Query 015952
Match_columns 397
No_of_seqs 481 out of 3068
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 05:22:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015952.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015952hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tui_C Methionine import ATP-b 100.0 7.7E-51 2.6E-55 407.3 22.0 216 68-313 21-257 (366)
2 3fvq_A Fe(3+) IONS import ATP- 100.0 1E-50 3.5E-55 405.9 21.8 210 71-313 4-232 (359)
3 3rlf_A Maltose/maltodextrin im 100.0 9.2E-51 3.1E-55 408.9 19.5 212 69-313 1-227 (381)
4 3tif_A Uncharacterized ABC tra 100.0 4.4E-49 1.5E-53 372.8 21.0 208 71-308 1-233 (235)
5 2yyz_A Sugar ABC transporter, 100.0 2.8E-49 9.7E-54 395.8 20.7 211 69-312 1-226 (359)
6 2it1_A 362AA long hypothetical 100.0 3.7E-49 1.3E-53 395.4 21.0 211 69-312 1-226 (362)
7 3gfo_A Cobalt import ATP-bindi 100.0 4.4E-49 1.5E-53 381.4 19.8 208 70-310 6-234 (275)
8 1v43_A Sugar-binding transport 100.0 5.7E-49 1.9E-53 395.3 21.1 211 69-312 9-234 (372)
9 1oxx_K GLCV, glucose, ABC tran 100.0 1E-48 3.4E-53 391.3 21.9 211 69-312 1-233 (353)
10 1z47_A CYSA, putative ABC-tran 100.0 6.9E-49 2.3E-53 392.4 19.0 211 69-312 12-238 (355)
11 1g29_1 MALK, maltose transport 100.0 1.3E-48 4.6E-53 392.8 19.8 210 70-312 2-232 (372)
12 3d31_A Sulfate/molybdate ABC t 100.0 2.1E-48 7.2E-53 388.1 18.9 208 71-313 1-221 (348)
13 4g1u_C Hemin import ATP-bindin 100.0 5.1E-48 1.8E-52 372.1 20.3 208 69-309 9-237 (266)
14 1b0u_A Histidine permease; ABC 100.0 7.2E-48 2.5E-52 370.2 21.2 209 70-312 5-245 (262)
15 2olj_A Amino acid ABC transpor 100.0 1.2E-47 4.2E-52 369.0 22.2 209 70-312 23-251 (263)
16 1ji0_A ABC transporter; ATP bi 100.0 9.6E-48 3.3E-52 364.5 20.7 207 69-309 4-228 (240)
17 2pcj_A ABC transporter, lipopr 100.0 1.1E-47 3.7E-52 360.7 20.6 200 70-303 3-222 (224)
18 1g6h_A High-affinity branched- 100.0 6E-48 2E-52 369.5 17.8 204 69-306 5-239 (257)
19 1vpl_A ABC transporter, ATP-bi 100.0 2E-47 7E-52 366.1 20.7 208 68-309 12-235 (256)
20 3nh6_A ATP-binding cassette SU 100.0 1.3E-47 4.5E-52 376.3 17.9 233 41-310 15-278 (306)
21 2onk_A Molybdate/tungstate ABC 100.0 5.4E-47 1.9E-51 359.9 19.1 205 71-311 1-218 (240)
22 2ff7_A Alpha-hemolysin translo 100.0 9.3E-46 3.2E-50 352.6 21.5 204 71-311 7-234 (247)
23 2yz2_A Putative ABC transporte 100.0 5.6E-46 1.9E-50 357.6 19.7 209 71-312 2-230 (266)
24 2nq2_C Hypothetical ABC transp 100.0 2.9E-45 9.8E-50 350.5 22.3 203 71-309 4-217 (253)
25 2ixe_A Antigen peptide transpo 100.0 2E-45 6.9E-50 354.9 20.3 209 69-310 14-246 (271)
26 2ihy_A ABC transporter, ATP-bi 100.0 8.3E-46 2.9E-50 359.1 17.6 209 69-309 19-252 (279)
27 2d2e_A SUFC protein; ABC-ATPas 100.0 2.3E-45 7.7E-50 350.3 19.6 203 69-305 1-229 (250)
28 1mv5_A LMRA, multidrug resista 100.0 1.8E-45 6.1E-50 349.4 18.3 203 71-309 1-226 (243)
29 3gd7_A Fusion complex of cysti 100.0 4.6E-45 1.6E-49 369.0 20.0 206 69-313 17-246 (390)
30 2zu0_C Probable ATP-dependent 100.0 1.2E-44 4E-49 348.7 21.4 206 69-308 18-253 (267)
31 3b5x_A Lipid A export ATP-bind 100.0 4E-44 1.4E-48 378.9 24.9 240 36-311 300-569 (582)
32 2cbz_A Multidrug resistance-as 100.0 3.7E-44 1.3E-48 339.5 21.7 207 69-310 1-218 (237)
33 2qi9_C Vitamin B12 import ATP- 100.0 1.1E-44 3.7E-49 345.9 17.7 199 71-309 4-222 (249)
34 2ghi_A Transport protein; mult 100.0 2.8E-44 9.7E-49 344.8 20.4 202 70-309 16-242 (260)
35 2pze_A Cystic fibrosis transme 100.0 7.4E-44 2.5E-48 335.6 21.4 201 70-310 5-219 (229)
36 4a82_A Cystic fibrosis transme 100.0 5.7E-44 1.9E-48 377.6 22.4 240 35-311 295-566 (578)
37 3b60_A Lipid A export ATP-bind 100.0 5.7E-44 2E-48 377.8 22.0 238 37-310 301-568 (582)
38 3qf4_A ABC transporter, ATP-bi 100.0 1.2E-43 4E-48 376.0 23.5 236 38-310 300-567 (587)
39 2yl4_A ATP-binding cassette SU 100.0 1.4E-43 4.8E-48 375.7 24.0 239 37-310 298-571 (595)
40 3qf4_B Uncharacterized ABC tra 100.0 5E-44 1.7E-48 379.5 19.6 238 36-310 312-579 (598)
41 1sgw_A Putative ABC transporte 100.0 2.7E-44 9.3E-49 335.9 15.1 193 69-298 8-210 (214)
42 4f4c_A Multidrug resistance pr 100.0 3.6E-43 1.2E-47 401.4 22.5 245 34-311 1031-1306(1321)
43 2pjz_A Hypothetical protein ST 100.0 8.9E-43 3E-47 335.2 16.9 199 71-309 1-215 (263)
44 4f4c_A Multidrug resistance pr 100.0 2E-41 7E-46 386.9 26.0 238 37-311 372-643 (1321)
45 2bbs_A Cystic fibrosis transme 100.0 3.3E-41 1.1E-45 328.6 19.0 197 69-309 38-247 (290)
46 1yqt_A RNAse L inhibitor; ATP- 100.0 1.1E-40 3.8E-45 349.9 16.8 203 69-308 285-492 (538)
47 3bk7_A ABC transporter ATP-bin 100.0 2.1E-40 7.1E-45 352.1 17.8 203 70-309 356-563 (607)
48 3g5u_A MCG1178, multidrug resi 100.0 6.1E-40 2.1E-44 373.9 22.1 240 38-310 345-614 (1284)
49 3g5u_A MCG1178, multidrug resi 100.0 7.6E-40 2.6E-44 373.1 18.5 234 45-311 995-1260(1284)
50 3ozx_A RNAse L inhibitor; ATP 100.0 8.8E-40 3E-44 343.0 17.3 200 70-305 268-473 (538)
51 3j16_B RLI1P; ribosome recycli 100.0 4.2E-39 1.4E-43 341.9 14.3 200 75-309 350-559 (608)
52 2iw3_A Elongation factor 3A; a 100.0 3.3E-37 1.1E-41 340.0 12.0 201 69-303 669-981 (986)
53 3ux8_A Excinuclease ABC, A sub 100.0 1.3E-34 4.5E-39 310.7 16.4 192 92-311 337-642 (670)
54 3ux8_A Excinuclease ABC, A sub 100.0 8.1E-35 2.8E-39 312.3 10.5 195 93-312 34-301 (670)
55 3bk7_A ABC transporter ATP-bin 100.0 9.6E-35 3.3E-39 308.6 9.8 191 70-296 82-304 (607)
56 1yqt_A RNAse L inhibitor; ATP- 100.0 1E-34 3.5E-39 304.7 9.0 189 72-296 21-234 (538)
57 2iw3_A Elongation factor 3A; a 100.0 7.2E-32 2.5E-36 297.6 19.6 194 70-308 434-634 (986)
58 3pih_A Uvrabc system protein A 100.0 1E-31 3.6E-36 295.5 17.0 198 93-312 600-905 (916)
59 2vf7_A UVRA2, excinuclease ABC 100.0 3.1E-31 1.1E-35 289.6 17.0 111 182-312 708-830 (842)
60 2r6f_A Excinuclease ABC subuni 100.0 3.9E-31 1.3E-35 290.2 17.4 254 23-312 528-945 (972)
61 3j16_B RLI1P; ribosome recycli 100.0 1.7E-31 5.7E-36 283.6 11.3 188 76-297 82-298 (608)
62 2ygr_A Uvrabc system protein A 100.0 1.1E-30 3.8E-35 287.4 17.0 255 23-312 545-963 (993)
63 3ozx_A RNAse L inhibitor; ATP 100.0 2.5E-31 8.6E-36 278.8 10.4 185 75-297 3-214 (538)
64 2npi_A Protein CLP1; CLP1-PCF1 100.0 2.3E-32 8E-37 281.7 -8.3 195 69-307 116-336 (460)
65 4aby_A DNA repair protein RECN 99.9 2.1E-27 7.1E-32 239.4 16.4 187 93-301 51-380 (415)
66 2v9p_A Replication protein E1; 99.9 4.8E-30 1.6E-34 251.4 -16.6 196 37-307 61-264 (305)
67 4gp7_A Metallophosphoesterase; 99.9 1E-25 3.5E-30 201.7 5.6 165 95-289 1-168 (171)
68 3b85_A Phosphate starvation-in 99.9 9.8E-27 3.4E-31 216.0 -6.3 148 93-298 16-172 (208)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 9.1E-24 3.1E-28 211.4 12.4 83 198-300 275-364 (365)
70 1tq4_A IIGP1, interferon-induc 99.9 8.3E-26 2.8E-30 229.7 -6.6 170 93-289 39-247 (413)
71 1e69_A Chromosome segregation 99.9 2.9E-23 9.9E-28 203.9 11.0 80 199-298 216-301 (322)
72 3b9q_A Chloroplast SRP recepto 99.9 2.4E-24 8.2E-29 210.6 -2.4 165 93-299 90-285 (302)
73 3aez_A Pantothenate kinase; tr 99.9 2.6E-25 9E-30 218.4 -11.9 137 69-229 41-203 (312)
74 1znw_A Guanylate kinase, GMP k 99.9 4.6E-25 1.6E-29 202.8 -9.7 166 93-294 12-202 (207)
