChHHHHHHHHHHHHHhcCChH
Q 015951 302 FFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 335 (397)
Q Consensus 302 g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~ 335 (397)
.-++.+..+|+.+...+|-.|-......+..+.+
T Consensus 257 enLKlmM~llrdkskniQ~eAFhvFKvfvAnpnK 290 (342)
T KOG1566|consen 257 ENLKLMMNLLRDKSKNIQLEAFHVFKVFVANPNK 290 (342)
T ss_pred HHHHHHHHHhhCccccchHHHHHHHHHHhcCCCC
Confidence 7788999999999999999999999988887653
No 230
>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5
Probab=71.77 E-value=13 Score=29.16 Aligned_cols=68 Identities=10% Similarity=0.097 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCc
Q 015951 228 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF 303 (397)
Q Consensus 228 ~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~ 303 (397)
.+.|+||++++.. .+.+...+.+.+-++.++++..+. +...+|--+.+.|.=++. ..+-.+.+.+.||
T Consensus 4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s-~v~siRGT~fy~Lglis~------T~~G~~~L~~~gW 71 (73)
T PF14668_consen 4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENS-PVLSIRGTCFYVLGLISS------TEEGAEILDELGW 71 (73)
T ss_pred HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhC-CccchHHHHHHHHHHHhC------CHHHHHHHHHcCC
Confidence 4679999999964 567777777789999999998854 234466666666665553 3344556666665
No 231
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=71.46 E-value=1.8e+02 Score=32.62 Aligned_cols=161 Identities=14% Similarity=0.103 Sum_probs=106.5
Q ss_pred HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHH--------------------------------------HHhcCChHHHH
Q 015951 164 DLSKLGGLSVLVGQLNHPDTDIRKISAWILG--------------------------------------KASQNNPLVQK 205 (397)
Q Consensus 164 ~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg--------------------------------------~~aqNNp~~Q~ 205 (397)
..++.||+..|+.+.....++-+..+..+|. +++.-|...++
T Consensus 499 ~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~ 578 (748)
T KOG4151|consen 499 KKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGERSYEVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQ 578 (748)
T ss_pred ccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCCchhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHH
Confidence 4556788888887765545555555555554 33333555666
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh--cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015951 206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 283 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~--~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~ 283 (397)
.+++.-+++.+-.++..+++..++.++..+.||.-+ |.....|+- ..|.+....++... +.++...++..+.-+.
T Consensus 579 ~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~-~~~~e~si~e~~~~l~~w~~~~e~~--~E~~~lA~a~a~a~I~ 655 (748)
T KOG4151|consen 579 KILKEKALGKIEELMTEENPALQRAALESIINLLWS-PLLYERSIVEYKDRLKLWNLNLEVA--DEKFELAGAGALAAIT 655 (748)
T ss_pred HHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhh-HHHHHHHhhccccCchHHHHHHHhh--hhHHhhhccccccchh
Confidence 677777777766677777777889999999998764 555666653 35777766666652 5567666666665444
Q ss_pred hchhccCCCCcch-hHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 284 KCQLENMHKVEPP-LFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 284 ~~~l~~~~~~~~~-~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
+ .....++ ...-..+...++.++.+++..+|-..+..+.++...
T Consensus 656 s-----v~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~ 700 (748)
T KOG4151|consen 656 S-----VVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA 700 (748)
T ss_pred h-----cchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH
Confidence 3 1233333 344456777788888899999999998888886654
No 232
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=71.34 E-value=12 Score=31.59 Aligned_cols=40 Identities=25% Similarity=0.395 Sum_probs=35.0
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Q 015951 170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL 210 (397)
Q Consensus 170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~ 210 (397)
|++.|+..|..++++|...|..+|-.+|..+ .+.+.++..
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v~~ 48 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLVSL 48 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHHHc
Confidence 7889999999999999999999999999876 677776664
No 233
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.60 E-value=2e+02 Score=32.85 Aligned_cols=169 Identities=18% Similarity=0.124 Sum_probs=95.6
Q ss_pred HHHHHHhc---CCCCHHHHHHHHHHHhhCCCC-CHHHHHHHHHHHHhccCCCCchhHHHh------------cCCHHHHH
Q 015951 112 IKELMEKL---KTPSDAQLIQIAIDDLNNSTL-SLEDSQRALQELLILVEPIDNANDLSK------------LGGLSVLV 175 (397)
Q Consensus 112 L~ea~~~~---~~~~d~~lmk~~i~~L~~~~~-s~e~k~~AL~~L~~Lve~iDnA~~~~~------------lGGl~~Li 175 (397)
+.+|+..+ .+|.-.--+.++...+++... +...-+..++...+.+.+.|.=--+-. -.-+|.+.
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcevy~e~il~dL~ 808 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEVYPEDILPDLS 808 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHhcchhhHHHHH
Confidence 44455444 244444455556666664332 333444556666666666663222222 24556666
Q ss_pred H-hcCC---CCHHHHHHHHHHHHHHhcC-ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015951 176 G-QLNH---PDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 250 (397)
Q Consensus 176 ~-lL~s---~~~~ir~~Aa~vLg~~aqN-Np~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~ 250 (397)
+ +.+. +.++.|...-.+|+..+|- ++-++...- -.+...++.+++++...|..++.+++.+++-.......|+
T Consensus 809 e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~ 886 (982)
T KOG4653|consen 809 EEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF 886 (982)
T ss_pred HHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence 5 4433 2245555555788887763 444444332 3456666777765556799999999988764432222222
Q ss_pred hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 251 VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 251 ~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
+..+..++.+.+.+ ..+-+|+-|+.++..+..
T Consensus 887 -~ev~~~Il~l~~~d-~s~~vRRaAv~li~~lL~ 918 (982)
T KOG4653|consen 887 -HEVLQLILSLETTD-GSVLVRRAAVHLLAELLN 918 (982)
T ss_pred -HHHHHHHHHHHccC-CchhhHHHHHHHHHHHHh
Confidence 23444555555543 366799999999999875
No 234
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=70.46 E-value=66 Score=31.25 Aligned_cols=142 Identities=18% Similarity=0.135 Sum_probs=78.2
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcC--CCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015951 174 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS--SFVEEAVKALYTVSSLIRNNLAGQEMFYV 251 (397)
Q Consensus 174 Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s--~~~~v~~kAl~ALS~LiR~~~~~~~~f~~ 251 (397)
|=++|+++++.+|..|..+|+.+..+-|.-. +...-+..|+..+.+ ++.....-++.++..+++...-..
T Consensus 4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~----- 75 (262)
T PF14500_consen 4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSP----- 75 (262)
T ss_pred hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCCh-----
Confidence 3468999999999999999999998766321 222234444444432 122233333666666664322111
Q ss_pred cCcHHHHHHhhcCC---CccHHHHHHHHHHHHHHhhchhccCCCCcchhHH--hCCcHHHHHHhccCC-ChHHHHHHHHH
Q 015951 252 EAGDLMLQDILGNS---SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR--DRFFLKSVVDLTASA-DLDLQEKALAA 325 (397)
Q Consensus 252 ~gGi~~L~~lL~s~---~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~--~~g~v~~Lv~lL~~~-d~dv~E~aL~a 325 (397)
..+..++..+.++- +-....|..+-.++..|..+ ..+.+. ...++..+++..... ||...-.+-..
T Consensus 76 ~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~--------~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l 147 (262)
T PF14500_consen 76 ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLEN--------HREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKL 147 (262)
T ss_pred hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHH--------hHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 11334444444321 12344677777788887753 112222 235666677766554 77666666555
Q ss_pred HHHHhc
Q 015951 326 IKNLLQ 331 (397)
Q Consensus 326 L~~L~~ 331 (397)
+..+.+
T Consensus 148 ~~~i~~ 153 (262)
T PF14500_consen 148 LKVILQ 153 (262)
T ss_pred HHHHHH
Confidence 555543
No 235
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=70.26 E-value=1.7e+02 Score=31.98 Aligned_cols=192 Identities=18% Similarity=0.156 Sum_probs=112.1
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc----C-------CHH-HHHHhcCCCCHHHHHHHHHH
Q 015951 125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL----G-------GLS-VLVGQLNHPDTDIRKISAWI 192 (397)
Q Consensus 125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l----G-------Gl~-~Li~lL~s~~~~ir~~Aa~v 192 (397)
.+.|.-+.++|-+..+.++-|..|--.|-+-++.-|.+....=. | -+. ..+.-|.++.|.+-..|+..
T Consensus 38 ~qf~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql 117 (858)
T COG5215 38 EQFISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWLGMRHESKEQVKGMALRALKSPEPRFCTMAAQL 117 (858)
T ss_pred HHHHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 34555666777666656667777666666655555544322111 1 011 12356778888888888888
Q ss_pred HHHHhcCChHHHHHHHHcCcHHHHH----HhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHH-hcC--cHHHHHHhhcC
Q 015951 193 LGKASQNNPLVQKQVLELGALSKLM----KMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFY-VEA--GDLMLQDILGN 264 (397)
Q Consensus 193 Lg~~aqNNp~~Q~~vl~~g~lp~Ll----~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~-~~g--Gi~~L~~lL~s 264 (397)
|+.++.-. +-+|..|-|. .....+. ..++..++.++|.++..-.| +.++ ..| -+.+....++.
T Consensus 118 ~aaIA~~E-------lp~~~wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~ces~~P--e~li~~sN~il~aiv~ga~k~ 188 (858)
T COG5215 118 LAAIARME-------LPNSLWPGLMEEMVRNVGDEQPVSGKCESLGICGYHCESEAP--EDLIQMSNVILFAIVMGALKN 188 (858)
T ss_pred HHHHHHhh-------CccccchHHHHHHHHhccccCchHhHHHHHHHHHHHhhccCH--HHHHHHhhHHHHHHHHhhccc
Confidence 88887421 1234444444 4444333 45788999999999876544 3333 233 23344444554
Q ss_pred CCccHHHHHHHHHHHHH-Hhhchhcc-CCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 265 SSFEIRLHRKAVSLVGD-LAKCQLEN-MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 265 ~~~d~klr~kA~~lL~~-L~~~~l~~-~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
. ++..+|..|..+|.+ |..-+. + ..+.. ..-+++.+++.-..+|..++-+|..||..+...
T Consensus 189 e-t~~avRLaaL~aL~dsl~fv~~-nf~~E~e-----rNy~mqvvceatq~~d~e~q~aafgCl~kim~L 251 (858)
T COG5215 189 E-TTSAVRLAALKALMDSLMFVQG-NFCYEEE-----RNYFMQVVCEATQGNDEELQHAAFGCLNKIMML 251 (858)
T ss_pred C-chHHHHHHHHHHHHHHHHHHHH-hhcchhh-----hchhheeeehhccCCcHHHHHHHHHHHHHHHHH
Confidence 4 567889999999988 432110 0 00111 122334455666778889999999888887765
No 236
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=69.96 E-value=30 Score=28.76 Aligned_cols=91 Identities=13% Similarity=0.135 Sum_probs=62.3
Q ss_pred HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHH
Q 015951 229 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 308 (397)
Q Consensus 229 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 308 (397)
.+.+-.|+-+++.++.... ..+..|..-|.++ +.+.+.+|+.+|-+++.+ .++.+...+.+..++..++
T Consensus 18 ~~~i~~i~d~~~~~~~~~~-----~~~~~l~kRl~~~--~~~~~lkaL~lLe~lvkN----~g~~f~~~i~~~~~~~~l~ 86 (115)
T cd00197 18 WPLIMEICDLINETNVGPK-----EAVDAIKKRINNK--NPHVVLKALTLLEYCVKN----CGERFHQEVASNDFAVELL 86 (115)
T ss_pred HHHHHHHHHHHHCCCccHH-----HHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHH----ccHHHHHHHHHhHHHHHHH
Confidence 3556666767665533222 2455666667765 678999999999999974 5677777787777777776
Q ss_pred Hh-----cc-CCChHHHHHHHHHHHHHh
Q 015951 309 DL-----TA-SADLDLQEKALAAIKNLL 330 (397)
Q Consensus 309 ~l-----L~-~~d~dv~E~aL~aL~~L~ 330 (397)
.. .. ..+..++++++..+...+
T Consensus 87 ~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 87 KFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HhhccccccCCCChHHHHHHHHHHHHHh
Confidence 53 11 237789999998776654
No 237
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=69.32 E-value=16 Score=30.94 Aligned_cols=80 Identities=20% Similarity=0.214 Sum_probs=54.8
Q ss_pred HhHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCC--HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHH
Q 015951 107 KRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS--LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTD 184 (397)
Q Consensus 107 ~r~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s--~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ 184 (397)
+|+..++++|... -..++.-+.+.+...... .+....+|+.+..++.-++ ...+...+-++.+.++|. +++
T Consensus 67 ~r~~~l~~~l~~~----~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~-~~~i~~~~~l~~~~~~l~--~~~ 139 (148)
T PF08389_consen 67 ERRRELKDALRSN----SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIP-IELIINSNLLNLIFQLLQ--SPE 139 (148)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS--HHHHHSSSHHHHHHHHTT--SCC
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCC-HHHhccHHHHHHHHHHcC--CHH
Confidence 5888899888763 234444455555444322 5677889999999999666 445555667888889884 455
Q ss_pred HHHHHHHHH
Q 015951 185 IRKISAWIL 193 (397)
Q Consensus 185 ir~~Aa~vL 193 (397)
++..|+.||
T Consensus 140 ~~~~A~~cl 148 (148)
T PF08389_consen 140 LREAAAECL 148 (148)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 589998886
No 238
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=69.02 E-value=1.3e+02 Score=30.08 Aligned_cols=144 Identities=15% Similarity=0.080 Sum_probs=94.5
Q ss_pred CCHHHHHHHHHHHHhccCCCCchh-HHHhc-------C----CHHHHHHhcC------CCCHHHHHHHHHHHHHHhcCCh
Q 015951 140 LSLEDSQRALQELLILVEPIDNAN-DLSKL-------G----GLSVLVGQLN------HPDTDIRKISAWILGKASQNNP 201 (397)
Q Consensus 140 ~s~e~k~~AL~~L~~Lve~iDnA~-~~~~l-------G----Gl~~Li~lL~------s~~~~ir~~Aa~vLg~~aqNNp 201 (397)
...+.|..|+..|.-++.+-+.++ .|.+- + ....|+..|- +.+|---|-|+.++..+..+|+
T Consensus 50 ~~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~ 129 (312)
T PF04869_consen 50 QPFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNP 129 (312)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-H
T ss_pred cchHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCH
Confidence 356778888888887776543333 34331 1 1112554433 3456567899999999999999
Q ss_pred HHHHHHHHc------------CcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcCChhcHHHHHhcC-cHHHHHHhhc
Q 015951 202 LVQKQVLEL------------GALSKLMKMVKSS-----FVEEAVKALYTVSSLIRNNLAGQEMFYVEA-GDLMLQDILG 263 (397)
Q Consensus 202 ~~Q~~vl~~------------g~lp~Ll~LL~s~-----~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g-Gi~~L~~lL~ 263 (397)
.+++.++.- ..|+.+..+|... ++-++..-+.-|+.-+-++|.+...|+..+ .++.|+....
T Consensus 130 ~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~ 209 (312)
T PF04869_consen 130 EAKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSN 209 (312)
T ss_dssp HHHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS
T ss_pred HHHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhh
Confidence 999998864 2466677766652 234566667788888999999999999875 7999999754
Q ss_pred -CCCccHHHHHHHHHHHHHHh
Q 015951 264 -NSSFEIRLHRKAVSLVGDLA 283 (397)
Q Consensus 264 -s~~~d~klr~kA~~lL~~L~ 283 (397)
+++.+.-+|-=++++|+-..
T Consensus 210 ~~~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 210 QSSSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp --TCCCHHHHHHHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHHH
Confidence 34456767777888877544
No 239
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=68.59 E-value=64 Score=26.98 Aligned_cols=67 Identities=24% Similarity=0.299 Sum_probs=45.8
Q ss_pred CHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHH-hhcCCCHHH-HHHHHHHHHHHhcCC
Q 015951 170 GLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEE-AVKALYTVSSLIRNN 242 (397)
Q Consensus 170 Gl~~Li~lL~-s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~-LL~s~~~~v-~~kAl~ALS~LiR~~ 242 (397)
.+|.+...|. +..++.|..+..+++.++...|-.. ..+..+++ ++.+..... ...++-+|..+..+.
T Consensus 7 lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~------~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q 76 (121)
T PF12397_consen 7 LLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSD------EVLNALMESILKNWTQETVQRQALICLIVLCQSQ 76 (121)
T ss_pred HHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcH------HHHHHHHHHHHhccccchhHHHHHHHHHHHHHcc
Confidence 3677778887 7889999999999999998877332 23344443 223322222 478888899888665
No 240
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=67.73 E-value=51 Score=27.30 Aligned_cols=84 Identities=20% Similarity=0.194 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHh-ccCCCCchhHHH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh
Q 015951 143 EDSQRALQELLI-LVEPIDNANDLS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 220 (397)
Q Consensus 143 e~k~~AL~~L~~-Lve~iDnA~~~~-~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL 220 (397)
|-|+.||+++.. +.+..=.-.++. .-+.+..|+...+.+.+.....+...+..+++ +|.....+.+.|+...|-++=
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~-~~~a~~~l~~iG~~~fL~klr 80 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFPPVPMKEEVLALLLRLLK-SPYAAQILRDIGAVRFLSKLR 80 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHh-CcHHHHHHHHccHHHHHHHHH
Confidence 567889988885 445555555666 45677888888899988899999999999886 587888899999998877766
Q ss_pred cCCCHHH
Q 015951 221 KSSFVEE 227 (397)
Q Consensus 221 ~s~~~~v 227 (397)
...++..
T Consensus 81 ~~~~~~~ 87 (98)
T PF14726_consen 81 PNVEPNL 87 (98)
T ss_pred hcCCHHH
Confidence 5544443
No 241
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=67.09 E-value=2.2e+02 Score=32.05 Aligned_cols=88 Identities=8% Similarity=0.082 Sum_probs=61.7
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 250 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~ 250 (397)
++.+++.++++.-=+|.+||..+++.. ....+..+-..+......++.+..-.|+..|.-|+.+++++. . .....
T Consensus 462 v~hv~P~f~s~ygfL~Srace~is~~e---eDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~-q-~h~k~ 536 (970)
T COG5656 462 VNHVIPAFRSNYGFLKSRACEFISTIE---EDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNE-Q-SHEKF 536 (970)
T ss_pred HHHhhHhhcCcccchHHHHHHHHHHHH---HhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhch-h-hhHHH
Confidence 444555667777779999999999984 334444444556777778888866689999999999999986 2 33334
Q ss_pred hcCcHHHHHHhhc
Q 015951 251 VEAGDLMLQDILG 263 (397)
Q Consensus 251 ~~gGi~~L~~lL~ 263 (397)
.+...+.+..+|.
T Consensus 537 sahVp~tmekLLs 549 (970)
T COG5656 537 SAHVPETMEKLLS 549 (970)
T ss_pred HhhhhHHHHHHHH
Confidence 4555555555554
No 242
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=67.01 E-value=1.2e+02 Score=28.90 Aligned_cols=177 Identities=17% Similarity=0.136 Sum_probs=102.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC-c-HHHHHHhhcC----CCHHHHHHHHHHHHHHhcCChh
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG-A-LSKLMKMVKS----SFVEEAVKALYTVSSLIRNNLA 244 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g-~-lp~Ll~LL~s----~~~~v~~kAl~ALS~LiR~~~~ 244 (397)
...++..+.+=.++-+..+..++.-++-+.+ .-..+...+ + ...+..++.. .+...+.-++..++|+..+ +.
T Consensus 65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~-~~ 142 (268)
T PF08324_consen 65 LILLLKILLSWPPESRFPALDLLRLAALHPP-ASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH-PP 142 (268)
T ss_dssp HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHC-HHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS-CC
T ss_pred HHHHHHHHHhCCCccchhHHhHHHHHHhCcc-HHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC-Cc
Confidence 3445555666556668899999988887544 433443332 2 3444444433 2356788899999999875 55
Q ss_pred cHHHHHhcCc--HHHHHHhhcCCC--ccHHHHHHHHHHHHHHhhchhccC-CCCcchhHHhCCcHHHHHHhccC--CChH
Q 015951 245 GQEMFYVEAG--DLMLQDILGNSS--FEIRLHRKAVSLVGDLAKCQLENM-HKVEPPLFRDRFFLKSVVDLTAS--ADLD 317 (397)
Q Consensus 245 ~~~~f~~~gG--i~~L~~lL~s~~--~d~klr~kA~~lL~~L~~~~l~~~-~~~~~~~l~~~g~v~~Lv~lL~~--~d~d 317 (397)
....+..+.+ +--.+..+.+.. .+..+|.-+++++.|++....... +.+.. ..++..+++.+.. .|++
T Consensus 143 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~-----~~ll~~i~~~~~~~~~d~E 217 (268)
T PF08324_consen 143 GRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ-----SELLSSIIEVLSREESDEE 217 (268)
T ss_dssp CHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH-----HHHHHHHHHHCHCCHTSHH
T ss_pred cHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH-----HHHHHHHHHHhccccCCHH
Confidence 5666665443 222222222221 145688899999999976431111 11111 1234555663333 5899
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951 318 LQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 318 v~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 355 (397)
..-.++.||++|...++..+.... .-|+...+...+.
T Consensus 218 a~~R~LvAlGtL~~~~~~~~~~~~-~l~~~~~~~~~~~ 254 (268)
T PF08324_consen 218 ALYRLLVALGTLLSSSDSAKQLAK-SLDVKSVLSKKAN 254 (268)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHCC-CCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccChhHHHHHH-HcChHHHHHHHHh
Confidence 999999999999987664443332 3456666554443
No 243
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=66.92 E-value=15 Score=31.99 Aligned_cols=92 Identities=18% Similarity=0.209 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHH
Q 015951 229 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVV 308 (397)
Q Consensus 229 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv 308 (397)
..+...|+-+++..+.+.. ..+..|..-|+++ ++.++..|+.++-.++.+ .++.+...+.+..++..|.
T Consensus 23 w~~~l~icD~i~~~~~~~k-----ea~~~l~krl~~~--~~~vq~~aL~lld~lvkN----cg~~f~~ev~~~~fl~~l~ 91 (140)
T PF00790_consen 23 WSLILEICDLINSSPDGAK-----EAARALRKRLKHG--NPNVQLLALTLLDALVKN----CGPRFHREVASKEFLDELV 91 (140)
T ss_dssp HHHHHHHHHHHHTSTTHHH-----HHHHHHHHHHTTS--SHHHHHHHHHHHHHHHHH----SHHHHHHHHTSHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccHH-----HHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHc----CCHHHHHHHhHHHHHHHHH
Confidence 3455567888877644433 2456677778876 667899999999999873 5566777777888999999
Q ss_pred HhccCC-ChH---HHHHHHHHHHHHhc
Q 015951 309 DLTASA-DLD---LQEKALAAIKNLLQ 331 (397)
Q Consensus 309 ~lL~~~-d~d---v~E~aL~aL~~L~~ 331 (397)
.++... ... |+++++..|.....
T Consensus 92 ~l~~~~~~~~~~~Vk~k~l~ll~~W~~ 118 (140)
T PF00790_consen 92 KLIKSKKTDPETPVKEKILELLQEWAE 118 (140)
T ss_dssp HHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred HHHccCCCCchhHHHHHHHHHHHHHHH
Confidence 987654 333 89999987777663
No 244
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=66.75 E-value=67 Score=34.95 Aligned_cols=149 Identities=14% Similarity=0.123 Sum_probs=94.8
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHh-hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc
Q 015951 176 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM-VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 254 (397)
Q Consensus 176 ~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~L-L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gG 254 (397)
++|.+.++-+|-..+..++.+--.. -..|++..|+.. +++.++.||+.|+.||+-++-..+. -
T Consensus 523 ell~d~ds~lRy~G~fs~alAy~GT-------gn~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~ 586 (926)
T COG5116 523 ELLYDKDSILRYNGVFSLALAYVGT-------GNLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------L 586 (926)
T ss_pred HHhcCchHHhhhccHHHHHHHHhcC-------CcchhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------h
Confidence 5677888889988888777654221 123788889988 6666789999999999987655443 3
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951 255 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 255 i~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 334 (397)
+...+++|... .+.-+|--++++|.-.|... ... -.+..|-.+...+..-||..|.-++..+...
T Consensus 587 lv~tvelLs~s-hN~hVR~g~AvaLGiacag~------G~~------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q-- 651 (926)
T COG5116 587 LVGTVELLSES-HNFHVRAGVAVALGIACAGT------GDK------VATDILEALMYDTNDFVRQSAMIAVGMILMQ-- 651 (926)
T ss_pred hhHHHHHhhhc-cchhhhhhhHHHhhhhhcCC------ccH------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhh--
Confidence 33445666543 24557888888888777531 111 1233333444555556777777777765532
Q ss_pred HHHHHHHhcCChHHHHHHHHHHhHHhhh
Q 015951 335 TEALVLKDFCGLDTALERLRQQLQEVML 362 (397)
Q Consensus 335 ~~r~~~~~~~gL~~~L~~Lr~~~~~l~~ 362 (397)
....|-+-+.+++.++.....
