Query 015951
Match_columns 397
No_of_seqs 265 out of 1189
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 05:21:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015951.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015951hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xqr_A HSPBP1 protein; armadil 100.0 5.7E-39 1.9E-43 313.4 22.2 253 109-373 13-281 (296)
2 4hxt_A De novo protein OR329; 99.9 2.3E-22 7.9E-27 185.3 23.2 217 128-353 4-221 (252)
3 4db6_A Armadillo repeat protei 99.9 4.6E-22 1.6E-26 180.1 21.2 193 130-331 16-209 (210)
4 4db8_A Armadillo-repeat protei 99.9 5.7E-22 2E-26 184.1 19.6 213 133-354 19-232 (252)
5 3tt9_A Plakophilin-2; cell adh 99.9 7.8E-22 2.7E-26 186.1 20.7 198 170-377 9-225 (233)
6 4db6_A Armadillo repeat protei 99.9 3.9E-21 1.3E-25 174.0 19.3 181 166-353 9-189 (210)
7 4db8_A Armadillo-repeat protei 99.9 1E-20 3.5E-25 175.7 19.3 196 127-331 55-251 (252)
8 4hxt_A De novo protein OR329; 99.9 2.6E-20 8.9E-25 171.5 21.8 199 127-334 45-244 (252)
9 3ul1_B Importin subunit alpha- 99.9 9.2E-20 3.1E-24 188.9 26.7 221 128-355 59-285 (510)
10 3nmw_A APC variant protein; AR 99.9 1.5E-20 5.2E-25 187.4 20.0 213 141-355 97-316 (354)
11 3nmz_A APC variant protein; pr 99.8 7.3E-20 2.5E-24 188.3 19.4 212 142-355 214-432 (458)
12 3tpo_A Importin subunit alpha- 99.8 5.9E-19 2E-23 183.3 26.5 221 128-355 78-304 (529)
13 1xm9_A Plakophilin 1; armadill 99.8 2.2E-19 7.6E-24 183.8 22.4 175 128-312 4-195 (457)
14 3nmw_A APC variant protein; AR 99.8 4.8E-20 1.7E-24 183.8 16.2 207 142-355 46-274 (354)
15 3l6x_A Catenin delta-1; cateni 99.8 6.6E-19 2.3E-23 185.8 23.0 196 167-370 46-261 (584)
16 3tpo_A Importin subunit alpha- 99.8 9.8E-19 3.4E-23 181.6 23.9 216 131-355 256-478 (529)
17 1xm9_A Plakophilin 1; armadill 99.8 3.7E-19 1.3E-23 182.2 20.3 191 170-370 3-211 (457)
18 4b8j_A Importin subunit alpha- 99.8 5.5E-18 1.9E-22 174.6 27.1 221 127-356 75-298 (528)
19 4b8j_A Importin subunit alpha- 99.8 1E-18 3.6E-23 179.9 20.9 217 128-353 246-475 (528)
20 3ul1_B Importin subunit alpha- 99.8 1.1E-18 3.8E-23 180.8 20.7 208 141-355 245-459 (510)
21 3tt9_A Plakophilin-2; cell adh 99.8 9.7E-19 3.3E-23 164.9 15.9 197 128-331 10-229 (233)
22 1wa5_B Importin alpha subunit; 99.8 2.2E-17 7.4E-22 170.6 27.1 218 128-354 89-309 (530)
23 2jdq_A Importin alpha-1 subuni 99.8 6.9E-18 2.4E-22 168.5 22.5 200 127-334 193-393 (450)
24 3nmz_A APC variant protein; pr 99.8 1.9E-18 6.6E-23 177.7 18.7 198 128-334 245-453 (458)
25 3now_A UNC-45 protein, SD10334 99.8 4.9E-18 1.7E-22 184.9 20.1 224 126-356 377-635 (810)
26 2jdq_A Importin alpha-1 subuni 99.8 2.1E-17 7.2E-22 165.0 22.1 221 126-355 64-287 (450)
27 1wa5_B Importin alpha subunit; 99.8 1.5E-17 5.2E-22 171.7 21.7 221 127-355 131-352 (530)
28 1jdh_A Beta-catenin; beta-cate 99.8 5.6E-17 1.9E-21 165.5 23.5 222 126-355 59-319 (529)
29 3now_A UNC-45 protein, SD10334 99.8 9.8E-18 3.3E-22 182.6 17.5 217 128-354 538-760 (810)
30 1xqr_A HSPBP1 protein; armadil 99.7 3.9E-17 1.3E-21 159.0 17.4 166 183-355 54-220 (296)
31 2z6h_A Catenin beta-1, beta-ca 99.7 2.4E-16 8.1E-21 167.2 24.8 223 126-356 56-317 (644)
32 3l6x_A Catenin delta-1; cateni 99.7 1.3E-16 4.4E-21 168.4 18.4 196 128-332 50-271 (584)
33 2z6g_A B-catenin; FULL-length, 99.7 1.9E-15 6.4E-20 164.6 24.4 222 126-355 192-452 (780)
34 1jdh_A Beta-catenin; beta-cate 99.7 1.7E-15 5.8E-20 154.5 20.2 221 128-358 187-411 (529)
35 2z6h_A Catenin beta-1, beta-ca 99.7 3.2E-15 1.1E-19 158.5 20.8 221 128-357 184-470 (644)
36 2z6g_A B-catenin; FULL-length, 99.6 3.3E-15 1.1E-19 162.6 16.6 222 125-356 398-646 (780)
37 3opb_A SWI5-dependent HO expre 99.5 7E-13 2.4E-17 142.9 18.3 219 126-356 457-709 (778)
38 3grl_A General vesicular trans 99.5 2.2E-12 7.5E-17 136.2 19.7 243 107-355 38-322 (651)
39 3opb_A SWI5-dependent HO expre 99.4 4.9E-12 1.7E-16 136.3 18.8 167 162-334 450-638 (778)
40 3grl_A General vesicular trans 99.1 1.7E-09 5.9E-14 114.2 18.9 220 122-352 17-262 (651)
41 4gmo_A Putative uncharacterize 99.0 2.4E-09 8.2E-14 114.9 14.3 171 169-345 34-228 (684)
42 3ltj_A Alpharep-4; protein eng 98.9 8.9E-08 3.1E-12 85.5 19.2 157 122-330 10-166 (201)
43 3ltm_A Alpha-REP4; protein eng 98.9 8.5E-08 2.9E-12 86.3 17.8 154 125-330 18-171 (211)
44 3ltj_A Alpharep-4; protein eng 98.8 6.8E-08 2.3E-12 86.3 13.8 153 126-330 45-197 (201)
45 4gmo_A Putative uncharacterize 98.8 2.1E-08 7.1E-13 107.6 12.2 192 131-330 39-257 (684)
46 3ltm_A Alpha-REP4; protein eng 98.8 8.3E-08 2.8E-12 86.4 13.6 156 126-333 50-205 (211)
47 1oyz_A Hypothetical protein YI 98.7 6.5E-07 2.2E-11 84.0 18.2 121 178-330 100-220 (280)
48 1oyz_A Hypothetical protein YI 98.6 1E-06 3.5E-11 82.7 16.8 146 141-330 104-249 (280)
49 3dad_A FH1/FH2 domain-containi 98.5 5.1E-06 1.7E-10 81.5 18.5 193 123-322 115-327 (339)
50 3b2a_A TON_1937, putative unch 98.4 1.9E-05 6.3E-10 73.9 18.2 186 127-333 34-220 (265)
51 2qk2_A LP04448P; mini spindles 98.4 5.4E-06 1.8E-10 76.5 14.6 181 131-332 20-206 (242)
52 4fdd_A Transportin-1; heat rep 98.3 1.6E-06 5.4E-11 94.3 10.7 175 145-331 338-512 (852)
53 1b3u_A Protein (protein phosph 98.3 7.8E-06 2.7E-10 83.5 15.0 134 141-284 177-310 (588)
54 1b3u_A Protein (protein phosph 98.3 4.9E-06 1.7E-10 85.0 13.5 172 141-330 415-586 (588)
55 1te4_A Conserved protein MTH18 98.3 6.3E-08 2.2E-12 81.6 -0.6 119 169-328 12-130 (131)
56 2vgl_B AP-2 complex subunit be 98.3 3E-05 1E-09 81.3 18.8 166 141-334 26-192 (591)
57 4fdd_A Transportin-1; heat rep 98.2 6.7E-06 2.3E-10 89.3 12.2 188 131-332 261-472 (852)
58 2vgl_B AP-2 complex subunit be 98.2 2E-05 6.9E-10 82.6 14.8 160 107-284 29-189 (591)
59 2qk1_A Protein STU2; STU2P, XM 98.1 2.4E-05 8.4E-10 73.5 12.7 182 140-331 28-220 (249)
60 3qml_C Protein SLS1, nucleotid 98.1 1.3E-05 4.4E-10 77.5 10.7 137 142-284 42-189 (315)
61 1ibr_B P95, importin beta-1 su 98.0 0.00014 4.7E-09 71.8 16.5 198 125-332 171-438 (462)
62 1u6g_C TIP120 protein, CAND1; 98.0 0.00011 3.6E-09 83.0 16.8 193 128-333 8-206 (1230)
63 1ibr_B P95, importin beta-1 su 97.9 4.3E-05 1.5E-09 75.5 10.4 200 124-333 33-248 (462)
64 1te4_A Conserved protein MTH18 97.9 1E-05 3.5E-10 67.8 5.0 88 170-281 43-130 (131)
65 1qgr_A Protein (importin beta 97.9 6.4E-05 2.2E-09 80.7 11.9 180 144-333 344-539 (876)
66 2bpt_A Importin beta-1 subunit 97.9 9.6E-05 3.3E-09 79.1 13.2 198 127-334 325-532 (861)
67 1w63_A Adapter-related protein 97.8 0.00047 1.6E-08 72.8 16.9 178 130-334 74-266 (618)
68 2bpt_A Importin beta-1 subunit 97.7 5.7E-05 1.9E-09 80.9 8.9 197 125-332 497-712 (861)
69 1u6g_C TIP120 protein, CAND1; 97.7 0.00083 2.8E-08 75.7 18.1 200 124-332 46-285 (1230)
70 1w63_A Adapter-related protein 97.7 0.00064 2.2E-08 71.7 15.7 169 134-334 42-211 (618)
71 2qk2_A LP04448P; mini spindles 97.7 0.00064 2.2E-08 62.4 13.6 146 125-284 55-205 (242)
72 2vgl_A Adaptor protein complex 97.6 0.0034 1.2E-07 66.4 20.8 168 139-334 49-219 (621)
73 3b2a_A TON_1937, putative unch 97.6 0.00066 2.3E-08 63.5 13.1 149 170-334 34-182 (265)
74 1qgr_A Protein (importin beta 97.6 0.0011 3.7E-08 71.1 16.5 200 125-333 171-397 (876)
75 3dad_A FH1/FH2 domain-containi 97.4 0.0061 2.1E-07 59.7 17.0 154 173-334 122-289 (339)
76 2db0_A 253AA long hypothetical 97.4 0.0087 3E-07 54.2 16.4 140 179-340 80-219 (253)
77 3tjz_B Coatomer subunit gamma; 97.3 0.016 5.4E-07 57.3 18.6 185 122-333 22-207 (355)
78 4ffb_C Protein STU2; tubulin f 97.2 0.0084 2.9E-07 56.3 15.4 181 141-332 22-213 (278)
79 2vgl_A Adaptor protein complex 97.1 0.0029 9.9E-08 66.9 12.0 111 123-244 104-220 (621)
80 2qk1_A Protein STU2; STU2P, XM 97.1 0.011 3.9E-07 55.0 14.6 172 107-284 32-220 (249)
81 3eg5_B Protein diaphanous homo 96.9 0.046 1.6E-06 54.5 18.5 167 146-320 85-283 (383)
82 1ho8_A Vacuolar ATP synthase s 96.8 0.059 2E-06 55.1 18.0 242 126-384 77-352 (480)
83 2fv2_A RCD1 required for cell 96.6 0.03 1E-06 52.9 13.1 207 126-341 3-233 (268)
84 2of3_A ZYG-9; multifunctional 96.2 0.087 3E-06 50.0 14.0 168 141-332 59-237 (266)
85 2db0_A 253AA long hypothetical 96.0 0.27 9.2E-06 44.6 15.2 201 109-333 31-248 (253)
86 2f31_A Diaphanous protein homo 96.0 0.14 4.6E-06 47.3 14.1 133 149-284 22-180 (233)
87 3ibv_A Exportin-T; karyopherin 95.4 0.71 2.4E-05 51.3 19.7 112 121-241 1-120 (980)
88 2bnx_A Diaphanous protein homo 95.3 0.45 1.5E-05 47.3 15.8 157 157-321 36-222 (386)
89 2iw3_A Elongation factor 3A; a 95.2 0.21 7.1E-06 55.6 14.4 191 124-332 131-325 (986)
90 3tjz_B Coatomer subunit gamma; 95.1 1.1 3.7E-05 44.1 17.9 209 99-331 38-279 (355)
91 2bnx_A Diaphanous protein homo 94.8 0.26 8.7E-06 49.1 12.5 142 210-355 46-213 (386)
92 3eg5_B Protein diaphanous homo 94.6 1.2 4.1E-05 44.2 16.8 243 95-356 5-276 (383)
93 2f31_A Diaphanous protein homo 94.6 0.67 2.3E-05 42.6 13.9 148 203-355 36-209 (233)
94 2x19_B Importin-13; nuclear tr 94.5 1 3.5E-05 48.9 17.5 138 179-333 459-601 (963)
95 4ady_A RPN2, 26S proteasome re 94.4 0.18 6.1E-06 55.8 10.9 134 170-334 542-679 (963)
96 2fv2_A RCD1 required for cell 94.3 0.44 1.5E-05 44.9 11.9 161 123-284 45-224 (268)
97 1wa5_C Importin alpha RE-expor 94.2 0.32 1.1E-05 53.4 12.8 181 141-332 418-629 (960)
98 4hat_C Exportin-1; heat repeat 94.1 0.31 1.1E-05 54.5 12.3 145 181-334 465-621 (1023)
99 4ady_A RPN2, 26S proteasome re 94.0 0.68 2.3E-05 51.2 14.6 140 122-283 573-718 (963)
100 1ho8_A Vacuolar ATP synthase s 93.7 0.036 1.2E-06 56.8 3.5 82 161-242 385-478 (480)
101 2x1g_F Cadmus; transport prote 93.5 0.41 1.4E-05 52.3 12.0 131 141-284 477-615 (971)
102 3u0r_A Apoptosis inhibitor 5; 92.9 0.64 2.2E-05 47.6 11.1 122 180-328 39-160 (507)
103 3gs3_A Symplekin, LD45768P; he 92.6 4.4 0.00015 37.9 16.0 144 126-284 15-173 (257)
104 2x19_B Importin-13; nuclear tr 92.5 1.3 4.6E-05 48.0 14.0 136 140-284 461-599 (963)
105 1lsh_A Lipovitellin (LV-1N, LV 92.3 4.1 0.00014 45.6 17.9 128 109-250 342-477 (1056)
106 3o2t_A Symplekin; heat repeat, 91.6 3.3 0.00011 41.2 14.4 197 123-334 22-259 (386)
107 3ebb_A Phospholipase A2-activa 91.6 9.8 0.00034 36.3 17.9 219 77-312 55-286 (304)
108 1upk_A MO25 protein; transfera 91.5 11 0.00037 36.8 17.5 149 183-337 137-289 (341)
109 1wa5_C Importin alpha RE-expor 91.1 6 0.0002 43.2 17.4 193 130-332 459-671 (960)
110 2iw3_A Elongation factor 3A; a 91.0 1.6 5.6E-05 48.4 12.7 173 143-332 29-205 (986)
111 2x1g_F Cadmus; transport prote 90.9 1 3.5E-05 49.2 11.0 134 181-332 476-616 (971)
112 1mhq_A ADP-ribosylation factor 90.5 1.2 4.1E-05 38.3 8.8 70 173-242 42-118 (148)
113 1x5b_A Signal transducing adap 90.1 1.1 3.8E-05 39.1 8.4 67 173-239 56-124 (163)
114 3ldz_A STAM-1, signal transduc 89.8 1.3 4.4E-05 37.6 8.4 67 173-239 46-113 (140)
115 1juq_A ADP-ribosylation factor 89.6 1.3 4.3E-05 39.1 8.4 71 172-242 53-130 (171)
116 3m1i_C Exportin-1; heat repeat 89.2 3.5 0.00012 45.6 13.7 147 181-333 465-620 (1049)
117 4ffb_C Protein STU2; tubulin f 87.8 15 0.00051 33.7 15.1 145 174-331 14-168 (278)
118 4hat_C Exportin-1; heat repeat 87.5 10 0.00035 42.2 15.9 111 120-241 10-130 (1023)
119 1lrv_A LRV, leucine-rich repea 87.5 0.31 1.1E-05 45.5 3.1 44 173-234 78-121 (244)
120 3m1i_C Exportin-1; heat repeat 87.2 11 0.00036 41.7 15.8 69 120-199 10-79 (1049)
121 3c2g_A SYS-1 protein; beta-cat 87.1 3.7 0.00013 40.6 10.5 183 146-330 261-472 (619)
122 3gjx_A Exportin-1; transport, 86.8 17 0.00058 40.8 17.2 110 121-241 23-142 (1073)
123 3qml_C Protein SLS1, nucleotid 86.4 5.5 0.00019 38.3 11.2 130 188-330 47-188 (315)
124 3zyq_A Hepatocyte growth facto 85.6 2.3 7.8E-05 39.0 8.0 68 173-240 49-118 (226)
125 3g2s_A C-terminal fragment of 85.5 4.4 0.00015 34.8 9.2 70 173-242 52-128 (149)
126 1elk_A Target of MYB1; superhe 85.5 3.1 0.00011 35.9 8.3 66 173-238 57-128 (157)
127 1lrv_A LRV, leucine-rich repea 85.5 0.34 1.1E-05 45.2 2.2 21 172-192 101-121 (244)
128 1dvp_A HRS, hepatocyte growth 84.1 5.2 0.00018 36.3 9.6 67 173-239 46-114 (220)
129 2of3_A ZYG-9; multifunctional 83.8 4.7 0.00016 37.9 9.4 101 170-284 133-236 (266)
130 3ebb_A Phospholipase A2-activa 83.2 15 0.00051 35.1 12.8 148 124-275 145-297 (304)
131 3u0r_A Apoptosis inhibitor 5; 79.9 18 0.00061 37.0 12.4 122 141-284 41-163 (507)
132 1x5b_A Signal transducing adap 79.3 5.9 0.0002 34.4 7.7 89 231-330 35-124 (163)
133 3ldz_A STAM-1, signal transduc 78.7 3.4 0.00011 35.0 5.8 90 230-330 24-113 (140)
134 3g2s_A C-terminal fragment of 77.4 4.9 0.00017 34.5 6.5 109 212-331 11-126 (149)
135 1mhq_A ADP-ribosylation factor 77.1 4.6 0.00016 34.5 6.2 90 231-331 21-116 (148)
136 2xpp_A IWS1, ECU08_0440; trans 75.3 8.5 0.00029 32.9 7.4 123 100-235 1-131 (145)
137 3gjx_A Exportin-1; transport, 74.0 33 0.0011 38.4 13.7 138 181-334 491-647 (1073)
138 1juq_A ADP-ribosylation factor 73.8 4.3 0.00015 35.6 5.3 109 212-331 13-128 (171)
139 3ibv_A Exportin-T; karyopherin 67.3 42 0.0015 37.0 12.7 151 177-331 201-361 (980)
140 3zyq_A Hepatocyte growth facto 66.9 8.8 0.0003 35.0 6.0 109 212-331 8-118 (226)
141 3oc3_A Helicase MOT1, MOT1; re 66.6 18 0.00063 38.1 8.7 161 143-330 243-403 (800)
142 1elk_A Target of MYB1; superhe 63.6 27 0.00092 29.9 8.2 111 231-362 36-150 (157)
143 1upk_A MO25 protein; transfera 62.6 1.2E+02 0.004 29.5 17.2 153 126-284 125-283 (341)
144 3a6p_A Exportin-5; exportin-5, 61.0 71 0.0024 36.0 13.2 105 128-241 13-126 (1204)
145 3l9t_A Putative uncharacterize 59.8 1.1E+02 0.0037 28.2 14.2 132 176-335 78-211 (240)
146 3rru_A TOM1L1 protein; structu 57.0 34 0.0012 29.2 7.6 68 176-243 60-133 (152)
147 1dvp_A HRS, hepatocyte growth 47.0 23 0.00079 31.8 5.1 89 232-331 26-115 (220)
148 3a6p_A Exportin-5; exportin-5, 43.6 2E+02 0.0069 32.3 13.2 131 181-331 25-162 (1204)
149 2rg8_A Programmed cell death p 39.4 1.8E+02 0.0061 24.8 9.5 57 141-199 57-116 (165)
150 1lsh_A Lipovitellin (LV-1N, LV 37.0 2.1E+02 0.0071 31.8 11.8 58 170-235 472-538 (1056)
151 4flb_A Regulation of nuclear P 36.1 42 0.0014 27.4 4.6 62 171-242 10-71 (132)
152 1n4k_A Inositol 1,4,5-trisphos 36.0 2.7E+02 0.0092 27.0 11.3 110 126-242 228-379 (381)
153 1sz9_A PCF11 protein; RNA poly 35.2 1.7E+02 0.0059 24.3 8.5 91 180-282 22-112 (144)
154 3gae_A Protein DOA1; UFD3, CDC 35.0 1E+02 0.0035 28.3 7.6 164 99-284 34-217 (253)
155 2xpp_A IWS1, ECU08_0440; trans 31.4 1.7E+02 0.0059 24.7 7.8 80 200-284 50-136 (145)
156 3c2g_A SYS-1 protein; beta-cat 31.0 3.5E+02 0.012 26.8 10.7 119 232-360 263-382 (619)
157 3hjl_A Flagellar motor switch 30.0 1.2E+02 0.0042 29.1 7.5 75 191-265 119-210 (329)
158 1vsy_5 Proteasome activator BL 28.7 1E+02 0.0035 34.2 7.5 160 116-284 786-966 (997)
159 3h3g_B Parathyroid hormone-rel 27.0 63 0.0022 19.0 2.9 18 102-120 4-21 (24)
160 3trt_A Vimentin; cytoskeleton, 26.9 87 0.003 23.1 4.7 19 344-362 5-23 (77)
161 3oc3_A Helicase MOT1, MOT1; re 25.7 1.9E+02 0.0067 30.5 8.3 139 172-330 177-327 (800)
162 4atg_A TAF6; transcription, TF 25.4 3.5E+02 0.012 23.9 10.8 88 146-238 64-160 (196)
163 1bwx_A Parathyroid hormone; pe 25.2 36 0.0012 22.4 1.8 13 107-119 19-31 (39)
164 1et1_A Parathyroid hormone; he 23.9 40 0.0014 21.6 1.8 13 107-119 19-31 (34)
165 1vdy_A Hypothetical protein (R 23.7 1.1E+02 0.0038 25.7 5.2 92 231-332 31-131 (140)
166 3l9t_A Putative uncharacterize 23.5 4.3E+02 0.015 24.2 13.1 41 212-252 179-219 (240)
167 3l3f_X Protein DOA1, DOA1/UFD3 22.5 5.3E+02 0.018 24.9 11.0 165 149-338 149-333 (362)
168 3vld_A DNA mismatch repair pro 22.4 3.8E+02 0.013 27.3 9.6 146 124-282 71-223 (500)
169 3pst_A Protein DOA1; protein d 22.1 3.8E+02 0.013 26.6 9.5 134 145-284 243-389 (425)
170 3pst_A Protein DOA1; protein d 21.0 6.2E+02 0.021 25.1 11.4 134 186-335 243-393 (425)
171 1xrd_A LH-1, light-harvesting 20.9 76 0.0026 22.2 2.9 38 2-48 9-47 (52)
172 3nfq_A Transcription factor IW 20.4 3.9E+02 0.013 23.1 8.1 79 199-281 64-148 (170)
No 1
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=100.00 E-value=5.7e-39 Score=313.40 Aligned_cols=253 Identities=24% Similarity=0.292 Sum_probs=213.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhCC----------CCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHH-h
Q 015951 109 QMEIKELMEKLKTPSDAQLIQIAIDDLNNS----------TLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG-Q 177 (397)
Q Consensus 109 ~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~----------~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~-l 177 (397)
..||.++|+ ++|||+++||+++.+|.++ +.+.+.|+.|++.|.++++++|||++|++.||+|+|+. +
T Consensus 13 ~~~~~~~~~--~~~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~l 90 (296)
T 1xqr_A 13 LVPRGSHMR--GQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRY 90 (296)
T ss_dssp -------CC--SCHHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTT
T ss_pred hHHHHHHHc--CCCCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHH
Confidence 568898886 5699999999999999997 45668999999999999999999999999999999999 9
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHH
Q 015951 178 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDL 256 (397)
Q Consensus 178 L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~-~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~ 256 (397)
|+++++++|..|+|+||++++|||.+|+.+++.|++|+|+++|+++ +..++++|+||||+++|+++++++.|+++||++
T Consensus 91 L~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~ 170 (296)
T 1xqr_A 91 LEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFS 170 (296)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHH
T ss_pred HcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHH
Confidence 9999999999999999999999999999999999999999999964 688999999999999999999999999999999
Q ss_pred HHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHH
Q 015951 257 MLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTE 336 (397)
Q Consensus 257 ~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~ 336 (397)
.|+.+|+++ +.++|.+|+|+|++|+.. +++.+..+++.|+++.|+.+|.+++++++++|+.+|.+|+...+..
T Consensus 171 ~L~~lL~~~--d~~v~~~A~~aLs~L~~~-----~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 171 VLMRAMQQQ--VQKLKVKSAFLLQNLLVG-----HPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHHHSS--CHHHHHHHHHHHHHHHHH-----CGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCC--CHHHHHHHHHHHHHHHhC-----ChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 999999986 778999999999999963 6778899999999999999999999999999999999999885533
Q ss_pred HHHHHhcCCh-HHHHHHHHHHhHHhhh---hhhhhhhHHhH
Q 015951 337 ALVLKDFCGL-DTALERLRQQLQEVML---EEDQRDYAMDV 373 (397)
Q Consensus 337 r~~~~~~~gL-~~~L~~Lr~~~~~l~~---~e~~~~~~~~l 373 (397)
...++ .. ..+...|+..++.+.. .++..+||..+
T Consensus 244 ~~~~~---~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~i 281 (296)
T 1xqr_A 244 VRECR---EPELGLEELLRHRCQLLQQHEEYQEELEFCEKL 281 (296)
T ss_dssp HHHHH---CGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred HHHHh---ccHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 33332 22 2234445555555441 24455566555
No 2
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.90 E-value=2.3e-22 Score=185.26 Aligned_cols=217 Identities=18% Similarity=0.227 Sum_probs=194.5
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCC-chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 206 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD-nA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~ 206 (397)
+..+++.+.+++ ++.+..|+..|..++...+ +...+.+.|+++.|+++|+++++++|..|+++|++++.+++..+..
T Consensus 4 i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 81 (252)
T 4hxt_A 4 VEKLVKLLTSTD--SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA 81 (252)
T ss_dssp HHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence 566778887764 7889999999999987664 8889999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015951 207 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 286 (397)
Q Consensus 207 vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~ 286 (397)
+.+.|++|.|+.++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ +..++..++++|++|+.
T Consensus 82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~-- 157 (252)
T 4hxt_A 82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIAS-- 157 (252)
T ss_dssp HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT--
T ss_pred HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHc--
Confidence 99999999999999999999999999999999999999999999999999999999986 56799999999999985
Q ss_pred hccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHH
Q 015951 287 LENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERL 353 (397)
Q Consensus 287 l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~L 353 (397)
.++.....+.+.|+++.|+.+|.++++.+++.|+.+|.+|+...+..++.+.+.+++..++..+
T Consensus 158 ---~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll 221 (252)
T 4hxt_A 158 ---GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLL 221 (252)
T ss_dssp ---SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGG
T ss_pred ---CCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 2455567888999999999999999999999999999999987777777777666666666644
No 3
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.89 E-value=4.6e-22 Score=180.14 Aligned_cols=193 Identities=18% Similarity=0.256 Sum_probs=175.3
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHhcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951 130 IAIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVL 208 (397)
Q Consensus 130 ~~i~~L~~~~~s~e~k~~AL~~L~~Lv-e~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl 208 (397)
.+...+.++ +++.+..|+..|.++. .+.++...+.+.|+++.|+++|+++++++|..|+++|++++.+++..+..++
T Consensus 16 ~l~~LL~s~--~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~ 93 (210)
T 4db6_A 16 QMVQQLNSP--DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 93 (210)
T ss_dssp HHHHHTTCS--CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 344555443 5788899999999998 5567788899999999999999999999999999999999999999999999
Q ss_pred HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc
Q 015951 209 ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE 288 (397)
Q Consensus 209 ~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~ 288 (397)
+.|++|.|+.+|++++..++..|+++|++++.+++.....+++.|+++.|+.++.++ +..++..|+++|.+|+.
T Consensus 94 ~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~---- 167 (210)
T 4db6_A 94 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS---- 167 (210)
T ss_dssp HTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHHT----
T ss_pred HCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHHc----
Confidence 999999999999999999999999999999999999888999999999999999986 66899999999999996
Q ss_pred cCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951 289 NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 289 ~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 331 (397)
.++..+..+.+.|+++.|+.++.++++++++.|+.+|.+|+.
T Consensus 168 -~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 168 -GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp -SCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred -CCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 246677888999999999999999999999999999999975
No 4
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.89 E-value=5.7e-22 Score=184.15 Aligned_cols=213 Identities=17% Similarity=0.232 Sum_probs=183.3
Q ss_pred HHhhCCCCCHHHHHHHHHHHHhcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcC
Q 015951 133 DDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELG 211 (397)
Q Consensus 133 ~~L~~~~~s~e~k~~AL~~L~~Lv-e~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g 211 (397)
..|.++ +++.+..|+..|..++ .+.++...+.+.|+++.|+.+|+++++++|..|+++|++++.+++..+..+.+.|
T Consensus 19 ~~L~s~--~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g 96 (252)
T 4db8_A 19 QQLNSD--DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAG 96 (252)
T ss_dssp HHHHSS--CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHcCC--CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence 344444 3457778888885544 3455667899999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCC
Q 015951 212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMH 291 (397)
Q Consensus 212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~ 291 (397)
++|.|+++++++++.++..|+++|+++..+.+.....+.+.||++.|+.+|.++ +..++..|+++|++|+. .+
T Consensus 97 ~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~-----~~ 169 (252)
T 4db8_A 97 ALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS-----GG 169 (252)
T ss_dssp HHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTT-----SC
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHc-----CC
Confidence 999999999999999999999999999988777668899999999999999986 66799999999999995 24
Q ss_pred CCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHH
Q 015951 292 KVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 354 (397)
Q Consensus 292 ~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr 354 (397)
+.....+.+.|+++.|+.+|.++++.+++.|+.+|.+|+..++..+..+.+.++++.++..++
T Consensus 170 ~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~ 232 (252)
T 4db8_A 170 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS 232 (252)
T ss_dssp HHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTT
T ss_pred hHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhC
Confidence 566677889999999999999999999999999999999877777777776666666666543
No 5
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.89 E-value=7.8e-22 Score=186.06 Aligned_cols=198 Identities=14% Similarity=0.153 Sum_probs=173.1
Q ss_pred CHHHHHHhcCCCCH--HHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHH
Q 015951 170 GLSVLVGQLNHPDT--DIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQE 247 (397)
Q Consensus 170 Gl~~Li~lL~s~~~--~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~ 247 (397)
.+|+++++|.++++ +++..|+++|.+++.+|+..+..+.+.|+||+|+++|++++++++..|+|||.+|..+++.+..
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 58999999999888 9999999999999999999999999999999999999999999999999999999998999999
Q ss_pred HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc---------------
Q 015951 248 MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA--------------- 312 (397)
Q Consensus 248 ~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~--------------- 312 (397)
.+.++||++.|+++|.+. .+..++..|+.+|++|+. .+..+..+.+. .++.|++++.
T Consensus 89 ~I~~~GaI~~Lv~lL~~~-~~~~~~e~a~~aL~nLS~------~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~ 160 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQT-RDLETKKQITGLLWNLSS------NDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN 160 (233)
T ss_dssp HHHHTTHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHT------SGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred HHHHcCCHHHHHHHHccC-CCHHHHHHHHHHHHHHHc------ChhhHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence 999999999999999842 156799999999999985 45667777765 5888888652
Q ss_pred -CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh-HHHHHHHHHHhHHhhhhhhhhhhHHhHHHHH
Q 015951 313 -SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQEVMLEEDQRDYAMDVEALR 377 (397)
Q Consensus 313 -~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~~~~l~~~e~~~~~~~~l~~~~ 377 (397)
..+++++++|..+|++|++..++.|+.+++++|+ ++++..+|....+...+++..|+| +.+||
T Consensus 161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~--v~~L~ 225 (233)
T 3tt9_A 161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENC--VCILH 225 (233)
T ss_dssp TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHH--HHHHH
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHH--HHHHH
Confidence 1377999999999999999877799999988786 899999998777666678888988 55565
No 6
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=99.87 E-value=3.9e-21 Score=173.97 Aligned_cols=181 Identities=18% Similarity=0.180 Sum_probs=161.9
Q ss_pred HhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc
Q 015951 166 SKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG 245 (397)
Q Consensus 166 ~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~ 245 (397)
..-|+.++|+.+|+++++++|..|+++|++++.+++..+..+++.|++|.|+++|.++++.++..|+++|++++.+++..
T Consensus 9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~ 88 (210)
T 4db6_A 9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ 88 (210)
T ss_dssp ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence 34588999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHH
Q 015951 246 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 325 (397)
Q Consensus 246 ~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~a 325 (397)
...+++.||++.|+.+|.++ +..++..|+++|++|+. .++.....+.+.|+++.|+.+|.++++.+++.|+.+
T Consensus 89 ~~~i~~~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~-----~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~a 161 (210)
T 4db6_A 89 IQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS-----GGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWA 161 (210)
T ss_dssp HHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTT-----SCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHc-----CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999987 67799999999999995 245566778899999999999999999999999999
Q ss_pred HHHHhcCChHHHHHHHhcCChHHHHHHH
Q 015951 326 IKNLLQLRTTEALVLKDFCGLDTALERL 353 (397)
Q Consensus 326 L~~L~~~~~~~r~~~~~~~gL~~~L~~L 353 (397)
|.+|+..++..+..+.+.++++.++..+
T Consensus 162 L~~l~~~~~~~~~~~~~~g~i~~L~~ll 189 (210)
T 4db6_A 162 LSNIASGGNEQKQAVKEAGALEKLEQLQ 189 (210)
T ss_dssp HHHHHTSCHHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHcCCcHHHHHHHHCCCHHHHHHHH
Confidence 9999998777777787666666666644
No 7
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=99.86 E-value=1e-20 Score=175.68 Aligned_cols=196 Identities=17% Similarity=0.222 Sum_probs=177.7
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 127 LIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
.+..+++.+.+++ ++.+..|+..|.+++. +.++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus 55 ~i~~L~~lL~~~~--~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 132 (252)
T 4db8_A 55 ALPALVQLLSSPN--EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132 (252)
T ss_dssp HHHHHHHGGGCSC--HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred cHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHH
Confidence 4567788887764 7889999999999997 567888999999999999999999999999999999999998887669
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
.+.+.|++|.|++++.+++..++..|+++|++++.+++.....+.+.|+++.|+.++.++ +..++..|+++|++|+.
T Consensus 133 ~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~- 209 (252)
T 4db8_A 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIAS- 209 (252)
T ss_dssp HHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTT-
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhc-
Confidence 999999999999999999999999999999999999988889999999999999999986 67799999999999985
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951 286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 331 (397)
.++..+..+.+.|+++.++.++.++++++++.|+.+|.+|+.
T Consensus 210 ----~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 210 ----GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp ----SCHHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred ----CCHHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 355677788999999999999999999999999999999874
No 8
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=99.86 E-value=2.6e-20 Score=171.46 Aligned_cols=199 Identities=17% Similarity=0.207 Sum_probs=181.7
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
.+..+++.+.++ +.+.+..|+..|..+... .++...+.+.|+++.|+.+|+++++++|..|+++|++++..++..+.
T Consensus 45 ~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 122 (252)
T 4hxt_A 45 GVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 122 (252)
T ss_dssp HHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 466677778765 478899999999999987 67888899999999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
.+.+.|++|.|++++.++++.++..|+++|++++.+++.....+.+.|+++.|+.++.++ +..++..|+++|.+|+.
T Consensus 123 ~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~- 199 (252)
T 4hxt_A 123 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIAS- 199 (252)
T ss_dssp HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTT-
T ss_pred HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHc-
Confidence 999999999999999999999999999999999999888888999999999999999976 56799999999999995
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951 286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 334 (397)
.++.....+.+.|+++.++.++.++++++++.|+.+|.+|....+
T Consensus 200 ----~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 200 ----GPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp ----SBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred ----CCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 255677788999999999999999999999999999999998754
No 9
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.86 E-value=9.2e-20 Score=188.87 Aligned_cols=221 Identities=16% Similarity=0.193 Sum_probs=187.8
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCc--hhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN--ANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQ 204 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDn--A~~~~~lGGl~~Li~lL~-s~~~~ir~~Aa~vLg~~aqNNp~~Q 204 (397)
+.++++.+.+. +++.+..|...+..++..-+| -+.+++.|++|+|+++|+ ++++++|..|+|+|+++|..++..+
T Consensus 59 i~~~v~~l~s~--d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~ 136 (510)
T 3ul1_B 59 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 136 (510)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 56677777655 578889999999988755444 478999999999999996 4669999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCc---cHHHHHHHHHHHHH
Q 015951 205 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF---EIRLHRKAVSLVGD 281 (397)
Q Consensus 205 ~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~---d~klr~kA~~lL~~ 281 (397)
..+++.|++|.|+++|.+++..++..|+|||++|+.+++..+..+.+.||++.|+.++.++.. ...+++.++|++++
T Consensus 137 ~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 216 (510)
T 3ul1_B 137 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 216 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986532 24578899999999
Q ss_pred HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951 282 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 282 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 355 (397)
++.+ ...........|+++.|+.+|.+++.+++..|+.+|.+|+.......+.+...+++..++..|++
T Consensus 217 l~~~-----~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 285 (510)
T 3ul1_B 217 LCRN-----KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 285 (510)
T ss_dssp HHCC-----CSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred Hhhc-----ccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC
Confidence 9963 22333344456899999999999999999999999999999887666667766777777776654
No 10
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.86 E-value=1.5e-20 Score=187.43 Aligned_cols=213 Identities=16% Similarity=0.163 Sum_probs=180.6
Q ss_pred CHHHHHHHHHHHHhccCCCC-chhHHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHHcCcHHHHH
Q 015951 141 SLEDSQRALQELLILVEPID-NANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLM 217 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iD-nA~~~~~lGG-l~~Li~lL~s~~~~ir~~Aa~vLg~~aqN-Np~~Q~~vl~~g~lp~Ll 217 (397)
+++-+..|...|.+++..-+ +...+...|| +|+|+.+|.++++++|..|+|+|++++.+ |+..+..+.+.|++|.|+
T Consensus 97 ~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv 176 (354)
T 3nmw_A 97 SITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALM 176 (354)
T ss_dssp HHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHH
Confidence 35678889999999987655 5555667777 99999999999999999999999999986 788999999999999999
Q ss_pred Hhh-cCCCHHHHHHHHHHHHHHhcCChhcHHHHH-hcCcHHHHHHhhcCCCcc--HHHHHHHHHHHHHHhhchhccCCCC
Q 015951 218 KMV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKV 293 (397)
Q Consensus 218 ~LL-~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~-~~gGi~~L~~lL~s~~~d--~klr~kA~~lL~~L~~~~l~~~~~~ 293 (397)
++| ++.+.+++..|+.||.++..+++.++..+. ..||++.|+.+|.+++.. ..++..|+++|++|+... ..+++
T Consensus 177 ~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~ 254 (354)
T 3nmw_A 177 ECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNED 254 (354)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHH--TTCHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhc--cCCHH
Confidence 974 666788999999999999987777788887 789999999999876322 258999999999998410 02556
Q ss_pred cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951 294 EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 294 ~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 355 (397)
.+..+.+.|.++.|+.+|.+++..+++.|+.+|.+|+..++..++.+.+.|++++++..|++
T Consensus 255 ~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s 316 (354)
T 3nmw_A 255 HRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 316 (354)
T ss_dssp HHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTC
T ss_pred HHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 78889999999999999999999999999999999997667788888878888888876644
No 11
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.84 E-value=7.3e-20 Score=188.33 Aligned_cols=212 Identities=16% Similarity=0.160 Sum_probs=179.1
Q ss_pred HHHHHHHHHHHHhccCCCC-chhHHHhcCC-HHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHHHHHHHHcCcHHHHHH
Q 015951 142 LEDSQRALQELLILVEPID-NANDLSKLGG-LSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQKQVLELGALSKLMK 218 (397)
Q Consensus 142 ~e~k~~AL~~L~~Lve~iD-nA~~~~~lGG-l~~Li~lL~s~~~~ir~~Aa~vLg~~aqN-Np~~Q~~vl~~g~lp~Ll~ 218 (397)
++-+..|...|.+++..-+ +...+...|| +|+|+.+|.+++++++..|+|+|++++.+ ++..+..+.+.|++|.|++
T Consensus 214 ~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~ 293 (458)
T 3nmz_A 214 ITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 293 (458)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHH
Confidence 4567889999999887665 4445556777 99999999999999999999999999985 7889999999999999999
Q ss_pred hh-cCCCHHHHHHHHHHHHHHhcCChhcHHHHH-hcCcHHHHHHhhcCCCcc--HHHHHHHHHHHHHHhhchhccCCCCc
Q 015951 219 MV-KSSFVEEAVKALYTVSSLIRNNLAGQEMFY-VEAGDLMLQDILGNSSFE--IRLHRKAVSLVGDLAKCQLENMHKVE 294 (397)
Q Consensus 219 LL-~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~-~~gGi~~L~~lL~s~~~d--~klr~kA~~lL~~L~~~~l~~~~~~~ 294 (397)
+| .+++..++..|+.||.+|..+++.++..+. ..||++.|+.+|.+++.. ..++..|+++|++|+... ..+++.
T Consensus 294 lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~--a~~~~~ 371 (458)
T 3nmz_A 294 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLI--ATNEDH 371 (458)
T ss_dssp HHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHH--TTCHHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcc--cCCHHH
Confidence 75 556788899999999999887777788887 789999999999976322 248999999999998410 025667
Q ss_pred chhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951 295 PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 295 ~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 355 (397)
+..+.+.|.++.|+.+|++++.++++.|+.+|.+|+...+..+..+.+.|+++++++.|++
T Consensus 372 ~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s 432 (458)
T 3nmz_A 372 RQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHS 432 (458)
T ss_dssp HHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTC
T ss_pred HHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhC
Confidence 8889999999999999999999999999999999997667788888878888888886643
No 12
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.84 E-value=5.9e-19 Score=183.29 Aligned_cols=221 Identities=16% Similarity=0.187 Sum_probs=186.8
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCC--chhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcCChHHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPID--NANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQNNPLVQ 204 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD--nA~~~~~lGGl~~Li~lL~-s~~~~ir~~Aa~vLg~~aqNNp~~Q 204 (397)
+.++++.+.+. +++.+..|+..+..++..-. .-..+++.|++|+|+.+|. ++++.+|..|+|+|++++.+++..+
T Consensus 78 l~~lv~~l~s~--d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~ 155 (529)
T 3tpo_A 78 VEDIVKGINSN--NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT 155 (529)
T ss_dssp HHHHHHHHTSS--CHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHhcCC--CHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 45566666554 57888899999988775433 3578999999999999995 5679999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCc---cHHHHHHHHHHHHH
Q 015951 205 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF---EIRLHRKAVSLVGD 281 (397)
Q Consensus 205 ~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~---d~klr~kA~~lL~~ 281 (397)
..+++.|++|.|+.++.+++..++..|+|||++|+.+++..+..++++||++.|+.+|.++.. ...+++.++|++++
T Consensus 156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n 235 (529)
T 3tpo_A 156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN 235 (529)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986532 34578899999999
Q ss_pred HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951 282 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 282 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 355 (397)
++.+ ...........|+++.|+.+|.+++++++..|+.+|.+|+.......+.+...+++..++..|++
T Consensus 236 l~~~-----~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~ 304 (529)
T 3tpo_A 236 LCRN-----KNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA 304 (529)
T ss_dssp HHCC-----CTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred HHhc-----ccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcC
Confidence 9963 22333444456899999999999999999999999999999887777777767777777776654
No 13
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.83 E-value=2.2e-19 Score=183.82 Aligned_cols=175 Identities=13% Similarity=0.116 Sum_probs=146.0
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCch-hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA-NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 206 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA-~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~ 206 (397)
+..++..|.++ +++.+..|+..|..++..-++. ..+.+.||+|+|+++|++++++++..|+|+|++++..|+..+..
T Consensus 4 l~~lv~~L~s~--~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 4 IPKAVQYLSSQ--DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp HHHHHHHHHSS--CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 44566777766 4578899999999988665554 48999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc--------CCC------ccHHH
Q 015951 207 VLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG--------NSS------FEIRL 271 (397)
Q Consensus 207 vl~~g~lp~Ll~LL~-s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~--------s~~------~d~kl 271 (397)
+.+.|++|.|+++|. +++.+++..|+|||+++..+ +..+..+++ ||++.|+.+|. ++. .+..+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v 159 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEV 159 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHH
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHH
Confidence 999999999999999 77889999999999999988 778888888 99999999993 221 24567
Q ss_pred HHHHHHHHHHHhhchhccCCCCcchhHHhC-CcHHHHHHhcc
Q 015951 272 HRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTA 312 (397)
Q Consensus 272 r~kA~~lL~~L~~~~l~~~~~~~~~~l~~~-g~v~~Lv~lL~ 312 (397)
.+.|+|+|++|+. +++.+..+.+. |+++.|+.+|.