75 2dpy_A FLII, flagellum-specifi 99.9 2.9E-24 9.9E-29 220.1 -5.1 189 69-311 129-346 (438)
76 1z6g_A Guanylate kinase; struc 99.9 1.4E-24 4.8E-29 201.9 -9.2 170 93-289 13-204 (218)
77 2og2_A Putative signal recogni 99.8 3.5E-23 1.2E-27 206.9 -1.4 164 94-299 148-342 (359)
78 1ye8_A Protein THEP1, hypothet 99.8 9.8E-22 3.3E-26 177.9 6.0 137 105-288 2-152 (178)
79 3sop_A Neuronal-specific septi 99.8 7.5E-23 2.6E-27 197.0 -4.6 137 105-279 4-148 (270)
80 2pt7_A CAG-ALFA; ATPase, prote 99.8 3.4E-22 1.2E-26 197.6 -0.5 130 93-297 161-291 (330)
81 2obl_A ESCN; ATPase, hydrolase 99.8 1.3E-21 4.6E-26 194.7 2.6 191 69-312 43-258 (347)
82 1cr0_A DNA primase/helicase; R 99.8 2.4E-21 8.2E-26 186.9 1.7 180 93-298 25-237 (296)
83 2o5v_A DNA replication and rep 99.8 1.5E-19 5.3E-24 180.6 12.6 81 202-307 265-354 (359)
84 2o8b_B DNA mismatch repair pro 99.8 4.7E-20 1.6E-24 205.7 5.6 172 69-304 748-937 (1022)
85 1tf7_A KAIC; homohexamer, hexa 99.8 1.1E-19 3.7E-24 189.8 6.4 156 97-297 275-444 (525)
86 2jeo_A Uridine-cytidine kinase 99.8 2.2E-20 7.5E-25 175.9 -1.9 122 93-229 15-142 (245)
87 3asz_A Uridine kinase; cytidin 99.7 3.6E-20 1.2E-24 169.4 -2.7 145 100-280 3-160 (211)
88 3qkt_A DNA double-strand break 99.7 1.8E-17 6E-22 163.8 16.3 77 198-294 244-327 (339)
89 1rj9_A FTSY, signal recognitio 99.7 2.1E-19 7.3E-24 175.7 0.2 140 102-279 101-256 (304)
90 2ehv_A Hypothetical protein PH 99.7 2.9E-19 9.9E-24 166.2 0.4 177 71-294 6-206 (251)
91 1tf7_A KAIC; homohexamer, hexa 99.7 6.3E-21 2.2E-25 199.1 -12.2 75 71-156 12-98 (525)
92 4ad8_A DNA repair protein RECN 99.7 7.2E-18 2.5E-22 175.7 10.5 77 200-297 394-474 (517)
93 2eyu_A Twitching motility prot 99.7 9.6E-19 3.3E-23 167.5 3.5 128 93-294 17-146 (261)
94 4a74_A DNA repair and recombin 99.7 1E-18 3.5E-23 160.5 2.1 154 99-296 21-200 (231)
95 3thx_A DNA mismatch repair pro 99.7 1.6E-18 5.5E-23 191.5 2.9 149 93-307 652-811 (934)
96 3pih_A Uvrabc system protein A 99.7 3E-18 1E-22 188.8 4.5 157 118-312 383-563 (916)
97 2qnr_A Septin-2, protein NEDD5 99.7 2.8E-19 9.6E-24 174.3 -4.9 155 75-280 2-166 (301)
98 1ewq_A DNA mismatch repair pro 99.7 7.9E-18 2.7E-22 182.8 4.0 144 93-303 569-718 (765)
99 2i3b_A HCR-ntpase, human cance 99.7 4.1E-19 1.4E-23 162.3 -5.3 152 103-302 1-169 (189)
100 2r6f_A Excinuclease ABC subuni 99.7 2.2E-16 7.7E-21 173.6 11.7 129 163-312 451-603 (972)
101 3thx_B DNA mismatch repair pro 99.7 7.1E-18 2.4E-22 186.0 -0.9 139 93-288 663-804 (918)
102 1pzn_A RAD51, DNA repair and r 99.6 1.1E-17 3.9E-22 166.3 -0.0 171 93-308 120-314 (349)
103 3szr_A Interferon-induced GTP- 99.6 2.7E-18 9.1E-23 182.5 -5.3 189 70-307 9-235 (608)
104 1pui_A ENGB, probable GTP-bind 99.6 6.8E-18 2.3E-22 153.0 -2.3 168 71-260 3-196 (210)
105 2qag_C Septin-7; cell cycle, c 99.6 9.7E-18 3.3E-22 170.7 -1.6 135 70-244 10-154 (418)
106 2w0m_A SSO2452; RECA, SSPF, un 99.6 6.9E-17 2.4E-21 147.9 3.3 163 93-297 12-193 (235)
107 3jvv_A Twitching mobility prot 99.6 5.7E-17 2E-21 161.8 2.3 140 75-296 92-246 (356)
108 2ygr_A Uvrabc system protein A 99.6 6E-16 2E-20 170.8 8.8 128 163-311 468-619 (993)
109 1lw7_A Transcriptional regulat 99.6 1.2E-18 3.9E-23 173.8 -12.1 182 93-308 158-354 (365)
110 1wb9_A DNA mismatch repair pro 99.6 1.3E-16 4.3E-21 174.2 1.6 154 93-303 598-752 (800)
111 1w1w_A Structural maintenance 99.6 1.1E-14 3.9E-19 147.9 15.3 73 202-294 333-410 (430)
112 2vf7_A UVRA2, excinuclease ABC 99.6 4E-15 1.4E-19 162.7 12.2 112 180-312 356-478 (842)
113 1f2t_B RAD50 ABC-ATPase; DNA d 99.6 5.5E-15 1.9E-19 130.0 8.0 81 197-297 52-141 (148)
114 1nlf_A Regulatory protein REPA 99.5 1.1E-14 3.7E-19 139.3 9.2 148 99-280 26-180 (279)
115 2yhs_A FTSY, cell division pro 99.5 2.5E-16 8.6E-21 162.8 -3.9 175 93-307 283-477 (503)
116 2gza_A Type IV secretion syste 99.5 2.5E-16 8.6E-21 157.2 -3.8 127 94-296 166-302 (361)
117 2qag_B Septin-6, protein NEDD5 99.5 2.2E-15 7.5E-20 153.5 0.5 174 71-279 16-217 (427)
118 2rcn_A Probable GTPase ENGC; Y 99.5 7.2E-15 2.5E-19 146.7 4.1 117 93-219 206-330 (358)
119 1nij_A Hypothetical protein YJ 99.5 4.4E-17 1.5E-21 159.8 -12.9 112 104-224 5-163 (318)
120 3e70_C DPA, signal recognition 99.5 7.8E-14 2.7E-18 137.7 10.2 156 99-299 125-307 (328)
121 2ewv_A Twitching motility prot 99.5 1.2E-14 4.1E-19 145.7 3.3 118 93-289 128-253 (372)
122 2qm8_A GTPase/ATPase; G protei 99.5 6.9E-17 2.3E-21 159.9 -13.7 80 69-159 27-120 (337)
123 1s96_A Guanylate kinase, GMP k 99.5 5.2E-15 1.8E-19 138.0 -0.4 59 96-159 9-75 (219)
124 2bdt_A BH3686; alpha-beta prot 99.5 8.2E-18 2.8E-22 151.2 -19.0 166 103-307 2-182 (189)
125 2cvh_A DNA repair and recombin 99.4 1.3E-13 4.6E-18 125.4 8.3 158 93-296 9-185 (220)
126 2yv5_A YJEQ protein; hydrolase 99.4 5.7E-15 2E-19 143.9 -0.9 110 99-215 161-300 (302)
127 2f1r_A Molybdopterin-guanine d 99.4 4.3E-16 1.5E-20 140.2 -9.0 100 104-224 3-125 (171)
128 1p9r_A General secretion pathw 99.4 6.4E-17 2.2E-21 164.7 -16.3 121 93-224 159-313 (418)
129 1htw_A HI0065; nucleotide-bind 99.4 1.1E-14 3.7E-19 129.3 -0.4 83 74-172 10-97 (158)
130 1zp6_A Hypothetical protein AT 99.4 6.1E-16 2.1E-20 138.6 -9.7 114 99-224 5-131 (191)
131 3c8u_A Fructokinase; YP_612366 99.4 1.1E-14 3.8E-19 133.4 -4.7 112 100-229 19-139 (208)
132 1u0l_A Probable GTPase ENGC; p 99.3 3.5E-14 1.2E-18 138.1 -2.7 102 98-205 164-294 (301)
133 1udx_A The GTP-binding protein 99.3 1E-13 3.5E-18 141.0 0.6 116 93-226 147-276 (416)
134 3kta_B Chromosome segregation 99.3 2.5E-12 8.6E-17 115.8 8.5 80 198-297 60-145 (173)
135 2bbw_A Adenylate kinase 4, AK4 99.3 3E-14 1E-18 133.7 -6.2 63 102-172 26-97 (246)
136 1n0w_A DNA repair protein RAD5 99.3 1.7E-11 5.6E-16 113.2 12.1 30 99-128 20-51 (243)
137 1odf_A YGR205W, hypothetical 3 99.3 1.1E-13 3.6E-18 134.4 -3.4 114 101-229 29-161 (290)
138 2x8a_A Nuclear valosin-contain 99.2 4.9E-15 1.7E-19 142.4 -16.1 115 93-229 36-162 (274)
139 1t9h_A YLOQ, probable GTPase E 99.2 4.8E-13 1.6E-17 130.9 -2.4 107 98-210 168-303 (307)
140 2oap_1 GSPE-2, type II secreti 99.2 8.1E-13 2.8E-17 137.7 -3.3 71 93-171 250-327 (511)
141 3euj_A Chromosome partition pr 99.1 1.7E-11 5.9E-16 126.6 2.9 46 93-144 20-65 (483)
142 1sq5_A Pantothenate kinase; P- 99.1 6.5E-13 2.2E-17 129.4 -7.8 88 70-172 36-151 (308)
143 1lvg_A Guanylate kinase, GMP k 99.1 6.6E-12 2.3E-16 114.4 -0.6 123 101-249 2-143 (198)
144 1in4_A RUVB, holliday junction 99.1 6.7E-14 2.3E-18 137.7 -15.1 128 71-214 18-174 (334)
145 3lda_A DNA repair protein RAD5 99.1 2.5E-10 8.6E-15 115.5 10.6 30 99-128 174-205 (400)
146 1vma_A Cell division protein F 99.1 8.7E-11 3E-15 114.8 5.9 96 96-229 97-195 (306)
147 1sxj_E Activator 1 40 kDa subu 99.1 7.9E-11 2.7E-15 115.1 5.4 47 105-156 38-93 (354)
148 2kjq_A DNAA-related protein; s 99.0 1E-10 3.4E-15 102.3 3.8 34 90-128 28-61 (149)
149 1iy2_A ATP-dependent metallopr 99.0 7.3E-13 2.5E-17 126.4 -11.0 108 93-224 65-191 (278)
150 3auy_A DNA double-strand break 99.0 6.7E-10 2.3E-14 110.7 9.8 74 200-294 278-359 (371)
151 3ec2_A DNA replication protein 99.0 1.9E-10 6.5E-15 102.2 4.9 36 97-137 32-67 (180)
152 1ixz_A ATP-dependent metallopr 99.0 6.8E-13 2.3E-17 124.6 -11.8 108 93-224 41-167 (254)
