BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015952
(397 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P27473|IFI44_PANTR Interferon-induced protein 44 OS=Pan troglodytes GN=IFI44 PE=1 SV=1
Length = 444
Score = 38.5 bits (88), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 35/132 (26%)
Query: 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE----YTIPRGS 161
+LL+GP G+GKSS N + VF+ VT+ + VG T + E Y+I G
Sbjct: 189 ILLLGPIGAGKSSFFNSVRSVFQ--------GHVTHQALVGTNTTGISEKYRTYSIRDGK 240
Query: 162 NS----FSLYDTRSLSDDAS----DNINMI---------KLWIMEGVR--HGELVIRRSD 202
+ F L D+ LS+ D+I+ I + ME ++ H + + D
Sbjct: 241 DGKYLPFILCDSLGLSEKEGGLCMDDISYILNGNIRDRYQFNPMESIKLNHHDYI----D 296
Query: 203 SSSLRNRMRCKA 214
S SL++R+ C A
Sbjct: 297 SPSLKDRIHCVA 308
>sp|Q8TCB0|IFI44_HUMAN Interferon-induced protein 44 OS=Homo sapiens GN=IFI44 PE=2 SV=2
Length = 444
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 105/250 (42%), Gaps = 41/250 (16%)
Query: 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQE----YTIPRGS 161
+LL+GP G+GKSS N + VF+ VT+ + VG T + E Y+I G
Sbjct: 189 ILLLGPIGAGKSSFFNSVRSVFQ--------GHVTHQALVGTNTTGISEKYRTYSIRDGK 240
Query: 162 NS----FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI 217
+ F L D+ LS+ +I+ G IR + ++ H
Sbjct: 241 DGKYLPFILCDSLGLSEKEGGLCRDDIFYILNG------NIRDRYQFNPMESIKLNHHDY 294
Query: 218 GCEPSVIRKVNFVIFVVDGLAVLK-SMEGDSDVEKQYNQIV-ATTFNCPYLSFRDDKPVV 275
PS+ +++ V FV D ++ S + +++ ++V A + L+ D
Sbjct: 295 IDSPSLKDRIHCVAFVFDASSIQYFSSQMIVKIKRIRRELVNAGVVHVALLTHVDSMD-- 352
Query: 276 VVTHGDLLSLTDRARIRTYLGEL---LGIPPAKQIFDIPESS--------DPENELIIVD 324
++T GDL+ + +R+ L E+ LG + DI S DP +++I+
Sbjct: 353 LITKGDLIEIERCEPVRSKLEEVQRKLGFALS----DISVVSNYSSEWELDPVKDVLILS 408
Query: 325 MLRYCLEHAD 334
LR L AD
Sbjct: 409 ALRRMLWAAD 418
>sp|Q9FNP1|PEX1_ARATH Peroxisome biogenesis protein 1 OS=Arabidopsis thaliana GN=PEX1
PE=2 SV=2
Length = 1130
Score = 37.0 bits (84), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 91 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK 131
GM S + +P +L+ GP GSGK+ L +K FE K
Sbjct: 581 AGMWFSKFKIPSPGHILIYGPPGSGKTILARAAAKYFEEQK 621
>sp|Q8R9I2|PSTB2_THETN Phosphate import ATP-binding protein PstB 2 OS=Thermoanaerobacter
tengcongensis (strain DSM 15242 / JCM 11007 / NBRC
100824 / MB4) GN=pstB2 PE=3 SV=1
Length = 249
Score = 36.6 bits (83), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 54/249 (21%), Positives = 98/249 (39%), Gaps = 56/249 (22%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLV---NRISKVFENDKFA-----------SERAQVTYN 142
+ DV + L LIGP G GKS+ + NR++ + E K + E +
Sbjct: 23 NLDVEPNSVLALIGPSGCGKSTFIRTLNRMNDLIEGVKISGTVLLDGKDIYKEVDVIELR 82
Query: 143 SSVG-----DGTYFLQEY-TIPRGSNSFSLYDTRSLSDDASDNINMIKLW--IMEGVRHG 194
VG + + Y + G + D R+L++ ++ LW + + + H
Sbjct: 83 KKVGMVFQKPNPFPMTVYDNVAYGPRIHGIRDKRTLNEIVEKSLKAAALWDEVKDRLHHS 142
Query: 195 ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 254
L S S + R+ C A + EP VI ++ +D ++ +K E +++K+Y
Sbjct: 143 AL----SLSGGQQQRL-CIARTLAVEPEVIL-MDEPTSALDPISTMKIEELIEELKKKYT 196
Query: 255 QIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYL-----GELLGIPPAKQIFD 309
+++VTH ++ R+ Y GEL+ P Q+F
Sbjct: 197 -------------------IIIVTH----NMQQAGRVSDYTAFFLNGELVEWGPTDQVFY 233
Query: 310 IPESSDPEN 318
P+ E+
Sbjct: 234 NPKDKRTED 242
>sp|B8E247|DXS_DICTD 1-deoxy-D-xylulose-5-phosphate synthase OS=Dictyoglomus turgidum
(strain Z-1310 / DSM 6724) GN=dxs PE=3 SV=1