T Consensus 160 ~~~a~~aL~nLs~------~~~~~~~i~~~~g~i~~Lv~lL~ 195 (457)
T 1xm9_A 160 FFNATGCLRNLSS------ADAGRQTMRNYSGLIDSLMAYVQ 195 (457)
T ss_dssp HHHHHHHHHHHTT------SHHHHHHHTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc------CHHHHHHHHHcCCCHHHHHHHHH
Confidence 7899999999996 24556666665 77776665554
No 14
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=99.83 E-value=4.8e-20 Score=183.76 Aligned_cols=207 Identities=13% Similarity=0.095 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhcCChHHHHHHHHc
Q 015951 142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH-----------PDTDIRKISAWILGKASQNNPLVQKQVLEL 210 (397)
Q Consensus 142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s-----------~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~ 210 (397)
.+.+..|+..|.++.-+.+|.+.++..||+++|+.+|.+ .++++|..|+|+|.+++.+++..+..+...
T Consensus 46 ~~~~~~A~~aL~nls~d~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~ 125 (354)
T 3nmw_A 46 EHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125 (354)
T ss_dssp GGTHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 356677888888888888899999999999999999942 357899999999999999998888888765
Q ss_pred C-cHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-ChhcHHHHHhcCcHHHHHHhh-cCCCccHHHHHHHHHHHHHHhhchh
Q 015951 211 G-ALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAGQEMFYVEAGDLMLQDIL-GNSSFEIRLHRKAVSLVGDLAKCQL 287 (397)
Q Consensus 211 g-~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~-~~~~~~~f~~~gGi~~L~~lL-~s~~~d~klr~kA~~lL~~L~~~~l 287 (397)
+ +||.|+++|++++++++..|++||+++..+ ++.++..+.+.||++.|+++| .++ +..++..|+.+|++|+..
T Consensus 126 ~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~--~~~~~~~A~~aL~nLs~~-- 201 (354)
T 3nmw_A 126 KGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK--KESTLKSVLSALWNLSAH-- 201 (354)
T ss_dssp HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTT--
T ss_pred CCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC--CHHHHHHHHHHHHHHHcc--
Confidence 4 599999999999999999999999999985 677889999999999999985 444 556899999999999851
Q ss_pred ccCCCCcchhHH-hCCcHHHHHHhccCCCh----HHHHHHHHHHHHHhc---CChHHHHHHHhcCChHHHHHHHHH
Q 015951 288 ENMHKVEPPLFR-DRFFLKSVVDLTASADL----DLQEKALAAIKNLLQ---LRTTEALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 288 ~~~~~~~~~~l~-~~g~v~~Lv~lL~~~d~----dv~E~aL~aL~~L~~---~~~~~r~~~~~~~gL~~~L~~Lr~ 355 (397)
.++.+..+. ..|.++.|+.+|.+++. ++++.|+.+|.+|+. ..+..++.+.+.+++.+++..|++
T Consensus 202 ---~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~ 274 (354)
T 3nmw_A 202 ---CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274 (354)
T ss_dssp ---CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred ---ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence 334556666 79999999999987654 599999999999997 456688889888888999988864
No 15
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.82 E-value=6.6e-19 Score=185.82 Aligned_cols=196 Identities=13% Similarity=0.116 Sum_probs=170.0
Q ss_pred hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC-Chhc
Q 015951 167 KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRN-NLAG 245 (397)
Q Consensus 167 ~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~-~~~~ 245 (397)
..+++++||.+|.++++++|..|+++|.+++.+++..+..+.+.|+||.|+++|++++..++..|++||.+|+.+ ++.+
T Consensus 46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~n 125 (584)
T 3l6x_A 46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDN 125 (584)
T ss_dssp CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHH
T ss_pred ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHH
Confidence 357999999999999999999999999999999999999999999999999999999999999999999999986 6899
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc-------------
Q 015951 246 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA------------- 312 (397)
Q Consensus 246 ~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~------------- 312 (397)
+..++++||++.|+.+|.+.. +..++..|+++|++|+. ++..+..+.+ +.++.|+.+|.
T Consensus 126 k~~I~~~GaIp~LV~LL~s~~-~~~~~e~aa~aL~nLS~------~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~ 197 (584)
T 3l6x_A 126 KIAIKNCDGVPALVRLLRKAR-DMDLTEVITGTLWNLSS------HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNED 197 (584)
T ss_dssp HHHHHHTTHHHHHHHHHHHCC-SHHHHHHHHHHHHHHTT------SGGGHHHHHH-HTHHHHHHHTHHHHHCCC------
T ss_pred HHHHHHcCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHhC------CchhhHHHHh-ccHHHHHHHHhccccccccccccc
Confidence 999999999999999999642 55689999999999985 4567777776 45999999871
Q ss_pred -----CCChHHHHHHHHHHHHHhcCChHHHHHHHhcCCh-HHHHHHHHHHhHHhhhhhhhhhhH
Q 015951 313 -----SADLDLQEKALAAIKNLLQLRTTEALVLKDFCGL-DTALERLRQQLQEVMLEEDQRDYA 370 (397)
Q Consensus 313 -----~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL-~~~L~~Lr~~~~~l~~~e~~~~~~ 370 (397)
..+.+++++|..+|.+|+..++..|+.+++++|+ ++++..|+........+++..++|
T Consensus 198 ~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~ena 261 (584)
T 3l6x_A 198 CKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENC 261 (584)
T ss_dssp ----CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHH
Confidence 2368999999999999999988789999988887 688888887654444455566666
No 16
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=99.82 E-value=9.8e-19 Score=181.64 Aligned_cols=216 Identities=15% Similarity=0.184 Sum_probs=184.1
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHhccCCCC-chhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 015951 131 AIDDLNNSTLSLEDSQRALQELLILVEPID-NANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE 209 (397)
Q Consensus 131 ~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD-nA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~ 209 (397)
++..+.++ +++.+..|+..|.+++...+ +...+...|+++.|+.+|.++++.++..|+++|++++.+++..+..+++
T Consensus 256 L~~LL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~ 333 (529)
T 3tpo_A 256 LVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID 333 (529)
T ss_dssp HHHHTTSS--CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHhcCC--cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh
Confidence 34444443 56788899999999997664 4456778899999999999999999999999999999999999999999
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015951 210 LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 289 (397)
Q Consensus 210 ~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~ 289 (397)
.|+++.|+.++.++++.++..|+|+|++++.+++.....+++.|+++.|+.+|.++ +.++|..|+|+|++|+..
T Consensus 334 ~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~A~~aL~nl~~~---- 407 (529)
T 3tpo_A 334 AGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKAAAWAITNYTSG---- 407 (529)
T ss_dssp TTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC--CHHHHHHHHHHHHHHHcC----
Confidence 99999999999999999999999999999999999999999999999999999987 667999999999999873
Q ss_pred CCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh------HHHHHHHhcCChHHHHHHHHH
Q 015951 290 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT------TEALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 290 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~------~~r~~~~~~~gL~~~L~~Lr~ 355 (397)
.+++....+.+.|+++.|+++|.+.|++++..++.+|.++....+ ..+..+.++||++. |+.|+.
T Consensus 408 ~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~-ie~Lq~ 478 (529)
T 3tpo_A 408 GTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK-IEALQR 478 (529)
T ss_dssp SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHH-HTGGGG
T ss_pred CCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHH-HHHHHc
Confidence 355667789999999999999999999999999999999985321 23345665666644 455543
No 17
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=99.82 E-value=3.7e-19 Score=182.16 Aligned_cols=191 Identities=13% Similarity=0.171 Sum_probs=165.0
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951 170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 249 (397)
Q Consensus 170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f 249 (397)
.+|.|+.+|+++++++|..|+++|++++.+++.++..+.+.|++|.|+++|+++++.++..|++||.+|..+++.+...+
T Consensus 3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~i 82 (457)
T 1xm9_A 3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82 (457)
T ss_dssp CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 58999999999999999999999999999999899999999999999999999999999999999999999989999999
Q ss_pred HhcCcHHHHHHhhc-CCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc--------cC-------
Q 015951 250 YVEAGDLMLQDILG-NSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT--------AS------- 313 (397)
Q Consensus 250 ~~~gGi~~L~~lL~-s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL--------~~------- 313 (397)
+++||++.|+++|. ++ +..++..|+|+|++|+. ++..+..+.+ |.++.|+.+| .+
T Consensus 83 ~~~G~i~~Lv~lL~~~~--~~~~~~~a~~aL~nLa~------~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e 153 (457)
T 1xm9_A 83 RRQNGIREAVSLLRRTG--NAEIQKQLTGLLWNLSS------TDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSRE 153 (457)
T ss_dssp HHTTCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHT------SSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------
T ss_pred HHcCCHHHHHHHHhhCC--CHHHHHHHHHHHHHHhc------CHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcc
Confidence 99999999999998 65 56799999999999995 4678888888 9999999999 32
Q ss_pred -CChHHHHHHHHHHHHHhcCChHHHHHHHhc-CChHHHHHHHHHHhHHhhhhhhhhhhH
Q 015951 314 -ADLDLQEKALAAIKNLLQLRTTEALVLKDF-CGLDTALERLRQQLQEVMLEEDQRDYA 370 (397)
Q Consensus 314 -~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~-~gL~~~L~~Lr~~~~~l~~~e~~~~~~ 370 (397)
.+++++..|+.+|.+|+.. +..++.+.+. |++++++..|+........+.+..++|
T Consensus 154 ~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a 211 (457)
T 1xm9_A 154 VVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENC 211 (457)
T ss_dssp CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHH
T ss_pred cccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHH
Confidence 2456777999999999998 6688889876 778888888887644333333344444
No 18
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.81 E-value=5.5e-18 Score=174.56 Aligned_cols=221 Identities=15% Similarity=0.171 Sum_probs=189.2
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC--CchhHHHhcCCHHHHHHhcCCCC-HHHHHHHHHHHHHHhcCChHH
Q 015951 127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHPD-TDIRKISAWILGKASQNNPLV 203 (397)
Q Consensus 127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i--DnA~~~~~lGGl~~Li~lL~s~~-~~ir~~Aa~vLg~~aqNNp~~ 203 (397)
.+..+++.|.++ +++.+..|+..|..++... ++...++..|++|.|+.+|.+++ +.+|..|+|+|++++..++..
T Consensus 75 ~l~~lv~~L~s~--~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~ 152 (528)
T 4b8j_A 75 SLPAMIGGVYSD--DNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSEN 152 (528)
T ss_dssp CHHHHHHHHTSS--CHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHH
Confidence 366677777654 5788999999998886543 56788999999999999998876 999999999999999999999
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHh
Q 015951 204 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLA 283 (397)
Q Consensus 204 Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~ 283 (397)
+..+++.|++|.|+.+|.++++.++..|+++|++++.+++.....+...|+++.|+.+|.+. .+..++..|+|+|++|+
T Consensus 153 ~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~v~~~a~~~L~~L~ 231 (528)
T 4b8j_A 153 TKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEH-TKLSMLRNATWTLSNFC 231 (528)
T ss_dssp HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTT-CCHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcC-CCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999899999999999999999543 36779999999999999
Q ss_pred hchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHH
Q 015951 284 KCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQ 356 (397)
Q Consensus 284 ~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~ 356 (397)
.. . .........|+++.|+.+|.+++..++..++.+|.+|+...+...+.+.+.+++..++..|+..
T Consensus 232 ~~-----~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~ 298 (528)
T 4b8j_A 232 RG-----K-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHP 298 (528)
T ss_dssp CS-----S-SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCS
T ss_pred cC-----C-CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCC
Confidence 63 2 2233445689999999999999999999999999999988766555666577778877766543
No 19
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=99.81 E-value=1e-18 Score=179.95 Aligned_cols=217 Identities=16% Similarity=0.177 Sum_probs=185.4
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCch-hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA-NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 206 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA-~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~ 206 (397)
+..++..+.+. +++.+..|+..|.+++...++. ..+...|+++.|+.+|.++++.++..|+++|++++.+++..++.
T Consensus 246 l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 323 (528)
T 4b8j_A 246 LPALARLIHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQC 323 (528)
T ss_dssp HHHHHHHTTCC--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHH
Confidence 34455555443 5678889999999999776543 57788899999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 207 VLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 207 vl~~g~lp~Ll~LL~s~-~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
+++.|++|.|+.+|.++ +..++..|+|+|++++.+++.....+++.|+++.|+.+|.++ +..++..|+++|++|+..
T Consensus 324 ~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~aL~nl~~~ 401 (528)
T 4b8j_A 324 IIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA--EFDIKKEAAWAISNATSG 401 (528)
T ss_dssp HHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcC
Confidence 99999999999999998 889999999999999998888888999999999999999976 668999999999999973
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChH-----------HHHHHHhcCChHHHHHHH
Q 015951 286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTT-----------EALVLKDFCGLDTALERL 353 (397)
Q Consensus 286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~-----------~r~~~~~~~gL~~~L~~L 353 (397)
.++.....+.+.|+++.|+.+|..+|+.++..++.+|.+|+...+. ....+.+.+|++.+ ..|
T Consensus 402 ----~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l-~~L 475 (528)
T 4b8j_A 402 ----GSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEKI-ENL 475 (528)
T ss_dssp ----SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHHH-HHG
T ss_pred ----CCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHHH-HHH
Confidence 3566778888999999999999999999999999999999976543 34556655555544 334
No 20
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=99.81 E-value=1.1e-18 Score=180.75 Aligned_cols=208 Identities=14% Similarity=0.179 Sum_probs=180.2
Q ss_pred CHHHHHHHHHHHHhccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHh
Q 015951 141 SLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 219 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iDn-A~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~L 219 (397)
+++.+..|+..|.+++...++ ...+...|+++.|+.+|.++++.++..|+++|++++..++..+..+++.|++|.|+.+
T Consensus 245 ~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~L 324 (510)
T 3ul1_B 245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSL 324 (510)
T ss_dssp CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-C
T ss_pred CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHH
Confidence 567888999999999976654 4567788999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015951 220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 299 (397)
Q Consensus 220 L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~ 299 (397)
+.+++..++..|+|+|++++.+++.....+++.|+++.|+.++.++ +.++|..|+|+|++++.. .+++....+.
T Consensus 325 L~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~Aa~aL~Nl~~~----~~~~~~~~L~ 398 (510)
T 3ul1_B 325 LTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA--DFKTQKEAAWAITNYTSG----GTVEQIVYLV 398 (510)
T ss_dssp TTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----CCHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcc----CCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999987 678999999999999973 3556677899
Q ss_pred hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh------HHHHHHHhcCChHHHHHHHHH
Q 015951 300 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT------TEALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 300 ~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~------~~r~~~~~~~gL~~~L~~Lr~ 355 (397)
+.|+++.|+++|.+.|++++..++.+|.++....+ ..+..|.++||+ ..|+.|+.
T Consensus 399 ~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl-~~ie~Lq~ 459 (510)
T 3ul1_B 399 HCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGL-DKIEALQR 459 (510)
T ss_dssp HTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHH-HHHHHGGG
T ss_pred HCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcH-HHHHHHHc
Confidence 99999999999999999999999999999986422 233456645555 45566644
No 21
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=99.79 E-value=9.7e-19 Score=164.89 Aligned_cols=197 Identities=13% Similarity=0.141 Sum_probs=163.3
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 206 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lv-e~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~ 206 (397)
+..+++.|.+++...+.+..|...|..++ ++.++...+...||+|+|+++|.++++++|..|+|+|++++..|+..+..
T Consensus 10 i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~~ 89 (233)
T 3tt9_A 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLE 89 (233)
T ss_dssp HHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 45567778777655567778888888877 46678889999999999999999999999999999999999999999999
Q ss_pred HHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc---C-----------CCccHHH
Q 015951 207 VLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG---N-----------SSFEIRL 271 (397)
Q Consensus 207 vl~~g~lp~Ll~LL~-s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~---s-----------~~~d~kl 271 (397)
+.+.|+||+|+++|. +.+.+++..|..||.+|.. ++.+...+.+ +|++.|+.++. + ...+..+
T Consensus 90 I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~-~~~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v 167 (233)
T 3tt9_A 90 VAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSS-NDKLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGLLDFDI 167 (233)
T ss_dssp HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT-SGGGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred HHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHc-ChhhHHHHHh-ccHHHHHHHHhccccCCcccccccccccchHHH
Confidence 999999999999998 4678888888888888764 4566666665 58999998763 1 1135689
Q ss_pred HHHHHHHHHHHhhchhccCCCCcchhHHhC-CcHHHHHHhccC------CChHHHHHHHHHHHHHhc
Q 015951 272 HRKAVSLVGDLAKCQLENMHKVEPPLFRDR-FFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 272 r~kA~~lL~~L~~~~l~~~~~~~~~~l~~~-g~v~~Lv~lL~~------~d~dv~E~aL~aL~~L~~ 331 (397)
+.+|+.+|.+|+. .+++.+..+.+. |+|+.|+.+++. .+...+|.++.+|.+|+.
T Consensus 168 ~~na~~~L~nLss-----~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~ 229 (233)
T 3tt9_A 168 FYNVTGCLRNMSS-----AGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY 229 (233)
T ss_dssp HHHHHHHHHHHTT-----SCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhc-----CCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence 9999999999985 355788888875 789999999875 266899999999999974
No 22
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.79 E-value=2.2e-17 Score=170.57 Aligned_cols=218 Identities=15% Similarity=0.144 Sum_probs=186.9
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC--CchhHHHhcCCHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCChHHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPI--DNANDLSKLGGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLVQ 204 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i--DnA~~~~~lGGl~~Li~lL~s~-~~~ir~~Aa~vLg~~aqNNp~~Q 204 (397)
+..+++.|.++ +++.+..|+..|..++... .+...+...|++|.|+.+|.++ ++.+|..|+|+|++++..++..+
T Consensus 89 i~~lv~~L~s~--~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~ 166 (530)
T 1wa5_B 89 LPQMTQQLNSD--DMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT 166 (530)
T ss_dssp HHHHHHHHSCS--SHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHH
Confidence 55566677654 5788999999999987643 4456788899999999999987 89999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 205 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 205 ~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
..+++.|++|.|+.+|.+++..++..|+++|++++.+++.....+...|+++.|+.++.++ +..++..|+++|++|+.
T Consensus 167 ~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~v~~~a~~~L~~L~~ 244 (530)
T 1wa5_B 167 KVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN--KPSLIRTATWTLSNLCR 244 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC--CHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC--CHHHHHHHHHHHHHHhC
Confidence 9999999999999999998999999999999999999888899999999999999999985 66799999999999996
Q ss_pred chhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHH
Q 015951 285 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 354 (397)
Q Consensus 285 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr 354 (397)
. ...........++++.|+.+|.++++.++..++.+|.+|+...+...+.+.+.+++..++..|+
T Consensus 245 ~-----~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~ 309 (530)
T 1wa5_B 245 G-----KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS 309 (530)
T ss_dssp C-----SSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred C-----CCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHC
Confidence 3 2133345566899999999999999999999999999999887655566665677777777664
No 23
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.79 E-value=6.9e-18 Score=168.46 Aligned_cols=200 Identities=19% Similarity=0.158 Sum_probs=174.2
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
.+..++..+.+. +++.+..++..|.+++... ++...+...|+++.|+.+|.++++.+|..|+++|++++.+++...+
T Consensus 193 ~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 270 (450)
T 2jdq_A 193 CLNVLSWLLFVS--DTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQ 270 (450)
T ss_dssp GHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHHHHHHccC--CHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHH
Confidence 344455555543 4677888999999998754 5667788889999999999999999999999999999999998888
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
.+++.|++|.|++++.+++..++..|+++|++++.+++...+.+++.|+++.|+.+|.++ +.++|..|+++|++|+..
T Consensus 271 ~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~ 348 (450)
T 2jdq_A 271 VILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA--EFRTRKEAAWAITNATSG 348 (450)
T ss_dssp HHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS--CHHHHHHHHHHHHHHHHH
T ss_pred HHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC--CHHHHHHHHHHHHHHHcC
Confidence 899999999999999998899999999999999999888888899999999999999976 567999999999999863
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951 286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 334 (397)
.++.....+.+.|+++.|+.++..++..+++.++.+|.+++...+
T Consensus 349 ----~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~ 393 (450)
T 2jdq_A 349 ----GSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGE 393 (450)
T ss_dssp ----CCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHH
T ss_pred ----CCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhch
Confidence 234556667788999999999999999999999999999997543
No 24
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=99.79 E-value=1.9e-18 Score=177.73 Aligned_cols=198 Identities=14% Similarity=0.071 Sum_probs=172.5
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCC--CCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCChHHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEP--IDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNPLVQ 204 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~--iDnA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp~~Q 204 (397)
+..++..|.++ +++.+..|...|.++... .+|...+...||+++|+++| .+++++++..|+.+|++++..++..+
T Consensus 245 Ip~LV~LL~s~--~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk 322 (458)
T 3nmz_A 245 MRALVAQLKSE--SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENK 322 (458)
T ss_dssp HHHHHHGGGCS--CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 45566677644 578889999999998764 45778889999999999975 67889999999999999998778888
Q ss_pred HHHH-HcCcHHHHHHhhcCCCH----HHHHHHHHHHHHHhc---CChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015951 205 KQVL-ELGALSKLMKMVKSSFV----EEAVKALYTVSSLIR---NNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 276 (397)
Q Consensus 205 ~~vl-~~g~lp~Ll~LL~s~~~----~v~~kAl~ALS~LiR---~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~ 276 (397)
..+. ..|++|.|+++|.+.++ +++..|+++|+++.. .++.+++.++++||++.|+.+|.++ +..++..|+
T Consensus 323 ~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~--~~~v~~~A~ 400 (458)
T 3nmz_A 323 ADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH--SLTIVSNAC 400 (458)
T ss_dssp HHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS--CHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC--ChHHHHHHH
Confidence 8888 78999999999997654 489999999999986 6888999999999999999999986 567999999
Q ss_pred HHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951 277 SLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 277 ~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 334 (397)
++|++|+. .+++.+..+.+.|+++.|+++|.+++..+++.|+.||.+|+...+
T Consensus 401 ~aL~nLa~-----~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 401 GTLWNLSA-----RNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHS-----SCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHc-----CCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999984 356788889999999999999999999999999999999998754
No 25
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.78 E-value=4.9e-18 Score=184.89 Aligned_cols=224 Identities=10% Similarity=0.018 Sum_probs=185.8
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHh-cCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh---
Q 015951 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSK-LGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP--- 201 (397)
Q Consensus 126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~-lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp--- 201 (397)
.+++.++..|.++..+.+.+..|.+.|.||..+.+....++. .|++|+|+.+|+++++.++..|+|+|++++...+
T Consensus 377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~q~ 456 (810)
T 3now_A 377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQE 456 (810)
T ss_dssp HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCCCC
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchhhh
Confidence 456777888887755668899999999999999999999886 6899999999999999999999999999998542
Q ss_pred --------------------------HHH---HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc
Q 015951 202 --------------------------LVQ---KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 252 (397)
Q Consensus 202 --------------------------~~Q---~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~ 252 (397)
.++ +.+++.|++|.|+++++++++.++..|+|||++++. ++.++..++++
T Consensus 457 ~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~ 535 (810)
T 3now_A 457 MLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQE 535 (810)
T ss_dssp CCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHT
T ss_pred hhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHC
Confidence 234 688999999999999999999999999999999985 56789999999
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc-hhHHhCCcHHHHHHhccCC-ChHHHHHHHHHHHHHh
Q 015951 253 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP-PLFRDRFFLKSVVDLTASA-DLDLQEKALAAIKNLL 330 (397)
Q Consensus 253 gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~-~~l~~~g~v~~Lv~lL~~~-d~dv~E~aL~aL~~L~ 330 (397)
||+++|+.+|.++ +...|+.|+|+|++|+.+ .++... ..-...|+++.|+.+|.++ +...+..|+.||.+|+
T Consensus 536 Gaip~Lv~LL~s~--~~~~k~~Aa~AL~nL~~~----~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa 609 (810)
T 3now_A 536 GGVKALLRMALEG--TEKGKRHATQALARIGIT----INPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA 609 (810)
T ss_dssp THHHHHHHHHHSS--CHHHHHHHHHHHHHHHHH----SCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHccC--CHHHHHHHHHHHHHHhcC----CChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh
Confidence 9999999999987 557899999999999863 222210 0001246899999999876 4345578999999999
Q ss_pred cCChHHHHHHHhcCChHHHHHHHHHH
Q 015951 331 QLRTTEALVLKDFCGLDTALERLRQQ 356 (397)
Q Consensus 331 ~~~~~~r~~~~~~~gL~~~L~~Lr~~ 356 (397)
..++..++.+.+.||++.++..|.+.
T Consensus 610 ~~~d~~~~~Ii~aG~l~~Lv~LL~s~ 635 (810)
T 3now_A 610 SMNESVRQRIIKEQGVSKIEYYLMED 635 (810)
T ss_dssp TSCHHHHHHHHHTTHHHHHHHHHHSC
T ss_pred cCCHHHHHHHHHcCCHHHHHHHHcCC
Confidence 99877777777788888888876643
No 26
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=99.77 E-value=2.1e-17 Score=164.97 Aligned_cols=221 Identities=15% Similarity=0.165 Sum_probs=184.1
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015951 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 204 (397)
Q Consensus 126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~-iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q 204 (397)
..+..+++.+.+.. +++.+..|+..|..++.. .++...+...|+++.|+.+|+++++++|..|+++|++++.+++..+
T Consensus 64 ~~i~~L~~~L~~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~ 142 (450)
T 2jdq_A 64 GVVARFVEFLKRKE-NCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR 142 (450)
T ss_dssp THHHHHHHHHTCTT-CHHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CcHHHHHHHHCCCC-CHHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence 35666777776652 567888999999998864 4667778889999999999999999999999999999999999999
Q ss_pred HHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015951 205 KQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 282 (397)
Q Consensus 205 ~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L 282 (397)
..+++.|++|.|++++.+ .+..++..|+++|++++++. +.....++ .++++.|+.++.++ +..++..++++|.+|
T Consensus 143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l 219 (450)
T 2jdq_A 143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV-SPCLNVLSWLLFVS--DTDVLADACWALSYL 219 (450)
T ss_dssp HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT-GGGHHHHHHHTTCC--CHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH-HHHHHHHHHHHccC--CHHHHHHHHHHHHHH
Confidence 999999999999999996 57899999999999999876 44333333 79999999999976 567999999999999
Q ss_pred hhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951 283 AKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 283 ~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 355 (397)
+.. .+.....+.+.|+++.++.+|.+++..+++.|+.+|.+++...+...+.+.+.++++.++..|+.
T Consensus 220 ~~~-----~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 287 (450)
T 2jdq_A 220 SDG-----PNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS 287 (450)
T ss_dssp TSS-----SHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC
T ss_pred HCC-----CcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC
Confidence 852 33456677889999999999999999999999999999998876655555545556666665543
No 27
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=99.77 E-value=1.5e-17 Score=171.73 Aligned_cols=221 Identities=14% Similarity=0.126 Sum_probs=186.6
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC-CchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
.+..+++.|.+++ +++.+..|+..|..++... ++...+...|++++|+.+|.++++.+|..|+|+|++++.+++..+.
T Consensus 131 ~i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~ 209 (530)
T 1wa5_B 131 VVPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRD 209 (530)
T ss_dssp CHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchH
Confidence 4555666666542 5678889999999988754 5667788899999999999999999999999999999999999999
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
.++..|++|.|+.++.+.+..++..|+++|++++++..+....+...++++.|+.++.++ +..++..|+++|.+|+.
T Consensus 210 ~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~- 286 (530)
T 1wa5_B 210 YVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSD- 286 (530)
T ss_dssp HHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHS-
T ss_pred HHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhC-
Confidence 999999999999999998889999999999999998744455666789999999999976 56799999999999995
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951 286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 355 (397)
..+.....+.+.|+++.|+.+|.+++..+++.|+.+|.+++...+...+.+.+.+++..++..|+.
T Consensus 287 ----~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~ 352 (530)
T 1wa5_B 287 ----GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSS 352 (530)
T ss_dssp ----SCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC
T ss_pred ----CCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcC
Confidence 234556778889999999999999999999999999999998776666666545666666665543
No 28
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.76 E-value=5.6e-17 Score=165.49 Aligned_cols=222 Identities=16% Similarity=0.183 Sum_probs=182.0
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
..+..+++.|.+. .+++.+..|+..|..+....++...+.+.|++++|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus 59 ~~i~~Lv~~L~~~-~~~~~~~~a~~~L~~ls~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 137 (529)
T 1jdh_A 59 QMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 137 (529)
T ss_dssp HHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHH
T ss_pred chHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHH
Confidence 3456677777654 267788899999999988888899999999999999999999999999999999999998888899
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
.+.+.|++|.|++++.+++..++..++.+|+++..+++.++..+.+.||++.|+.+++++. +...+..++.+|.+|+.
T Consensus 138 ~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~- 215 (529)
T 1jdh_A 138 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV- 215 (529)
T ss_dssp HHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTT-
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCC-hHHHHHHHHHHHHHHhc-
Confidence 9999999999999999988899999999999999999999999999999999999998653 33455556666666653
Q ss_pred hhccCCCCcchhHHhCC---------------------------------------cHHHHHHhccCCChHHHHHHHHHH
Q 015951 286 QLENMHKVEPPLFRDRF---------------------------------------FLKSVVDLTASADLDLQEKALAAI 326 (397)
Q Consensus 286 ~l~~~~~~~~~~l~~~g---------------------------------------~v~~Lv~lL~~~d~dv~E~aL~aL 326 (397)
++..+..+.+.| +++.++.+|.++++++++.++.+|
T Consensus 216 -----~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L 290 (529)
T 1jdh_A 216 -----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 290 (529)
T ss_dssp -----STTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -----CcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhHHHHhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 233334444444 455666666777888999999999
Q ss_pred HHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951 327 KNLLQLRTTEALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 327 ~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 355 (397)
.+|+..++..+..+.+.++++.++..|+.
T Consensus 291 ~~L~~~~~~~~~~~~~~~~v~~L~~ll~~ 319 (529)
T 1jdh_A 291 SNLTCNNYKNKMMVCQVGGIEALVRTVLR 319 (529)
T ss_dssp HHHTTTCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHcCChHHHHHHHHc
Confidence 99988776677778778888888887765
No 29
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=99.75 E-value=9.8e-18 Score=182.55 Aligned_cols=217 Identities=12% Similarity=0.045 Sum_probs=182.4
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHH---hcCCHHHHHHhcCCC-CHHHHHHHHHHHHHHhcCChHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLS---KLGGLSVLVGQLNHP-DTDIRKISAWILGKASQNNPLV 203 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~---~lGGl~~Li~lL~s~-~~~ir~~Aa~vLg~~aqNNp~~ 203 (397)
++-++..|.++ +++.+..|...|..++...+....|. ..|++|+|+.+|.++ +...+..|+|+|++++..++..
T Consensus 538 ip~Lv~LL~s~--~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~ 615 (810)
T 3now_A 538 VKALLRMALEG--TEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESV 615 (810)
T ss_dssp HHHHHHHHHSS--CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHccC--CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHH
Confidence 44466666654 46778899999998886666554442 257999999999875 4455679999999999999999
Q ss_pred HHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh-cCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015951 204 QKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV-EAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 282 (397)
Q Consensus 204 Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~-~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L 282 (397)
++.+++.|++|+|+.++.++++.++..|+++|++++.+ +..+..|+. .|+++.|+.++.++ +..+|..|+|+|++|
T Consensus 616 ~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~-~~~~~~~v~~~g~l~~Lv~LL~s~--d~~vq~~Aa~ALanL 692 (810)
T 3now_A 616 RQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMS-EDVIKMFEGNNDRVKFLALLCEDE--DEETATACAGALAII 692 (810)
T ss_dssp HHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTS-HHHHHHHHSSSSHHHHHHHGGGCS--SHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-hHHHHHHHhccCcHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999875 567888885 78999999999986 678999999999999
Q ss_pred hhchhccCCCCcchhHHh-CCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHH
Q 015951 283 AKCQLENMHKVEPPLFRD-RFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLR 354 (397)
Q Consensus 283 ~~~~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr 354 (397)
+.. ++.....+.+ .|+++.|+.+|.++|.+++..|+.+|.+++..++..+..+.+.|+++++...|+
T Consensus 693 t~~-----s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~ 760 (810)
T 3now_A 693 TSV-----SVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQ 760 (810)
T ss_dssp HHH-----CHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCC
T ss_pred hCC-----CHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHh
Confidence 962 4456667777 899999999999999999999999999999987778888887777877766554
No 30
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=99.74 E-value=3.9e-17 Score=158.98 Aligned_cols=166 Identities=14% Similarity=0.021 Sum_probs=147.2
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHh
Q 015951 183 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI 261 (397)
Q Consensus 183 ~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~-LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~l 261 (397)
.+-|..|+..|..++.+ ......|.+.|++|+|+. +|.++++.++..|+|+|++++.+++..++.+++.||++.|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 46799999999999974 568888999999999999 9999999999999999999999999999999999999999999
Q ss_pred hcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951 262 LGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEALVLK 341 (397)
Q Consensus 262 L~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~ 341 (397)
|+++ .+..++++|+|+|++|+.+ ++.....|.+.|.++.|+.+|++++..++..|+.+|.+|+...+..++.+.
T Consensus 133 L~~~-~~~~v~~~A~~ALsnl~~~-----~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv 206 (296)
T 1xqr_A 133 LDRD-ACDTVRVKALFAISCLVRE-----QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLC 206 (296)
T ss_dssp HHHC-SCHHHHHHHHHHHHHHHTT-----CHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred HccC-CCHHHHHHHHHHHHHHHcC-----CcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence 9853 2467999999999999962 445566788899999999999999999999999999999988777778888
Q ss_pred hcCChHHHHHHHHH
Q 015951 342 DFCGLDTALERLRQ 355 (397)
Q Consensus 342 ~~~gL~~~L~~Lr~ 355 (397)
+.|++++++..|+.
T Consensus 207 ~~g~i~~Lv~LL~~ 220 (296)
T 1xqr_A 207 SMGMVQQLVALVRT 220 (296)
T ss_dssp HTTHHHHHHHHHTS
T ss_pred HcCCHHHHHHHHcC
Confidence 78888888887764
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.74 E-value=2.4e-16 Score=167.18 Aligned_cols=223 Identities=15% Similarity=0.162 Sum_probs=187.4
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
..+..+++.|.+. .+++.+..|+..|..+....++...+.+.|+++.|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus 56 ~~i~~Lv~~L~~~-~~~~~~~~A~~~L~~Ls~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~ 134 (644)
T 2z6h_A 56 QMVSAIVRTMQNT-NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKM 134 (644)
T ss_dssp HHHHHHHHHHHSC-CCHHHHHHHHHHHHHHTTSHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred ChHHHHHHHHhcC-CCHHHHHHHHHHHHHHhcChhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHH
Confidence 4566777888764 367888899999999988888889999999999999999999999999999999999998888999
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
.+.+.|++|.|+++|++++..++..++.+|++++.+++.++..+.+.||++.|+.++.+.. ...++..++.+|.+|+.
T Consensus 135 ~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~- 212 (644)
T 2z6h_A 135 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSV- 212 (644)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTT-
T ss_pred HHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhc-
Confidence 9999999999999999988888889999999999888999999999999999999999763 45678889999999985
Q ss_pred hhccCCCCcchhHHhCCcHHHHH---------------------------------------HhccCCChHHHHHHHHHH
Q 015951 286 QLENMHKVEPPLFRDRFFLKSVV---------------------------------------DLTASADLDLQEKALAAI 326 (397)
Q Consensus 286 ~l~~~~~~~~~~l~~~g~v~~Lv---------------------------------------~lL~~~d~dv~E~aL~aL 326 (397)
.+..+..+.+.|+++.|+ .+|.+++.++++.|+.+|
T Consensus 213 -----~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL 287 (644)
T 2z6h_A 213 -----CSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 287 (644)
T ss_dssp -----CTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred -----CcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 445566666666655554 455556778888888888
Q ss_pred HHHhcCChHHHHHHHhcCChHHHHHHHHHH
Q 015951 327 KNLLQLRTTEALVLKDFCGLDTALERLRQQ 356 (397)
Q Consensus 327 ~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~ 356 (397)
.+|+..++..++.+.+.++++.++..|+..
T Consensus 288 ~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~ 317 (644)
T 2z6h_A 288 SNLTCNNYKNKMMVCQVGGIEALVRTVLRA 317 (644)
T ss_dssp HHHHTTCHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHcCCHHHHHHHHHcc
Confidence 888887766677777677888888877653
No 32
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=99.71 E-value=1.3e-16 Score=168.38 Aligned_cols=196 Identities=15% Similarity=0.095 Sum_probs=164.3
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC-ChHHHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN-NPLVQK 205 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqN-Np~~Q~ 205 (397)
+..++..|.++ +++.+..|...|..++. +.++...+...||+|+|+.+|.++++++|..|+|+|++++.+ |+..+.
T Consensus 50 i~~LV~~L~s~--~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~ 127 (584)
T 3l6x_A 50 LPEVIAMLGFR--LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKI 127 (584)
T ss_dssp HHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHCCC--CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHH
Confidence 55667777655 57788889899998884 677888999999999999999999999999999999999985 799999
Q ss_pred HHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhc----------------CCCcc
Q 015951 206 QVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILG----------------NSSFE 268 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~----------------s~~~d 268 (397)
.+.+.|+||.|+++|.+ .+.+++..|.+||.+|.. ++.+...+++ +|++.|++++. ....+
T Consensus 128 ~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d 205 (584)
T 3l6x_A 128 AIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEW 205 (584)
T ss_dssp HHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCC
T ss_pred HHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccccccccc
Confidence 99999999999999997 467889999999999976 5677777774 78999999872 01125
Q ss_pred HHHHHHHHHHHHHHhhchhccCCCCcchhHHh-CCcHHHHHHhccC------CChHHHHHHHHHHHHHhcC
Q 015951 269 IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD-RFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 269 ~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~-~g~v~~Lv~lL~~------~d~dv~E~aL~aL~~L~~~ 332 (397)
..++.+|+++|.+|+. .++..+..+++ .|+++.|+.+|++ .+...+|.|+.+|.+|+..
T Consensus 206 ~~V~~nAa~~L~NLs~-----~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~ 271 (584)
T 3l6x_A 206 ESVLTNTAGCLRNVSS-----ERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ 271 (584)
T ss_dssp HHHHHHHHHHHHHHTS-----SCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhc-----CCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc
Confidence 6899999999999985 24455777776 5778899999864 4678999999999999965
No 33
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.69 E-value=1.9e-15 Score=164.57 Aligned_cols=222 Identities=16% Similarity=0.206 Sum_probs=183.1
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
..+..+++.|.+.. +++.+..|+..|..+....++...+...|+++.|+.+|+++++.+|..|+++|++++.+++..+.
T Consensus 192 ~~i~~Lv~~L~~~~-d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~ 270 (780)
T 2z6g_A 192 QMVSAIVRTMQNTN-DVETARCTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKM 270 (780)
T ss_dssp HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHH
T ss_pred ChHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHH
Confidence 45556666776543 67889999999999888888888899999999999999999999999999999999999888999
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
.+.+.|++|.|++++.+++..++..++.+|++++.+++.++..+.+.||++.|+.++++++ +...+..++.++.+|+..
T Consensus 271 ~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~-~~~~~~~a~~aL~~Ls~~ 349 (780)
T 2z6g_A 271 AVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVC 349 (780)
T ss_dssp HHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC-HHHHHHHHHHHHHHhhcC
Confidence 9999999999999999988889999999999999889999999999999999999999763 344555667777777642
Q ss_pred hhccCCCCcchhHHhC---------------------------------------CcHHHHHHhccCCChHHHHHHHHHH
Q 015951 286 QLENMHKVEPPLFRDR---------------------------------------FFLKSVVDLTASADLDLQEKALAAI 326 (397)
Q Consensus 286 ~l~~~~~~~~~~l~~~---------------------------------------g~v~~Lv~lL~~~d~dv~E~aL~aL 326 (397)
+..+..+.+. ++++.|+.+|.+.+..+++.|+.+|
T Consensus 350 ------~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL 423 (780)
T 2z6g_A 350 ------SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGIL 423 (780)
T ss_dssp ------TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred ------hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 2223333333 4566666777778889999999999
Q ss_pred HHHhcCChHHHHHHHhcCChHHHHHHHHH
Q 015951 327 KNLLQLRTTEALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 327 ~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~ 355 (397)
.+|+..++..+..+.+.++++.++..|..
T Consensus 424 ~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~ 452 (780)
T 2z6g_A 424 SNLTCNNYKNKMMVCQVGGIEALVRTVLR 452 (780)
T ss_dssp HHHTSSCHHHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHCCCHHHHHHHHHc
Confidence 99998876677777777888888888865
No 34
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=99.68 E-value=1.7e-15 Score=154.50 Aligned_cols=221 Identities=18% Similarity=0.151 Sum_probs=181.4
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV 207 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~v 207 (397)
+..++..+.+++ ....+..+...|..+....++...+...|++++|+.+|.+++++++..|+|+|++++.+.+.. .
T Consensus 187 i~~L~~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~-~-- 262 (529)
T 1jdh_A 187 PQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ-E-- 262 (529)
T ss_dssp HHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC-S--
T ss_pred HHHHHHHHHhCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh-H--
Confidence 444556666553 334455667778888888888899999999999999999999999999999999999876532 1
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchh
Q 015951 208 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL 287 (397)
Q Consensus 208 l~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l 287 (397)
...|++|.|++++.+++++++..|+++|+++..+++.....+.+.||++.|+.+|.+++.+..++..|+++|++|+..
T Consensus 263 ~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~-- 340 (529)
T 1jdh_A 263 GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR-- 340 (529)
T ss_dssp CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS--
T ss_pred HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC--
Confidence 123789999999999999999999999999999988899999999999999999986433467999999999999852
Q ss_pred ccCCCC---cchhHHhCCcHHHHHHhccCCC-hHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhH
Q 015951 288 ENMHKV---EPPLFRDRFFLKSVVDLTASAD-LDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQ 358 (397)
Q Consensus 288 ~~~~~~---~~~~l~~~g~v~~Lv~lL~~~d-~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~ 358 (397)
++. .+..+.+.|.++.|+.+|.+++ ..+++.++.+|.+++..++ .+..+.+.+++..++..|+....
T Consensus 341 ---~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~~~~ 411 (529)
T 1jdh_A 341 ---HQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-NHAPLREQGAIPRLVQLLVRAHQ 411 (529)
T ss_dssp ---STTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHHH
T ss_pred ---CchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChh-hhHHHHHcCCHHHHHHHHHHHhH
Confidence 233 3567889999999999999886 5999999999999998765 55677767777888888876543
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=99.66 E-value=3.2e-15 Score=158.45 Aligned_cols=221 Identities=18% Similarity=0.168 Sum_probs=176.5
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHh------------------------------
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ------------------------------ 177 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~l------------------------------ 177 (397)
+..++..+.+.+ ..+.+..++..|..+....++...+.+.|+++.|+.+
T Consensus 184 v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~~~~~ 262 (644)
T 2z6h_A 184 PQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGME 262 (644)
T ss_dssp HHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTCCSCH
T ss_pred hHHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhhhhhh
Confidence 445666666553 3345556677777777777777777777777766554
Q ss_pred ---------cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHHHHHhcCCh---
Q 015951 178 ---------LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTVSSLIRNNL--- 243 (397)
Q Consensus 178 ---------L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~--~~v~~kAl~ALS~LiR~~~--- 243 (397)
|.++++++|..|+|+|++++.+++..+..+.+.|+++.|+.++.+.+ +.++..|+++|++++.+++
T Consensus 263 ~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~ 342 (644)
T 2z6h_A 263 GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAE 342 (644)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHH
Confidence 45577888999999999999989999999999999999999998633 7899999999999998765
Q ss_pred hcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC---------
Q 015951 244 AGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--------- 314 (397)
Q Consensus 244 ~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--------- 314 (397)
..+..++..||++.|+.+|.+++ +..++..|+++|++|+. ++..+..+.+.|+++.|+++|...
T Consensus 343 ~~q~~v~~~~~l~~L~~lL~~~~-~~~v~~~a~~~L~nLa~------~~~~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~ 415 (644)
T 2z6h_A 343 MAQNAVRLHYGLPVVVKLLHPPS-HWPLIKATVGLIRNLAL------CPANHAPLREQGAIPRLVQLLVRAHQDTQRRTS 415 (644)
T ss_dssp HHHHHHHHTTHHHHHHHTTSTTC-CHHHHHHHHHHHHHHTT------SGGGHHHHHHTTHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHccChHHHHHHhCccC-chHHHHHHHHHHHHHcc------CHHHHHHHHHcCCHHHHHHHHhccchhhhhHhh
Confidence 34566889999999999999763 35689999999999985 345568888999999999998753
Q ss_pred -------------ChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHh
Q 015951 315 -------------DLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQL 357 (397)
Q Consensus 315 -------------d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~ 357 (397)
+.++++.++.+|.+|+... ..+..+.+.+++++++..|+...