T Consensus 652 -------~n~~Lnp~v~~I~k~f~~vI~ 672 (926)
T COG5116 652 -------CNPELNPNVKRIIKKFNRVIV 672 (926)
T ss_pred -------cCcccChhHHHHHHHHHHHHh
Confidence 133455566667777766654
No 245
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=66.67 E-value=41 Score=37.00 Aligned_cols=146 Identities=15% Similarity=0.149 Sum_probs=92.5
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCC--HHHHHHHHHHHHHHhcCC
Q 015951 123 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPD--TDIRKISAWILGKASQNN 200 (397)
Q Consensus 123 ~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~--~~ir~~Aa~vLg~~aqNN 200 (397)
++.-..-..++.+.-. +.++|..=+.-|.+.++.. -.++++...++.|+..+...+ .++......+ |.....-
T Consensus 251 n~fvd~~~fLeel~lk--s~~eK~~Ff~~L~~~l~~~--pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~-~k~ld~~ 325 (690)
T KOG1243|consen 251 NDFVDTLLFLEELRLK--SVEEKQKFFSGLIDRLDNF--PEEIIASKVLPILLAALEFGDAASDFLTPLFKL-GKDLDEE 325 (690)
T ss_pred chHHHHHHHHHhcccC--cHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhccccchhhhhHHHHh-hhhcccc
Confidence 3333333344444333 5677776666665533333 367888888888887665544 3333333333 3222222
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015951 201 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 280 (397)
Q Consensus 201 p~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~ 280 (397)
+ ++.+.+|.|++|+.+.+..+|..-|.-+=..+.+-+ ...++---++.+...+.+. +.-+|..++..+.
T Consensus 326 e------yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt---~~~~~d~I~phv~~G~~DT--n~~Lre~Tlksm~ 394 (690)
T KOG1243|consen 326 E------YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLT---KQILNDQIFPHVALGFLDT--NATLREQTLKSMA 394 (690)
T ss_pred c------cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcC---HHhhcchhHHHHHhhcccC--CHHHHHHHHHHHH
Confidence 2 455789999999999888889887777777766544 3455667788888888876 4568888888888
Q ss_pred HHhh
Q 015951 281 DLAK 284 (397)
Q Consensus 281 ~L~~ 284 (397)
.|+.
T Consensus 395 ~La~ 398 (690)
T KOG1243|consen 395 VLAP 398 (690)
T ss_pred HHHh
Confidence 8774
No 246
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=66.67 E-value=1.8e+02 Score=35.09 Aligned_cols=210 Identities=12% Similarity=0.081 Sum_probs=123.5
Q ss_pred hHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHh--cCCHHHHHHhcCCCCHHH
Q 015951 108 RQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK--LGGLSVLVGQLNHPDTDI 185 (397)
Q Consensus 108 r~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~--lGGl~~Li~lL~s~~~~i 185 (397)
.+++|-..-++++.| +++-+-|+.. |+..+-..|..|.--|--+..+-- ..+.. -..+|.|.++=-.|++.|
T Consensus 941 TYKELc~LASdl~qP---dLVYKFM~LA-nh~A~wnSk~GaAfGf~~i~~~a~--~kl~p~l~kLIPrLyRY~yDP~~~V 1014 (1702)
T KOG0915|consen 941 TYKELCNLASDLGQP---DLVYKFMQLA-NHNATWNSKKGAAFGFGAIAKQAG--EKLEPYLKKLIPRLYRYQYDPDKKV 1014 (1702)
T ss_pred HHHHHHHHHhhcCCh---HHHHHHHHHh-hhhchhhcccchhhchHHHHHHHH--HhhhhHHHHhhHHHhhhccCCcHHH
Confidence 356666666666654 5666766654 445555566665433333332210 01111 135777777777899999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc--CcHHHHHHhhc
Q 015951 186 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE--AGDLMLQDILG 263 (397)
Q Consensus 186 r~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~--gGi~~L~~lL~ 263 (397)
|..=..+=+++.+....+-+..+.. .+.-|+.-+.+..=-||..++.||+-++|+.|. ..|.+. .-|..+.+.+.
T Consensus 1015 q~aM~sIW~~Li~D~k~~vd~y~ne-Il~eLL~~lt~kewRVReasclAL~dLl~g~~~--~~~~e~lpelw~~~fRvmD 1091 (1702)
T KOG0915|consen 1015 QDAMTSIWNALITDSKKVVDEYLNE-ILDELLVNLTSKEWRVREASCLALADLLQGRPF--DQVKEKLPELWEAAFRVMD 1091 (1702)
T ss_pred HHHHHHHHHHhccChHHHHHHHHHH-HHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh--HHHHHHHHHHHHHHHHHHH
Confidence 9999999999998755555555543 566666666554445789999999999999764 445442 45666667666
Q ss_pred CCCccH-HHHHHHHHHHHHHhhchhccCCC--------CcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951 264 NSSFEI-RLHRKAVSLVGDLAKCQLENMHK--------VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 264 s~~~d~-klr~kA~~lL~~L~~~~l~~~~~--------~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 334 (397)
+=+..+ ..-.+++..|+.||.-.-+-.++ ...+++.+.|+ + +.-..++.-++.+|.-|+..+.
T Consensus 1092 DIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gi-------m-s~v~evr~~si~tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1092 DIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGI-------M-SKVNEVRRFSIGTLMDLAKSSG 1163 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCc-------c-cchHHHHHHHHHHHHHHHHhch
Confidence 432111 12335566666665421000111 12233344443 2 4456788888888888887644
No 247
>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D. melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.
Probab=66.56 E-value=1.5e+02 Score=30.00 Aligned_cols=89 Identities=24% Similarity=0.220 Sum_probs=61.5
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhc-CCCCH-HHHHHHHHHHHHHhcCChHHHHHHH
Q 015951 131 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDT-DIRKISAWILGKASQNNPLVQKQVL 208 (397)
Q Consensus 131 ~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL-~s~~~-~ir~~Aa~vLg~~aqNNp~~Q~~vl 208 (397)
+++.+. ++.+..-|..++-.|..-+-+.+..+.|...|....++..+ ..++. ..--.++-++..+.+..+ +-..+.
T Consensus 26 lld~l~-~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~-~~~l~~ 103 (361)
T PF07814_consen 26 LLDGLE-SSSSSSVRRSSLLELASKCADPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL-NMHLLL 103 (361)
T ss_pred HHhhcc-cCCCccHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc-chhhhh
Confidence 444455 44455678888888888888899999999999999999988 44544 444444555556665543 344444
Q ss_pred HcCcHHHHHHhhc
Q 015951 209 ELGALSKLMKMVK 221 (397)
Q Consensus 209 ~~g~lp~Ll~LL~ 221 (397)
..+.+..+++++.
T Consensus 104 ~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 104 DRDSLRLLLKLLK 116 (361)
T ss_pred chhHHHHHHHHhc
Confidence 5666777788887
No 248
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=65.68 E-value=23 Score=37.60 Aligned_cols=81 Identities=16% Similarity=0.146 Sum_probs=60.5
Q ss_pred HHhcCCHHHHH-H---hcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 015951 165 LSKLGGLSVLV-G---QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 240 (397)
Q Consensus 165 ~~~lGGl~~Li-~---lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR 240 (397)
++-.||||.+- . -..+.+.++|..|-.+||.+++..|..= .-+.+.+..|.+-|..++++++...-.|||+++.
T Consensus 366 ~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~--~~d~~li~~LF~sL~~~~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 366 VILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLF--SKDLSLIEFLFDSLEDESPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccc--cccHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence 34457888771 0 1234678999999999999999988641 1235678888888877788999999999999988
Q ss_pred CChhcHH
Q 015951 241 NNLAGQE 247 (397)
Q Consensus 241 ~~~~~~~ 247 (397)
++.....
T Consensus 444 af~~~~~ 450 (501)
T PF13001_consen 444 AFKDLPD 450 (501)
T ss_pred HHhcccc
Confidence 7665443
No 249
>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]
Probab=65.42 E-value=52 Score=34.32 Aligned_cols=82 Identities=18% Similarity=0.149 Sum_probs=61.3
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCH-------H-HHHHHHHHHHHHhcCChhcH-HHHHh
Q 015951 181 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-------E-EAVKALYTVSSLIRNNLAGQ-EMFYV 251 (397)
Q Consensus 181 ~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~-------~-v~~kAl~ALS~LiR~~~~~~-~~f~~ 251 (397)
++-.+-..|..||.+++-+.+.+|+.+++.....++++.+-..-. + .-.+-++-++.+= +..+ +.+++
T Consensus 109 ~d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale---~~~Rsql~~~ 185 (532)
T KOG4464|consen 109 ADMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALE---TDHRSQLIAE 185 (532)
T ss_pred cchHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhh---HHHHHHHHHH
Confidence 345788899999999999999999999999888888887754321 1 1246667676652 2333 45567
Q ss_pred cCcHHHHHHhhcCC
Q 015951 252 EAGDLMLQDILGNS 265 (397)
Q Consensus 252 ~gGi~~L~~lL~s~ 265 (397)
.+|++.+...+.++
T Consensus 186 l~Gl~~lt~~led~ 199 (532)
T KOG4464|consen 186 LLGLELLTNWLEDK 199 (532)
T ss_pred hcccHHHHHHhhcc
Confidence 99999999998753
No 250
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=65.24 E-value=1.5e+02 Score=33.72 Aligned_cols=226 Identities=13% Similarity=0.063 Sum_probs=128.7
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhc----CCCC----HHHHHHHHHH
Q 015951 121 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL----NHPD----TDIRKISAWI 192 (397)
Q Consensus 121 ~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL----~s~~----~~ir~~Aa~v 192 (397)
.+...+.|-..++.+.+....-+.-...+.-|.++|.--.|.+.+.++|+++.|+..| ..+. +++-..-..+
T Consensus 115 ~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~I 194 (802)
T PF13764_consen 115 ECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEI 194 (802)
T ss_pred cCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHH
Confidence 3455777888888887655444444455666777777678999999999999999755 3444 6677777777
Q ss_pred HHHHhcCC----hHHHHHHHHcCc--------HHHHHHhhcCC----CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHH
Q 015951 193 LGKASQNN----PLVQKQVLELGA--------LSKLMKMVKSS----FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 256 (397)
Q Consensus 193 Lg~~aqNN----p~~Q~~vl~~g~--------lp~Ll~LL~s~----~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~ 256 (397)
+-.+...- ......+....+ +..|++.+.+. ++.+....+..|..++.+++...+.++++ +.
T Consensus 195 iE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~--F~ 272 (802)
T PF13764_consen 195 IESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH--FK 272 (802)
T ss_pred HHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH--HH
Confidence 76666421 111111112222 77777777754 35566677888888999988877666532 11
Q ss_pred HHHHh--hc-CCCccHHHHHHHHHHHHHHhhchh-ccCCCCcchhHHhCCcHHHHHHhccCC--------ChHH------
Q 015951 257 MLQDI--LG-NSSFEIRLHRKAVSLVGDLAKCQL-ENMHKVEPPLFRDRFFLKSVVDLTASA--------DLDL------ 318 (397)
Q Consensus 257 ~L~~l--L~-s~~~d~klr~kA~~lL~~L~~~~l-~~~~~~~~~~l~~~g~v~~Lv~lL~~~--------d~dv------ 318 (397)
...++ +. ..+.+.++ .+-.+..++..-- ......+++.+.+.|+++..++.|... .++-
T Consensus 273 p~l~f~~~D~~~~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ 349 (802)
T PF13764_consen 273 PYLDFDKFDEEHSPDEQF---KLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSR 349 (802)
T ss_pred HhcChhhcccccCchHHH---HHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcC
Confidence 11111 11 11112212 1333444443210 011235688889999999888766431 1222
Q ss_pred --HHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHH
Q 015951 319 --QEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 353 (397)
Q Consensus 319 --~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~L 353 (397)
...+|..|.-|+..-+.+...+. ...| +.+.+|
T Consensus 350 psLp~iL~lL~GLa~gh~~tQ~~~~-~~~l-~~lH~L 384 (802)
T PF13764_consen 350 PSLPYILRLLRGLARGHEPTQLLIA-EQLL-PLLHRL 384 (802)
T ss_pred CcHHHHHHHHHHHHhcCHHHHHHHH-hhHH-HHHHHh
Confidence 23467777777776543433333 3333 444444
No 251
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.40 E-value=1.1e+02 Score=34.57 Aligned_cols=138 Identities=20% Similarity=0.175 Sum_probs=79.6
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH----H---
Q 015951 177 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM----F--- 249 (397)
Q Consensus 177 lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~----f--- 249 (397)
||.|.++.+-..+|.+.-.+| |..|.. +.+..|+++|.+ +.+++.-.+.+|+.++...|.-..- |
T Consensus 295 Ll~S~n~sVVmA~aql~y~lA---P~~~~~----~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ 366 (968)
T KOG1060|consen 295 LLQSRNPSVVMAVAQLFYHLA---PKNQVT----KIAKALVRLLRS-NREVQYVVLQNIATISIKRPTLFEPHLKSFFVR 366 (968)
T ss_pred HHhcCCcHHHHHHHhHHHhhC---CHHHHH----HHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhhhhhhhhceEee
Confidence 455677777777777777776 333333 347889999987 4466777777777776554432111 1
Q ss_pred ------------------HhcCcHH-HHHHh---hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHH
Q 015951 250 ------------------YVEAGDL-MLQDI---LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV 307 (397)
Q Consensus 250 ------------------~~~gGi~-~L~~l---L~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~L 307 (397)
...+-+. +|..+ .++. +..+..-|+.+|+..+.. . .-....++..|
T Consensus 367 ssDp~~vk~lKleiLs~La~esni~~ILrE~q~YI~s~--d~~faa~aV~AiGrCA~~-----~-----~sv~~tCL~gL 434 (968)
T KOG1060|consen 367 SSDPTQVKILKLEILSNLANESNISEILRELQTYIKSS--DRSFAAAAVKAIGRCASR-----I-----GSVTDTCLNGL 434 (968)
T ss_pred cCCHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHh-----h-----CchhhHHHHHH
Confidence 1111111 11111 1222 222333444444443321 0 01234567778
Q ss_pred HHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951 308 VDLTASADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 308 v~lL~~~d~dv~E~aL~aL~~L~~~~~ 334 (397)
+.+|++.|..|...+...+..|.+..+
T Consensus 435 v~Llsshde~Vv~eaV~vIk~Llq~~p 461 (968)
T KOG1060|consen 435 VQLLSSHDELVVAEAVVVIKRLLQKDP 461 (968)
T ss_pred HHHHhcccchhHHHHHHHHHHHHhhCh
Confidence 888988888899999999999888765
No 252
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=64.32 E-value=41 Score=37.01 Aligned_cols=72 Identities=17% Similarity=0.155 Sum_probs=57.7
Q ss_pred HhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc
Q 015951 166 SKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR 240 (397)
Q Consensus 166 ~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR 240 (397)
..-+-+|.|+++..+++..||..= |..+-+.-+.....+++.-.+|.+..-+.+.++.+|..++.++..++-
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~L---L~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~ 398 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLL---LQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAP 398 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHH---HHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHh
Confidence 344678899999999999999764 444445555677788888999999999999999999988888887763
No 253
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=63.85 E-value=1.6e+02 Score=29.33 Aligned_cols=159 Identities=13% Similarity=0.091 Sum_probs=106.2
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhc-CChhcHHHHHhc--CcHHHH
Q 015951 182 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIR-NNLAGQEMFYVE--AGDLML 258 (397)
Q Consensus 182 ~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR-~~~~~~~~f~~~--gGi~~L 258 (397)
+...+..+..++.++.++ -++.+.+.|++....+...++.-+.++++ +.......|+.. =..+.+
T Consensus 39 ~~~~~~~g~~l~~~iL~~------------~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l 106 (330)
T PF11707_consen 39 DLSFQSYGLELIRSILQN------------HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSL 106 (330)
T ss_pred chhHHHHHHHHHHHHHHH------------HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhH
Confidence 344677777776666553 17778888888887777889999999999 766666777653 244466
Q ss_pred HHhhcCCC----cc-------HHHHHHHHHHHHHHhhchhccCCCCcch-hHHhCCcHHHHHHhccCCChHHHHHHHHHH
Q 015951 259 QDILGNSS----FE-------IRLHRKAVSLVGDLAKCQLENMHKVEPP-LFRDRFFLKSVVDLTASADLDLQEKALAAI 326 (397)
Q Consensus 259 ~~lL~s~~----~d-------~klr~kA~~lL~~L~~~~l~~~~~~~~~-~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL 326 (397)
..++.-.. .. ..+|...+.++-.++.. .++..+. .+.+.+.+..+...|..+++++....+.+|
T Consensus 107 ~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~----~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l 182 (330)
T PF11707_consen 107 PKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSS----GDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETL 182 (330)
T ss_pred HHHhccccccccccccccccCcCHHHHHHHHHHHHHcc----CCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHH
Confidence 66663211 10 14677777777777653 4555544 455678888999999999999999999999
Q ss_pred HH-HhcCChHHHHHHHhcCCh--HHHHHHHHHHhHH
Q 015951 327 KN-LLQLRTTEALVLKDFCGL--DTALERLRQQLQE 359 (397)
Q Consensus 327 ~~-L~~~~~~~r~~~~~~~gL--~~~L~~Lr~~~~~ 359 (397)
.. +..+. .-++..+ +.+ +..|.+|.+-|..
T Consensus 183 ~~~Vl~~~-~v~r~~K--~~~fn~~~L~~l~~Ly~~ 215 (330)
T PF11707_consen 183 KDKVLKDS-SVSRSTK--CKLFNEWTLSQLASLYSR 215 (330)
T ss_pred HHHhccCC-CCChhhh--hhhcCHHHHHHHHHHhcc
Confidence 96 55554 3344333 222 6677777765543
No 254
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=62.89 E-value=42 Score=36.41 Aligned_cols=93 Identities=15% Similarity=0.197 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhccCCCCchhHHHhc----CC-----------HHHHHHhcCCCCHHHHHHHHHHHHHHhcC--ChHH
Q 015951 141 SLEDSQRALQELLILVEPIDNANDLSKL----GG-----------LSVLVGQLNHPDTDIRKISAWILGKASQN--NPLV 203 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iDnA~~~~~l----GG-----------l~~Li~lL~s~~~~ir~~Aa~vLg~~aqN--Np~~ 203 (397)
.|+.|+.||++|-.++|+-+.-.-.+.+ |- +.-+.+-+--.+.-||..|..+|...+-| .+.+
T Consensus 444 ~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~ 523 (898)
T COG5240 444 DPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDVVS 523 (898)
T ss_pred CchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccccc
Confidence 5789999999999999987765433321 10 01111111114667999999999888765 4444
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHH
Q 015951 204 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSL 238 (397)
Q Consensus 204 Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~L 238 (397)
++. +...|-.++++.++++|-.|.+++-++
T Consensus 524 ~~s-----v~~~lkRclnD~DdeVRdrAsf~l~~~ 553 (898)
T COG5240 524 PQS-----VENALKRCLNDQDDEVRDRASFLLRNM 553 (898)
T ss_pred HHH-----HHHHHHHHhhcccHHHHHHHHHHHHhh
Confidence 443 345677889998999999999999987
No 255
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.83 E-value=37 Score=36.77 Aligned_cols=119 Identities=13% Similarity=0.142 Sum_probs=79.3
Q ss_pred CCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcH
Q 015951 169 GGLSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQ 246 (397)
Q Consensus 169 GGl~~Li~l-L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~-~~~v~~kAl~ALS~LiR~~~~~~ 246 (397)
|.+..|+.+ .+..+.+||..|.-+||-+|-..+ +.++..+++|+.+ +.-||.....||+-.+.+....
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~- 620 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK- 620 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH-
Confidence 344555555 466889999999999999986554 7889999999765 4678988888888666553221
Q ss_pred HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc
Q 015951 247 EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT 311 (397)
Q Consensus 247 ~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL 311 (397)
-.+.+|-.++.++ .+ -+|.-|+-+++-+..+ .++...+.+ .++++.+..++
T Consensus 621 ------~a~diL~~L~~D~-~d-fVRQ~AmIa~~mIl~Q----~n~~Lnp~v--~~I~k~f~~vI 671 (926)
T COG5116 621 ------VATDILEALMYDT-ND-FVRQSAMIAVGMILMQ----CNPELNPNV--KRIIKKFNRVI 671 (926)
T ss_pred ------HHHHHHHHHhhCc-HH-HHHHHHHHHHHHHHhh----cCcccChhH--HHHHHHHHHHH
Confidence 2356677777776 23 4888888888877764 344444433 13444444444
No 256
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.70 E-value=36 Score=37.94 Aligned_cols=133 Identities=11% Similarity=0.103 Sum_probs=79.8
Q ss_pred CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc---------
Q 015951 141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLEL--------- 210 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~--------- 210 (397)
+.|-|+.+.+.+.-|+....- -+.+-+.-|...| +.+.-+-+.....+|..++..||..++..+++
T Consensus 367 sDeFKivvvdai~sLc~~fp~----k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefIEDce 442 (865)
T KOG1078|consen 367 SDEFKIVVVDAIRSLCLKFPR----KHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKERGLEHLCEFIEDCE 442 (865)
T ss_pred cccceEEeHHHHHHHHhhccH----HHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHhcc
Confidence 446666656666555543221 1123344444555 34556777778888888888888777766553
Q ss_pred --CcHHHHHHhhcC---------------------CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCc
Q 015951 211 --GALSKLMKMVKS---------------------SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF 267 (397)
Q Consensus 211 --g~lp~Ll~LL~s---------------------~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~ 267 (397)
..--.++++|-. ++.-+|..|+.|++.+..+++ +........|.+++.+.
T Consensus 443 ~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~-----~l~~sI~vllkRc~~D~-- 515 (865)
T KOG1078|consen 443 FTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDV-----VLLPSILVLLKRCLNDS-- 515 (865)
T ss_pred chHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC-----CccccHHHHHHHHhcCc--
Confidence 111223333321 123356778888887753333 33345567888998876
Q ss_pred cHHHHHHHHHHHHHHhh
Q 015951 268 EIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 268 d~klr~kA~~lL~~L~~ 284 (397)
|..+|-+|.+.+.++-.
T Consensus 516 DdevRdrAtf~l~~l~~ 532 (865)
T KOG1078|consen 516 DDEVRDRATFYLKNLEE 532 (865)
T ss_pred hHHHHHHHHHHHHHhhh
Confidence 55699999999999863
No 257
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=61.29 E-value=70 Score=32.71 Aligned_cols=132 Identities=13% Similarity=0.087 Sum_probs=77.1
Q ss_pred CCHHHHHHHHHHHHHHhcCChHH-HHHHHHcCcHHHHHHhhc-CCCH--HHHHHHHHHHHHHhcCChh------------
Q 015951 181 PDTDIRKISAWILGKASQNNPLV-QKQVLELGALSKLMKMVK-SSFV--EEAVKALYTVSSLIRNNLA------------ 244 (397)
Q Consensus 181 ~~~~ir~~Aa~vLg~~aqNNp~~-Q~~vl~~g~lp~Ll~LL~-s~~~--~v~~kAl~ALS~LiR~~~~------------ 244 (397)
....-|..|+..|-.++.+.++. ...+. +.+..+++-.. +++. ..+-.|++.++++.-....
T Consensus 223 d~~TrR~AA~dfl~~L~~~~~~~v~~i~~--~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v 300 (370)
T PF08506_consen 223 DSDTRRRAACDFLRSLCKKFEKQVTSILM--QYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELV 300 (370)
T ss_dssp ---SHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS
T ss_pred ccCCcHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccc
Confidence 44668899999999999754321 22221 23333333222 2222 3355689988887654321
Q ss_pred cHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHH
Q 015951 245 GQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALA 324 (397)
Q Consensus 245 ~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~ 324 (397)
....|+...-++-|. .+.+..+-+|..|+..+..+-.. .. .+.+ .++++.++.+|.+++.-|.--|+.
T Consensus 301 ~v~~Ff~~~v~peL~---~~~~~~piLka~aik~~~~Fr~~----l~---~~~l--~~~~~~l~~~L~~~~~vv~tyAA~ 368 (370)
T PF08506_consen 301 DVVDFFSQHVLPELQ---PDVNSHPILKADAIKFLYTFRNQ----LP---KEQL--LQIFPLLVNHLQSSSYVVHTYAAI 368 (370)
T ss_dssp -HHHHHHHHTCHHHH----SS-S-HHHHHHHHHHHHHHGGG----S----HHHH--HHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred cHHHHHHHHhHHHhc---ccCCCCcchHHHHHHHHHHHHhh----CC---HHHH--HHHHHHHHHHhCCCCcchhhhhhh
Confidence 346666666666665 12223455899999999988642 11 2222 358999999999999888887776
Q ss_pred HH
Q 015951 325 AI 326 (397)
Q Consensus 325 aL 326 (397)
|+
T Consensus 369 ~i 370 (370)
T PF08506_consen 369 AI 370 (370)
T ss_dssp HH
T ss_pred hC
Confidence 64
No 258
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=60.99 E-value=63 Score=35.91 Aligned_cols=105 Identities=14% Similarity=0.128 Sum_probs=72.9
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH-HHHHc------CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC-
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK-QVLEL------GALSKLMKMVKSSFVEEAVKALYTVSSLIRNN- 242 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~-~vl~~------g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~- 242 (397)
+..++.+|++.+-.+|+.-..+.|+++..- .|+ ++.++ ..+..|..-+.+..+-+|.||+..++.+.--+
T Consensus 301 ~~~~~~LLdses~tlRc~~~EicaN~V~~~--~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~s 378 (1128)
T COG5098 301 YEHFDELLDSESFTLRCCFLEICANLVEHF--KKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNS 378 (1128)
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHH--hcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcc
Confidence 567788999999999999999999988531 111 12221 23444555556667788999999999886432
Q ss_pred --hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 243 --LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 243 --~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
+..++. -+....+.+++. ..-+|++|..+++-|..