153 3tr0_A Guanylate kinase, GMP k 99.0 2.9E-11 1E-15 109.0 -1.1 64 97-172 1-74 (205)
154 2dr3_A UPF0273 protein PH0284; 99.0 1.6E-10 5.3E-15 106.7 2.4 36 93-128 12-49 (247)
155 2ius_A DNA translocase FTSK; n 98.9 3.7E-11 1.3E-15 124.9 -2.8 171 95-291 159-361 (512)
156 3lnc_A Guanylate kinase, GMP k 98.9 1.6E-10 5.3E-15 107.1 1.2 36 93-128 17-53 (231)
157 1qhl_A Protein (cell division 98.9 4.8E-11 1.6E-15 111.9 -2.7 55 71-144 9-63 (227)
158 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 3.9E-11 1.3E-15 121.1 -6.1 156 99-304 16-208 (392)
159 1ls1_A Signal recognition part 98.8 6.1E-09 2.1E-13 101.0 8.0 113 72-229 77-189 (295)
160 2px0_A Flagellar biosynthesis 98.8 1.3E-08 4.5E-13 98.7 9.3 141 101-300 103-246 (296)
161 2r6a_A DNAB helicase, replicat 98.8 1E-08 3.6E-13 104.8 7.8 166 93-298 193-401 (454)
162 3nwj_A ATSK2; P loop, shikimat 98.7 6.1E-10 2.1E-14 105.7 -1.6 54 70-128 16-73 (250)
163 3kta_A Chromosome segregation 98.7 4.2E-09 1.4E-13 93.3 3.7 111 94-212 18-152 (182)
164 3k1j_A LON protease, ATP-depen 98.7 3E-10 1E-14 120.4 -5.4 132 93-229 50-210 (604)
165 1svm_A Large T antigen; AAA+ f 98.7 1.2E-10 4.2E-15 116.9 -8.4 129 93-238 159-311 (377)
166 1oix_A RAS-related protein RAB 98.7 2.8E-09 9.6E-14 95.5 0.8 41 105-145 31-77 (191)
167 2zr9_A Protein RECA, recombina 98.6 1.8E-08 6E-13 100.1 5.3 30 99-128 57-86 (349)
168 2j41_A Guanylate kinase; GMP, 98.5 5.9E-08 2E-12 87.1 4.1 31 98-128 1-31 (207)
169 4eun_A Thermoresistant glucoki 98.5 7.7E-09 2.6E-13 93.6 -2.0 39 97-144 23-61 (200)
170 4e22_A Cytidylate kinase; P-lo 98.5 1.5E-08 5E-13 95.6 -0.5 50 101-155 25-96 (252)
171 3uie_A Adenylyl-sulfate kinase 98.5 1.3E-08 4.5E-13 92.1 -1.0 58 75-144 3-62 (200)
172 2dhr_A FTSH; AAA+ protein, hex 98.5 2.5E-09 8.6E-14 111.0 -6.8 111 93-229 56-185 (499)
173 3vaa_A Shikimate kinase, SK; s 98.4 8.6E-08 2.9E-12 86.6 3.1 36 93-128 15-50 (199)
174 3t34_A Dynamin-related protein 98.4 1E-06 3.6E-11 87.0 11.1 41 93-141 27-69 (360)
175 3a00_A Guanylate kinase, GMP k 98.4 9E-08 3.1E-12 85.6 2.6 26 103-128 1-26 (186)
176 1kgd_A CASK, peripheral plasma 98.4 1.2E-07 4.1E-12 84.5 2.9 28 101-128 3-30 (180)
177 1zu4_A FTSY; GTPase, signal re 98.4 1.1E-07 3.9E-12 93.2 2.7 47 93-144 95-141 (320)
178 3hr8_A Protein RECA; alpha and 98.3 1.2E-07 4.2E-12 94.3 0.6 36 99-139 57-92 (356)
179 1rz3_A Hypothetical protein rb 98.2 4.1E-07 1.4E-11 82.4 2.3 40 99-143 18-57 (201)
180 2qtf_A Protein HFLX, GTP-bindi 98.1 1.1E-06 3.8E-11 87.5 4.5 119 105-224 181-331 (364)
181 3tau_A Guanylate kinase, GMP k 98.1 1E-06 3.4E-11 80.3 3.6 28 101-128 6-33 (208)
182 3tqc_A Pantothenate kinase; bi 98.1 4.5E-07 1.6E-11 89.0 0.3 36 93-128 76-117 (321)
183 3cr8_A Sulfate adenylyltranfer 98.1 9E-07 3.1E-11 92.9 2.2 41 99-144 365-407 (552)
184 2vp4_A Deoxynucleoside kinase; 98.1 1.2E-06 4.3E-11 80.9 2.8 38 98-144 15-52 (230)
185 4a1f_A DNAB helicase, replicat 98.1 3.2E-06 1.1E-10 83.5 5.5 101 93-229 36-136 (338)
186 2ce7_A Cell division protein F 98.0 4.5E-06 1.5E-10 86.1 5.7 34 93-128 41-74 (476)
187 2qt1_A Nicotinamide riboside k 98.0 3.2E-06 1.1E-10 76.3 3.9 43 98-158 16-58 (207)
188 3ney_A 55 kDa erythrocyte memb 98.0 3.1E-06 1E-10 77.5 3.4 32 97-128 13-44 (197)
189 2f9l_A RAB11B, member RAS onco 98.0 4.4E-06 1.5E-10 74.6 4.2 41 105-145 7-53 (199)
190 2xau_A PRE-mRNA-splicing facto 97.9 1.2E-05 4E-10 87.6 7.7 29 100-128 106-134 (773)
191 1kag_A SKI, shikimate kinase I 97.9 4.1E-06 1.4E-10 73.0 3.1 27 102-128 3-29 (173)
192 1knq_A Gluconate kinase; ALFA/ 97.9 3.9E-06 1.3E-10 73.5 2.9 27 101-127 6-32 (175)
193 1f2t_A RAD50 ABC-ATPase; DNA d 97.9 8.2E-06 2.8E-10 70.9 4.2 34 93-127 14-47 (149)
194 3ice_A Transcription terminati 97.9 1.6E-06 5.6E-11 87.1 -0.4 54 70-128 132-199 (422)
195 3m6a_A ATP-dependent protease 97.9 2.8E-06 9.5E-11 88.9 1.0 46 93-144 99-144 (543)
196 2pez_A Bifunctional 3'-phospho 97.8 5.9E-06 2E-10 72.8 2.8 38 101-144 3-42 (179)
197 2p67_A LAO/AO transport system 97.8 2.4E-06 8.2E-11 84.1 0.2 62 71-143 30-91 (341)
198 1v5w_A DMC1, meiotic recombina 97.8 6E-05 2.1E-09 74.1 10.2 28 99-126 118-145 (343)
199 1cke_A CK, MSSA, protein (cyti 97.8 3.1E-06 1.1E-10 77.0 0.9 34 103-141 5-41 (227)
200 1sxj_C Activator 1 40 kDa subu 97.8 1.2E-07 4.2E-12 92.6 -9.1 36 93-128 34-71 (340)
201 3bh0_A DNAB-like replicative h 97.8 8.2E-06 2.8E-10 79.4 3.4 103 93-229 58-160 (315)
202 1fnn_A CDC6P, cell division co 97.8 0.00017 5.9E-09 70.2 12.9 24 105-128 46-69 (389)
203 4eaq_A DTMP kinase, thymidylat 97.8 9.9E-06 3.4E-10 75.3 3.7 42 93-140 13-57 (229)
204 2e87_A Hypothetical protein PH 97.7 1.4E-05 4.7E-10 78.9 3.9 27 102-128 166-192 (357)
205 2www_A Methylmalonic aciduria 97.7 9.6E-06 3.3E-10 80.1 2.6 39 101-144 72-110 (349)
206 1m7g_A Adenylylsulfate kinase; 97.7 9.1E-06 3.1E-10 73.8 2.1 42 98-144 20-63 (211)
207 2z43_A DNA repair and recombin 97.7 7.7E-05 2.6E-09 72.6 8.3 28 99-126 103-130 (324)
208 3qks_A DNA double-strand break 97.6 3.1E-05 1.1E-09 70.5 4.2 34 93-127 14-47 (203)
209 2qag_A Septin-2, protein NEDD5 97.6 2.2E-06 7.5E-11 85.1 -4.6 84 70-173 16-106 (361)
210 1f6b_A SAR1; gtpases, N-termin 97.6 1.3E-05 4.3E-10 71.8 0.4 32 93-125 16-47 (198)
211 3kl4_A SRP54, signal recogniti 97.5 0.00028 9.4E-09 71.9 10.1 37 102-143 96-132 (433)
212 2dy1_A Elongation factor G; tr 97.5 2.4E-05 8.1E-10 83.8 2.3 118 97-224 3-131 (665)
213 1m2o_B GTP-binding protein SAR 97.5 5.8E-05 2E-09 66.9 4.5 32 93-125 14-45 (190)
214 1jjv_A Dephospho-COA kinase; P 97.5 4.6E-05 1.6E-09 68.4 3.5 78 105-224 4-81 (206)
215 2ffh_A Protein (FFH); SRP54, s 97.5 3.1E-05 1.1E-09 78.7 2.5 55 74-143 79-133 (425)
216 2z4s_A Chromosomal replication 97.5 5.9E-05 2E-09 76.7 4.6 26 103-128 130-155 (440)
217 2gj8_A MNME, tRNA modification 97.5 8.2E-05 2.8E-09 64.9 4.8 27 101-127 2-28 (172)
218 2yvu_A Probable adenylyl-sulfa 97.5 4.6E-05 1.6E-09 67.4 2.9 38 98-140 8-45 (186)
219 3b9p_A CG5977-PA, isoform A; A 97.5 0.00096 3.3E-08 63.1 12.3 27 102-128 53-79 (297)
220 1mky_A Probable GTP-binding pr 97.5 0.00012 4E-09 74.3 6.2 40 105-144 182-228 (439)
221 1y63_A LMAJ004144AAA protein; 97.4 5.7E-05 1.9E-09 67.1 3.2 32 95-126 2-33 (184)
222 2qor_A Guanylate kinase; phosp 97.4 5.4E-05 1.9E-09 68.2 3.0 29 100-128 9-37 (204)
223 2qby_A CDC6 homolog 1, cell di 97.4 0.00026 8.7E-09 68.6 7.9 28 101-128 43-70 (386)
224 1j8m_F SRP54, signal recogniti 97.4 2.2E-05 7.6E-10 76.0 0.1 56 74-143 77-133 (297)
225 2q6t_A DNAB replication FORK h 97.3 0.00077 2.6E-08 68.4 10.5 36 93-128 190-225 (444)
226 2if2_A Dephospho-COA kinase; a 97.3 8.6E-05 3E-09 66.4 2.9 21 105-125 3-23 (204)
227 1u94_A RECA protein, recombina 97.3 0.0016 5.6E-08 64.4 12.1 29 100-128 60-88 (356)
228 2wjg_A FEOB, ferrous iron tran 97.3 0.00016 5.4E-09 63.1 4.1 22 105-126 9-30 (188)
229 2ohf_A Protein OLA1, GTP-bindi 97.2 0.00014 4.9E-09 73.2 3.8 41 99-144 18-69 (396)
230 1ega_A Protein (GTP-binding pr 97.2 9.9E-05 3.4E-09 71.2 2.1 26 102-127 7-32 (301)
231 3auy_A DNA double-strand break 97.2 0.0002 6.8E-09 71.0 4.1 31 93-124 16-46 (371)