T Consensus 416 ~al~n~~~~~~~~~~~v~~~a~~aL~~La~~~-~~~~~l~~~~~i~~Lv~lL~~~~ 470 (644)
T 2z6h_A 416 MGGTQQQFVEGVRMEEIVEGCTGALHILARDV-HNRIVIRGLNTIPLFVQLLYSPI 470 (644)
T ss_dssp --------CCSSCHHHHHHHHHHHHHHHTTSH-HHHHHHHHTTCHHHHHHHTTCSC
T ss_pred hccccchhcccccHHHHHHHHHHHHHHHhcCH-HHHHHHHhCCcHHHHHHHHcCCC
Confidence 3568889999999999876 57888887888888888776543
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=99.62 E-value=3.3e-15 Score=162.59 Aligned_cols=222 Identities=15% Similarity=0.066 Sum_probs=180.8
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC-CchhHHHhcCCHHHHHHhcCC-C-CHHHHHHHHHHHHHHhcCCh
Q 015951 125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI-DNANDLSKLGGLSVLVGQLNH-P-DTDIRKISAWILGKASQNNP 201 (397)
Q Consensus 125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i-DnA~~~~~lGGl~~Li~lL~s-~-~~~ir~~Aa~vLg~~aqNNp 201 (397)
...+..++..+.+. +.+.+..|+..|.++.... ++...+.+.||++.|+.+|.+ + .+++|..|+++|++++.+++
T Consensus 398 ~~~i~~Lv~lL~~~--d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~ 475 (780)
T 2z6g_A 398 EGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQ 475 (780)
T ss_dssp HHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSST
T ss_pred hhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCc
Confidence 45566677777653 5778889999999988764 577888999999999999965 3 35999999999999998776
Q ss_pred H---HHHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCc----------
Q 015951 202 L---VQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF---------- 267 (397)
Q Consensus 202 ~---~Q~~vl~~g~lp~Ll~LL~s~~~-~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~---------- 267 (397)
. .|..+...|++|.|+++|.+++. .++..|+|+|+++.++ +..+..+.+.|+++.|+.+|.++..
T Consensus 476 ~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~aa~al 554 (780)
T 2z6g_A 476 DAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC-PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGG 554 (780)
T ss_dssp THHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTC---
T ss_pred hHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcchhHHHHHhhcc
Confidence 5 47789999999999999998774 8999999999999985 5667888899999999999975311
Q ss_pred ----------cHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHH
Q 015951 268 ----------EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA 337 (397)
Q Consensus 268 ----------d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r 337 (397)
...++..++.+|.+|+. ++..+..+.+.|+++.|+.+|.+++..++..|+.+|.+|+.+. ..+
T Consensus 555 ~nq~~~~~~~~~~v~~~a~~aL~~La~------~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~-~~~ 627 (780)
T 2z6g_A 555 TQQQFVEGVRMEEIVEACTGALHILAR------DIHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-EAA 627 (780)
T ss_dssp ---CCSTTCCHHHHHHHHHHHHHHHTT------SHHHHHHHHHTCCHHHHHHGGGCSCHHHHHHHHHHHHHHHTSH-HHH
T ss_pred ccchhhcccChHHHHHHHHHHHHHHhc------ChhhHHHHHHCCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCH-HHH
Confidence 12356677778888874 3456677889999999999999999999999999999999774 467
Q ss_pred HHHHhcCChHHHHHHHHHH
Q 015951 338 LVLKDFCGLDTALERLRQQ 356 (397)
Q Consensus 338 ~~~~~~~gL~~~L~~Lr~~ 356 (397)
..+.+.+|++.++..+++.
T Consensus 628 ~~i~~~g~i~~L~~Ll~~~ 646 (780)
T 2z6g_A 628 EAIEAEGATAPLTELLHSR 646 (780)
T ss_dssp HHHHHTTCHHHHHHGGGCS
T ss_pred HHHHHCCCHHHHHHHHcCC
Confidence 7888788888877655433
No 37
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.48 E-value=7e-13 Score=142.88 Aligned_cols=219 Identities=15% Similarity=0.203 Sum_probs=167.4
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHH---HHHHHHHHHHHHh-cCCh
Q 015951 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTD---IRKISAWILGKAS-QNNP 201 (397)
Q Consensus 126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~---ir~~Aa~vLg~~a-qNNp 201 (397)
..+.-++..+.+. ++..+..|...|..+..+.++...+++.||+++|+++|.+.... .|..|+++|+++. ..||
T Consensus 457 GvIp~Lv~Ll~S~--s~~~re~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 457 ELISFLKREMHNL--SPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp THHHHHHHHGGGS--CHHHHHHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred cCHHHHHHHHcCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence 4566667777654 67889999999999999999999999999999999999876544 8999999999998 4567
Q ss_pred HHHHHHHH---cCcHHHHHHhhcC--CCH-----------HH-HHHHHHHHHHHhcCCh----hcHHHHHhc-CcHHHHH
Q 015951 202 LVQKQVLE---LGALSKLMKMVKS--SFV-----------EE-AVKALYTVSSLIRNNL----AGQEMFYVE-AGDLMLQ 259 (397)
Q Consensus 202 ~~Q~~vl~---~g~lp~Ll~LL~s--~~~-----------~v-~~kAl~ALS~LiR~~~----~~~~~f~~~-gGi~~L~ 259 (397)
.. .|-. .|++|+|+.||.. +.. .. +..|+.||.||+.... ..+..++.+ |+++.|.
T Consensus 535 ~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~ 612 (778)
T 3opb_A 535 GL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIE 612 (778)
T ss_dssp HH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHH
T ss_pred HH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHH
Confidence 54 2211 3899999999983 211 12 6689999999988752 346777885 9999999
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcc-hhHHhC------CcHHHHHHhccCCChHHHHHHHHHHHHHhc-
Q 015951 260 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP-PLFRDR------FFLKSVVDLTASADLDLQEKALAAIKNLLQ- 331 (397)
Q Consensus 260 ~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~-~~l~~~------g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~- 331 (397)
.+|.++ +..+|+.|+++++||+. +++.+ ..+... +-++.|+.++.++|.++|..|..||.++++
T Consensus 613 ~LL~s~--n~~VrrAA~elI~NL~~------~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~ 684 (778)
T 3opb_A 613 NLMLDE--NVPLQRSTLELISNMMS------HPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATT 684 (778)
T ss_dssp HGGGCS--SHHHHHHHHHHHHHHHT------SGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhCC--CHHHHHHHHHHHHHHhC------CcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCC
Confidence 999986 45699999999999996 33332 233222 237789999999999999999999999975
Q ss_pred CChHHHHHHHhcCChHHHHHHHHHH
Q 015951 332 LRTTEALVLKDFCGLDTALERLRQQ 356 (397)
Q Consensus 332 ~~~~~r~~~~~~~gL~~~L~~Lr~~ 356 (397)
.+..++..++..+|++.++..|+.+
T Consensus 685 ~~~ia~~ll~~~~gi~~Ll~lL~~~ 709 (778)
T 3opb_A 685 IPLIAKELLTKKELIENAIQVFADQ 709 (778)
T ss_dssp CHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHccccHHHHHHHHhcc
Confidence 4333555555446788888888874
No 38
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.46 E-value=2.2e-12 Score=136.16 Aligned_cols=243 Identities=16% Similarity=0.132 Sum_probs=187.6
Q ss_pred HhHHHHHHHHHhcC--CCCH--HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCC------------------chhH
Q 015951 107 KRQMEIKELMEKLK--TPSD--AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID------------------NAND 164 (397)
Q Consensus 107 ~r~~~L~ea~~~~~--~~~d--~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD------------------nA~~ 164 (397)
.||.-+.+. +.+. -+.+ ..-|+-++.+|.+...+.|--..+|+.|..+....+ ++..
T Consensus 38 DRR~Av~~L-k~~sk~y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~ 116 (651)
T 3grl_A 38 DRRNAVRAL-KSLSKKYRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEI 116 (651)
T ss_dssp HHHHHHHHH-HHTTTTTTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHhHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHH
Confidence 356555543 3332 2333 224788999998887777766778888877665432 2334
Q ss_pred HH-hcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH-HHHHHHHc-CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcC
Q 015951 165 LS-KLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL-VQKQVLEL-GALSKLMKMVKSSFVEEAVKALYTVSSLIRN 241 (397)
Q Consensus 165 ~~-~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~-~Q~~vl~~-g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~ 241 (397)
|. +-++++.|+.+|++++..+|.+|..+|..++.++|. .|+.++.. +|+|.|+.+|+++.+.+|-.|+..|++++++
T Consensus 117 f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~ 196 (651)
T 3grl_A 117 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRS 196 (651)
T ss_dssp HHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTT
T ss_pred HHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcC
Confidence 43 348899999999999999999999999999999999 99999965 9999999999998899999999999999999
Q ss_pred ChhcHHHHHhcCcHHHHHHhhcCCC--ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChH--
Q 015951 242 NLAGQEMFYVEAGDLMLQDILGNSS--FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLD-- 317 (397)
Q Consensus 242 ~~~~~~~f~~~gGi~~L~~lL~s~~--~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~d-- 317 (397)
|+..|+.+.-.||++.|..++.... ..-.+...++.++.+|+. .++..+..|.+.|+++.|..+|..++..
T Consensus 197 n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr-----~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~ 271 (651)
T 3grl_A 197 NGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLK-----NNNSNQNFFKEGSYIQRMKPWFEVGDENSG 271 (651)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTCGGGGGGGGCCCSCSSC
T ss_pred CHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHh-----cCHHHHHHHHHcCCHHHHHHHhCCCccccc
Confidence 9999888888899999999998532 123478899999999996 4677888999999999999999765321
Q ss_pred ----HHHH---HHHHHHHHhcCC------hHHHHHHHhcCChHHHHHHHHH
Q 015951 318 ----LQEK---ALAAIKNLLQLR------TTEALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 318 ----v~E~---aL~aL~~L~~~~------~~~r~~~~~~~gL~~~L~~Lr~ 355 (397)
.... ++.+++.|+.-+ ..++..+.+.|++.+++..+..
T Consensus 272 W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~ 322 (651)
T 3grl_A 272 WSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMA 322 (651)
T ss_dssp CCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHcc
Confidence 2233 677777777652 2355667767777777776543
No 39
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=99.41 E-value=4.9e-12 Score=136.35 Aligned_cols=167 Identities=11% Similarity=0.136 Sum_probs=134.6
Q ss_pred hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHH---HHHHHHHHHHHH
Q 015951 162 ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVE---EAVKALYTVSSL 238 (397)
Q Consensus 162 A~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~---v~~kAl~ALS~L 238 (397)
...+.+.|++|+|+.+++++++.+|..|+|+|++++. ++.++..+++.|+++.|++++.+.+.. .+..|+.||+++
T Consensus 450 ~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArL 528 (778)
T 3opb_A 450 EKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRM 528 (778)
T ss_dssp HHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHH
Confidence 3456778999999999999999999999999999995 589999999999999999999987654 799999999998
Q ss_pred hcCChhcHHHHHh---cCcHHHHHHhhcC-CCc-----------cHHHHHHHHHHHHHHhhchhccCC---CCcchhHHh
Q 015951 239 IRNNLAGQEMFYV---EAGDLMLQDILGN-SSF-----------EIRLHRKAVSLVGDLAKCQLENMH---KVEPPLFRD 300 (397)
Q Consensus 239 iR~~~~~~~~f~~---~gGi~~L~~lL~s-~~~-----------d~klr~kA~~lL~~L~~~~l~~~~---~~~~~~l~~ 300 (397)
+-...+. ..|-. .|++++|+.+|.. +.. +..-+..|+.+|+||++. .+ ++.+..+++
T Consensus 529 lis~np~-~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~----~~n~~E~~r~~Ii~ 603 (778)
T 3opb_A 529 LIFTNPG-LIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASS----ETSDGEEVCKHIVS 603 (778)
T ss_dssp HHTSCHH-HHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHC----CSHHHHHHHHHHHH
T ss_pred HhcCCHH-HHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcC----CcccchHHHHHHHH
Confidence 8553332 23321 4999999999983 211 112377999999999972 11 245677788
Q ss_pred C-CcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951 301 R-FFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 301 ~-g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 334 (397)
+ |+++.+.++|.+++..+|..|+.+|.+|++.++
T Consensus 604 ~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e 638 (778)
T 3opb_A 604 TKVYWSTIENLMLDENVPLQRSTLELISNMMSHPL 638 (778)
T ss_dssp SHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGG
T ss_pred hcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcH
Confidence 5 999999999999999999999999999998654
No 40
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A
Probab=99.12 E-value=1.7e-09 Score=114.20 Aligned_cols=220 Identities=16% Similarity=0.166 Sum_probs=179.1
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC--CCHHHHHHHHHHHHHHhcC
Q 015951 122 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH--PDTDIRKISAWILGKASQN 199 (397)
Q Consensus 122 ~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s--~~~~ir~~Aa~vLg~~aqN 199 (397)
++..+.+..+.+.+.+. .-+++|-.|+..|..+..+. ..-+..+|++.|+..|+. .+.++-..+..+|.++...
T Consensus 17 qs~~etI~~L~~Rl~~~-tl~eDRR~Av~~Lk~~sk~y---~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~ 92 (651)
T 3grl_A 17 HTEAETIQKLCDRVASS-TLLDDRRNAVRALKSLSKKY---RLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN 92 (651)
T ss_dssp -CHHHHHHHHHHHHHHC-CSHHHHHHHHHHHHHTTTTT---TTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred CChhhHHHHHHHHHhhc-cchhHHHHHHHHHHHHHHHh---HHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence 47788899999999884 46799999999999987543 344557899999999954 6888888999999887765
Q ss_pred ChH-----------------HHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh-cHHHHHhc-CcHHHHH
Q 015951 200 NPL-----------------VQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA-GQEMFYVE-AGDLMLQ 259 (397)
Q Consensus 200 Np~-----------------~Q~~vl-~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~-~~~~f~~~-gGi~~L~ 259 (397)
++. ..+.|+ +.+.++.|+.+|++++-.+|..++..|+.++.+++. .++.+..+ +|++.|+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv 172 (651)
T 3grl_A 93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM 172 (651)
T ss_dssp C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence 543 222343 457899999999998889999999999999999988 78888865 9999999
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCCh----HHHHHHHHHHHHHhcCChH
Q 015951 260 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADL----DLQEKALAAIKNLLQLRTT 335 (397)
Q Consensus 260 ~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~----dv~E~aL~aL~~L~~~~~~ 335 (397)
.+|.++ ...+|..++.+|.+|+. .+++.+..+.-+|..+.|++++..... -+.+-++..|.+|+..+..
T Consensus 173 ~lL~d~--rE~iRneallLL~~Lt~-----~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~s 245 (651)
T 3grl_A 173 DLLADS--REVIRNDGVLLLQALTR-----SNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNS 245 (651)
T ss_dssp GGGGCS--SHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhCc--hHHHHHHHHHHHHHHhc-----CCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHH
Confidence 999987 34599999999999996 466677777778999999999977543 7899999999999999987
Q ss_pred HHHHHHhcCChHHHHHH
Q 015951 336 EALVLKDFCGLDTALER 352 (397)
Q Consensus 336 ~r~~~~~~~gL~~~L~~ 352 (397)
....|++.+++..+...
T Consensus 246 NQ~~FrEt~~i~~L~~L 262 (651)
T 3grl_A 246 NQNFFKEGSYIQRMKPW 262 (651)
T ss_dssp HHHHHHHTTCGGGGGGG
T ss_pred HHHHHHHcCCHHHHHHH
Confidence 88889977777665443
No 41
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=99.01 E-value=2.4e-09 Score=114.91 Aligned_cols=171 Identities=12% Similarity=0.078 Sum_probs=137.0
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcC-ChhcH
Q 015951 169 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSSLIRN-NLAGQ 246 (397)
Q Consensus 169 GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll-~LL~s~~~~v~~kAl~ALS~LiR~-~~~~~ 246 (397)
+.+.|+++.|+|++++.|..||++|+++++ ++..+..+...|+++.++ .+|.+++.+||..|++||++|+.+ .+...
T Consensus 34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~ 112 (684)
T 4gmo_A 34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC 112 (684)
T ss_dssp HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence 356788899999999999999999999997 788999999999998765 578888899999999999999876 46677
Q ss_pred HHHHhcCcHHHHHHhhcCCCc------------c-------HHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHH
Q 015951 247 EMFYVEAGDLMLQDILGNSSF------------E-------IRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSV 307 (397)
Q Consensus 247 ~~f~~~gGi~~L~~lL~s~~~------------d-------~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~L 307 (397)
..++..|+++.|..++.+... . ..+...++.+|++|+.. +.+....+...+.++.+
T Consensus 113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~-----s~~~~~~v~~~~~l~~l 187 (684)
T 4gmo_A 113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALA-----RDEIHEAVATKQTILRL 187 (684)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHH-----CHHHHHHHHTCHHHHHH
T ss_pred HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhC-----CHHHHHHHHhcccHHHH
Confidence 788899999999999853100 0 01233567888898863 44556677788999999
Q ss_pred HHhccCC---ChHHHHHHHHHHHHHhcCChHHHHHHHhcCC
Q 015951 308 VDLTASA---DLDLQEKALAAIKNLLQLRTTEALVLKDFCG 345 (397)
Q Consensus 308 v~lL~~~---d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~g 345 (397)
+..|... ..+++..|+.+|..|+.++....+.+.+.+.
T Consensus 188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~ 228 (684)
T 4gmo_A 188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQE 228 (684)
T ss_dssp HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCS
T ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcch
Confidence 9887432 4689999999999999998877777775443
No 42
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.92 E-value=8.9e-08 Score=85.52 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=127.8
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015951 122 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 201 (397)
Q Consensus 122 ~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp 201 (397)
+.+.......++.|.++ ++..+..|+..|..+-. -+.++.|+.+|+++++.+|..|+++|+.+.. +
T Consensus 10 ~~~~~~~~~~i~~L~~~--~~~vr~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--~ 75 (201)
T 3ltj_A 10 HTDPEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--E 75 (201)
T ss_dssp CCCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G
T ss_pred ccCCcchHHHHHHhcCC--CHHHHHHHHHHHHhcCC----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--H
Confidence 34555667777888776 57788888888876433 2578999999999999999999999998853 2
Q ss_pred HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015951 202 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 281 (397)
Q Consensus 202 ~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~ 281 (397)
.+++.|+.++.++++.+|..|+++|+.+- . ...++.|..++.++ +..+|..|+++|..
T Consensus 76 ---------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~ 133 (201)
T 3ltj_A 76 ---------RAVEPLIKALKDEDGWVRQSAAVALGQIG--D---------ERAVEPLIKALKDE--DWFVRIAAAFALGE 133 (201)
T ss_dssp ---------GGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHH
Confidence 57999999999988999999999999872 2 24678888999876 66799999999998
Q ss_pred HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951 282 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 330 (397)
Q Consensus 282 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 330 (397)
+.. ...++.|..++.++++.++..|+.+|..+.
T Consensus 134 ~~~----------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 134 IGD----------------ERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp HTC----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred hCC----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 742 356788999999999999999999998883
No 43
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.89 E-value=8.5e-08 Score=86.33 Aligned_cols=154 Identities=16% Similarity=0.141 Sum_probs=123.9
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHH
Q 015951 125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQ 204 (397)
Q Consensus 125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q 204 (397)
.+.+..+++.|.++ ++..+..|+..|..+-. -++++.|+.+|.++++.+|..|+++|+.+..
T Consensus 18 ~~~~~~L~~~L~~~--~~~vR~~A~~~L~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------ 79 (211)
T 3ltm_A 18 PEKVEMYIKNLQDD--SYYVRRAAAYALGKIGD----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD------ 79 (211)
T ss_dssp GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC------
T ss_pred HhHHHHHHHHHcCC--CHHHHHHHHHHHHHhCC----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC------
Confidence 44566677777654 57788888888876433 2578999999999999999999999999863
Q ss_pred HHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 205 KQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 205 ~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
.++++.|+.++.++++.+|..|+++|+.+- . ...++.|+.++.++ +..+|..|+.+|..+..
T Consensus 80 -----~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 80 -----ERAVEPLIKALKDEDGWVRQSAAVALGQIG--D---------ERAVEPLIKALKDE--DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp -----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC
T ss_pred -----HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c---------HHHHHHHHHHHhCC--CHHHHHHHHHHHHHcCC
Confidence 257899999999988999999999999873 1 24678888989876 66789999999998742
Q ss_pred chhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951 285 CQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 330 (397)
Q Consensus 285 ~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 330 (397)
...++.|..++..+++.++..++.+|..+.
T Consensus 142 ----------------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~ 171 (211)
T 3ltm_A 142 ----------------ERAVEPLIKALKDEDGWVRQSAADALGEIG 171 (211)
T ss_dssp ----------------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred ----------------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 246788889998889999999999988885
No 44
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=98.80 E-value=6.8e-08 Score=86.29 Aligned_cols=153 Identities=15% Similarity=0.140 Sum_probs=123.5
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
+.+..+++.+.++ ++..+..|+..|..+-. -+.++.|+.+|+++++.+|..|+++|+.+.. +
T Consensus 45 ~~~~~L~~~l~~~--~~~vr~~a~~~L~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~---- 106 (201)
T 3ltj_A 45 RAVEPLIKALKDE--DAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD--E---- 106 (201)
T ss_dssp GGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--G----
T ss_pred hHHHHHHHHHcCC--CHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--H----
Confidence 3456666777654 57788888888876532 2578999999999999999999999999853 2
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
.+++.|+.++.+++..+|..|+++|+.+- . ...++.|..++.++ +..+|..|+.+|..+-.
T Consensus 107 -----~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~~- 167 (201)
T 3ltj_A 107 -----RAVEPLIKALKDEDWFVRIAAAFALGEIG--D---------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG- 167 (201)
T ss_dssp -----GGHHHHHHHTTCSSHHHHHHHHHHHHHHT--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS-
T ss_pred -----HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--C---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc-
Confidence 48999999999989999999999999873 1 34678889999876 56799999999998842
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951 286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 330 (397)
Q Consensus 286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 330 (397)
...++.|..++..+++.+++.|..+|..+.
T Consensus 168 ---------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 168 ---------------ERVRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp ---------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred ---------------hhHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 236778888888899999999999888764
No 45
>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A
Probab=98.80 E-value=2.1e-08 Score=107.60 Aligned_cols=192 Identities=15% Similarity=0.086 Sum_probs=146.0
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcC-ChHHHHHHH
Q 015951 131 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLV-GQLNHPDTDIRKISAWILGKASQN-NPLVQKQVL 208 (397)
Q Consensus 131 ~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li-~lL~s~~~~ir~~Aa~vLg~~aqN-Np~~Q~~vl 208 (397)
.++.|.++ ++++|..|+..|.+++++..+...+.+.|++.+++ .+|..++.+||..|+++|++++.. .+.+...++
T Consensus 39 ll~~L~S~--~~~~r~~A~~al~~l~~~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~~l~ 116 (684)
T 4gmo_A 39 VLKDLKSP--DAKSRTTAAGAIANIVQDAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCVHLY 116 (684)
T ss_dssp HHHHHSSS--CCSHHHHHHHHHHHHTTSHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHcCCC--CHHHHHHHHHHHHHHHcCcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHHHHH
Confidence 45566655 46789999999999999888888899999999877 578999999999999999999975 688999999
Q ss_pred HcCcHHHHHHhhcCCCH---------------------HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC-CC
Q 015951 209 ELGALSKLMKMVKSSFV---------------------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN-SS 266 (397)
Q Consensus 209 ~~g~lp~Ll~LL~s~~~---------------------~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s-~~ 266 (397)
..|++++|+.++.+... .+...++++|.+++.++..+...+...++++.|+..|.+ ..
T Consensus 117 ~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~ 196 (684)
T 4gmo_A 117 RLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADI 196 (684)
T ss_dssp HTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCC
T ss_pred HcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCC
Confidence 99999999999853211 123467788888888888888899999999999999853 22
Q ss_pred ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHH---HHHHhccCCChHHHHHHHHHHHHHh
Q 015951 267 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLK---SVVDLTASADLDLQEKALAAIKNLL 330 (397)
Q Consensus 267 ~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~---~Lv~lL~~~d~dv~E~aL~aL~~L~ 330 (397)
....++..|+.+|+.|+. .++.....+.+.+... .+..+.+..+ ..+--+...|.++.
T Consensus 197 ~~~~v~~~a~~~L~~ls~-----dn~~~~~~i~~~~~~~~~~~ll~~~~~~~-~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 197 APQDIYEEAISCLTTLSE-----DNLKVGQAITDDQETHVYDVLLKLATGTD-PRAVMACGVLHNVF 257 (684)
T ss_dssp SCHHHHHHHHHHHHHHHT-----TCHHHHHHHHTCCSSCHHHHHHHHHHSSC-TTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhc-----cCHHHHHHHHhcchHHHHHHHHHHhcCCc-HHHHHHHHHHHhHh
Confidence 356789999999999985 3455666676665432 3333333333 33445556666653
No 46
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=98.77 E-value=8.3e-08 Score=86.40 Aligned_cols=156 Identities=15% Similarity=0.138 Sum_probs=123.2
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
+.+..+++.+.++ ++..+..|+..|..+-. -+.++.|+.+|+++++.+|..|+++|+.+..
T Consensus 50 ~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~------- 110 (211)
T 3ltm_A 50 RAVEPLIKALKDE--DAWVRRAAADALGQIGD----------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD------- 110 (211)
T ss_dssp GGHHHHHHHTTCS--CHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-------
T ss_pred cHHHHHHHHHcCC--CHHHHHHHHHHHHhhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------
Confidence 3455566777654 67788888888876532 3578999999999999999999999999853
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
.+.++.|+.++.+++..+|..|+++|+.+- . ...++.|..++.++ +..+|..|+.+|..+..
T Consensus 111 ----~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~--~---------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~- 172 (211)
T 3ltm_A 111 ----ERAVEPLIKALKDEDWFVRIAAAFALGEIG--D---------ERAVEPLIKALKDE--DGWVRQSAADALGEIGG- 172 (211)
T ss_dssp ----GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--C---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCS-
T ss_pred ----HHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc-
Confidence 258999999999999999999999999882 2 24678889999876 56799999999998842
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951 286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 333 (397)
...++.|..+++.+++.++..|..+|..+....
T Consensus 173 ---------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 173 ---------------ERVRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp ---------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred ---------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 246778888898899999999999998887654
No 47
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.71 E-value=6.5e-07 Score=84.05 Aligned_cols=121 Identities=10% Similarity=0.079 Sum_probs=79.6
Q ss_pred cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHH
Q 015951 178 LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLM 257 (397)
Q Consensus 178 L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~ 257 (397)
++++++.+|..|+++||.+...+|.... .++|.|+.++.+++..+|..|+++|+.+.. ...++.
T Consensus 100 ~~d~~~~vr~~a~~aL~~l~~~~~~~~~-----~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~ 163 (280)
T 1oyz_A 100 LNDKSACVRATAIESTAQRCKKNPIYSP-----KIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPL 163 (280)
T ss_dssp HHCSCHHHHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhccCCcccH-----HHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHH
Confidence 3556666777777777766654443222 346777777777777777777777775521 246777
Q ss_pred HHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951 258 LQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLL 330 (397)
Q Consensus 258 L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 330 (397)
|..++.++ +..+|..|+++|..+.. + ....++.++.+|..+++.++..|+.+|..+.
T Consensus 164 L~~~l~d~--~~~vr~~a~~aL~~~~~------~--------~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~ 220 (280)
T 1oyz_A 164 LINLLKDP--NGDVRNWAAFAININKY------D--------NSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK 220 (280)
T ss_dssp HHHHHTCS--SHHHHHHHHHHHHHHTC------C--------CHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCC--CHHHHHHHHHHHHhhcc------C--------cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Confidence 77777765 45577788888777631 1 1245677888888888888888888887775
No 48
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=98.63 E-value=1e-06 Score=82.71 Aligned_cols=146 Identities=10% Similarity=0.026 Sum_probs=108.6
Q ss_pred CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh
Q 015951 141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 220 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL 220 (397)
++..+..|+..|..+...... ..-..++.|+.+|+++++.+|..|+++||.+.. .+++|.|+.++
T Consensus 104 ~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l 168 (280)
T 1oyz_A 104 SACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLL 168 (280)
T ss_dssp CHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHH
Confidence 455666666666654321100 012357888889999999999999999998753 25899999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015951 221 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 300 (397)
Q Consensus 221 ~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 300 (397)
.+++..+|..|+++|+.+-.+.+ ..++.|..++.++ +..+|..|++.|..+..
T Consensus 169 ~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~--~~~vR~~A~~aL~~~~~---------------- 221 (280)
T 1oyz_A 169 KDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK--NEEVRIEAIIGLSYRKD---------------- 221 (280)
T ss_dssp TCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS--CHHHHHHHHHHHHHTTC----------------
T ss_pred cCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC--CHHHHHHHHHHHHHhCC----------------
Confidence 99999999999999998743222 3467889999876 56789999999988742
Q ss_pred CCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951 301 RFFLKSVVDLTASADLDLQEKALAAIKNLL 330 (397)
Q Consensus 301 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 330 (397)
...++.|+.++..++ ++..++.+|..+.
T Consensus 222 ~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 222 KRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp GGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred HhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 357888889888755 8888888888775
No 49
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=98.51 E-value=5.1e-06 Score=81.47 Aligned_cols=193 Identities=17% Similarity=0.114 Sum_probs=148.1
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHh-ccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015951 123 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLI-LVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 201 (397)
Q Consensus 123 ~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~-Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp 201 (397)
++......+++.|.+. +.+++..+|..|.. +-++.+.|..|+..+|+..|+......+.+.+.++..+++.+.-.+.
T Consensus 115 sps~ra~~iiekL~~~--~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~ 192 (339)
T 3dad_A 115 QLSVRVNAILEKLYSS--SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVD 192 (339)
T ss_dssp CHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHH
T ss_pred CcHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccc
Confidence 4556778888999865 57889999999998 55899999999999999999999999999999999999999996533
Q ss_pred HHHHHHH-HcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc-------Cc---HHHHHHhhcC-CCccH
Q 015951 202 LVQKQVL-ELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE-------AG---DLMLQDILGN-SSFEI 269 (397)
Q Consensus 202 ~~Q~~vl-~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~-------gG---i~~L~~lL~s-~~~d~ 269 (397)
--+.++ ....|..|..++.+....+...|+.-|-+++-..+.+...+.++ .| |+.|+.+|++ ++.|.
T Consensus 193 -Gm~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~ 271 (339)
T 3dad_A 193 -GMLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADP 271 (339)
T ss_dssp -HHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCH
T ss_pred -cccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCH
Confidence 343444 44678999999998777888888888888887766555554432 23 8899999972 12477
Q ss_pred HHHHHHHHHHHHHhhchhccCCC-----CcchhHHhCCcHHHHHHhccCC--ChHHHHHH
Q 015951 270 RLHRKAVSLVGDLAKCQLENMHK-----VEPPLFRDRFFLKSVVDLTASA--DLDLQEKA 322 (397)
Q Consensus 270 klr~kA~~lL~~L~~~~l~~~~~-----~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~a 322 (397)
.++.+|+.+|..+... .++ +....+.+.|+-..+..+++.. |++++++.
T Consensus 272 elq~~amtLIN~lL~~----apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Ql 327 (339)
T 3dad_A 272 ELLVYTVTLINKTLAA----LPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQL 327 (339)
T ss_dssp HHHHHHHHHHHHHHHH----CSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHHH
Confidence 8999999999999863 221 2344566677666677777664 66777664
No 50
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=98.39 E-value=1.9e-05 Score=73.89 Aligned_cols=186 Identities=13% Similarity=0.176 Sum_probs=145.8
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 127 LIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 127 lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l-GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
....++..|.+. +..-+.++|..|++++...|-.-..... .+++.++.++.+.+..+-..|..||+++..|.|-.-+
T Consensus 34 ~l~~L~~LL~dk--D~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~ 111 (265)
T 3b2a_A 34 ALFLILELAGED--DETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSK 111 (265)
T ss_dssp HHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHH
T ss_pred HHHHHHHHHhcc--chHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHH
Confidence 445566666443 6778999999999999887655444443 6899999999999999999999999999999998888
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhc
Q 015951 206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKC 285 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~ 285 (397)
.+.. .+..|..++.+.++-.+..|.-.++.+ + +.... -.-+..|.+++.|+ +.++|.-+..++.+++..
T Consensus 112 ~y~K--l~~aL~dlik~~~~il~~eaae~Lgkl-k--v~~~~----~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~ 180 (265)
T 3b2a_A 112 TFLK--AAKTLVSLLESPDDMMRIETIDVLSKL-Q--PLEDS----KLVRTYINELVVSP--DLYTKVAGFCLFLNMLNS 180 (265)
T ss_dssp HHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHC-C--BSCCC----HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGG
T ss_pred HHHH--HHHHHHHHhcCCCchHHHHHHHHhCcC-C--cccch----HHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcc
Confidence 7776 578889999988888888899999887 2 22101 13456788889765 788999999999999863
Q ss_pred hhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951 286 QLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 286 ~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 333 (397)
..++.... +++.-+-++|++.|+.++|.|+.++..+++.+
T Consensus 181 ---S~D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p 220 (265)
T 3b2a_A 181 ---SADSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSFP 220 (265)
T ss_dssp ---CSSCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC
T ss_pred ---cCCHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc
Confidence 23344333 45566788999999999999999999999763
No 51
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=98.39 E-value=5.4e-06 Score=76.55 Aligned_cols=181 Identities=11% Similarity=0.125 Sum_probs=131.1
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHhccCC-CCc-hhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCCh-HHHHH
Q 015951 131 AIDDLNNSTLSLEDSQRALQELLILVEP-IDN-ANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNNP-LVQKQ 206 (397)
Q Consensus 131 ~i~~L~~~~~s~e~k~~AL~~L~~Lve~-iDn-A~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNNp-~~Q~~ 206 (397)
..+.+.+ .+-..|..|+..|..+++. .+. ..++.+ .++.|...| +.++..+|..|+.+++.++..-. .....
T Consensus 20 l~~~l~s--~~w~~R~~a~~~L~~l~~~~~~~~~~~~~~--i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 20 FYDKLEE--KKWTLRKESLEVLEKLLTDHPKLENGEYGA--LVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp HHHHHTC--SSHHHHHHHHHHHHHHHHHCSSBCCCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHhhhcc--CCHHHHHHHHHHHHHHHccCCCCCCCCHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 3344543 3677899999999988865 221 122322 366677888 48999999999999999995311 12121
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch
Q 015951 207 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ 286 (397)
Q Consensus 207 vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~ 286 (397)
+ ...+|.|+..+.+.+..+|..|..||.+++...+ ... -++.|...++++ +.++|..++.+|..++..
T Consensus 96 ~--~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~--~~~-----ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~- 163 (242)
T 2qk2_A 96 A--SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS--LEA-----QQESIVESLSNK--NPSVKSETALFIARALTR- 163 (242)
T ss_dssp H--HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC--HHH-----HHHHHHHHTTCS--CHHHHHHHHHHHHHHHTT-
T ss_pred H--HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC--HHH-----HHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH-
Confidence 1 2379999999999899999999999999987543 122 355677778876 568999999999997642
Q ss_pred hccCCCC--cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 287 LENMHKV--EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 287 l~~~~~~--~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
..+. ....+ ..+++.++.+|...+..+|..|..++..+...
T Consensus 164 ---~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~ 206 (242)
T 2qk2_A 164 ---TQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKL 206 (242)
T ss_dssp ---CCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHH
T ss_pred ---cCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH
Confidence 2222 22333 36889999999999999999999999998864
No 52
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.32 E-value=1.6e-06 Score=94.26 Aligned_cols=175 Identities=14% Similarity=0.072 Sum_probs=122.4
Q ss_pred HHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC
Q 015951 145 SQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF 224 (397)
Q Consensus 145 k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~ 224 (397)
+..|...|..+++... ..+.. ..++.+.++|+++++.+|..|+++||.++.+.+..-... -.+.+|.|+.++++++
T Consensus 338 r~~a~~~L~~la~~~~--~~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~~l~d~~ 413 (852)
T 4fdd_A 338 RKCSAAALDVLANVYR--DELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDKK 413 (852)
T ss_dssp HHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHhcc--HHHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHcCCCC
Confidence 4455555555443322 12221 346666778889999999999999999998876532222 2467999999999999
Q ss_pred HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcH
Q 015951 225 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL 304 (397)
Q Consensus 225 ~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v 304 (397)
+.+|..|+++|+.+....+.....-+-.+-++.|...+.++ +.++|..|++++.+++.. ..+...+.+ ..++
T Consensus 414 ~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~--~~~vr~~a~~aL~~l~~~----~~~~l~~~l--~~ll 485 (852)
T 4fdd_A 414 ALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS--NKRVQEAACSAFATLEEE----ACTELVPYL--AYIL 485 (852)
T ss_dssp HHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----HGGGGGGGH--HHHH
T ss_pred HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHH----hhHhhHhHH--HHHH
Confidence 99999999999998865433111111235677888888775 568999999999999964 233344433 4677
Q ss_pred HHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951 305 KSVVDLTASADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 305 ~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 331 (397)
+.+..+++..+......++.++..++.
T Consensus 486 ~~L~~~l~~~~~~~~~~~~~ai~~l~~ 512 (852)
T 4fdd_A 486 DTLVFAFSKYQHKNLLILYDAIGTLAD 512 (852)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 778888877777777777788887763
No 53
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.31 E-value=7.8e-06 Score=83.51 Aligned_cols=134 Identities=10% Similarity=0.007 Sum_probs=102.2
Q ss_pred CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh
Q 015951 141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 220 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL 220 (397)
+++.+..|++.|..+++..... ...-..+|.+..+++++++.+|..|+.+++.++...+.- ......+|.+.+++
T Consensus 177 ~~~VR~~a~~~l~~l~~~~~~~--~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~ 251 (588)
T 1b3u_A 177 TPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAA 251 (588)
T ss_dssp CHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcHH--hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHc
Confidence 6778888899888887765432 223356778888899999999999999999998765431 22334789999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 221 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 221 ~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
.+++..+|..|+.+|+.+....++ ..+...-++.+..+++++ +..+|..|+..+..++.
T Consensus 252 ~d~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~--~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 252 EDKSWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDC--EAEVRAAASHKVKEFCE 310 (588)
T ss_dssp TCSSHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCC--cHHHHHHHHHHHHHHHH
Confidence 888888999999999998865322 123345688889999876 56789999999999886
No 54
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=98.30 E-value=4.9e-06 Score=85.03 Aligned_cols=172 Identities=11% Similarity=0.017 Sum_probs=122.4
Q ss_pred CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh
Q 015951 141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV 220 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL 220 (397)
+...+..+++.|..++...... +..-..++.++.+|.+++..+|..|+.+++.++..... .+.....+|.|+.++
T Consensus 415 ~~~vr~~~~~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~---~~~~~~llp~l~~~~ 489 (588)
T 1b3u_A 415 KWRVRLAIIEYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK---EWAHATIIPKVLAMS 489 (588)
T ss_dssp SHHHHHHHHHHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH---HHHHHHTHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc---hhHHHHHHHHHHHHh
Confidence 3445666666666554322211 11112467778889999999999999999999875322 122345789999998
Q ss_pred cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh
Q 015951 221 KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD 300 (397)
Q Consensus 221 ~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~ 300 (397)
.+++..+|..++++++.++..... .++...-++.|..++.++ +..+|..+++++..++.. .+ ..+..
T Consensus 490 ~~~~~~~R~~a~~~l~~l~~~~~~---~~~~~~~~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~----~~----~~~~~ 556 (588)
T 1b3u_A 490 GDPNYLHRMTTLFCINVLSEVCGQ---DITTKHMLPTVLRMAGDP--VANVRFNVAKSLQKIGPI----LD----NSTLQ 556 (588)
T ss_dssp TCSCHHHHHHHHHHHHHHHHHHHH---HHHHHHTHHHHHHGGGCS--CHHHHHHHHHHHHHHGGG----SC----HHHHH
T ss_pred hCCCHHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHhhCCCC--CchHHHHHHHHHHHHHHH----hc----hhhhH
Confidence 888888999999999999875432 233456788888988876 556899999999999852 11 22334
Q ss_pred CCcHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951 301 RFFLKSVVDLTASADLDLQEKALAAIKNLL 330 (397)
Q Consensus 301 ~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 330 (397)
..+++.+..++...|.++++.|..|+..+.
T Consensus 557 ~~~~p~l~~l~~d~d~~vr~~a~~al~~l~ 586 (588)
T 1b3u_A 557 SEVKPILEKLTQDQDVDVKYFAQEALTVLS 586 (588)
T ss_dssp HHHHHHHHHHTTCSSHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCchhHHHHHHHHHHHhh
Confidence 567777778778889999999999988764
No 55
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=98.30 E-value=6.3e-08 Score=81.60 Aligned_cols=119 Identities=10% Similarity=0.066 Sum_probs=87.6
Q ss_pred CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH
Q 015951 169 GGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM 248 (397)
Q Consensus 169 GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~ 248 (397)
..++.++.+|+++++.+|..|+++|+.+.. + .++.|+.+|++++..+|..|+++|+.+- .+
T Consensus 12 ~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~--~----------~~~~L~~~L~d~~~~vR~~A~~aL~~~~--~~----- 72 (131)
T 1te4_A 12 SGLVPRGSHMADENKWVRRDVSTALSRMGD--E----------AFEPLLESLSNEDWRIRGAAAWIIGNFQ--DE----- 72 (131)
T ss_dssp ---------CCSSCCCSSSSCCSSTTSCSS--T----------THHHHHHGGGCSCHHHHHHHHHHHGGGC--SH-----
T ss_pred ccHHHHHHHhcCCCHHHHHHHHHHHHHhCc--h----------HHHHHHHHHcCCCHHHHHHHHHHHHhcC--CH-----
Confidence 467788899999999999999999987642 1 3689999999888899999999999863 11
Q ss_pred HHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015951 249 FYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 328 (397)
Q Consensus 249 f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~ 328 (397)
..++.|..+|.++ +..+|..|+++|..+.. ...++.|..+++.+|..++..|..+|..
T Consensus 73 ----~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~----------------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 ----RAVEPLIKLLEDD--SGFVRSGAARSLEQIGG----------------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ----HHHHHHHHHHHHC--CTHHHHHHHHHHHHHCS----------------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ----HHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 2477888888765 56789999999988742 2357788888988899999999887754
No 56
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.27 E-value=3e-05 Score=81.33 Aligned_cols=166 Identities=16% Similarity=0.157 Sum_probs=128.3
Q ss_pred CHHHHHHHHHHHHhcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHh
Q 015951 141 SLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 219 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lv-e~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~L 219 (397)
+.+.|..++..+-++. ...|. ..+++.+++++.+++..+|..+...+..++..+|+.. .-+++.|.+-
T Consensus 26 ~~~~k~~~~~kli~~~~~G~d~------~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kd 94 (591)
T 2vgl_B 26 KKEKRKEAVKKVIAAMTVGKDV------SSLFPDVVNCMQTDNLELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKD 94 (591)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCC------GGGHHHHHHTTSSSCHHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGG
T ss_pred CHHHHHHHHHHHHHHHHCCCCh------HHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHH
Confidence 3566777766666543 23332 2378889999999999999999999999988766543 2356788888
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHH
Q 015951 220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFR 299 (397)
Q Consensus 220 L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~ 299 (397)
+.++++.+|..|+.+|+++. .+.....+ ++.+..++.++ ++.+|.+|+.++..++.. +++. +.
T Consensus 95 L~~~n~~ir~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~--~~~VRk~A~~al~~i~~~-----~p~~---~~ 157 (591)
T 2vgl_B 95 CEDPNPLIRALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDE--DPYVRKTAAVCVAKLHDI-----NAQM---VE 157 (591)
T ss_dssp SSSSSHHHHHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCS--CHHHHHHHHHHHHHHHHS-----SCCC---HH
T ss_pred cCCCCHHHHHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCC--ChHHHHHHHHHHHHHHhh-----Chhh---cc
Confidence 99989999999999999984 34433333 46788888876 678999999999999862 3443 34
Q ss_pred hCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951 300 DRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 300 ~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 334 (397)
+.++++.+..+|..+|+.|+..|+.+|..+....+
T Consensus 158 ~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~ 192 (591)
T 2vgl_B 158 DQGFLDSLRDLIADSNPMVVANAVAALSEISESHP 192 (591)
T ss_dssp HHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCC
T ss_pred cccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCC
Confidence 46899999999999999999999999999988754
No 57
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=98.19 E-value=6.7e-06 Score=89.30 Aligned_cols=188 Identities=14% Similarity=0.084 Sum_probs=131.4
Q ss_pred HHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc--CCHHHHHHhc-----------CC-----------CCHHHH
Q 015951 131 AIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQL-----------NH-----------PDTDIR 186 (397)
Q Consensus 131 ~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l--GGl~~Li~lL-----------~s-----------~~~~ir 186 (397)
++..+.+ .+++.+..|++.+..+++.....+.+... ..+|.++..+ .. .+-.+|
T Consensus 261 l~~~~~~--~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr 338 (852)
T 4fdd_A 261 MLQRTQD--QDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLR 338 (852)
T ss_dssp HHHHHTC--SSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHH
T ss_pred HHHHccC--CcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHH
Confidence 3344443 35677888999988888764332212111 2355666665 22 223579
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC
Q 015951 187 KISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS 266 (397)
Q Consensus 187 ~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~ 266 (397)
..|+.+|+.++...+. .++. ..+|.+.+++.+++..+|..|++||++++.+.+.....+ -.+.++.|..++.++
T Consensus 339 ~~a~~~L~~la~~~~~---~~~~-~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~~l~~~l~d~- 412 (852)
T 4fdd_A 339 KCSAAALDVLANVYRD---ELLP-HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY-LPELIPHLIQCLSDK- 412 (852)
T ss_dssp HHHHHHHHHHHHHHGG---GGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHHHHHHHTTCS-
T ss_pred HHHHHHHHHHHHhccH---HHHH-HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHcCCC-
Confidence 9999999999976542 2333 468888888988888999999999999998776533332 246789999999876
Q ss_pred ccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 267 FEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 267 ~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
+..+|..|+++++.++.... ....... -..+++.++..|..+++.+++.|+.+|.+++..