T Consensus 379 k~~~~r~e-----v~~lv~r~lqDr--ss~VRrnaikl~SkLL~ 415 (1128)
T COG5098 379 KTVGRRHE-----VIRLVGRRLQDR--SSVVRRNAIKLCSKLLM 415 (1128)
T ss_pred cccchHHH-----HHHHHHHHhhhh--hHHHHHHHHHHHHHHHh
Confidence 233333 345666778876 34589999999999876
No 259
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=60.73 E-value=3.1e+02 Score=31.51 Aligned_cols=190 Identities=14% Similarity=0.064 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh
Q 015951 143 EDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 220 (397)
Q Consensus 143 e~k~~AL~~L~~Lve~iDnA~~~~~l--GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL 220 (397)
--|..|+..+-.++. ...+... +-+..|+++....+.++-..-..+|+.+|.-+|+.. ...+....|.++.++
T Consensus 506 ~~ki~a~~~~~~~~~----~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~-as~~skI~P~~i~lF 580 (1005)
T KOG2274|consen 506 PVKISAVRAFCGYCK----VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFA-ASMESKICPLTINLF 580 (1005)
T ss_pred chhHHHHHHHHhccC----ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhh-hhhhcchhHHHHHHH
Confidence 345666666665551 1111111 234455566666788899999999999999888544 345566788888776
Q ss_pred cCC--CHHH---HHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC--ccHHHHHHHHHHHHHHhhchhccCCCC
Q 015951 221 KSS--FVEE---AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS--FEIRLHRKAVSLVGDLAKCQLENMHKV 293 (397)
Q Consensus 221 ~s~--~~~v---~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~--~d~klr~kA~~lL~~L~~~~l~~~~~~ 293 (397)
... ++-+ ..-.+-.|+...-+..+-+..+ ++-|+.+|+.+. ....+..-|+-+|+-+... ..+.
T Consensus 581 ~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~~-----iPslisil~~~~~~~~~~l~~~aidvLttvvr~----tp~p 651 (1005)
T KOG2274|consen 581 LKYSEDPQVASLAQDLFEELLQIAANYGPMQERL-----IPSLISVLQLNADKAPAGLCAIAIDVLTTVLRN----TPSP 651 (1005)
T ss_pred HHhcCCchHHHHHHHHHHHHHHHHHhhcchHHHH-----HHHHHHHHcCcccccCchhhHHHHHHHHHHHhc----CCCC
Confidence 532 3322 2234555555444444545544 688888888652 2244566677777777653 3445
Q ss_pred cchhHHhCCcHHHHHH-hccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChH
Q 015951 294 EPPLFRDRFFLKSVVD-LTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLD 347 (397)
Q Consensus 294 ~~~~l~~~g~v~~Lv~-lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~ 347 (397)
.-..+... ..+++.+ .|.++|+.....+-.||+.+.......-..+...+|.-
T Consensus 652 L~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~ 705 (1005)
T KOG2274|consen 652 LPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN 705 (1005)
T ss_pred ccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence 55445443 3445555 46788999999999999999988765555666666654
No 260
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=60.37 E-value=1.2e+02 Score=26.58 Aligned_cols=93 Identities=18% Similarity=0.159 Sum_probs=63.5
Q ss_pred HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHH-H
Q 015951 229 VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS-V 307 (397)
Q Consensus 229 ~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~-L 307 (397)
-...-.|+-+++..+.... .++..|..=|.++ .+.+++..|..++-.++. +.+..+...+.+..++.. |
T Consensus 19 w~~ileicD~In~~~~~~k-----~a~ralkkRl~~~-~n~~v~l~aL~LLe~~vk----NCG~~fh~eiask~Fl~e~L 88 (141)
T cd03565 19 WGLNMEICDIINETEDGPK-----DAVRALKKRLNGN-KNHKEVMLTLTVLETCVK----NCGHRFHVLVAKKDFIKDVL 88 (141)
T ss_pred HHHHHHHHHHHhCCCCcHH-----HHHHHHHHHHccC-CCHHHHHHHHHHHHHHHH----HccHHHHHHHHHHHhhhHHH
Confidence 3455566666655332211 3455555556532 256788899999998886 456677777888899997 8
Q ss_pred HHhccC---CChHHHHHHHHHHHHHhc
Q 015951 308 VDLTAS---ADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 308 v~lL~~---~d~dv~E~aL~aL~~L~~ 331 (397)
+.++.. .+..|+.+++..+.+.+.
T Consensus 89 ~~~i~~~~~~~~~Vk~kil~li~~W~~ 115 (141)
T cd03565 89 VKLINPKNNPPTIVQEKVLALIQAWAD 115 (141)
T ss_pred HHHHcccCCCcHHHHHHHHHHHHHHHH
Confidence 999863 346899999988887773
No 261
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=60.03 E-value=2.8e+02 Score=30.77 Aligned_cols=192 Identities=15% Similarity=0.144 Sum_probs=103.7
Q ss_pred HHHHHHHhccCCCC--chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHH---HcCcHHHHHHhhc
Q 015951 147 RALQELLILVEPID--NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL---ELGALSKLMKMVK 221 (397)
Q Consensus 147 ~AL~~L~~Lve~iD--nA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl---~~g~lp~Ll~LL~ 221 (397)
..++.+..++.+-+ .-..+..+ ..+..|-.-.++++..|..+|.-++.|.+..-..+. ....+..++..+.
T Consensus 524 ~~~eeil~li~~s~~~~~e~~~~l----~~l~~l~~wp~~~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~ 599 (745)
T KOG0301|consen 524 NGLEEILSLIKNSSHYSSEVLQSL----LALAILLQWPVEMMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN 599 (745)
T ss_pred hhHHHHHHhhcCCCCccchhHHHH----HHHHHHhcCCHHHhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc
Confidence 34555555554333 22233333 223444455788999999999999987654333322 1235666666666
Q ss_pred CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc---CCCccHHHHHHHHHHHHHHhhchhccCCCCcchhH
Q 015951 222 SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG---NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 298 (397)
Q Consensus 222 s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~---s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l 298 (397)
..+..+.-++..|+|+..| +.+++.|... ...+...+. +. .+..++.-.+.+.-|++--.. ..+.
T Consensus 600 -~~~an~ll~vR~L~N~f~~-~~g~~~~~s~--~~~i~~~~~~~~s~-~~knl~ia~atlaln~sv~l~-~~~~------ 667 (745)
T KOG0301|consen 600 -ADPANQLLVVRCLANLFSN-PAGRELFMSR--LESILDPVIEASSL-SNKNLQIALATLALNYSVLLI-QDNE------ 667 (745)
T ss_pred -cchhHHHHHHHHHHHhccC-HHHHHHHHHH--HHHHhhhhhhhhcc-cchhHHHHHHHHHHHHHHHHH-hccc------
Confidence 3455677888899998766 7777777654 333333221 11 122344444444444432110 0111
Q ss_pred HhCCcHHHHHHhc----cC-CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHH
Q 015951 299 RDRFFLKSVVDLT----AS-ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ 356 (397)
Q Consensus 299 ~~~g~v~~Lv~lL----~~-~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~ 356 (397)
+.+.++.+...+ .. +|....-..+.||.+|+..... ...+.+..+.+....++++.
T Consensus 668 -~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~-~~~~A~~~~v~sia~~~~~~ 728 (745)
T KOG0301|consen 668 -QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDAS-VIQLAKNRSVDSIAKKLKEA 728 (745)
T ss_pred -ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHH-HHHHHHhcCHHHHHHHHHHh
Confidence 124444444333 22 2444455778888888887653 34455566777777666554
No 262
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.92 E-value=82 Score=33.39 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=51.6
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCChH-HHHHHHHcCcHHHHHHhhcCC-C-HHHHHHHHHHHHH
Q 015951 174 LVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKSS-F-VEEAVKALYTVSS 237 (397)
Q Consensus 174 Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~-~Q~~vl~~g~lp~Ll~LL~s~-~-~~v~~kAl~ALS~ 237 (397)
|-+-|++.++.++..|..+|-++++|+-. +...|.+.++++.+|++.... . ..||.|++..|=.
T Consensus 43 lkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~ 109 (470)
T KOG1087|consen 43 LKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDT 109 (470)
T ss_pred HHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHH
Confidence 33456777779999999999999999654 666888999999999999876 3 4789888877654
No 263
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=59.81 E-value=1.1e+02 Score=34.46 Aligned_cols=140 Identities=15% Similarity=0.112 Sum_probs=93.3
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcH
Q 015951 176 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 255 (397)
Q Consensus 176 ~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi 255 (397)
..|.+...+||.+|+..+..++.-.- +++... -.+|.++.+...++=-.|...+++|..++--+ -+.|....=+
T Consensus 525 ~~l~d~v~~Ir~~aa~~l~~l~~~~G--~~w~~~-~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~---g~ei~~~~Ll 598 (759)
T KOG0211|consen 525 TWLPDHVYSIREAAARNLPALVETFG--SEWARL-EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVL---GQEITCEDLL 598 (759)
T ss_pred hhhhhhHHHHHHHHHHHhHHHHHHhC--cchhHH-HhhHHHHHHhcCcccchhhHHHHHHHHHHHHh---ccHHHHHHHh
Confidence 34555567899999999998886443 333332 36888888887765556777777777654321 1234444556
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951 256 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 256 ~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 331 (397)
+.+.++..++ ...+|.+++..+..+.. -......+.-+.+.+..+-...|.+++-.|..|...+..
T Consensus 599 p~~~~l~~D~--vanVR~nvak~L~~i~~--------~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a~~~i~l 664 (759)
T KOG0211|consen 599 PVFLDLVKDP--VANVRINVAKHLPKILK--------LLDESVRDEEVLPLLETLSSDQELDVRYRAILAFGSIEL 664 (759)
T ss_pred HHHHHhccCC--chhhhhhHHHHHHHHHh--------hcchHHHHHHHHHHHHHhccCcccchhHHHHHHHHHHHH
Confidence 7777777776 34578899999998864 222344555666666667677788899888877776663
No 264
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=59.03 E-value=31 Score=39.50 Aligned_cols=103 Identities=13% Similarity=0.156 Sum_probs=68.4
Q ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951 171 LSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 249 (397)
Q Consensus 171 l~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f 249 (397)
+|.+++-| .++...||-+-.-++|-+|..-. ++.+ -.+|.+-.-|.++++-+|+.++--|++++ +..|
T Consensus 970 ~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YT----am~d-~YiP~I~~~L~Dp~~iVRrqt~ilL~rLL------q~~~ 1038 (1529)
T KOG0413|consen 970 MPMLVKELEYNTAHAIRNNIVLAMGDICSSYT----AMTD-RYIPMIAASLCDPSVIVRRQTIILLARLL------QFGI 1038 (1529)
T ss_pred HHHHHHHHHhhhHHHHhcceeeeehhhHHHHH----HHHH-HhhHHHHHHhcCchHHHHHHHHHHHHHHH------hhhh
Confidence 44455444 33445555555555555553211 1222 47999999999988889999999999987 3567
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 250 ~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
++-+|.-.+.-++..-..+.+++.-|-|+++.+..
T Consensus 1039 vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~ 1073 (1529)
T KOG0413|consen 1039 VKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQ 1073 (1529)
T ss_pred hhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHh
Confidence 77788665555544222356789999999999985
No 265
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=59.02 E-value=14 Score=31.17 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=34.1
Q ss_pred HHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHH
Q 015951 147 RALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKI 188 (397)
Q Consensus 147 ~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~ 188 (397)
..+..|..+....+.=-.|+++|+++.|+.+|.|+|.+|...
T Consensus 65 ~~Ik~l~~La~~P~LYp~lv~l~~v~sL~~LL~HeN~DIai~ 106 (108)
T PF08216_consen 65 EEIKKLSVLATAPELYPELVELGAVPSLLGLLSHENTDIAID 106 (108)
T ss_pred HHHHHHHHccCChhHHHHHHHcCCHHHHHHHHCCCCcceehc
Confidence 445666666677788788999999999999999999887543
No 266
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=58.38 E-value=1.3e+02 Score=29.30 Aligned_cols=44 Identities=11% Similarity=0.183 Sum_probs=35.3
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHH-HHHHHcCcH
Q 015951 170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ-KQVLELGAL 213 (397)
Q Consensus 170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q-~~vl~~g~l 213 (397)
-+|+++.++.+.++++|..++.++..+.++.+... ..+...|..
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~ 164 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLF 164 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChH
Confidence 47888899999999999999999999999877655 334455543
No 267
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.53 E-value=1.2e+02 Score=32.22 Aligned_cols=168 Identities=13% Similarity=0.035 Sum_probs=93.2
Q ss_pred HcCcHHHHHHhhc----CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC--cHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015951 209 ELGALSKLMKMVK----SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA--GDLMLQDILGNSSFEIRLHRKAVSLVGDL 282 (397)
Q Consensus 209 ~~g~lp~Ll~LL~----s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g--Gi~~L~~lL~s~~~d~klr~kA~~lL~~L 282 (397)
+.|.+..++..+. +++..+|.-|+..|+++..+-|. ++..++ -+..++..|.++. +..++-.++.+|.-+
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~---kv~th~~~~ldaii~gL~D~~-~~~V~leam~~Lt~v 327 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPD---KVRTHKTTQLDAIIRGLYDDL-NEEVQLEAMKCLTMV 327 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcH---HHHHhHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHH
Confidence 4566655554443 33456788888888888776443 444443 3445555566553 355888888888876
Q ss_pred hhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChH-HHHHHHh--cCChHHHHHHHHHHhHH
Q 015951 283 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT-EALVLKD--FCGLDTALERLRQQLQE 359 (397)
Q Consensus 283 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~-~r~~~~~--~~gL~~~L~~Lr~~~~~ 359 (397)
... ..+.+..+.+. .+.-.+..+..+.+.+++-.+-...+.|+..... ++..|.+ .+++.+++-.|+.....
T Consensus 328 ~~~---~~~~~l~~~~l--~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~ 402 (533)
T KOG2032|consen 328 LEK---ASNDDLESYLL--NIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPY 402 (533)
T ss_pred HHh---hhhcchhhhch--hHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChH
Confidence 532 12333333332 2333455667788889999998888888866322 4443331 13344444333322221
Q ss_pred hh-h--hhhhhhhHHhHHHHHHHHHHHHHHHh
Q 015951 360 VM-L--EEDQRDYAMDVEALRREVELIFFRKL 388 (397)
Q Consensus 360 l~-~--~e~~~~~~~~l~~~~~e~~~~~~~~~ 388 (397)
.. . ++....|.. + .|+|+-.+|++-|
T Consensus 403 va~ACr~~~~~c~p~-l--~rke~~~~~q~~l 431 (533)
T KOG2032|consen 403 VARACRSELRTCYPN-L--VRKELYHLFQESL 431 (533)
T ss_pred HHHHHHHHHHhcCch-h--HHHHHHHHHhhhh
Confidence 11 1 333444443 3 5677777777655
No 268
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=57.51 E-value=2.6e+02 Score=29.70 Aligned_cols=143 Identities=12% Similarity=0.082 Sum_probs=80.2
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc--CCHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCChHH
Q 015951 127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLV 203 (397)
Q Consensus 127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l--GGl~~Li~lL~s~-~~~ir~~Aa~vLg~~aqNNp~~ 203 (397)
++--.+++|.+.. +.-.|.-||..|...+.+-- ..|.+. =.+..+++.-..+ +.-++..+--|+.++++..|..
T Consensus 330 iL~~l~EvL~d~~-~~~~k~laLrvL~~ml~~Q~--~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~ 406 (516)
T KOG2956|consen 330 ILLLLLEVLSDSE-DEIIKKLALRVLREMLTNQP--ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQ 406 (516)
T ss_pred HHHHHHHHHccch-hhHHHHHHHHHHHHHHHhch--HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchh
Confidence 4455667776643 44578889999988775321 112211 1344555555444 4556666667788888887743
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh--cCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015951 204 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV--EAGDLMLQDILGNSSFEIRLHRKAVSLVGD 281 (397)
Q Consensus 204 Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~--~gGi~~L~~lL~s~~~d~klr~kA~~lL~~ 281 (397)
... .+..++-+.+......++-.+--++..- .++.... -.-.|.+++...+. +..+|.-|+|+|-+
T Consensus 407 ~I~--------~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l--~~EeL~~ll~diaP~~iqay~S~--SS~VRKtaVfCLVa 474 (516)
T KOG2956|consen 407 CIV--------NISPLILTADEPRAVAVIKMLTKLFERL--SAEELLNLLPDIAPCVIQAYDST--SSTVRKTAVFCLVA 474 (516)
T ss_pred HHH--------HHhhHHhcCcchHHHHHHHHHHHHHhhc--CHHHHHHhhhhhhhHHHHHhcCc--hHHhhhhHHHhHHH
Confidence 322 2223333334333333333333333221 1222221 35677778888876 44589999999999
Q ss_pred Hhh
Q 015951 282 LAK 284 (397)
Q Consensus 282 L~~ 284 (397)
+..
T Consensus 475 mv~ 477 (516)
T KOG2956|consen 475 MVN 477 (516)
T ss_pred HHH
Confidence 875
No 269
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=57.37 E-value=89 Score=30.42 Aligned_cols=113 Identities=14% Similarity=0.095 Sum_probs=68.5
Q ss_pred HHHhcCCHHHHHHhcCCCC----HHHHHHHHHHHHHHhcCCh----------------------------HHHHHHH---
Q 015951 164 DLSKLGGLSVLVGQLNHPD----TDIRKISAWILGKASQNNP----------------------------LVQKQVL--- 208 (397)
Q Consensus 164 ~~~~lGGl~~Li~lL~s~~----~~ir~~Aa~vLg~~aqNNp----------------------------~~Q~~vl--- 208 (397)
-+.-++.+|.++.-+.+++ ...-..+|..|+.+|.++. ..++.+.
T Consensus 106 l~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~ 185 (262)
T PF14225_consen 106 LFLLLALLPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDH 185 (262)
T ss_pred HHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchh
Confidence 3444566777776666555 1333456677777775421 1122221
Q ss_pred HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015951 209 ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 283 (397)
Q Consensus 209 ~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~ 283 (397)
+...+-.|+.+|.++.+.++.+.+.-|..++.+-..... ....-+.+|.++++++ .-..|...+-...
T Consensus 186 ~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~-----~~~eAL~VLd~~v 253 (262)
T PF14225_consen 186 EFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTD-----LWMEALEVLDEIV 253 (262)
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCc-----cHHHHHHHHHHHH
Confidence 114566678888887788888888888888876443322 3445677888888765 3456666666554
No 270
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=56.59 E-value=2.5e+02 Score=31.69 Aligned_cols=113 Identities=13% Similarity=0.118 Sum_probs=80.6
Q ss_pred HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q 015951 164 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 243 (397)
Q Consensus 164 ~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~ 243 (397)
+.++....+..-++.+..++.+|..++.=+|..++- .+......+.+|.+++|..++.+.||..|.-++-++.....
T Consensus 232 ~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~ 308 (759)
T KOG0211|consen 232 DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD 308 (759)
T ss_pred HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC
Confidence 556666666666777889999999999999998854 55578888999999999999889999888888877765443
Q ss_pred hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015951 244 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 283 (397)
Q Consensus 244 ~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~ 283 (397)
..- =...-+.+.++....++ +.+++..+.-..+.|.
T Consensus 309 ~~~--d~~~~~~~~l~~~~~d~--~~~v~~~~~~~~~~L~ 344 (759)
T KOG0211|consen 309 DDD--DVVKSLTESLVQAVEDG--SWRVSYMVADKFSELS 344 (759)
T ss_pred Cch--hhhhhhhHHHHHHhcCh--hHHHHHHHhhhhhhHH
Confidence 221 11234666677776665 4445555555555554
No 271
>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function. It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).
Probab=53.81 E-value=38 Score=31.38 Aligned_cols=109 Identities=15% Similarity=0.100 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHhcCChhcHHHH---------------HhcCcHHHHHHhhcC---C--CccHHHHHHHHHHHHHHhhc
Q 015951 226 EEAVKALYTVSSLIRNNLAGQEMF---------------YVEAGDLMLQDILGN---S--SFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 226 ~v~~kAl~ALS~LiR~~~~~~~~f---------------~~~gGi~~L~~lL~s---~--~~d~klr~kA~~lL~~L~~~ 285 (397)
...-.++--|||+.|....+...+ .+...+..|+.++.. + +.. .--...+.++.|++.
T Consensus 10 ~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~-~~~~yla~vl~NlS~- 87 (192)
T PF04063_consen 10 PLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKK-DNYDYLASVLANLSQ- 87 (192)
T ss_pred chHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCC-cchhHHHHHHHHhcC-
Confidence 345566677777777544332122 122356677777654 1 111 124467788888875
Q ss_pred hhccCCCCcchhHHhC--Cc--HHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951 286 QLENMHKVEPPLFRDR--FF--LKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 341 (397)
Q Consensus 286 ~l~~~~~~~~~~l~~~--g~--v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~ 341 (397)
.+.-+.+|.+. +. +..|+..+.+.+.--|.-++.+|.|++=+.+.+...+.
T Consensus 88 -----~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~ 142 (192)
T PF04063_consen 88 -----LPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLS 142 (192)
T ss_pred -----CHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcC
Confidence 56677777654 34 77788888888888888999999999988765554454
No 272
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=53.57 E-value=1.3e+02 Score=24.86 Aligned_cols=66 Identities=17% Similarity=0.112 Sum_probs=47.9
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHH
Q 015951 173 VLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSL 238 (397)
Q Consensus 173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s------~~~~v~~kAl~ALS~L 238 (397)
.|..-|+++++.++-.|..+|=.+++|. +.++..+.....+..+++.... .+..+|.++++.+...
T Consensus 41 ~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 41 AIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 3444567778999999999999999985 5688888887777777664111 1357888888876543
No 273
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=50.11 E-value=3.2e+02 Score=30.44 Aligned_cols=118 Identities=18% Similarity=0.065 Sum_probs=78.2
Q ss_pred CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHh-cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHh
Q 015951 141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ-LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 219 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~l-L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~L 219 (397)
+...+..+|..+--..+.+| -.+++--.+|.|-.+ +.+++..++..++-|++.++|+ ++...-..-++++.+.
T Consensus 402 ~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~----lD~~~v~d~~lpi~~~ 475 (700)
T KOG2137|consen 402 DVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQR----LDKAAVLDELLPILKC 475 (700)
T ss_pred chhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHH----HHHHHhHHHHHHHHHH
Confidence 34455667888777778888 566777777877764 5788999999999999999954 3332222345566666
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015951 220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 265 (397)
Q Consensus 220 L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 265 (397)
.+..++.+....+...-++.-..+.+ ..+..++.++.++.+...+
T Consensus 476 ~~~~dp~iv~~~~~i~~~l~~~~~~g-~ev~~~~VlPlli~ls~~~ 520 (700)
T KOG2137|consen 476 IKTRDPAIVMGFLRIYEALALIIYSG-VEVMAENVLPLLIPLSVAP 520 (700)
T ss_pred hcCCCcHHHHHHHHHHHHHHhhcccc-eeeehhhhhhhhhhhhhcc
Confidence 66666666554444444443333333 5666677888888877654
No 274
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=49.72 E-value=1.5e+02 Score=26.94 Aligned_cols=66 Identities=17% Similarity=0.199 Sum_probs=52.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
.++.++++.-+++..+|..|+.-|..++|..--+-. -.++.|+.+..++ +..++.+|..++..+..