Length = 618
Score = 36.6 bits (83), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 11/136 (8%)
Query: 15 GEEIISPVDDFDIPLLSGDDEGSRD--SWDSLVDQRRRDAVFREVLQSYDQLRTRIGSLT 72
G + P D DIPLL +G +D S L+ + + + ++ IGS +
Sbjct: 242 GFKYFGPFDGHDIPLLISVFKGIKDNLSCPVLIHVTTKKGIGHKDAEATPSKFHSIGSKS 301
Query: 73 DAKNKILSYTP--GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFEND 130
+ + K+ +YT G + +GGM P+ ++ P+G+G S R + F +
Sbjct: 302 EKEKKVPTYTEVFGKALVELGGM------YPEVVAITAAMPEGTGLSYFAQRFPERFFDV 355
Query: 131 KFASERAQVTYNSSVG 146
A + A VT+ + +
Sbjct: 356 GIAEQHA-VTFAAGLA 370
>sp|A8FD80|CLPY_BACP2 ATP-dependent protease ATPase subunit ClpY OS=Bacillus pumilus
(strain SAFR-032) GN=clpY PE=3 SV=1
Length = 466
Score = 35.8 bits (81), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 55 REVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 114
RE+++ DQ IG L DAK + + ++ L D VPK ++L+IGP G
Sbjct: 9 REIVEKLDQYI--IGQL-DAKKAVAVALRNRYRRSLLHDKLKDEVVPK--NILMIGPTGV 63
Query: 115 GKSSLVNRISKV 126
GK+ + RI+K+
Sbjct: 64 GKTEIARRIAKI 75
>sp|Q8BV66|IFI44_MOUSE Interferon-induced protein 44 OS=Mus musculus GN=Ifi44 PE=2 SV=1
Length = 422
Score = 35.8 bits (81), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 94 TLSDY----DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128
L DY D+ + T +LL+GP G+GKSS VN + VF+
Sbjct: 168 ALRDYKPYGDLVQQTRVLLLGPIGAGKSSFVNSVKSVFK 206
>sp|Q5A4Q1|KAD12_CANAL Adenylate kinase 1-2 OS=Candida albicans (strain SC5314 / ATCC
MYA-2876) GN=ADK1-2 PE=3 SV=1
Length = 249
Score = 35.8 bits (81), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Query: 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSVG 146
DVPK+ ++LIGP GSGK + + + F A+ RAQV +++G
Sbjct: 29 DVPKSVRMVLIGPPGSGKGTQAPNLKEKFCACHLATGDMLRAQVAAKTALG 79
>sp|Q53G44|IF44L_HUMAN Interferon-induced protein 44-like OS=Homo sapiens GN=IFI44L PE=2
SV=3
Length = 452
Score = 35.4 bits (80), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 62/257 (24%), Positives = 109/257 (42%), Gaps = 40/257 (15%)
Query: 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIP 158
D+ +LL+GP GSGKSS N + +F Q S + T + Y++
Sbjct: 193 DLVSEIRILLVGPVGSGKSSFFNSVKSIFH----GHVTGQAVVGSDITSITERYRIYSVK 248
Query: 159 RGSNS----FSLYDTRSLSDDASDNINMIKLWIMEGVRH---GELVIRRSDSSSLRNRMR 211
G N F L DT L D ++ + M+ + H G + R +S R +
Sbjct: 249 DGKNGKSLPFMLCDTMGL--DGAEGAGL----CMDDIPHILKGCMPDRYQFNS--RKPIT 300
Query: 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG-DSDVEKQYNQIVATTFNC-----PY 265
+ PS+ +++ V +V+D + S++ S + + Q+ NC
Sbjct: 301 PEHSTFITSPSLKDRIHCVAYVLD----INSIDNLYSKMLAKVKQVHKEVLNCGIAYVAL 356
Query: 266 LSFRDDKPVVVVTHGDLL----SLTDRARIRTYLGELLGIPPAKQIFDIPESS----DPE 317
L+ DD V+ + L S+T ++R+ + ++LGIP + + +S DP
Sbjct: 357 LTKVDDCSEVL--QDNFLNMSRSMTSQSRVMN-VHKMLGIPISNILMVGNYASDLELDPM 413
Query: 318 NELIIVDMLRYCLEHAD 334
+++I+ LR L AD
Sbjct: 414 KDILILSALRQMLRAAD 430
>sp|Q2SS06|PSTB_MYCCT Phosphate import ATP-binding protein PstB OS=Mycoplasma capricolum
subsp. capricolum (strain California kid / ATCC 27343 /
NCTC 10154) GN=pstB PE=3 SV=1
Length = 269
Score = 35.0 bits (79), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 63/240 (26%), Positives = 96/240 (40%), Gaps = 59/240 (24%)
Query: 108 LIGPKGSGKSSL---VNRIS------------KVFENDKFASERAQVTYNSSVGDGTYFL 152
IGP G GK++L +NR++ K+F+ D FAS+ + V G F
Sbjct: 53 FIGPSGCGKTTLLKSINRLNDLIDGVKMSGAIKIFDKDIFASDIDITKLRTEV--GMVFQ 110