T Consensus 413 -~~~Vr~~a~~~l~~l~~~~~---~~~~~~~--~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~ 472 (852)
T 4fdd_A 413 -KALVRSITCWTLSRYAHWVV---SQPPDTY--LKPLMTELLKRILDSNKRVQEAACSAFATLEEE 472 (852)
T ss_dssp -SHHHHHHHHHHHHHTHHHHH---HSCTTTT--HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHhc---cchHHHH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 66899999999999986310 0111111 135778888888888999999999999999854
No 58
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=98.17 E-value=2e-05 Score=82.63 Aligned_cols=160 Identities=16% Similarity=0.169 Sum_probs=112.3
Q ss_pred HhHHHHHHHHHhc-CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHH
Q 015951 107 KRQMEIKELMEKL-KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDI 185 (397)
Q Consensus 107 ~r~~~L~ea~~~~-~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~i 185 (397)
+|.+-+++.+-.+ .+.+-....-..++.+.++ +.+.|..+.-.+..+.+. + .++. .-.+..+.+-|+++++.+
T Consensus 29 ~k~~~~~kli~~~~~G~d~~~~~~~vi~l~~s~--~~~~Krl~yl~l~~~~~~--~-~e~~-~l~~n~l~kdL~~~n~~i 102 (591)
T 2vgl_B 29 KRKEAVKKVIAAMTVGKDVSSLFPDVVNCMQTD--NLELKKLVYLYLMNYAKS--Q-PDMA-IMAVNSFVKDCEDPNPLI 102 (591)
T ss_dssp HHHHHHHHHHHHHHTTCCCGGGHHHHHHTTSSS--CHHHHHHHHHHHHHHHHH--S-HHHH-HTTHHHHGGGSSSSSHHH
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHccc--C-chHH-HHHHHHHHHHcCCCCHHH
Confidence 4555566665433 2433334455566655443 466676655555554431 1 1121 234567777899999999
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCC
Q 015951 186 RKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNS 265 (397)
Q Consensus 186 r~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~ 265 (397)
|..|..+||++. +|..... .+|.+.+++.+.++.+|.+|++|+..+.+.+|.... ..+-++.|..+|.++
T Consensus 103 r~~AL~~L~~i~--~~~~~~~-----l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~---~~~~~~~l~~lL~d~ 172 (591)
T 2vgl_B 103 RALAVRTMGCIR--VDKITEY-----LCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVE---DQGFLDSLRDLIADS 172 (591)
T ss_dssp HHHHHHHHHTCC--SGGGHHH-----HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHH---HHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHcCC--hHHHHHH-----HHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcc---cccHHHHHHHHhCCC
Confidence 999999999986 4544433 468899999999999999999999999998876433 345678999999876
Q ss_pred CccHHHHHHHHHHHHHHhh
Q 015951 266 SFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 266 ~~d~klr~kA~~lL~~L~~ 284 (397)
+..++..|+.++..++.
T Consensus 173 --d~~V~~~A~~aL~~i~~ 189 (591)
T 2vgl_B 173 --NPMVVANAVAALSEISE 189 (591)
T ss_dssp --CHHHHHHHHHHHHHHTT
T ss_pred --ChhHHHHHHHHHHHHHh
Confidence 66799999999999985
No 59
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=98.12 E-value=2.4e-05 Score=73.46 Aligned_cols=182 Identities=9% Similarity=0.020 Sum_probs=128.9
Q ss_pred CCHHHHHHHHHHHHh-ccCC-CCc---hhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcCC--hHHH-HHHHHc
Q 015951 140 LSLEDSQRALQELLI-LVEP-IDN---ANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQNN--PLVQ-KQVLEL 210 (397)
Q Consensus 140 ~s~e~k~~AL~~L~~-Lve~-iDn---A~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqNN--p~~Q-~~vl~~ 210 (397)
....+|..|++.|.. +++. .+- ..++.. .+..|...| +.++..+|..|+.+|+.++.+- +..+ ....
T Consensus 28 ~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~--~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~~-- 103 (249)
T 2qk1_A 28 SKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSN--LLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYVS-- 103 (249)
T ss_dssp SSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHH--HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHHH--
T ss_pred CCHHHHHHHHHHHHHHHHhcCCccccCcccHHH--HHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHHH--
Confidence 367889999999999 8853 121 122332 266777888 7899999999999999999531 2232 2222
Q ss_pred CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015951 211 GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 290 (397)
Q Consensus 211 g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~ 290 (397)
-.+|.++..+.+....|+..+.+|+-+++.+.++....-+-..-++.|...|+++ +..+|..++.+|..++.. .
T Consensus 104 ~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k--~~~vk~~al~~l~~~~~~----~ 177 (249)
T 2qk1_A 104 LVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHK--TPQIRMECTQLFNASMKE----E 177 (249)
T ss_dssp HHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHH----C
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHH----c
Confidence 2699999999998899999999999998876432111000012456777888876 567999999999999863 1
Q ss_pred CC--CcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951 291 HK--VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 291 ~~--~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 331 (397)
.. ..........+++.+..++...+..+|+.|..++..+..
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 11 111112235789999999999999999999999998874
No 60
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=98.11 E-value=1.3e-05 Score=77.51 Aligned_cols=137 Identities=16% Similarity=0.198 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHH--hcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHc--CcHHH--
Q 015951 142 LEDSQRALQELLILVEPIDNANDLSKLGGLSVLVG--QLNHPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSK-- 215 (397)
Q Consensus 142 ~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~--lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~--g~lp~-- 215 (397)
.+.-..||+.|.++.|+|...-.|.... ++.|-. |..+..+.+|..|+++||.+-+|||.+-+.|.+. ..+..
T Consensus 42 ~~~le~aLD~L~ElSHDi~~G~KI~~~e-f~lL~nL~~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf 120 (315)
T 3qml_C 42 IARLEDSFDRIMEFAHDYKHGYKIITHE-FALLANLSLNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIM 120 (315)
T ss_dssp HHHHHHHHHHHGGGTTSHHHHHHHHHHH-HHHHHHHHHCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHhhhHHHhCc-HHHHHHHHhhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHH
Confidence 3456789999999999999988887643 444444 4466788999999999999999999999988874 22333
Q ss_pred --HHHhhcC---CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 216 --LMKMVKS---SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 216 --Ll~LL~s---~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
|-.++.. ....+++.-+++|..|+.+. ..| ...|+..|..++.....+..+|+|+..++.++..
T Consensus 121 ~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~----~~F-~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~ 189 (315)
T 3qml_C 121 AALSNLNDSNHRSSNILIKRYLSILNELPVTS----EDL-PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK 189 (315)
T ss_dssp HHHHHHHCC--CCCHHHHHHHHHHHHHSCCCS----TTC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccchhHHHHHHHHHHHHHHhcCh----Hhh-hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence 3333322 23456677899999998764 234 3568899999887433366799999999999874
No 61
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=98.01 E-value=0.00014 Score=71.82 Aligned_cols=198 Identities=14% Similarity=0.136 Sum_probs=122.6
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCch---hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015951 125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA---NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 201 (397)
Q Consensus 125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA---~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp 201 (397)
..++..++..+.+.+.+.+.+..|+..+..+++-+... ..+... .++.+..++.++++++|..++++++.++...+
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~-l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~ 249 (462)
T 1ibr_B 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHF-IMQVVCEATQCPDTRVRVAALQNLVKIMSLYY 249 (462)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHH-HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCG
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHH-HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 34666677777776446788888998888766543211 111111 25555667788999999999999999997665
Q ss_pred HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh------------------hcH-------H---------
Q 015951 202 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL------------------AGQ-------E--------- 247 (397)
Q Consensus 202 ~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~------------------~~~-------~--------- 247 (397)
..-...+..+.++.++..+.+.++.++..|+..++.+++... ... .
T Consensus 250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~ 329 (462)
T 1ibr_B 250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT 329 (462)
T ss_dssp GGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHH
Confidence 321111111456666666666666777777666666554310 000 0
Q ss_pred --------------------------------HHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC-c
Q 015951 248 --------------------------------MFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-E 294 (397)
Q Consensus 248 --------------------------------~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~-~ 294 (397)
.++ ...++.+...+.++ +.++|..|+++++.++.. ..+. .
T Consensus 330 l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~~~~-~~~~~~l~~~l~~~--~~~~r~aal~~l~~l~~~----~~~~~~ 402 (462)
T 1ibr_B 330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV-PHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEG----PEPSQL 402 (462)
T ss_dssp TTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-HHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSS----SCTTTT
T ss_pred HHhcccccccccchHHHHHHHHHHHHHHhccHHHH-HHHHHHHHHHhcCC--ChHHHHHHHHHHHHHhcC----CcHHHH
Confidence 000 01233334444443 556777777777777642 1111 2
Q ss_pred chhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 295 PPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 295 ~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
.+.+ ..+++.++.+|+.+++.+|..|+.+|.+++..
T Consensus 403 ~~~l--~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 403 KPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp CTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 2222 56889999999999999999999999999864
No 62
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.98 E-value=0.00011 Score=83.03 Aligned_cols=193 Identities=11% Similarity=0.094 Sum_probs=135.2
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCc-hhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHH
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDN-ANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQ 206 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDn-A~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~ 206 (397)
+..+++.+.++ +.+.|..|+..|...+..--. ...-..-..++.+++.|.++++.+|..|+.+|+.++...+. .
T Consensus 8 l~~lL~~l~s~--d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~ 82 (1230)
T 1u6g_C 8 ISNLLEKMTSS--DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---Y 82 (1230)
T ss_dssp HHHHHHHTTCS--SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---H
T ss_pred HHHHHHhcCCC--CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH---H
Confidence 44555665544 577888888888876543110 00011113567788999999999999999999999987654 1
Q ss_pred HHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-----HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015951 207 VLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 281 (397)
Q Consensus 207 vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~-----~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~ 281 (397)
.+. ..++.|+..+.++++.+|..|..+|+.++...++. ....+-..-++.|...+.+. .+.++|..|+.++..
T Consensus 83 ~~~-~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~-~~~~~~~~al~~l~~ 160 (1230)
T 1u6g_C 83 QVE-TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQ-EDVSVQLEALDIMAD 160 (1230)
T ss_dssp HHH-HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCC-SCHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCC-CchHHHHHHHHHHHH
Confidence 122 36788898888888888999999999998775542 11112235678888888742 256789999999999
Q ss_pred HhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951 282 LAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 282 L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 333 (397)
++.. ..+...+.+ ..+++.+...|.+++..+|+.|+.+|..++...
T Consensus 161 ~~~~----~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~ 206 (1230)
T 1u6g_C 161 MLSR----QGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSC 206 (1230)
T ss_dssp HHHH----TCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC
T ss_pred HHHH----hHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhc
Confidence 9852 122333322 356777888888889999999999999998764
No 63
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.89 E-value=4.3e-05 Score=75.47 Aligned_cols=200 Identities=9% Similarity=-0.015 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhH------HHhc------CCHHHHHHhcCCCCHHHHHHHHH
Q 015951 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAND------LSKL------GGLSVLVGQLNHPDTDIRKISAW 191 (397)
Q Consensus 124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~------~~~l------GGl~~Li~lL~s~~~~ir~~Aa~ 191 (397)
..+.+..++.++.+.+.++..|..|...|..++.......+ +..+ .--..|++.|.++++.+ ..++.
T Consensus 33 ~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~ 111 (462)
T 1ibr_B 33 LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQ 111 (462)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHH
T ss_pred hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHH
Confidence 35667778888888766788899998888888765432111 1111 12234678888888889 99999
Q ss_pred HHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcCC--CHHHHHHHHHHHHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCCCc
Q 015951 192 ILGKASQNN-PLVQKQVLELGALSKLMKMVKSS--FVEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNSSF 267 (397)
Q Consensus 192 vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s~--~~~v~~kAl~ALS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~~~ 267 (397)
+|+.++... |. .. -.+.+|.|++.+.++ +..++..|+.+++.++... +.....+. ..-++.+..++.++..
T Consensus 112 ~i~~ia~~~~~~-~~---w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~ 186 (462)
T 1ibr_B 112 CVAGIACAEIPV-NQ---WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEP 186 (462)
T ss_dssp HHHHHHHHHGGG-TC---CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHhccc-cc---cHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCC
Confidence 999998642 21 00 136899999999988 7889999999999998765 32222222 2366788888887632
Q ss_pred cHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951 268 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 268 d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 333 (397)
+..+|..|+.++.+++... .+..........+++.+...+.+++.+++..++.+|..++...
T Consensus 187 ~~~vr~~a~~~l~~~~~~~----~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~ 248 (462)
T 1ibr_B 187 SNNVKLAATNALLNSLEFT----KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLY 248 (462)
T ss_dssp CHHHHHHHHHHHHHHTTTT----HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHH----HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHH
Confidence 4678999999999876310 0000000111124666677788889999999999999998643
No 64
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=97.89 E-value=1e-05 Score=67.85 Aligned_cols=88 Identities=18% Similarity=0.231 Sum_probs=72.6
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951 170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 249 (397)
Q Consensus 170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f 249 (397)
.++.|+.+|+++++.+|..|+++||.+.. + .+++.|+.++++++..||..|++||+.+- .
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~---------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~--~------- 102 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEPLIKLLEDDSGFVRSGAARSLEQIG--G------- 102 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC--S-------
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC--c-------
Confidence 37899999999999999999999999862 2 35899999999888899999999999873 1
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHH
Q 015951 250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGD 281 (397)
Q Consensus 250 ~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~ 281 (397)
..+++.|..+++++ +..+|..|+.+|..
T Consensus 103 --~~a~~~L~~~l~d~--~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 103 --ERVRAAMEKLAETG--TGFARKVAVNYLET 130 (131)
T ss_dssp --HHHHHHHHHHTTSC--CTHHHHHHHHHGGG
T ss_pred --HHHHHHHHHHHhCC--CHHHHHHHHHHHHh
Confidence 23578889999865 55688888887653
No 65
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.86 E-value=6.4e-05 Score=80.69 Aligned_cols=180 Identities=15% Similarity=0.192 Sum_probs=121.1
Q ss_pred HHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCcHHHHHHhhcC
Q 015951 144 DSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS 222 (397)
Q Consensus 144 ~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp-~~Q~~vl~~g~lp~Ll~LL~s 222 (397)
.|..|...|..+++... ..+.. ..++.+...|+++++.+|..|++++|.++.+.+ ..-...+ ...+|.|+..+.+
T Consensus 344 ~r~~a~~~l~~l~~~~~--~~~~~-~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~-~~~l~~l~~~l~d 419 (876)
T 1qgr_A 344 PCKAAGVCLMLLATCCE--DDIVP-HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKD 419 (876)
T ss_dssp HHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHCc--HhhHH-HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHhCC
Confidence 45566666665554322 11211 345556677888999999999999999998754 3222233 3489999999999
Q ss_pred CCHHHHHHHHHHHHHHhcCChhcH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc----------C
Q 015951 223 SFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN----------M 290 (397)
Q Consensus 223 ~~~~v~~kAl~ALS~LiR~~~~~~--~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~----------~ 290 (397)
++..+|..|+++|+.++...++.. ..++ ...++.|...+.++ .+++..+++++.+++...... .
T Consensus 420 ~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l-~~~l~~l~~~l~~~---~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~ 495 (876)
T 1qgr_A 420 PSVVVRDTAAWTVGRICELLPEAAINDVYL-APLLQCLIEGLSAE---PRVASNVCWAFSSLAEAAYEAADVADDQEEPA 495 (876)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGTSSTTTH-HHHHHHHHHHTTSC---HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHhCchhcccHHHH-HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhhhcccccccccccc
Confidence 889999999999999998765421 1111 24567777778763 578999999999998631000 0
Q ss_pred CCCcchhHHhCCcHHHHHHhccCC---ChHHHHHHHHHHHHHhcCC
Q 015951 291 HKVEPPLFRDRFFLKSVVDLTASA---DLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 291 ~~~~~~~l~~~g~v~~Lv~lL~~~---d~dv~E~aL~aL~~L~~~~ 333 (397)
.....+.+ ..+++.+...+... +..++..++.++..++...
T Consensus 496 ~~~l~~~~--~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~ 539 (876)
T 1qgr_A 496 TYCLSSSF--ELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNS 539 (876)
T ss_dssp CCSSTTTH--HHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTC
T ss_pred chhhhHhH--HHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHC
Confidence 11233333 24677777777654 3578888999998887653
No 66
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.86 E-value=9.6e-05 Score=79.14 Aligned_cols=198 Identities=9% Similarity=0.095 Sum_probs=127.6
Q ss_pred HHHHHHHHhhCCCC-----CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015951 127 LIQIAIDDLNNSTL-----SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 201 (397)
Q Consensus 127 lmk~~i~~L~~~~~-----s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp 201 (397)
++..++..+...+. +...+..|.+.|..++.... ..+.. ..++.+.+.|++++..+|..|++++|.++....
T Consensus 325 il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~~-~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~ 401 (861)
T 2bpt_A 325 VVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHILE-PVLEFVEQNITADNWRNREAAVMAFGSIMDGPD 401 (861)
T ss_dssp HHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGHH-HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred HHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHHH-HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCC
Confidence 44445555554321 12345566666665554322 11111 234555567788999999999999999997642
Q ss_pred -HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH--HHHHhcCcHHHHHHhhcCCCccHHHHHHHHHH
Q 015951 202 -LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAGDLMLQDILGNSSFEIRLHRKAVSL 278 (397)
Q Consensus 202 -~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~--~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~l 278 (397)
..-...+. ..+|.|+..+.++++.+|..++++|+.++...++.. ..+. ..-++.|...+.++ .+++..|+++
T Consensus 402 ~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~-~~~l~~l~~~l~~~---~~v~~~a~~a 476 (861)
T 2bpt_A 402 KVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHL-PGVVQACLIGLQDH---PKVATNCSWT 476 (861)
T ss_dssp HHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTH-HHHHHHHHHHHTSC---HHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHH-HHHHHHHHHHhccC---hHHHHHHHHH
Confidence 32222333 478999999998889999999999999887543210 1111 23467778888753 5789999999
Q ss_pred HHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCC--hHHHHHHHHHHHHHhcCCh
Q 015951 279 VGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD--LDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 279 L~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d--~dv~E~aL~aL~~L~~~~~ 334 (397)
+.+++..-.+...+...+.+ ..+++.+..++...| ..++..++.+|..++...+
T Consensus 477 l~~l~~~~~~~~~~~l~~~~--~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~ 532 (861)
T 2bpt_A 477 IINLVEQLAEATPSPIYNFY--PALVDGLIGAANRIDNEFNARASAFSALTTMVEYAT 532 (861)
T ss_dssp HHHHHHHHSSSSSCGGGGGH--HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhcccccchhhHHHH--HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcc
Confidence 99998631000012233333 346777888887544 7899999999999987643
No 67
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.80 E-value=0.00047 Score=72.77 Aligned_cols=178 Identities=15% Similarity=0.130 Sum_probs=122.3
Q ss_pred HHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 015951 130 IAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLE 209 (397)
Q Consensus 130 ~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~ 209 (397)
++++.+.++ +.+.|....-.+..+.+.- .++.. -.+..+.+-|+++++.+|..|+++||++. ++.. .
T Consensus 74 ~vik~~~s~--~~~~Krl~Yl~~~~~~~~~---~e~~~-l~in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~~----~- 140 (618)
T 1w63_A 74 ECLKLIASQ--KFTDKRIGYLGAMLLLDER---QDVHL-LMTNCIKNDLNHSTQFVQGLALCTLGCMG--SSEM----C- 140 (618)
T ss_dssp HHHHHHHSS--SHHHHHHHHHHHHHHCCCC---HHHHH-HHHHHHHHHHSCSSSHHHHHHHHHHHHHC--CHHH----H-
T ss_pred HHHHHHcCC--chHHHHHHHHHHHHHhCCC---cHHHH-HHHHHHHHhcCCCCHhHHHHHHHHHHhcC--CHHH----H-
Confidence 344444433 3455555544555555431 22221 24556777889999999999999999997 3432 2
Q ss_pred cCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015951 210 LGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 289 (397)
Q Consensus 210 ~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~ 289 (397)
...+|.+.+++.+.++.+|.+|+.|+..+.+.+|.... +-++.+..+|.++ +..++..|+.++..++..
T Consensus 141 ~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~--d~~V~~~Al~~L~~i~~~---- 209 (618)
T 1w63_A 141 RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEK--NHGVLHTSVVLLTEMCER---- 209 (618)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCC--CHHHHHHHHHHHHHHCCS----
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCC--CHhHHHHHHHHHHHHHHh----
Confidence 24689999999999999999999999999998886554 4456677788775 667899999999999842
Q ss_pred CCCCcchhHHhCCcHHHHHHhccC---------------CChHHHHHHHHHHHHHhcCCh
Q 015951 290 MHKVEPPLFRDRFFLKSVVDLTAS---------------ADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 290 ~~~~~~~~l~~~g~v~~Lv~lL~~---------------~d~dv~E~aL~aL~~L~~~~~ 334 (397)
+++....+. .+++.++.+|.. .++-.|-.++.+|..+....+
T Consensus 210 -~~~~~~~~~--~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~ 266 (618)
T 1w63_A 210 -SPDMLAHFR--KLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDD 266 (618)
T ss_dssp -HHHHHHHHH--TTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCH
T ss_pred -ChHHHHHHH--HHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCH
Confidence 222222232 466767666542 477788888888888876543
No 68
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=97.74 E-value=5.7e-05 Score=80.92 Aligned_cols=197 Identities=13% Similarity=0.155 Sum_probs=131.7
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchh-HHHhcCCHHHHHHhcCC---------------CCHHHHHH
Q 015951 125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNAN-DLSKLGGLSVLVGQLNH---------------PDTDIRKI 188 (397)
Q Consensus 125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~-~~~~lGGl~~Li~lL~s---------------~~~~ir~~ 188 (397)
..+|..++..+.+.+.+.+.+..+++.+..++....... .+. ...+|.++..|.. ....+|..
T Consensus 497 ~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~ 575 (861)
T 2bpt_A 497 PALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSN 575 (861)
T ss_dssp HHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHH
Confidence 356667777776554444567778888887776544321 111 1356667766542 24678999
Q ss_pred HHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCH-HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCc
Q 015951 189 SAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFV-EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSF 267 (397)
Q Consensus 189 Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~-~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~ 267 (397)
++.+|+++++..+..-..+. ...++.++.++++.+. .++..++.++++++.........++ ..-++.|...+.++
T Consensus 576 ~~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l-~~i~~~l~~~l~~~-- 651 (861)
T 2bpt_A 576 ILTVLAAVIRKSPSSVEPVA-DMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL-ETFSPYLLKALNQV-- 651 (861)
T ss_dssp HHHHHHHHHHHCGGGTGGGH-HHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH-HHHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHhhhhhHHHH-HHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHHHhccc--
Confidence 99999999986553101111 1467888888988766 7899999999999876544333333 23677888888754
Q ss_pred cHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCC--hHHHHHHHHHHHHHhcC
Q 015951 268 EIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASAD--LDLQEKALAAIKNLLQL 332 (397)
Q Consensus 268 d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d--~dv~E~aL~aL~~L~~~ 332 (397)
+..++..++.++.+++.. .++...+.+ ..+++.+...+.+++ .++++.++.++..++..
T Consensus 652 ~~~vr~~a~~~l~~l~~~----~~~~~~~~~--~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~ 712 (861)
T 2bpt_A 652 DSPVSITAVGFIADISNS----LEEDFRRYS--DAMMNVLAQMISNPNARRELKPAVLSVFGDIASN 712 (861)
T ss_dssp TSHHHHHHHHHHHHHHHH----TGGGGHHHH--HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHH----hchhccchH--HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHH
Confidence 456899999999999863 222333332 356677777777653 88999999999998864
No 69
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=97.70 E-value=0.00083 Score=75.74 Aligned_cols=200 Identities=14% Similarity=0.125 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHH
Q 015951 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLV 203 (397)
Q Consensus 124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~ 203 (397)
...++..+++.+.+ .+.+.|..|+..|..+++.... ..+. ..++.|+..|.++++.+|..|+.+|+.++..-+.-
T Consensus 46 ~~~il~~Ll~~L~d--~~~~vR~~A~~~L~~l~~~~~~-~~~~--~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~ 120 (1230)
T 1u6g_C 46 ERKVVKMILKLLED--KNGEVQNLAVKCLGPLVSKVKE-YQVE--TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPA 120 (1230)
T ss_dssp HHHHHHHHHHHTTC--SSHHHHHHHHHHHHHHHTTSCH-HHHH--HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC--
T ss_pred HHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHHHhCCH-HHHH--HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCc
Confidence 34677778888874 3678888999999988876543 2121 24667778888899999999999999999754422
Q ss_pred ------HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015951 204 ------QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 276 (397)
Q Consensus 204 ------Q~~vl~~g~lp~Ll~LL~-s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~ 276 (397)
+.... ...+|.|+..+. +++..++..|+.+++.++..++.....+. ..-++.|...|.++ +..+|..|+
T Consensus 121 ~~~~~~~~~~~-~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~-~~ll~~l~~~L~~~--~~~vR~~a~ 196 (1230)
T 1u6g_C 121 SSGSALAANVC-KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFH-PSILTCLLPQLTSP--RLAVRKRTI 196 (1230)
T ss_dssp ---CCTHHHHH-HHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTH-HHHHHHHGGGGGCS--SHHHHHHHH
T ss_pred ccccchHHHHH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHHH-HHHHHHHHHHHcCC--cHHHHHHHH
Confidence 22222 247999999998 46788999999999999875543222221 33556777777765 457899999
Q ss_pred HHHHHHhhchhc---------------cC-CCCcch---------------hHH--hCCcHHHHHHhccCCChHHHHHHH
Q 015951 277 SLVGDLAKCQLE---------------NM-HKVEPP---------------LFR--DRFFLKSVVDLTASADLDLQEKAL 323 (397)
Q Consensus 277 ~lL~~L~~~~l~---------------~~-~~~~~~---------------~l~--~~g~v~~Lv~lL~~~d~dv~E~aL 323 (397)
.++..++...-+ .. ++..+. .+. -..+++.+...+..+++++++.++
T Consensus 197 ~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~ 276 (1230)
T 1u6g_C 197 IALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCI 276 (1230)
T ss_dssp HHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence 999888752100 00 001110 000 034566666777777889999999
Q ss_pred HHHHHHhcC
Q 015951 324 AAIKNLLQL 332 (397)
Q Consensus 324 ~aL~~L~~~ 332 (397)
.++..++..
T Consensus 277 ~~l~~l~~~ 285 (1230)
T 1u6g_C 277 QAFESFVRR 285 (1230)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHH
Confidence 999988875
No 70
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=97.68 E-value=0.00064 Score=71.70 Aligned_cols=169 Identities=11% Similarity=-0.008 Sum_probs=129.5
Q ss_pred HhhCCCCCHHHHHHHHHHHHhcc-CCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCc
Q 015951 134 DLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGA 212 (397)
Q Consensus 134 ~L~~~~~s~e~k~~AL~~L~~Lv-e~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~ 212 (397)
.|++++ ...|..++..|-++. ...|. .-|+..+++++.+++.++|..+.-.+...+..+|+.-. -+
T Consensus 42 ~l~~~~--~~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~~e~~~-----l~ 108 (618)
T 1w63_A 42 SFREED--NTYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHL-----LM 108 (618)
T ss_dssp HHTTTC--TTTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSSSHHHHHHHHHHHHHHCCCCHHHHH-----HH
T ss_pred HhhCCC--HHHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCCchHHHHHHHHHHHHHhCCCcHHHH-----HH
Confidence 555543 356777777777643 23332 23888889999999999999999999999988875322 25
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015951 213 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 292 (397)
Q Consensus 213 lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~ 292 (397)
+..|.+-+.++++.+|.-|+.+||++. .+. +. ..-++.+..+|.++ ++.+|++|+.++..+... ++
T Consensus 109 in~l~kDL~~~n~~vr~lAL~~L~~i~--~~~----~~-~~l~~~l~~~L~~~--~~~VRk~A~~al~~l~~~-----~p 174 (618)
T 1w63_A 109 TNCIKNDLNHSTQFVQGLALCTLGCMG--SSE----MC-RDLAGEVEKLLKTS--NSYLRKKAALCAVHVIRK-----VP 174 (618)
T ss_dssp HHHHHHHHSCSSSHHHHHHHHHHHHHC--CHH----HH-HHHHHHHHHHHHSC--CHHHHHHHHHHHHHHHHH-----CG
T ss_pred HHHHHHhcCCCCHhHHHHHHHHHHhcC--CHH----HH-HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH-----Ch
Confidence 677888888888999999999999985 232 21 24567888889876 678999999999999862 34
Q ss_pred CcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951 293 VEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 293 ~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 334 (397)
+.. .++++.+..+|...|+.++..|+.+|..+....+
T Consensus 175 ~~v-----~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~ 211 (618)
T 1w63_A 175 ELM-----EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSP 211 (618)
T ss_dssp GGG-----GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHH
T ss_pred HHH-----HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhCh
Confidence 332 2688888999999999999999999999987654
No 71
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=97.66 E-value=0.00064 Score=62.41 Aligned_cols=146 Identities=8% Similarity=0.108 Sum_probs=109.5
Q ss_pred HHHHHHHHHHhh-CCCCCHHHHHHHHHHHHhccCCCCchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015951 125 AQLIQIAIDDLN-NSTLSLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 201 (397)
Q Consensus 125 ~~lmk~~i~~L~-~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l--GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp 201 (397)
.+++..+...+. ++ ....+..|+..+..++.... ..|... .-+|.|+..+.++++.+|..|+.+|.+++.+.+
T Consensus 55 ~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~--~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~ 130 (242)
T 2qk2_A 55 GALVSALKKVITKDS--NVVLVAMAGKCLALLAKGLA--KRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTS 130 (242)
T ss_dssp HHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHG--GGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC
Confidence 355666666664 43 56677888888888885432 233332 368888999999999999999999999998654
Q ss_pred HHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc--HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015951 202 LVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG--QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLV 279 (397)
Q Consensus 202 ~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~--~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL 279 (397)
.. ..+|.|+..+++.+..+|..++..|+.++..+.+. ....+ ..-++.|..++.++ +.++|..|..++
T Consensus 131 -~~------~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l-~~l~p~l~~~l~D~--~~~VR~~A~~~l 200 (242)
T 2qk2_A 131 -LE------AQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL-KLLTTSLVKTLNEP--DPTVRDSSAEAL 200 (242)
T ss_dssp -HH------HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH-HHHHHHHHHHHTSS--CHHHHHHHHHHH
T ss_pred -HH------HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCCCccHHHH-HHHHHHHHHHhcCC--ChHHHHHHHHHH
Confidence 11 36888999999988999999999999977665322 12223 35688899999876 567999999999
Q ss_pred HHHhh
Q 015951 280 GDLAK 284 (397)
Q Consensus 280 ~~L~~ 284 (397)
..++.
T Consensus 201 ~~l~~ 205 (242)
T 2qk2_A 201 GTLIK 205 (242)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 72
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.65 E-value=0.0034 Score=66.36 Aligned_cols=168 Identities=16% Similarity=0.037 Sum_probs=127.1
Q ss_pred CCCHHHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH
Q 015951 139 TLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM 217 (397)
Q Consensus 139 ~~s~e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll 217 (397)
..+...|..++..+-++.- ..|. ..|+..+++++.+++..+|..+.-.+...+..+|+.-.. ++..+.
T Consensus 49 ~~~~~~k~~~l~Kli~l~~~G~d~------s~~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~~e~~~L-----~iN~l~ 117 (621)
T 2vgl_A 49 ALDGYSKKKYVCKLLFIFLLGHDI------DFGHMEAVNLLSSNRYTEKQIGYLFISVLVNSNSELIRL-----INNAIK 117 (621)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSCCC------CSCHHHHHHGGGCSCHHHHHHHHHHHHHSCCCCHHHHHH-----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCC------chhHHHHHHHhcCCCHHHHHHHHHHHHHHccCCcHHHHH-----HHHHHH
Confidence 3466777777777766431 2221 248999999999999999999999999999988854322 356677
Q ss_pred HhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh--cCCCccHHHHHHHHHHHHHHhhchhccCCCCcc
Q 015951 218 KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL--GNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEP 295 (397)
Q Consensus 218 ~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL--~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~ 295 (397)
+=+.++++-+|.-|+.+||++. .+.-.+ .-.+.+..++ .+. ++.+|++|+.++..+... +|+..
T Consensus 118 kDl~~~n~~ir~lALr~L~~i~--~~e~~~-----~l~~~v~~~l~~~d~--~~~VRK~A~~al~kl~~~-----~p~~~ 183 (621)
T 2vgl_A 118 NDLASRNPTFMGLALHCIANVG--SREMAE-----AFAGEIPKILVAGDT--MDSVKQSAALCLLRLYRT-----SPDLV 183 (621)
T ss_dssp HHHHSCCHHHHHHHHHHHHHHC--CHHHHH-----HHTTHHHHHHHCSSS--CHHHHHHHHHHHHHHHHH-----CGGGC
T ss_pred HhcCCCCHHHHHHHHHHhhccC--CHHHHH-----HHHHHHHHHHhCCCC--CHHHHHHHHHHHHHHHHh-----Chhhc
Confidence 7777888899999999999983 233222 3456777888 544 678999999999999862 33322
Q ss_pred hhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCCh
Q 015951 296 PLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRT 334 (397)
Q Consensus 296 ~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~ 334 (397)
...++++.+..+|...|+.|+..|+.++..+....+
T Consensus 184 ---~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~ 219 (621)
T 2vgl_A 184 ---PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP 219 (621)
T ss_dssp ---CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred ---CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence 225899999999999999999999999999987653
No 73
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=97.63 E-value=0.00066 Score=63.49 Aligned_cols=149 Identities=14% Similarity=0.200 Sum_probs=118.4
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951 170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 249 (397)
Q Consensus 170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f 249 (397)
-+..|+.+|...++.++.+|..+|+.+...-|..-....=...+|.++.++.++++.+..+|+-+|..++.+.|.....|
T Consensus 34 ~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~y 113 (265)
T 3b2a_A 34 ALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKTF 113 (265)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHHH
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHHH
Confidence 35566778888899999999999999998754444444434589999999999999999999999999999999888888
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHH
Q 015951 250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNL 329 (397)
Q Consensus 250 ~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L 329 (397)
.. -...|..++.++ +.-++..|+-.+..|-- .. ...+++..+..++.+.|..++..++.++.++
T Consensus 114 ~K--l~~aL~dlik~~--~~il~~eaae~Lgklkv-----~~-------~~~~V~~~l~sLl~Skd~~vK~agl~~L~ei 177 (265)
T 3b2a_A 114 LK--AAKTLVSLLESP--DDMMRIETIDVLSKLQP-----LE-------DSKLVRTYINELVVSPDLYTKVAGFCLFLNM 177 (265)
T ss_dssp HH--HHHHHHHHTTSC--CHHHHHHHHHHHHHCCB-----SC-------CCHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHHHhcCC--CchHHHHHHHHhCcCCc-----cc-------chHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 64 356778888866 33478888888887721 11 1235677888889999999999999999999
Q ss_pred hcCCh
Q 015951 330 LQLRT 334 (397)
Q Consensus 330 ~~~~~ 334 (397)
+..++
T Consensus 178 a~~S~ 182 (265)
T 3b2a_A 178 LNSSA 182 (265)
T ss_dssp GGGCS
T ss_pred hcccC
Confidence 98653
No 74
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=97.61 E-value=0.0011 Score=71.13 Aligned_cols=200 Identities=15% Similarity=0.085 Sum_probs=134.2
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCch--hHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015951 125 AQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNA--NDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 202 (397)
Q Consensus 125 ~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA--~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~ 202 (397)
..++..++..+.+++.+.+.+..|+..|..++..+... .......-++.+..++.++++++|..|+.+++.++...+.
T Consensus 171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~ 250 (876)
T 1qgr_A 171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ 250 (876)
T ss_dssp HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 44556666777766546778888999998877643311 1111111356666778888999999999999999988775
Q ss_pred HHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc-----------------HHHHHh---cCcHHHHHHhh
Q 015951 203 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG-----------------QEMFYV---EAGDLMLQDIL 262 (397)
Q Consensus 203 ~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~-----------------~~~f~~---~gGi~~L~~lL 262 (397)
.-...+....++.++..+.+.++.++..|+..++.+++..... ...+.. ..-++.+...+
T Consensus 251 ~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l 330 (876)
T 1qgr_A 251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL 330 (876)
T ss_dssp GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHh
Confidence 4333444468899999888888899999999999887642100 000110 12345566666
Q ss_pred cCC-----CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951 263 GNS-----SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 263 ~s~-----~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 333 (397)
... +.+.++|..|+.++..++..- .+ .+. ..+++.+...+.+++..+++.++.+|..++...
T Consensus 331 ~~~~~d~~~~~~~~r~~a~~~l~~l~~~~----~~----~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~ 397 (876)
T 1qgr_A 331 TKQDENDDDDDWNPCKAAGVCLMLLATCC----ED----DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGP 397 (876)
T ss_dssp TCCCSSCCTTCCCHHHHHHHHHHHHHHHH----GG----GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSS
T ss_pred hcccccccccccHHHHHHHHHHHHHHHHC----cH----hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCC
Confidence 421 124468889999999988531 11 122 246677777888889999999999999998753
No 75
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}
Probab=97.39 E-value=0.0061 Score=59.73 Aligned_cols=154 Identities=14% Similarity=0.093 Sum_probs=119.2
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc
Q 015951 173 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 252 (397)
Q Consensus 173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~ 252 (397)
.+++-|.+++..-+..|..-|..+.|..+..-..|++.+|+..|+++..+.+.+.+.-++.|++++.- |..+...++++
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~gvvs~ 200 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-ccccccchhCC
Confidence 44555556777788999999999887778888889999999999999999888999999999999864 66777777753
Q ss_pred -CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh----------CCcHHHHHHhcc---CCChHH
Q 015951 253 -AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD----------RFFLKSVVDLTA---SADLDL 318 (397)
Q Consensus 253 -gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~----------~g~v~~Lv~lL~---~~d~dv 318 (397)
..+..|..++.+. +..+.+.|..+|-.++.. .+.....+.+ .-....|+.+|. +.|.++
T Consensus 201 ~~fI~~lyslv~s~--~~~V~k~AL~LL~v~V~~-----se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~el 273 (339)
T 3dad_A 201 SDTIQWLYTLCASL--SRLVVKTALKLLLVFVEY-----SENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPEL 273 (339)
T ss_dssp HHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHH
T ss_pred HHHHHHHHHHHcCc--cHHHHHHHHHHHHHHHcc-----CcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHH
Confidence 5788888888864 667888899999999863 2222222221 124678899997 679999
Q ss_pred HHHHHHHHHHHhcCCh
Q 015951 319 QEKALAAIKNLLQLRT 334 (397)
Q Consensus 319 ~E~aL~aL~~L~~~~~ 334 (397)
+-+|+..|-.+....+
T Consensus 274 q~~amtLIN~lL~~ap 289 (339)
T 3dad_A 274 LVYTVTLINKTLAALP 289 (339)
T ss_dssp HHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhcCC
Confidence 9999988887776644
No 76
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=97.38 E-value=0.0087 Score=54.24 Aligned_cols=140 Identities=13% Similarity=0.158 Sum_probs=104.0
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHH
Q 015951 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLML 258 (397)
Q Consensus 179 ~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L 258 (397)
+|..-++-..-++.+|.++.-+|+.-. +.+|.|..-..-+++..+..-.|+|.-+.|.||.....+ +.-+
T Consensus 80 ksEaIpltqeIa~a~G~la~i~Pe~v~-----~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v-----~rdi 149 (253)
T 2db0_A 80 KSEAIPLTQEIAKAFGQMAKEKPELVK-----SMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASI-----VRDF 149 (253)
T ss_dssp HCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHH-----HHHH
T ss_pred hcccCchHHHHHHHHhHHHHhCHHHHH-----hhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHH-----HHHH
Confidence 455666767778888888888886443 457888888888888999999999999999998755443 3455
Q ss_pred HHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHHH
Q 015951 259 QDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEAL 338 (397)
Q Consensus 259 ~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r~ 338 (397)
..++.|++. .=|.-|..+++.|..+ ....+ .-+++.|..+|...|.-++..|..+|.+++..++..|+
T Consensus 150 ~smltskd~--~Dkl~aLnFi~alGen--------~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRk 217 (253)
T 2db0_A 150 MSMLSSKNR--EDKLTALNFIEAMGEN--------SFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRK 217 (253)
T ss_dssp HHHTSCSSH--HHHHHHHHHHHTCCTT--------THHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHhcCCCh--HHHHHHHHHHHHHhcc--------Ccccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHH
Confidence 667777632 3455676677666432 22222 35789999999999999999999999999998876665
Q ss_pred HH
Q 015951 339 VL 340 (397)
Q Consensus 339 ~~ 340 (397)
.+
T Consensus 218 ii 219 (253)
T 2db0_A 218 VV 219 (253)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 77
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=97.26 E-value=0.016 Score=57.34 Aligned_cols=185 Identities=10% Similarity=0.069 Sum_probs=131.4
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccC-CCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 015951 122 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVE-PIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN 200 (397)
Q Consensus 122 ~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve-~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN 200 (397)
.+....+++ .+.++++..++.-...++..+.++.- -.+.....+ ...+..++.++.+++..+|...--.+-.++..+
T Consensus 22 ~~k~~v~qe-~r~fn~~~~~~~kc~~~l~kll~l~~~G~~f~~~e~-t~lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~ 99 (355)
T 3tjz_B 22 LEKSAVLQE-ARVFNETPINPRKCAHILTKILYLINQGEHLGTTEA-TEAFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA 99 (355)
T ss_dssp CCHHHHHHH-GGGTTSSSCCHHHHHHHHHHHHHHHHHTCCCCHHHH-HHHHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS
T ss_pred chHHHHHHH-HHHhcCCCCcHHHHHHHHHHHHHHHHCCCCCchhHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH
Confidence 455556666 35666666665544456666666442 222222111 235677788999999999999999999888763
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015951 201 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 280 (397)
Q Consensus 201 p~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~ 280 (397)
++.+ =+...|.+=+.++++-+|..|+.+++++.- +.-.+. -.+.+.+++.+. ++.+|++|+.+..
T Consensus 100 ---~e~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~-----l~~~lk~~L~d~--~pyVRk~A~l~~~ 164 (355)
T 3tjz_B 100 ---EDVI---IVTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA-----IERYMKQAIVDK--VPSVSSSALVSSL 164 (355)
T ss_dssp ---SCGG---GGHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHH
T ss_pred ---HHHH---HHHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH-----HHHHHHHHcCCC--CHHHHHHHHHHHH
Confidence 2322 267788888888888899999999999842 232232 345688888887 6679999999999
Q ss_pred HHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951 281 DLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 281 ~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 333 (397)
.|.. ..|+ +++ +|+..+-+++...++-++-+|+.+|..+....
T Consensus 165 kL~~-----~~pe----~v~-~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d 207 (355)
T 3tjz_B 165 HLLK-----CSFD----VVK-RWVNEAQEAASSDNIMVQYHALGLLYHVRKND 207 (355)
T ss_dssp HHTT-----TCHH----HHH-TTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHhc-----cCHH----HHH-HHHHHHHHHhcCCCccHHHHHHHHHHHHHhhc
Confidence 9974 1222 333 68999999999999999999999999988754
No 78
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=97.20 E-value=0.0084 Score=56.31 Aligned_cols=181 Identities=12% Similarity=0.016 Sum_probs=118.7
Q ss_pred CHHHHHHHHHHHHhccCCCC--ch--hHHHhcCCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcCChH-----HHHHHHHc
Q 015951 141 SLEDSQRALQELLILVEPID--NA--NDLSKLGGLSVLV-GQLNHPDTDIRKISAWILGKASQNNPL-----VQKQVLEL 210 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iD--nA--~~~~~lGGl~~Li-~lL~s~~~~ir~~Aa~vLg~~aqNNp~-----~Q~~vl~~ 210 (397)
.=..|..|++.|..++.... .. ..+...+.+..++ ..+..+|..++..|+.+|..++..-.. ......-.
T Consensus 22 ~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (278)
T 4ffb_C 22 LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLIS 101 (278)
T ss_dssp SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHH
Confidence 45678899999988775432 11 1222345544444 678899999999999999999864221 11112223
Q ss_pred CcHHHHHH-hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhcc
Q 015951 211 GALSKLMK-MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLEN 289 (397)
Q Consensus 211 g~lp~Ll~-LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~ 289 (397)
..+|.|+. .+.+....++..|+.++..++....+... + ++.+...+++. +++++..++..|..+..+.
T Consensus 102 ~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-~-----~e~l~~~l~~K--npkv~~~~l~~l~~~l~~f--- 170 (278)
T 4ffb_C 102 TWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-S-----VELVIPFFEKK--LPKLIAAAANCVYELMAAF--- 170 (278)
T ss_dssp HHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-H-----HHHHGGGGGCS--CHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-H-----HHHHHHHHhcc--CHHHHHHHHHHHHHHHHHh---
Confidence 46888885 57787888898998888877654322211 1 35566667776 6789999999999887632
Q ss_pred CCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 290 MHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 290 ~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
+.........-..+++.+..++.+.|.+||+.|..++..+...