T Consensus 9 yl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~--~~~ir~~A~~~l~~l~e 74 (187)
T PF12830_consen 9 YLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSP--NPSIRSRAYQLLKELHE 74 (187)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCC--ChHHHHHHHHHHHHHHH
Confidence 578889988888999999999999999886322222 2568888888876 66799999999999975
No 275
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=49.33 E-value=1.8e+02 Score=29.71 Aligned_cols=94 Identities=16% Similarity=0.044 Sum_probs=58.1
Q ss_pred CCCCCHHHHHHHHHHHHhccCCCCch-------------hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHH
Q 015951 137 NSTLSLEDSQRALQELLILVEPIDNA-------------NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 203 (397)
Q Consensus 137 ~~~~s~e~k~~AL~~L~~Lve~iDnA-------------~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~ 203 (397)
++......|..|+.-+.-+....... .+|...--+|-|. -=.+..|=+|..|++.+.+....=|+
T Consensus 264 ~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~~- 341 (370)
T PF08506_consen 264 NPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLPK- 341 (370)
T ss_dssp -TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS-H-
T ss_pred CCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCCH-
Confidence 45556677888888777766554322 2222222333332 11246788999999999999865442
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHH
Q 015951 204 QKQVLELGALSKLMKMVKSSFVEEAVKALYTV 235 (397)
Q Consensus 204 Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~AL 235 (397)
+.+. +.+|.++..|.+++..|+.-|.+||
T Consensus 342 -~~l~--~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 342 -EQLL--QIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp -HHHH--HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred -HHHH--HHHHHHHHHhCCCCcchhhhhhhhC
Confidence 3333 4899999999998888888888775
No 276
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=48.89 E-value=1.1e+02 Score=25.74 Aligned_cols=78 Identities=13% Similarity=0.132 Sum_probs=45.8
Q ss_pred cHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHH----hhhhhhhhhhHHhHHHHHH
Q 015951 303 FLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQE----VMLEEDQRDYAMDVEALRR 378 (397)
Q Consensus 303 ~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~----l~~~e~~~~~~~~l~~~~~ 378 (397)
+++.|+.-|..++++|...|+..|....... .+-..+. .+.+.+..|...-.. ..+....-.|..+...+.+
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~-~~le~~v---~~~p~l~~L~~~g~~Ll~~~lS~~~Gf~~L~~~~~v~~ 84 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK-EYLEYLV---SLRPSLDHLGDIGSPLLLRFLSTPSGFRYLNEIGYVEK 84 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch-hhHHHHH---HcCcHHHHHHHcCHHHHHHHHcchHHHHHhcchhHHHH
Confidence 4677888898889999999999998888775 3333333 223333333322111 2233334446666555666
Q ss_pred HHHHHH
Q 015951 379 EVELIF 384 (397)
Q Consensus 379 e~~~~~ 384 (397)
|++.=+
T Consensus 85 El~~W~ 90 (115)
T PF14663_consen 85 ELDKWF 90 (115)
T ss_pred HHHHHH
Confidence 665544
No 277
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=48.84 E-value=39 Score=31.10 Aligned_cols=69 Identities=16% Similarity=0.126 Sum_probs=51.5
Q ss_pred HHHHhcCC-CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH----HhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015951 173 VLVGQLNH-PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM----KMVKSSFVEEAVKALYTVSSLIRNNLA 244 (397)
Q Consensus 173 ~Li~lL~s-~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll----~LL~s~~~~v~~kAl~ALS~LiR~~~~ 244 (397)
.|+..|.+ .++.+......|++.++||.|..+-. .|.++.++ .++.+.+.+++..++.++++++.-.++
T Consensus 105 ~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~---~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~~~ 178 (182)
T PF13251_consen 105 GLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLP---PGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQPP 178 (182)
T ss_pred HHHHHHhcccccHHHHHHHHHHHHHHccCChhhcC---HhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCCC
Confidence 34455543 57888999999999999999987653 46666655 455676778999999999998765443
No 278
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=48.22 E-value=3.6e+02 Score=30.26 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC
Q 015951 185 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 264 (397)
Q Consensus 185 ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s 264 (397)
|-.-++..+..+=|-.+.. .++ .|.+..|++-..+.+..||-..+.-|.-+.-.+...-+.+++.=--.++.++..
T Consensus 62 Il~fla~fv~sl~q~d~e~--DlV-~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~D- 137 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDKEE--DLV-AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKD- 137 (892)
T ss_pred HHHHHHHHHHhhhccCchh--hHH-HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhc-
Confidence 3334444555554433221 122 357778888888888889999988888776544333333332212234445444
Q ss_pred CCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCCh
Q 015951 265 SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 265 ~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~~ 334 (397)
. .+.+|..|+++|+.+=.. ..++ +..++..+..++.++ ++.||..|+. ++.-++.
T Consensus 138 r--ep~VRiqAv~aLsrlQ~d---~~de-------e~~v~n~l~~liqnDpS~EVRRaaLs---nI~vdns 193 (892)
T KOG2025|consen 138 R--EPNVRIQAVLALSRLQGD---PKDE-------ECPVVNLLKDLIQNDPSDEVRRAALS---NISVDNS 193 (892)
T ss_pred c--CchHHHHHHHHHHHHhcC---CCCC-------cccHHHHHHHHHhcCCcHHHHHHHHH---hhccCcc
Confidence 3 345899999999998521 1121 235667777887664 7899988874 5555444
No 279
>PF09758 FPL: Uncharacterised conserved protein; InterPro: IPR019155 The proteins in this family are functionally uncharacterised. They contain a highly conserved FPL motif.
Probab=47.64 E-value=1.2e+02 Score=27.02 Aligned_cols=126 Identities=16% Similarity=0.128 Sum_probs=84.4
Q ss_pred cCChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcC--ChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHH
Q 015951 198 QNNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRN--NLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRK 274 (397)
Q Consensus 198 qNNp~~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~--~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~k 274 (397)
||+|.+=+.++|.+.+..+++++.. .+..++...+..+|-++.+ ++.+..-+...+-+.-++..--+-+ +..+..-
T Consensus 13 q~~~~~Fd~F~E~nil~~f~~il~~~~~~~V~~QlLQtlsiLiqNi~~~~slyyllSnn~iN~iI~~~~d~~-~ee~l~y 91 (149)
T PF09758_consen 13 QNDPSFFDFFMEKNILSTFVRILKQSRSSSVKLQLLQTLSILIQNIRSETSLYYLLSNNHINEIITYPFDFS-DEEVLSY 91 (149)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhcCCCcceEEEecchHHHHHHhcCCCCC-cchhHHH
Confidence 7899999999999999999999998 3467899999999998876 4445555567777777777644332 3347777
Q ss_pred HHHHHHHHhhchhccCCCCcchhHHh--CC---cHHHHHHhccCCChHHHHHHHHHHHH
Q 015951 275 AVSLVGDLAKCQLENMHKVEPPLFRD--RF---FLKSVVDLTASADLDLQEKALAAIKN 328 (397)
Q Consensus 275 A~~lL~~L~~~~l~~~~~~~~~~l~~--~g---~v~~Lv~lL~~~d~dv~E~aL~aL~~ 328 (397)
=+.+|..|+.- -++.....+.. .+ +...-+.+.+++|.=+|-.+-..+.+
T Consensus 92 YIsfLK~lSlk----ln~~tv~fffn~~~~~FPL~~~aikf~~h~d~Mvr~avR~i~Ln 146 (149)
T PF09758_consen 92 YISFLKTLSLK----LNKDTVQFFFNERNDSFPLYTEAIKFYNHPDSMVRTAVRTITLN 146 (149)
T ss_pred HHHHHHHHHhh----cCCCceeEeEecCCCCCCcHHHHHHhhcCcchHHHHHHHHHHHh
Confidence 78888888752 24433333322 12 23333556777776555554443333
No 280
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=47.46 E-value=96 Score=25.57 Aligned_cols=89 Identities=16% Similarity=0.229 Sum_probs=60.7
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHH
Q 015951 180 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 259 (397)
Q Consensus 180 s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~ 259 (397)
.+.+.|+..+.|++.+.-. -. ..+..+.+-+...++.-+..++|-+-+++++...-...+......+.+.
T Consensus 16 ~S~~~I~~lt~~a~~~~~~-----a~-----~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~ 85 (114)
T cd03562 16 NSQPSIQTLTKLAIENRKH-----AK-----EIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFL 85 (114)
T ss_pred ccHHHHHHHHHHHHHHHHH-----HH-----HHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 3678888888888887621 11 2334445555555667788999999999999755555555556688888
Q ss_pred HhhcCCCccHHHHHHHHHHHH
Q 015951 260 DILGNSSFEIRLHRKAVSLVG 280 (397)
Q Consensus 260 ~lL~s~~~d~klr~kA~~lL~ 280 (397)
...... +..+|.|...++.
T Consensus 86 ~~~~~~--~~~~r~kl~rl~~ 104 (114)
T cd03562 86 DAYEKV--DEKTRKKLERLLN 104 (114)
T ss_pred HHHHhC--CHHHHHHHHHHHH
Confidence 887754 5667777666554
No 281
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=46.81 E-value=4.8e+02 Score=29.60 Aligned_cols=73 Identities=22% Similarity=0.228 Sum_probs=51.7
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCC
Q 015951 212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 291 (397)
Q Consensus 212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~ 291 (397)
.|..|..+-...-.+++.+++..|-.++.+-|..... -+..|+.-|.++ +.|+-.+|..+|..|.. .|
T Consensus 305 fievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDp--qnKiaskAsylL~~L~~-----~H 372 (988)
T KOG2038|consen 305 FIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDP--QNKIASKASYLLEGLLA-----KH 372 (988)
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCc--chhhhhhHHHHHHHHHh-----hC
Confidence 3444444444433688999999999999988874443 356677888877 56889999999998874 46
Q ss_pred CCcch
Q 015951 292 KVEPP 296 (397)
Q Consensus 292 ~~~~~ 296 (397)
|..+.
T Consensus 373 PnMK~ 377 (988)
T KOG2038|consen 373 PNMKI 377 (988)
T ss_pred Cccee
Confidence 65543
No 282
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=46.59 E-value=4.8e+02 Score=29.54 Aligned_cols=151 Identities=15% Similarity=0.072 Sum_probs=87.3
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcC-C----C---CHHHHHHHHHHHH
Q 015951 123 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-H----P---DTDIRKISAWILG 194 (397)
Q Consensus 123 ~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~-s----~---~~~ir~~Aa~vLg 194 (397)
|+.+.+.+-++...+.. +++. +|+.-+--+... .--..| .|-++-++..|+ + + ++--...|.+.++
T Consensus 368 Dp~eyirry~df~d~g~-spdl--aal~fl~~~~sK-rke~Tf--qgiLsf~~sil~qsaa~psn~dnarq~egalr~la 441 (970)
T COG5656 368 DPDEYIRRYYDFFDNGL-SPDL--AALFFLIISKSK-RKEETF--QGILSFLLSILGQSAATPSNIDNARQAEGALRLLA 441 (970)
T ss_pred CHHHHHHHhcchhcCCC-ChhH--HHHHHHHHHhcc-cchhhh--hhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHH
Confidence 56677777777777654 3332 222222211111 101111 244555556662 1 1 2223345666666
Q ss_pred HHhc--CChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHH
Q 015951 195 KASQ--NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLH 272 (397)
Q Consensus 195 ~~aq--NNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr 272 (397)
++.. .-+..-..++++=.+++++--+++..--++.+|++-+|-+--+++.. -+-...++....++++. +..++
T Consensus 442 si~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDfkd~---~ill~aye~t~ncl~nn--~lpv~ 516 (970)
T COG5656 442 SIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDFKDN---GILLEAYENTHNCLKNN--HLPVM 516 (970)
T ss_pred HHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhcccc---hHHHHHHHHHHHHHhcC--Ccchh
Confidence 6553 22223344555556677777777766667999999999886555543 23345667778888875 45588
Q ss_pred HHHHHHHHHHhh
Q 015951 273 RKAVSLVGDLAK 284 (397)
Q Consensus 273 ~kA~~lL~~L~~ 284 (397)
..|+-++.-+..
T Consensus 517 ieAalAlq~fi~ 528 (970)
T COG5656 517 IEAALALQFFIF 528 (970)
T ss_pred hhHHHHHHHHHh
Confidence 899999998886
No 283
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=46.54 E-value=1.2e+02 Score=31.49 Aligned_cols=87 Identities=16% Similarity=0.154 Sum_probs=61.5
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-HHHHHHH
Q 015951 131 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLE 209 (397)
Q Consensus 131 ~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~-~Q~~vl~ 209 (397)
++....+...+.|+=...|+....+-++.|++++ ++..|..=|++.++.|.-.|..+++.++.|+.+ .+..|-.
T Consensus 12 ~v~KAT~e~nT~enW~~IlDvCD~v~~~~~~~kd-----~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsS 86 (462)
T KOG2199|consen 12 DVEKATDEKNTSENWSLILDVCDKVGSDPDGGKD-----CLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSS 86 (462)
T ss_pred HHHHhcCcccccccHHHHHHHHHhhcCCCcccHH-----HHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhh
Confidence 3344444444445544555555555566777765 455677889999999999999999999998654 5555666
Q ss_pred cCcHHHHHHhhcC
Q 015951 210 LGALSKLMKMVKS 222 (397)
Q Consensus 210 ~g~lp~Ll~LL~s 222 (397)
......|..++.+
T Consensus 87 r~F~~el~al~~~ 99 (462)
T KOG2199|consen 87 RDFTTELRALIES 99 (462)
T ss_pred hhHHHHHHHHHhh
Confidence 7788888888885
No 284
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=46.35 E-value=1.2e+02 Score=25.32 Aligned_cols=71 Identities=13% Similarity=0.189 Sum_probs=49.0
Q ss_pred HHHHHHHHhhCCC--CCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCh
Q 015951 127 LIQIAIDDLNNST--LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNP 201 (397)
Q Consensus 127 lmk~~i~~L~~~~--~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s--~~~~ir~~Aa~vLg~~aqNNp 201 (397)
+|...-+.+.+.. .+..+|..++..+.+++.- +.. +-....|.+..+|.+ ..+++|..|..|-....+.=+
T Consensus 12 il~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~---~g~-~i~~a~pQI~acL~saL~~~eL~~~al~~W~~~i~~L~ 86 (107)
T smart00802 12 ILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKL---MGK-HISSALPQIMACLQSALEIPELRSLALRCWHVLIKTLK 86 (107)
T ss_pred HHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHH---HHH-HHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhCC
Confidence 3444445565555 5778999999999998873 221 122467777788866 578899988888888776533
No 285
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=46.26 E-value=1.4e+02 Score=29.12 Aligned_cols=118 Identities=13% Similarity=0.074 Sum_probs=69.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH-HHHHhcCcHHHHHHhhcC----------CCccHHHHHHHHHHHH
Q 015951 212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ-EMFYVEAGDLMLQDILGN----------SSFEIRLHRKAVSLVG 280 (397)
Q Consensus 212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~-~~f~~~gGi~~L~~lL~s----------~~~d~klr~kA~~lL~ 280 (397)
.+|.++.++++.++++|.+++..+..++.+.+... ..+...|=.+++.+.+.. ......+-..|--++.
T Consensus 120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L~ 199 (282)
T PF10521_consen 120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPALL 199 (282)
T ss_pred HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHHH
Confidence 68999999999999999999999999998776644 235566655555444321 1134567777777787
Q ss_pred HHhhchhccCCCCc----chhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951 281 DLAKCQLENMHKVE----PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 330 (397)
Q Consensus 281 ~L~~~~l~~~~~~~----~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 330 (397)
.|+.-.. ..+... ...+..+|++..+...-+.+.+.++...+..+..+.
T Consensus 200 ~L~~~~~-~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i 252 (282)
T PF10521_consen 200 SLLKTQE-NDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPII 252 (282)
T ss_pred HHHHhhc-cCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHH
Confidence 7764210 011111 122233333333222222234666666665555554
No 286
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=46.17 E-value=1.7e+02 Score=26.29 Aligned_cols=96 Identities=17% Similarity=0.223 Sum_probs=42.3
Q ss_pred ccCCCCHHHHHHhHHHHHHHHHhcCCC-CHHHHHHHHHHHhhCCCCCHHHHHHH--HHHHHh---ccCCCCchhHHHh--
Q 015951 96 DVQRLSPSELKKRQMEIKELMEKLKTP-SDAQLIQIAIDDLNNSTLSLEDSQRA--LQELLI---LVEPIDNANDLSK-- 167 (397)
Q Consensus 96 ~~~~~s~e~l~~r~~~L~ea~~~~~~~-~d~~lmk~~i~~L~~~~~s~e~k~~A--L~~L~~---Lve~iDnA~~~~~-- 167 (397)
++.|++.+.. ..|-+.++. .| .+.+.+.+++.-=-.+++++-.++.| |..+.. -+.-|+-...+.-
T Consensus 15 pPlPL~a~Qt----~~lielLk~--~~~~~~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLG 88 (154)
T PF11791_consen 15 PPLPLNAEQT----AELIELLKN--PPAGEEAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLG 88 (154)
T ss_dssp ------HHHH----HHHHHHHHS----TT-HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHT
T ss_pred CCCCCCHHHH----HHHHHHHhC--CCCccHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHh
Confidence 4456776543 234444432 22 23333333333323455665555544 444432 1222343333332
Q ss_pred -c-CC--HHHHHHhcCCCCHHHHHHHHHHHHHHh
Q 015951 168 -L-GG--LSVLVGQLNHPDTDIRKISAWILGKAS 197 (397)
Q Consensus 168 -l-GG--l~~Li~lL~s~~~~ir~~Aa~vLg~~a 197 (397)
| || +.+||.+|.+.++++...|+.+|.+..
T Consensus 89 tM~GGYNV~~LI~~L~~~d~~lA~~Aa~aLk~Tl 122 (154)
T PF11791_consen 89 TMLGGYNVQPLIDLLKSDDEELAEEAAEALKNTL 122 (154)
T ss_dssp TS-SSTTHHHHHHGG--G-TTTHHHHHHHHHT--
T ss_pred hccCCCcHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 2 66 889999999999999999999987543
No 287
>PF04510 DUF577: Family of unknown function (DUF577); InterPro: IPR007598 This is a family of Arabidopsis thaliana (Mouse-ear cress) proteins. Many of these members contain a repeated region.
Probab=45.83 E-value=2.3e+02 Score=26.00 Aligned_cols=89 Identities=17% Similarity=0.070 Sum_probs=52.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHH-HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh-cCChhcHHHH
Q 015951 172 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV-LELGALSKLMKMVKSSFVEEAVKALYTVSSLI-RNNLAGQEMF 249 (397)
Q Consensus 172 ~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~v-l~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~Li-R~~~~~~~~f 249 (397)
|.|+.||+..+ ++.....+|+.++.. -+.+.+ ...|+.+-|.+.+-+.+.....||.+-..+|. .-+......|
T Consensus 6 plLIsCL~~q~--~k~s~~KiL~~iVs~--Va~~v~~~~~~~W~eL~d~Ils~~~~e~~kA~~IF~~L~~~l~~efl~~~ 81 (174)
T PF04510_consen 6 PLLISCLTMQE--TKESDFKILRRIVSH--VAYEVFDLQEGGWDELSDCILSLSENEPVKAFHIFICLPMPLYGEFLIPF 81 (174)
T ss_pred HHHHHHHHhhc--ccHhHHHHHHHHHHH--HHHHHHhcCCCCchhHHHHHHHhhccchHHHHHHHHhCCchhhhhHHHHH
Confidence 45678997532 334445555555532 122222 46688899988887755455688999888885 3333334444
Q ss_pred HhcCcHHHHHHhhcCC
Q 015951 250 YVEAGDLMLQDILGNS 265 (397)
Q Consensus 250 ~~~gGi~~L~~lL~s~ 265 (397)
.+. -++...+.|.+|
T Consensus 82 ~~~-L~~~~~~~L~~p 96 (174)
T PF04510_consen 82 MEN-LLPEISKVLLPP 96 (174)
T ss_pred HHH-HHHHHHHHcCCc
Confidence 433 555555666655
No 288
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=45.81 E-value=1.1e+02 Score=32.56 Aligned_cols=161 Identities=15% Similarity=0.091 Sum_probs=93.9
Q ss_pred HHHhcCC-CCHHHHHHHHHHHhh--C--C-----CCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCC--C
Q 015951 115 LMEKLKT-PSDAQLIQIAIDDLN--N--S-----TLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP--D 182 (397)
Q Consensus 115 a~~~~~~-~~d~~lmk~~i~~L~--~--~-----~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~--~ 182 (397)
.++.+.+ -+|.+++..++..+. . + -.++.-|...|.-|. ..+--++.+- ..+..+-..|.++ +
T Consensus 260 ~LKr~~~~~ed~~~V~~L~~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~---kS~~Aa~~~~--~~~~i~~~~l~~~~~~ 334 (501)
T PF13001_consen 260 LLKRLSVSLEDPDLVDRLFDLYLGKGIPPENGRPPASPRLQEKILSLLS---KSVIAATSFP--NILQIVFDGLYSDNTN 334 (501)
T ss_pred HHhhcCCCCCCHHHHHHHHHHHHhcCCchhcCCCCCCHHHHHHHHHHHH---HhHHHHhCCc--cHHHHHhccccCCccc
Confidence 3444433 368899999999988 3 1 123444545555443 3333233221 2334444567666 7
Q ss_pred HHHHHHHHHHH---HHHhcCChHHHHHHHHcCcHHHHHHhhc--------CCCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015951 183 TDIRKISAWIL---GKASQNNPLVQKQVLELGALSKLMKMVK--------SSFVEEAVKALYTVSSLIRNNLAGQEMFYV 251 (397)
Q Consensus 183 ~~ir~~Aa~vL---g~~aqNNp~~Q~~vl~~g~lp~Ll~LL~--------s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~ 251 (397)
..+|..+...+ .....+.+..+-.-+....+..+..++. +++.+.|..+--+||.+.+..|.... -+
T Consensus 335 ~klk~~~l~F~~~~~~~~~~~~~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~--~d 412 (501)
T PF13001_consen 335 SKLKSLALQFIRGSSWIFKHISPQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFS--KD 412 (501)
T ss_pred cccchhcchhhhcchHHhhhcCHHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCccccc--cc
Confidence 88999998888 7776665544443333323333333332 22356799999999999998876421 12
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 252 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 252 ~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
.+-+..|..-|.++ +..++...-.+|+.|+.
T Consensus 413 ~~li~~LF~sL~~~--~~evr~sIqeALssl~~ 443 (501)
T PF13001_consen 413 LSLIEFLFDSLEDE--SPEVRVSIQEALSSLAP 443 (501)
T ss_pred HHHHHHHHHHhhCc--chHHHHHHHHHHHHHHH
Confidence 23444445555444 44577788888888875
No 289
>PF06012 DUF908: Domain of Unknown Function (DUF908); InterPro: IPR010309 This is a domain of unknown function found at the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing. This domain is found in association with and immediately N-terminal to another domain of unknown function: IPR010314 from INTERPRO.
Probab=45.73 E-value=93 Score=31.11 Aligned_cols=75 Identities=17% Similarity=0.190 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhccCCCCchhHHHhcC--CHHHHHHhcCCC---CHHHHHHHHHHHHHHhcCChHHHHHHHH------cCc
Q 015951 144 DSQRALQELLILVEPIDNANDLSKLG--GLSVLVGQLNHP---DTDIRKISAWILGKASQNNPLVQKQVLE------LGA 212 (397)
Q Consensus 144 ~k~~AL~~L~~Lve~iDnA~~~~~lG--Gl~~Li~lL~s~---~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~------~g~ 212 (397)
.|..|+-.+.+..-+-+....|...+ .+..|++++..+ ...+|..|..+|..+++..+.+.+.+-. +|.
T Consensus 238 iRllAi~~l~~~~~~~~~~~~~l~~dp~l~~eL~eLi~~~~~v~~~i~~~Al~~L~ai~~~~~~~~~V~~aLg~~v~HGi 317 (329)
T PF06012_consen 238 IRLLAIANLVYIHPESQFSSKLLEQDPELVNELVELISPEEKVPMDIQTAALRALEAISHKRPRCSDVLRALGANVSHGI 317 (329)
T ss_pred HHHHHHHHHHhhCCCHHHHHHHHhcChHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHhccccHHHHHHHhcCCCCccc
Confidence 34456666655554555566666666 788888988654 4789999999999999998888776554 366
Q ss_pred HHHHHH
Q 015951 213 LSKLMK 218 (397)
Q Consensus 213 lp~Ll~ 218 (397)
++.+++
T Consensus 318 L~~llR 323 (329)
T PF06012_consen 318 LPQLLR 323 (329)
T ss_pred HHHHHH
Confidence 777765
No 290
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=44.68 E-value=2.8e+02 Score=26.21 Aligned_cols=139 Identities=16% Similarity=0.013 Sum_probs=84.1
Q ss_pred HHHHHH-hcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015951 171 LSVLVG-QLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 248 (397)
Q Consensus 171 l~~Li~-lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~ 248 (397)
++.++. +-+..+++++......|...+.++ + +. .-++..|..+.+.+....+.-++..+..+...++...
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~-~~-----~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f-- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNV-CV-----PPVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF-- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCcc-ch-----hHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH--
Confidence 455554 457789999999999999999876 2 11 1234556666666655555555566666655444322
Q ss_pred HHhcCcHHHHHHh--------hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc-cCCChHHH
Q 015951 249 FYVEAGDLMLQDI--------LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT-ASADLDLQ 319 (397)
Q Consensus 249 f~~~gGi~~L~~l--------L~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL-~~~d~dv~ 319 (397)
+-+..+... ..+++.......-.+..+.++|.. .|+ .-..+++.+...| ...+..++
T Consensus 74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~-----~p~-----~g~~ll~~ls~~L~~~~~~~~~ 139 (234)
T PF12530_consen 74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCS-----RPD-----HGVDLLPLLSGCLNQSCDEVAQ 139 (234)
T ss_pred ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHh-----Chh-----hHHHHHHHHHHHHhccccHHHH
Confidence 222222222 111222333444446678888863 333 2234677788888 67788888
Q ss_pred HHHHHHHHHHhc
Q 015951 320 EKALAAIKNLLQ 331 (397)
Q Consensus 320 E~aL~aL~~L~~ 331 (397)
.-++.+|..|..