Query: 153 QEYTIPRGSNSFSLYDTRSL--SDDAS-DNI---NMIKLWIMEGVRHGELVIRRSDSSSL 206
+ P +Y RSL D A D I ++IK + + V+ I S + L
Sbjct: 111 KPNPFPISIYDNVVYGLRSLGIKDKAILDQICEESLIKAALWDEVKD----ILNSPALGL 166
Query: 207 ---RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNC 263
+ + C A I +P ++ ++ +D +A LK E D++K Y
Sbjct: 167 SGGQQQRLCIARAIAMKPKILL-MDEPTSALDPIATLKVEELVLDLKKDYT--------- 216
Query: 264 PYLSFRDDKPVVVVTHGDLLSLTDRARIRTYL-----GELLGIPPAKQIFDIPESSDPEN 318
+V+VTH SL RI Y GEL+ K+IF P+ EN
Sbjct: 217 ----------IVMVTH----SLQQATRISDYTAYFLKGELIEFNKTKKIFTNPKDRRTEN 262
>sp|P35825|SLAP_GEOSE S-layer protein OS=Geobacillus stearothermophilus GN=sbsA PE=4 SV=1
Length = 1228
Score = 35.0 bits (79), Expect = 0.94, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 17/137 (12%)
Query: 11 FTPEGEEIISPVDDFDIPLLSGDDEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTRIGS 70
FT EG+++ +P + GD D+ +L + DA + +Q ++L+T GS
Sbjct: 744 FTTEGQDVTAPTV---TKVFKGDSLKDADAVTTLTNV---DAGQKFTIQFSEELKTSSGS 797
Query: 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGK-SSLVNRISKVFEN 129
L K + T W++ G T+S PKT + +GK ++ V ++ + N
Sbjct: 798 LVGGKVTVEKLTNNGWVDAGTGTTVS--VAPKTDA--------NGKVTAAVVTLTGLDNN 847
Query: 130 DKFASERAQVTYNSSVG 146
DK A R V +S+ G
Sbjct: 848 DKDAKLRLVVDKSSTDG 864
>sp|A5ULP3|THIM_METS3 Hydroxyethylthiazole kinase OS=Methanobrevibacter smithii (strain
PS / ATCC 35061 / DSM 861) GN=thiM PE=3 SV=1
Length = 287
Score = 35.0 bits (79), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 15/106 (14%)
Query: 56 EVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 115
EV+ D L IG L+ E V M +S K + +++ P G G
Sbjct: 59 EVVSIADALVINIGKLSH--------------EQVEAMKISSAQANKINTPVILDPVGVG 104
Query: 116 KSSLVNRIS-KVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRG 160
S L N+++ ++ EN K A+ R +T ++ T + E +G
Sbjct: 105 ISQLRNKVTLEIIENYKLAAIRGNITEIKTIAKLTGIISESNTAKG 150
>sp|Q16BC5|PHNC1_ROSDO Phosphonates import ATP-binding protein PhnC 1 OS=Roseobacter
denitrificans (strain ATCC 33942 / OCh 114) GN=phnC1
PE=3 SV=1
Length = 263
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 23/32 (71%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128
D ++P+ L LIGP G+GKS+L+ ++++ E
Sbjct: 22 DLEIPQGQVLALIGPSGAGKSTLIRCVNRLVE 53
>sp|Q5WET8|PSTB1_BACSK Phosphate import ATP-binding protein PstB 1 OS=Bacillus clausii
(strain KSM-K16) GN=pstB1 PE=3 SV=1
Length = 260
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 9/57 (15%)
Query: 267 SFRDDKPVVVVTHGDLLSLTDRARIRT-----YLGELLGIPPAKQIFDIPESSDPEN 318
S RD +V+VTH ++ ARI Y+GEL+ I P ++IF PE E+
Sbjct: 201 SLRDSYTIVIVTH----NMQQAARISDETAFFYMGELVEIGPTQRIFSNPEHKRTED 253
>sp|Q46Y89|MSBA_CUPPJ Lipid A export ATP-binding/permease protein MsbA OS=Cupriavidus
pinatubonensis (strain JMP134 / LMG 1197) GN=msbA PE=3
SV=1
Length = 590
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128
D VP + L+GP GSGK++LVN + + F+
Sbjct: 368 DIRVPAGEVVALVGPSGSGKTTLVNLVPRFFD 399
>sp|O67356|CLPX_AQUAE ATP-dependent Clp protease ATP-binding subunit ClpX OS=Aquifex
aeolicus (strain VF5) GN=clpX PE=3 SV=1
Length = 412
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 91 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA-SERAQVTYNSSVGD 147
G++L D ++ K+ ++LLIGP GSGK+ L ++K+ N FA ++ +T VG+
Sbjct: 99 AGLSLDDVELEKS-NILLIGPTGSGKTLLARTLAKIL-NVPFAIADATSLTEAGYVGE 154
>sp|Q7NNG3|PSTB2_GLOVI Phosphate import ATP-binding protein PstB 2 OS=Gloeobacter
violaceus (strain PCC 7421) GN=pstB2 PE=3 SV=1