T Consensus 171 g~~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~ 213 (278)
T 4ffb_C 171 GLTNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKV 213 (278)
T ss_dssp TTTTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC
T ss_pred CCCcCCchhHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHH
Confidence 1111111111124566778889999999999999999998865
No 79
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=97.08 E-value=0.0029 Score=66.91 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=81.6
Q ss_pred CHHHHHHHHHH----HhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhc--CCCCHHHHHHHHHHHHHH
Q 015951 123 SDAQLIQIAID----DLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL--NHPDTDIRKISAWILGKA 196 (397)
Q Consensus 123 ~d~~lmk~~i~----~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL--~s~~~~ir~~Aa~vLg~~ 196 (397)
.+.+.+.-++. .+.++ ++-.+..||..|..+.. .+.+. ...+.+.++| .++++-||..|+-++.++
T Consensus 104 ~~~e~~~L~iN~l~kDl~~~--n~~ir~lALr~L~~i~~-~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl 175 (621)
T 2vgl_A 104 SNSELIRLINNAIKNDLASR--NPTFMGLALHCIANVGS-REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRL 175 (621)
T ss_dssp CCHHHHHHHHHHHHHHHHSC--CHHHHHHHHHHHHHHCC-HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhcCCC--CHHHHHHHHHHhhccCC-HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 34454444443 34433 45567778888887643 22222 2457778899 889999999999999999
Q ss_pred hcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh
Q 015951 197 SQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA 244 (397)
Q Consensus 197 aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~ 244 (397)
.+.+|..-. ..++++.|.++|.+.++.|+..|+.++..++.+++.
T Consensus 176 ~~~~p~~~~---~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~ 220 (621)
T 2vgl_A 176 YRTSPDLVP---MGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE 220 (621)
T ss_dssp HHHCGGGCC---CCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHhChhhcC---chhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH
Confidence 998875332 247899999999988899999999999999887765
No 80
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=97.06 E-value=0.011 Score=55.04 Aligned_cols=172 Identities=10% Similarity=0.121 Sum_probs=117.7
Q ss_pred HhHHHHHHHHH-hcCC-------CCH-HHHHHHHHHHh-hCCCCCHHHHHHHHHHHHhccCCCC--chh-HHHhcCCHHH
Q 015951 107 KRQMEIKELME-KLKT-------PSD-AQLIQIAIDDL-NNSTLSLEDSQRALQELLILVEPID--NAN-DLSKLGGLSV 173 (397)
Q Consensus 107 ~r~~~L~ea~~-~~~~-------~~d-~~lmk~~i~~L-~~~~~s~e~k~~AL~~L~~Lve~iD--nA~-~~~~lGGl~~ 173 (397)
+|++-+.+... .+.+ ..+ .+++..+...+ .++ ....+..|+..|..+++... .-. .+.. -.+|+
T Consensus 32 eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~--n~~v~~~A~~al~~la~~l~~~~f~~~y~~-~llp~ 108 (249)
T 2qk1_A 32 DRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDA--NIQAVALAAQSVELICDKLKTPGFSKDYVS-LVFTP 108 (249)
T ss_dssp HHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHCTTTSCHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHhcccccccHHHHH-HHHHH
Confidence 46666666555 3321 223 45666666777 343 45567788888888775332 111 2222 25889
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHH-HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH---
Q 015951 174 LVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV-LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF--- 249 (397)
Q Consensus 174 Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~v-l~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f--- 249 (397)
++..+....+.||..|..++-+++.+-+.....- ++ ..++.|+..+++.+..+|..++..|+.++...+.....|
T Consensus 109 ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~-~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~ 187 (249)
T 2qk1_A 109 LLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNE-DMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRY 187 (249)
T ss_dssp HHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTH-HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHH-HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence 9999999999999999999999987531111000 11 267889999999889999999999999998766432233
Q ss_pred HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 250 YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 250 ~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
+.-.-++.|..++.+. +..+|..|..++..++.
T Consensus 188 l~~~iip~l~~~l~D~--~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 188 LKDEVVPIVIQIVNDT--QPAIRTIGFESFAILIK 220 (249)
T ss_dssp HTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHH
Confidence 2246788999999876 66799999999999985
No 81
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=96.93 E-value=0.046 Score=54.48 Aligned_cols=167 Identities=17% Similarity=0.120 Sum_probs=115.4
Q ss_pred HHHHHHHHhcc--CCCCchhHHHhcCCHHHHHHhcC-----------CCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cC
Q 015951 146 QRALQELLILV--EPIDNANDLSKLGGLSVLVGQLN-----------HPDTDIRKISAWILGKASQNNPLVQKQVLE-LG 211 (397)
Q Consensus 146 ~~AL~~L~~Lv--e~iDnA~~~~~lGGl~~Li~lL~-----------s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~-~g 211 (397)
...|+.|.-.+ .+++.-..|+ .+|+..|+..|. ..+..++.....||..+. ||..--..++. ..
T Consensus 85 ~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm-N~~~G~~~vl~~~~ 162 (383)
T 3eg5_B 85 LSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEE 162 (383)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-SSHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-cchhhHHHHHcChH
Confidence 34567776644 4567778998 899999998874 124578889999999998 55555555554 56
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hc-HHHHH----------hcCcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015951 212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-AG-QEMFY----------VEAGDLMLQDILGNSSFEIRLHRKAVSLV 279 (397)
Q Consensus 212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~-~~-~~~f~----------~~gGi~~L~~lL~s~~~d~klr~kA~~lL 279 (397)
++..|...+.+....++..|+--|+.++.... .+ ...++ +..-+..++..|.+. .+..++..++.+|
T Consensus 163 ~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~-~~~e~~~~~m~lI 241 (383)
T 3eg5_B 163 GILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLI 241 (383)
T ss_dssp HHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc-CcHHHHHHHHHHH
Confidence 89999999999888888888888877665432 22 22222 234588889999864 3667888999999
Q ss_pred HHHhhchhccCCCC------cchhHHhCCcHHHHHHhccCCChHHHH
Q 015951 280 GDLAKCQLENMHKV------EPPLFRDRFFLKSVVDLTASADLDLQE 320 (397)
Q Consensus 280 ~~L~~~~l~~~~~~------~~~~l~~~g~v~~Lv~lL~~~d~dv~E 320 (397)
..++.+ .++ .+..|...|+.+.+..+=...++++..
T Consensus 242 N~li~~-----~~dl~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 242 NALITP-----AEELDFRVHIRSELMRLGLHQVLQELREIENEDMKV 283 (383)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred HHHHcC-----CCCHHHHHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence 999863 232 345567788887777643334544443
No 82
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=96.78 E-value=0.059 Score=55.14 Aligned_cols=242 Identities=13% Similarity=0.104 Sum_probs=141.1
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCC----CchhHHHhcCCHH-HHH-HhcCCCCHHHHHHHHHHHHHHhcC
Q 015951 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPI----DNANDLSKLGGLS-VLV-GQLNHPDTDIRKISAWILGKASQN 199 (397)
Q Consensus 126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~i----DnA~~~~~lGGl~-~Li-~lL~s~~~~ir~~Aa~vLg~~aqN 199 (397)
...+-.+..+.... ..+-..-.|--+.+++... ..+.-|++..... .+. .++..+++-..-.|+.+++-++++
T Consensus 77 ~~~~~~l~lL~~~~-~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 77 KTLIPLIHLLSTSD-NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp TTHHHHHHHHHSCC-CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred hHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 34566777776643 4455666676666766542 2234555554332 233 455555666677888888888776
Q ss_pred ChHHHHHHHHcCcHH--HHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--HHHHHHhhc----C------
Q 015951 200 NPLVQKQVLELGALS--KLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--DLMLQDILG----N------ 264 (397)
Q Consensus 200 Np~~Q~~vl~~g~lp--~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gG--i~~L~~lL~----s------ 264 (397)
++...+..-. .+. -++..|.+ ++...+--++.+++.++|. +..+..|.+++| ++.+..++. +
T Consensus 156 ~~~~~~~l~~--l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~ 232 (480)
T 1ho8_A 156 GLHNVKLVEK--LLKNNNLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI 232 (480)
T ss_dssp TTCCHHHHHH--HHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred CCccHhHHHH--HhhhHHHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence 6543222111 122 34445554 2344455788899999885 566788888766 445543322 1
Q ss_pred -----CCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcH--HHHHHhccC-CChHHHHHHHHHHHHHhcCChHH
Q 015951 265 -----SSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFL--KSVVDLTAS-ADLDLQEKALAAIKNLLQLRTTE 336 (397)
Q Consensus 265 -----~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v--~~Lv~lL~~-~d~dv~E~aL~aL~~L~~~~~~~ 336 (397)
++....++-.++++++-|+. ++...+.+...++. ..|+..++. .-..+..-++.++.||...+...
T Consensus 233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF------~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~ 306 (480)
T 1ho8_A 233 VATNSNHLGIQLQYHSLLLIWLLTF------NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQ 306 (480)
T ss_dssp ------CCHHHHHHHHHHHHHHHTT------SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTT
T ss_pred ccccCCCccHHHHHHHHHHHHHHHc------CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchh
Confidence 11246678999999998886 34566667777654 566666654 36788889999999999875211
Q ss_pred -----HHHHHhcCChHHHHHHHHHHhHHhhhhhhhhhhHHhHHHHHHHHHHHH
Q 015951 337 -----ALVLKDFCGLDTALERLRQQLQEVMLEEDQRDYAMDVEALRREVELIF 384 (397)
Q Consensus 337 -----r~~~~~~~gL~~~L~~Lr~~~~~l~~~e~~~~~~~~l~~~~~e~~~~~ 384 (397)
++.+- .+++.+.+..|..+ -..|+ |-.+|++.|.+..+..+
T Consensus 307 ~~~~~~~~~~-~~~~l~~l~~L~~r---k~~De---dl~edl~~L~e~L~~~~ 352 (480)
T 1ho8_A 307 HKKVIKQLLL-LGNALPTVQSLSER---KYSDE---ELRQDISNLKEILENEY 352 (480)
T ss_dssp HHHHHHHHHH-HHCHHHHHHHHHSS---CCSSH---HHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHH-HccchHHHHHHhhC---CCCcH---HHHHHHHHHHHHHHHHH
Confidence 11221 23444555544333 22333 34556666666665554
No 83
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=96.58 E-value=0.03 Score=52.89 Aligned_cols=207 Identities=15% Similarity=0.112 Sum_probs=135.9
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCC-chhHHHh-cCCHHHHHHh-------cCCCC-----HHHHHHHHH
Q 015951 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPID-NANDLSK-LGGLSVLVGQ-------LNHPD-----TDIRKISAW 191 (397)
Q Consensus 126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iD-nA~~~~~-lGGl~~Li~l-------L~s~~-----~~ir~~Aa~ 191 (397)
+.|.+.+..|.++ +.|+.|+.+|..--++.+ .|-.+-. -|-+..|++- |+.+. ..=-++|..
T Consensus 3 ~~i~qli~~L~~p----~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLa 78 (268)
T 2fv2_A 3 EKIYQWINELSSP----ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALA 78 (268)
T ss_dssp HHHHHHHHHTSST----TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCc----hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHH
Confidence 4566777777766 469999999998777653 4444433 4556666542 22221 122356666
Q ss_pred HHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhcCC-hhcHHHHHhcCcHHHHHHhhcCC
Q 015951 192 ILGKASQNNPLVQKQVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIRNN-LAGQEMFYVEAGDLMLQDILGNS 265 (397)
Q Consensus 192 vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~-----~~v~~kAl~ALS~LiR~~-~~~~~~f~~~gGi~~L~~lL~s~ 265 (397)
.+..+|+ +|+.+..|++.+..-.|.-+|+..+ +-+|-.+++-|+++++.. +....-+.+.+-++...+.+..+
T Consensus 79 LlQcvAs-hpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G 157 (268)
T 2fv2_A 79 LLQCVAS-HPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG 157 (268)
T ss_dssp HHHHHHH-CTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS
T ss_pred HHHHHHc-CcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc
Confidence 6777775 7899999999987666666676544 246889999999999875 44455556788999999999977
Q ss_pred CccHHHHHHHHHHHHHHhhch--hccCCCCcchhHHh-CCcHHHHHH-hccCCChHHHHHHHHHHHHHhcCChHHHHHHH
Q 015951 266 SFEIRLHRKAVSLVGDLAKCQ--LENMHKVEPPLFRD-RFFLKSVVD-LTASADLDLQEKALAAIKNLLQLRTTEALVLK 341 (397)
Q Consensus 266 ~~d~klr~kA~~lL~~L~~~~--l~~~~~~~~~~l~~-~g~v~~Lv~-lL~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~ 341 (397)
+.-.|.-|+|.+..+.... +. .--...+.|.. ..++..+|. +...+++.+..++.+|-..|+.+.. .|..++
T Consensus 158 --selSKtvAtfIlqKIL~dd~GL~-YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~r-ar~aL~ 233 (268)
T 2fv2_A 158 --SELSKTVATFILQKILLDDTGLA-YICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPR-AREALR 233 (268)
T ss_dssp --CHHHHHHHHHHHHHHHHSHHHHH-HHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHH-HHHHHH
T ss_pred --cHHHHHHHHHHHHHHhccchhHH-HHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHH-HHHHHH
Confidence 3457889999999887631 00 00011122211 123333333 4456789999999999999997743 555554
No 84
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=96.16 E-value=0.087 Score=49.99 Aligned_cols=168 Identities=11% Similarity=0.042 Sum_probs=112.0
Q ss_pred CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhc----CCCCHHHHHHHHHHHHHHhcC----ChHHHHHHHHcCc
Q 015951 141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL----NHPDTDIRKISAWILGKASQN----NPLVQKQVLELGA 212 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL----~s~~~~ir~~Aa~vLg~~aqN----Np~~Q~~vl~~g~ 212 (397)
+...+..|++.|...+++. ...+. .-+..++..+ .++++.+-..+..+|..+... +....+.-. .-.
T Consensus 59 d~k~~~~ale~L~~~l~~~--~~~~~--~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~ 133 (266)
T 2of3_A 59 DFKQHLAALDSLVRLADTS--PRSLL--SNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAF 133 (266)
T ss_dssp CHHHHHHHHHHHHHHHHHC--HHHHH--HTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHH
T ss_pred CHHHHHHHHHHHHHHhhhC--hHHHH--HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHH
Confidence 5678888999998876532 12211 1233333332 367999999999998887532 111111111 126
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015951 213 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 292 (397)
Q Consensus 213 lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~ 292 (397)
+|.|+.-+-+..+.+|.++-..+-.+..-+|+. . -++.+...++++ +.|.|..++..+.++.... +.
T Consensus 134 lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~--~-----v~~~l~~g~ksK--N~R~R~e~l~~l~~li~~~----G~ 200 (266)
T 2of3_A 134 VPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPL--K-----MTPMLLDALKSK--NARQRSECLLVIEYYITNA----GI 200 (266)
T ss_dssp HHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHH--H-----HHHHHHHGGGCS--CHHHHHHHHHHHHHHHHHH----CS
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHHHHCCHH--H-----HHHHHHHHHccC--CHHHHHHHHHHHHHHHHhc----CC
Confidence 899999888888888877666555444323332 1 234567778877 5789999999999998642 11
Q ss_pred CcchhHHhCCcH---HHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 293 VEPPLFRDRFFL---KSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 293 ~~~~~l~~~g~v---~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
. -...+ +.+..++...|..||+.|+.++..+-..
T Consensus 201 ~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~ 237 (266)
T 2of3_A 201 S------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKF 237 (266)
T ss_dssp G------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHH
T ss_pred C------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 1 13467 9999999999999999999999987765
No 85
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=95.96 E-value=0.27 Score=44.61 Aligned_cols=201 Identities=17% Similarity=0.196 Sum_probs=131.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCC-HHHHHHHHHHHHhcc---CCCCchhHHHh----c---------CCH
Q 015951 109 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLS-LEDSQRALQELLILV---EPIDNANDLSK----L---------GGL 171 (397)
Q Consensus 109 ~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s-~e~k~~AL~~L~~Lv---e~iDnA~~~~~----l---------GGl 171 (397)
.++|++.+..+ -.|-+..-|.++.++.+-..+ ++-...++..|--++ |.|+-...+.+ + +.+
T Consensus 31 ~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~el~epl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe~v~~vV 109 (253)
T 2db0_A 31 ESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTREDLYEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPELVKSMI 109 (253)
T ss_dssp HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHHHHHhhH
Confidence 45566666543 223345556666665443211 233333444443332 33333222211 1 234
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHh
Q 015951 172 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYV 251 (397)
Q Consensus 172 ~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~ 251 (397)
|.+..-+.-.++.+|..-..+|+.++.+||..-- +.+.-+..|+.|.+..-+..|+.-|+.+--+++.....
T Consensus 110 p~lfanyrigd~kikIn~~yaLeeIaranP~l~~-----~v~rdi~smltskd~~Dkl~aLnFi~alGen~~~yv~P--- 181 (253)
T 2db0_A 110 PVLFANYRIGDEKTKINVSYALEEIAKANPMLMA-----SIVRDFMSMLSSKNREDKLTALNFIEAMGENSFKYVNP--- 181 (253)
T ss_dssp HHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHH-----HHHHHHHHHTSCSSHHHHHHHHHHHHTCCTTTHHHHGG---
T ss_pred HHHHHHHhcCCccceecHHHHHHHHHHhChHHHH-----HHHHHHHHHhcCCChHHHHHHHHHHHHHhccCccccCc---
Confidence 4444555668999999999999999999997654 34567889999888777889999999886666554444
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951 252 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 252 ~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 331 (397)
=++.|..+|.++ +.-+|.-|+-.|.+++. .++..+.. +..-++-++.....++.++-.+|..|+-
T Consensus 182 --fLprL~aLL~D~--deiVRaSaVEtL~~lA~-----~npklRki------i~~kl~e~~D~S~lv~~~V~egL~rl~l 246 (253)
T 2db0_A 182 --FLPRIINLLHDG--DEIVRASAVEALVHLAT-----LNDKLRKV------VIKRLEELNDTSSLVNKTVKEGISRLLL 246 (253)
T ss_dssp --GHHHHHGGGGCS--SHHHHHHHHHHHHHHHT-----SCHHHHHH------HHHHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred --chHHHHHHHcCc--chhhhHHHHHHHHHHHH-----cCHHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 468899999987 55699999999999995 34444433 3344555677778899999999988875
Q ss_pred CC
Q 015951 332 LR 333 (397)
Q Consensus 332 ~~ 333 (397)
..
T Consensus 247 ~e 248 (253)
T 2db0_A 247 LE 248 (253)
T ss_dssp C-
T ss_pred Hh
Confidence 53
No 86
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=95.96 E-value=0.14 Score=47.34 Aligned_cols=133 Identities=20% Similarity=0.171 Sum_probs=89.1
Q ss_pred HHHHHhcc--CCCCchhHHHhcCCHHHHHHhcCC----C-------CHHHHHHHHHHHHHHhcCChHHHHHHHH-cCcHH
Q 015951 149 LQELLILV--EPIDNANDLSKLGGLSVLVGQLNH----P-------DTDIRKISAWILGKASQNNPLVQKQVLE-LGALS 214 (397)
Q Consensus 149 L~~L~~Lv--e~iDnA~~~~~lGGl~~Li~lL~s----~-------~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~-~g~lp 214 (397)
|..|.-.+ ++++....| ..||+..|+.+|.. + +..++.....||..+. ||..--+.++. .+++.
T Consensus 22 L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~ 99 (233)
T 2f31_A 22 LESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGIL 99 (233)
T ss_dssp HHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHH
T ss_pred HHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHH
Confidence 44444333 456777888 57999999988742 1 4577889999999988 55555555554 56899
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHhcCCh-hc-HHHHH----------hcCcHHHHHHhhcCCCccHHHHHHHHHHHHHH
Q 015951 215 KLMKMVKSSFVEEAVKALYTVSSLIRNNL-AG-QEMFY----------VEAGDLMLQDILGNSSFEIRLHRKAVSLVGDL 282 (397)
Q Consensus 215 ~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~-~~-~~~f~----------~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L 282 (397)
.|...|.+....++..++--|+.++.... .+ ...++ +..-+..++..+.+. .+..++..++.++..+
T Consensus 100 ~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~~~~~m~lIN~l 178 (233)
T 2f31_A 100 LLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINAL 178 (233)
T ss_dssp HHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT-SCHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC-ChHHHHHHHHHHHHHH
Confidence 99999998888888887766666554332 23 22221 223466677777653 3566777888888887
Q ss_pred hh
Q 015951 283 AK 284 (397)
Q Consensus 283 ~~ 284 (397)
+.
T Consensus 179 i~ 180 (233)
T 2f31_A 179 IT 180 (233)
T ss_dssp HT
T ss_pred HC
Confidence 75
No 87
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=95.45 E-value=0.71 Score=51.30 Aligned_cols=112 Identities=13% Similarity=0.026 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCC---CHHHHHHHHHHHHHHh
Q 015951 121 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP---DTDIRKISAWILGKAS 197 (397)
Q Consensus 121 ~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~---~~~ir~~Aa~vLg~~a 197 (397)
+|.+++.+.++++..-++..+++.|..|.+-|..+=++. ++|.....+|.++ ++.+|..|+.+|-+..
T Consensus 1 ~~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I 71 (980)
T 3ibv_A 1 GPMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSSS---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKV 71 (980)
T ss_dssp --CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHST---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcCh---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 466788888999877788888999999988887655543 3888888988653 7899999999999888
Q ss_pred cCChHH----HHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhcC
Q 015951 198 QNNPLV----QKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIRN 241 (397)
Q Consensus 198 qNNp~~----Q~~vl~~g~lp~Ll~LL~-s~~~~v~~kAl~ALS~LiR~ 241 (397)
+.-|.- +...++...+..+.+.-. .++.-++.|...+++.++..
T Consensus 72 ~~l~~e~~~~~~~~lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~ 120 (980)
T 3ibv_A 72 REWNNESNLLELQMIRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQ 120 (980)
T ss_dssp HHCCTTTSHHHHHHHHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHH
T ss_pred HhCChhhhHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHH
Confidence 743333 445555555665555211 23446788888888877654
No 88
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=95.27 E-value=0.45 Score=47.32 Aligned_cols=157 Identities=16% Similarity=0.098 Sum_probs=106.5
Q ss_pred CCCCchhHHHhcCCHHHHHHhcCC-----------CCHHHHHHHHHHHHHHhcCChHHHHHHH-HcCcHHHHHHhhcCCC
Q 015951 157 EPIDNANDLSKLGGLSVLVGQLNH-----------PDTDIRKISAWILGKASQNNPLVQKQVL-ELGALSKLMKMVKSSF 224 (397)
Q Consensus 157 e~iDnA~~~~~lGGl~~Li~lL~s-----------~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl-~~g~lp~Ll~LL~s~~ 224 (397)
.+++.-..|. .+|+..|+.+|.. .+..+......||..+. ||..--+.++ ..+++..|...+.+..
T Consensus 36 ~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~~ 113 (386)
T 2bnx_A 36 NPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPAV 113 (386)
T ss_dssp SCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTTS
T ss_pred CCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCCC
Confidence 4567778886 6899999987742 14578889999999998 4554445555 4578999999999888
Q ss_pred HHHHHHHHHHHHHHhcCCh-hc-HHHH----------HhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCC
Q 015951 225 VEEAVKALYTVSSLIRNNL-AG-QEMF----------YVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHK 292 (397)
Q Consensus 225 ~~v~~kAl~ALS~LiR~~~-~~-~~~f----------~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~ 292 (397)
..++..++--|+.++-... .+ ...+ .+..-+..|+..+.+. .+..++..++.+|..++.+ .+
T Consensus 114 ~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~-~~~e~~~a~m~lIN~lv~~-----~~ 187 (386)
T 2bnx_A 114 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG-TSIALKVGCLQLINALITP-----AE 187 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT-SCHHHHHHHHHHHHHHHTT-----CS
T ss_pred chHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC-ChHHHHHHHHHHHHHHHCC-----CC
Confidence 8888777766665554332 23 2222 2233577788888754 3667899999999999863 23
Q ss_pred C------cchhHHhCCcHHHHHHhccCCChHHHHH
Q 015951 293 V------EPPLFRDRFFLKSVVDLTASADLDLQEK 321 (397)
Q Consensus 293 ~------~~~~l~~~g~v~~Lv~lL~~~d~dv~E~ 321 (397)
+ .+..|...|+.+.+-.+-...++++..+
T Consensus 188 dl~~R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 188 ELDFRVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 2 4556778898887766544455554444
No 89
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=95.23 E-value=0.21 Score=55.59 Aligned_cols=191 Identities=13% Similarity=0.146 Sum_probs=122.6
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc-CCHHHHHHhcCCCCHHHHHHHHHHHHHHhc--CC
Q 015951 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL-GGLSVLVGQLNHPDTDIRKISAWILGKASQ--NN 200 (397)
Q Consensus 124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l-GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aq--NN 200 (397)
-..++..++..+.+.. -=..|+.||..+..+++.. ....-..+ ..+|.+-++.-.+.++|+..|..++..+|+ .|
T Consensus 131 ~~~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n 208 (986)
T 2iw3_A 131 IKALLPHLTNAIVETN-KWQEKIAILAAFSAMVDAA-KDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDN 208 (986)
T ss_dssp HHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHHh-HHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCC
Confidence 3445556666665543 3578999999999999754 11111222 346666678888999999999999999986 34
Q ss_pred hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHH
Q 015951 201 PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVG 280 (397)
Q Consensus 201 p~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~ 280 (397)
..+. ..+|.|++.+.+++. --+++..||+..--. ....=--+=-+|+|.+.|...+ ..++++++-.+-
T Consensus 209 ~d~~------~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~--~v~~~~l~~~~p~l~r~l~~~~--~~~~r~~~~~~~ 276 (986)
T 2iw3_A 209 KDIE------RFIPSLIQCIADPTE--VPETVHLLGATTFVA--EVTPATLSIMVPLLSRGLNERE--TGIKRKSAVIID 276 (986)
T ss_dssp TTTG------GGHHHHHHHHHCTTH--HHHHHHHHTTCCCCS--CCCHHHHHHHHHHHHHHHTSSS--HHHHHHHHHHHH
T ss_pred cchh------hhHHHHHHHhcChhh--hHHHHHHhhcCeeEe--eecchhHHHHHHHHHhhhccCc--chhheeeEEEEc
Confidence 4332 479999999988643 446688888754221 1111000113577777787663 347899999999
Q ss_pred HHhhchhccCCCCcchhHHhCCcHHHHHHhccC-CChHHHHHHHHHHHHHhcC
Q 015951 281 DLAKCQLENMHKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 281 ~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~~ 332 (397)
|||. |. .+|.....|. ..+++.+-..... .||++||.|..|+..|...
T Consensus 277 n~~~--lv-~~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~ 325 (986)
T 2iw3_A 277 NMCK--LV-EDPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRRV 325 (986)
T ss_dssp HHHT--TC-CCHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHH
T ss_pred chhh--hc-CCHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHh
Confidence 9995 21 1222222221 3455555554433 5999999999999998543
No 90
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=95.14 E-value=1.1 Score=44.15 Aligned_cols=209 Identities=10% Similarity=0.045 Sum_probs=121.6
Q ss_pred CCCHHHHHHhHHHHHHHHHhcC-CCC--HH---HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHH
Q 015951 99 RLSPSELKKRQMEIKELMEKLK-TPS--DA---QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLS 172 (397)
Q Consensus 99 ~~s~e~l~~r~~~L~ea~~~~~-~~~--d~---~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~ 172 (397)
|.++. ++++-+++++-.+. |.+ .. .+.-..++.+.++ +.+.|.-..--+..+....+.+ | =...
T Consensus 38 ~~~~~---kc~~~l~kll~l~~~G~~f~~~e~t~lf~~v~kl~~s~--d~~lKrLvYLyl~~~~~~~~e~--i---Lv~N 107 (355)
T 3tjz_B 38 PINPR---KCAHILTKILYLINQGEHLGTTEATEAFFAMTKLFQSN--DPTLRRMCYLTIKEMSCIAEDV--I---IVTS 107 (355)
T ss_dssp SCCHH---HHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHGGGGCC--CHHHHHHHHHHHHHHTTTSSCG--G---GGHH
T ss_pred CCcHH---HHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhCCCHHHH--H---HHHH
Confidence 45664 55777888776552 322 11 1222334455544 4566655544555444443322 1 1455
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc
Q 015951 173 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 252 (397)
Q Consensus 173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~ 252 (397)
.+.+-++++++-+|..|.++++.+.. |+.-+ ...+.+-+.+.+.++-||.+|+.+...++..+|...+
T Consensus 108 sl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~----- 175 (355)
T 3tjz_B 108 SLTKDMTGKEDSYRGPAVRALCQITD--STMLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK----- 175 (355)
T ss_dssp HHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----
T ss_pred HHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----
Confidence 66677888999999999999999974 32222 2566788888888899999999999999888876543
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch----------hccCC--CCc--chhH-------------HhCCcHH
Q 015951 253 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ----------LENMH--KVE--PPLF-------------RDRFFLK 305 (397)
Q Consensus 253 gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~----------l~~~~--~~~--~~~l-------------~~~g~v~ 305 (397)
+.+..+..++.+. +.-++..|+.+++.+.... +.... ... ...+ ....+++
T Consensus 176 ~~~~~l~~ll~d~--n~~V~~~Al~lL~ei~~~d~~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~ 253 (355)
T 3tjz_B 176 RWVNEAQEAASSD--NIMVQYHALGLLYHVRKNDRLAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFD 253 (355)
T ss_dssp TTHHHHHHHTTCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC--------------
T ss_pred HHHHHHHHHhcCC--CccHHHHHHHHHHHHHhhchHHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHH
Confidence 4567778888765 4457778888888776420 00000 000 0000 0123445
Q ss_pred HHHHhccCCChHHHHHHHHHHHHHhc
Q 015951 306 SVVDLTASADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 306 ~Lv~lL~~~d~dv~E~aL~aL~~L~~ 331 (397)
.+...|++.++-|.-.|+.++..+..
T Consensus 254 ~l~~~L~~~~~aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 254 FIESCLRNKHEMVVYEAASAIVNLPG 279 (355)
T ss_dssp ---CCCCCSSHHHHHHHHHHHTC---
T ss_pred HHHHHHcCCChHHHHHHHHHHHhccC
Confidence 55556677777788778777777655
No 91
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B
Probab=94.79 E-value=0.26 Score=49.09 Aligned_cols=142 Identities=16% Similarity=0.177 Sum_probs=94.9
Q ss_pred cCcHHHHHHhhcC----C-------CHHHHHHHHHHHHHHhcCChhcHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHHH
Q 015951 210 LGALSKLMKMVKS----S-------FVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVS 277 (397)
Q Consensus 210 ~g~lp~Ll~LL~s----~-------~~~v~~kAl~ALS~LiR~~~~~~~~f~~~-gGi~~L~~lL~s~~~d~klr~kA~~ 277 (397)
.+|+..|+.+|.. . +......++.+|.++. ++..+...+..+ +++..|..+|.++ .++++..++.
T Consensus 46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalm-N~~~Gl~~vl~~~~~i~~l~~sL~s~--~~~~r~~vle 122 (386)
T 2bnx_A 46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAK 122 (386)
T ss_dssp HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT-SSHHHHHHHHHSSSHHHHHHHTCCTT--SHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHh-CCHHHHHHHHcCcHHHHHHHHHhCCC--CchHHHHHHH
Confidence 5788888877742 1 1234667888888775 566777777765 6899999999876 6678889999
Q ss_pred HHHHHhhchhccC-CCCcchhH------HhCCcHHHHHHhcc-CCChHHHHHHHHHHHHHhcCChH------HHHHHHhc
Q 015951 278 LVGDLAKCQLENM-HKVEPPLF------RDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLRTT------EALVLKDF 343 (397)
Q Consensus 278 lL~~L~~~~l~~~-~~~~~~~l------~~~g~v~~Lv~lL~-~~d~dv~E~aL~aL~~L~~~~~~------~r~~~~~~ 343 (397)
+|..+|.-...++ ++...+.+ .+..-...+++.+. ..+.+++-.++..+-.+....++ .|..|. .
T Consensus 123 LL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~-~ 201 (386)
T 2bnx_A 123 LLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELM-R 201 (386)
T ss_dssp HHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH-H
T ss_pred HHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH-H
Confidence 9999986210001 11111111 22334455777776 45788998888888888887653 233455 7
Q ss_pred CChHHHHHHHHH
Q 015951 344 CGLDTALERLRQ 355 (397)
Q Consensus 344 ~gL~~~L~~Lr~ 355 (397)
+||...+..||.
T Consensus 202 ~GL~~il~~Lr~ 213 (386)
T 2bnx_A 202 LGLHQVLQELRE 213 (386)
T ss_dssp TTHHHHHHHHTT
T ss_pred CChHHHHHHHhc
Confidence 999999998876
No 92
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*
Probab=94.59 E-value=1.2 Score=44.15 Aligned_cols=243 Identities=14% Similarity=0.125 Sum_probs=128.9
Q ss_pred cccCCCCHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHH-HHHhccCCCCchhHHHhcCCHHH
Q 015951 95 QDVQRLSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQ-ELLILVEPIDNANDLSKLGGLSV 173 (397)
Q Consensus 95 ~~~~~~s~e~l~~r~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~-~L~~Lve~iDnA~~~~~lGGl~~ 173 (397)
+...++|++++. +-+++.|++++.+.+.. +-+.+. +.+.|-.-+. .... .... ........--.-
T Consensus 5 ~~~~~~se~ev~---~~F~~mL~~mnl~~ek~------~~l~~~--~~e~Kw~mi~~~~~~--~~~~-~~~~~~~~sP~~ 70 (383)
T 3eg5_B 5 QSLQDISDEQVL---VLFEQMLVDMNLNEEKQ------QPLREK--DIVIKREMVSQYLHT--SKAG-MNQKESSRSAMM 70 (383)
T ss_dssp ----------CC---HHHHHHHHHTTCCHHHH------HHHHSS--CHHHHHHHHHHHHHH--C----------CCCHHH
T ss_pred hhcccCCHHHHH---HHHHHHHHHcCCCHHHH------HHHHhC--CHHHHHHHHHHHHHH--hhhc-cccccCCCCHHH
Confidence 345567776653 23466777777765443 333333 4455533322 1111 0000 000111122223
Q ss_pred HHHhcCCCC-HHHHHHHHHHHHHHhcCChH-HHHHHHHcCcHHHHHHhhcC-----------CCHHHHHHHHHHHHHHhc
Q 015951 174 LVGQLNHPD-TDIRKISAWILGKASQNNPL-VQKQVLELGALSKLMKMVKS-----------SFVEEAVKALYTVSSLIR 240 (397)
Q Consensus 174 Li~lL~s~~-~~ir~~Aa~vLg~~aqNNp~-~Q~~vl~~g~lp~Ll~LL~s-----------~~~~v~~kAl~ALS~LiR 240 (397)
.+..|.+.. .+--.....-|...-.++|. .=+.|. .+|+..|+.+|.. .+.......+.||.++.
T Consensus 71 yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalm- 148 (383)
T 3eg5_B 71 YIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM- 148 (383)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHT-
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHh-
Confidence 445554432 11111122233333334443 334454 7889999998852 11245567788888775
Q ss_pred CChhcHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC-CCCcchhH------HhCCcHHHHHHhcc
Q 015951 241 NNLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM-HKVEPPLF------RDRFFLKSVVDLTA 312 (397)
Q Consensus 241 ~~~~~~~~f~~~-gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~-~~~~~~~l------~~~g~v~~Lv~lL~ 312 (397)
++..+...++.+ .++..|..+|.++ .++++.-|+-+|+.+|.-....+ ++...+.+ .+..-...+++.|.
T Consensus 149 N~~~G~~~vl~~~~~i~~l~~~L~s~--~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~ 226 (383)
T 3eg5_B 149 NNKFGIKTMLETEEGILLLVRAMDPA--VPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 226 (383)
T ss_dssp SSHHHHHHHHTCSSHHHHHHHTCCTT--SHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTS
T ss_pred cchhhHHHHHcChHHHHHHHHHhCCC--chHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 567777777765 6789999999876 66789999999999986210000 11111111 22344566788887
Q ss_pred C-CChHHHHHHHHHHHHHhcCChH--H----HHHHHhcCChHHHHHHHHHH
Q 015951 313 S-ADLDLQEKALAAIKNLLQLRTT--E----ALVLKDFCGLDTALERLRQQ 356 (397)
Q Consensus 313 ~-~d~dv~E~aL~aL~~L~~~~~~--~----r~~~~~~~gL~~~L~~Lr~~ 356 (397)
. .+.+++-.++..+-.+....+. . |..|. .+|+...+..||..
T Consensus 227 ~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~-~~Gl~~il~~lr~~ 276 (383)
T 3eg5_B 227 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELM-RLGLHQVLQELREI 276 (383)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH-HTTHHHHHHHHTTS
T ss_pred ccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HCChHHHHHHHhcC
Confidence 6 5888888888888888877543 2 23444 68999999988753
No 93
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}
Probab=94.56 E-value=0.67 Score=42.59 Aligned_cols=148 Identities=16% Similarity=0.157 Sum_probs=97.8
Q ss_pred HHHHHHHcCcHHHHHHhhcCC-----------CHHHHHHHHHHHHHHhcCChhcHHHHHhc-CcHHHHHHhhcCCCccHH
Q 015951 203 VQKQVLELGALSKLMKMVKSS-----------FVEEAVKALYTVSSLIRNNLAGQEMFYVE-AGDLMLQDILGNSSFEIR 270 (397)
Q Consensus 203 ~Q~~vl~~g~lp~Ll~LL~s~-----------~~~v~~kAl~ALS~LiR~~~~~~~~f~~~-gGi~~L~~lL~s~~~d~k 270 (397)
.=+.| ..+|+..|+.+|..- +......++.+|.++. ++..+...+..+ +++..|...|.++ .++
T Consensus 36 Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm-n~~~G~~~vl~~~~~i~~l~~~L~s~--~~~ 111 (233)
T 2f31_A 36 WVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM-NNKFGIKTMLETEEGILLLVRAMDPA--VPN 111 (233)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT-SSHHHHHHHHTSSSHHHHHHTTCCTT--SHH
T ss_pred HHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh-CChHHHHHHHcCcHHHHHHHHHhCCC--Cch
Confidence 33445 578888888887531 1234567788888775 567777777765 6789999999876 668
Q ss_pred HHHHHHHHHHHHhhchhccC-CCCcchhH------HhCCcHHHHHHhcc-CCChHHHHHHHHHHHHHhcCChH------H
Q 015951 271 LHRKAVSLVGDLAKCQLENM-HKVEPPLF------RDRFFLKSVVDLTA-SADLDLQEKALAAIKNLLQLRTT------E 336 (397)
Q Consensus 271 lr~kA~~lL~~L~~~~l~~~-~~~~~~~l------~~~g~v~~Lv~lL~-~~d~dv~E~aL~aL~~L~~~~~~------~ 336 (397)
++.-|+.+|+.+|.-...++ ++...+.+ .+..-...+++.++ ..+.+.+-.++..+-.+....++ .
T Consensus 112 ~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~l 191 (233)
T 2f31_A 112 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHI 191 (233)
T ss_dssp HHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 89999999999886310001 11111111 22233445677776 45788888888888888877653 2
Q ss_pred HHHHHhcCChHHHHHHHHH
Q 015951 337 ALVLKDFCGLDTALERLRQ 355 (397)
Q Consensus 337 r~~~~~~~gL~~~L~~Lr~ 355 (397)
|..|. .+|+...++.||.
T Consensus 192 R~ef~-~~Gl~~il~~l~~ 209 (233)
T 2f31_A 192 RSELM-RLGLHQVLQELRE 209 (233)
T ss_dssp HHHHH-HTTHHHHHHHHHH
T ss_pred HHHHH-HCChHHHHHHHhc
Confidence 33444 7899999998875
No 94
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=94.49 E-value=1 Score=48.91 Aligned_cols=138 Identities=13% Similarity=0.069 Sum_probs=91.6
Q ss_pred CCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh---cCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcH
Q 015951 179 NHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV---KSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 255 (397)
Q Consensus 179 ~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL---~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi 255 (397)
++++...+..|++++|.++..-+... ...++.++..+ .++++.++..++|+|+...+...... .+. ..-+
T Consensus 459 ~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~~vl 531 (963)
T 2x19_B 459 EPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-NSVL 531 (963)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-TTTH
T ss_pred CCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-HHHH
Confidence 55677889999999999997643211 22344454443 33457799999999998765422221 333 3677
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHhcCC
Q 015951 256 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 256 ~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~~ 333 (397)
+.|...|.+ .+++..|+.++.+++.. ......+.+ ..++..+..++..+ +.+.++.+..|+..++...
T Consensus 532 ~~l~~~l~~----~~V~~~A~~al~~l~~~----~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~ 601 (963)
T 2x19_B 532 PLVLHALGN----PELSVSSVSTLKKICRE----CKYDLPPYA--ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL 601 (963)
T ss_dssp HHHHHHTTC----GGGHHHHHHHHHHHHHH----TGGGCTTTH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhCC----chHHHHHHHHHHHHHHH----HHHHHHhhH--HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence 888888864 35899999999999962 222233332 23455555666653 5789999999999998654
No 95
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.35 E-value=0.18 Score=55.81 Aligned_cols=134 Identities=14% Similarity=0.118 Sum_probs=82.7
Q ss_pred CHHHHHHhc-CCCCHHHHHHHHHHHHHHhc--CChHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhc
Q 015951 170 GLSVLVGQL-NHPDTDIRKISAWILGKASQ--NNPLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAG 245 (397)
Q Consensus 170 Gl~~Li~lL-~s~~~~ir~~Aa~vLg~~aq--NNp~~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~ 245 (397)
.++.+++.| .+.++-+|..|+.++|-+.- .|+ .+|..|++.+.+ .++.+|..|+.||+-+.-+.+..
T Consensus 542 ~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~---------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~e~ 612 (963)
T 4ady_A 542 LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN---------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDYTT 612 (963)
T ss_dssp GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH---------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCSS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH---------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCHHH
Confidence 344444443 23455555555555543332 222 245656665544 45678888999999876555432
Q ss_pred HHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHH
Q 015951 246 QEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAA 325 (397)
Q Consensus 246 ~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~a 325 (397)
++.++..|... .+.-+|..|++++.-++. +++. ..++..|..+++..|..|+..|+.+
T Consensus 613 ---------v~rlv~~L~~~-~d~~VR~gAalALGli~a-----Gn~~-------~~aid~L~~L~~D~d~~Vrq~Ai~A 670 (963)
T 4ady_A 613 ---------VPRIVQLLSKS-HNAHVRCGTAFALGIACA-----GKGL-------QSAIDVLDPLTKDPVDFVRQAAMIA 670 (963)
T ss_dssp ---------HHHHTTTGGGC-SCHHHHHHHHHHHHHHTS-----SSCC-------HHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred ---------HHHHHHHHHhc-CCHHHHHHHHHHHHHhcc-----CCCc-------HHHHHHHHHHccCCCHHHHHHHHHH
Confidence 33344444322 256789999999998874 2221 2346677777888899999999999
Q ss_pred HHHHhcCCh
Q 015951 326 IKNLLQLRT 334 (397)
Q Consensus 326 L~~L~~~~~ 334 (397)
|+.+.....
T Consensus 671 LG~Ig~gtn 679 (963)
T 4ady_A 671 LSMILIQQT 679 (963)
T ss_dssp HHHHSTTCC
T ss_pred HHHHhcCCc
Confidence 998886543
No 96
>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}
Probab=94.27 E-value=0.44 Score=44.95 Aligned_cols=161 Identities=15% Similarity=0.066 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHHhhC---CCCCH--HHH-HHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCC-----CHHHHHHHHH
Q 015951 123 SDAQLIQIAIDDLNN---STLSL--EDS-QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHP-----DTDIRKISAW 191 (397)
Q Consensus 123 ~d~~lmk~~i~~L~~---~~~s~--e~k-~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~-----~~~ir~~Aa~ 191 (397)
+-+.+.++.+.++-. +..+. .+| .+||.-|+-.+...|....|.+.+----|.++|+.+ .+-+|-.+..
T Consensus 45 tia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLG 124 (268)
T 2fv2_A 45 TIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLG 124 (268)
T ss_dssp HHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHH
Confidence 456777888877633 23333 233 567777788888899999999987665666777543 3679999999
Q ss_pred HHHHHhc-CChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChh------cHHHHHhc-CcHHHHHHhhc
Q 015951 192 ILGKASQ-NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLA------GQEMFYVE-AGDLMLQDILG 263 (397)
Q Consensus 192 vLg~~aq-NNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~------~~~~f~~~-gGi~~L~~lL~ 263 (397)
+||.+++ +++++-..+++.+.+|..++.+..+++--+..|.|-+.-++-+... ..+.|..- ..+..++..+.
T Consensus 125 VIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~ 204 (268)
T 2fv2_A 125 VIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLS 204 (268)
T ss_dssp HHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHh
Confidence 9999997 4678888899999999999999999988899999999988755322 12233321 22333333333
Q ss_pred CCCccHHHHHHHHHHHHHHhh
Q 015951 264 NSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 264 s~~~d~klr~kA~~lL~~L~~ 284 (397)
.. .+.|+-+.++.+-..|+.