232 2zej_A Dardarin, leucine-rich 97.2 0.00017 5.7E-09 63.3 3.1 24 105-128 4-27 (184)
233 2wji_A Ferrous iron transport 97.2 0.00019 6.6E-09 61.8 3.4 24 105-128 5-28 (165)
234 1np6_A Molybdopterin-guanine d 97.1 0.00022 7.5E-09 63.6 3.4 25 104-128 7-31 (174)
235 3t61_A Gluconokinase; PSI-biol 97.1 0.00019 6.7E-09 64.2 3.0 26 103-128 18-43 (202)
236 3cm0_A Adenylate kinase; ATP-b 97.1 0.00022 7.6E-09 62.5 3.1 26 101-126 2-27 (186)
237 1lv7_A FTSH; alpha/beta domain 97.0 0.00021 7.3E-09 66.4 2.4 31 96-128 40-70 (257)
238 3kb2_A SPBC2 prophage-derived 97.0 0.00033 1.1E-08 60.2 3.4 24 105-128 3-26 (173)
239 2ga8_A Hypothetical 39.9 kDa p 97.0 8.7E-05 3E-09 73.7 -0.5 36 93-128 12-49 (359)
240 1q3t_A Cytidylate kinase; nucl 97.0 0.00037 1.3E-08 64.2 3.6 28 100-127 13-40 (236)
241 1qhx_A CPT, protein (chloramph 97.0 0.00044 1.5E-08 60.2 3.8 26 103-128 3-28 (178)
242 2p5t_B PEZT; postsegregational 97.0 0.00034 1.2E-08 65.4 3.2 39 99-144 28-66 (253)
243 1gtv_A TMK, thymidylate kinase 96.9 0.00018 6E-09 64.6 0.9 24 105-128 2-25 (214)
244 3r20_A Cytidylate kinase; stru 96.9 0.00032 1.1E-08 65.6 2.5 26 103-128 9-34 (233)
245 3ihw_A Centg3; RAS, centaurin, 96.9 0.0015 5E-08 57.5 6.6 33 105-137 22-54 (184)
246 1kht_A Adenylate kinase; phosp 96.9 0.00053 1.8E-08 60.0 3.6 26 103-128 3-28 (192)
247 3lxx_A GTPase IMAP family memb 96.9 0.00058 2E-08 62.8 3.8 24 105-128 31-54 (239)
248 3lw7_A Adenylate kinase relate 96.8 0.00055 1.9E-08 58.5 3.3 19 105-123 3-21 (179)
249 2rhm_A Putative kinase; P-loop 96.8 0.00057 1.9E-08 60.0 3.2 27 101-127 3-29 (193)
250 1vht_A Dephospho-COA kinase; s 96.8 0.00066 2.2E-08 61.4 3.7 24 102-125 3-26 (218)
251 3io5_A Recombination and repai 96.8 0.0032 1.1E-07 61.7 8.6 28 100-128 26-54 (333)
252 1ypw_A Transitional endoplasmi 96.8 0.00043 1.5E-08 75.7 2.6 31 98-128 233-263 (806)
253 2jaq_A Deoxyguanosine kinase; 96.8 0.00068 2.3E-08 59.9 3.2 24 105-128 2-25 (205)
254 3trf_A Shikimate kinase, SK; a 96.7 0.00083 2.8E-08 58.9 3.6 27 102-128 4-30 (185)
255 2v54_A DTMP kinase, thymidylat 96.7 0.00097 3.3E-08 59.2 3.9 26 102-127 3-28 (204)
256 3iij_A Coilin-interacting nucl 96.7 0.00085 2.9E-08 58.7 3.2 27 101-127 9-35 (180)
257 1ex7_A Guanylate kinase; subst 96.7 0.00082 2.8E-08 60.6 3.1 23 106-128 4-26 (186)
258 1uf9_A TT1252 protein; P-loop, 96.7 0.00093 3.2E-08 59.1 3.4 24 103-126 8-31 (203)
259 3cf0_A Transitional endoplasmi 96.7 0.0008 2.7E-08 64.5 3.1 30 99-128 45-74 (301)
260 1ly1_A Polynucleotide kinase; 96.6 0.001 3.4E-08 57.6 3.4 22 104-125 3-24 (181)
261 4ag6_A VIRB4 ATPase, type IV s 96.6 0.0008 2.7E-08 66.8 3.1 38 102-144 34-71 (392)
262 2ze6_A Isopentenyl transferase 96.6 0.00088 3E-08 62.8 3.2 24 105-128 3-26 (253)
263 2c95_A Adenylate kinase 1; tra 96.6 0.0011 3.7E-08 58.4 3.5 28 101-128 7-34 (196)
264 2plr_A DTMP kinase, probable t 96.6 0.0012 4E-08 58.8 3.6 27 102-128 3-29 (213)
265 2wwf_A Thymidilate kinase, put 96.6 0.0012 4E-08 59.0 3.5 28 101-128 8-35 (212)
266 1via_A Shikimate kinase; struc 96.6 0.0011 3.7E-08 57.9 3.2 24 105-128 6-29 (175)
267 3k53_A Ferrous iron transport 96.6 0.0011 3.6E-08 62.5 3.1 24 105-128 5-28 (271)
268 1nn5_A Similar to deoxythymidy 96.5 0.0013 4.5E-08 58.7 3.5 29 100-128 6-34 (215)
269 1jal_A YCHF protein; nucleotid 96.5 0.0018 6E-08 64.5 4.7 42 103-144 2-49 (363)
270 1z2a_A RAS-related protein RAB 96.5 0.0019 6.5E-08 54.5 4.3 24 105-128 7-30 (168)
271 1nks_A Adenylate kinase; therm 96.5 0.0013 4.3E-08 57.5 3.1 24 105-128 3-26 (194)
272 1tev_A UMP-CMP kinase; ploop, 96.5 0.0015 5E-08 57.2 3.5 25 103-127 3-27 (196)
273 1gvn_B Zeta; postsegregational 96.5 0.0012 4.2E-08 63.1 3.2 27 101-127 31-57 (287)
274 1c1y_A RAS-related protein RAP 96.5 0.0027 9.2E-08 53.5 5.0 23 105-127 5-27 (167)
275 1u8z_A RAS-related protein RAL 96.5 0.0028 9.7E-08 53.2 5.0 23 105-127 6-28 (168)
276 1z0j_A RAB-22, RAS-related pro 96.5 0.0025 8.4E-08 53.9 4.6 24 105-128 8-31 (170)
277 1xjc_A MOBB protein homolog; s 96.5 0.0012 4E-08 58.8 2.6 25 104-128 5-29 (169)
278 1ek0_A Protein (GTP-binding pr 96.4 0.0025 8.5E-08 53.8 4.5 24 105-128 5-28 (170)
279 4fcw_A Chaperone protein CLPB; 96.4 0.0014 4.8E-08 62.0 3.3 31 104-139 48-78 (311)
280 2ged_A SR-beta, signal recogni 96.4 0.0015 5.2E-08 57.1 3.2 24 105-128 50-73 (193)
281 1xp8_A RECA protein, recombina 96.4 0.019 6.4E-07 57.0 11.5 28 99-126 70-97 (366)
282 2z0h_A DTMP kinase, thymidylat 96.4 0.0016 5.4E-08 57.3 3.3 24 105-128 2-25 (197)
283 1ko7_A HPR kinase/phosphatase; 96.4 0.0027 9.1E-08 62.0 5.2 32 93-125 135-166 (314)
284 2fn4_A P23, RAS-related protei 96.4 0.0046 1.6E-07 52.8 6.2 23 105-127 11-33 (181)
285 2erx_A GTP-binding protein DI- 96.4 0.0033 1.1E-07 53.1 5.2 23 105-127 5-27 (172)
286 1kao_A RAP2A; GTP-binding prot 96.4 0.0032 1.1E-07 52.8 5.1 23 105-127 5-27 (167)
287 2ew1_A RAS-related protein RAB 96.4 0.0044 1.5E-07 55.5 6.2 23 105-127 28-50 (201)
288 1ky3_A GTP-binding protein YPT 96.4 0.0023 7.8E-08 54.8 4.0 23 105-127 10-32 (182)
289 2nzj_A GTP-binding protein REM 96.4 0.0017 5.9E-08 55.3 3.2 24 105-128 6-29 (175)
290 3ake_A Cytidylate kinase; CMP 96.4 0.0017 5.8E-08 57.6 3.2 24 105-128 4-27 (208)
291 1z08_A RAS-related protein RAB 96.4 0.0027 9.3E-08 53.8 4.3 23 105-127 8-30 (170)
292 2oil_A CATX-8, RAS-related pro 96.4 0.0056 1.9E-07 53.4 6.5 24 105-128 27-50 (193)
293 2dyk_A GTP-binding protein; GT 96.3 0.0017 6E-08 54.5 3.0 23 105-127 3-25 (161)
294 2bcg_Y Protein YP2, GTP-bindin 96.3 0.0052 1.8E-07 54.3 6.2 24 105-128 10-33 (206)
295 3q72_A GTP-binding protein RAD 96.3 0.0015 5E-08 55.4 2.5 24 105-128 4-27 (166)
296 2ce2_X GTPase HRAS; signaling 96.3 0.0016 5.5E-08 54.6 2.7 24 105-128 5-28 (166)
297 2vli_A Antibiotic resistance p 96.3 0.0014 4.9E-08 57.0 2.4 27 102-128 4-30 (183)
298 1wms_A RAB-9, RAB9, RAS-relate 96.3 0.0027 9.4E-08 54.2 4.1 23 105-127 9-31 (177)
299 3q85_A GTP-binding protein REM 96.3 0.002 6.8E-08 54.7 3.1 24 105-128 4-27 (169)
300 2lkc_A Translation initiation 96.3 0.0026 8.9E-08 54.5 3.9 27 101-127 6-32 (178)
301 2bwj_A Adenylate kinase 5; pho 96.3 0.002 6.9E-08 56.7 3.3 29 100-128 9-37 (199)
302 3tw8_B RAS-related protein RAB 96.3 0.0028 9.7E-08 54.1 4.0 24 105-128 11-34 (181)
303 3bc1_A RAS-related protein RAB 96.3 0.0032 1.1E-07 54.3 4.3 23 105-127 13-35 (195)
304 4dsu_A GTPase KRAS, isoform 2B 96.3 0.0044 1.5E-07 53.4 5.1 23 105-127 6-28 (189)
305 3clv_A RAB5 protein, putative; 96.2 0.0033 1.1E-07 54.5 4.3 24 105-128 9-32 (208)
306 2efe_B Small GTP-binding prote 96.2 0.0073 2.5E-07 51.7 6.5 24 105-128 14-37 (181)
307 1g16_A RAS-related protein SEC 96.2 0.0019 6.4E-08 54.7 2.7 23 105-127 5-27 (170)
308 1aky_A Adenylate kinase; ATP:A 96.2 0.0026 8.9E-08 57.6 3.8 27 102-128 3-29 (220)
309 3b1v_A Ferrous iron uptake tra 96.2 0.0023 7.7E-08 60.9 3.4 23 105-127 5-27 (272)
310 1r2q_A RAS-related protein RAB 96.2 0.0039 1.3E-07 52.6 4.5 23 105-127 8-30 (170)
311 3pqc_A Probable GTP-binding pr 96.2 0.002 6.8E-08 55.9 2.6 23 105-127 25-47 (195)
312 1fzq_A ADP-ribosylation factor 96.2 0.0019 6.4E-08 56.4 2.5 23 104-126 17-39 (181)
313 1svi_A GTP-binding protein YSX 96.2 0.002 6.9E-08 56.2 2.6 25 103-127 23-47 (195)