T Consensus 140 alale~l~~Lc~ 151 (234)
T PF12530_consen 140 ALALEALAPLCE 151 (234)
T ss_pred HHHHHHHHHHHH
Confidence 899988888884
No 291
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.49 E-value=3.7e+02 Score=32.73 Aligned_cols=133 Identities=14% Similarity=0.087 Sum_probs=84.5
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc-CCHHHHHHhcCCCCHHHHHH---HHHHHHHHhc----
Q 015951 127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNHPDTDIRKI---SAWILGKASQ---- 198 (397)
Q Consensus 127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l-GGl~~Li~lL~s~~~~ir~~---Aa~vLg~~aq---- 198 (397)
+.++++.-+.+.+. -.|+.++-+|.+|+...|+-....++ .-|..+.+....-.+.+|.. +|.+|+.+|-
T Consensus 1040 Il~eLL~~lt~kew--RVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d 1117 (1702)
T KOG0915|consen 1040 ILDELLVNLTSKEW--RVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICD 1117 (1702)
T ss_pred HHHHHHHhccchhH--HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 33444444444432 35777888899999887765544443 45666666655555677765 4566666552
Q ss_pred -CChHHHHHHHHcCcHHHHHH--hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC
Q 015951 199 -NNPLVQKQVLELGALSKLMK--MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN 264 (397)
Q Consensus 199 -NNp~~Q~~vl~~g~lp~Ll~--LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s 264 (397)
-|+..-+.++. ..+|-|+. ++ |+-.++|.-++..+.-|+.+.+.....+. ..=++.|..++..
T Consensus 1118 ~~~~~~~~~~l~-~iLPfLl~~gim-s~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~ 1183 (1702)
T KOG0915|consen 1118 VTNGAKGKEALD-IILPFLLDEGIM-SKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSE 1183 (1702)
T ss_pred cCCcccHHHHHH-HHHHHHhccCcc-cchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccc
Confidence 24544444554 37888883 45 55678999999999999998876555443 3456666666654
No 292
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=44.23 E-value=39 Score=39.98 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=93.6
Q ss_pred cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH
Q 015951 168 LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 247 (397)
Q Consensus 168 lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~ 247 (397)
+|.+|.|-.-|.+.+...|..|..++|.+.+. +.+|-.=-.-......+.-+.+.+.+||.+++-.++.++-++|....
T Consensus 258 ~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~-~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 258 LAVIPQLEFELLSEQEEVRLKAVKLVGRMFSD-KDSQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc-chhhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 36777777788899999999999999999975 33443300112345555566667789999999999988887776544
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHH
Q 015951 248 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIK 327 (397)
Q Consensus 248 ~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~ 327 (397)
+.. -...|.....+ .+.+++..++........ ..-.++.. ++..+.+.+......||..|...|.
T Consensus 337 ~~~---~~~~l~~~~~D--~~~rir~~v~i~~~~v~~---------~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~La 401 (1266)
T KOG1525|consen 337 AST---ILLALRERDLD--EDVRVRTQVVIVACDVMK---------FKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLA 401 (1266)
T ss_pred HHH---HHHHHHhhcCC--hhhhheeeEEEEEeehhH---------hhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 321 12222222222 233444333322222221 11122333 6777777888888999999999998
Q ss_pred HHhcC
Q 015951 328 NLLQL 332 (397)
Q Consensus 328 ~L~~~ 332 (397)
.+...
T Consensus 402 qlYk~ 406 (1266)
T KOG1525|consen 402 QLYKN 406 (1266)
T ss_pred HHHHH
Confidence 88863
No 293
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=44.07 E-value=1.5e+02 Score=25.45 Aligned_cols=91 Identities=12% Similarity=0.129 Sum_probs=56.0
Q ss_pred HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhC-CcHHHHH
Q 015951 230 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVV 308 (397)
Q Consensus 230 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~-g~v~~Lv 308 (397)
-.+--|+.++++++.....+ ...|..=|+++ +.-++.|++.+|.+||.. +++.++..+.++ -.|+.+.
T Consensus 20 y~~~Eia~~t~~s~~~~~ei-----~d~L~kRL~~~--~~hVK~K~Lrilk~l~~~----G~~~f~~~~~~~~~~Ik~~~ 88 (122)
T cd03572 20 YLYEEIAKLTRKSVGSCQEL-----LEYLLKRLKRS--SPHVKLKVLKIIKHLCEK----GNSDFKRELQRNSAQIRECA 88 (122)
T ss_pred HHHHHHHHHHHcCHHHHHHH-----HHHHHHHhcCC--CCcchHHHHHHHHHHHhh----CCHHHHHHHHHhHHHHHHHH
Confidence 34446777777765544433 45667777765 355788999999999974 455666666544 3444444
Q ss_pred HhccCC--------ChHHHHHHHHHHHHHhc
Q 015951 309 DLTASA--------DLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 309 ~lL~~~--------d~dv~E~aL~aL~~L~~ 331 (397)
+.=..+ ...||+.|-.++..+-+
T Consensus 89 ~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 89 NYKGPPDPLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred HcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence 432222 34677777766666554
No 294
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=42.86 E-value=54 Score=32.20 Aligned_cols=19 Identities=21% Similarity=0.371 Sum_probs=8.8
Q ss_pred cCCCCHHHHHHHHHHHHHH
Q 015951 178 LNHPDTDIRKISAWILGKA 196 (397)
Q Consensus 178 L~s~~~~ir~~Aa~vLg~~ 196 (397)
|..+++-.|-.++.|+|.+
T Consensus 196 l~~~SalfrhEvAfVfGQl 214 (289)
T KOG0567|consen 196 LADDSALFRHEVAFVFGQL 214 (289)
T ss_pred cccchHHHHHHHHHHHhhc
Confidence 3334444555555555444
No 295
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=42.23 E-value=2e+02 Score=32.35 Aligned_cols=93 Identities=18% Similarity=0.226 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHhccCCCCchhH----HHhcC--C---------HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951 142 LEDSQRALQELLILVEPIDNAND----LSKLG--G---------LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 206 (397)
Q Consensus 142 ~e~k~~AL~~L~~Lve~iDnA~~----~~~lG--G---------l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~ 206 (397)
++.|+.+|..|-+++|+-..-.. ++-+| | +.-+.+.+--.+.-+|..|..+++....+++..+.
T Consensus 424 pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l~~- 502 (865)
T KOG1078|consen 424 PDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVLLP- 502 (865)
T ss_pred cchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCccc-
Confidence 57899999999999987554332 22222 0 00011111114567999999999999876664443
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015951 207 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 239 (397)
Q Consensus 207 vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~Li 239 (397)
.....|.+++.+.++++|..|.+++.++-
T Consensus 503 ----sI~vllkRc~~D~DdevRdrAtf~l~~l~ 531 (865)
T KOG1078|consen 503 ----SILVLLKRCLNDSDDEVRDRATFYLKNLE 531 (865)
T ss_pred ----cHHHHHHHHhcCchHHHHHHHHHHHHHhh
Confidence 34556678888888999999999999985
No 296
>smart00567 EZ_HEAT E-Z type HEAT repeats. Present in subunits of cyanobacterial phycocyanin lyase, and other proteins. Probable scaffolding role.
Probab=42.15 E-value=39 Score=20.94 Aligned_cols=28 Identities=25% Similarity=0.440 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcC
Q 015951 184 DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 222 (397)
Q Consensus 184 ~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s 222 (397)
.+|..|++.||.+. +| .+++.|++.+++
T Consensus 2 ~vR~~aa~aLg~~~--~~---------~a~~~L~~~l~d 29 (30)
T smart00567 2 LVRHEAAFALGQLG--DE---------EAVPALIKALED 29 (30)
T ss_pred HHHHHHHHHHHHcC--CH---------hHHHHHHHHhcC
Confidence 58999999999883 34 356666666654
No 297
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=42.09 E-value=3.2e+02 Score=33.17 Aligned_cols=136 Identities=20% Similarity=0.168 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHhc---CChHHHHHHHHcCcHHHHHHhhcCC---C-----HHHHHHHHHHHHHHhcCChhc--------
Q 015951 185 IRKISAWILGKASQ---NNPLVQKQVLELGALSKLMKMVKSS---F-----VEEAVKALYTVSSLIRNNLAG-------- 245 (397)
Q Consensus 185 ir~~Aa~vLg~~aq---NNp~~Q~~vl~~g~lp~Ll~LL~s~---~-----~~v~~kAl~ALS~LiR~~~~~-------- 245 (397)
.-..|..|||.++. +|-+.-..++. ..-+.+..+++. + ...-...+|.++-++|++.-.
T Consensus 1137 ~V~~~vsCl~sl~~k~~~~~~~v~~cf~--~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~g~~ 1214 (1692)
T KOG1020|consen 1137 TVVEAVSCLGSLATKRTDGAKVVKACFS--CYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSNDGKT 1214 (1692)
T ss_pred HHHHHHHHHHHHHhhhccchHHHHHHHH--HHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCCCcc
Confidence 44577888888886 44443333332 122233333332 1 134568999999999965321
Q ss_pred ---HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCCh--HHHH
Q 015951 246 ---QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL--DLQE 320 (397)
Q Consensus 246 ---~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~--dv~E 320 (397)
...++..+-+..|.-..+.. +..+|++|+..++.+|-. ++. .+.+.-+...+-..|...+. ..+-
T Consensus 1215 ~~~~~~~~~e~v~~lL~~f~k~~--~~~lR~~al~~Lg~~ci~-----hp~---l~~~~~v~nly~~ila~~n~~~~~ki 1284 (1692)
T KOG1020|consen 1215 FLQEGETLKEKVLILLMYFSKDK--DGELRRKALINLGFICIQ-----HPS---LFTSREVLNLYDEILADDNSDIKSKI 1284 (1692)
T ss_pred chhhhhhHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHhh-----Cch---hhhhHHHHHHHHHHHhhhcccHHHHH
Confidence 11233344555555555554 467999999999999963 433 34555555556666665533 3345
Q ss_pred HHHHHHHHHhcC
Q 015951 321 KALAAIKNLLQL 332 (397)
Q Consensus 321 ~aL~aL~~L~~~ 332 (397)
.++..+.-+...
T Consensus 1285 ~~l~n~~~yL~e 1296 (1692)
T KOG1020|consen 1285 QLLQNLELYLLE 1296 (1692)
T ss_pred HHHHHHHHHHHH
Confidence 666666666653
No 298
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=41.53 E-value=42 Score=37.98 Aligned_cols=73 Identities=11% Similarity=0.111 Sum_probs=51.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL 243 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp-~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~ 243 (397)
.+.++..+++.+|.+|......+....+..+ .+=....-.+.+|.++....+.+.+||..|+.+++.+.+.+.
T Consensus 373 ~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 373 SEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred HHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 4455566777777777776666666655444 222222223688999999998889999999999999988654
No 299
>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []. This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.
Probab=40.68 E-value=49 Score=35.02 Aligned_cols=42 Identities=14% Similarity=0.276 Sum_probs=34.6
Q ss_pred CCcchhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHhcCC
Q 015951 292 KVEPPLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 292 ~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~~~~ 333 (397)
....+++.++++++.|++.|... +.+++..|...|..+...+
T Consensus 52 ~~ilewL~~q~LI~~Li~~L~p~~~~~~q~naa~~L~aII~is 94 (475)
T PF04499_consen 52 TGILEWLAEQNLIPRLIDLLSPSYSSDVQSNAADFLKAIIRIS 94 (475)
T ss_pred HHHHHHHHHhCHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence 35677888999999999999754 7889999998888886653
No 300
>KOG2676 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.64 E-value=34 Score=34.93 Aligned_cols=63 Identities=19% Similarity=0.177 Sum_probs=49.4
Q ss_pred HHHHHHhccCC-CCchhHHHhcCCHHHHHHhc--CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Q 015951 148 ALQELLILVEP-IDNANDLSKLGGLSVLVGQL--NHPDTDIRKISAWILGKASQNNPLVQKQVLEL 210 (397)
Q Consensus 148 AL~~L~~Lve~-iDnA~~~~~lGGl~~Li~lL--~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~ 210 (397)
...-+..+|.. .++-+.+..+||++.++.-. ...+|=||....-|+..+.|||.+.|+.+-+.
T Consensus 376 vir~ia~lcyk~~~~qD~vrel~GvaLIlsncnidD~nPfi~e~sI~c~r~Ll~nN~~NQ~~i~km 441 (478)
T KOG2676|consen 376 VIRFIAFLCYKFSTAQDLVRELNGVALILSNCNIDDWNPFIREISILCTRLLLQNNIENQKIIGKM 441 (478)
T ss_pred HHHHHHHHHHhCCchHHHHHhcCCeEEeeccCccCCCChHHHHHHHHHHHHHHhcchhhHHHHhcC
Confidence 34455566644 45555566789999999643 56789999999999999999999999988765
No 301
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=40.42 E-value=2.1e+02 Score=32.53 Aligned_cols=95 Identities=14% Similarity=0.052 Sum_probs=59.9
Q ss_pred CCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHH--hcCChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHH
Q 015951 157 EPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKA--SQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKAL 232 (397)
Q Consensus 157 e~iDnA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~--aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl 232 (397)
..-++-..|.+.-|.++|+.+| +. +++- .+-+..+.+++-+...+++|+.++.... +.++.+|-
T Consensus 145 ~~~~~v~~~l~hi~~stlMD~Llkl------------i~~de~~~p~~~Viq~l~d~~li~kll~ll~ps~~~~~qsna~ 212 (838)
T KOG2073|consen 145 KKDNFVDLFLKHIDISTLMDFLLKL------------ISTDEPESPRTDVIQWLNDQELIPKLLELLNPSKDPDVQSNAG 212 (838)
T ss_pred hhhHHHHHHHHHcCccHHHHHHHHh------------ccccCCCCchHHHHHHHhhHHHHHHHHHHhCCccccchhHHHH
Confidence 3445556777777888777754 32 1111 1122456777777889999999998654 56788888
Q ss_pred HHHHHHhcC-----Chh-cHHHHHhcCcHHHHHHhhc
Q 015951 233 YTVSSLIRN-----NLA-GQEMFYVEAGDLMLQDILG 263 (397)
Q Consensus 233 ~ALS~LiR~-----~~~-~~~~f~~~gGi~~L~~lL~ 263 (397)
+.|+.++|. -|. ...++.....+..|+..+-
T Consensus 213 ~~L~~iv~~s~~~~gPn~L~~qL~s~e~ieqLl~~ml 249 (838)
T KOG2073|consen 213 QTLCAIVRLSRNQPGPNPLTKQLESPETIEQLLKIML 249 (838)
T ss_pred HHHHHHHhcccccCCCCHHHHhhcCHHHHHHHHHHHc
Confidence 878777776 333 3444555566665555543
No 302
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=39.77 E-value=2.7e+02 Score=24.58 Aligned_cols=86 Identities=21% Similarity=0.140 Sum_probs=58.1
Q ss_pred HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHH-HHcC-cHHHHHH-hhcCCC--HHHHHHHHHHHHHH
Q 015951 164 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV-LELG-ALSKLMK-MVKSSF--VEEAVKALYTVSSL 238 (397)
Q Consensus 164 ~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~v-l~~g-~lp~Ll~-LL~s~~--~~v~~kAl~ALS~L 238 (397)
.+++....+.++..+.++++.+-..+++++.++..+. +..+ .+.+ .++.++. ++.+++ ...|.-++.++..+
T Consensus 68 ~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~---~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~~l 144 (168)
T PF12783_consen 68 NLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRF---RSHLKLELEVFLSHIILRILESDNSSLWQKELALEILREL 144 (168)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHHH
Confidence 4555577888888887777999999999999999542 1111 1222 3566665 777655 35677899999999
Q ss_pred hcCChhcHHHHHhc
Q 015951 239 IRNNLAGQEMFYVE 252 (397)
Q Consensus 239 iR~~~~~~~~f~~~ 252 (397)
+++..-..+.|.+.
T Consensus 145 ~~~p~~l~~lf~NY 158 (168)
T PF12783_consen 145 CKDPQFLVDLFVNY 158 (168)
T ss_pred HhChhHHHHHHHHc
Confidence 98655445555443
No 303
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=37.58 E-value=2.6e+02 Score=34.67 Aligned_cols=163 Identities=17% Similarity=0.142 Sum_probs=89.1
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-------HHHHHHHc--------------------------------
Q 015951 170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPL-------VQKQVLEL-------------------------------- 210 (397)
Q Consensus 170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~-------~Q~~vl~~-------------------------------- 210 (397)
.+..++..|..++|.+|..++..++.++|--+. +|..|-+.
T Consensus 877 ~~~l~~~sl~~~~p~~rc~~~ea~arLaq~v~~~~f~a~~aq~~fdklas~~d~i~R~ghslalg~lhkyvgs~~s~qhl 956 (2067)
T KOG1822|consen 877 ALTLIVNSLINPNPKLRCAAAEALARLAQVVGSAPFVASLAQNSFDKLASARDPITRTGHSLALGCLHKYVGSIGSGQHL 956 (2067)
T ss_pred HHHHHhhhhccCChHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhccCCCCchhc
Confidence 455666778889999999999999999875221 11111110
Q ss_pred -CcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH------HH
Q 015951 211 -GALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG------DL 282 (397)
Q Consensus 211 -g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~------~L 282 (397)
.++..|+.+..++. +.|+.-+++|++-++-.+.+....++...-.-++.-++..+.....+..+--..+. .+
T Consensus 957 ~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~al 1036 (2067)
T KOG1822|consen 957 NTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDAL 1036 (2067)
T ss_pred ccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHH
Confidence 23455666666554 47889999999988877777665555444333444444444323333333333333 33
Q ss_pred hhchhc----cCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951 283 AKCQLE----NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 283 ~~~~l~----~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 333 (397)
.+.-.. +..++....+...- .-...-++.++|+.++-.+..++.++.--.
T Consensus 1037 ittlgpeL~~N~~~d~t~~~rts~-la~~allls~~d~lnqa~ai~clqqlhlFa 1090 (2067)
T KOG1822|consen 1037 ITTLGPELGPNGDKDSTSTLRTSC-LAACALLLSHSDPLNQAAAIKCLQQLHLFA 1090 (2067)
T ss_pred HHhcccccCCCCcccchhHHHHHH-HHHHHHhcCCCccchHHHHHHHHHHHHhhc
Confidence 322100 00011111221111 112222456668888888888888876553
No 304
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=37.40 E-value=3.9e+02 Score=25.86 Aligned_cols=101 Identities=11% Similarity=0.073 Sum_probs=61.2
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHH
Q 015951 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 258 (397)
Q Consensus 179 ~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L 258 (397)
..++...-.+|+.+|+.. .+.-++|+|+++++.++..+-. -++-.+...-+..-+-+-.|-++.|
T Consensus 52 ~~~~~~~~~~a~~LLaq~-----------re~~A~~~li~l~~~~~~~~~~----l~GD~~tE~l~~ilasv~~G~~~~L 116 (249)
T PF06685_consen 52 DDEEYNLHFYALYLLAQF-----------REERALPPLIRLFSQDDDFLED----LFGDFITEDLPRILASVGDGDIEPL 116 (249)
T ss_pred cCcchHHHHHHHHHHHHH-----------hhhhhHHHHHHHHcCCcchHHH----HHcchhHhHHHHHHHHHhCCCHHHH
Confidence 333444556777777755 3346899999999876542110 0010000000111111224668888
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015951 259 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 299 (397)
Q Consensus 259 ~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~ 299 (397)
..++.+++.+..+|..|..++..++.. ++..++.++
T Consensus 117 ~~li~~~~~~~yvR~aa~~aL~~l~~~-----~~~~Re~vi 152 (249)
T PF06685_consen 117 KELIEDPDADEYVRMAAISALAFLVHE-----GPISREEVI 152 (249)
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHHc-----CCCCHHHHH
Confidence 888888877888999999999999863 566666654
No 305
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=37.39 E-value=3e+02 Score=32.45 Aligned_cols=114 Identities=14% Similarity=0.084 Sum_probs=72.2
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc---HHHHHhcC--cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchh
Q 015951 213 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---QEMFYVEA--GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 287 (397)
Q Consensus 213 lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~---~~~f~~~g--Gi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l 287 (397)
+..|+.++++++-..|-..+.++++++-+.-.. .....+.. -+..|..-+.+- ...+|.|+......|+...
T Consensus 314 l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~erl~Dv--sa~vRskVLqv~~~l~~~~- 390 (1251)
T KOG0414|consen 314 LTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRERLLDV--SAYVRSKVLQVFRRLFQQH- 390 (1251)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHHHhhcc--cHHHHHHHHHHHHHHHHcc-
Confidence 556777888877777888888888876542111 11111111 344455545544 5679999999999999741
Q ss_pred ccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChH
Q 015951 288 ENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT 335 (397)
Q Consensus 288 ~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~ 335 (397)
+-+ .. ..+.++..++.-|.....-|+..|+..+..+....+-
T Consensus 391 --s~p---~~-~~~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~Pf 432 (1251)
T KOG0414|consen 391 --SIP---LG-SRTEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHPF 432 (1251)
T ss_pred --CCC---cc-HHHHHHHHHhcccccccHHHHHHHHHHHHHHHhcCCc
Confidence 111 00 1123444555567777889999999999998887663
No 306
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=36.60 E-value=2e+02 Score=23.80 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=46.9
Q ss_pred HHHHHHHhhC--CCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCh
Q 015951 128 IQIAIDDLNN--STLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQNNP 201 (397)
Q Consensus 128 mk~~i~~L~~--~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s--~~~~ir~~Aa~vLg~~aqNNp 201 (397)
|...-+.+.+ +..+..+|..++..+.++++-.. ..+ ....|.+..+|.+ ..+++|..|+.|-....++=+
T Consensus 13 l~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~--~~i--~~~~pQI~a~L~sal~~~~l~~~al~~W~~fi~~L~ 86 (107)
T PF08064_consen 13 LTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGG--SHI--SSARPQIMACLQSALEIPELREEALSCWNCFIKTLD 86 (107)
T ss_pred HHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhH--HHH--HHHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHHCC
Confidence 3333344555 44577899999999998887211 111 1356777777765 567899999888888887633
No 307
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=36.55 E-value=2.3e+02 Score=25.85 Aligned_cols=76 Identities=25% Similarity=0.296 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc
Q 015951 142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 221 (397)
Q Consensus 142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~ 221 (397)
+|-|..|++.+.-+++.-...-++... +..++.-|.. +.+||..+..+|..+++.+|..-..-++ ..+++|-..|+
T Consensus 41 LelRK~ayE~lytlLd~~~~~~~~~~~--~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld-~l~~~l~~~L~ 116 (169)
T PF08623_consen 41 LELRKAAYECLYTLLDTCLSRIDISEF--LDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLD-SLVEPLRKTLS 116 (169)
T ss_dssp GHHHHHHHHHHHHHHHSTCSSS-HHHH--HHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHH--HHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHhh
Confidence 467777777777766543333345544 6777777876 9999999999999999999865544443 46777777764
No 308
>PF01365 RYDR_ITPR: RIH domain; InterPro: IPR000699 Ryanodine and Inositol 1,4,5-trisphosphate (IP3) receptors are intracellular Ca2+-release channels. They become activated upon binding of their respective ligands, Ca2+ and IP3, opening an intrgral Ca2+ channel. Ryanodine receptor activation is a key component of muscular contraction, their activation allowing release of Ca2+ from the sarcoplasmic reticulum. Mutations in the ryanodine receptor lead to malignant hyperthermia susceptibility the and central core disease of muscle.; GO: 0005262 calcium channel activity, 0070588 calcium ion transmembrane transport, 0016020 membrane; PDB: 1N4K_A 2XOA_A 3UJ0_B 3UJ4_A 3T8S_A.
Probab=36.54 E-value=1.4e+02 Score=27.34 Aligned_cols=121 Identities=14% Similarity=0.149 Sum_probs=49.7
Q ss_pred ChHHHHHHHHcCcHHHHHHhhcCCC------------------HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHh
Q 015951 200 NPLVQKQVLELGALSKLMKMVKSSF------------------VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 261 (397)
Q Consensus 200 Np~~Q~~vl~~g~lp~Ll~LL~s~~------------------~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~l 261 (397)
+..-|..+.+.|++..++.++...- ..+-..+..-|...+++|+.++..+.++-.+- +..+
T Consensus 32 ~~~rQ~llrnl~i~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~lL~~f~~~n~~NQ~~l~~~~~~l-~~~~ 110 (207)
T PF01365_consen 32 NRERQKLLRNLGIHELVLDLLKNPFDQFQGDFKDLGDQKDSSFKELFRLCYRLLRQFCRGNRENQKYLFKHLDFL-ISIF 110 (207)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHCTS---------STGGHCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH------H
T ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhcccchhhhhcchhccHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHhHH-HHHH
Confidence 3467888889999999998886421 13345677788889999999999988763321 2222
Q ss_pred hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 262 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 262 L~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
+... .. .-.-+.-++..+.. .++.....+.+.- ++.+++++..-. -+..-+..|..+...
T Consensus 111 ~~~~-~~--~~~~~~d~l~~i~~-----dN~~L~~~i~e~~-I~~~i~ll~~~g--r~~~~L~~L~~lc~~ 170 (207)
T PF01365_consen 111 MQLQ-IG--YGLGALDVLTEIFR-----DNPELCESISEEH-IEKFIELLRKHG--RQPRYLDFLSSLCVC 170 (207)
T ss_dssp HCCC-H---TTHHHHHHHHHHHT-----T------------------------------------------
T ss_pred HHhh-cc--CCchHHHHHHHHHH-----CcHHHHHHhhHHH-HHHHHHHHHHcC--CChHHHHHHhhhccc
Confidence 2221 01 11245666777765 3566666665544 888888887632 334456566666554
No 309
>TIGR00117 acnB aconitate hydratase 2. Aconitate hydratase (aconitase) is an enzyme of the TCA cycle. This model describes aconitase 2, AcnB, which has weak similarity to aconitase 1. It is found almost exclusively in the Proteobacteria.