T Consensus 205 ~~-ps~RLLKhiircYlRLsd 224 (268)
T 2fv2_A 205 KE-PSARLLKHVVRCYLRLSD 224 (268)
T ss_dssp TS-CCHHHHHHHHHHHHHHTT
T ss_pred cC-CChHHHHHHHHHHHHHhc
Confidence 22 356777777777777764
No 97
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=94.23 E-value=0.32 Score=53.40 Aligned_cols=181 Identities=9% Similarity=0.029 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHHHhccCCCC----chh------HHHhcCCHHHHHHhcCCC---CHHHHHHHHHHHHHHhcCChHHHHHH
Q 015951 141 SLEDSQRALQELLILVEPID----NAN------DLSKLGGLSVLVGQLNHP---DTDIRKISAWILGKASQNNPLVQKQV 207 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iD----nA~------~~~~lGGl~~Li~lL~s~---~~~ir~~Aa~vLg~~aqNNp~~Q~~v 207 (397)
+-..|..|+-.+.-+.+... ... ++... -...+++.|.++ ++-+|..|+|+||..+..-+ ...
T Consensus 418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~-l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~---~~~ 493 (960)
T 1wa5_C 418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDF-FTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT---KAQ 493 (960)
T ss_dssp CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHH-HHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC---HHH
T ss_pred hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHH-HHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCC---HHH
Confidence 34577778777766654311 011 11110 012244556666 89999999999999986522 222
Q ss_pred HHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh-------h-cHHHHHh--cCcHHHHHHhhcCCC-ccHH--HHHH
Q 015951 208 LELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL-------A-GQEMFYV--EAGDLMLQDILGNSS-FEIR--LHRK 274 (397)
Q Consensus 208 l~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~-------~-~~~~f~~--~gGi~~L~~lL~s~~-~d~k--lr~k 274 (397)
+ ...++.+++.+.+++..|+..|++||.+++.+.. . ....+.. ..-++.|..++.... ...+ ....
T Consensus 494 l-~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~ 572 (960)
T 1wa5_C 494 L-IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEF 572 (960)
T ss_dssp H-HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHH
T ss_pred H-HHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHH
Confidence 2 2478889998988778899999999999987421 1 1122211 234555566666531 0011 2235
Q ss_pred HHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc----c-CCChHHHHHHHHHHHHHhcC
Q 015951 275 AVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT----A-SADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 275 A~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL----~-~~d~dv~E~aL~aL~~L~~~ 332 (397)
+..++..++.. ..+...+.+. .+++.+...+ + .++..+...++.+|..++..
T Consensus 573 l~~al~~vv~~----~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~ 629 (960)
T 1wa5_C 573 LMRSIFRVLQT----SEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNY 629 (960)
T ss_dssp HHHHHHHHHHH----HTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH----HHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhc
Confidence 66667766642 2334444322 2344444433 2 34677888888888888875
No 98
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=94.06 E-value=0.31 Score=54.49 Aligned_cols=145 Identities=11% Similarity=0.110 Sum_probs=87.9
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC---H--HHHHHHHHHHHHHhc---CChhcHHHHHhc
Q 015951 181 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF---V--EEAVKALYTVSSLIR---NNLAGQEMFYVE 252 (397)
Q Consensus 181 ~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~---~--~v~~kAl~ALS~LiR---~~~~~~~~f~~~ 252 (397)
.+-..+..|+|++|.++..-..-+..-.=..++|.|+.+..... + -++..++|.||...+ .|+. |+ .
T Consensus 465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~----~L-~ 539 (1023)
T 4hat_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWN----FL-R 539 (1023)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHH----HH-H
T ss_pred CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHH----HH-H
Confidence 56789999999999999764433333233357888999886411 2 244567799987544 2322 21 2
Q ss_pred CcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhch---hccCC-CCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015951 253 AGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQ---LENMH-KVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 328 (397)
Q Consensus 253 gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~---l~~~~-~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~ 328 (397)
.-+..|...+.++ ..+++..|++++.+||..- +...+ .+..+.+ ..++..+...+..-+..-+..+..|+..
T Consensus 540 ~vl~~L~~~l~~~--~~~v~~~A~~al~~l~~~c~~~l~~~~~~e~~p~~--~~il~~l~~~~~~l~~~~~~~lyeai~~ 615 (1023)
T 4hat_C 540 TVILKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGI 615 (1023)
T ss_dssp HHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHHHHHhhccCCCCCchhH--HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3344566666544 4679999999999999631 10000 0001111 1233334444444577788899999999
Q ss_pred HhcCCh
Q 015951 329 LLQLRT 334 (397)
Q Consensus 329 L~~~~~ 334 (397)
+++..+
T Consensus 616 vi~~~~ 621 (1023)
T 4hat_C 616 IISEER 621 (1023)
T ss_dssp HHTTCC
T ss_pred HHHhCC
Confidence 998754
No 99
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.02 E-value=0.68 Score=51.23 Aligned_cols=140 Identities=14% Similarity=0.099 Sum_probs=91.6
Q ss_pred CCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhcc-CCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhcC
Q 015951 122 PSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILV-EPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQN 199 (397)
Q Consensus 122 ~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lv-e~iDnA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aqN 199 (397)
..+...+++++..+.+.. +.+.+..|...|..+. .+. ..++.++..| .+.++.+|..|++++|.++..
T Consensus 573 TGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aG 642 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAG 642 (963)
T ss_dssp SCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS
T ss_pred CCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Confidence 345666777777776543 4456667777776543 222 2467777644 778999999999999999988
Q ss_pred ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc----HHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015951 200 NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG----QEMFYVEAGDLMLQDILGNSSFEIRLHRKA 275 (397)
Q Consensus 200 Np~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~----~~~f~~~gGi~~L~~lL~s~~~d~klr~kA 275 (397)
||. . .++..|..+..+.+..||..|+.||+-+.-+...+ ...|. ..|.....+++.+...+--|
T Consensus 643 n~~--~-----~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l-----~~L~~~~~dk~~d~~~~fga 710 (963)
T 4ady_A 643 KGL--Q-----SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADIN-----KNFLSVITNKHQEGLAKFGA 710 (963)
T ss_dssp SCC--H-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHH-----HHHHHHHHCSSSCHHHHHHH
T ss_pred CCc--H-----HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHH-----HHHHHHHhcccccHHHHHHH
Confidence 772 1 25667778888888999999999999887665444 23232 22444444433344455555
Q ss_pred HHHHHHHh
Q 015951 276 VSLVGDLA 283 (397)
Q Consensus 276 ~~lL~~L~ 283 (397)
..+..-+.
T Consensus 711 ~iAqGll~ 718 (963)
T 4ady_A 711 CVAQGIMN 718 (963)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 55555443
No 100
>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9
Probab=93.67 E-value=0.036 Score=56.76 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=69.1
Q ss_pred chhHHHhc--CCHHHHHHhcCC----------CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHH
Q 015951 161 NANDLSKL--GGLSVLVGQLNH----------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEA 228 (397)
Q Consensus 161 nA~~~~~l--GGl~~Li~lL~s----------~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~ 228 (397)
||..|.+- ..+..|+.+|.+ .++.+.+-||.=||..++..|.-+..+-+.|+=..+++|+.+++++||
T Consensus 385 Na~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr 464 (480)
T 1ho8_A 385 NIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVK 464 (480)
T ss_dssp HSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHH
T ss_pred HHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHH
Confidence 44444432 245678888863 478999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q 015951 229 VKALYTVSSLIRNN 242 (397)
Q Consensus 229 ~kAl~ALS~LiR~~ 242 (397)
..|+.|+.-++.++
T Consensus 465 ~~AL~avQklm~~~ 478 (480)
T 1ho8_A 465 YEALKATQAIIGYT 478 (480)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999887654
No 101
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=93.54 E-value=0.41 Score=52.34 Aligned_cols=131 Identities=10% Similarity=0.121 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHH---HhcC--CCCHHHHHHHHHHHHHHhc---CChHHHHHHHHcCc
Q 015951 141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLV---GQLN--HPDTDIRKISAWILGKASQ---NNPLVQKQVLELGA 212 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li---~lL~--s~~~~ir~~Aa~vLg~~aq---NNp~~Q~~vl~~g~ 212 (397)
+-..++.|+-.+.-+.+....... ..++.++ ..|. .+++.||..|+|+||..+. .+| ..+. ..
T Consensus 477 ~w~~~eaal~~l~~iae~~~~~~~----~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~----~~l~-~v 547 (971)
T 2x1g_F 477 HWTKLEACIYSFQSVAEHFGGEEK----RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP----AYIP-PA 547 (971)
T ss_dssp CCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC--------CHH-HH
T ss_pred cHHHHHHHHHHHHHHHhhcChhhh----HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH----HHHH-HH
Confidence 445788888888887776543221 2233333 3334 2489999999999999874 223 1121 35
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 213 LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 213 lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
+|.|+..++ +.++..|.+|+..+++........++ ..-+..|..++..+..+.+.+..+..++..++.
T Consensus 548 l~~l~~~l~---~~v~~~A~~al~~l~~~~~~~l~p~~-~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~ 615 (971)
T 2x1g_F 548 INLLVRGLN---SSMSAQATLGLKELCRDCQLQLKPYA-DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMS 615 (971)
T ss_dssp HHHHHHHHH---SSCHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC---hHHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHH
Confidence 677777773 56899999999999987654333332 234556667777643456788888999998885
No 102
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=92.85 E-value=0.64 Score=47.56 Aligned_cols=122 Identities=10% Similarity=0.087 Sum_probs=83.4
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHH
Q 015951 180 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 259 (397)
Q Consensus 180 s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~ 259 (397)
.+++..+..|+..|....++-|..++.. |..++.|..+++..+|+.|+..|..++++ ..... -..+|+
T Consensus 39 kg~~k~K~LaaQ~I~kffk~FP~l~~~A-----i~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~k-----iaDvL~ 106 (507)
T 3u0r_A 39 KGGTKEKRLAAQFIPKFFKHFPELADSA-----INAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPR-----VADILT 106 (507)
T ss_dssp GSCHHHHHHHHHHHHHHGGGCGGGHHHH-----HHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHH-----HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhhChhhHHHH-----HHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhh-----HHHHHH
Confidence 3579999999999999999999999865 66799999999999999999999999997 33333 457899
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHH
Q 015951 260 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKN 328 (397)
Q Consensus 260 ~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~ 328 (397)
++|+++. ..-..-+-..|..|... ++ .+.+..+...+.+++..+||+++..|..
T Consensus 107 QlLqtdd--~~E~~~V~~sL~sllk~-----Dp--------k~tl~~lf~~i~~~~e~~Rer~lkFi~~ 160 (507)
T 3u0r_A 107 QLLQTDD--SAEFNLVNNALLSIFKM-----DA--------KGTLGGLFSQILQGEDIVRERAIKFLST 160 (507)
T ss_dssp HHTTCCC--HHHHHHHHHHHHHHHHH-----CH--------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHhccc--hHHHHHHHHHHHHHHhc-----Ch--------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence 9999763 21222233333333321 11 1333344444444566777777766643
No 103
>3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster}
Probab=92.62 E-value=4.4 Score=37.91 Aligned_cols=144 Identities=8% Similarity=0.041 Sum_probs=97.6
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
+.+-+++...... +.++|+..|....+++-+-|.+ -+- .-++.++++-..++.++|...+..|..++...++.-
T Consensus 15 ~~v~~lln~A~~~--~~~~kl~~L~qa~el~~~~dp~-ll~--~~l~~il~~~~~~~~~vrk~~~~Fi~e~~~~k~~l~- 88 (257)
T 3gs3_A 15 AKVVDWCNELVIA--SPSTKCELLAKVQETVLGSCAE-LAE--EFLESVLSLAHDSNMEVRKQVVAFVEQVCKVKVELL- 88 (257)
T ss_dssp HHHHHHHHHHTTC--CHHHHHHHHHHHHHHHTTTTGG-GHH--HHHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGGGH-
T ss_pred HHHHHHHHHhhhc--CcHHHHHHHHHHHHHHHccCHh-HHH--HHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3444445544443 3479999999999976554432 222 356777777677899999999999999996655322
Q ss_pred HHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--------HH-------HHHHhhcCCCccHH
Q 015951 206 QVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--------DL-------MLQDILGNSSFEIR 270 (397)
Q Consensus 206 ~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gG--------i~-------~L~~lL~s~~~d~k 270 (397)
...++.|..+++++++.+.++++.+.+++- |...+.+...++ |. .+...+.+. +..
T Consensus 89 ----~~~l~~L~~Ll~d~d~~V~K~~I~~~~~iY---~~~l~~i~~~~~~~~~~~~~W~~m~~lK~~Il~~~~s~--n~g 159 (257)
T 3gs3_A 89 ----PHVINVVSMLLRDNSAQVIKRVIQACGSIY---KNGLQYLCSLMEPGDSAEQAWNILSLIKAQILDMIDNE--NDG 159 (257)
T ss_dssp ----HHHHHHHHHHTTCSCHHHHHHHHHHHHHHH---HHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHHGGGSS--CHH
T ss_pred ----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHHccC--Ccc
Confidence 246788889999888889999998888873 344444444333 22 233445554 566
Q ss_pred HHHHHHHHHHHHhh
Q 015951 271 LHRKAVSLVGDLAK 284 (397)
Q Consensus 271 lr~kA~~lL~~L~~ 284 (397)
+|..+..++..+..
T Consensus 160 vkl~~iKF~e~vIl 173 (257)
T 3gs3_A 160 IRTNAIKFLEGVVV 173 (257)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 88899988888763
No 104
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=92.46 E-value=1.3 Score=48.04 Aligned_cols=136 Identities=14% Similarity=0.126 Sum_probs=86.0
Q ss_pred CCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHh---cCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHH
Q 015951 140 LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQ---LNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKL 216 (397)
Q Consensus 140 ~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~l---L~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~L 216 (397)
.+...++.++-.+.-+.+.++... ..-++.+++. +.++++.||..++|+||..+.--.... .++. ..++.|
T Consensus 461 ~~w~~~eaal~al~~i~~~~~~~~----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l~-~vl~~l 534 (963)
T 2x19_B 461 YSWQHTEALLYGFQSIAETIDVNY----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMIN-SVLPLV 534 (963)
T ss_dssp CCHHHHHHHHHHHHHHTTSCCSSC----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHHT-TTHHHH
T ss_pred CchHHHHHHHHHHHHHHhhcCchh----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHHH-HHHHHH
Confidence 356778777777777766543211 1123334433 344688999999999999875211111 2333 689999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 217 MKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 217 l~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
+..+.+ +.++..|++|+..+++..+.....++ ..-++.|..++.++..+.+.+..+..++..++.
T Consensus 535 ~~~l~~--~~V~~~A~~al~~l~~~~~~~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~ 599 (963)
T 2x19_B 535 LHALGN--PELSVSSVSTLKKICRECKYDLPPYA-ANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLS 599 (963)
T ss_dssp HHHTTC--GGGHHHHHHHHHHHHHHTGGGCTTTH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred HHHhCC--chHHHHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHhccCCCChHHHHHHHHHHHHHHh
Confidence 998865 67899999999999976543222221 123444555566533345678888888888875
No 105
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=92.30 E-value=4.1 Score=45.58 Aligned_cols=128 Identities=16% Similarity=0.108 Sum_probs=64.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC----CCHH
Q 015951 109 QMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH----PDTD 184 (397)
Q Consensus 109 ~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s----~~~~ 184 (397)
+.|+.+++-..+.+.-...|++. +.+...+..+-..++-.+...+.+ + . ..+..+..++.+ .++.
T Consensus 342 r~~~lDal~~aGT~~a~~~i~~~---i~~~~l~~~ea~~~l~~~~~~~~P-t-~------e~l~~~~~l~~~~~~~~~~~ 410 (1056)
T 1lsh_A 342 RRWILDAVPAMATSEALLFLKRT---LASEQLTSAEATQIVASTLSNQQA-T-R------ESLSYARELLNTSFIRNRPI 410 (1056)
T ss_dssp HHHHHHHHHHHCSHHHHHHHHHH---HHTTCSCHHHHHHHHHHHHHTCCC-C-H------HHHHHHHHHHTCHHHHTCHH
T ss_pred HHHHHHHhHhcCCHHHHHHHHHH---HHcCCCCHHHHHHHHHHhhccCCC-C-H------HHHHHHHHHHhCcccccCHH
Confidence 46777777766654444444444 556666765544444433333321 1 1 123334455554 4677
Q ss_pred HHHHHHHHHHHHhc----CChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHH
Q 015951 185 IRKISAWILGKASQ----NNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFY 250 (397)
Q Consensus 185 ir~~Aa~vLg~~aq----NNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~ 250 (397)
+|..|.-++|+++. +++.|...++. -....|.+.+.+.+.+.+..++.||+|+ ++|.....+.
T Consensus 411 l~~ta~La~gslV~k~c~~~~~c~~~~v~-~i~~~l~~~~~~~~~~~~~~~LkaLGN~--g~p~~l~~l~ 477 (1056)
T 1lsh_A 411 LRKTAVLGYGSLVFRYCANTVSCPDELLQ-PLHDLLSQSSDRAKEEEIVLALKALGNA--GQPNSIKKIQ 477 (1056)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCGGGTH-HHHHHHHHHHHTTCHHHHHHHHHHHHHH--TCGGGHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHH-HHHHHHHHHHhcCChHHHHHHHHHhhcc--CChhHHHHHH
Confidence 78777777776653 33322211111 0122233334444555566777777776 3455444443
No 106
>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*
Probab=91.60 E-value=3.3 Score=41.18 Aligned_cols=197 Identities=13% Similarity=0.116 Sum_probs=124.9
Q ss_pred CHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChH
Q 015951 123 SDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPL 202 (397)
Q Consensus 123 ~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~ 202 (397)
+.-+.+-+++....... + ++|+..|..+.+++-+-|. .-+ -.-++.++++-..++.+||...+..|+.++...++
T Consensus 22 ~~~~~v~~lln~A~~~~-~-~~Kl~~L~q~~EL~l~~dp-sLl--~~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~~e 96 (386)
T 3o2t_A 22 TTSERVVDLLNQAALIT-N-DSKITVLKQVQELIINKDP-TLL--DNFLDEIIAFQADKSIEVRKFVIGFIEEACKRDIE 96 (386)
T ss_dssp CHHHHHHHHHHHHHHCC-S-THHHHHHHHHHHHHHTTCG-GGG--GGGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHCGG
T ss_pred cHHHHHHHHHHhhhccC-h-HHHHHHHHHHHHHHhccCH-HHH--HHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHH
Confidence 44555666666665533 2 5799999999997543332 111 24678899988888999999999999999975443
Q ss_pred HHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCc--------HHH-------HHHhhcCCCc
Q 015951 203 VQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAG--------DLM-------LQDILGNSSF 267 (397)
Q Consensus 203 ~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gG--------i~~-------L~~lL~s~~~ 267 (397)
.- ..+++.|..|+.++++.+.++++.+.+++- +...+.++..++ |.. +...+.+.
T Consensus 97 l~-----~~~l~~L~~LL~d~d~~V~K~~I~~~tslY---pl~f~~i~~~~~~~~~~e~~W~~m~~lK~~Il~~~ds~-- 166 (386)
T 3o2t_A 97 LL-----LKLIANLNMLLRDENVNVVKKAILTMTQLY---KVALQWMVKSRVISELQEACWDMVSAMAGDIILLLDSD-- 166 (386)
T ss_dssp GH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHGGGCS--
T ss_pred HH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHH---HHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHhccC--
Confidence 32 236788888998888889899988888873 455555554443 322 33345554
Q ss_pred cHHHHHHHHHHHHHHhhchhcc-CCC--------------------Cc-chhHH--hCCcHHHHHHhccCC--ChHHHHH
Q 015951 268 EIRLHRKAVSLVGDLAKCQLEN-MHK--------------------VE-PPLFR--DRFFLKSVVDLTASA--DLDLQEK 321 (397)
Q Consensus 268 d~klr~kA~~lL~~L~~~~l~~-~~~--------------------~~-~~~l~--~~g~v~~Lv~lL~~~--d~dv~E~ 321 (397)
+..+|..++.++..++.-+-.. .++ -+ ...+. -.+++..|+..+..+ +.-..-.
T Consensus 167 n~GVrl~aiKFle~VIl~qS~~~~d~~~p~~~~~d~SL~~VP~nHp~L~~~~Le~EA~~lLd~LL~~l~~~~iss~~l~a 246 (386)
T 3o2t_A 167 NDGIRTHAIKFVEGLIVTLSPRMADSEIPRRQEHDISLDRIPRDHPYIQYNVLWEEGKAALEQLLKFMVHPAISSINLTT 246 (386)
T ss_dssp SHHHHHHHHHHHHHHHHHTSCCCTTCCCCGGGTTSCCGGGSCTTCSSSCHHHHHHHHHHHHHHHHHHTTC--CCHHHHHH
T ss_pred CcchHHHHHHHHHHHHHHhCCCCCCcccccccCCCCCHhhCCCCCCcCCHHHHHHHHHHHHHHHHHHHcccccccHHHHH
Confidence 5678889998888776422100 010 00 11122 246677777777764 3445566
Q ss_pred HHHHHHHHhcCCh
Q 015951 322 ALAAIKNLLQLRT 334 (397)
Q Consensus 322 aL~aL~~L~~~~~ 334 (397)
++++|..++...+
T Consensus 247 ~lnsLa~Iak~RP 259 (386)
T 3o2t_A 247 ALGSLANIARQRP 259 (386)
T ss_dssp HHHHHHHHHHHSG
T ss_pred HHHHHHHHHHhcH
Confidence 7777777776544
No 107
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=91.56 E-value=9.8 Score=36.34 Aligned_cols=219 Identities=12% Similarity=0.044 Sum_probs=118.3
Q ss_pred CChHHHHHHHHH-hccccccccCCCCHHHHHHhHHHHHHHHHhcC--CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 015951 77 SSIDGMLQWAIA-KLKETAQDVQRLSPSELKKRQMEIKELMEKLK--TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELL 153 (397)
Q Consensus 77 ~~l~glLkwsi~-~~~~~~~~~~~~s~e~l~~r~~~L~ea~~~~~--~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~ 153 (397)
-|++++++==-+ |.+ ....-+++|+++. ..+.+-..++.-. .+++ ..+.-+.+.+ ..+.+.+.-++|-|+
T Consensus 55 an~~~i~~KL~EfN~~--~~~~~~Ls~~el~-~L~~l~~~l~~~s~~~~~~-~~l~~l~kil---~WP~~~~fPvLDLlR 127 (304)
T 3ebb_A 55 ANPTQILGKLKELNGT--APEEKKLTEDDLI-LLEKILSLICNSSSEKPTV-QQLQILWKAI---NCPEDIVFPALDILR 127 (304)
T ss_dssp CCHHHHHHHHHHHHTT--SCGGGCCCHHHHH-HHHHHHHHHHTTCSSCCCH-HHHHHHHHHH---TSCTTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHc--cccccCcCHHHHH-HHHHHHHHHhccCCCccch-HHHHHHHHHH---cCCHHhHHHHHHHHH
Confidence 357777663332 211 1112368998773 4444444443221 2332 2334444444 355677888999999
Q ss_pred hccCCCCchhHHHhcCCHHHHH----HhcC-CCCHHHHHHHHHHHHHHhcCChHHHHHHHHc--CcHHHHHHhhcCCCHH
Q 015951 154 ILVEPIDNANDLSKLGGLSVLV----GQLN-HPDTDIRKISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVE 226 (397)
Q Consensus 154 ~Lve~iDnA~~~~~lGGl~~Li----~lL~-s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~--g~lp~Ll~LL~s~~~~ 226 (397)
-.+-+.+.+..|..-+.-..++ ..++ ...+..+..++++++|+..+ +..++.++.. ..++.+...+.+.+..
T Consensus 128 l~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nkn 206 (304)
T 3ebb_A 128 LSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKN 206 (304)
T ss_dssp HHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHH
T ss_pred HHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChh
Confidence 8887666665665543333333 4443 24577899999999999975 5566666653 3455555555555667
Q ss_pred HHHHHH---HHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCc
Q 015951 227 EAVKAL---YTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFF 303 (397)
Q Consensus 227 v~~kAl---~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~ 303 (397)
++..+. +-++........ .+.-. --...+..++... .+.....+++-++.+|+. .+++..+.....|+
T Consensus 207 l~iA~ATl~~NlAv~~~~~~~-~~~~~--~ll~~l~~il~~~-~d~EalyR~LvALGtL~~-----~~~~~~~lak~l~~ 277 (304)
T 3ebb_A 207 IHIALATLALNYSVCFHKDHN-IEGKA--QCLSLISTILEVV-QDLEATFRLLVALGTLIS-----DDSNAVQLAKSLGV 277 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHSCC-HHHHH--HHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHT-----TCHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHhhcCC-chHHH--HHHHHHHHHHhcc-CCHHHHHHHHHHHHHHHh-----CChhHHHHHHHcCH
Confidence 765443 333433322111 11111 1234444555543 355678889999999985 23333333344454
Q ss_pred HHHHHHhcc
Q 015951 304 LKSVVDLTA 312 (397)
Q Consensus 304 v~~Lv~lL~ 312 (397)
-..+-....
T Consensus 278 ~~~v~~~~~ 286 (304)
T 3ebb_A 278 DSQIKKYSS 286 (304)
T ss_dssp HHHGGGGGG
T ss_pred HHHHHHHHh
Confidence 443333333
No 108
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=91.46 E-value=11 Score=36.77 Aligned_cols=149 Identities=15% Similarity=0.125 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC---cHHHHH
Q 015951 183 TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA---GDLMLQ 259 (397)
Q Consensus 183 ~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g---Gi~~L~ 259 (397)
+++--.+-.+|..++. ++.+-..++..+.+-.+.+.+..++=++..-|...+-.++..|+.....|+..+ =+....
T Consensus 137 ~diAl~~G~mLRecir-~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~ 215 (341)
T 1upk_A 137 PEIALNCGIMLRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE 215 (341)
T ss_dssp TTTHHHHHHHHHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH
T ss_pred chhHhHHHHHHHHHHH-hHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHH
Confidence 3444455555566654 455777777777888888888887778888899899888888888777887765 345566
Q ss_pred HhhcCCCccHHHHHHHHHHHHHHhhchhccCCCC-cchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCChHHH
Q 015951 260 DILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKV-EPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLRTTEA 337 (397)
Q Consensus 260 ~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~-~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~~~~r 337 (397)
.+|.++ +.=+|+.++-+|+.|.... ++.. ...++.+..-++.++.+|++....+|-.|-....-++..+...+
T Consensus 216 ~Ll~S~--NYVTkRQSlKLLgelLldr---~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~ 289 (341)
T 1upk_A 216 KLLHSE--NYVTKRQSLKLLGELLLDR---HNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQ 289 (341)
T ss_dssp HHTTCS--SHHHHHHHHHHHHHHHHSG---GGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCH
T ss_pred HHhcCC--cchhHHHHHHHHHHHHhCc---hHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCCh
Confidence 778887 4458999999999998631 1211 22344556778889999999999999999999999998865433
No 109
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=91.09 E-value=6 Score=43.25 Aligned_cols=193 Identities=9% Similarity=0.092 Sum_probs=115.1
Q ss_pred HHHHHhhCCC-CCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC-------h
Q 015951 130 IAIDDLNNST-LSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNN-------P 201 (397)
Q Consensus 130 ~~i~~L~~~~-~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-------p 201 (397)
..+..+.++. ..+--|..|+..+..+.+.+. ...+. ..++.++..|.++++.||..||++|.+++.+. +
T Consensus 459 ~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~-~~~l~--~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~ 535 (960)
T 1wa5_C 459 EIAPDLTSNNIPHIILRVDAIKYIYTFRNQLT-KAQLI--ELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAF 535 (960)
T ss_dssp HTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSC-HHHHH--HHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCB
T ss_pred HhHHHhcCCCCCCceehHHHHHHHHHHHhhCC-HHHHH--HHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccc
Confidence 3555566542 256678889999998888763 22222 35778888888889999999999999988741 1
Q ss_pred H-HHHHHHH--cCcHHHHHHhhcCCC---HH--HHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhh----cCCCccH
Q 015951 202 L-VQKQVLE--LGALSKLMKMVKSSF---VE--EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDIL----GNSSFEI 269 (397)
Q Consensus 202 ~-~Q~~vl~--~g~lp~Ll~LL~s~~---~~--v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL----~s~~~d~ 269 (397)
. .+..+.. ...++.|+.++.... .. ....++.||+.++...+.....++. .-++.|...+ +++ .+.
T Consensus 536 ~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~-~~~ 613 (960)
T 1wa5_C 536 IFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNP-SNP 613 (960)
T ss_dssp SSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSC-CCH
T ss_pred cccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCC-CCc
Confidence 1 1222211 135667777777641 11 2345667776665543332222221 1223333333 333 355
Q ss_pred HHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 270 RLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 270 klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
.++..+..+|+.++.. .+++....+ ...+++.+...|.....++.+.+...+..+...
T Consensus 614 ~~~~~~~e~l~~l~~~----~~~~~~~~~-~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~~~ 671 (960)
T 1wa5_C 614 RFTHYTFESIGAILNY----TQRQNLPLL-VDSMMPTFLTVFSEDIQEFIPYVFQIIAFVVEQ 671 (960)
T ss_dssp HHHHHHHHHHHHHHHT----SCGGGHHHH-HHHHHHHHHHHHHTTCTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc----CCcchHHHH-HHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHh
Confidence 6777788888888862 233333322 334566777777776667777788777777643
No 110
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=90.99 E-value=1.6 Score=48.44 Aligned_cols=173 Identities=10% Similarity=0.045 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHhccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh---HHHHHHHHcCcHHHHHH
Q 015951 143 EDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNP---LVQKQVLELGALSKLMK 218 (397)
Q Consensus 143 e~k~~AL~~L~~Lve~-iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp---~~Q~~vl~~g~lp~Ll~ 218 (397)
+++..|...+..++.. +.. ..+. .+.+..|...+...... +.|+.+++.+|+..+ ...-.++ +.+|.++.
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~ 102 (986)
T 2iw3_A 29 DNRHEIASEVASFLNGNIIE-HDVP-EHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICT 102 (986)
T ss_dssp TTHHHHHHHHHHHHTSSCSS-SSCC-HHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHH
T ss_pred hHHHHHHHHHHHHHhccccc-cccc-hhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHH
Confidence 3455566666665542 221 1111 35667777777664444 999999999996542 2323333 68999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhH
Q 015951 219 MVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLF 298 (397)
Q Consensus 219 LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l 298 (397)
.+.+....||..|-+|+-+++...++..- ..-++.|...|.+.. .=..+.-|+.++..|+.. . +... ..
T Consensus 103 ~~~dk~~~v~~aa~~~~~~~~~~~~~~a~----~~~~~~~~~~~~~~~-kw~~k~~~l~~~~~~~~~----~-~~~~-~~ 171 (986)
T 2iw3_A 103 NAGNKDKEIQSVASETLISIVNAVNPVAI----KALLPHLTNAIVETN-KWQEKIAILAAFSAMVDA----A-KDQV-AL 171 (986)
T ss_dssp HTTCSSHHHHHHHHHHHHHHHHHSCGGGH----HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHH----S-HHHH-HH
T ss_pred HhcCCchHHHHHHHHHHHHHHHhCCHHHH----HHHHHHHHHHhcccc-chHHHHHHHHHHHHHHHH----h-HHHH-HH
Confidence 99988889999999999999887655322 234788888887542 345677888899999852 1 1111 11
Q ss_pred HhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcC
Q 015951 299 RDRFFLKSVVDLTASADLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 299 ~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~ 332 (397)
.=..++|.+.+.+....+++...|..++..++..
T Consensus 172 ~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~ 205 (986)
T 2iw3_A 172 RMPELIPVLSETMWDTKKEVKAAATAAMTKATET 205 (986)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG
T ss_pred hccchhcchHhhcccCcHHHHHHHHHHHHHHHhc
Confidence 1134566666667666777777777777666653
No 111
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=90.90 E-value=1 Score=49.21 Aligned_cols=134 Identities=12% Similarity=0.054 Sum_probs=82.9
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhh---c--CCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcH
Q 015951 181 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMV---K--SSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 255 (397)
Q Consensus 181 ~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL---~--s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi 255 (397)
++-..+..|..++|.++..-+... ...++.++.++ . +..+.+|..++++|+.+........ .+. ..-+
T Consensus 476 ~~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~-~~l-~~vl 548 (971)
T 2x1g_F 476 THWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP-AYI-PPAI 548 (971)
T ss_dssp TCCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-----CH-HHHH
T ss_pred CcHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH-HHH-HHHH
Confidence 456789999999999997644322 13445444433 3 2367889999999998764322111 111 1234
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHhcC
Q 015951 256 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLLQL 332 (397)
Q Consensus 256 ~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~~~ 332 (397)
+.|...|. .+++..|++++.+|+.. ......+.+ ..++..+..++..+ +.+.++.+..++..++..
T Consensus 549 ~~l~~~l~-----~~v~~~A~~al~~l~~~----~~~~l~p~~--~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~ 616 (971)
T 2x1g_F 549 NLLVRGLN-----SSMSAQATLGLKELCRD----CQLQLKPYA--DPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSL 616 (971)
T ss_dssp HHHHHHHH-----SSCHHHHHHHHHHHHHH----CHHHHHHHH--HHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhC-----hHHHHHHHHHHHHHHHH----HHHhccccH--HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHh
Confidence 55666662 24799999999999952 221222222 24555666677763 678999999999999875
No 112
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=90.49 E-value=1.2 Score=38.26 Aligned_cols=70 Identities=11% Similarity=0.096 Sum_probs=56.2
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015951 173 VLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 242 (397)
Q Consensus 173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s------~~~~v~~kAl~ALS~LiR~~ 242 (397)
.|..-|++.++.++..|..+|-++++|. +.++..|.....+..|++++.. .+..|+.|.+.-|-+-...+
T Consensus 42 ai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 118 (148)
T 1mhq_A 42 LLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF 118 (148)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 3445568899999999999999999994 6788888888999999999974 35688988877776654333
No 113
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=90.10 E-value=1.1 Score=39.09 Aligned_cols=67 Identities=12% Similarity=0.129 Sum_probs=53.3
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHh
Q 015951 173 VLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLI 239 (397)
Q Consensus 173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~Li 239 (397)
.|..-|++.++.++..|..+|-++++|. +..+..|.....+..|++++.. .++.|+.|++..|-.-.
T Consensus 56 al~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 56 AIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 3445678889999999999999999995 6688788877888889998875 34688888877665543
No 114
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=89.80 E-value=1.3 Score=37.65 Aligned_cols=67 Identities=13% Similarity=0.157 Sum_probs=52.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHh
Q 015951 173 VLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLI 239 (397)
Q Consensus 173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~Li 239 (397)
.|..-|++.++.++..|..+|-++++|. +..+..+.....+..|+++++..++.|+.+.+..|-+-.
T Consensus 46 ai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 46 SIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHH
Confidence 3445577889999999999999999996 557777777778888888887777888888877766543
No 115
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=89.56 E-value=1.3 Score=39.06 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=56.9
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015951 172 SVLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 242 (397)
Q Consensus 172 ~~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s------~~~~v~~kAl~ALS~LiR~~ 242 (397)
..|..-|++.++.++..|..+|-++++|. +.++..|.....+..|++++.. .+..|+.|++..|-.-...+
T Consensus 53 ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 130 (171)
T 1juq_A 53 RLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL 130 (171)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence 34556678899999999999999999995 5688888888899999999973 24688998888777654433
No 116
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=89.22 E-value=3.5 Score=45.59 Aligned_cols=147 Identities=12% Similarity=0.077 Sum_probs=82.5
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCC----C-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcH
Q 015951 181 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS----F-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGD 255 (397)
Q Consensus 181 ~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~----~-~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi 255 (397)
.+-..+..|++++|.++.......+.-+-...++.|+.+.... + +-++..++|+++...+-.... ..++ ..-+
T Consensus 465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~-~~~l-~~vl 542 (1049)
T 3m1i_C 465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAH-WNFL-RTVI 542 (1049)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHC-HHHH-HHHH
T ss_pred CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhH-HHHH-HHHH
Confidence 5667899999999999865443322111122455555544321 1 234446889998765432221 1222 2345
Q ss_pred HHHHHhhcCCCccHHHHHHHHHHHHHHhhchh---c-cCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951 256 LMLQDILGNSSFEIRLHRKAVSLVGDLAKCQL---E-NMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 256 ~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l---~-~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 331 (397)
+.|...+.++ +.+++..|++++.+++..-. . .......+.+ ..++..+..++...+.+-......|+..++.
T Consensus 543 ~~ll~~l~~~--~~~V~~~A~~al~~l~~~~~~~l~~~~~~~~~p~~--~~il~~l~~~~~~~~~~~~~~~~eai~~ii~ 618 (1049)
T 3m1i_C 543 LKLFEFMHET--HEGVQDMACDTFIKIVQKCKYHFVIQQPRESEPFI--QTIIRDIQKTTADLQPQQVHTFYKACGIIIS 618 (1049)
T ss_dssp HHHHHHTTSS--CHHHHHHHHHHHHHHHHHHTHHHHSCCTTCSSCHH--HHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCC--CHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCcHH--HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 6677777765 57899999999999996310 0 0000001111 1234444455555566666777788888776
Q ss_pred CC
Q 015951 332 LR 333 (397)
Q Consensus 332 ~~ 333 (397)
..
T Consensus 619 ~~ 620 (1049)
T 3m1i_C 619 EE 620 (1049)
T ss_dssp TC
T ss_pred cC
Confidence 54
No 117
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=87.79 E-value=15 Score=33.67 Aligned_cols=145 Identities=14% Similarity=0.020 Sum_probs=93.0
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH--H-HHHcC-cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhc---H
Q 015951 174 LVGQLNHPDTDIRKISAWILGKASQNNPLVQK--Q-VLELG-ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAG---Q 246 (397)
Q Consensus 174 Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~--~-vl~~g-~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~---~ 246 (397)
+-+-|.|.+=..|..|..-|..+.++++.... . +...+ ..+.+-+.+.+.+..+..+++.+|..++...... .
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence 44678899999999999999999887664321 1 11233 3455557888888899999999999988754322 1
Q ss_pred HHHH--hcCcHHHHHH-hhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHH
Q 015951 247 EMFY--VEAGDLMLQD-ILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKAL 323 (397)
Q Consensus 247 ~~f~--~~gGi~~L~~-lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL 323 (397)
..+. -..-++.|+. ++.+. ..+++..+..++..++.. .. ... .+++.+...+.+.++.++..++
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~--k~~~~~~a~~~l~~~~~~----~~--~~~-----~~~e~l~~~l~~Knpkv~~~~l 160 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSS--RATTKTQSMSCILSLCGL----DT--SIT-----QSVELVIPFFEKKLPKLIAAAA 160 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCC--CHHHHHHHHHHHHHHHHT----SS--SSH-----HHHHHHGGGGGCSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHh----cC--cHH-----HHHHHHHHHHhccCHHHHHHHH
Confidence 1121 1233455553 46655 456888888888887741 11 111 1345566677888889998888
Q ss_pred HHHHHHhc
Q 015951 324 AAIKNLLQ 331 (397)
Q Consensus 324 ~aL~~L~~ 331 (397)
..|..+..
T Consensus 161 ~~l~~~l~ 168 (278)
T 4ffb_C 161 NCVYELMA 168 (278)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887764
No 118
>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B
Probab=87.49 E-value=10 Score=42.24 Aligned_cols=111 Identities=12% Similarity=0.073 Sum_probs=73.9
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhc
Q 015951 120 KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQ 198 (397)
Q Consensus 120 ~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aq 198 (397)
..|-|.+.+.+++..+-++. .+.|..|-+.|..+-.+. ++|..+..+| ++.++.+|..|+.+|-+..+
T Consensus 10 ~~~~dv~~Le~av~~ly~p~--~~~r~~A~~~L~~~q~sp---------~aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~ 78 (1023)
T 4hat_C 10 SNDLDIALLDQVVSTFYQGS--GVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLIT 78 (1023)
T ss_dssp TSCCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHCT---------TGGGGHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHcCc---------cHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 45667777888888877764 346777777776544443 4677777777 45688999999999998887
Q ss_pred C----ChHHHHHHHHcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcC
Q 015951 199 N----NPLVQKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRN 241 (397)
Q Consensus 199 N----Np~~Q~~vl~~g~lp~Ll~LL~s~-----~~~v~~kAl~ALS~LiR~ 241 (397)
. -|.-+...++...+..+.+...++ ...++.|...+++.+++.
T Consensus 79 ~~W~~L~~e~~~~Ir~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~ 130 (1023)
T 4hat_C 79 RKWKLLPNDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQ 130 (1023)
T ss_dssp HHGGGSCHHHHHHHHHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCHHHHHHHHHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHH
Confidence 4 244444555555666666654332 234566777777777664
No 119
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=87.48 E-value=0.31 Score=45.46 Aligned_cols=44 Identities=16% Similarity=0.145 Sum_probs=26.8
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHH
Q 015951 173 VLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYT 234 (397)
Q Consensus 173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~A 234 (397)
.+..+++++++.||..|+..++ .+.|..++.+++..||..+...
T Consensus 78 ~l~~L~~D~~~~VR~~aA~~L~------------------~~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 78 ALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHccCcCHHHHHHHHHHCC------------------HHHHHHHHcCCCHHHHHHHHHh
Confidence 3446667888888888886431 1345556666566666555553
No 120
>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B
Probab=87.16 E-value=11 Score=41.75 Aligned_cols=69 Identities=13% Similarity=0.071 Sum_probs=43.2
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhc-CCCCHHHHHHHHHHHHHHhc
Q 015951 120 KTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL-NHPDTDIRKISAWILGKASQ 198 (397)
Q Consensus 120 ~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL-~s~~~~ir~~Aa~vLg~~aq 198 (397)
+.|.+.+.+.+++..+-+++ .+.+..|-+.|..+-.+. ++|..+..+| ++.++.+|..|+.+|-+..+
T Consensus 10 ~~~~~~~~l~~~l~~~~~p~--~~~r~~Ae~~L~~~~~~p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~ 78 (1049)
T 3m1i_C 10 SNDLDIALLDQVVSTFYQGS--GVQQKQAQEILTKFQDNP---------DAWQKADQILQFSTNPQSKFIALSILDKLIT 78 (1049)
T ss_dssp TSCCCHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHST---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHhCc---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 34556666777777666654 345666666665543332 3566666666 35677888888888887764
Q ss_pred C
Q 015951 199 N 199 (397)
Q Consensus 199 N 199 (397)
.
T Consensus 79 ~ 79 (1049)
T 3m1i_C 79 R 79 (1049)
T ss_dssp H
T ss_pred h
Confidence 3
No 121
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=87.07 E-value=3.7 Score=40.65 Aligned_cols=183 Identities=15% Similarity=0.197 Sum_probs=124.8
Q ss_pred HHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc-CCC
Q 015951 146 QRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSF 224 (397)
Q Consensus 146 ~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~-s~~ 224 (397)
.++++-|--|.|+.+--+-|++..|+..+-...+.++.++-...+..+-.++-.-.-|.. --...+|.+++.+. +++
T Consensus 261 tR~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t--~L~e~LPFi~~~i~~h~e 338 (619)
T 3c2g_A 261 IRTFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKT--PLENILPFLLRLIEIHPD 338 (619)
T ss_dssp HHHHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTS--CCTTHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhc--cccccchHHHHHhccCCC
Confidence 457777777888877778899999999999999999999999999998877643221111 11357899998886 556
Q ss_pred HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcC-C----CccHHHHHHHHHHHHHHhhch---h------ccC
Q 015951 225 VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGN-S----SFEIRLHRKAVSLVGDLAKCQ---L------ENM 290 (397)
Q Consensus 225 ~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s-~----~~d~klr~kA~~lL~~L~~~~---l------~~~ 290 (397)
+++.-....-||+.+.|..+..+.-+..|++..|...+.. + =.+-.-|..|+..++|-...- + .++
T Consensus 339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NG 418 (619)
T 3c2g_A 339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNG 418 (619)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTS
T ss_pred cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCC
Confidence 7888899999999999999988888999999999888642 1 123334666777776644310 0 011
Q ss_pred C-----C---CcchhHHhCCcHHHHHHhccCC--C----hHHHHHHHHHHHHHh
Q 015951 291 H-----K---VEPPLFRDRFFLKSVVDLTASA--D----LDLQEKALAAIKNLL 330 (397)
Q Consensus 291 ~-----~---~~~~~l~~~g~v~~Lv~lL~~~--d----~dv~E~aL~aL~~L~ 330 (397)
. + ...-.|++..+++.|+..|+.+ | .+++...++...-++
T Consensus 419 qr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F~Lvl 472 (619)
T 3c2g_A 419 ETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSFILLL 472 (619)
T ss_dssp CCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHh
Confidence 1 0 1112456667888888887654 2 244555555444333
No 122
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=86.76 E-value=17 Score=40.75 Aligned_cols=110 Identities=14% Similarity=0.085 Sum_probs=75.7
Q ss_pred CCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcC-CCCHHHHHHHHHHHHHHhcC
Q 015951 121 TPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN-HPDTDIRKISAWILGKASQN 199 (397)
Q Consensus 121 ~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~-s~~~~ir~~Aa~vLg~~aqN 199 (397)
.+-|.+.+.+++..+-++ +.+.|..|-+.|..+-.+.+ +|..+..+|. +.++.+|..|+.+|-+..+.
T Consensus 23 ~~~Dv~~Le~lv~~ly~p--~~~~r~qA~~~L~q~q~sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~ 91 (1073)
T 3gjx_A 23 QKLDINLLDNVVNCLYHG--EGAQQRMAQEVLTHLKEHPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKT 91 (1073)
T ss_dssp CCCSHHHHHHHHHTTTCS--SHHHHHHHHHHHHTSSCCSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence 445677777888877666 46778888888877665443 6777777774 46899999999999999874
Q ss_pred C----hHHHHHHHHcCcHHHHHHhhcCC-----CHHHHHHHHHHHHHHhcC
Q 015951 200 N----PLVQKQVLELGALSKLMKMVKSS-----FVEEAVKALYTVSSLIRN 241 (397)
Q Consensus 200 N----p~~Q~~vl~~g~lp~Ll~LL~s~-----~~~v~~kAl~ALS~LiR~ 241 (397)
+ |.-+...++...+..+.+...++ +..++.|...+++.+++.