Length = 268
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 56 EVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 115
E LQ+ DQ+ T+ G +N Y ++N+ D+P + +IGP G G
Sbjct: 4 EQLQA-DQVPTKAGIAYKVRNMAFFYGTKKALDNI------SVDLPAKSVTAIIGPSGCG 56
Query: 116 KSSLVNRISKVFEND 130
KS+ + ++++ E +
Sbjct: 57 KSTFIKALNRIAEAE 71
>sp|Q55774|Y182_SYNY3 Uncharacterized ABC transporter ATP-binding protein sll0182
OS=Synechocystis sp. (strain PCC 6803 / Kazusa)
GN=sll0182 PE=3 SV=1
Length = 661
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 4/80 (5%)
Query: 61 YDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLV 120
++ + TRIG+ +N LS P + V ++L+ V LL++GP GSGKSSL+
Sbjct: 442 HNVITTRIGATVALENVTLS-PPNSSRILVRDLSLA---VAPGNHLLIMGPSGSGKSSLL 497
Query: 121 NRISKVFENDKFASERAQVT 140
I+ ++++ + ER ++
Sbjct: 498 RAIAGLWDSGQGTIERPELA 517
>sp|Q2HFD4|MSH3_CHAGB DNA mismatch repair protein MSH3 OS=Chaetomium globosum (strain
ATCC 6205 / CBS 148.51 / DSM 1962 / NBRC 6347 / NRRL
1970) GN=MSH3 PE=3 SV=1
Length = 1156
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 59/143 (41%), Gaps = 21/143 (14%)
Query: 1 MGGEKTTSRFFTPEGEEIISPVDDFDIPLLSGDDEGSRDSWDSLVDQRR--RDAVFR--- 55
+ G K SRF TPE +++ D L + D D S+ + + RDAV
Sbjct: 777 ISGTKKLSRFHTPEVMRLMNERDQHKEALAAACDNAFTDLLKSIASEYQPLRDAVASLAT 836
Query: 56 -EVLQSYDQLRTRIGS-----LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSL--- 106
+ L S Q+ + G L A +S T G + TL D +P TTSL
Sbjct: 837 LDCLLSLAQVASLPGYSKPTFLPTATPPTISITSGR--HPIAEHTLPDGYIPFTTSLASP 894
Query: 107 -----LLIGPKGSGKSSLVNRIS 124
L+ GP GKSS V ++
Sbjct: 895 SPLAQLITGPNMGGKSSYVRAVA 917
>sp|Q82B58|Y5847_STRAW Putative ABC transporter ATP-binding protein SAV_5847
OS=Streptomyces avermitilis (strain ATCC 31267 / DSM
46492 / JCM 5070 / NCIMB 12804 / NRRL 8165 / MA-4680)
GN=SAV_5847 PE=3 SV=1
Length = 561
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140
D+ VP+ +LL+GP G GKS+++ +S + + + R +VT
Sbjct: 23 DFTVPEGELVLLVGPSGVGKSTVLGAVSGLVPHFTGGTLRGRVT 66
>sp|Q0D9V6|STAR1_ORYSJ Protein STAR1 OS=Oryza sativa subsp. japonica GN=STAR1 PE=1 SV=1
Length = 346
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128
D DVP+ + +IGP GSGKS+L+ +++++E
Sbjct: 133 DLDVPRGVVVGVIGPSGSGKSTLLRALNRLWE 164
>sp|O34703|YJOB_BACSU Uncharacterized ATPase YjoB OS=Bacillus subtilis (strain 168)
GN=yjoB PE=1 SV=1
Length = 423
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 98 YDVPKTTSLLLIGPKGSGKSSLVNRIS 124
YD+P +LL GP G+GK++LV I+
Sbjct: 215 YDIPYKRGILLYGPPGNGKTTLVKSIA 241
>sp|Q6MH12|CLPX_BDEBA ATP-dependent Clp protease ATP-binding subunit ClpX OS=Bdellovibrio
bacteriovorus (strain ATCC 15356 / DSM 50701 / NCIB 9529
/ HD100) GN=clpX PE=3 SV=1
Length = 431
Score = 33.9 bits (76), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 91 GGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA-SERAQVTYNSSVGD 147
GG +D ++ K+ ++LLIGP GSGK+ L I+KV N FA ++ +T VG+
Sbjct: 101 GGKKSADVEMQKS-NILLIGPTGSGKTLLAQTIAKVL-NVPFAMADATTLTEAGYVGE 156
>sp|Q9HS13|PSTB1_HALSA Phosphate import ATP-binding protein PstB 1 OS=Halobacterium
salinarum (strain ATCC 700922 / JCM 11081 / NRC-1)
GN=pstB1 PE=3 SV=1
Length = 281
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 48/218 (22%), Positives = 90/218 (41%), Gaps = 32/218 (14%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE--------RAQVTYNSSVGD- 147
D D+P+ +IGP G GKS+ + I+++ ND+ + R Y+++V
Sbjct: 55 DIDIPEQQVTAIIGPSGCGKSTFLRCINRM--NDRIDAARIDGDLTLRGTNVYDAAVDPV 112