314 2pbr_A DTMP kinase, thymidylat 96.2 0.0026 8.8E-08 55.6 3.3 23 105-127 2-24 (195)
315 1zd8_A GTP:AMP phosphotransfer 96.2 0.0025 8.6E-08 58.1 3.3 27 101-127 5-31 (227)
316 2a9k_A RAS-related protein RAL 96.2 0.005 1.7E-07 52.9 5.0 23 105-127 20-42 (187)
317 3lxw_A GTPase IMAP family memb 96.2 0.0024 8.2E-08 59.5 3.2 24 105-128 23-46 (247)
318 1e6c_A Shikimate kinase; phosp 96.2 0.0023 7.9E-08 55.1 2.8 25 104-128 3-27 (173)
319 1ukz_A Uridylate kinase; trans 96.2 0.003 1E-07 56.2 3.6 27 101-127 13-39 (203)
320 3fb4_A Adenylate kinase; psych 96.2 0.0026 9.1E-08 57.1 3.3 23 105-127 2-24 (216)
321 2cdn_A Adenylate kinase; phosp 96.2 0.0032 1.1E-07 56.1 3.8 27 102-128 19-45 (201)
322 2bov_A RAla, RAS-related prote 96.2 0.0053 1.8E-07 53.9 5.3 23 105-127 16-38 (206)
323 3llm_A ATP-dependent RNA helic 96.1 0.0018 6.3E-08 59.4 2.2 58 100-171 73-130 (235)
324 1zak_A Adenylate kinase; ATP:A 96.1 0.0023 8E-08 58.0 2.9 27 102-128 4-30 (222)
325 2cxx_A Probable GTP-binding pr 96.1 0.0023 7.8E-08 55.4 2.6 23 105-127 3-25 (190)
326 2a5j_A RAS-related protein RAB 96.1 0.0071 2.4E-07 52.9 5.9 24 105-128 23-46 (191)
327 1upt_A ARL1, ADP-ribosylation 96.1 0.0027 9.2E-08 53.9 2.9 23 104-126 8-30 (171)
328 3cmw_A Protein RECA, recombina 96.1 0.018 6.1E-07 67.4 10.6 30 99-128 728-757 (1706)
329 2y8e_A RAB-protein 6, GH09086P 96.1 0.0039 1.3E-07 53.1 4.0 23 105-127 16-38 (179)
330 2hxs_A RAB-26, RAS-related pro 96.1 0.003 1E-07 54.0 3.2 23 105-127 8-30 (178)
331 2pt5_A Shikimate kinase, SK; a 96.1 0.0032 1.1E-07 54.0 3.4 24 105-128 2-25 (168)
332 1z06_A RAS-related protein RAB 96.1 0.0095 3.2E-07 51.9 6.5 23 105-127 22-44 (189)
333 1qf9_A UMP/CMP kinase, protein 96.1 0.0028 9.6E-08 55.2 3.0 26 103-128 6-31 (194)
334 1m7b_A RND3/RHOE small GTP-bin 96.1 0.005 1.7E-07 53.5 4.6 24 105-128 9-32 (184)
335 1r8s_A ADP-ribosylation factor 96.1 0.0028 9.6E-08 53.5 2.9 21 106-126 3-23 (164)
336 1zuh_A Shikimate kinase; alpha 96.1 0.0035 1.2E-07 54.1 3.5 25 104-128 8-32 (168)
337 2gf9_A RAS-related protein RAB 96.1 0.0047 1.6E-07 53.9 4.3 24 105-128 24-47 (189)
338 3dl0_A Adenylate kinase; phosp 96.0 0.0033 1.1E-07 56.6 3.3 24 105-128 2-25 (216)
339 3cph_A RAS-related protein SEC 96.0 0.0097 3.3E-07 52.5 6.4 24 104-127 21-44 (213)
340 3bos_A Putative DNA replicatio 96.0 0.0036 1.2E-07 56.2 3.6 27 102-128 51-77 (242)
341 3kkq_A RAS-related protein M-R 96.0 0.0063 2.2E-07 52.4 5.0 24 105-128 20-43 (183)
342 1moz_A ARL1, ADP-ribosylation 96.0 0.0018 6.1E-08 55.9 1.5 24 102-125 17-40 (183)
343 2w58_A DNAI, primosome compone 96.0 0.0036 1.2E-07 55.6 3.5 25 104-128 55-79 (202)
344 2g6b_A RAS-related protein RAB 96.0 0.0031 1.1E-07 54.1 2.9 24 105-128 12-35 (180)
345 2bme_A RAB4A, RAS-related prot 96.0 0.0048 1.7E-07 53.2 4.2 24 105-128 12-35 (186)
346 2fg5_A RAB-22B, RAS-related pr 96.0 0.0049 1.7E-07 54.1 4.3 23 105-127 25-47 (192)
347 1z0f_A RAB14, member RAS oncog 96.0 0.0032 1.1E-07 53.7 2.9 23 105-127 17-39 (179)
348 2gf0_A GTP-binding protein DI- 96.0 0.0058 2E-07 53.3 4.7 23 105-127 10-32 (199)
349 2iyv_A Shikimate kinase, SK; t 96.0 0.0029 9.9E-08 55.4 2.7 25 104-128 3-27 (184)
350 3t1o_A Gliding protein MGLA; G 96.0 0.0035 1.2E-07 54.4 3.3 24 105-128 16-39 (198)
351 3tkl_A RAS-related protein RAB 96.0 0.0056 1.9E-07 53.3 4.5 24 105-128 18-41 (196)
352 1vg8_A RAS-related protein RAB 96.0 0.0056 1.9E-07 53.9 4.6 24 105-128 10-33 (207)
353 3con_A GTPase NRAS; structural 96.0 0.0032 1.1E-07 54.8 2.9 23 105-127 23-45 (190)
354 3oes_A GTPase rhebl1; small GT 96.0 0.0058 2E-07 54.0 4.7 25 104-128 25-49 (201)
355 1wf3_A GTP-binding protein; GT 96.0 0.0035 1.2E-07 60.4 3.4 23 105-127 9-31 (301)
356 3iev_A GTP-binding protein ERA 96.0 0.0036 1.2E-07 60.3 3.4 23 105-127 12-34 (308)
357 3t5d_A Septin-7; GTP-binding p 96.0 0.0028 9.4E-08 59.8 2.5 23 105-127 10-32 (274)
358 1zbd_A Rabphilin-3A; G protein 96.0 0.0058 2E-07 53.8 4.5 24 105-128 10-33 (203)
359 1uj2_A Uridine-cytidine kinase 95.9 0.0038 1.3E-07 58.0 3.3 25 104-128 23-47 (252)
360 3t5g_A GTP-binding protein RHE 95.9 0.0068 2.3E-07 52.1 4.7 21 105-125 8-28 (181)
361 3reg_A RHO-like small GTPase; 95.9 0.0073 2.5E-07 52.8 4.9 24 105-128 25-48 (194)
362 1x3s_A RAS-related protein RAB 95.9 0.0065 2.2E-07 52.7 4.6 24 105-128 17-40 (195)
363 1nrj_B SR-beta, signal recogni 95.9 0.0037 1.3E-07 55.9 2.9 24 105-128 14-37 (218)
364 3a4m_A L-seryl-tRNA(SEC) kinas 95.9 0.0045 1.5E-07 58.0 3.6 26 102-127 3-28 (260)
365 1jbk_A CLPB protein; beta barr 95.9 0.0052 1.8E-07 52.6 3.8 28 101-128 41-68 (195)
366 3cbq_A GTP-binding protein REM 95.9 0.003 1E-07 56.0 2.2 23 105-127 25-47 (195)
367 2grj_A Dephospho-COA kinase; T 95.9 0.0044 1.5E-07 55.9 3.3 24 103-126 12-35 (192)
368 1ksh_A ARF-like protein 2; sma 95.9 0.004 1.4E-07 54.0 2.9 35 102-137 17-51 (186)
369 3tlx_A Adenylate kinase 2; str 95.9 0.0049 1.7E-07 57.1 3.7 26 102-127 28-53 (243)
370 3iby_A Ferrous iron transport 95.9 0.004 1.4E-07 58.5 3.1 23 105-127 3-25 (256)
371 1a7j_A Phosphoribulokinase; tr 95.8 0.0024 8.1E-08 61.3 1.5 27 102-128 4-30 (290)
372 4dhe_A Probable GTP-binding pr 95.8 0.0026 9E-08 56.9 1.7 24 104-127 30-53 (223)
373 2xtp_A GTPase IMAP family memb 95.8 0.0042 1.4E-07 57.6 3.2 24 104-127 23-46 (260)
374 1mh1_A RAC1; GTP-binding, GTPa 95.8 0.0042 1.4E-07 53.4 2.9 22 105-126 7-28 (186)
375 1zd9_A ADP-ribosylation factor 95.8 0.007 2.4E-07 52.9 4.3 24 105-128 24-47 (188)
376 1gwn_A RHO-related GTP-binding 95.8 0.0077 2.6E-07 53.9 4.6 24 105-128 30-53 (205)
377 2cjw_A GTP-binding protein GEM 95.8 0.0045 1.5E-07 54.8 2.9 22 105-126 8-29 (192)
378 2xb4_A Adenylate kinase; ATP-b 95.8 0.0051 1.7E-07 56.1 3.4 23 105-127 2-24 (223)
379 2atv_A RERG, RAS-like estrogen 95.8 0.0096 3.3E-07 52.2 5.1 23 105-127 30-52 (196)
380 3c5c_A RAS-like protein 12; GD 95.7 0.0099 3.4E-07 52.0 5.1 23 105-127 23-45 (187)
381 2f6r_A COA synthase, bifunctio 95.7 0.0047 1.6E-07 58.7 3.1 23 103-125 75-97 (281)
382 2dby_A GTP-binding protein; GD 95.7 0.0044 1.5E-07 61.6 3.0 23 105-127 3-25 (368)
383 2wsm_A Hydrogenase expression/ 95.7 0.0048 1.6E-07 55.3 3.0 25 104-128 31-55 (221)
384 2il1_A RAB12; G-protein, GDP, 95.7 0.0045 1.5E-07 54.4 2.7 23 105-127 28-50 (192)
385 4bas_A ADP-ribosylation factor 95.7 0.0048 1.6E-07 53.9 2.8 34 104-137 18-52 (199)
386 3dz8_A RAS-related protein RAB 95.7 0.0045 1.5E-07 54.2 2.7 23 105-127 25-47 (191)
387 3a1s_A Iron(II) transport prot 95.7 0.0055 1.9E-07 57.5 3.4 24 105-128 7-30 (258)
388 3i8s_A Ferrous iron transport 95.7 0.0052 1.8E-07 58.1 3.1 23 105-127 5-27 (274)
389 2h57_A ADP-ribosylation factor 95.7 0.0038 1.3E-07 54.5 2.0 24 104-127 22-45 (190)
390 1zj6_A ADP-ribosylation factor 95.7 0.0051 1.7E-07 53.5 2.8 24 103-126 16-39 (187)
391 2iwr_A Centaurin gamma 1; ANK 95.7 0.0043 1.5E-07 53.2 2.4 23 105-127 9-31 (178)
392 3bgw_A DNAB-like replicative h 95.7 0.012 4.1E-07 59.8 6.0 35 93-127 187-221 (444)
393 2qu8_A Putative nucleolar GTP- 95.7 0.0055 1.9E-07 55.5 3.2 23 104-126 30-52 (228)
394 2o52_A RAS-related protein RAB 95.7 0.0051 1.8E-07 54.5 2.9 23 105-127 27-49 (200)