Probab=36.50 E-value=1.3e+02 Score=34.09 Aligned_cols=104 Identities=19% Similarity=0.159 Sum_probs=59.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015951 122 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN 200 (397)
Q Consensus 122 ~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN 200 (397)
|=+++++.++++.|.++.. .+....++-|.+-|-+ .|.|- -+|.+-+..++.-=.+...--+..|..+||++--.-
T Consensus 21 pl~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~pgvd~aa-~vka~fl~~i~~~~~~~~~i~~~~a~~~l~~m~gg~ 97 (844)
T TIGR00117 21 PLNANQMAALVELLKNPPA--GEEEFLLDLLTNRVPPGVDEAA-YVKAGFLAAIAKGEAKCPLISPEKAIELLGTMQGGY 97 (844)
T ss_pred CCCHHHHHHHHHHhcCCCC--ccHHHHHHHHHhCCCCCCChHH-HHHHHHHHHHHcCCCCCcccCHHHHHHHHhhccCCC
Confidence 3466777777788777632 2333456666665543 44432 334444444443211122223566777777775321
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015951 201 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 239 (397)
Q Consensus 201 p~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~Li 239 (397)
-++.|+.+|.+++.++...|..+|+..+
T Consensus 98 -----------~~~~l~~~~~~~~~~~a~~a~~~l~~~~ 125 (844)
T TIGR00117 98 -----------NVHPLIDALDSQDANIAPIAAKALSHTL 125 (844)
T ss_pred -----------CHHHHHHHHhCCCHHHHHHHHHHHhceE
Confidence 2778888887777777777778877644
No 310
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=35.66 E-value=2.1e+02 Score=31.87 Aligned_cols=161 Identities=14% Similarity=0.077 Sum_probs=89.7
Q ss_pred CCCCchhHHHhcCCHHHHHHhcCC-CCHHHHHHHHHHHHHHhcCC--hHHHHHHHHc-------------------CcHH
Q 015951 157 EPIDNANDLSKLGGLSVLVGQLNH-PDTDIRKISAWILGKASQNN--PLVQKQVLEL-------------------GALS 214 (397)
Q Consensus 157 e~iDnA~~~~~lGGl~~Li~lL~s-~~~~ir~~Aa~vLg~~aqNN--p~~Q~~vl~~-------------------g~lp 214 (397)
+..++...|.+.||...+..+++. ++.+++..+..++++++.-- ...+..+... .+..
T Consensus 501 ~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~ersY~~~s 580 (699)
T KOG3665|consen 501 ENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIERSYNAAS 580 (699)
T ss_pred CCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhhHHHHHHH
Confidence 567899999999999999999965 77899999999999998532 1122211111 2233
Q ss_pred HHHHhhcCCCH----HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH-HHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015951 215 KLMKMVKSSFV----EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM-LQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 289 (397)
Q Consensus 215 ~Ll~LL~s~~~----~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~-L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~ 289 (397)
.|..++.+++. ..+..+..-+...+-..+.....++...-+.. +..++..+. ....+.=|+|.+.+++.+
T Consensus 581 iLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~-~~g~~lWal~ti~~~~~~---- 655 (699)
T KOG3665|consen 581 ILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSK-SDGSQLWALWTIKNVLEQ---- 655 (699)
T ss_pred HHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccC-CCchHHHHHHHHHHHHHc----
Confidence 33333333211 11222222222222222222233332223333 445555332 234677899999999863
Q ss_pred CCCCcchhHHhCCcHHHHHHhccCC-ChHHHHHHH
Q 015951 290 MHKVEPPLFRDRFFLKSVVDLTASA-DLDLQEKAL 323 (397)
Q Consensus 290 ~~~~~~~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL 323 (397)
+++....+.+.|++..+.+.-... ..++.+.+.
T Consensus 656 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (699)
T KOG3665|consen 656 -NKEYCKLVRESNGFELIENIRVLSEVVDVKEEAV 689 (699)
T ss_pred -ChhhhhhhHhccchhhhhhcchhHHHHHHHHHHH
Confidence 556667777888887776643221 334444443
No 311
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=35.53 E-value=2.9e+02 Score=23.77 Aligned_cols=87 Identities=15% Similarity=0.105 Sum_probs=53.5
Q ss_pred HHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC--cHHHHHHhhc------
Q 015951 192 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA--GDLMLQDILG------ 263 (397)
Q Consensus 192 vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g--Gi~~L~~lL~------ 263 (397)
=|+.++.+++..... .+..|.+=|++.+.-|+.|+|--|-.++++.++........+ .|..+...=.
T Consensus 24 Eia~~t~~s~~~~~e-----i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~ 98 (122)
T cd03572 24 EIAKLTRKSVGSCQE-----LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLK 98 (122)
T ss_pred HHHHHHHcCHHHHHH-----HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCccc
Confidence 445555555443333 456688888888888999999999999987665444444333 3333333322
Q ss_pred CCCccHHHHHHHHHHHHHHh
Q 015951 264 NSSFEIRLHRKAVSLVGDLA 283 (397)
Q Consensus 264 s~~~d~klr~kA~~lL~~L~ 283 (397)
.+.....+|..|--++..|.
T Consensus 99 Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 99 GDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred CcchhHHHHHHHHHHHHHHh
Confidence 12234567777777777665
No 312
>PF08216 CTNNBL: Catenin-beta-like, Arm-motif containing nuclear; InterPro: IPR013180 This domain is found in eukaryotic proteins. A human nuclear protein with this domain (Q8WYA6 from SWISSPROT) is thought to have a role in apoptosis [].
Probab=35.27 E-value=61 Score=27.37 Aligned_cols=39 Identities=13% Similarity=0.042 Sum_probs=31.1
Q ss_pred HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccH
Q 015951 230 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 269 (397)
Q Consensus 230 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~ 269 (397)
..+..++.+. .+|.....|++.|+++.|+.+|...+.|+
T Consensus 65 ~~Ik~l~~La-~~P~LYp~lv~l~~v~sL~~LL~HeN~DI 103 (108)
T PF08216_consen 65 EEIKKLSVLA-TAPELYPELVELGAVPSLLGLLSHENTDI 103 (108)
T ss_pred HHHHHHHHcc-CChhHHHHHHHcCCHHHHHHHHCCCCcce
Confidence 4555666554 46888999999999999999999887664
No 313
>PF03130 HEAT_PBS: PBS lyase HEAT-like repeat; InterPro: IPR004155 These proteins contain a short bi-helical repeat that is related to HEAT. Cyanobacteria and red algae harvest light energy using macromolecular complexes known as phycobilisomes (PBS), peripherally attached to the photosynthetic membrane. The major components of PBS are the phycobiliproteins. These heterodimeric proteins are covalently attached to phycobilins: open-chain tetrapyrrole chromophores, which function as the photosynthetic light-harvesting pigments. Phycobiliproteins differ in sequence and in the nature and number of attached phycobilins to each of their subunits. These proteins include the lyase enzymes that specifically attach particular phycobilins to apophycobiliprotein subunits. The most comprehensively studied of these is the CpcE/Flyase P31967 from SWISSPROT, P31968 from SWISSPROT, which attaches phycocyanobilin (PCB) to the alpha subunit of apophycocyanin []. Similarly, MpeU/V attaches phycoerythrobilin to phycoerythrin II, while CpeY/Z is thought to be involved in phycoerythrobilin (PEB) attachment to phycoerythrin (PE) I (PEs I and II differ in sequence and in the number of attached molecules of PEB: PE I has five, PE II has six) []. All the reactions of the above lyases involve an apoprotein cysteine SH addition to a terminal delta 3,3'-double bond. Such a reaction is not possible in the case of phycoviolobilin (PVB), the phycobilin of alpha-phycoerythrocyanin (alpha-PEC). It is thought that in this case, PCB, not PVB, is first added to apo-alpha-PEC, and is then isomerized to PVB. The addition reaction has been shown to occur in the presence of either of the components of alpha-PEC-PVB lyase PecE or PecF (or both). The isomerisation reaction occurs only when both PecE and PecF components are present, i.e. the PecE/F phycobiliprotein lyase is also a phycobilin isomerase []. Another member of this family is the NblB protein, whose similarity to the phycobiliprotein lyases was previously noted []. This constitutively expressed protein is not known to have any lyase activity. It is thought to be involved in the coordination of PBS degradation with environmental nutrient limitation. It has been suggested that the similarity of NblB to the phycobiliprotein lyases is due to the ability to bind tetrapyrrole phycobilins via the common repeated motif [].; PDB: 1TE4_A.
Probab=34.99 E-value=17 Score=22.45 Aligned_cols=26 Identities=27% Similarity=0.580 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc
Q 015951 185 IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 221 (397)
Q Consensus 185 ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~ 221 (397)
||..|++.||.+.. | -++|.|++.|+
T Consensus 1 VR~~Aa~aLg~igd--~---------~ai~~L~~~L~ 26 (27)
T PF03130_consen 1 VRRAAARALGQIGD--P---------RAIPALIEALE 26 (27)
T ss_dssp HHHHHHHHHGGG-S--H---------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCC--H---------HHHHHHHHHhc
Confidence 68899999998853 3 35677766653
No 314
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=34.32 E-value=2.1e+02 Score=27.72 Aligned_cols=72 Identities=15% Similarity=0.181 Sum_probs=50.1
Q ss_pred cCCHHHHHHhcCCCCHH--------HHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCH--HHHHHHHHHHHH
Q 015951 168 LGGLSVLVGQLNHPDTD--------IRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV--EEAVKALYTVSS 237 (397)
Q Consensus 168 lGGl~~Li~lL~s~~~~--------ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~--~v~~kAl~ALS~ 237 (397)
--.+++++++++.++.. +=..-..++.++++ |-++.|-+++.++.. =+|..|+.||..
T Consensus 72 ~~A~~~li~l~~~~~~~~~~l~GD~~tE~l~~ilasv~~------------G~~~~L~~li~~~~~~~yvR~aa~~aL~~ 139 (249)
T PF06685_consen 72 ERALPPLIRLFSQDDDFLEDLFGDFITEDLPRILASVGD------------GDIEPLKELIEDPDADEYVRMAAISALAF 139 (249)
T ss_pred hhhHHHHHHHHcCCcchHHHHHcchhHhHHHHHHHHHhC------------CCHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 35889999999765532 22223334444443 557777788887764 368999999999
Q ss_pred HhcCChhcHHHHHh
Q 015951 238 LIRNNLAGQEMFYV 251 (397)
Q Consensus 238 LiR~~~~~~~~f~~ 251 (397)
++..++..+..+++
T Consensus 140 l~~~~~~~Re~vi~ 153 (249)
T PF06685_consen 140 LVHEGPISREEVIQ 153 (249)
T ss_pred HHHcCCCCHHHHHH
Confidence 99999887877653
No 315
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.48 E-value=4.9e+02 Score=29.37 Aligned_cols=164 Identities=12% Similarity=0.171 Sum_probs=93.1
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhc-CCh----HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015951 176 GQLNHPDTDIRKISAWILGKASQ-NNP----LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 250 (397)
Q Consensus 176 ~lL~s~~~~ir~~Aa~vLg~~aq-NNp----~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~ 250 (397)
.-|+.+|.+||.+|+.++-++-- -.| +-.+.+++ +-...|.+||+++-+.+|.-|+.-++-++..+= .++
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~-kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fW----e~i 255 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQ-KQFEELYSLLEDPYPMVRSTAILGVCKITSKFW----EMI 255 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHH----HHc
Confidence 56777999999999999887752 122 22333333 245678899999989999988888877654321 111
Q ss_pred h-cCcHHHHHHhh---cCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHH
Q 015951 251 V-EAGDLMLQDIL---GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAI 326 (397)
Q Consensus 251 ~-~gGi~~L~~lL---~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL 326 (397)
- .--..+|..+. ..+ +...+|.-+..-|..++. +|..-. +.+.+ ++++-..|......|+-.+...|
T Consensus 256 P~~i~~~ll~kI~d~~a~d-t~s~VR~svf~gl~~~l~------np~sh~-~le~~-Lpal~~~l~D~se~VRvA~vd~l 326 (1005)
T KOG1949|consen 256 PPTILIDLLKKITDELAFD-TSSDVRCSVFKGLPMILD------NPLSHP-LLEQL-LPALRYSLHDNSEKVRVAFVDML 326 (1005)
T ss_pred CHHHHHHHHHHHHHHhhhc-cchheehhHhcCcHHHHc------Cccchh-HHHHH-HHhcchhhhccchhHHHHHHHHH
Confidence 1 11122233332 212 123466666777777764 332222 22222 23444555555667777766666
Q ss_pred HHHhcCChHHHHHHHhcCChHHHHHHHHHH
Q 015951 327 KNLLQLRTTEALVLKDFCGLDTALERLRQQ 356 (397)
Q Consensus 327 ~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~ 356 (397)
..+-... ..+.+. -|.++++|.+|-..
T Consensus 327 l~ik~vr--a~~f~~-I~~~d~~l~~L~~d 353 (1005)
T KOG1949|consen 327 LKIKAVR--AAKFWK-ICPMDHILVRLETD 353 (1005)
T ss_pred HHHHhhh--hhhhhc-cccHHHHHHHHhcc
Confidence 5555432 333443 67778887776443
No 316
>KOG2150 consensus CCR4-NOT transcriptional regulation complex, NOT5 subunit [Transcription]
Probab=33.24 E-value=63 Score=34.78 Aligned_cols=70 Identities=23% Similarity=0.304 Sum_probs=50.1
Q ss_pred ccccccccCCCCHHHHHHh--HHHHHHHHHhcCC-----------------CCHHHHHHHHHHHhhCCCCCHHHHHHHHH
Q 015951 90 LKETAQDVQRLSPSELKKR--QMEIKELMEKLKT-----------------PSDAQLIQIAIDDLNNSTLSLEDSQRALQ 150 (397)
Q Consensus 90 ~~~~~~~~~~~s~e~l~~r--~~~L~ea~~~~~~-----------------~~d~~lmk~~i~~L~~~~~s~e~k~~AL~ 150 (397)
+|++-.....+||.+.++| ++||...++.+.. +-+...|.-+++.|.|.+.+++.....=+
T Consensus 103 SkegL~~~~klDPkEkek~d~~~wi~~~ideLe~q~d~~ea~~~e~~~erh~~H~~~lEliLr~L~N~E~~pe~v~~vqD 182 (575)
T KOG2150|consen 103 SKEGLSAAEKLDPKEKEKRDTMDWISNQIDELERQVDSFEAEELERFIERHRWHQQKLELILRLLDNDELDPEAVNKVQD 182 (575)
T ss_pred chhhccccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCHHHHhhhhH
Confidence 3445455567899887655 8898888777641 11223355588999999999988888889
Q ss_pred HHHhccCCC
Q 015951 151 ELLILVEPI 159 (397)
Q Consensus 151 ~L~~Lve~i 159 (397)
++.++|++-
T Consensus 183 di~yyVe~n 191 (575)
T KOG2150|consen 183 DITYYVESN 191 (575)
T ss_pred HHHHHHHhc
Confidence 999999753
No 317
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=32.45 E-value=1.8e+02 Score=33.73 Aligned_cols=107 Identities=12% Similarity=0.107 Sum_probs=77.2
Q ss_pred cHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015951 212 ALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 290 (397)
Q Consensus 212 ~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~ 290 (397)
++..++.-++. +...++..|+.-+-+...+.... ..| ..|+.+|..+..++ -+.++.+++..++-+.. .
T Consensus 577 V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~-~~f--e~~L~iLq~lCrd~--~vsvrk~~~~Sltel~~-----~ 646 (1529)
T KOG0413|consen 577 VVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEA-SKF--EVVLSILQMLCRDR--MVSVRKTGADSLTELML-----R 646 (1529)
T ss_pred HHHHHHHHhccCCCcccchhhHHHHHHHHhccchh-hcc--hhHHHHHHHHhcCc--chHHHHHHHHHHHHHHh-----h
Confidence 56666666773 44578888888887777665432 222 34588999988887 44589999999998875 2
Q ss_pred CCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951 291 HKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 330 (397)
Q Consensus 291 ~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 330 (397)
+|... -++..|+..|+.+++..+.+++|+|...|-.++
T Consensus 647 ~pr~~--~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 647 DPRLF--SLSSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred Cchhh--hhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 33332 245688999999999999999999998766655
No 318
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=32.06 E-value=4.9e+02 Score=28.87 Aligned_cols=58 Identities=14% Similarity=-0.003 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015951 225 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 283 (397)
Q Consensus 225 ~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~ 283 (397)
...|..++.-||.++|..|+....+.+..-+.-|..+|.-+. +.-+-.-|+.+|.-|.
T Consensus 82 ~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~-~~~~~~~al~~LimlL 139 (668)
T PF04388_consen 82 PSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDT-SITVVSSALLVLIMLL 139 (668)
T ss_pred chhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcc-cHHHHHHHHHHHHHHh
Confidence 356889999999999999999999999999999999998653 4445556666665554
No 319
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=31.46 E-value=5.6e+02 Score=28.41 Aligned_cols=71 Identities=14% Similarity=0.137 Sum_probs=57.8
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHH
Q 015951 176 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEM 248 (397)
Q Consensus 176 ~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~ 248 (397)
.++. .+.-|..|..+||.+++..|..--.+.+...++.|+++|..+. ..+-..|+.+|.-++=+-|.....
T Consensus 77 ~~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~ 148 (668)
T PF04388_consen 77 DYFV--KPSYRLQALTLLGHFVRSQPPWLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGP 148 (668)
T ss_pred HHHc--CchhHHHHHHHHHHHHhcCCchHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhH
Confidence 3444 4578999999999999999988888999999999999998765 456778999999888766654433
No 320
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=31.16 E-value=4.8e+02 Score=25.22 Aligned_cols=116 Identities=16% Similarity=0.140 Sum_probs=70.1
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCC--HHHHHHhcCC-CCHHHHHHHHHHHHHHhcCCh--
Q 015951 127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGG--LSVLVGQLNH-PDTDIRKISAWILGKASQNNP-- 201 (397)
Q Consensus 127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGG--l~~Li~lL~s-~~~~ir~~Aa~vLg~~aqNNp-- 201 (397)
+++..++....+......|...++-|..++++. ...+..+|. +..+++.... .+|.--..+..++..+.++-+
T Consensus 81 i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~--~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~ 158 (262)
T PF14500_consen 81 ILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENH--REALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDIS 158 (262)
T ss_pred HHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHh--HHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc
Confidence 333344433444445567788888888887663 233455543 3445555533 567777777777777765522
Q ss_pred -------------------------------HHHHHHHH---------cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015951 202 -------------------------------LVQKQVLE---------LGALSKLMKMVKSSFVEEAVKALYTVSSLIRN 241 (397)
Q Consensus 202 -------------------------------~~Q~~vl~---------~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~ 241 (397)
..+..+.+ .-++|.|+.-|+++...++.-++.+|...+..
T Consensus 159 ~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 159 EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 11111111 14788888888888888888888888877766
Q ss_pred Chh
Q 015951 242 NLA 244 (397)
Q Consensus 242 ~~~ 244 (397)
++.
T Consensus 239 y~~ 241 (262)
T PF14500_consen 239 YGA 241 (262)
T ss_pred CCH
Confidence 643
No 321
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=30.97 E-value=3.1e+02 Score=27.61 Aligned_cols=143 Identities=13% Similarity=0.056 Sum_probs=0.0
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCC-------CHHHHHHHHHHHHHHhcC
Q 015951 127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP-------DTDIRKISAWILGKASQN 199 (397)
Q Consensus 127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~-------~~~ir~~Aa~vLg~~aqN 199 (397)
..++..+.+.+. +...+..||+.| +.|=.-...+|.++.++... +-.+-.....++..+.+
T Consensus 179 yf~~It~a~~~~--~~~~r~~aL~sL---------~tD~gl~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~- 246 (343)
T cd08050 179 YFEEITEALVGS--NEEKRREALQSL---------RTDPGLQQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLD- 246 (343)
T ss_pred HHHHHHHHHhCC--CHHHHHHHHHHh---------ccCCCchhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhc-
Q ss_pred ChHHHHHHHHcCcHHHHHHhh----------cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccH
Q 015951 200 NPLVQKQVLELGALSKLMKMV----------KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEI 269 (397)
Q Consensus 200 Np~~Q~~vl~~g~lp~Ll~LL----------~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~ 269 (397)
||...-...=+-.+|.++.++ ..+.-.+|..|...++.+++.+...... +...-...|...|.++....
T Consensus 247 N~~l~le~Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~-l~~ri~~tl~k~l~d~~~~~ 325 (343)
T cd08050 247 NPNLHLEPYLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNT-LQPRITRTLLKALLDPKKPL 325 (343)
T ss_pred CCCCchHHhHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHcCCCCCc
Q ss_pred HHHHHHHHHHHHH
Q 015951 270 RLHRKAVSLVGDL 282 (397)
Q Consensus 270 klr~kA~~lL~~L 282 (397)
...--|+.-|..|
T Consensus 326 ~~~YGAi~GL~~l 338 (343)
T cd08050 326 TTHYGAIVGLSAL 338 (343)
T ss_pred chhhHHHHHHHHh
No 322
>PF13925 Katanin_con80: con80 domain of Katanin
Probab=29.48 E-value=3.2e+02 Score=24.36 Aligned_cols=84 Identities=8% Similarity=0.016 Sum_probs=50.4
Q ss_pred HhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015951 166 SKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 244 (397)
Q Consensus 166 ~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~ 244 (397)
-.-|.+...+..+ ..+++.|-.-...++...-+.+--.=+... ..+|.+..+|.|..+.-...|+..|-.+++.+.+
T Consensus 25 W~~~~~k~ai~~~~~~~D~svlvD~L~vl~~~~~~~~~tLd~c~--~lLP~i~~LL~Sk~E~~i~~aL~~L~~i~~~f~~ 102 (164)
T PF13925_consen 25 WRRNDIKGAIEYAVRMNDPSVLVDVLSVLNQSLKPEKWTLDLCV--DLLPLIEELLQSKYESYISVALEMLRSILKKFGP 102 (164)
T ss_pred HhcCcHHHHHHHHHhcCCchHHHHHHHHHHHhcCcCcccHHHHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444433 334555554444444433222221111111 3689999999998888888999999999998877
Q ss_pred cHHHHHh
Q 015951 245 GQEMFYV 251 (397)
Q Consensus 245 ~~~~f~~ 251 (397)
-...+..
T Consensus 103 ~I~~~~~ 109 (164)
T PF13925_consen 103 VIRSNLS 109 (164)
T ss_pred HHHHHHH
Confidence 6666654
No 323
>PRK14707 hypothetical protein; Provisional
Probab=29.01 E-value=1.4e+03 Score=29.56 Aligned_cols=177 Identities=8% Similarity=0.042 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc
Q 015951 143 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK 221 (397)
Q Consensus 143 e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~ 221 (397)
..+..|..--..+..+.+..+.|. ..++.-.++-| +=|+...-..|+.+|+..-...|..+..+--. .+...+.=|+
T Consensus 810 ~Cr~AA~~LA~rLa~dp~Lr~af~-AQ~VANaLNALSKWPd~~~Cr~AA~aLA~RLa~e~~LR~aL~~Q-evantLNALS 887 (2710)
T PRK14707 810 ACAAAASALAARVADDPRLREAFD-VQHVATVLNAMSKWPDNAVCAAAAGAMAERLADEPELRHTLTAH-GVVIVLNALS 887 (2710)
T ss_pred HHHHHHHHHHHHHhcChhHHHhcC-HHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcChhhhhccchH-HHHHHHhhhc
Confidence 334333333333444444444433 34666667666 44788888888888888887888776655322 2333333333
Q ss_pred C-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015951 222 S-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 300 (397)
Q Consensus 222 s-~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 300 (397)
. +....-.+|..+|..-+.+.+.-.+.|- +-|+.-..+.|..=....-.+.-+..+...|.. ++..+..+..
T Consensus 888 KWPd~~~C~~AA~aLA~rL~~d~~Lrqal~-aQ~VAN~LNALSKWPd~~~Cr~Aa~aLA~rLa~------d~~Lr~Aln~ 960 (2710)
T PRK14707 888 KWPNVPVCAAAASALAERLADEPELRKALS-AHRVATALNALSKWPDIPVCATAASALAERLSD------DPDLREALDA 960 (2710)
T ss_pred cCCCcHHHHHHHHHHHHHHhcCHHHHhhcc-HHHHHHHHhhhccCCCchHHHHHHHHHHHHhcc------ChhhhhhccH
Confidence 2 3345567888888888887777666664 455555555555211122234444444445542 4556666655
Q ss_pred CCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015951 301 RFFLKSVVDLTASADLDLQEKALAAIKN 328 (397)
Q Consensus 301 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~ 328 (397)
+++...|-.+=+=+|.+...+|..+|..