Query: 148 ------GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL---VI 198
G F + P+ S+YD + + D + + +R L V
Sbjct: 113 ALRRRVGMVFQEPNPFPK-----SIYDNVAYGLEIQDVEGDHDEIVEQSLRRAALWDEVS 167
Query: 199 RRSDSSSL-----RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY 253
+ DSS + + + C A I +P V+ ++ +D +A + + ++ ++Y
Sbjct: 168 HQLDSSGVALSGGQQQRLCIARAIAPDPEVL-LMDEPASALDPVATSQVEDLIEELAEEY 226
Query: 254 NQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARI 291
+V T N + DK V +T G L+ D +I
Sbjct: 227 T-VVIVTHNMQQAARISDKTAVFLTGGKLVEFGDTDQI 263
>sp|Q5V225|PSTB1_HALMA Phosphate import ATP-binding protein PstB 1 OS=Haloarcula
marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 /
VKM B-1809) GN=pstB1 PE=3 SV=1
Length = 299
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 28/216 (12%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSL---VNRISKVFENDKFASE---RAQVTYNSSVGD--- 147
D +P+ +IGP G GKS+ +NR++ + + + + + Y++ V
Sbjct: 73 DLAIPEKQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGDLHFEGKNVYDADVDPVAL 132
Query: 148 ----GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL---VIRR 200
G F P+ S+YD + D I + ++ L V +
Sbjct: 133 RRRIGMVFQHPNPFPK-----SIYDNVAYGLRIQDQTENIDEKVETALKRAALWDEVKDQ 187
Query: 201 SDSSSL-----RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 255
D S+L + + C A I +P VI ++ +D +A K + ++ +++
Sbjct: 188 LDKSALDLSGGQQQRLCIARAIAVDPDVIL-MDEPASALDPIATSKIEDLIEELAEEFT- 245
Query: 256 IVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARI 291
+V T N + DK V +T G+L+ D +I
Sbjct: 246 VVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 281
>sp|C4ZGF5|CLPX_EUBR3 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Eubacterium
rectale (strain ATCC 33656 / VPI 0990) GN=clpX PE=3 SV=1
Length = 423
Score = 33.5 bits (75), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 63/142 (44%), Gaps = 10/142 (7%)
Query: 73 DAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKF 132
D K+LS + V SD ++ K+ ++L++GP GSGK+ L +++V N F
Sbjct: 83 DQAKKVLSVAVYNHYKRVLAGDTSDVELQKS-NILMLGPTGSGKTLLAQTLARVI-NVPF 140
Query: 133 A-SERAQVTYNSSVGDGTYFL-------QEYTIPRGSNSFSLYDTRSLSDDASDNINMIK 184
A ++ +T VG+ + +Y I R + D S+N+++ +
Sbjct: 141 AIADATTLTEAGYVGEDVENILLKLIQAADYDIERAEHGIIYIDEIDKITKKSENVSITR 200
Query: 185 LWIMEGVRHGELVIRRSDSSSL 206
EGV+ L I +S+
Sbjct: 201 DVSGEGVQQALLKILEGTEASV 222
>sp|Q4QK92|PSTB_HAEI8 Phosphate import ATP-binding protein PstB OS=Haemophilus influenzae
(strain 86-028NP) GN=pstB PE=3 SV=1
Length = 255
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 54/227 (23%), Positives = 90/227 (39%), Gaps = 17/227 (7%)
Query: 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFL---QEYT 156
+ K IGP G GKS+L+ +++FE + +++A N DG L + +
Sbjct: 31 IAKNKVTAFIGPSGCGKSTLLRSFNRMFE--LYPNQKATGEINL---DGENLLTTKMDIS 85
Query: 157 IPRGSNSFSLYDTRSLSDDASDNINM-IKLW-IMEGVRHGELVIRRSDSSSLRNRMRCKA 214
+ R DNI ++L+ + + E V ++L N ++ K
Sbjct: 86 LIRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSKEKMNERVEWALTKAALWNEVKDKL 145
Query: 215 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPV 274
HK G S ++ I G+A+ S+ + + I + D V
Sbjct: 146 HKSGDSLSGGQQQRLCI--ARGIAIKPSVLLLDEPCSALDPISTMKIEELITELKQDYTV 203
Query: 275 VVVTHGDLLSLTDRARIRT---YLGELLGIPPAKQIFDIPESSDPEN 318
V+VTH + R T YLGEL+ +QIFD P+ E+
Sbjct: 204 VIVTHN--MQQATRCSDYTAFMYLGELVEFGQTQQIFDRPKIQRTED 248
>sp|Q28W08|HSLU_JANSC ATP-dependent protease ATPase subunit HslU OS=Jannaschia sp.