395 3bwd_D RAC-like GTP-binding pr 95.6 0.0068 2.3E-07 52.0 3.6 23 104-126 9-31 (182)
396 2p5s_A RAS and EF-hand domain 95.6 0.0055 1.9E-07 54.0 3.0 25 103-127 28-52 (199)
397 2h17_A ADP-ribosylation factor 95.6 0.0047 1.6E-07 53.6 2.4 22 105-126 23-44 (181)
398 2f7s_A C25KG, RAS-related prot 95.6 0.0062 2.1E-07 54.3 3.2 23 105-127 27-49 (217)
399 3be4_A Adenylate kinase; malar 95.6 0.0061 2.1E-07 55.2 3.2 27 102-128 4-30 (217)
400 1jwy_B Dynamin A GTPase domain 95.6 0.0057 1.9E-07 58.2 3.1 23 105-127 26-48 (315)
401 3cpj_B GTP-binding protein YPT 95.6 0.016 5.4E-07 52.2 5.9 24 105-128 15-38 (223)
402 3h4m_A Proteasome-activating n 95.6 0.0066 2.3E-07 56.8 3.5 28 101-128 49-76 (285)
403 1l8q_A Chromosomal replication 95.6 0.0042 1.4E-07 59.6 2.1 26 103-128 37-62 (324)
404 2p65_A Hypothetical protein PF 95.5 0.0067 2.3E-07 52.0 3.2 27 102-128 42-68 (187)
405 2q3h_A RAS homolog gene family 95.5 0.0066 2.2E-07 53.4 3.1 25 103-127 20-44 (201)
406 2gco_A H9, RHO-related GTP-bin 95.5 0.009 3.1E-07 52.8 4.0 24 105-128 27-50 (201)
407 1sky_E F1-ATPase, F1-ATP synth 95.5 0.0043 1.5E-07 63.7 2.1 35 93-128 142-176 (473)
408 2fv8_A H6, RHO-related GTP-bin 95.5 0.0057 2E-07 54.4 2.7 24 105-128 27-50 (207)
409 1e4v_A Adenylate kinase; trans 95.5 0.0064 2.2E-07 54.8 3.0 23 105-127 2-24 (214)
410 4edh_A DTMP kinase, thymidylat 95.5 0.0077 2.6E-07 55.1 3.6 28 101-128 4-31 (213)
411 1ltq_A Polynucleotide kinase; 95.5 0.007 2.4E-07 57.3 3.4 22 104-125 3-24 (301)
412 1ak2_A Adenylate kinase isoenz 95.5 0.0088 3E-07 54.7 3.9 28 101-128 14-41 (233)
413 2j1l_A RHO-related GTP-binding 95.5 0.0066 2.2E-07 54.5 2.9 22 105-126 36-57 (214)
414 2h92_A Cytidylate kinase; ross 95.5 0.0062 2.1E-07 54.7 2.7 26 103-128 3-28 (219)
415 3llu_A RAS-related GTP-binding 95.4 0.0067 2.3E-07 53.4 2.9 24 105-128 22-45 (196)
416 3cnl_A YLQF, putative uncharac 95.4 0.0077 2.6E-07 56.9 3.4 25 104-128 100-124 (262)
417 2fu5_C RAS-related protein RAB 95.4 0.0044 1.5E-07 53.4 1.6 22 105-126 10-31 (183)
418 2fh5_B SR-beta, signal recogni 95.4 0.0075 2.6E-07 53.6 3.2 23 105-127 9-31 (214)
419 2atx_A Small GTP binding prote 95.4 0.011 3.7E-07 51.6 4.1 23 105-127 20-42 (194)
420 3v9p_A DTMP kinase, thymidylat 95.4 0.0068 2.3E-07 56.2 2.8 28 101-128 23-50 (227)
421 1h65_A Chloroplast outer envel 95.4 0.0075 2.6E-07 56.5 3.1 23 105-127 41-63 (270)
422 3zvl_A Bifunctional polynucleo 95.4 0.0084 2.9E-07 60.3 3.6 26 101-126 256-281 (416)
423 3lv8_A DTMP kinase, thymidylat 95.3 0.0088 3E-07 55.8 3.4 27 102-128 26-52 (236)
424 2b6h_A ADP-ribosylation factor 95.3 0.0066 2.3E-07 53.5 2.5 24 102-125 28-51 (192)
425 2qz4_A Paraplegin; AAA+, SPG7, 95.3 0.0093 3.2E-07 54.8 3.5 26 103-128 39-64 (262)
426 3def_A T7I23.11 protein; chlor 95.3 0.0081 2.8E-07 56.1 3.1 23 105-127 38-60 (262)
427 2aka_B Dynamin-1; fusion prote 95.3 0.0075 2.6E-07 56.7 2.9 23 105-127 28-50 (299)
428 4tmk_A Protein (thymidylate ki 95.3 0.0097 3.3E-07 54.6 3.5 27 102-128 2-28 (213)
429 1njg_A DNA polymerase III subu 95.3 0.011 3.9E-07 52.3 3.8 24 105-128 47-70 (250)
430 2hf9_A Probable hydrogenase ni 95.3 0.0083 2.8E-07 53.9 2.9 25 104-128 39-63 (226)
431 3d3q_A TRNA delta(2)-isopenten 95.2 0.0092 3.1E-07 58.8 3.3 25 104-128 8-32 (340)
432 3q3j_B RHO-related GTP-binding 95.2 0.015 5E-07 52.3 4.4 23 105-127 29-51 (214)
433 2r62_A Cell division protease 95.2 0.0027 9.1E-08 59.0 -0.6 28 99-128 42-69 (268)
434 2g3y_A GTP-binding protein GEM 95.2 0.0097 3.3E-07 54.1 3.2 22 105-126 39-60 (211)
435 3tmk_A Thymidylate kinase; pho 95.2 0.011 3.8E-07 54.4 3.6 28 101-128 3-30 (216)
436 3a8t_A Adenylate isopentenyltr 95.2 0.012 4.1E-07 57.9 4.0 28 101-128 38-65 (339)
437 4djt_A GTP-binding nuclear pro 95.2 0.0042 1.4E-07 55.5 0.6 23 105-127 13-35 (218)
438 4dcu_A GTP-binding protein ENG 95.2 0.0082 2.8E-07 60.9 2.9 23 105-127 25-47 (456)
439 4gzl_A RAS-related C3 botulinu 95.2 0.017 5.8E-07 51.3 4.6 23 104-126 31-53 (204)
440 2ocp_A DGK, deoxyguanosine kin 95.2 0.011 3.6E-07 54.4 3.3 27 102-128 1-27 (241)
441 1ypw_A Transitional endoplasmi 95.1 0.0033 1.1E-07 68.7 -0.3 33 96-128 504-536 (806)
442 2yc2_C IFT27, small RAB-relate 95.1 0.0042 1.5E-07 54.5 0.5 22 105-126 22-43 (208)
443 3ld9_A DTMP kinase, thymidylat 95.1 0.012 4.2E-07 54.4 3.7 28 101-128 19-46 (223)
444 2i1q_A DNA repair and recombin 95.1 0.011 3.8E-07 56.8 3.4 27 99-125 94-120 (322)
445 2hup_A RAS-related protein RAB 95.1 0.0095 3.3E-07 52.8 2.7 23 105-127 31-53 (201)
446 3exa_A TRNA delta(2)-isopenten 95.1 0.012 4.2E-07 57.4 3.6 26 103-128 3-28 (322)
447 2x77_A ADP-ribosylation factor 95.1 0.0063 2.2E-07 52.9 1.5 23 103-125 22-44 (189)
448 3cmu_A Protein RECA, recombina 95.1 0.13 4.5E-06 61.1 12.8 29 100-128 380-408 (2050)
449 2j0v_A RAC-like GTP-binding pr 95.1 0.015 5.2E-07 51.5 4.0 23 105-127 11-33 (212)
450 2qmh_A HPR kinase/phosphorylas 95.1 0.015 5E-07 53.3 3.9 33 93-126 25-57 (205)
451 3crm_A TRNA delta(2)-isopenten 95.0 0.013 4.4E-07 57.4 3.4 25 104-128 6-30 (323)
452 2v3c_C SRP54, signal recogniti 94.9 0.0043 1.5E-07 63.0 -0.1 25 104-128 100-124 (432)
453 2zts_A Putative uncharacterize 94.9 0.016 5.6E-07 52.4 3.9 25 99-123 26-50 (251)
454 1p5z_B DCK, deoxycytidine kina 94.9 0.0092 3.1E-07 55.6 2.2 28 101-128 22-49 (263)
455 3tqf_A HPR(Ser) kinase; transf 94.9 0.022 7.4E-07 51.1 4.4 32 93-125 7-38 (181)
456 3umf_A Adenylate kinase; rossm 94.8 0.017 5.8E-07 53.2 3.6 31 98-128 24-54 (217)
457 3n70_A Transport activator; si 94.7 0.018 6.2E-07 48.7 3.2 28 101-128 22-49 (145)
458 3dm5_A SRP54, signal recogniti 94.6 0.016 5.6E-07 59.0 3.3 27 102-128 99-125 (443)
459 3cmw_A Protein RECA, recombina 94.6 0.13 4.5E-06 60.2 11.1 29 100-128 380-408 (1706)
460 2chg_A Replication factor C sm 94.6 0.018 6E-07 50.5 3.1 24 105-128 40-63 (226)
461 1sxj_D Activator 1 41 kDa subu 94.5 0.016 5.6E-07 55.4 2.9 35 94-128 47-83 (353)
462 1puj_A YLQF, conserved hypothe 94.5 0.02 6.7E-07 54.6 3.4 26 103-128 120-145 (282)
463 3foz_A TRNA delta(2)-isopenten 94.5 0.022 7.5E-07 55.5 3.7 26 103-128 10-35 (316)
464 2v1u_A Cell division control p 94.5 0.016 5.4E-07 55.9 2.7 28 101-128 42-69 (387)
465 3gj0_A GTP-binding nuclear pro 94.4 0.013 4.4E-07 52.5 1.7 23 105-127 17-40 (221)
466 3syl_A Protein CBBX; photosynt 94.3 0.024 8.3E-07 53.4 3.6 27 102-128 66-92 (309)
467 3uk6_A RUVB-like 2; hexameric 94.3 0.027 9.2E-07 54.5 3.9 27 102-128 69-95 (368)
468 3th5_A RAS-related C3 botulinu 93.3 0.0078 2.7E-07 53.2 0.0 22 104-125 31-52 (204)
469 3sr0_A Adenylate kinase; phosp 94.2 0.026 8.8E-07 51.4 3.3 24 105-128 2-25 (206)
470 2hjg_A GTP-binding protein ENG 94.2 0.02 6.9E-07 57.6 2.9 23 105-127 5-27 (436)
471 4hlc_A DTMP kinase, thymidylat 94.2 0.028 9.5E-07 51.0 3.5 26 103-128 2-27 (205)
472 3r7w_A Gtpase1, GTP-binding pr 94.2 0.025 8.4E-07 54.3 3.3 24 103-126 3-26 (307)
473 3p32_A Probable GTPase RV1496/ 94.2 0.026 8.8E-07 55.3 3.5 26 103-128 79-104 (355)
474 1xwi_A SKD1 protein; VPS4B, AA 94.1 0.028 9.5E-07 54.4 3.5 26 102-127 44-69 (322)
475 3ec1_A YQEH GTPase; atnos1, at 94.0 0.024 8.2E-07 56.1 3.0 25 102-126 161-185 (369)