T Consensus 961 Q~lsNtLNALSKWPd~~~c~~AA~aLA~ 988 (2710)
T PRK14707 961 SNLPQVLNALSKWPDVPAGGEVVDALAE 988 (2710)
T ss_pred HHHHHHHhhhccCCCchHHHHHHHHHHH
Confidence 5554444443333555555555555554
No 324
>KOG1791 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.95 E-value=9.4e+02 Score=29.60 Aligned_cols=220 Identities=18% Similarity=0.156 Sum_probs=110.7
Q ss_pred HHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC----hHHHHHH--------------------------------
Q 015951 164 DLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN----PLVQKQV-------------------------------- 207 (397)
Q Consensus 164 ~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN----p~~Q~~v-------------------------------- 207 (397)
-|+..|.+.++...+.+.++.+|..|+||+...-.+- ...|.++
T Consensus 1434 ~fvs~~lLa~~F~~lSS~D~~mr~la~~~lqi~~dHLe~l~ek~~a~~~ll~L~~l~qng~~e~~~Rl~si~alF~A~~~ 1513 (1758)
T KOG1791|consen 1434 IFVSRGLLALLFKGLSSDDPSMRKLAYWVLQIFLDHLENLLEKKQAQFNLLYLSCLAQNGSRESDPRLISICALFIAFFS 1513 (1758)
T ss_pred hhhhcccHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCCCcchhhHHHHHHHHHH
Confidence 7888999999999999999999999999987554221 1111111
Q ss_pred -----------------------HHcCcHHHHHHhhcCCCHH---HHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHh
Q 015951 208 -----------------------LELGALSKLMKMVKSSFVE---EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 261 (397)
Q Consensus 208 -----------------------l~~g~lp~Ll~LL~s~~~~---v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~l 261 (397)
++..++|.+-+.+.|...+ .|.=-+.-++..++..+. .+.....+++..+...
T Consensus 1514 ~ill~Ps~~ly~~In~~L~~s~~vdlq~iP~F~~ffySs~~e~~t~R~Wvl~LV~~glks~~D-~ql~~~~~~~~~~lsf 1592 (1758)
T KOG1791|consen 1514 DILLVPSEGLYFPINGLLLSSKIVDLQGIPIFHRFFYSSVFEHHTEREWVLELVSKGLKSCPD-YQLLQIRNIFETLLSF 1592 (1758)
T ss_pred HHHcCCccccchhHHHHHHhhhhcccCCCccHHHHHHhccccccchhhhhHHHHHHHhcCchh-hhHHhhcCcceEeehh
Confidence 1112233333333222211 223333444444444322 3334455666666666
Q ss_pred hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHH-HHHHHHHHhcCChHHHH
Q 015951 262 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEK-ALAAIKNLLQLRTTEAL 338 (397)
Q Consensus 262 L~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~-aL~aL~~L~~~~~~~r~ 338 (397)
+.++=.+...++ +++.-|.... .-+....+.+...|+...+..++.++ .+-..+. ....+.++-...-+.++
T Consensus 1593 ~sS~l~~~~S~~---LIL~~L~~~V--k~p~~a~~mle~~Gl~sWi~niI~s~~~k~~~~~~l~~~v~~~l~~aewd~~~ 1667 (1758)
T KOG1791|consen 1593 YSSPLASEESKR---LILATLQKGV--KFPFYAYEMLEVPGLFSWILNIIPSSFLKPVLLKALVISVLKVLWVAEWDDQR 1667 (1758)
T ss_pred hcchhHHHHHHH---HHHHHHHhcC--CCcHHHHHHHhcccHHHHHHHhccccccchHHHhhhHHHHHHHHHHhHHHhhh
Confidence 665411211111 4444443210 12334566778889999999999886 3333333 44445555543111111
Q ss_pred HHH-hcCChHHHHHHHHHHhHH----------hhh-hhhhhhhHHhHHHHHHHHHHHHHHHhh
Q 015951 339 VLK-DFCGLDTALERLRQQLQE----------VML-EEDQRDYAMDVEALRREVELIFFRKLD 389 (397)
Q Consensus 339 ~~~-~~~gL~~~L~~Lr~~~~~----------l~~-~e~~~~~~~~l~~~~~e~~~~~~~~~~ 389 (397)
.-. ..-|....++.+|-.... ..+ ..+|+--+.....+++|+-.++..+++
T Consensus 1668 l~~~~~q~~~~~~~l~~i~~~s~~~i~~~l~~~~tl~~e~~~t~~s~~rl~~~v~~~~k~~~~ 1730 (1758)
T KOG1791|consen 1668 LNLGSRQGIVSFLELLRINIKSRLPIDDILNLIGTLAGEQRKTLNSTLRLAQEVNGIWKDLLG 1730 (1758)
T ss_pred chhhhHHHHHHHHHHhcCCcceeeehhhhhhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 000111122222211111 111 234555666677788888888887775
No 325
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=28.64 E-value=1.6e+02 Score=23.43 Aligned_cols=48 Identities=10% Similarity=0.111 Sum_probs=36.3
Q ss_pred CcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc
Q 015951 211 GALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG 263 (397)
Q Consensus 211 g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~ 263 (397)
..+.++..++.+ .+.++|...+.+|..++..+.... ..||+.+..++.
T Consensus 17 ~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i-----~SGW~~if~il~ 65 (86)
T PF09324_consen 17 DFLKPFEYIMSNNPSIDVRELILECILQILQSRGENI-----KSGWKVIFSILR 65 (86)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHH-----HhccHHHHHHHH
Confidence 346677777654 457899999999999997665432 368999999886
No 326
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=28.54 E-value=1.8e+02 Score=24.06 Aligned_cols=63 Identities=19% Similarity=0.336 Sum_probs=43.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015951 172 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 244 (397)
Q Consensus 172 ~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~ 244 (397)
...++-|+.+...|+..+.|++.+.-.. + ..+..+.+-+...+.+-+...+|-+..++++...
T Consensus 3 ~~~L~~L~~s~~~I~~lt~~~~~~~~~a-~---------~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~ 65 (121)
T smart00582 3 EQKLESLNNSQESIQTLTKWAIEHASHA-K---------EIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKR 65 (121)
T ss_pred HHHHHhccccHHHHHHHHHHHHHHHHHH-H---------HHHHHHHHHHHhCCccceehhHHhHHHHHHHHhh
Confidence 3455566777889999999999876432 1 1344455555555556677899999999987643
No 327
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=28.08 E-value=1.2e+02 Score=34.50 Aligned_cols=55 Identities=20% Similarity=0.277 Sum_probs=33.6
Q ss_pred CCHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHhhCC-------------CCCHHHHHHHHHHHHhccCCCCch
Q 015951 100 LSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNS-------------TLSLEDSQRALQELLILVEPIDNA 162 (397)
Q Consensus 100 ~s~e~l~~r~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~-------------~~s~e~k~~AL~~L~~Lve~iDnA 162 (397)
-|++||.+-+++|++||+++ |+++-+...+. ..+.++...-++.++++.++=+.+
T Consensus 520 AsdeEI~~Lm~eLR~Am~~y--------m~~LAeq~~~~~~~~~~~~~~~~~~l~~~dLq~Mmd~ieela~~G~~~ 587 (851)
T TIGR02302 520 ASDEEIKQLTDKLRAAMQTY--------MRQLAQQLRNNPQQLARPLDPNTKVLRQQDLQNMMDQIENLARSGDRD 587 (851)
T ss_pred CCHHHHHHHHHHHHHHHHHH--------HHHHHHHhhhCcccccccCCccccccCHHHHHHHHHHHHHHHHcCCHH
Confidence 47889999999999999854 44333333211 134455556666666666654433
No 328
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.95 E-value=2.7e+02 Score=32.16 Aligned_cols=92 Identities=18% Similarity=0.138 Sum_probs=65.3
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC-CchhHHHh--cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhc-CChHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSK--LGGLSVLVGQLNHPDTDIRKISAWILGKASQ-NNPLV 203 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnA~~~~~--lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aq-NNp~~ 203 (397)
|-+++..|... +..-++.||+.|...+-=. +.-|.|.. .-.||.++.++...+|-+-..|+.||-+++. ....+
T Consensus 805 l~r~~~~LS~e--~l~irvkaLdvl~~gl~~La~~~n~LlPlvhq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv 882 (1014)
T KOG4524|consen 805 LGRGIHLLSHE--SLRIRVKALDVLSLGLPLLATYHNLLLPLVHQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFV 882 (1014)
T ss_pred HHHHHHHhcch--hHHHHHHHHHHHHhccHHHhccchhHhHHHHhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHH
Confidence 33455556554 3456788999998754321 22233433 3689999999999999999999999999885 45667
Q ss_pred HHHHHHcCcHHHHHHhhcC
Q 015951 204 QKQVLELGALSKLMKMVKS 222 (397)
Q Consensus 204 Q~~vl~~g~lp~Ll~LL~s 222 (397)
+..+++ .++|.|-+++.+
T Consensus 883 ~sR~l~-dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 883 ASRFLE-DVLPWLKHLCQD 900 (1014)
T ss_pred HHHHHH-HHHHHHHHHHHH
Confidence 777776 488888877654
No 329
>PF10257 RAI16-like: Retinoic acid induced 16-like protein; InterPro: IPR019384 This entry represents a conserved sequence region found in a family of proteins described as retinoic acid-induced protein 16-like proteins. These proteins are conserved from worms to humans, but their function is not known.
Probab=27.68 E-value=6.2e+02 Score=25.54 Aligned_cols=135 Identities=16% Similarity=0.099 Sum_probs=83.5
Q ss_pred hcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc-CcHHHHHHh-hcC---C--C---HHHHHHHHHHH
Q 015951 167 KLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQKQVLEL-GALSKLMKM-VKS---S--F---VEEAVKALYTV 235 (397)
Q Consensus 167 ~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~-g~lp~Ll~L-L~s---~--~---~~v~~kAl~AL 235 (397)
+..-++.|..+= ....+++|..+.+.+.++... .++.++.+ .+..++.++ +.. . . +..-+.-++.|
T Consensus 7 ~~~Il~~L~~la~~d~p~g~r~~~l~f~~~Ll~~---~~~plL~h~~v~~pl~~L~l~~c~~~~~~~~~E~~lV~lL~~l 83 (353)
T PF10257_consen 7 QHQILETLCTLAKADYPPGMRQEVLKFFSRLLSQ---SQQPLLPHRSVHRPLQRLLLRSCGESRSASPTEKELVELLNTL 83 (353)
T ss_pred HhChHHHHHHHHcccCChHHHHHHHHHHHHHHHh---cccccccchhhhhhHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Confidence 345567777654 456789999999999999864 33334443 455667677 432 1 1 22346789999
Q ss_pred HHHhcCChhcHHHHHhcCc--------------------------HHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015951 236 SSLIRNNLAGQEMFYVEAG--------------------------DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 289 (397)
Q Consensus 236 S~LiR~~~~~~~~f~~~gG--------------------------i~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~ 289 (397)
+.-+|.+|.-...|...+. +..|+..+.+.+ ++-.+|...+-.++.-. .
T Consensus 84 c~~i~~~P~ll~~ff~~~~~~~~~~~~~~~~~~~~~~~~~~~f~Lf~~Ll~~vh~eg---~ig~~Are~LLll~~l~--~ 158 (353)
T PF10257_consen 84 CSKIRKDPSLLNFFFESSPSQAQEEDSESSSSSFAGRTGKSEFLLFSLLLPYVHSEG---RIGDFAREGLLLLMSLA--S 158 (353)
T ss_pred HHHHHhCHHHHHHHhcCCccccccccccCcccccCCCCCCccchHHHHHHHHhCcCc---HHHHHHHHHHHHHHhCC--C
Confidence 9999999998888876543 346667777652 34445555554444310 1
Q ss_pred CCCCcchhHHh-CCcHHHHHH
Q 015951 290 MHKVEPPLFRD-RFFLKSVVD 309 (397)
Q Consensus 290 ~~~~~~~~l~~-~g~v~~Lv~ 309 (397)
.++....++.+ ..+++.+..
T Consensus 159 ~~~~~~~~i~~~S~fc~~lat 179 (353)
T PF10257_consen 159 EDPALAQYIVEHSDFCPVLAT 179 (353)
T ss_pred CCcHHHHHHHHcchhHHHHHH
Confidence 24455566666 455555544
No 330
>PF12463 DUF3689: Protein of unknown function (DUF3689) ; InterPro: IPR022162 This family of proteins is found in eukaryotes. Proteins in this family are typically between 399 and 797 amino acids in length.
Probab=26.30 E-value=6.6e+02 Score=25.06 Aligned_cols=129 Identities=13% Similarity=0.132 Sum_probs=84.4
Q ss_pred HHHHHHHcCcHHHHHHhhcCC-------C--------------H--HHHHHHHHHHHHHhcCChhc--------------
Q 015951 203 VQKQVLELGALSKLMKMVKSS-------F--------------V--EEAVKALYTVSSLIRNNLAG-------------- 245 (397)
Q Consensus 203 ~Q~~vl~~g~lp~Ll~LL~s~-------~--------------~--~v~~kAl~ALS~LiR~~~~~-------------- 245 (397)
+|..+.+.|.+|.|-++++.= + + .++..-+..+.+.+.++...
T Consensus 1 vq~~l~~~~li~~L~~~fd~l~W~~~~~~~~~~~~~~~~cdcsp~~~lKiQfLRlvh~f~D~~~~~~~~~~~~~~~~~~~ 80 (303)
T PF12463_consen 1 VQTRLAELGLIPTLNDMFDKLIWRKSSPDENVFHIHGPNCDCSPDTILKIQFLRLVHSFCDHDSNNSAIISELLIPSVES 80 (303)
T ss_pred ChHHHHHcCCHhHHHHHHHhccCCCCCCCccccccCCCCCccchhHHHHHHHHHHHHHHhccccchhHHHHHhcCccccc
Confidence 478888999999998887521 1 1 24566677777776643211
Q ss_pred -----HHHHH--hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC-CcchhHHhCCcHHHHHHhccCC---
Q 015951 246 -----QEMFY--VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK-VEPPLFRDRFFLKSVVDLTASA--- 314 (397)
Q Consensus 246 -----~~~f~--~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~-~~~~~l~~~g~v~~Lv~lL~~~--- 314 (397)
..... +.|=+..+++.+.....+.+.|---+.++-++... .++ ..+..+.+.|+++.++..+-++
T Consensus 81 ~~~~~~~~~~~~~~gLl~kIi~~l~~e~~~s~~RfwLa~cVESfLRg----~t~~~~Q~fl~~~GLLe~lv~eil~~~~~ 156 (303)
T PF12463_consen 81 ELNSNKLAECKEKKGLLSKIIHVLKKEPIDSSYRFWLARCVESFLRG----ATSYADQAFLAERGLLEHLVSEILSDGCM 156 (303)
T ss_pred cccccccccccccccHHHHHHHHHHhCCCchhHHHHHHHHHHHHHcC----CCcHHHHHHHHhcchHHHHHHHHhcCccc
Confidence 11111 12334455555554445566777777788888763 344 5677889999999999876554
Q ss_pred ChHHHHHHHHHHHHHhcCChH
Q 015951 315 DLDLQEKALAAIKNLLQLRTT 335 (397)
Q Consensus 315 d~dv~E~aL~aL~~L~~~~~~ 335 (397)
+..+....-..|+.|...+..
T Consensus 157 ~~~v~Q~~FDLLGELiK~n~~ 177 (303)
T PF12463_consen 157 SQEVLQSNFDLLGELIKFNRD 177 (303)
T ss_pred hHHHHHHHHHHHHHHHCCCHH
Confidence 446778888888888887643
No 331
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=26.07 E-value=2e+02 Score=22.78 Aligned_cols=54 Identities=24% Similarity=0.339 Sum_probs=40.6
Q ss_pred hCCcHHHHHHhc-cCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhH
Q 015951 300 DRFFLKSVVDLT-ASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQ 358 (397)
Q Consensus 300 ~~g~v~~Lv~lL-~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~ 358 (397)
+..+++.+..++ +..+.++++..+.|+.+++.. +...++ .|.+..+.-|+.-..
T Consensus 15 Q~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~---~~~~i~--SGW~~if~il~~aa~ 69 (86)
T PF09324_consen 15 QKDFLKPFEYIMSNNPSIDVRELILECILQILQS---RGENIK--SGWKVIFSILRAAAK 69 (86)
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHH---hHHHHH--hccHHHHHHHHHHHh
Confidence 345667777775 446899999999999999964 445665 788888888876644
No 332
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=25.56 E-value=3.6e+02 Score=26.21 Aligned_cols=83 Identities=17% Similarity=0.154 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcC---CCC-HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHH
Q 015951 109 QMEIKELMEKLK---TPS-DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTD 184 (397)
Q Consensus 109 ~~~L~ea~~~~~---~~~-d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ 184 (397)
.+|++.+...+. .|+ +.+.+.-+++.|.|+ ...-|...++.|..++..+|..+. +....+.+|+++|..+.
T Consensus 167 ~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~--~~w~~~~~L~iL~~ll~~~d~~~~-~~~dlispllrlL~t~~-- 241 (262)
T PF14225_consen 167 DDFLSQVVSYLREAFFPDHEFQILTFLLGLLENG--PPWLRRKTLQILKVLLPHVDMRSP-HGADLISPLLRLLQTDL-- 241 (262)
T ss_pred HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhccccCCCC-cchHHHHHHHHHhCCcc--
Confidence 455665554442 233 556666677777775 346778889999999998887766 44557888888887653
Q ss_pred HHHHHHHHHHHHh
Q 015951 185 IRKISAWILGKAS 197 (397)
Q Consensus 185 ir~~Aa~vLg~~a 197 (397)
-..|..++-.+.
T Consensus 242 -~~eAL~VLd~~v 253 (262)
T PF14225_consen 242 -WMEALEVLDEIV 253 (262)
T ss_pred -HHHHHHHHHHHH
Confidence 235555555444
No 333
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=25.24 E-value=2.9e+02 Score=28.75 Aligned_cols=93 Identities=15% Similarity=0.100 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHH
Q 015951 228 AVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV 307 (397)
Q Consensus 228 ~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~L 307 (397)
.-..+..++-.+...+.+-+ +++..|.+-|... +.-+...|++++-.++. +....++..+.+..|...|
T Consensus 25 nW~~IlDvCD~v~~~~~~~k-----d~lk~i~KRln~~--dphV~L~AlTLlda~~~----NCg~~~r~EVsSr~F~~el 93 (462)
T KOG2199|consen 25 NWSLILDVCDKVGSDPDGGK-----DCLKAIMKRLNHK--DPHVVLQALTLLDACVA----NCGKRFRLEVSSRDFTTEL 93 (462)
T ss_pred cHHHHHHHHHhhcCCCcccH-----HHHHHHHHHhcCC--CcchHHHHHHHHHHHHH----hcchHHHHHHhhhhHHHHH
Confidence 44566777777776654322 4566666667765 45578899999999986 4667788888889999999
Q ss_pred HHhcc-CCChHHHHHHHHHHHHHhc
Q 015951 308 VDLTA-SADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 308 v~lL~-~~d~dv~E~aL~aL~~L~~ 331 (397)
-.++. +.++.|.++....+...+.
T Consensus 94 ~al~~~~~h~kV~~k~~~lv~eWse 118 (462)
T KOG2199|consen 94 RALIESKAHPKVCEKMRDLVKEWSE 118 (462)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHH
Confidence 99998 6688999988877777764
No 334
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=25.02 E-value=5.7e+02 Score=31.93 Aligned_cols=129 Identities=12% Similarity=0.095 Sum_probs=79.1
Q ss_pred HHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhc----CCCCHHHHHHHHHHHHHHhcC--------ChHHHHHHHHcC
Q 015951 145 SQRALQELLILVE-PIDNANDLSKLGGLSVLVGQL----NHPDTDIRKISAWILGKASQN--------NPLVQKQVLELG 211 (397)
Q Consensus 145 k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL----~s~~~~ir~~Aa~vLg~~aqN--------Np~~Q~~vl~~g 211 (397)
+.-.|+.|-++.. +++-- .++=...|..+-+.+ .+++..++..|...|..++.. |-..|+.|
T Consensus 1109 r~FsLqKLveIa~~Nm~Ri-rl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkef---- 1183 (1780)
T PLN03076 1109 RVFSLTKIVEIAHYNMNRI-RLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEF---- 1183 (1780)
T ss_pred chhHHHHHHHHHHhcccch-heehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHH----
Confidence 5556666665543 33321 222225565565543 245778999999988887752 22445555
Q ss_pred cHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC--CCccHHHHHHHHHHHHHHhh
Q 015951 212 ALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN--SSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 212 ~lp~Ll~LL~-s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s--~~~d~klr~kA~~lL~~L~~ 284 (397)
+.++..++. +.+.+++...+.++..|+..+..+.. .||..+..++.. ...+..+-..|.-.+..++.
T Consensus 1184 -LkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIk-----SGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~ 1253 (1780)
T PLN03076 1184 -MKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVK-----SGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIR 1253 (1780)
T ss_pred -HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhh-----cCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 455555554 44568999999999999875543222 399999999873 22244566666666666654
No 335
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=24.81 E-value=5.6e+02 Score=23.67 Aligned_cols=77 Identities=12% Similarity=0.065 Sum_probs=54.1
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH--cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH
Q 015951 170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE--LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 247 (397)
Q Consensus 170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~--~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~ 247 (397)
-+|.+.+-|......-+..|...+..+.+. ...+.++- -..+++|-.-|++.++++...++.+|..|+..++..=.
T Consensus 39 ~Lpif~dGL~Et~~Py~flA~~g~~dll~~--~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~ 116 (183)
T PF10274_consen 39 YLPIFFDGLRETEHPYRFLARQGIKDLLER--GGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGE 116 (183)
T ss_pred HHHHHHhhhhccCccHHHHHHHHHHHHHHh--cchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhH
Confidence 466677777777888888888888877765 12223332 23566666778888899999999999999877654333
Q ss_pred H
Q 015951 248 M 248 (397)
Q Consensus 248 ~ 248 (397)
+
T Consensus 117 a 117 (183)
T PF10274_consen 117 A 117 (183)
T ss_pred H
Confidence 3
No 336
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=24.64 E-value=6.9e+02 Score=24.67 Aligned_cols=191 Identities=14% Similarity=0.072 Sum_probs=91.2
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC--ChHHH
Q 015951 127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN--NPLVQ 204 (397)
Q Consensus 127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqN--Np~~Q 204 (397)
++..++.++.. +..+.....++..|...+...+ .=..-..+..+..-++...+.+|..-+.++|.+... |...
T Consensus 23 i~~~l~~~~~K-E~nE~aL~~~l~al~~~~~~~~---~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~- 97 (339)
T PF12074_consen 23 IVQGLSPLLSK-ESNEAALSALLSALFKHLFFLS---SELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDS- 97 (339)
T ss_pred HHHHHHHHHHh-hcCHHHHHHHHHHHHHHHHHhC---cCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchH-
Confidence 33444444433 3344455555666654332220 000112344555667777777999999999999871 1111
Q ss_pred HHHHHcCcHHHHHHhhcCC----CHHHH---HHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh-cCCC----ccHHHH
Q 015951 205 KQVLELGALSKLMKMVKSS----FVEEA---VKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL-GNSS----FEIRLH 272 (397)
Q Consensus 205 ~~vl~~g~lp~Ll~LL~s~----~~~v~---~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL-~s~~----~d~klr 272 (397)
..+. ...+|.|++.++.. .+... .-+.|++-.+.+........ -......+ -+++ .+.|+-
T Consensus 98 ~~~~-~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~------~~~~~~~l~~~~kps~ll~~kvy 170 (339)
T PF12074_consen 98 LKFA-EPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDS------KNISFWSLALDPKPSFLLSEKVY 170 (339)
T ss_pred HHHH-HHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhh------hhhhhhhhccCCCcchhcCHHHH
Confidence 2222 24789999888532 12212 12333333311111111110 00000000 0110 012333
Q ss_pred HH---------HHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHhcCCh
Q 015951 273 RK---------AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 273 ~k---------A~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~~~ 334 (397)
.| .+.++..+..+ ..+...... ...+-+.++.++.+. ...+|..|+.+|..+....+
T Consensus 171 skl~~~~d~~w~~~al~~~~~~----~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~ 238 (339)
T PF12074_consen 171 SKLASEEDLCWLLRALEALLSD----HPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNP 238 (339)
T ss_pred hccCCHhHHHHHHHHHHHHHhc----chhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCh
Confidence 33 33333333321 111111111 234667788888877 88999999999998887654
No 337
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.34 E-value=3.9e+02 Score=32.14 Aligned_cols=76 Identities=20% Similarity=0.234 Sum_probs=56.8
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLV-GQLNHPDTDIRKISAWILGKASQNNPLVQKQ 206 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li-~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~ 206 (397)
|+..++.|... ++-.|+.||++|.+++++.|.-...--++-|+.+. ++..+.+..||...-.++..+... ++..
T Consensus 43 l~~I~kkL~Kk--D~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~---lkk~ 117 (1312)
T KOG0803|consen 43 LDIIVKKLLKR--DETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTK---LKKK 117 (1312)
T ss_pred HHHHHHHHhcc--ChHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH---HHHH
Confidence 34444444443 45679999999999999988666555577888887 577889999999999999998853 5554
Q ss_pred HH
Q 015951 207 VL 208 (397)
Q Consensus 207 vl 208 (397)
+-
T Consensus 118 ls 119 (1312)
T KOG0803|consen 118 LS 119 (1312)
T ss_pred hh
Confidence 33
No 338
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=24.14 E-value=3.3e+02 Score=30.85 Aligned_cols=93 Identities=16% Similarity=0.157 Sum_probs=62.1
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHH
Q 015951 180 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 259 (397)
Q Consensus 180 s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~ 259 (397)
.+=+.++..|..+|..+-.|-|+.-.. .+..||.-|-+....+..+|-|-|-.|.+.||.....++ .-+.