(strain CCS1) GN=hslU PE=3 SV=1
Length = 438
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 55 REVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 114
RE++ D+ I +DAK + W G L D PK ++L+IGP G
Sbjct: 7 REIVSELDRF---IIGQSDAKRAVAVALRNRWRRKQLGDDLRDEVYPK--NILMIGPTGV 61
Query: 115 GKSSLVNRISKVFENDKFASERAQVTYNSSVG 146
GK+ + R++K+ + E + T VG
Sbjct: 62 GKTEISRRLAKLAKAPFIKVEATKFTEVGYVG 93
>sp|B6ISY6|CLPX_RHOCS ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Rhodospirillum centenum (strain ATCC 51521 / SW)
GN=clpX PE=3 SV=1
Length = 421
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/122 (24%), Positives = 54/122 (44%), Gaps = 8/122 (6%)
Query: 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT-- 149
G +D ++ K+ ++LLIGP GSGK+ L ++++ + ++ +T VG+
Sbjct: 101 GAKHNDVELAKS-NILLIGPTGSGKTLLAQTLARIIDVPFTMADATTLTEAGYVGEDVEN 159
Query: 150 ---YFLQ--EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSS 204
LQ +Y + R D SDN ++ + EGV+ L I +
Sbjct: 160 IILKLLQAADYNVERAQRGIVYIDEVDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVA 219
Query: 205 SL 206
S+
Sbjct: 220 SV 221
>sp|Q7XL03|CLPD2_ORYSJ Chaperone protein ClpD2, chloroplastic OS=Oryza sativa subsp.
japonica GN=CLPD2 PE=2 SV=2
Length = 937
Score = 33.1 bits (74), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 62/138 (44%), Gaps = 21/138 (15%)
Query: 15 GEEIISPVDDF----DIPLLSGDDEGSRDS--WDSL-VDQRRRDAVFREVLQSYD-QLRT 66
GE+ SP D P L G +E +R + W + V Q D R++L D +LR
Sbjct: 564 GEDKTSPASMLSTSTDKPSLVGSEEIARVTSLWSGIPVQQLTADE--RKLLVGLDDELRK 621
Query: 67 RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126
R+ DA +L+ + VG L+D D P T L+ GP G GK+ L ++
Sbjct: 622 RVIGQDDA---VLAISKAVKRSRVG---LNDPDRPIAT-LIFCGPTGVGKTELTKALAAS 674
Query: 127 FENDKFASERAQVTYNSS 144
+ F SE A V + S
Sbjct: 675 Y----FGSESATVRLDMS 688
>sp|Q58476|Y1076_METJA Uncharacterized ATP-binding protein MJ1076 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ1076 PE=3 SV=1
Length = 337
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 66/162 (40%), Gaps = 31/162 (19%)
Query: 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFS 165
L + GPK SGKS+++ R+ K E NS++ Y L++Y P S
Sbjct: 25 LFVYGPKSSGKSTVMMRVIKELE-------------NSNIVFFYYNLRKYATPTKDEFLS 71
Query: 166 LY----DTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEP 221
++ D + L + N+ + K I E I+ +D + N K G P
Sbjct: 72 IFFEKSDKKYLLNKLEINLKIFKFGIEENFDFNN--IKLNDVFAKINESINTVIKDGKRP 129
Query: 222 SVIRKVNFVIFVVDGLAVLKSM---EGDSDVEKQYNQIVATT 260
+ V+D L LK++ G S + + +N V+ T
Sbjct: 130 ---------VLVIDELQKLKNIYFNSGKSLLNELFNLFVSLT 162
>sp|Q2RNA1|HSLU_RHORT ATP-dependent protease ATPase subunit HslU OS=Rhodospirillum rubrum
(strain ATCC 11170 / NCIB 8255) GN=hslU PE=3 SV=1
Length = 435
Score = 33.1 bits (74), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 5/92 (5%)
Query: 55 REVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 114
RE++ D+ I DAK + W L D +PK ++L+IGP G
Sbjct: 7 REIVSELDR---HIVGQKDAKRAVAIALRNRWRRQQLSEALRDEVLPK--NILMIGPTGV 61
Query: 115 GKSSLVNRISKVFENDKFASERAQVTYNSSVG 146
GK+ + R++K+ + E + T VG
Sbjct: 62 GKTEIARRLAKLAQAPFLKVEATKFTEVGYVG 93
>sp|A4YVM3|CLPX_BRASO ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Bradyrhizobium sp. (strain ORS278) GN=clpX PE=3 SV=1
Length = 424
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT-----Y 150
SD ++ K+ ++LLIGP GSGK+ L ++++ + ++ +T VG+
Sbjct: 105 SDVELAKS-NILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILK 163
Query: 151 FLQ--EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 206
LQ +Y + R D SDN ++ + EGV+ L I +S+
Sbjct: 164 LLQAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV 221
>sp|A5EKA7|CLPX_BRASB ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182)
GN=clpX PE=3 SV=1
Length = 424
Score = 33.1 bits (74), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT-----Y 150
SD ++ K+ ++LLIGP GSGK+ L ++++ + ++ +T VG+
Sbjct: 105 SDVELAKS-NILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILK 163
Query: 151 FLQ--EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 206
LQ +Y + R D SDN ++ + EGV+ L I +S+