T Consensus 92 ~W~~L~~e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~ 142 (1073)
T 3gjx_A 92 RWKILPRNQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQ 142 (1073)
T ss_dssp TGGGSCHHHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHH
T ss_pred hhhhCCHHHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHH
Confidence 2 44455555555667666654432 345667777788877664
No 123
>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}
Probab=86.39 E-value=5.5 Score=38.35 Aligned_cols=130 Identities=15% Similarity=0.083 Sum_probs=77.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHc--CcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC------cHHHHH
Q 015951 188 ISAWILGKASQNNPLVQKQVLEL--GALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA------GDLMLQ 259 (397)
Q Consensus 188 ~Aa~vLg~~aqNNp~~Q~~vl~~--g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g------Gi~~L~ 259 (397)
.|...|-.++. .-+.--++.+. ..+..|+ +..+.++.++.+|...|++.+||||++...+.+.- -++-|.
T Consensus 47 ~aLD~L~ElSH-Di~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNNP~Al~~V~~~~p~fv~~lf~~L~ 124 (315)
T 3qml_C 47 DSFDRIMEFAH-DYKHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNNPPVVEFINESFPNFKSKIMAALS 124 (315)
T ss_dssp HHHHHHGGGTT-SHHHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred HHHHHHHHhhh-hHHhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccCHHHHHHHHHhChhHHHHHHHHHH
Confidence 34444444443 23344444432 2333343 33445567899999999999999999988765421 112233
Q ss_pred HhhcCC--CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCC--ChHHHHHHHHHHHHHh
Q 015951 260 DILGNS--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASA--DLDLQEKALAAIKNLL 330 (397)
Q Consensus 260 ~lL~s~--~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~--d~dv~E~aL~aL~~L~ 330 (397)
.++..+ +.+ .++.+-+.+|.-|+. ++. .|. ...+..|.+++... ++.++.+++..+..+-
T Consensus 125 ~~~~~~~~~~~-~l~KR~LsII~~L~~------~~~---~F~-~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f 188 (315)
T 3qml_C 125 NLNDSNHRSSN-ILIKRYLSILNELPV------TSE---DLP-IYSTVVLQNVYERNNKDKQLQIKVLELISKIL 188 (315)
T ss_dssp HHHCC--CCCH-HHHHHHHHHHHHSCC------CST---TC---CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHhhcccchhH-HHHHHHHHHHHHHhc------ChH---hhh-hccHHHHHHHHccCCCCHHHHHHHHHHHHHHc
Confidence 333321 223 467777888888875 221 122 33457777776666 9999999999888766
No 124
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=85.64 E-value=2.3 Score=38.97 Aligned_cols=68 Identities=15% Similarity=0.215 Sum_probs=53.1
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHhc
Q 015951 173 VLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLIR 240 (397)
Q Consensus 173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp-~~Q~~vl~~g~lp~Ll~LL~s~-~~~v~~kAl~ALS~LiR 240 (397)
.|..-|++.++.++..|..+|-++++|.. ..+..|.....+..|+++++.. +..|+.|++..|-.-..
T Consensus 49 al~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 49 SIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 34556788999999999999999999954 4777777777888888888653 46788888877776543
No 125
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=85.54 E-value=4.4 Score=34.78 Aligned_cols=70 Identities=16% Similarity=0.096 Sum_probs=55.4
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCh-HHHHHHHHcCcHHHHHHhhcC------CCHHHHHHHHHHHHHHhcCC
Q 015951 173 VLVGQLNHPDTDIRKISAWILGKASQNNP-LVQKQVLELGALSKLMKMVKS------SFVEEAVKALYTVSSLIRNN 242 (397)
Q Consensus 173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp-~~Q~~vl~~g~lp~Ll~LL~s------~~~~v~~kAl~ALS~LiR~~ 242 (397)
.|..-|++.++.++..|..+|-++++|.. .++..|.....+..|++++.. .+..|+.|.+..|-+-...+
T Consensus 52 al~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f 128 (149)
T 3g2s_A 52 LLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL 128 (149)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence 34455678899999999999999999964 567778788889999999974 45788988888777655444
No 126
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=85.53 E-value=3.1 Score=35.92 Aligned_cols=66 Identities=11% Similarity=0.037 Sum_probs=52.0
Q ss_pred HHHHhcC-CCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHH-HHHhhcC---CCHHHHHHHHHHHHHH
Q 015951 173 VLVGQLN-HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSK-LMKMVKS---SFVEEAVKALYTVSSL 238 (397)
Q Consensus 173 ~Li~lL~-s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~-Ll~LL~s---~~~~v~~kAl~ALS~L 238 (397)
.|..-|+ +.++.++..|..+|-++++|. +..+..+.....+.. |++++.. .+..|+.|++..|-.-
T Consensus 57 al~krl~~~~n~~v~l~AL~LLd~~vkNcG~~fh~eva~~~fl~e~Lvk~~~~k~~~~~~Vk~kil~li~~W 128 (157)
T 1elk_A 57 AVKKRIVGNKNFHEVMLALTVLETCVKNCGHRFHVLVASQDFVESVLVRTILPKNNPPTIVHDKVLNLIQSW 128 (157)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHTHHHHSTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHHHHHhCHHHHHHHhhHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHH
Confidence 3445565 478999999999999999996 888888888889998 8898853 2357888887766654
No 127
>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5
Probab=85.51 E-value=0.34 Score=45.20 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=16.1
Q ss_pred HHHHHhcCCCCHHHHHHHHHH
Q 015951 172 SVLVGQLNHPDTDIRKISAWI 192 (397)
Q Consensus 172 ~~Li~lL~s~~~~ir~~Aa~v 192 (397)
+.|..+++.+++.||..++.-
T Consensus 101 ~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 101 EQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp GGGGGTTTCSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHh
Confidence 356677888888888888874
No 128
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=84.10 E-value=5.2 Score=36.25 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=52.6
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHHHHHhhcCC-CHHHHHHHHHHHHHHh
Q 015951 173 VLVGQLNHPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSKLMKMVKSS-FVEEAVKALYTVSSLI 239 (397)
Q Consensus 173 ~Li~lL~s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~Ll~LL~s~-~~~v~~kAl~ALS~Li 239 (397)
.|..-|++.++.++..|..+|-++++|. +..+..|.....+..|++++.+. +..|+.+++.-+-.-.
T Consensus 46 ~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~ 114 (220)
T 1dvp_A 46 AIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWA 114 (220)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 3445678899999999999999999996 55778877777888899988754 4678888776665543
No 129
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=83.81 E-value=4.7 Score=37.94 Aligned_cols=101 Identities=14% Similarity=0.122 Sum_probs=79.5
Q ss_pred CHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHH
Q 015951 170 GLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMF 249 (397)
Q Consensus 170 Gl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f 249 (397)
-+|.|+.=|..+.+.+|..+-.++..+++-.| -...++.++.-+.+.+.-+|..++..+++++..+...
T Consensus 133 ~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~-------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~G~~---- 201 (266)
T 2of3_A 133 FVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVG-------PLKMTPMLLDALKSKNARQRSECLLVIEYYITNAGIS---- 201 (266)
T ss_dssp HHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHC-------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHCSG----
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHHCC-------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCCC----
Confidence 46888888888889999999999988875322 1235677888888888888999999999998776543
Q ss_pred HhcCcH---HHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 250 YVEAGD---LMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 250 ~~~gGi---~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
...++ +.+..++.++ |..+|.-|..++..+..
T Consensus 202 -~~~~l~~~~~ia~ll~D~--d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 202 -PLKSLSVEKTVAPFVGDK--DVNVRNAAINVLVACFK 236 (266)
T ss_dssp -GGGGGCHHHHHGGGGGCS--SHHHHHHHHHHHHHHHH
T ss_pred -ccccccchHHHHHHHcCC--CHHHHHHHHHHHHHHHH
Confidence 13478 9999999986 66789999999887765
No 130
>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}
Probab=83.19 E-value=15 Score=35.06 Aligned_cols=148 Identities=13% Similarity=0.010 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhc--CCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCh
Q 015951 124 DAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKL--GGLSVLVGQLNHPDTDIRKISAWILGKASQNNP 201 (397)
Q Consensus 124 d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~l--GGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp 201 (397)
...++..++..+.+ ...+....-++..+.++........-+... ..++.+..++.+++..+|..++.++-|.+--+-
T Consensus 145 ~~~l~~~l~~~~~~-~~~p~n~ml~lR~l~NlF~~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~ 223 (304)
T 3ebb_A 145 GAQFSSHLINLLNP-KGKPANQLLALRTFCNCFVGQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFH 223 (304)
T ss_dssp HHHHHHHHHHTTCT-TSCHHHHHHHHHHHHHGGGSHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHhcCC-CCChHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHh
Confidence 34555555565544 335667888899999888766544444432 123334445566899999999999988874211
Q ss_pred H--HHHHHHHcCcHHHHHHhhcC-CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHH
Q 015951 202 L--VQKQVLELGALSKLMKMVKS-SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKA 275 (397)
Q Consensus 202 ~--~Q~~vl~~g~lp~Ll~LL~s-~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA 275 (397)
+ ..+.. ...+..+.+++.. .+.+..-+++-||++++...+...+.....|....+..+...+ .+.|+..-+
T Consensus 224 ~~~~~~~~--~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~-~~~kv~~~~ 297 (304)
T 3ebb_A 224 KDHNIEGK--AQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVS-EPAKVSECC 297 (304)
T ss_dssp HSCCHHHH--HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCC-SSHHHHHHH
T ss_pred hcCCchHH--HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCC-CchhHHHHH
Confidence 0 00111 1145555566654 3567888999999999987554333333344444455555443 356655443
No 131
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=79.86 E-value=18 Score=37.03 Aligned_cols=122 Identities=13% Similarity=0.116 Sum_probs=80.7
Q ss_pred CHHHHHHHHHHHHhccCC-CCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHh
Q 015951 141 SLEDSQRALQELLILVEP-IDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKM 219 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~-iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~L 219 (397)
+...|.-|-+.+..+... .+.++ ..+..+++++...+..||..|..-|..+|.+ . . +- .....|++|
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~-~---i~--kiaDvL~Ql 108 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDEDVSIRRQAIKELPQFATG-E-N---LP--RVADILTQL 108 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T-C---HH--HHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h-h---hh--hHHHHHHHH
Confidence 456666666666655533 33333 2456677777778889999999999999986 2 1 11 256778999
Q ss_pred hcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 220 VKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 220 L~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
|.+++.......-.+|-++++.+|.+.-. .++.++..+ +..+|.++..+|..=+.
T Consensus 109 Lqtdd~~E~~~V~~sL~sllk~Dpk~tl~-------~lf~~i~~~---~e~~Rer~lkFi~~kl~ 163 (507)
T 3u0r_A 109 LQTDDSAEFNLVNNALLSIFKMDAKGTLG-------GLFSQILQG---EDIVRERAIKFLSTKLK 163 (507)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCHHHHHH-------HHHHHHHHS---CHHHHHHHHHHHHHHGG
T ss_pred HhccchHHHHHHHHHHHHHHhcChHHHHH-------HHHHHHccc---chHHHHHHHHHHHHHHh
Confidence 99988777777778888888877653211 122333443 34588888887765443
No 132
>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B
Probab=79.32 E-value=5.9 Score=34.37 Aligned_cols=89 Identities=12% Similarity=0.079 Sum_probs=63.4
Q ss_pred HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHh
Q 015951 231 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 310 (397)
Q Consensus 231 Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~l 310 (397)
..-.|+-+++..+.+.. ..+..|..-|+++ ++.++..|+.+|-.++.+ .++.+...+.+..++..++.+
T Consensus 35 ~~leicD~I~~~~~~~k-----eA~ral~krl~~~--n~~vql~AL~LLd~~vkN----cG~~Fh~evas~~Fl~el~~l 103 (163)
T 1x5b_A 35 LIMDICDKVGSTPNGAK-----DCLKAIMKRVNHK--VPHVALQALTLLGACVAN----CGKIFHLEVCSRDFATEVRAV 103 (163)
T ss_dssp HHHHHHHHHHHSSSHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----TCHHHHHHHTSHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHH----hhHHHHHHHhhHHHHHHHHHH
Confidence 34456777776543332 2345666767766 567889999999988863 556666667777888888888
Q ss_pred ccC-CChHHHHHHHHHHHHHh
Q 015951 311 TAS-ADLDLQEKALAAIKNLL 330 (397)
Q Consensus 311 L~~-~d~dv~E~aL~aL~~L~ 330 (397)
+.. .++.|+++++..|..-.
T Consensus 104 ~~~~~~~~Vk~kil~li~~W~ 124 (163)
T 1x5b_A 104 IKNKAHPKVCEKLKSLMVEWS 124 (163)
T ss_dssp HHTTCCHHHHHHHHHHHHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHH
Confidence 875 58899999998776655
No 133
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=78.74 E-value=3.4 Score=34.98 Aligned_cols=90 Identities=13% Similarity=0.123 Sum_probs=65.1
Q ss_pred HHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHH
Q 015951 230 KALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVD 309 (397)
Q Consensus 230 kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~ 309 (397)
...-.|+-+++..+.+.. ..+..|..-|+++ ++.++..|+.++-.++. +.++.+...+.+..++..++.
T Consensus 24 ~~ileicD~I~~~~~~~k-----~a~rai~Krl~~~--n~~~ql~AL~LLe~~vk----NcG~~f~~evas~~Fl~el~~ 92 (140)
T 3ldz_A 24 GLILDICDKVGQSRTGPK-----DCLRSIMRRVNHK--DPHVAMQALTLLGACVS----NCGKIFHLEVCSRDFASEVSN 92 (140)
T ss_dssp HHHHHHHHHHTTSTTHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HSCHHHHHHHSSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCHH-----HHHHHHHHHHcCC--ChHHHHHHHHHHHHHHH----hcCHHHHHHHhhHHHHHHHHH
Confidence 355567777776654333 2455667767766 55689999999988876 355555656667778888888
Q ss_pred hccCCChHHHHHHHHHHHHHh
Q 015951 310 LTASADLDLQEKALAAIKNLL 330 (397)
Q Consensus 310 lL~~~d~dv~E~aL~aL~~L~ 330 (397)
+++..++.|+++++..+...+
T Consensus 93 l~~~~~~~Vk~kil~li~~W~ 113 (140)
T 3ldz_A 93 VLNKGHPKVCEKLKALMVEWT 113 (140)
T ss_dssp HHHHSCHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHH
Confidence 887789999999998887666
No 134
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=77.44 E-value=4.9 Score=34.45 Aligned_cols=109 Identities=10% Similarity=0.113 Sum_probs=74.8
Q ss_pred cHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015951 212 ALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 290 (397)
Q Consensus 212 ~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~ 290 (397)
.+..++.-..+++ .+.-....-.|+-+++..+.+.. ..+..|..-++++ ++.++..|+.++-.++. +.
T Consensus 11 ~~~~~IekATs~~l~~~dw~~ileicD~I~~~~~~pk-----~a~ral~krl~~~--n~~v~l~AL~LLe~cvk----NC 79 (149)
T 3g2s_A 11 TLEARINRATNPLNKELDWASINGFCEQLNEDFEGPP-----LATRLLAHKIQSP--QEWEAIQALTVLETCMK----SC 79 (149)
T ss_dssp CHHHHHHHHSCTTCSSCCHHHHHHHHHHGGGSSSHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HC
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHCCCCcHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHH----hc
Confidence 3444554444432 11223456667777776654322 2455677777765 66789999999998886 35
Q ss_pred CCCcchhHHhCCcHHHHHHhccC------CChHHHHHHHHHHHHHhc
Q 015951 291 HKVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 291 ~~~~~~~l~~~g~v~~Lv~lL~~------~d~dv~E~aL~aL~~L~~ 331 (397)
++.+...+.+..++..|+.++.. .+..|+++++..+...+.
T Consensus 80 G~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 126 (149)
T 3g2s_A 80 GKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 126 (149)
T ss_dssp CHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence 66666777788889999998863 578999999988887774
No 135
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=77.14 E-value=4.6 Score=34.55 Aligned_cols=90 Identities=8% Similarity=0.089 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHh
Q 015951 231 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDL 310 (397)
Q Consensus 231 Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~l 310 (397)
..-.|+-+++..+.+.. .++..|..-|+++ ++.++..|+.+|-.++. +.++.+...+.+..++..|+.+
T Consensus 21 ~~leicD~I~~~~~~~k-----~a~rai~krl~~~--n~~vql~AL~LLe~~vk----NCG~~fh~evas~~Fl~eL~kl 89 (148)
T 1mhq_A 21 AIQNFCEQVNTDPNGPT-----HAPWLLAHKIQSP--QEKEALYALTVLEMCMN----HCGEKFHSEVAKFRFLNELIKV 89 (148)
T ss_dssp HHHHHHHHHHHSSHHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHH----HSCHHHHHHHTSHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCccHH-----HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHH----HcCHHHHHHHhhHHHHHHHHHH
Confidence 34456666665543222 2356667777766 66789999999999886 3566677778888999999998
Q ss_pred ccC------CChHHHHHHHHHHHHHhc
Q 015951 311 TAS------ADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 311 L~~------~d~dv~E~aL~aL~~L~~ 331 (397)
+.. .+..|+++++..+..-+.
T Consensus 90 ~~~k~~~~~~~~~Vk~kil~li~~W~~ 116 (148)
T 1mhq_A 90 LSPKYLGSWATGKVKGRVIEILFSWTV 116 (148)
T ss_dssp TCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred HccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 864 478999999988887763
No 136
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=75.33 E-value=8.5 Score=32.93 Aligned_cols=123 Identities=15% Similarity=0.114 Sum_probs=77.6
Q ss_pred CCHHHHHHhHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcC
Q 015951 100 LSPSELKKRQMEIKELMEKLKTPSDAQLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLN 179 (397)
Q Consensus 100 ~s~e~l~~r~~~L~ea~~~~~~~~d~~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~ 179 (397)
||++++.++...|.+.|...- ..|.+. . .+ ....=.|..-|..+...+...+....|...|.+..+-..|.
T Consensus 1 ~~~~e~~~~~~~l~~~M~~Aa-~~D~~a----~---~~-~~PA~~KlklL~~V~~~l~k~~l~~~~ld~giL~~l~~WL~ 71 (145)
T 2xpp_A 1 MDPGTVLEISRSLKKRMQDIL-KKDNAN----N---LE-GRPATGKIENVEEISDILMSKALQESLLDEGILDEIKGWLE 71 (145)
T ss_dssp ---CHHHHHHHHHHHHHHHHH-HHHHHH----H---HH-TSCCCHHHHHHHHHHHHHTCTTTHHHHHHTTHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHHHH-HHHHHH----H---Hc-CChHHHHHhhHHHHHHHHhhHHHHHHHHHcCHHHHHHHHhC
Confidence 567777666667776665421 122221 1 11 11112577888889888899999999999999999888775
Q ss_pred C------CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCC--HHHHHHHHHHH
Q 015951 180 H------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSF--VEEAVKALYTV 235 (397)
Q Consensus 180 s------~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~--~~v~~kAl~AL 235 (397)
- |+..||..-..+|.++ |-.++.+.+.|.-..++-+-++.. ++.+..|-.-+
T Consensus 72 PLpDgsLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvv~~l~k~~~et~~nk~la~~Li 131 (145)
T 2xpp_A 72 PLPDKSMPNIKIRKRLLDVLKTM----KIHKEHLVTSGVGKIVYFYSINPKESKEVRASAKALV 131 (145)
T ss_dssp CCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHCHHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHHHHHHHHC----CCCHHHhhcCCCCcchhhhhcCCccCHHHHHHHHHHH
Confidence 2 6789999999999987 434566666654444444444443 45565554433
No 137
>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A
Probab=74.05 E-value=33 Score=38.42 Aligned_cols=138 Identities=12% Similarity=0.114 Sum_probs=79.1
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHH-HHHHcCcHHHHHHhhcCCC-----HHHHHHHHHHHHHHhc---CChhcHHHHHh
Q 015951 181 PDTDIRKISAWILGKASQNNPLVQK-QVLELGALSKLMKMVKSSF-----VEEAVKALYTVSSLIR---NNLAGQEMFYV 251 (397)
Q Consensus 181 ~~~~ir~~Aa~vLg~~aqNNp~~Q~-~vl~~g~lp~Ll~LL~s~~-----~~v~~kAl~ALS~LiR---~~~~~~~~f~~ 251 (397)
.+-.....++|++|+++..-..-.+ .++- ..++.|+.+..... .-++...+|.+|...| .|+. |+
T Consensus 491 ~sW~~lea~~~aigaIag~~~~~~E~~~Lp-~vi~~Ll~L~e~~~~kd~k~~vas~i~~vlgrY~~wl~~h~~----~L- 564 (1073)
T 3gjx_A 491 WSWKNLNTLCWAIGSISGAMHEEDEKRFLV-TVIKDLLGLCEQKRGKDNKAIIASNIMYIVGQYPRFLRAHWK----FL- 564 (1073)
T ss_dssp CCHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHCHHHHHHCHH----HH-
T ss_pred CCHHHHhHHHHHHHHHHCcCCcccccchHH-HHHHHHhcccccccccchhHHHHHHHHHHHhhhHHHHHhCHH----HH-
Confidence 3578899999999999865332222 2222 46777777775432 1234455678876433 2332 22
Q ss_pred cCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHh------CCcHHHHHHh----ccCCChHHHHH
Q 015951 252 EAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRD------RFFLKSVVDL----TASADLDLQEK 321 (397)
Q Consensus 252 ~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~------~g~v~~Lv~l----L~~~d~dv~E~ 321 (397)
..-+..|...+.++ +.+++.-|+.++..+|.. .+..++. .-++..++.. ...-+++-...
T Consensus 565 ~~vl~~L~~~m~~~--~~~vq~aA~~af~~i~~~--------C~~~lv~~~~~e~~p~i~~il~~~~~~~~~l~~~~~~~ 634 (1073)
T 3gjx_A 565 KTVVNKLFEFMHET--HDGVQDMACDTFIKIAQK--------CRRHFVQVQVGEVMPFIDEILNNINTIICDLQPQQVHT 634 (1073)
T ss_dssp HHHHHHHHHHTTCC--STTHHHHHHHHHHHHHHH--------TGGGGTSCCTTCSSCHHHHHHTSHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHH--------HHHHHhhccccccchHHHHHHHHHHHHHHhcCHHHHHH
Confidence 12345555666654 456899999999999862 2222211 1133333332 22335666677
Q ss_pred HHHHHHHHhcCCh
Q 015951 322 ALAAIKNLLQLRT 334 (397)
Q Consensus 322 aL~aL~~L~~~~~ 334 (397)
...|++.++..-+
T Consensus 635 lyeav~~vi~~~p 647 (1073)
T 3gjx_A 635 FYEAVGYMIGAQT 647 (1073)
T ss_dssp HHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCC
Confidence 7777777776644
No 138
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=73.85 E-value=4.3 Score=35.55 Aligned_cols=109 Identities=10% Similarity=0.109 Sum_probs=74.1
Q ss_pred cHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015951 212 ALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 290 (397)
Q Consensus 212 ~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~ 290 (397)
.+..+|.-..++. .+.-....-.|+-+++..+.+.. .++..|..-++++ +..++..|+.+|-.++.+ .
T Consensus 13 ~~~~~IekATs~~l~~~Dw~~ileicD~I~~~~~~~k-----~A~ral~krl~~~--n~~vql~AL~LLd~~vkN----C 81 (171)
T 1juq_A 13 SLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQ-----IAVRLLAHKIQSP--QEWEALQALTVLEACMKN----C 81 (171)
T ss_dssp CHHHHHHHHTCTTCSSCCHHHHHHHHHHHHHSTTHHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----S
T ss_pred cHHHHHHHHcCCCCCCcCHHHHHHHHHHHHcCCccHH-----HHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHH----c
Confidence 3455555444432 11223445577777776654332 2356677778876 567899999999998863 4
Q ss_pred CCCcchhHHhCCcHHHHHHhccC------CChHHHHHHHHHHHHHhc
Q 015951 291 HKVEPPLFRDRFFLKSVVDLTAS------ADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 291 ~~~~~~~l~~~g~v~~Lv~lL~~------~d~dv~E~aL~aL~~L~~ 331 (397)
++.+...+.+..++..|+.++.. .+..|+++++..|..-..
T Consensus 82 G~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~ 128 (171)
T 1juq_A 82 GRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM 128 (171)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence 55566677788889999998863 378999999988887764
No 139
>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*
Probab=67.31 E-value=42 Score=37.02 Aligned_cols=151 Identities=6% Similarity=-0.020 Sum_probs=93.4
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCCh--hcHHHHHhcCc
Q 015951 177 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNL--AGQEMFYVEAG 254 (397)
Q Consensus 177 lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~--~~~~~f~~~gG 254 (397)
++.++++.++..+..||+.-..--| ...+.+.+.++.+.++|.+ ++++..|+-+|..++.... .....++..=.
T Consensus 201 ~~~~~~~~l~~~~L~~l~s~i~wi~--~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~ 276 (980)
T 3ibv_A 201 YSNAKNYGTVGLCLQVYAQWVSWIN--INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILN 276 (980)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSC--HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HhccCCHHHHHHHHHHHHHHHhhcC--HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence 3445789999999999999997544 2445566789999999976 6789999999999887643 23333333211
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhc-cCCCC-----cchhHH--hCCcHHHHHHhccCCChHHHHHHHHHH
Q 015951 255 DLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLE-NMHKV-----EPPLFR--DRFFLKSVVDLTASADLDLQEKALAAI 326 (397)
Q Consensus 255 i~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~-~~~~~-----~~~~l~--~~g~v~~Lv~lL~~~d~dv~E~aL~aL 326 (397)
+......+.....|..+..+.+.++..+..+-.. ...+. ...... =.++++.+..++..++.++-..++..+
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw 356 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFL 356 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 1222222221123556777777777766543210 01110 000111 136888888889888889988888887
Q ss_pred HHHhc
Q 015951 327 KNLLQ 331 (397)
Q Consensus 327 ~~L~~ 331 (397)
..++.
T Consensus 357 ~~~l~ 361 (980)
T 3ibv_A 357 SDLLV 361 (980)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 140
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=66.91 E-value=8.8 Score=34.98 Aligned_cols=109 Identities=12% Similarity=0.198 Sum_probs=72.1
Q ss_pred cHHHHHHhhcCCC-HHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccC
Q 015951 212 ALSKLMKMVKSSF-VEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENM 290 (397)
Q Consensus 212 ~lp~Ll~LL~s~~-~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~ 290 (397)
.+..+|.-..++. .+.-...+..|+-+++..+.+.. .++..|..=|+++ ++.++..|+.+|-.++.+ .
T Consensus 8 ~~~~~i~kAT~~~~~~~dw~~ileicD~I~~~~~~~k-----~a~ral~krl~~~--n~~v~l~aL~LLe~~vkN----c 76 (226)
T 3zyq_A 8 TFERLLDKATSQLLLETDWESILQICDLIRQGDTQAK-----YAVNSIKKKVNDK--NPHVALYALEVMESVVKN----C 76 (226)
T ss_dssp HHHHHHHHHTCTTCSSCCHHHHHHHHHHHHTTSSCHH-----HHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----H
T ss_pred hHHHHHHHHcCCCCCCcCHHHHHHHHHHHhCCCccHH-----HHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHh----c
Confidence 4455555554443 12223455667777776544332 2455677777766 667899999999999874 4
Q ss_pred CCCcchhHHhCCcHHHHHHhccC-CChHHHHHHHHHHHHHhc
Q 015951 291 HKVEPPLFRDRFFLKSVVDLTAS-ADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 291 ~~~~~~~l~~~g~v~~Lv~lL~~-~d~dv~E~aL~aL~~L~~ 331 (397)
++.+...+.+..++..|+.+++. .+..|+++++..|...+.
T Consensus 77 G~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~ 118 (226)
T 3zyq_A 77 GQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH 118 (226)
T ss_dssp CHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred chHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 55555666667777777777754 478999999988887773
No 141
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=66.64 E-value=18 Score=38.05 Aligned_cols=161 Identities=17% Similarity=0.089 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcC
Q 015951 143 EDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS 222 (397)
Q Consensus 143 e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s 222 (397)
-.|+.+.+.|.-+ ..++.. ...+..++..+..+.=++|-.+.-.|..+ .+...+ -.+++|.++.-|.+
T Consensus 243 PVRETaAQtLGaL-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~DLL~~---Ld~Vv~aVL~GL~D 310 (800)
T 3oc3_A 243 PVRDAAAYLLSRI-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYL---KEFVED---KDGLCRKLVSLLSS 310 (800)
T ss_dssp HHHHHHHHHHHHH-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---GGGCCC---HHHHHHHHHHHTTC
T ss_pred ehHHHHHHHHHHH-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHH---HHHHHH---HHHHHHHHHhhcCC
Confidence 3566666666665 334332 34555555555667777887777777766 121211 13568888888999
Q ss_pred CCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCC
Q 015951 223 SFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF 302 (397)
Q Consensus 223 ~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g 302 (397)
.++.||..|..+|..++ .+.....++ .--|..|.++ .+=+. .....+.+|+.|++.. .. .-....
T Consensus 311 ~DDDVRAVAAetLiPIA--~p~~l~~LL-~iLWd~L~~L-DDLSA---STgSVMdLLAkL~s~p-----~~---a~~dp~ 375 (800)
T 3oc3_A 311 PDEDIKLLSAELLCHFP--ITDSLDLVL-EKCWKNIESE-ELISV---SKTSNLSLLTKIYREN-----PE---LSIPPE 375 (800)
T ss_dssp SSHHHHHHHHHHHTTSC--CSSTHHHHH-HHHHHHHHTC-CSCCT---THHHHHHHHHHHHHHC-----TT---CCCCSG
T ss_pred cccHHHHHHHHHhhhhc--chhhHHHHH-HHHHHHhhhh-cccch---hhHHHHHHHHHHHcCC-----cc---cccChH
Confidence 89999999999999888 333333332 1233444433 21111 2446788999998742 11 111237
Q ss_pred cHHHHHHhccCCChHHHHHHHHHHHHHh
Q 015951 303 FLKSVVDLTASADLDLQEKALAAIKNLL 330 (397)
Q Consensus 303 ~v~~Lv~lL~~~d~dv~E~aL~aL~~L~ 330 (397)
.++.|--.+++.-+.||..++.+|.++.
T Consensus 376 LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 376 RLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp GGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred HHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 8888888999999999999999998877
No 142
>1elk_A Target of MYB1; superhelix of helices, endocytosis/exocytosis complex; 1.50A {Homo sapiens} SCOP: a.118.9.2
Probab=63.60 E-value=27 Score=29.85 Aligned_cols=111 Identities=11% Similarity=0.080 Sum_probs=71.3
Q ss_pred HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHH-HHH
Q 015951 231 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKS-VVD 309 (397)
Q Consensus 231 Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~-Lv~ 309 (397)
..-.|+-+++..+.+.. .++..|..-|++. .+..++..|+.++-.++.+ .++.+...+.+..++.. ++.
T Consensus 36 ~~leicD~I~~~~~~~k-----~a~ral~krl~~~-~n~~v~l~AL~LLd~~vkN----cG~~fh~eva~~~fl~e~Lvk 105 (157)
T 1elk_A 36 LNMEICDIINETEEGPK-----DALRAVKKRIVGN-KNFHEVMLALTVLETCVKN----CGHRFHVLVASQDFVESVLVR 105 (157)
T ss_dssp HHHHHHHHHHHSSSHHH-----HHHHHHHHHHTTC-CCHHHHHHHHHHHHHHHHH----SCHHHHHHHTSHHHHHHHTHH
T ss_pred HHHHHHHHHhCCCccHH-----HHHHHHHHHhccC-CCHHHHHHHHHHHHHHHHH----hCHHHHHHHhhHHHHHHHHHH
Confidence 34456667765543332 2445667777642 2567889999999988863 55666666777888888 788
Q ss_pred hccC---CChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHhhh
Q 015951 310 LTAS---ADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEVML 362 (397)
Q Consensus 310 lL~~---~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l~~ 362 (397)
++.. ++..|+++++..+..-+. .|+...++ ..++.-|+.+..
T Consensus 106 ~~~~k~~~~~~Vk~kil~li~~W~~-------~f~~~p~l----~~i~~~Y~~Lk~ 150 (157)
T 1elk_A 106 TILPKNNPPTIVHDKVLNLIQSWAD-------AFRSSPDL----TGVVTIYEDLRR 150 (157)
T ss_dssp HHSTTTCCCHHHHHHHHHHHHHHHH-------HHTTCTTC----HHHHHHHHHHHH
T ss_pred HhccCCCCcHHHHHHHHHHHHHHHH-------HcCCCcch----HHHHHHHHHHHH
Confidence 8743 356899999988777663 34433333 445556665543
No 143
>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*
Probab=62.62 E-value=1.2e+02 Score=29.51 Aligned_cols=153 Identities=10% Similarity=0.055 Sum_probs=110.9
Q ss_pred HHHHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHH
Q 015951 126 QLIQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQK 205 (397)
Q Consensus 126 ~lmk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~ 205 (397)
+++-.++.-+.+++ --..+=.-|.+|+..-..|.-+-..+-+..+.++...++=+|-.-|...+-.+-..++..-.
T Consensus 125 eil~~L~~gYe~~d----iAl~~G~mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lva 200 (341)
T 1upk_A 125 NILFMLLKGYESPE----IALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSA 200 (341)
T ss_dssp HHHHHHHHGGGSTT----THHHHHHHHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHHHHhhccch----hHhHHHHHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHH
Confidence 44444555554443 22233444566666555566666666777888899999999999999999999988887777
Q ss_pred HHHHcC---cHHHHHHhhcCCCHHHHHHHHHHHHHHhcC--ChhcHHHHHhc-CcHHHHHHhhcCCCccHHHHHHHHHHH
Q 015951 206 QVLELG---ALSKLMKMVKSSFVEEAVKALYTVSSLIRN--NLAGQEMFYVE-AGDLMLQDILGNSSFEIRLHRKAVSLV 279 (397)
Q Consensus 206 ~vl~~g---~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~--~~~~~~~f~~~-gGi~~L~~lL~s~~~d~klr~kA~~lL 279 (397)
.++..+ .+...-+|+.|++=-.++.++--||-++-+ |......++.. .-+..++.+|++++ ..+|..|....
T Consensus 201 efL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~s--k~Iq~EAFhVF 278 (341)
T 1upk_A 201 EFLEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKS--RNIQFEAFHVF 278 (341)
T ss_dssp HHHHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSC--HHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCch--hchhhhhhhhe
Confidence 777654 467788899998877899999999998765 54445555543 46889999999874 45788998888
Q ss_pred HHHhh
Q 015951 280 GDLAK 284 (397)
Q Consensus 280 ~~L~~ 284 (397)
.=++.
T Consensus 279 KvFVA 283 (341)
T 1upk_A 279 KVFVA 283 (341)
T ss_dssp HHHHH
T ss_pred eeeee
Confidence 76665
No 144
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=61.00 E-value=71 Score=35.99 Aligned_cols=105 Identities=11% Similarity=-0.032 Sum_probs=69.9
Q ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhc--CCCCHHHHHHHHHHHHHHhcCC----h
Q 015951 128 IQIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQL--NHPDTDIRKISAWILGKASQNN----P 201 (397)
Q Consensus 128 mk~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL--~s~~~~ir~~Aa~vLg~~aqNN----p 201 (397)
+.+++..+-++..+.+.|..|-+.|..+-.+. .+|..+...| .+.++.+|..|+.+|-+..+.+ |
T Consensus 13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~ 83 (1204)
T 3a6p_A 13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMS 83 (1204)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSC
T ss_pred HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCC
Confidence 45566666666667677888877776643322 3677666544 4568999999999999988641 3
Q ss_pred HHHHHHHHcCcHHHHHHhhcC---CCHHHHHHHHHHHHHHhcC
Q 015951 202 LVQKQVLELGALSKLMKMVKS---SFVEEAVKALYTVSSLIRN 241 (397)
Q Consensus 202 ~~Q~~vl~~g~lp~Ll~LL~s---~~~~v~~kAl~ALS~LiR~ 241 (397)
.-+...++...+..+.+.... .+..++.+...+|+.+++.
T Consensus 84 ~e~k~~Ir~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~ 126 (1204)
T 3a6p_A 84 RLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKR 126 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHH
Confidence 334444444466665544321 3467899999999998775
No 145
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=59.80 E-value=1.1e+02 Score=28.23 Aligned_cols=132 Identities=8% Similarity=0.038 Sum_probs=84.0
Q ss_pred HhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc-CCCHHHHHHHHHHHHHHhc-CChhcHHHHHhcC
Q 015951 176 GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK-SSFVEEAVKALYTVSSLIR-NNLAGQEMFYVEA 253 (397)
Q Consensus 176 ~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~-s~~~~v~~kAl~ALS~LiR-~~~~~~~~f~~~g 253 (397)
.+.+++..++|..|+.+||.+ ... ...++.+...+. .++=.|+.-+..+++.++. .+|..
T Consensus 78 ~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-------- 139 (240)
T 3l9t_A 78 LAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-------- 139 (240)
T ss_dssp HHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT--------
T ss_pred HHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH--------
Confidence 455888899999999999988 211 125677776444 3444678888888888774 33331
Q ss_pred cHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhcCC
Q 015951 254 GDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQLR 333 (397)
Q Consensus 254 Gi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~~~ 333 (397)
-++.+.....++ +.-+|+-|.-.+.--+. .+..+.. -.-+++.+..+...++.-||.....+|..++...
T Consensus 140 ~l~~~~~W~~d~--n~~VRR~Ase~~rpW~~------~~~~k~d--p~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~ 209 (240)
T 3l9t_A 140 ALPIIDEWLKSS--NLHTRRAATEGLRIWTN------RPYFKEN--PNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF 209 (240)
T ss_dssp THHHHHHHHHCS--SHHHHHHHHHHTCSGGG------STTTTTC--HHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhcCC--CHHHHHHHHHhhHHHhc------cchhhcC--HHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence 345667777776 56678766554432221 0111100 0124455555666678889999999999999887
Q ss_pred hH
Q 015951 334 TT 335 (397)
Q Consensus 334 ~~ 335 (397)
++
T Consensus 210 Pd 211 (240)
T 3l9t_A 210 PD 211 (240)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 146
>3rru_A TOM1L1 protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, super-helical protein; 3.00A {Homo sapiens}
Probab=57.03 E-value=34 Score=29.21 Aligned_cols=68 Identities=10% Similarity=0.154 Sum_probs=49.6
Q ss_pred HhcC-CCCHHHHHHHHHHHHHHhcCC-hHHHHHHHHcCcHHH-HHHhhcCC---CHHHHHHHHHHHHHHhcCCh
Q 015951 176 GQLN-HPDTDIRKISAWILGKASQNN-PLVQKQVLELGALSK-LMKMVKSS---FVEEAVKALYTVSSLIRNNL 243 (397)
Q Consensus 176 ~lL~-s~~~~ir~~Aa~vLg~~aqNN-p~~Q~~vl~~g~lp~-Ll~LL~s~---~~~v~~kAl~ALS~LiR~~~ 243 (397)
.-|. +.++.++..|..+|-++++|. +.++..|.....+.. |+++++.. +..|+.|.+..|-+-...++
T Consensus 60 KRl~~~~n~~~~l~AL~LLe~cvkNCG~~fh~eiask~Fl~e~L~kl~~~~~~~~~~Vk~kil~li~~Wa~~F~ 133 (152)
T 3rru_A 60 KRISKNYNHKEIQLTLSLIDMCVQNCGPSFQSLIVKKEFVKENLVKLLNPRYNLPLDIQNRILNFIKTWSQGFP 133 (152)
T ss_dssp HHHTTCCBHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHTTTTGGGGSGGGCCCHHHHHHHHHHHHHHHTCCS
T ss_pred HHHcCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHhcCCCCCcHHHHHHHHHHHHHHHHHhC
Confidence 3344 357888888999999999985 446777766667764 77888643 35789999988888766554
No 147
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=47.05 E-value=23 Score=31.83 Aligned_cols=89 Identities=6% Similarity=-0.003 Sum_probs=61.2
Q ss_pred HHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc
Q 015951 232 LYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT 311 (397)
Q Consensus 232 l~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL 311 (397)
+-.|+-+++..+.+... .+..|..-|+++ ++.++..|+.+|-.++.+ .++.+...+.+..++..|+.++
T Consensus 26 ~leicd~i~~~~~~~k~-----a~r~l~krl~~~--n~~~~l~aL~Lle~~vkN----cG~~f~~eva~~~fl~~l~~l~ 94 (220)
T 1dvp_A 26 ILLICDEINQKDVTPKN-----AFAAIKKKMNSP--NPHSSCYSLLVLESIVKN----CGAPVHEEVFTKENCEMFSSFL 94 (220)
T ss_dssp HHHHHHHHHTTSSCHHH-----HHHHHHHHHTCS--SHHHHHHHHHHHHHHHHH----SHHHHHHHHSSHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCcCHHH-----HHHHHHHHHcCC--CHHHHHHHHHHHHHHHhc----cCHHHHHHHHhHHHHHHHHHHh
Confidence 44577777765543332 344566667765 567899999999999873 3444555566667778887777
Q ss_pred cC-CChHHHHHHHHHHHHHhc
Q 015951 312 AS-ADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 312 ~~-~d~dv~E~aL~aL~~L~~ 331 (397)
.. .+..|+++++..+.....
T Consensus 95 ~~~~~~~Vk~kil~li~~W~~ 115 (220)
T 1dvp_A 95 ESTPHENVRQKMLELVQTWAY 115 (220)
T ss_dssp HHCSCHHHHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHH
Confidence 54 478999999988777663
No 148
>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}
Probab=43.55 E-value=2e+02 Score=32.28 Aligned_cols=131 Identities=8% Similarity=-0.051 Sum_probs=83.0
Q ss_pred CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc--CCCHHHHHHHHHHHHHHhcCC----hhcHHHHHhcCc
Q 015951 181 PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK--SSFVEEAVKALYTVSSLIRNN----LAGQEMFYVEAG 254 (397)
Q Consensus 181 ~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~--s~~~~v~~kAl~ALS~LiR~~----~~~~~~f~~~gG 254 (397)
++++.|..|-..|..+-++ | .+.+.+...|. +.+..+|--|+..|-+.++.+ ++.....++..-
T Consensus 25 ~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e~k~~Ir~~l 94 (1204)
T 3a6p_A 25 STQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSV 94 (1204)
T ss_dssp CCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 4778899998888776443 2 24444444443 445788888888888877652 333444444444
Q ss_pred HHHHHHhhcCC-CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHHHHHHHHHHHHhc
Q 015951 255 DLMLQDILGNS-SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQEKALAAIKNLLQ 331 (397)
Q Consensus 255 i~~L~~lL~s~-~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~E~aL~aL~~L~~ 331 (397)
+..+...-... ..+..+|.+.+.++..++... -+... ..+++.++.++++ +...++.++.+|..|..
T Consensus 95 l~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d----~p~~W-----p~ll~~L~~~~~~-~~~~~e~~L~iL~~L~E 162 (1204)
T 3a6p_A 95 MELIANGTLNILEEENHIKDALSRIVVEMIKRE----WPQHW-----PDMLIELDTLSKQ-GETQTELVMFILLRLAE 162 (1204)
T ss_dssp HHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHH----STTTC-----TTHHHHHHHHHHT-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHHHHHh----Ccccc-----hHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence 44444332110 124679999999999998631 22222 3567778887766 55778889999888864
No 149
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=39.43 E-value=1.8e+02 Score=24.80 Aligned_cols=57 Identities=12% Similarity=0.168 Sum_probs=40.5
Q ss_pred CHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCC---CCHHHHHHHHHHHHHHhcC
Q 015951 141 SLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNH---PDTDIRKISAWILGKASQN 199 (397)
Q Consensus 141 s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s---~~~~ir~~Aa~vLg~~aqN 199 (397)
...+|+.+..-|..|...+=+..+|.+ |+..++..|.. .-|.+-..-+..++.++..
T Consensus 57 k~~ere~~s~LL~~L~~~~ls~~~i~~--Gf~~lle~ldDl~iDiP~a~~~la~fiarav~d 116 (165)
T 2rg8_A 57 KASHREMTSKLLSDLCGTVMSTTDVEK--SFDKLLKDLPELALDTPRAPQLVGQFIARAVGD 116 (165)
T ss_dssp CHHHHHHHHHHHHHHBTTTBCHHHHHH--HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHhChhhcccccchHHHHHHHHHHHHHc
Confidence 346677777777777666666777775 88888887754 5677777777788777654
No 150
>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1
Probab=36.96 E-value=2.1e+02 Score=31.78 Aligned_cols=58 Identities=9% Similarity=0.080 Sum_probs=40.4
Q ss_pred CHHHHHHhcCC-------CCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhc--CCCHHHHHHHHHHH
Q 015951 170 GLSVLVGQLNH-------PDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVK--SSFVEEAVKALYTV 235 (397)
Q Consensus 170 Gl~~Li~lL~s-------~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~--s~~~~v~~kAl~AL 235 (397)
.++.|.++|.. ....||..|.++|..++...|.. +-+.|++++. ..+.++|..|+..|
T Consensus 472 ~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~--------v~~il~~i~~n~~e~~EvRiaA~~~L 538 (1056)
T 1lsh_A 472 SIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEIVLPIFLNVAIKSELRIRSCIVF 538 (1056)
T ss_dssp GHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHHHHHHHHCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHH--------HHHHHHHHhcCCCCChHHHHHHHHHH
Confidence 56777788742 23568899999999999777632 2344667773 44578888887766
No 151
>4flb_A Regulation of nuclear PRE-mRNA domain-containing; structural genomics consortium, SGC, protein binding; 1.80A {Homo sapiens}
Probab=36.06 E-value=42 Score=27.38 Aligned_cols=62 Identities=16% Similarity=0.313 Sum_probs=44.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015951 171 LSVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 242 (397)
Q Consensus 171 l~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~ 242 (397)
+...++-|+.+...|+..+.||+-+.-. -.. .+..+.+-+...+++-+...+|-+..++++.