T Consensus 315 D~L~~vk~raL~ti~~lL~~kPEqE~~-----LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi-----~EIe 384 (988)
T KOG2038|consen 315 DPLEEVKKRALKTIYDLLTNKPEQENN-----LLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVI-----DEIE 384 (988)
T ss_pred ccHHHHHHHHHHHHHHHHhCCcHHHHH-----HHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehH-----HHHH
Confidence 356899999999999999998865443 456677777776667899999999999999987443332 2233
Q ss_pred HhhcCCCccHHHHHHHHHHHHHH
Q 015951 260 DILGNSSFEIRLHRKAVSLVGDL 282 (397)
Q Consensus 260 ~lL~s~~~d~klr~kA~~lL~~L 282 (397)
+++-.++.+.+.+-.|+..|+.+
T Consensus 385 r~~FRpn~~~ra~Yyav~fLnQ~ 407 (988)
T KOG2038|consen 385 RLAFRPNVSERAHYYAVIFLNQM 407 (988)
T ss_pred HHHcccCccccceeehhhhhhhh
Confidence 33333333444444444444444
No 339
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.85 E-value=4.9e+02 Score=26.28 Aligned_cols=109 Identities=17% Similarity=0.156 Sum_probs=62.3
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCC
Q 015951 212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 291 (397)
Q Consensus 212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~ 291 (397)
++...+..|++++=+...-.+.-|.++.+.|+.....-. +.-+-.+++-+++. -..+-+-|+..+.++.+.. +
T Consensus 89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l~~~L-~~vii~vvkslKNl--RS~VsraA~~t~~difs~l----n 161 (334)
T KOG2933|consen 89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFHPESLNPML-HEVIIAVVKSLKNL--RSAVSRAACMTLADIFSSL----N 161 (334)
T ss_pred HHHHHHHHhchHHHHHHhhhHHHHHHHHhhhHHHHHHHH-HHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHH----H
Confidence 344556667766666777888888888887765443332 22344445555554 3346777888888887631 2
Q ss_pred CCcchhHHhCCcHHHHH-HhccC---CChHHHHHHHHHHHHHhcCC
Q 015951 292 KVEPPLFRDRFFLKSVV-DLTAS---ADLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 292 ~~~~~~l~~~g~v~~Lv-~lL~~---~d~dv~E~aL~aL~~L~~~~ 333 (397)
.. +.+ .+..++ .||.. ++.-++|-|..||.+++.+.
T Consensus 162 ~~----i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~v 201 (334)
T KOG2933|consen 162 NS----IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHV 201 (334)
T ss_pred HH----HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhcc
Confidence 11 111 233333 33333 24457777777777777664
No 340
>PF12055 DUF3536: Domain of unknown function (DUF3536); InterPro: IPR021923 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is typically between 274 to 285 amino acids in length. This domain is found associated with PF03065 from PFAM.
Probab=23.45 E-value=6.1e+02 Score=25.15 Aligned_cols=101 Identities=21% Similarity=0.128 Sum_probs=53.4
Q ss_pred CCHHHHHHHHHHHHhc----cCCCCchhHHHhcCCHHHHHHhcC----------CCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 140 LSLEDSQRALQELLIL----VEPIDNANDLSKLGGLSVLVGQLN----------HPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 140 ~s~e~k~~AL~~L~~L----ve~iDnA~~~~~lGGl~~Li~lL~----------s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
.+++++..+|.-|++- .-..-++.=|..+.|++++..+-- -...++...=...|+.+-.|.|...
T Consensus 66 l~~~e~~~al~LLEmQr~~l~mfTSCgWFFdeisgiE~vq~l~yA~RAieLa~~~~g~dle~~Fl~~L~~A~SN~~~~~- 144 (285)
T PF12055_consen 66 LSPEERVEALKLLEMQRHALLMFTSCGWFFDEISGIETVQILRYAARAIELARELSGVDLEPEFLERLEEAPSNIPEYG- 144 (285)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhHHHhhhcccchhHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHhCcCCCccCC-
Confidence 4677888888777752 223456777888888887743211 0122333333444444444433211
Q ss_pred HHHHcCcHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcH
Q 015951 206 QVLELGALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQ 246 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~ 246 (397)
+|-...-+++...- ...++.|-|||+++..++|...
T Consensus 145 -----~G~~iy~~~V~p~~~~~~~vaah~Ai~slf~~~~~~~ 181 (285)
T PF12055_consen 145 -----NGAEIYEKLVRPARVDLERVAAHYAISSLFEEYPEET 181 (285)
T ss_pred -----CHHHHHHHhcccccCCHHHHHHHHHHHHHhccccccC
Confidence 11112222222111 1236789999999998876633
No 341
>PF11894 DUF3414: Protein of unknown function (DUF3414); InterPro: IPR021827 This family of proteins are functionally uncharacterised. This protein is found in eukaryotes. Proteins in this family are typically between 764 to 2011 amino acids in length. This protein has a conserved LLG sequence motif.
Probab=23.29 E-value=2.3e+02 Score=34.91 Aligned_cols=61 Identities=8% Similarity=0.143 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHcC---cHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChh
Q 015951 184 DIRKISAWILGKASQNNPLVQKQVLELG---ALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLA 244 (397)
Q Consensus 184 ~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g---~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~ 244 (397)
..-..-..+|+.++++++..+..+.+.. .++.|.+++...- ..++...+.+|++++...+.
T Consensus 579 ~~L~a~L~Li~~V~~~s~~ar~~l~~~~~~~~~~~L~~L~~~~vp~~Lkaai~~~Laal~~~~~~ 643 (1691)
T PF11894_consen 579 EMLSAYLRLISSVVRNSEQARSALLENPNWNPIDILFGLLSCPVPPSLKAAIFNALAALAAKSPE 643 (1691)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHhCCCCchHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCHH
Confidence 3446778899999999999999998753 6999999999864 46888999999999644443
No 342
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=23.10 E-value=92 Score=22.22 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 015951 4 RRNRIASRALWLLVLLMITMAIG 26 (397)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~ 26 (397)
|||+.+-+.+++++++.+++..+
T Consensus 13 ~~nk~a~~gl~il~~~vl~ai~~ 35 (56)
T PF12911_consen 13 RRNKLAVIGLIILLILVLLAIFA 35 (56)
T ss_pred HhCchHHHHHHHHHHHHHHHHHH
Confidence 67888888888777777766655
No 343
>PF07923 N1221: N1221-like protein; InterPro: IPR012486 The sequences featured in this family are similar to a hypothetical protein product of ORF N1221 in the CPT1-SPC98 intergenic region of the yeast genome (P53917 from SWISSPROT). This encodes an acidic polypeptide with several possible transmembrane regions [].
Probab=23.09 E-value=1.6e+02 Score=28.86 Aligned_cols=52 Identities=21% Similarity=0.251 Sum_probs=36.8
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh--------------hcHHHHHhcCcHHHHHHhhc
Q 015951 212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL--------------AGQEMFYVEAGDLMLQDILG 263 (397)
Q Consensus 212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~--------------~~~~~f~~~gGi~~L~~lL~ 263 (397)
.+..+++-|.+++...|.+|+.+|.-++-|.- .+...+++.||++.|..+|+
T Consensus 61 ~i~~ll~~L~~~~~~~R~~al~~LlYi~~G~~~~~~s~~~ql~~i~~N~~lL~~~g~~~~l~~~L~ 126 (293)
T PF07923_consen 61 FIEKLLDQLESSDSEDRLEALRALLYIAQGTWGETASEEEQLQWIRRNVFLLYECGGFPALWELLK 126 (293)
T ss_pred HHHHHHHhccccchhhHHHHHHHHHHHHcCCccccCCHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 45567777776666677777777777765532 14456678999999999985
No 344
>PF08112 ATP-synt_E_2: ATP synthase epsilon subunit; InterPro: IPR012508 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. A-ATPases (or A1A0-ATPase) (3.6.3.14 from EC) are found exclusively in Archaea and display a close resemblance in structure and subunit composition with V-ATPases, although their function in both ATP synthesis and ATP hydrolysis is closer to that of F-ATPases []. A-ATPases are composed of two linked complexes: the A1 complex consisting of seven subunits contains the catalytic core that synthesizes/hydrolyses ATP, while the A0 complex consisting of at least two subunits forms the membrane-spanning pore []. The rotary motor in A-ATPases is composed of only two subunits, the stator subunit I and the rotor subunit C []. A-ATPases may have arisen as an adaptation to the different cellular needs and the more extreme environmental conditions faced by Archaeal species. The epsilon subunit is the smallest (7 kDa) of those found in the A1 complex. Unlike the A, B and C subunits, the epsilon subunit does not have a homologous counterpart in F- or V-ATPases []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0015986 ATP synthesis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain
Probab=23.06 E-value=2.6e+02 Score=20.54 Aligned_cols=40 Identities=23% Similarity=0.266 Sum_probs=27.8
Q ss_pred CChHHHHHHHHHHhHHhhhhhhhhhhHHhHHHHHHHHHHHHHHHhhhc
Q 015951 344 CGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIFFRKLDDS 391 (397)
Q Consensus 344 ~gL~~~L~~Lr~~~~~l~~~e~~~~~~~~l~~~~~e~~~~~~~~~~~~ 391 (397)
..++.-+.-||+.+++...+. ++.+-.|-+.++.+|++++
T Consensus 7 ~~~d~yI~~Lk~kLd~Kk~Ei--------l~~ln~EY~kiLk~r~~~l 46 (56)
T PF08112_consen 7 STIDKYISILKSKLDEKKSEI--------LSNLNMEYEKILKQRRKEL 46 (56)
T ss_pred hhHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHH
Confidence 345667778888888777665 5556677777777776654
No 345
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=22.86 E-value=3.5e+02 Score=25.71 Aligned_cols=77 Identities=16% Similarity=0.271 Sum_probs=48.2
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHh--------------------------cCChHHHHHHHHc---CcHHHHHHhhcCCC
Q 015951 174 LVGQLNHPDTDIRKISAWILGKAS--------------------------QNNPLVQKQVLEL---GALSKLMKMVKSSF 224 (397)
Q Consensus 174 Li~lL~s~~~~ir~~Aa~vLg~~a--------------------------qNNp~~Q~~vl~~---g~lp~Ll~LL~s~~ 224 (397)
++..+.+.++++|..|...+-.++ .|+|.....-++. +.+..|+..+.++.
T Consensus 48 Il~~~~~~~~gvk~~~iKFle~vIl~qs~~~~~~~~~~~~~~d~SL~~vp~~Hp~l~~~~Le~Ea~~lL~~Ll~~l~~~~ 127 (239)
T PF11935_consen 48 ILSLWDSENPGVKLAAIKFLERVILVQSPGSSDSPPRRGSPNDFSLSSVPPNHPLLNPQQLEAEANGLLDRLLDVLQSPH 127 (239)
T ss_dssp HHHGGGSSSHHHHHHHHHHHHHHHHHTS---TTS---GGGTTS--GGGS-TT-SSS-HHHHHHHHHHHHHHHHHHHC-TT
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHhcCCCCCCCccccccccCCCHHHcCCCCCcCCHHHHHHHHHHHHHHHHHHHhhcc
Confidence 345556666666666666665544 3445444444432 56888899888876
Q ss_pred --HHHHHHHHHHHHHHhcCChhcHHHHH
Q 015951 225 --VEEAVKALYTVSSLIRNNLAGQEMFY 250 (397)
Q Consensus 225 --~~v~~kAl~ALS~LiR~~~~~~~~f~ 250 (397)
..+-...+.+|+.|+|.-|.-...++
T Consensus 128 i~~~~~~a~insL~~Iak~RP~~~~~Il 155 (239)
T PF11935_consen 128 ISSPLLTAIINSLSNIAKQRPQFMSRIL 155 (239)
T ss_dssp --HHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 45677889999999988776555443
No 346
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.70 E-value=2.2e+02 Score=30.20 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=50.1
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH-HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015951 212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE-MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 282 (397)
Q Consensus 212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~-~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L 282 (397)
++..|-+-+.+.+..++.-||..|=.++.|+..... .|.+.+-+.-++.+.+....+.++|.|++.+|..=
T Consensus 39 AvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W 110 (470)
T KOG1087|consen 39 AVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTW 110 (470)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHH
Confidence 445555666666667777788877778888766555 55556666668888776535788999999998643
No 347
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=22.70 E-value=6.5e+02 Score=23.67 Aligned_cols=73 Identities=15% Similarity=-0.052 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh-cCCCHHHHHHHHHHHHHHhcCChhcHHHHHh-cCcHHHHH
Q 015951 182 DTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQ 259 (397)
Q Consensus 182 ~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL-~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~-~gGi~~L~ 259 (397)
..+.....+..+..+|..+|. .-...++.+..++ .+.++.++.-++-+|+.++. ..+++ ..-|..+.
T Consensus 97 ~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~------~~vvd~~s~w~vl~ 165 (234)
T PF12530_consen 97 FWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCE------AEVVDFYSAWKVLQ 165 (234)
T ss_pred hHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHH------HhhccHHHHHHHHH
Confidence 355666667888999998887 2223578888888 66667788899999999983 23332 24566666
Q ss_pred HhhcCC
Q 015951 260 DILGNS 265 (397)
Q Consensus 260 ~lL~s~ 265 (397)
.-|..+
T Consensus 166 ~~l~~~ 171 (234)
T PF12530_consen 166 KKLSLD 171 (234)
T ss_pred HhcCCc
Confidence 666543
No 348
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=22.20 E-value=2e+02 Score=28.56 Aligned_cols=62 Identities=21% Similarity=0.140 Sum_probs=42.1
Q ss_pred CHHHHHHHHHHHHhccCCCCch--hHHHhcCCHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCChHH
Q 015951 141 SLEDSQRALQELLILVEPIDNA--NDLSKLGGLSVLVGQLNHP--DTDIRKISAWILGKASQNNPLV 203 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iDnA--~~~~~lGGl~~Li~lL~s~--~~~ir~~Aa~vLg~~aqNNp~~ 203 (397)
+.|+..-.+..++.++.+.+.. ++. ...--..++.++.++ ..++|..|..++..+...+|..
T Consensus 175 ~~~d~~w~~~al~~~~~~~~~~~~~~~-~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~ 240 (339)
T PF12074_consen 175 SEEDLCWLLRALEALLSDHPSELSSDK-SSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL 240 (339)
T ss_pred CHhHHHHHHHHHHHHHhcchhhhhhhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH
Confidence 4566666666666666554322 122 122234566777777 8999999999999999999974
No 349
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=21.79 E-value=4.4e+02 Score=28.77 Aligned_cols=79 Identities=22% Similarity=0.221 Sum_probs=54.6
Q ss_pred CCCHHHHHHHHHHH-hhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcC--CHHHHHHhcCCCC-HHHHHHHHHHHHHH
Q 015951 121 TPSDAQLIQIAIDD-LNNSTLSLEDSQRALQELLILVEPIDNANDLSKLG--GLSVLVGQLNHPD-TDIRKISAWILGKA 196 (397)
Q Consensus 121 ~~~d~~lmk~~i~~-L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lG--Gl~~Li~lL~s~~-~~ir~~Aa~vLg~~ 196 (397)
..+|.-.-...++. +.+...+.+++...+..|..+++ ||..-...+| ..++|+.++...+ ..++..+..|+-.+
T Consensus 16 ~~~D~~s~~t~l~~~~~~~~~~~~~~~~~l~~L~~~L~--~n~~l~~~igWDL~~~l~~~~~~~~~~~~~~~~~~~l~~l 93 (633)
T PF08568_consen 16 PAEDYLSYLTILDIYLEDVNYSNEEKEEFLPELLEILQ--DNQELTYEIGWDLPKLLLPFLPSSEISPCVDCCMKCLEEL 93 (633)
T ss_pred CCcCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHh--hCHHHHHHccccCHHHHHHHhhhhhcchHHHHHHHHHHHH
Confidence 34455544444444 23223566888899999999885 4676666665 4667778876554 78899999999999
Q ss_pred hcC-Ch
Q 015951 197 SQN-NP 201 (397)
Q Consensus 197 aqN-Np 201 (397)
|++ ||
T Consensus 94 a~~gnP 99 (633)
T PF08568_consen 94 ARLGNP 99 (633)
T ss_pred HHhCCH
Confidence 985 55
No 350
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=21.56 E-value=5.6e+02 Score=22.48 Aligned_cols=100 Identities=16% Similarity=0.066 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHHhcCChHH---------HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc
Q 015951 184 DIRKISAWILGKASQNNPLV---------QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG 254 (397)
Q Consensus 184 ~ir~~Aa~vLg~~aqNNp~~---------Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gG 254 (397)
..|..+.++|-++-.+++.. -..+++....+.|++.+.+++..+-..++..+..+++++....+.=++ =-
T Consensus 37 ~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele-~~ 115 (168)
T PF12783_consen 37 RSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE-VF 115 (168)
T ss_pred HHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 44455555555554443221 122445568899999988877777777888888887654332111110 11
Q ss_pred HHHHHH-hhcCCCccHHHHHHHHHHHHHHhh
Q 015951 255 DLMLQD-ILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 255 i~~L~~-lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
++.+.. ++.+++.+..-|.-+...+..++.
T Consensus 116 l~~i~~~il~~~~~~~~~k~~~Le~l~~l~~ 146 (168)
T PF12783_consen 116 LSHIILRILESDNSSLWQKELALEILRELCK 146 (168)
T ss_pred HHHHHHHHHccCCCcHHHHHHHHHHHHHHHh
Confidence 233333 566554344566778888888885
No 351
>PF08454 RIH_assoc: RyR and IP3R Homology associated; InterPro: IPR013662 This eukaryotic domain is found in ryanodine receptors (RyR) and inositol 1, 4, 5-trisphosphate receptors (IP3R) which together form a superfamily of homotetrameric ligand-gated intracellular Ca2+ channels []. There seems to be no known function for this domain []. Also see the IP3-binding domain IPR000699 from INTERPRO and IPR003608 from INTERPRO.
Probab=21.22 E-value=1.6e+02 Score=24.74 Aligned_cols=45 Identities=11% Similarity=-0.021 Sum_probs=37.9
Q ss_pred cCCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHHcCcHHHHHHhhcC
Q 015951 178 LNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMKMVKS 222 (397)
Q Consensus 178 L~s~~~~ir~~Aa~vLg~~aqN-Np~~Q~~vl~~g~lp~Ll~LL~s 222 (397)
++..+-++-..+..+|...+|+ ++..|..+.+..++..+..+|..
T Consensus 62 ~~~~~~~~~~q~~~tL~E~iQGPC~eNQ~~l~~s~~~~~i~~lL~~ 107 (109)
T PF08454_consen 62 INSDNIELIIQCFDTLTEFIQGPCIENQIALANSKFLDIINDLLSK 107 (109)
T ss_pred hhHHHHHHHHHHHHHHHHHHcCCCHHhHHHHHHccHHHHHHHHHhh
Confidence 3445667778888999999999 99999999999999998888754
No 352
>PF07539 DRIM: Down-regulated in metastasis; InterPro: IPR011430 These eukaryotic proteins include DRIM (Down-Regulated In Metastasis) (O75691 from SWISSPROT), which is differentially expressed in metastatic and non-metastatic human breast carcinoma cells []. It is believed to be involved in processing of non-coding RNA [].
Probab=20.97 E-value=96 Score=27.27 Aligned_cols=91 Identities=14% Similarity=0.083 Sum_probs=50.3
Q ss_pred CCchhHHHhcCCHH-HHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHH
Q 015951 159 IDNANDLSKLGGLS-VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSS 237 (397)
Q Consensus 159 iDnA~~~~~lGGl~-~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~ 237 (397)
.-|.+.+.+..-+. .+..+|.+++++||..|..||.+- ++|.... + =..|-.|+++.. .|. . |..
T Consensus 6 f~npk~l~~~~~l~~~~~~LL~~~d~~vQklAL~cll~~--k~~~l~p----Y--~d~L~~Lldd~~--frd-e---L~~ 71 (141)
T PF07539_consen 6 FKNPKSLYRSDELYDALLRLLSSRDPEVQKLALDCLLTW--KDPYLTP----Y--KDNLENLLDDKT--FRD-E---LTT 71 (141)
T ss_pred cCCcHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CcHHHHh----H--HHHHHHHcCcch--HHH-H---HHh
Confidence 34455555554444 455899999999999999999885 4553222 2 245666666532 111 1 111
Q ss_pred HhcC-ChhcHHHHHhcCcHHHHHHhhc
Q 015951 238 LIRN-NLAGQEMFYVEAGDLMLQDILG 263 (397)
Q Consensus 238 LiR~-~~~~~~~f~~~gGi~~L~~lL~ 263 (397)
..-. .....+.-....-+++++++|.
T Consensus 72 f~~~~~~~~I~~ehR~~l~pvvlRILy 98 (141)
T PF07539_consen 72 FNLSDESSVIEEEHRPELMPVVLRILY 98 (141)
T ss_pred hcccCCcCCCCHHHHhHHHHHHHHHHH
Confidence 1111 1111233334566788888764
No 353
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=20.80 E-value=2e+02 Score=23.23 Aligned_cols=52 Identities=19% Similarity=0.264 Sum_probs=36.9
Q ss_pred CHHHHHHHHHHHHHHhcC----ChHHHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHH
Q 015951 182 DTDIRKISAWILGKASQN----NPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSL 238 (397)
Q Consensus 182 ~~~ir~~Aa~vLg~~aqN----Np~~Q~~vl~~g~lp~Ll~LL~s~~--~~v~~kAl~ALS~L 238 (397)
+-.+|..|+.+|+.++.+ +|..|.. .+..|.+.+.+++ ...+--|+..|+.+
T Consensus 19 h~~LRd~AA~lL~~I~~~~~~~~~~L~~R-----i~~tl~k~l~d~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 19 HWALRDFAASLLAQICRKFSSSYPTLQPR-----ITRTLLKALLDPKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred hHHHHHHHHHHHHHHHHHhccccchHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999965 3444443 4556777776544 35577788888877
No 354
>PLN00094 aconitate hydratase 2; Provisional
Probab=20.55 E-value=4.2e+02 Score=30.48 Aligned_cols=102 Identities=24% Similarity=0.215 Sum_probs=53.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015951 122 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN 200 (397)
Q Consensus 122 ~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN 200 (397)
|=+++++.++++.|.++.. .+....++-|.+-|-+ .|.|- .+|.+-+..++.-=.+...--+..|..+||++--.-
T Consensus 90 pl~~~q~~~~~~ll~~~~~--~~~~~~~~l~~~rv~pgvd~aa-~vka~fl~~i~~g~~~~~~i~~~~a~~llg~m~ggy 166 (938)
T PLN00094 90 PLDAKQVSELIAQLEAPKS--EDADRLVDLLVNRVPPGVDEAA-YVKASWLAAVAKGETRSPLISRARAVEILGTMQGGY 166 (938)
T ss_pred CCCHHHHHHHHHHhcCCCC--ccHHHHHHHHhhCCCCCCChHH-HHHHHHHHHHHcCCCCCCCcCHHHHHHHHhhccCCC
Confidence 3356777777777776632 2333455555555543 44332 334444444433211112223556677777664211
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015951 201 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 239 (397)
Q Consensus 201 p~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~Li 239 (397)
-+..|+.+|+ +.++...|..+|+..+
T Consensus 167 -----------nv~~l~~~l~--d~~~a~~a~~~l~~~~ 192 (938)
T PLN00094 167 -----------NISPLVDALD--DDELGRIAADQLSHTL 192 (938)
T ss_pred -----------cHHHHHHHhc--CHHHHHHHHHHHhhcE
Confidence 1667777774 5566677777777644
No 355
>PF06796 NapE: Periplasmic nitrate reductase protein NapE; InterPro: IPR010649 This family consists of several bacterial periplasmic nitrate reductase NapE proteins. Seven genes, napKEFDABC, encoding the periplasmic nitrate reductase system were cloned from the denitrifying phototrophic bacterium Rhodobacter sphaeroides. NapE is thought to be a transmembrane protein [].
Probab=20.20 E-value=1.5e+02 Score=22.06 Aligned_cols=25 Identities=20% Similarity=0.218 Sum_probs=19.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhh
Q 015951 2 NTRRNRIASRALWLLVLLMITMAIG 26 (397)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~ 26 (397)
++||.-+....++..+++|+.+++.
T Consensus 12 ~~k~~E~~~flfl~~~l~PiL~v~~ 36 (56)
T PF06796_consen 12 STKRSELKAFLFLAVVLFPILAVAF 36 (56)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677878888888889999976554
No 356
>PF09450 DUF2019: Domain of unknown function (DUF2019); InterPro: IPR018568 Protein of unknown function found in bacteria. ; PDB: 2I9C_A.
Probab=20.18 E-value=78 Score=26.64 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=19.1
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHH
Q 015951 170 GLSVLVGQLNHPDTDIRKISAWIL 193 (397)
Q Consensus 170 Gl~~Li~lL~s~~~~ir~~Aa~vL 193 (397)
|-..|+.+|+|+++.||..||..+
T Consensus 48 ~r~aLl~LL~hpn~~VRl~AA~~~ 71 (106)
T PF09450_consen 48 QRDALLPLLKHPNMQVRLWAAAHT 71 (106)
T ss_dssp GGGGGGGGGGSS-HHHHHHHHHTT
T ss_pred hHHHHHHHHcCCChhHHHHHHHHH
Confidence 347888999999999999988654
Done!