Sbjct: 164 LLQAADYNVERAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKIMEGTVASV 221
>sp|Q31TP8|PHNC_SHIBS Phosphonates import ATP-binding protein PhnC OS=Shigella boydii
serotype 4 (strain Sb227) GN=phnC PE=3 SV=1
Length = 262
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA 133
D ++ + + L+GP GSGKS+L+ +S + DK A
Sbjct: 24 DLNIHHSEMVALLGPSGSGKSTLLRHLSGLITGDKSA 60
>sp|Q83P97|PHNC_SHIFL Phosphonates import ATP-binding protein PhnC OS=Shigella flexneri
GN=phnC PE=3 SV=2
Length = 262
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA 133
D ++ + + L+GP GSGKS+L+ +S + DK A
Sbjct: 24 DLNIHHSEMVALLGPSGSGKSTLLRHLSGLITGDKSA 60
>sp|Q0SXV5|PHNC_SHIF8 Phosphonates import ATP-binding protein PhnC OS=Shigella flexneri
serotype 5b (strain 8401) GN=phnC PE=3 SV=1
Length = 262
Score = 33.1 bits (74), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 23/37 (62%)
Query: 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA 133
D ++ + + L+GP GSGKS+L+ +S + DK A
Sbjct: 24 DLNIHHSEMVALLGPSGSGKSTLLRHLSGLITGDKSA 60
>sp|Q3IS07|PSTB1_NATPD Phosphate import ATP-binding protein PstB 1 OS=Natronomonas
pharaonis (strain DSM 2160 / ATCC 35678) GN=pstB1 PE=3
SV=1
Length = 283
Score = 32.7 bits (73), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 51/229 (22%), Positives = 89/229 (38%), Gaps = 32/229 (13%)
Query: 86 WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER--------A 137
W ++ D+P+ LIGP G GKS+ + I+++ ND+ + R
Sbjct: 46 WYNETQALSDITMDIPEQEVTALIGPSGCGKSTFLRCINRM--NDRIDACRIEGELELHG 103
Query: 138 QVTYNSSVGD-------GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEG 190
+ Y+ V G F + P+ S+YD + I + E
Sbjct: 104 KNVYDEDVDPVALRRKVGMVFQKPNPFPK-----SIYDNVAYGLKIQGYDGDIDARVEEA 158
Query: 191 VRHGEL---VIRRSDSSSL-----RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS 242
+R L V + D S L + + C A I +P V+ ++ +D +A K
Sbjct: 159 LRGAALWDEVNDQLDESGLELSGGQQQRLCIARAIAPDPEVVL-MDEPTSALDPVAASKV 217
Query: 243 MEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARI 291
+ ++ + Y +V T N + DK V +T G+L+ D A +
Sbjct: 218 EDLIDELVEDYT-VVIVTHNMQQAARISDKTAVFLTGGELVEFDDTASV 265
>sp|Q5FUR4|CLPX_GLUOX ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Gluconobacter oxydans (strain 621H) GN=clpX PE=3 SV=1
Length = 421
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 8/118 (6%)
Query: 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT-----Y 150
SD ++ K+ ++LLIGP GSGK+ L ++++ + ++ +T VG+
Sbjct: 104 SDIEIAKS-NILLIGPTGSGKTLLAQTLARILDVPFTMADATTLTEAGYVGEDVENIILK 162
Query: 151 FLQ--EYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL 206
LQ +Y + R D SDN ++ + EGV+ L + +S+
Sbjct: 163 LLQSADYNVDRAQRGIVYIDEIDKISRKSDNPSITRDVSGEGVQQALLKLMEGTVASV 220
>sp|Q6LPK6|MSBA_PHOPR Lipid A export ATP-binding/permease protein MsbA OS=Photobacterium
profundum GN=msbA PE=3 SV=1
Length = 585
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 23/33 (69%)
Query: 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFEND 130
+D+P +L L+G GSGKS++ N +++ ++ D
Sbjct: 367 FDLPAGKTLALVGRSGSGKSTIANLLTRFYDID 399
>sp|A9KDS7|CLPX_COXBN ATP-dependent Clp protease ATP-binding subunit ClpX OS=Coxiella
burnetii (strain Dugway 5J108-111) GN=clpX PE=3 SV=1
Length = 422
Score = 32.7 bits (73), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 135
K+LS + +G T D +++LLIGP GSGK+ L ++K+ + ++
Sbjct: 81 KKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIAD 140
Query: 136 RAQVTYNSSVGD 147
+T VG+
Sbjct: 141 ATTLTEAGYVGE 152
>sp|Q8EUJ1|PSTB_MYCPE Phosphate import ATP-binding protein PstB OS=Mycoplasma penetrans
(strain HF-2) GN=pstB PE=3 SV=1
Length = 288
Score = 32.7 bits (73), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 83/199 (41%), Gaps = 31/199 (15%)
Query: 86 WIENVGGMTLSD--YDVPKTTSLLLIGPKGSGKSS---LVNRISKVFENDKFASE---RA 137
+ EN L D D+ K IGP G GKS+ L+NR++++ N F +
Sbjct: 48 YYENGKKQALYDVNLDIKKNKVTSFIGPSGCGKSTFLRLLNRMNELLPNTTFDGDIYFEK 107
Query: 138 QVTYNS--SVGD-----GTYFLQEYTIPRGSNSFSLYD--TRSLSDDASDNINMIKLWIM 188
Q Y+ SV D G F + P S+YD +L + N ++ I
Sbjct: 108 QNIYSKKFSVLDLRIKVGMVFQKATPFP-----MSIYDNVAFALKNQGIKNKKILDETIE 162