476 3eph_A TRNA isopentenyltransfe 94.0 0.027 9.4E-07 56.7 3.3 25 104-128 3-27 (409)
477 3l0i_B RAS-related protein RAB 94.0 0.0049 1.7E-07 54.4 -2.0 22 105-126 35-56 (199)
478 3hws_A ATP-dependent CLP prote 94.0 0.025 8.5E-07 55.2 2.9 26 103-128 51-76 (363)
479 1d2n_A N-ethylmaleimide-sensit 93.9 0.028 9.5E-07 52.4 3.1 24 105-128 66-89 (272)
480 3pvs_A Replication-associated 93.9 0.019 6.3E-07 58.5 2.0 33 96-128 41-75 (447)
481 2orw_A Thymidine kinase; TMTK, 93.9 0.033 1.1E-06 49.5 3.4 26 102-127 2-28 (184)
482 2x2e_A Dynamin-1; nitration, h 93.9 0.019 6.5E-07 56.1 1.9 23 105-127 33-55 (353)
483 1ofh_A ATP-dependent HSL prote 93.9 0.03 1E-06 52.4 3.3 26 103-128 50-75 (310)
484 1wxq_A GTP-binding protein; st 93.9 0.027 9.1E-07 56.5 2.9 23 105-127 2-24 (397)
485 3t15_A Ribulose bisphosphate c 93.8 0.032 1.1E-06 53.1 3.2 25 104-128 37-61 (293)
486 3eie_A Vacuolar protein sortin 93.8 0.037 1.2E-06 53.2 3.7 26 103-128 51-76 (322)
487 2qen_A Walker-type ATPase; unk 93.7 0.039 1.3E-06 52.3 3.6 23 103-125 31-53 (350)
488 3d8b_A Fidgetin-like protein 1 93.6 0.041 1.4E-06 53.8 3.8 28 101-128 115-142 (357)
489 3h2y_A GTPase family protein; 93.6 0.026 9E-07 55.8 2.4 26 102-127 159-184 (368)
490 2qby_B CDC6 homolog 3, cell di 93.6 0.038 1.3E-06 53.5 3.6 26 103-128 45-70 (384)
491 2qpt_A EH domain-containing pr 93.6 0.03 1E-06 58.5 2.9 24 104-127 66-89 (550)
492 2vhj_A Ntpase P4, P4; non- hyd 93.5 0.037 1.3E-06 54.2 3.2 28 98-125 118-145 (331)
493 2qgz_A Helicase loader, putati 93.5 0.044 1.5E-06 52.7 3.7 26 103-128 152-177 (308)
494 3geh_A MNME, tRNA modification 93.5 0.027 9.1E-07 57.6 2.2 26 102-127 223-248 (462)
495 1lnz_A SPO0B-associated GTP-bi 93.5 0.038 1.3E-06 54.2 3.3 31 96-126 151-181 (342)
496 3pfi_A Holliday junction ATP-d 93.4 0.038 1.3E-06 52.9 3.1 24 105-128 57-80 (338)
497 2bjv_A PSP operon transcriptio 93.4 0.058 2E-06 49.9 4.2 27 102-128 28-54 (265)
498 1f5n_A Interferon-induced guan 93.3 0.033 1.1E-06 58.7 2.7 25 103-127 38-62 (592)
499 1g8f_A Sulfate adenylyltransfe 93.3 0.04 1.4E-06 57.1 3.3 28 101-128 393-420 (511)
500 1m8p_A Sulfate adenylyltransfe 93.3 0.046 1.6E-06 57.4 3.7 28 101-128 394-421 (573)
No 1
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=7.7e-51 Score=407.33 Aligned_cols=216 Identities=16% Similarity=0.214 Sum_probs=180.3
Q ss_pred CCCeEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce--
Q 015952 68 IGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-- 144 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-- 144 (397)
.++||+++||+|+|+.+. .+.+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~a---L~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~-----p~~G~I~i~G~~i 92 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQA---LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER-----PTEGSVLVDGQEL 92 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEE---EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEC
T ss_pred CCceEEEEeEEEEeCCCCCCeEE---EEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC-----CCceEEEECCEEC
Confidence 457999999999996432 1233 999999999999999999999999999999999999 99999999997
Q ss_pred -----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHH
Q 015952 145 -----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRN 208 (397)
Q Consensus 145 -----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqk 208 (397)
+++||||||++++++ .+||+||+.++.. ...+.++++.++++.+||. ...++|.+||||||
T Consensus 93 ~~~~~~~~~~~r~~Ig~v~Q~~~l~~---~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqk 169 (366)
T 3tui_C 93 TTLSESELTKARRQIGMIFQHFNLLS---SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQK 169 (366)
T ss_dssp SSCCHHHHHHHHTTEEEECSSCCCCT---TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHH
T ss_pred CcCCHHHHHHHhCcEEEEeCCCccCC---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHH
Confidence 257999999999887 6899999998643 4556677899999999994 45778999999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
|||+|||||+.+|++| +||||| ++||+.... ..++.+.++. .+.|+|||+|||+ .+.++|
T Consensus 170 QRVaIArAL~~~P~lL--------LlDEPT--s~LD~~~~~--~i~~lL~~l~------~~~g~Tii~vTHdl~~~~~~a 231 (366)
T 3tui_C 170 QRVAIARALASNPKVL--------LCDQAT--SALDPATTR--SILELLKDIN------RRLGLTILLITHEMDVVKRIC 231 (366)
T ss_dssp HHHHHHHHTTTCCSEE--------EEESTT--TTSCHHHHH--HHHHHHHHHH------HHSCCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHHHhcCCCEE--------EEECCC--ccCCHHHHH--HHHHHHHHHH------HhCCCEEEEEecCHHHHHHhC
Confidence 9999999999999999 555556 777755443 3444444431 2459999999995 788999
Q ss_pred cEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
||| ++|++|++++.|++++++..|.+
T Consensus 232 Drv-~vl~~G~iv~~g~~~ev~~~p~~ 257 (366)
T 3tui_C 232 DCV-AVISNGELIEQDTVSEVFSHPKT 257 (366)
T ss_dssp SEE-EEEETTEEEECCBHHHHHSSCCS
T ss_pred CEE-EEEECCEEEEEcCHHHHHhCCCc
Confidence 999 56999999999999999988764
No 2
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=1e-50 Score=405.89 Aligned_cols=210 Identities=14% Similarity=0.188 Sum_probs=178.9
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
+|+++||+|+|+ +..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 4 ~l~i~~ls~~y~-~~~~-----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~i~~~~ 72 (359)
T 3fvq_A 4 ALHIGHLSKSFQ-NTPV-----LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ-----PDSGEISLSGKTIFSKN 72 (359)
T ss_dssp CEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEESSS
T ss_pred EEEEEeEEEEEC-CEEE-----EEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC-----CCCcEEEECCEECcccc
Confidence 799999999995 3334 999999999999999999999999999999999999 99999999996
Q ss_pred ------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHH
Q 015952 145 ------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 145 ------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaI 213 (397)
++.||||||++.+++ ++||+||+.|+.. ...+.++++.++++.++|. ...++|.+|||||||||+|
T Consensus 73 ~~~~~~~r~ig~vfQ~~~l~p---~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 73 TNLPVRERRLGYLVQEGVLFP---HLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp CBCCGGGSCCEEECTTCCCCT---TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHH
T ss_pred cccchhhCCEEEEeCCCcCCC---CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence 257999999999987 7999999999865 3456677899999999994 4577899999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| ++||+.... ..++.+.++. .+.|+|+|+|||| ++..+|||| +
T Consensus 150 ArAL~~~P~lL--------LLDEPt--s~LD~~~r~--~l~~~l~~~~------~~~g~tvi~vTHd~~ea~~~aDri-~ 210 (359)
T 3fvq_A 150 ARALAPDPELI--------LLDEPF--SALDEQLRR--QIREDMIAAL------RANGKSAVFVSHDREEALQYADRI-A 210 (359)
T ss_dssp HHHHTTCCSEE--------EEESTT--TTSCHHHHH--HHHHHHHHHH------HHTTCEEEEECCCHHHHHHHCSEE-E
T ss_pred HHHHHcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhCCCEEEEEeCCHHHHHHHCCEE-E
Confidence 99999999999 555555 777765544 2333343331 2469999999995 889999999 5
Q ss_pred EeeCCEEeeeCCcccccCCCCC
Q 015952 292 RTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~~~~~ 313 (397)
+|++|++++.|++++++..|..