T Consensus 10 l~~~L~~L~~s~~sI~~~s~w~l~h~~~-----a~~-----Iv~~i~~~l~~~~~~~KL~~LYL~ndIl~ns 71 (132)
T 4flb_A 10 LDRKFQSVTNTMESIQGLSSWCIENKKH-----HST-----IVYHWMKWLRRSAYPHRLNLFYLANDVIQNC 71 (132)
T ss_dssp HHHHHHHCCSSHHHHHHHHHHHHHTGGG-----HHH-----HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCcccHHHHHHHHHHHHHhHHH-----HHH-----HHHHHHHHHHcCChhhHHHHHHHHHHHHHHh
Confidence 4556667788889999999999986532 122 2334444555566777889999999999875
No 152
>1n4k_A Inositol 1,4,5-trisphosphate receptor type 1; IP3 receptor, IP3-binding core, calcium channel,protein- ligand complex, B-trefoil fold; HET: I3P; 2.20A {Mus musculus} SCOP: a.118.22.1 b.42.6.1
Probab=36.03 E-value=2.7e+02 Score=27.05 Aligned_cols=110 Identities=18% Similarity=0.246 Sum_probs=65.7
Q ss_pred HHHHHHHHHhhCCCCCHHHH---HHHHHHHHhccCCCCc----------------h-hHHHhcCCHHHHHHhcCCC---C
Q 015951 126 QLIQIAIDDLNNSTLSLEDS---QRALQELLILVEPIDN----------------A-NDLSKLGGLSVLVGQLNHP---D 182 (397)
Q Consensus 126 ~lmk~~i~~L~~~~~s~e~k---~~AL~~L~~Lve~iDn----------------A-~~~~~lGGl~~Li~lL~s~---~ 182 (397)
.++...+..+.+...+..++ ..+|++|..++.+.++ . +-|...|-+..|+.+|..+ +
T Consensus 228 ~~l~~f~~~l~~~~i~~~~~~~v~~~L~dLi~F~~~~~~~~~~~l~~~~g~p~r~RQkLlrEq~il~ll~~iL~~~f~~~ 307 (381)
T 1n4k_A 228 KVLGSIAGKLEKGTITQNERRSVTKLLEDLVYFVTGGTNSGQDVLEVVFSKPNRERQKLMREQNILKQIFKLLQAPFTDC 307 (381)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHTTTSCCSSCSGGGGGCCCCHHHHHHHHHTTHHHHHHHHHHGGGC--
T ss_pred HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHhcCcchhcccchhhhcCCccHHHHHHHHhhChHHHHHHHHHhhcccc
Confidence 34555666666555554433 3457777776665432 1 2345567788888888543 1
Q ss_pred -------------------HHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCC
Q 015951 183 -------------------TDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNN 242 (397)
Q Consensus 183 -------------------~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~ 242 (397)
..|-...-.+|..++++|.+.|..+.+ .++.+...+..+ .-|.-+|-.++.+|
T Consensus 308 ~~~~~~~~~~l~~~~~~~~~~i~~l~Y~LL~~~~~~~r~Nq~y~ak--~~~~~q~qig~~-----~~a~d~i~~ll~nN 379 (381)
T 1n4k_A 308 GDGPMLRLEELGDQRHAPFRHICRLCYRVLRHSQQDYRKNQEYIAK--QFGFMQKQIGYD-----VLAEDTITALLHNN 379 (381)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH--HHHHHHHHHCTT-----HHHHHHHHHHHTTC
T ss_pred CccchhhHHHhcchhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHhCcc-----ccHHHHHHHHHhcC
Confidence 125556778888888899999888766 355555555431 23444555555554
No 153
>1sz9_A PCF11 protein; RNA polymerase II CTD interacting domain, arm repeats, transcription; 2.10A {Saccharomyces cerevisiae} SCOP: a.118.9.4 PDB: 1sza_A* 2bf0_X
Probab=35.21 E-value=1.7e+02 Score=24.35 Aligned_cols=91 Identities=7% Similarity=0.072 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHH
Q 015951 180 HPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQ 259 (397)
Q Consensus 180 s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~ 259 (397)
.+-+.|.....||+-+. ..-..+ +..+-+-+...+++-+.-++|-+-+++++...-....+..+-.+.+.
T Consensus 22 nSk~~I~~LT~~a~~~~-----~~a~~I-----v~~i~~~i~k~~p~~KL~~LYL~DsIvkN~g~~y~~~F~~~l~~~f~ 91 (144)
T 1sz9_A 22 NSRPIITTLTKLAEENI-----SCAQYF-----VDAIESRIEKCMPKQKLYAFYALDSICKNVGSPYTIYFSRNLFNLYK 91 (144)
T ss_dssp CCHHHHHHHHHHHHHTG-----GGHHHH-----HHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCTTHHHHHHTTHHHHHH
T ss_pred ccHhHHHHHHHHHHHHH-----HHHHHH-----HHHHHHHhccCCHhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Confidence 34456666666666543 222222 23333444455677889999999999998655455556667777777
Q ss_pred HhhcCCCccHHHHHHHHHHHHHH
Q 015951 260 DILGNSSFEIRLHRKAVSLVGDL 282 (397)
Q Consensus 260 ~lL~s~~~d~klr~kA~~lL~~L 282 (397)
+..... +...|.+...++.-=
T Consensus 92 ~~~~~~--d~~~r~k~~rL~~~W 112 (144)
T 1sz9_A 92 RTYLLV--DNTTRTKLINMFKLW 112 (144)
T ss_dssp HHHHTS--CHHHHHHHHHHHHHH
T ss_pred HHHHhC--CHHHHHHHHHHHHHH
Confidence 777654 456777777766543
No 154
>3gae_A Protein DOA1; UFD3, CDC48, armadillo repeat, nucleus, phosphoprotein, UBL conjugation pathway, WD repeat, nuclear protein; 1.60A {Saccharomyces cerevisiae}
Probab=34.97 E-value=1e+02 Score=28.26 Aligned_cols=164 Identities=12% Similarity=0.127 Sum_probs=90.3
Q ss_pred CCCHHHHHHhHHHHHHHHHhcCCCCHHHHH-HHHHHHhhCCCCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHH-H
Q 015951 99 RLSPSELKKRQMEIKELMEKLKTPSDAQLI-QIAIDDLNNSTLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLV-G 176 (397)
Q Consensus 99 ~~s~e~l~~r~~~L~ea~~~~~~~~d~~lm-k~~i~~L~~~~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li-~ 176 (397)
+++|+++. -+..+++.+ ++..+.+ .-+.+++.+= + .+..++|-++-++-+...+..+.. ++ .
T Consensus 34 ~ls~~el~----~l~~~l~~l--~~~~~~~~~~~~ki~~~W--P--~~fP~lDllRl~~~~~~~~~~l~~------~l~~ 97 (253)
T 3gae_A 34 TFDDEILA----QIGGALHDI--DESWELLLSFANTIRSNW--E--IKTPAYDIVRLIVKKLPYSSDIKD------YIEE 97 (253)
T ss_dssp CSCHHHHH----HHHHHHTCH--HHHHHHHHHHHHHHHHHC--S--CCHHHHHHHHHHGGGCSCGGGGHH------HHHH
T ss_pred CCCHHHHH----HHHHHHhcc--cccHHHHHHHHHHHHHhC--C--ccchHHHHHHHHHcCCchHHHHHH------HHHH
Confidence 78998763 344444321 1222222 2233444332 2 477799999988877776654443 33 2
Q ss_pred hcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcC----C----CHHHHHHH---HHHHHHHhcCChhc
Q 015951 177 QLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKS----S----FVEEAVKA---LYTVSSLIRNNLAG 245 (397)
Q Consensus 177 lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s----~----~~~v~~kA---l~ALS~LiR~~~~~ 245 (397)
.+.+.++..+..++++++|+.++.+.-++.+........++..+.+ . +..++..+ ++-+|....+.+.
T Consensus 98 ~~~~~~~~~~ml~lR~l~NlF~~~~~g~~l~~~~~~~~~i~~~i~~~~~~~~~~~~~nl~iA~ATl~~N~av~~~~~~~- 176 (253)
T 3gae_A 98 GLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNS- 176 (253)
T ss_dssp HTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHTSCS-
T ss_pred hcCCCchhHHHHHHHHHHHcccCCchHHHHHhcchhHHHHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHHhhccc-
Confidence 3446688999999999999998755345555543334555554422 1 12344333 3333433332221
Q ss_pred HHHHHhcCcHHHHHHhhcC----C---CccHHHHHHHHHHHHHHhh
Q 015951 246 QEMFYVEAGDLMLQDILGN----S---SFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 246 ~~~f~~~gGi~~L~~lL~s----~---~~d~klr~kA~~lL~~L~~ 284 (397)
+......+..++.. . ..+.....+++-++.+|+.
T Consensus 177 -----~~e~~~~l~~~i~~~~~~~e~~~~d~Ea~yR~LvAlGtL~~ 217 (253)
T 3gae_A 177 -----DLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 217 (253)
T ss_dssp -----CTTHHHHHHHHHHTTTTTSHHHHHSHHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHHHHh
Confidence 12233444554442 1 1244577888999999885
No 155
>2xpp_A IWS1, ECU08_0440; transcription, elongation, histone chaperone, RNA polymerase mRNA export; 1.74A {Encephalitozoon cuniculi} PDB: 2xpo_A 2xpn_A 2xpl_A
Probab=31.37 E-value=1.7e+02 Score=24.66 Aligned_cols=80 Identities=14% Similarity=0.125 Sum_probs=56.6
Q ss_pred ChHHHHHHHHcCcHHHHHHhhcCC------CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHh-hcCCCccHHHH
Q 015951 200 NPLVQKQVLELGALSKLMKMVKSS------FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDI-LGNSSFEIRLH 272 (397)
Q Consensus 200 Np~~Q~~vl~~g~lp~Ll~LL~s~------~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~l-L~s~~~d~klr 272 (397)
....|..|++.|++..+-..|.-- +-.+|...+.+|..+ |-..+.+.+. |+.-.+.. -+++......|
T Consensus 50 k~~l~~~~ld~giL~~l~~WL~PLpDgsLP~~~Ir~~lL~~L~~l----PI~~e~Lk~S-glGkvv~~l~k~~~et~~nk 124 (145)
T 2xpp_A 50 SKALQESLLDEGILDEIKGWLEPLPDKSMPNIKIRKRLLDVLKTM----KIHKEHLVTS-GVGKIVYFYSINPKESKEVR 124 (145)
T ss_dssp CTTTHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHH-CHHHHHHHHHHCTTSCHHHH
T ss_pred hHHHHHHHHHcCHHHHHHHHhCcCCCCCCCCHHHHHHHHHHHHHC----CCCHHHhhcC-CCCcchhhhhcCCccCHHHH
Confidence 355899999999999998888732 246788888888876 4434555544 55544444 45776677889
Q ss_pred HHHHHHHHHHhh
Q 015951 273 RKAVSLVGDLAK 284 (397)
Q Consensus 273 ~kA~~lL~~L~~ 284 (397)
+.|-.++..-..
T Consensus 125 ~la~~Li~~WsR 136 (145)
T 2xpp_A 125 ASAKALVQKWTN 136 (145)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999888877654
No 156
>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*
Probab=30.98 E-value=3.5e+02 Score=26.81 Aligned_cols=119 Identities=9% Similarity=0.067 Sum_probs=74.8
Q ss_pred HHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhc
Q 015951 232 LYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLT 311 (397)
Q Consensus 232 l~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL 311 (397)
.+-|-+++-|...+.+.|++..|+..+..+.+-++.+ +.+..+.++-..+..+ +. -..--...++-++..+
T Consensus 263 ~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~--l~RaG~KLLLQVSDak------sL-~~t~L~e~LPFi~~~i 333 (619)
T 3c2g_A 263 TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNND--LIRAGCKLLLQVSDAK------AL-AKTPLENILPFLLRLI 333 (619)
T ss_dssp HHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHH--HHHHHHHHHHHHTTCG------GG-GTSCCTTHHHHHHHHH
T ss_pred HHHHHHHHhcccccccceeecccceeEEEEeecCCcH--HHHhhhheeeeecchH------HH-hhccccccchHHHHHh
Confidence 4556678889999999999999999999999987543 6666777776655321 00 0011123444555444
Q ss_pred -cCCChHHHHHHHHHHHHHhcCChHHHHHHHhcCChHHHHHHHHHHhHHh
Q 015951 312 -ASADLDLQEKALAAIKNLLQLRTTEALVLKDFCGLDTALERLRQQLQEV 360 (397)
Q Consensus 312 -~~~d~dv~E~aL~aL~~L~~~~~~~r~~~~~~~gL~~~L~~Lr~~~~~l 360 (397)
.+++.++.......|.+.+.+... -+.+.=..|--.+|...-.+|..+
T Consensus 334 ~~h~eDdvvYSGTGFLSNVVAHKq~-VKelAI~~nAI~LLh~~I~ky~~L 382 (619)
T 3c2g_A 334 EIHPDDEVIYSGTGFLSNVVAHKQH-VKDIAIRSNAIFLLHTIISKYPRL 382 (619)
T ss_dssp HHCCCHHHHHHHHHHHHHHSTTCHH-HHHHHHHTTHHHHHHHHHHTSCCG
T ss_pred ccCCCcceEEecchHHHHHHhcccc-hHHHHhccCcHHHHHHHHhhCCCh
Confidence 356778999999999998887542 222222334334455555555444
No 157
>3hjl_A Flagellar motor switch protein FLIG; armadillo repeat motif, superhelix, conformational plasticit repeat, torque generation; 2.40A {Aquifex aeolicus}
Probab=30.05 E-value=1.2e+02 Score=29.08 Aligned_cols=75 Identities=15% Similarity=0.100 Sum_probs=42.7
Q ss_pred HHHHHHhcC-ChHHHHHHHHcCcHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHH----------------HHhcC
Q 015951 191 WILGKASQN-NPLVQKQVLELGALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEM----------------FYVEA 253 (397)
Q Consensus 191 ~vLg~~aqN-Np~~Q~~vl~~g~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~----------------f~~~g 253 (397)
..|+++.+| +|.....++.+=--..--.+|..=+++.+...++.|+.+-.-+|..... +-..|
T Consensus 119 ~~la~~i~~EhPQtiAlILs~L~p~~AA~vL~~Lp~~~r~ev~~Ria~l~~v~p~~l~~le~~L~~~l~~~~~~~~~~~g 198 (329)
T 3hjl_A 119 RILASLLKNEHPQTIALFLSQLSPKKSAEIIQNLPEELKKEVVKRIATLENVNVQYVKELAQILLEEISSLGAKEALKLE 198 (329)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSCHHHHHHHHHTSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHhCCHHHHHHHHHcCCHHHHHHHHHhCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHhcccccccccc
Confidence 344444443 6666666665533333334444445566667777777665555543322 22468
Q ss_pred cHHHHHHhhcCC
Q 015951 254 GDLMLQDILGNS 265 (397)
Q Consensus 254 Gi~~L~~lL~s~ 265 (397)
|+..+..+|+.-
T Consensus 199 G~~~vA~ILN~~ 210 (329)
T 3hjl_A 199 GTAVAAELLNTL 210 (329)
T ss_dssp HHHHHHHHHHHS
T ss_pred cHHHHHHHHhcC
Confidence 999999998853
No 158
>1vsy_5 Proteasome activator BLM10; 20S proteasome BLM10, hydrolase, nucleus, phosphoprotein, PR proteasome, threonine protease; 3.00A {Saccharomyces cerevisiae} PDB: 3l5q_6
Probab=28.74 E-value=1e+02 Score=34.20 Aligned_cols=160 Identities=14% Similarity=0.082 Sum_probs=89.3
Q ss_pred HHhc-CCCCHHHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhccC----CCCchhHHHhcCCHHHHHHhcCCCC-HHHH
Q 015951 116 MEKL-KTPSDAQLIQIAIDDLNNST---LSLEDSQRALQELLILVE----PIDNANDLSKLGGLSVLVGQLNHPD-TDIR 186 (397)
Q Consensus 116 ~~~~-~~~~d~~lmk~~i~~L~~~~---~s~e~k~~AL~~L~~Lve----~iDnA~~~~~lGGl~~Li~lL~s~~-~~ir 186 (397)
+..+ ..+-..+.+...+..+..-. .+- .|..+|..++-++- -+..... ...+..++.+|.++. .+||
T Consensus 786 l~~ls~~~~~~~~~~~~l~~l~~~~~~s~sW-~R~~~L~~lq~~~f~n~f~l~~~~~---~~i~~~v~~~L~D~q~~EVR 861 (997)
T 1vsy_5 786 YAGLGYMPIRKNHVAAIVDYVCSSNVALSSN-QTKLQLAFIQHFLSAELLQLTEEEK---NKILEFVVSNLYNEQFVEVR 861 (997)
T ss_dssp HHHTSSSCCCHHHHHHHHHHSSCTTTTSCSS-SHHHHHHHHHHHHHHHTTTSCTTHH---HHTHHHHTTTTTCSSCHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHHHHcCHHHH---HHHHHHHHHHhcCCccHHHH
Confidence 4444 34445666666666664422 244 67777666553321 1111111 234778889999999 9999
Q ss_pred HHHHHHHHHHhcCC-h-HHHHHHHH---cCc-----HHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcH--HHHHhcCc
Q 015951 187 KISAWILGKASQNN-P-LVQKQVLE---LGA-----LSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQ--EMFYVEAG 254 (397)
Q Consensus 187 ~~Aa~vLg~~aqNN-p-~~Q~~vl~---~g~-----lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~--~~f~~~gG 254 (397)
..|+.+|+.+.++. + .....+++ ... ...+-+-... +...+-.|+.+||+++..+|... ..++ -+-
T Consensus 862 e~Aa~tLsgll~c~~~~~~~~~li~~f~~~~~~~~~~~~~~~~~~~-~~~~rH~aVLgL~AlV~a~Py~vP~P~w~-P~~ 939 (997)
T 1vsy_5 862 VRAASILSDIVHNWKEEQPLLSLIERFAKGLDVNKYTSKERQKLSK-TDIKIHGNVLGLGAIISAFPYVFPLPPWI-PKN 939 (997)
T ss_dssp HHHHHHHHHHHHSCCSHHHHHHHHHHHTTSSTTTSSCHHHHHHHHH-HCHHHHHHHHHHHHHHTTCSCCSSCCTHH-HHH
T ss_pred HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhcccccccccccch-HHHHHHHHHHHHHHHHhhCCCCCCCCccc-HHH
Confidence 99999999999887 5 32222221 111 1111110000 01235689999999999988764 2332 122
Q ss_pred HHHHHHhhcCCCccHHHHHHHHHHHHHHhh
Q 015951 255 DLMLQDILGNSSFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 255 i~~L~~lL~s~~~d~klr~kA~~lL~~L~~ 284 (397)
+..|.....++ .+ ++.-+-..++++-.
T Consensus 940 l~~La~~~~~~--~~-i~~tvk~tlseFkr 966 (997)
T 1vsy_5 940 LSNLSSWARTS--GM-TGNAAKNTISEFKK 966 (997)
T ss_dssp HHHHHTTSSSC--SS-HHHHTHHHHHHHHH
T ss_pred HHHHHHHhCCC--Cc-hHHHHHHHHHHHHh
Confidence 33344334443 22 66677777777754
No 159
>3h3g_B Parathyroid hormone-related protein; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli}
Probab=27.01 E-value=63 Score=19.00 Aligned_cols=18 Identities=17% Similarity=0.479 Sum_probs=13.7
Q ss_pred HHHHHHhHHHHHHHHHhcC
Q 015951 102 PSELKKRQMEIKELMEKLK 120 (397)
Q Consensus 102 ~e~l~~r~~~L~ea~~~~~ 120 (397)
-.++ +|+-||.++|+.+.
T Consensus 4 ~Q~~-rRr~wL~~ll~~vh 21 (24)
T 3h3g_B 4 IQDL-RRRFFLHHLIAEIH 21 (26)
T ss_dssp HHHH-HHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHHHHHhh
Confidence 3455 69999999998653
No 160
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=26.93 E-value=87 Score=23.05 Aligned_cols=19 Identities=26% Similarity=0.294 Sum_probs=14.8
Q ss_pred CChHHHHHHHHHHhHHhhh
Q 015951 344 CGLDTALERLRQQLQEVML 362 (397)
Q Consensus 344 ~gL~~~L~~Lr~~~~~l~~ 362 (397)
..|...|.-+|.+|+++..
T Consensus 5 ~DL~~il~eiRaQYE~ia~ 23 (77)
T 3trt_A 5 PDCTAAMRDVRQQYESVAA 23 (77)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHH
Confidence 4577788889999988764
No 161
>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}
Probab=25.66 E-value=1.9e+02 Score=30.51 Aligned_cols=139 Identities=12% Similarity=0.053 Sum_probs=88.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHhcCChHHHHHH--HHcCcHHHHHHhhc--------CCC--HHHHHHHHHHHHHHh
Q 015951 172 SVLVGQLNHPDTDIRKISAWILGKASQNNPLVQKQV--LELGALSKLMKMVK--------SSF--VEEAVKALYTVSSLI 239 (397)
Q Consensus 172 ~~Li~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~v--l~~g~lp~Ll~LL~--------s~~--~~v~~kAl~ALS~Li 239 (397)
+.|+.-|-++.=++|--||-.|..+.......-... .+....-.|+-++. ++. .+||+.|..+|+.+
T Consensus 177 E~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGaL- 255 (800)
T 3oc3_A 177 EQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSRI- 255 (800)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHHH-
T ss_pred HHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHHH-
Confidence 355566677888999999999988775332110000 00133344444332 112 47899999999999
Q ss_pred cCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhccCCChHHH
Q 015951 240 RNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTASADLDLQ 319 (397)
Q Consensus 240 R~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~~~d~dv~ 319 (397)
++-|+. ...+..|+..+..+ .=.+|.-+.-.|.++ .. + .. . =.++++.++..|...|.||+
T Consensus 256 ~hLp~e------~~IL~qLV~~l~~~--~WEVRHGGLLGLKYL-~D-L--L~----~---Ld~Vv~aVL~GL~D~DDDVR 316 (800)
T 3oc3_A 256 YPLIGP------NDIIEQLVGFLDSG--DWQVQFSGLIALGYL-KE-F--VE----D---KDGLCRKLVSLLSSPDEDIK 316 (800)
T ss_dssp TTTSCS------CCHHHHHTTGGGCS--CHHHHHHHHHHHHHT-GG-G--CC----C---HHHHHHHHHHHTTCSSHHHH
T ss_pred HhCChh------HHHHHHHHhhcCCC--CeeehhhhHHHHHHH-HH-H--HH----H---HHHHHHHHHhhcCCcccHHH
Confidence 765553 34455555444443 455777788888887 21 1 11 1 24678888889999999999
Q ss_pred HHHHHHHHHHh
Q 015951 320 EKALAAIKNLL 330 (397)
Q Consensus 320 E~aL~aL~~L~ 330 (397)
..|+.+|.-++
T Consensus 317 AVAAetLiPIA 327 (800)
T 3oc3_A 317 LLSAELLCHFP 327 (800)
T ss_dssp HHHHHHHTTSC
T ss_pred HHHHHHhhhhc
Confidence 99998887776
No 162
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=25.45 E-value=3.5e+02 Score=23.85 Aligned_cols=88 Identities=22% Similarity=0.166 Sum_probs=52.8
Q ss_pred HHHHHHHHhccCCCCchhHHHhcCCHHHHHHhc-C-C-CCHHHHHHHHHHHHHHhcC----ChHHHHHHHHcCcHHHHHH
Q 015951 146 QRALQELLILVEPIDNANDLSKLGGLSVLVGQL-N-H-PDTDIRKISAWILGKASQN----NPLVQKQVLELGALSKLMK 218 (397)
Q Consensus 146 ~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL-~-s-~~~~ir~~Aa~vLg~~aqN----Np~~Q~~vl~~g~lp~Ll~ 218 (397)
...++-..-++++..---+-.-.-.+|+++.|+ . + ....+|..||.+|+.+|.. +|..|..+ +..+.+
T Consensus 64 ~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k~l~~~~LRd~AA~lL~~I~~~~~~~y~~L~~RI-----~~tl~k 138 (196)
T 4atg_A 64 KTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGKSIVDDDVRKMSADIVKYIYDTYSRSYKTLAPRV-----LKTLKG 138 (196)
T ss_dssp HHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHHHTTTSTTHHHHH-----HHHHHH
T ss_pred HHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHhCccCchHHHHH-----HHHHHH
Confidence 334555555555433222222234688898876 2 2 2238999999999999964 34444443 345555
Q ss_pred hhcCC--CHHHHHHHHHHHHHH
Q 015951 219 MVKSS--FVEEAVKALYTVSSL 238 (397)
Q Consensus 219 LL~s~--~~~v~~kAl~ALS~L 238 (397)
.+.++ +....--|+..|+.+
T Consensus 139 ~l~dp~~~l~t~YGAi~GL~~l 160 (196)
T 4atg_A 139 VWMDPNRSEDSQYGALYCLSIL 160 (196)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHH
T ss_pred HHcCCCCChHHHHHHHHHHHHh
Confidence 55443 345677788888877
No 163
>1bwx_A Parathyroid hormone; peptide hormone, solution structure; NMR {Homo sapiens} SCOP: j.15.1.1 PDB: 1zwf_A 1zwg_A* 2l1x_A
Probab=25.15 E-value=36 Score=22.42 Aligned_cols=13 Identities=8% Similarity=0.246 Sum_probs=11.6
Q ss_pred HhHHHHHHHHHhc
Q 015951 107 KRQMEIKELMEKL 119 (397)
Q Consensus 107 ~r~~~L~ea~~~~ 119 (397)
+|++||++.|+.+
T Consensus 19 ~R~~WLq~~L~~v 31 (39)
T 1bwx_A 19 ERVEWLRKKLQDV 31 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 6999999999875
No 164
>1et1_A Parathyroid hormone; helical dimer, hormone/growth factor complex; 0.90A {Homo sapiens} SCOP: j.15.1.1 PDB: 1hpy_A 1zwa_A 1hph_A 1zwb_A 1zwd_A 1zwc_A 1zwe_A 1hth_A* 1fvy_A 3c4m_C*
Probab=23.90 E-value=40 Score=21.57 Aligned_cols=13 Identities=8% Similarity=0.246 Sum_probs=11.2
Q ss_pred HhHHHHHHHHHhc
Q 015951 107 KRQMEIKELMEKL 119 (397)
Q Consensus 107 ~r~~~L~ea~~~~ 119 (397)
+|+.||++.|+.+
T Consensus 19 ~R~~WLq~~l~~v 31 (34)
T 1et1_A 19 ERVEWLRKKLQDV 31 (34)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc
Confidence 6999999999754
No 165
>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A
Probab=23.67 E-value=1.1e+02 Score=25.67 Aligned_cols=92 Identities=13% Similarity=0.116 Sum_probs=54.5
Q ss_pred HHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCC-cHHHHHH
Q 015951 231 ALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRF-FLKSVVD 309 (397)
Q Consensus 231 Al~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g-~v~~Lv~ 309 (397)
.+.-|+.++++++... | .--.+.|..-|.++ +..++.||+.+|.+|+.+ +++.+...+.++- .|+.+.+
T Consensus 31 lm~EIA~~T~~s~~~~--~--~eim~~L~kRL~~k--~~~vk~KaL~lL~yL~~~----Gs~~f~~~~r~~~~~Ik~l~~ 100 (140)
T 1vdy_A 31 KLEEICDLLRSSHVSI--V--KEFSEFILKRLDNK--SPIVKQKALRLIKYAVGK----SGSEFRREMQRNSVAVRNLFH 100 (140)
T ss_dssp HHHHHHHHHHHSCHHH--H--HHHHHHHHHHHTSS--SHHHHHHHHHHHHHHTTT----SCHHHHHHHHHTTHHHHTTTT
T ss_pred HHHHHHHHHHhcchhH--H--HHHHHHHHHHhcCC--CcceeehHHHHHHHHHHh----CCHHHHHHHHHhHHHHHHHHh
Confidence 3445666766653211 1 12345667777776 456899999999999973 4566666665543 2333322
Q ss_pred hccCCC--------hHHHHHHHHHHHHHhcC
Q 015951 310 LTASAD--------LDLQEKALAAIKNLLQL 332 (397)
Q Consensus 310 lL~~~d--------~dv~E~aL~aL~~L~~~ 332 (397)
.=..+| ..||++|-.++..|...
T Consensus 101 F~g~~dp~~G~d~g~~VR~~AkEl~~ll~d~ 131 (140)
T 1vdy_A 101 YKGHPDPLKGDALNKAVRETAHETISAIFSE 131 (140)
T ss_dssp CCCCCCTTTSSCHHHHHHHHHHHHHHHHTCC
T ss_pred cCCCCCcccccchhHHHHHHHHHHHHHHhCc
Confidence 211122 57888888777766654
No 166
>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}
Probab=23.51 E-value=4.3e+02 Score=24.16 Aligned_cols=41 Identities=2% Similarity=-0.083 Sum_probs=30.2
Q ss_pred cHHHHHHhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhc
Q 015951 212 ALSKLMKMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVE 252 (397)
Q Consensus 212 ~lp~Ll~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~ 252 (397)
++|.|-.+..+++.-||+...++|.-+.+.+|.....|++.
T Consensus 179 ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~Pd~V~~~~~~ 219 (240)
T 3l9t_A 179 AIRRIADLKEDVSEYVRKSVGNALRDISKKFPDLVKIELKN 219 (240)
T ss_dssp HHHHHHTTTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHhhhCHHHHHHHHHH
Confidence 35555555555566788888889999999998888888753
No 167
>3l3f_X Protein DOA1, DOA1/UFD3; armadillo-like repeat structure, nucleus, UBL conjugation PA protein binding; 1.90A {Saccharomyces cerevisiae}
Probab=22.45 E-value=5.3e+02 Score=24.91 Aligned_cols=165 Identities=10% Similarity=0.032 Sum_probs=0.0
Q ss_pred HHHHHhccCCCCchhHHHhcCCHHHHH----HhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH-HhhcCC
Q 015951 149 LQELLILVEPIDNANDLSKLGGLSVLV----GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLM-KMVKSS 223 (397)
Q Consensus 149 L~~L~~Lve~iDnA~~~~~lGGl~~Li----~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll-~LL~s~ 223 (397)
+..|..+++..+ ..++.++ ..+.+=.. |..+..++.-++-+.+.. +.+..++ ..+.+.
T Consensus 149 l~~l~~~l~~~~--------~~~~~l~~~~~~i~~~Wp~--~FP~LDLLRl~v~~~~~~-------~~l~~li~~~~~~~ 211 (362)
T 3l3f_X 149 LAQIGGALHDID--------ESWELLLSFANTIRSNWEI--KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNK 211 (362)
T ss_dssp HHHHHHHHTCTT--------TCHHHHHHHHHHHHHHCSC--CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCS
T ss_pred HHHHHHHHhccc--------ccHHHHHHHHHHHHhhCCc--cchHHHHHHHHhcCCChH-------HHHHHHHHHhcCCC
Q ss_pred CHHHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCC------ccHHHHHHHHHHHHHHhhchhccCCCCcchh
Q 015951 224 FVEEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSS------FEIRLHRKAVSLVGDLAKCQLENMHKVEPPL 297 (397)
Q Consensus 224 ~~~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~------~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~ 297 (397)
+...+--++..++|+..+.......+....-...+...+.+.- .+..++.-+++++.|++.........
T Consensus 212 ~~~n~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~~~~~~~~~nkNl~IA~ATL~lNlAv~~~~~~~~----- 286 (362)
T 3l3f_X 212 NITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTEFSQASAKQSQNLAIAVSTLIFNYSALVTKGNSD----- 286 (362)
T ss_dssp SHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHTTHHHHSCSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHTCSC-----
T ss_pred ChhHHHHHHHHHHHhccCcchHHHHHhcchhHHHHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHHhcccch-----
Q ss_pred HHhCCcHHHHHHhcc---------CCChHHHHHHHHHHHHHhcCChHHHH
Q 015951 298 FRDRFFLKSVVDLTA---------SADLDLQEKALAAIKNLLQLRTTEAL 338 (397)
Q Consensus 298 l~~~g~v~~Lv~lL~---------~~d~dv~E~aL~aL~~L~~~~~~~r~ 338 (397)
..++..+++.+. ..|.+....++.||++|+..++..++
T Consensus 287 ---~el~~~l~~~l~~~~g~~E~~~~d~EA~yRlLVALGtL~~~~~~~~~ 333 (362)
T 3l3f_X 287 ---LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLATVEPTLRQ 333 (362)
T ss_dssp ---TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred ---HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHhcCHHHHH
No 168
>3vld_A DNA mismatch repair protein HSM3; heat repeat, RPT1, chaperone; HET: DNA; 2.05A {Saccharomyces cerevisiae} PDB: 3vle_A* 3vlf_A* 4a3v_A* 4a3t_A*
Probab=22.37 E-value=3.8e+02 Score=27.27 Aligned_cols=146 Identities=10% Similarity=0.090 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhCC----CCCHHHHHHHHHHHHhccCCCCchhHHHhcCCHHHHHHhcCCCCHHHHHHHHHHHHHHhcC
Q 015951 124 DAQLIQIAIDDLNNS----TLSLEDSQRALQELLILVEPIDNANDLSKLGGLSVLVGQLNHPDTDIRKISAWILGKASQN 199 (397)
Q Consensus 124 d~~lmk~~i~~L~~~----~~s~e~k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li~lL~s~~~~ir~~Aa~vLg~~aqN 199 (397)
...++...-.+|.++ ..+++.....++.+-..+. =.++...=.++-++..|.++++.+...||.+|.
T Consensus 71 ~~~ll~~Ik~iL~~~~~~~~lD~~~Li~Ll~~il~~~~----Fd~VLevysve~i~~aL~S~~~~l~~~~ckVI~----- 141 (500)
T 3vld_A 71 VKPLLATIKRFLTSNVSYDSLNYDYLLDVVDKLVPMAD----FDDVLEVYSAEDLVKALRSEIDPLKVAACRVIE----- 141 (500)
T ss_dssp CHHHHHHHHHHHHCSSCCTTCCHHHHHHHHHHHHHHSC----HHHHHHHSCHHHHHHHHTSSCHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHHHcCCccccccCHHHHHHHHHHHHhcCC----HHHHHHhCCHHHHHHHHhcCChHHHHHHHHHhc-----
Confidence 345555555666333 3466665555555544332 234444557888899999999999999999998
Q ss_pred ChHHHHHHHHcCcHHHHHHhhcCCCH--H-HHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHHHHHH
Q 015951 200 NPLVQKQVLELGALSKLMKMVKSSFV--E-EAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLHRKAV 276 (397)
Q Consensus 200 Np~~Q~~vl~~g~lp~Ll~LL~s~~~--~-v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr~kA~ 276 (397)
.+.-+..|...+.+..|++++-.++. . +..+.=.+++.+. ...-.+..+. .+-++.|..+=++. +..+..+-.
T Consensus 142 ~s~pk~lfa~t~iidiLL~lyFd~~t~i~~vvn~IE~~~~~Ls-sdeLirrril-~nnl~lL~~vK~~~--~~i~~sRLL 217 (500)
T 3vld_A 142 NSQPKGLFATSNIIDILLDILFDEKVENDKLITAIEKALERLS-TDELIRRRLF-DNNLPYLVSVKGRM--ETVSFVRLI 217 (500)
T ss_dssp TCSSGGGGTTSSHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHT-TSHHHHHHHH-TTTHHHHHHHHHHC--CHHHHHHHH
T ss_pred ccCchhHhccChHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcC-chHHHHHHHH-HHhHHHHHHHhcCC--CceeHHHHH
Confidence 23346777788899999998876542 2 4322223333332 2222233333 24445555543332 333444444
Q ss_pred HHHHHH
Q 015951 277 SLVGDL 282 (397)
Q Consensus 277 ~lL~~L 282 (397)
-++.-+
T Consensus 218 dll~il 223 (500)
T 3vld_A 218 DFLTIE 223 (500)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 169
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=22.09 E-value=3.8e+02 Score=26.61 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=72.2
Q ss_pred HHHHHHHHHhccCCCCchhHHHhcCCHHHHH-HhcCCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCcHHHHHHhhcCC
Q 015951 145 SQRALQELLILVEPIDNANDLSKLGGLSVLV-GQLNHPDTDIRKISAWILGKASQNNPLVQKQVLELGALSKLMKMVKSS 223 (397)
Q Consensus 145 k~~AL~~L~~Lve~iDnA~~~~~lGGl~~Li-~lL~s~~~~ir~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll~LL~s~ 223 (397)
+..++|-|+.++-....+..+.. ++ ..+.+..+..+..+.++++++.++-+.-+..+........+++.+.+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~~~l~~------li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll~~~~~~~~i~~~i~~~ 316 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYSSDIKD------YIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLLESNQVYKSIFETIDTE 316 (425)
T ss_dssp CHHHHHHHHHHGGGCSCGGGGHH------HHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHHTSHHHHHHHHHHSCCC
T ss_pred ccHHHHHHHHHHcCCchHHHHHH------HHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHhhCchhHHHHHHHHHHH
Confidence 66789999988877776654332 33 334566899999999999999986542344443322356666665422
Q ss_pred ----CHHHHHHHHHHHHHHhcCChhcHHH-HHhcCcHHHHHHhhcC----C---CccHHHHHHHHHHHHHHhh
Q 015951 224 ----FVEEAVKALYTVSSLIRNNLAGQEM-FYVEAGDLMLQDILGN----S---SFEIRLHRKAVSLVGDLAK 284 (397)
Q Consensus 224 ----~~~v~~kAl~ALS~LiR~~~~~~~~-f~~~gGi~~L~~lL~s----~---~~d~klr~kA~~lL~~L~~ 284 (397)
...--....-|++.++-|..-.... -.+......+..++.. . ..+.....+++-++.+|+.
T Consensus 317 l~~~~~~~nkNl~IA~ATLllNlAv~~~~~~~~~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGtLv~ 389 (425)
T 3pst_A 317 FSQASAKQSQNLAIAVSTLIFNYSALVTKGNSDLELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGNLAT 389 (425)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHSCSCTTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHHHHh
Confidence 1211222223333333221110000 0001223345555541 0 1244577888888888874
No 170
>3pst_A Protein DOA1; protein degradation, CDC48, ubiquitin, nuclear protein; 2.00A {Saccharomyces cerevisiae} PDB: 3psp_A
Probab=20.96 E-value=6.2e+02 Score=25.08 Aligned_cols=134 Identities=10% Similarity=0.047 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHcCcHHHHH-HhhcCCCHHHHHHHHHHHHHHhcCChhcHHHHHhcC-cHHHHHHhhc
Q 015951 186 RKISAWILGKASQNNPLVQKQVLELGALSKLM-KMVKSSFVEEAVKALYTVSSLIRNNLAGQEMFYVEA-GDLMLQDILG 263 (397)
Q Consensus 186 r~~Aa~vLg~~aqNNp~~Q~~vl~~g~lp~Ll-~LL~s~~~~v~~kAl~ALS~LiR~~~~~~~~f~~~g-Gi~~L~~lL~ 263 (397)
|..+..++.-++-+.+.. +.+..++ ..+.+.+...+--++..++|+..+.......+ ... -...+...+.
T Consensus 243 ~FPaLDLLRl~v~~p~~~-------~~l~~li~~~l~~~~~an~MltlR~laNlF~~~~~g~~ll-~~~~~~~~i~~~i~ 314 (425)
T 3pst_A 243 KTPAYDIVRLIVKKLPYS-------SDIKDYIEEGLGNKNITLTMLTVRILVNCFNNENWGVKLL-ESNQVYKSIFETID 314 (425)
T ss_dssp CHHHHHHHHHHGGGCSCG-------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTTCTTTHHHHH-TSHHHHHHHHHHSC
T ss_pred ccHHHHHHHHHHcCCchH-------HHHHHHHHHhcCCCChhHHHHHHHHHHHhcCCcchHHHHh-hCchhHHHHHHHHH
Confidence 777888888887665432 1233333 23334456778899999999976543234333 222 1333444332
Q ss_pred C----C--CccHHHHHHHHHHHHHHhhchhccCCCCcchhHHhCCcHHHHHHhcc---------CCChHHHHHHHHHHHH
Q 015951 264 N----S--SFEIRLHRKAVSLVGDLAKCQLENMHKVEPPLFRDRFFLKSVVDLTA---------SADLDLQEKALAAIKN 328 (397)
Q Consensus 264 s----~--~~d~klr~kA~~lL~~L~~~~l~~~~~~~~~~l~~~g~v~~Lv~lL~---------~~d~dv~E~aL~aL~~ 328 (397)
+ . ..+..++.-+++++.|++..... .... ..++..+++.+. ..|.+....+|.||++
T Consensus 315 ~~l~~~~~~~nkNl~IA~ATLllNlAv~~~~--~~~~------~el~~~l~e~l~~~~g~~E~~~~d~EA~yRlLVALGt 386 (425)
T 3pst_A 315 TEFSQASAKQSQNLAIAVSTLIFNYSALVTK--GNSD------LELLPIVADAINTKYGPLEEYQECEEAAYRLTVAYGN 386 (425)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHHHH--SCSC------TTHHHHHHHHHHHTTTTSHHHHTSHHHHHHHHHHHHH
T ss_pred HHhhhcccCCCchHHHHHHHHHHHHHHHHhc--ccch------HHHHHHHHHHHHhhccccccccCCHHHHHHHHHHHHH
Confidence 1 1 11345888999999999863210 0100 223445555555 2488999999999999
Q ss_pred HhcCChH
Q 015951 329 LLQLRTT 335 (397)
Q Consensus 329 L~~~~~~ 335 (397)
|+...+.
T Consensus 387 Lv~~~~~ 393 (425)
T 3pst_A 387 LATVEPT 393 (425)
T ss_dssp HHHHCHH
T ss_pred HHhcCHH
Confidence 9976553
No 171
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=20.93 E-value=76 Score=22.25 Aligned_cols=38 Identities=11% Similarity=0.345 Sum_probs=24.4
Q ss_pred chhhHHHHHHHHHHHHHHHH-HHHhhhhhhhccCCccccccccccccc
Q 015951 2 NTRRNRIASRALWLLVLLMI-TMAIGRAERVNNSSSAGLFWSTAKEDE 48 (397)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~t~~~~~ 48 (397)
+.||-+++..+.+|.+-+.| |.+-. +.+.||=.|...+
T Consensus 9 DPrr~Lva~~~fl~vlAl~IHfilLS---------t~~fNWl~~~~a~ 47 (52)
T 1xrd_A 9 DPRQALVGLATFLFVLALLIHFILLS---------TERFNWLEGASTK 47 (52)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHCSSSS
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhc---------cCCcccccCcccc
Confidence 67888888777666665555 43332 4678887765443
No 172
>3nfq_A Transcription factor IWS1; SPN1, RNA polymerase II; 1.85A {Saccharomyces cerevisiae} PDB: 3o8z_A 3oak_A
Probab=20.43 E-value=3.9e+02 Score=23.10 Aligned_cols=79 Identities=13% Similarity=0.068 Sum_probs=0.0
Q ss_pred CChHHHHHHHHcCcHHHHHHhhcCCCH------HHHHHHHHHHHHHhcCChhcHHHHHhcCcHHHHHHhhcCCCccHHHH
Q 015951 199 NNPLVQKQVLELGALSKLMKMVKSSFV------EEAVKALYTVSSLIRNNLAGQEMFYVEAGDLMLQDILGNSSFEIRLH 272 (397)
Q Consensus 199 NNp~~Q~~vl~~g~lp~Ll~LL~s~~~------~v~~kAl~ALS~LiR~~~~~~~~f~~~gGi~~L~~lL~s~~~d~klr 272 (397)
+....|..|++.|++..+-..|.--++ .+|...+-+|..+ |-..+.+...|--.+++-+-+++......|
T Consensus 64 ~k~~L~~~~ld~giL~~l~~WLePLpDgSLP~~~Ir~~lL~~L~~l----PI~~e~Lk~SglGkvV~~l~k~~~et~~nk 139 (170)
T 3nfq_A 64 SKANLADTILDNNLLQSVRIWLEPLPDGSLPSFEIQKSLFAALNDL----PVKTEHLKESGLGRVVIFYTKSKRVEAQLA 139 (170)
T ss_dssp TCGGGHHHHHHTTHHHHHHHHHSCCTTSCCCCHHHHHHHHHHHHTS----CCCHHHHHHHSHHHHHHHHHHCTTSCHHHH
T ss_pred hHHHHHHHHHHcchHHHHHHHhCcCCCCCCCcHHHHHHHHHHHHHC----CCCHHHHhhCCCCceeeehhcCCcccHHHH
Q ss_pred HHHHHHHHH
Q 015951 273 RKAVSLVGD 281 (397)
Q Consensus 273 ~kA~~lL~~ 281 (397)
+.|-.++..
T Consensus 140 rla~~Li~~ 148 (170)
T 3nfq_A 140 RLAEKLIAE 148 (170)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Done!