Query: 189 EGVRHGELVIRRSDS--------SSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVL 240
+ +R L D+ S + + C A I C+PSV+ ++ +D +A
Sbjct: 163 KSLRSAALWDEVKDNLNDIATDLSGGQQQRLCIARAIACKPSVLL-MDEPTSALDPIATS 221
Query: 241 KSMEGDSDVEKQYNQIVAT 259
K E +++++Y I+ T
Sbjct: 222 KIEELIMELKEKYTIIIVT 240
>sp|P55469|Y4GM_RHISN Uncharacterized ABC transporter ATP-binding protein y4gM
OS=Rhizobium sp. (strain NGR234) GN=NGR_a03510 PE=3 SV=1
Length = 586
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Query: 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFEND 130
+ KTT+L +GP G+GKSS++N I ++++ D
Sbjct: 369 FPAGKTTAL--VGPSGAGKSSIINLIMRLYDPD 399
>sp|B4U6S1|CLPX_HYDS0 ATP-dependent Clp protease ATP-binding subunit ClpX
OS=Hydrogenobaculum sp. (strain Y04AAS1) GN=clpX PE=3
SV=1
Length = 399
Score = 32.7 bits (73), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFA-SERAQVTYNSSVGD 147
SD D+ K+ ++LLIGP GSGK+ L ++K+ N FA ++ +T VG+
Sbjct: 96 SDTDIEKS-NILLIGPTGSGKTLLAKTLAKIL-NVPFAIADATTLTEAGYVGE 146
>sp|Q7MJ07|MSBA_VIBVY Lipid A export ATP-binding/permease protein MsbA OS=Vibrio
vulnificus (strain YJ016) GN=msbA PE=3 SV=2
Length = 583
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFEND 130
+D+P+ ++ L+G GSGKS++ N ++ ++ D
Sbjct: 364 FDIPRGKTVALVGRSGSGKSTIANLFTRFYDVD 396
>sp|Q606K1|HSLU_METCA ATP-dependent protease ATPase subunit HslU OS=Methylococcus
capsulatus (strain ATCC 33009 / NCIMB 11132 / Bath)
GN=hslU PE=3 SV=1
Length = 440
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 55 REVLQSYDQLRTRIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGS 114
RE++ D+ I +AK + W G L D PK ++L+IGP G
Sbjct: 7 REIVHELDK---HIVGQAEAKRAVAIALRNRWRRAQVGAPLRDEITPK--NILMIGPTGV 61
Query: 115 GKSSLVNRISKVFENDKFASERAQVTYNSSVG 146
GK+ + R++++ E + T VG
Sbjct: 62 GKTEIARRLARLANAPFIKVEATKFTEVGYVG 93
>sp|Q83DJ1|CLPX_COXBU ATP-dependent Clp protease ATP-binding subunit ClpX OS=Coxiella
burnetii (strain RSA 493 / Nine Mile phase I) GN=clpX
PE=3 SV=1
Length = 422
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 135
K+LS + +G T D +++LLIGP GSGK+ L ++K+ + ++
Sbjct: 81 KKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIAD 140
Query: 136 RAQVTYNSSVGD 147
+T VG+
Sbjct: 141 ATTLTEAGYVGE 152
>sp|B6J0V9|CLPX_COXB2 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Coxiella
burnetii (strain CbuG_Q212) GN=clpX PE=3 SV=1
Length = 422
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 135
K+LS + +G T D +++LLIGP GSGK+ L ++K+ + ++
Sbjct: 81 KKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIAD 140
Query: 136 RAQVTYNSSVGD 147
+T VG+
Sbjct: 141 ATTLTEAGYVGE 152
>sp|B6J8W3|CLPX_COXB1 ATP-dependent Clp protease ATP-binding subunit ClpX OS=Coxiella
burnetii (strain CbuK_Q154) GN=clpX PE=3 SV=1
Length = 422
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%)
Query: 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE 135
K+LS + +G T D +++LLIGP GSGK+ L ++K+ + ++
Sbjct: 81 KKVLSVAVYNHYKRLGNQTKKDSVEISKSNILLIGPTGSGKTLLAQTLAKILDVPFAIAD 140
Query: 136 RAQVTYNSSVGD 147
+T VG+
Sbjct: 141 ATTLTEAGYVGE 152
>sp|Q8DAV2|MSBA_VIBVU Lipid A export ATP-binding/permease protein MsbA OS=Vibrio
vulnificus (strain CMCP6) GN=msbA PE=3 SV=1
Length = 583
Score = 32.7 bits (73), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/33 (33%), Positives = 23/33 (69%)
Query: 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFEND 130
+D+P+ ++ L+G GSGKS++ N ++ ++ D
Sbjct: 364 FDIPRGKTVALVGRSGSGKSTIANLFTRFYDVD 396
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,213,249
Number of Sequences: 539616
Number of extensions: 6074062
Number of successful extensions: 27062
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 156
Number of HSP's that attempted gapping in prelim test: 26997
Number of HSP's gapped (non-prelim): 212
length of query: 397
length of database: 191,569,459
effective HSP length: 120
effective length of query: 277
effective length of database: 126,815,539
effective search space: 35127904303
effective search space used: 35127904303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)