T Consensus 211 vl~~G~i~~~g~~~el~~~p~~ 232 (359)
T 3fvq_A 211 VMKQGRILQTASPHELYRQPAD 232 (359)
T ss_dssp EEETTEEEEEECHHHHHHSCSC
T ss_pred EEECCEEEEEeCHHHHHhCccc
Confidence 6999999999999999988753
No 3
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=9.2e-51 Score=408.93 Aligned_cols=212 Identities=16% Similarity=0.214 Sum_probs=180.2
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|.+|+++||+|+|+ +..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 1 M~~l~~~~l~~~yg-~~~~-----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-----p~~G~I~i~G~~~~~ 69 (381)
T 3rlf_A 1 MASVQLQNVTKAWG-EVVV-----SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET-----ITSGDLFIGEKRMND 69 (381)
T ss_dssp -CCEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred CCEEEEEeEEEEEC-CEEE-----EeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC-----CCCeEEEECCEECCC
Confidence 45799999999995 3334 999999999999999999999999999999999999 99999999998
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
++.||||||++.+++ ++||+||+.|+.. ..++.++++.++++.+++. ...++|.+|||||||||+|||
T Consensus 70 ~~~~~r~ig~VfQ~~~l~p---~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 70 TPPAERGVGMVFQSYALYP---HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGR 146 (381)
T ss_dssp CCGGGSCEEEECTTCCCCT---TSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHH
T ss_pred CCHHHCCEEEEecCCcCCC---CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHH
Confidence 367999999999987 7999999999754 4556678899999999994 457789999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++| +||||| ++||+.... ..++.+.++. .+.|+|+|+|||| ++..+|||| ++|
T Consensus 147 AL~~~P~lL--------LLDEPt--s~LD~~~~~--~l~~~l~~l~------~~~g~tii~vTHd~~ea~~~aDri-~vl 207 (381)
T 3rlf_A 147 TLVAEPSVF--------LLDEPL--SNLDAALRV--QMRIEISRLH------KRLGRTMIYVTHDQVEAMTLADKI-VVL 207 (381)
T ss_dssp HHHHCCSEE--------EEESTT--TTSCHHHHH--HHHHHHHHHH------HHHCCEEEEECSCHHHHHHHCSEE-EEE
T ss_pred HHHcCCCEE--------EEECCC--cCCCHHHHH--HHHHHHHHHH------HhCCCEEEEEECCHHHHHHhCCEE-EEE
Confidence 999999999 555555 777755444 3445554431 2359999999995 889999999 569
Q ss_pred eCCEEeeeCCcccccCCCCC
Q 015952 294 YLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~~~~ 313 (397)
++|++++.|++++++..|.+
T Consensus 208 ~~G~i~~~g~~~~l~~~p~~ 227 (381)
T 3rlf_A 208 DAGRVAQVGKPLELYHYPAD 227 (381)
T ss_dssp ETTEEEEEECHHHHHHCCSB
T ss_pred ECCEEEEEeCHHHHHhCCcc
Confidence 99999999999999988753
No 4
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=4.4e-49 Score=372.82 Aligned_cols=208 Identities=18% Similarity=0.223 Sum_probs=167.6
Q ss_pred eEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 71 LTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
||+++||+|+|+.+. ...+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~---L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~~ 72 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYA---LKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK-----PTEGEVYIDNIKTNDL 72 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEE---EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTTC
T ss_pred CEEEEEEEEEeCCCCcceee---EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCceEEEECCEEcccC
Confidence 589999999996432 1123 999999999999999999999999999999999999 999999999962
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-------ChhhHHHHHHHHHHHCCCcc-c-ccCCCCCChH
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-------ASDNINMIKLWIMEGVRHGE-L-VIRRSDSSSL 206 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-------~~~~~~~~~~~ll~~vgl~~-~-~~~~~~lSGG 206 (397)
+.||||||++.+++ .+||+||+.++.. ...+..+++.++++.+++.+ . .+++.+||||
T Consensus 73 ~~~~~~~~~~~~i~~v~Q~~~l~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 149 (235)
T 3tif_A 73 DDDELTKIRRDKIGFVFQQFNLIP---LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGG 149 (235)
T ss_dssp CHHHHHHHHHHHEEEECTTCCCCT---TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHH
T ss_pred CHHHHHHHhhccEEEEecCCccCC---CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHH
Confidence 25999999998877 6899999987521 34455677889999999954 3 6778999999
Q ss_pred HHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHcc
Q 015952 207 RNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSL 285 (397)
Q Consensus 207 qkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~ 285 (397)
|||||+|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|||+|||+ .+..+
T Consensus 150 q~QRv~iAral~~~p~ll--------llDEPt--s~LD~~~~~--~i~~~l~~l~------~~~g~tvi~vtHd~~~~~~ 211 (235)
T 3tif_A 150 QQQRVAIARALANNPPII--------LADQPT--WALDSKTGE--KIMQLLKKLN------EEDGKTVVVVTHDINVARF 211 (235)
T ss_dssp HHHHHHHHHHHTTCCSEE--------EEESTT--TTSCHHHHH--HHHHHHHHHH------HHHCCEEEEECSCHHHHTT
T ss_pred HHHHHHHHHHHHcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HHcCCEEEEEcCCHHHHHh
Confidence 999999999999999999 555556 777755443 3444444431 2348999999996 56789
Q ss_pred ccEEEEEeeCCEEeeeCCccccc
Q 015952 286 TDRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 286 aDrI~v~l~~G~iv~~g~~~el~ 308 (397)
|||| ++|++|++++.++++++.
T Consensus 212 ~d~i-~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 212 GERI-IYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp SSEE-EEEETTEEEEEEECC---
T ss_pred CCEE-EEEECCEEEEEcChhhhc
Confidence 9999 579999999998887653
No 5
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=2.8e-49 Score=395.81 Aligned_cols=211 Identities=13% Similarity=0.194 Sum_probs=176.6
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|.+|+++||+|+|+ +..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 1 M~~l~~~~l~~~y~-~~~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~ 69 (359)
T 2yyz_A 1 MPSIRVVNLKKYFG-KVKA-----VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK-----PTSGEIYFDDVLVND 69 (359)
T ss_dssp -CCEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred CcEEEEEEEEEEEC-CEEE-----EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC-----CCccEEEECCEECCC
Confidence 34799999999995 3334 999999999999999999999999999999999999 99999999997
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
+++||||||++.+++ ++||+||+.|+.. ...+.++++.++++.+++. ...+++.+|||||||||+|||
T Consensus 70 ~~~~~r~ig~v~Q~~~l~~---~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 70 IPPKYREVGMVFQNYALYP---HMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALAR 146 (359)
T ss_dssp SCGGGTTEEEECSSCCCCT---TSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred CChhhCcEEEEecCcccCC---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHH
Confidence 357999999999887 7999999999764 1233456788999999994 457789999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++||| |||| ++||+.... ...+.+.++. .+.|+|+|+|||| ++..+|||| ++|
T Consensus 147 AL~~~P~lLLL--------DEP~--s~LD~~~r~--~l~~~l~~l~------~~~g~tvi~vTHd~~~~~~~adri-~vl 207 (359)
T 2yyz_A 147 ALVKQPKVLLF--------DEPL--SNLDANLRM--IMRAEIKHLQ------QELGITSVYVTHDQAEAMTMASRI-AVF 207 (359)
T ss_dssp HHTTCCSEEEE--------ESTT--TTSCHHHHH--HHHHHHHHHH------HHHCCEEEEEESCHHHHHHHCSEE-EEE
T ss_pred HHHcCCCEEEE--------ECCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEcCCHHHHHHhCCEE-EEE
Confidence 99999999955 5555 777755544 3444444431 2348999999995 788999999 569
Q ss_pred eCCEEeeeCCcccccCCCC
Q 015952 294 YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~~~ 312 (397)
++|++++.|++++++..|.
T Consensus 208 ~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 208 NQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp ETTEEEEEECHHHHHHSCS
T ss_pred ECCEEEEeCCHHHHHhCcc
Confidence 9999999999999998775
No 6
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=3.7e-49 Score=395.41 Aligned_cols=211 Identities=15% Similarity=0.213 Sum_probs=178.0
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|.+|+++||+|+|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 1 m~~l~~~~l~~~y~~-~~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~ 69 (362)
T 2it1_A 1 MVEIKLENIVKKFGN-FTA-----LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK-----PTSGKIYFDEKDVTE 69 (362)
T ss_dssp CCCEEEEEEEEESSS-SEE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred CcEEEEEeEEEEECC-EEE-----EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC-----CCceEEEECCEECCc
Confidence 347999999999953 335 999999999999999999999999999999999999 99999999997
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
++.||||||++.+++ ++||+||+.|+.. ..++.++++.++++.+++. ...+++.+|||||||||+|||
T Consensus 70 ~~~~~r~ig~v~Q~~~l~~---~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 70 LPPKDRNVGLVFQNWALYP---HMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp SCGGGTTEEEECTTCCCCT---TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHH
T ss_pred CCHhHCcEEEEecCcccCC---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHH
Confidence 357999999999887 7999999998743 3445567889999999994 457789999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|+|+|||| ++..+|||| ++|
T Consensus 147 AL~~~P~lL--------LLDEP~--s~LD~~~r~--~l~~~l~~l~------~~~g~tvi~vTHd~~~a~~~adri-~vl 207 (362)
T 2it1_A 147 ALVKEPEVL--------LLDEPL--SNLDALLRL--EVRAELKRLQ------KELGITTVYVTHDQAEALAMADRI-AVI 207 (362)
T ss_dssp HHTTCCSEE--------EEESGG--GGSCHHHHH--HHHHHHHHHH------HHHTCEEEEEESCHHHHHHHCSEE-EEE
T ss_pred HHHcCCCEE--------EEECcc--ccCCHHHHH--HHHHHHHHHH------HhCCCEEEEECCCHHHHHHhCCEE-EEE
Confidence 999999999 555555 777765544 3444444431 2348999999995 788999999 569
Q ss_pred eCCEEeeeCCcccccCCCC
Q 015952 294 YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~~~ 312 (397)
++|++++.|++++++..|.
T Consensus 208 ~~G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 208 REGEILQVGTPDEVYYKPK 226 (362)
T ss_dssp ETTEEEEEECHHHHHHSCS
T ss_pred ECCEEEEEcCHHHHHhCcc
Confidence 9999999999999998775
No 7
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=4.4e-49 Score=381.44 Aligned_cols=208 Identities=13% Similarity=0.152 Sum_probs=172.6
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++|+++||+|+|+++..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 6 ~~l~i~~ls~~y~~~~~~-----L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~-----p~~G~I~~~G~~i~~~ 75 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHA-----LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK-----PSSGRILFDNKPIDYS 75 (275)
T ss_dssp EEEEEEEEEEECTTSCEE-----EEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCCS
T ss_pred cEEEEEEEEEEECCCCeE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC-----CCCeEEEECCEECCcc
Confidence 489999999999654434 999999999999999999999999999999999999 999999999972
Q ss_pred --------CcEEEEecCCC--CCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHH
Q 015952 146 --------GDGTYFLQEYT--IPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRM 210 (397)
Q Consensus 146 --------~~ig~v~Q~~~--l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQR 210 (397)
+.||||||++. ++ .+||+||+.++.. ..++.++++.++++.+++.+ ..+++.+||||||||
T Consensus 76 ~~~~~~~~~~ig~v~Q~~~~~~~----~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQR 151 (275)
T 3gfo_A 76 RKGIMKLRESIGIVFQDPDNQLF----SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKR 151 (275)
T ss_dssp HHHHHHHHHSEEEECSSGGGTCC----SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHH
T ss_pred cccHHHHhCcEEEEEcCcccccc----cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHH
Confidence 36999999973 33 4799999988643 34556778899999999954 567789999999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDR 288 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDr 288 (397)
|+|||||+.+|++| +||||| ++||+.... ...+.+.++ ..++|+|||+|||+ .+..+|||
T Consensus 152 v~iAraL~~~P~lL--------lLDEPt--s~LD~~~~~--~i~~~l~~l------~~~~g~tvi~vtHdl~~~~~~~dr 213 (275)
T 3gfo_A 152 VAIAGVLVMEPKVL--------ILDEPT--AGLDPMGVS--EIMKLLVEM------QKELGITIIIATHDIDIVPLYCDN 213 (275)
T ss_dssp HHHHHHHTTCCSEE--------EEECTT--TTCCHHHHH--HHHHHHHHH------HHHHCCEEEEEESCCSSGGGGCSE
T ss_pred HHHHHHHHcCCCEE--------EEECcc--ccCCHHHHH--HHHHHHHHH------HhhCCCEEEEEecCHHHHHHhCCE
Confidence 99999999999999 555556 777755443 334444443 11248999999995 78899999
Q ss_pred EEEEeeCCEEeeeCCcccccCC
Q 015952 289 ARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 289 I~v~l~~G~iv~~g~~~el~~~ 310 (397)
| ++|++|++++.|++++++..
T Consensus 214 v-~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 214 V-FVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp E-EEEETTEEEEEECHHHHTHH
T ss_pred E-EEEECCEEEEECCHHHHhcC
Confidence 9 57999999999999998754
No 8
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=5.7e-49 Score=395.33 Aligned_cols=211 Identities=17% Similarity=0.234 Sum_probs=173.1
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
|.+|+++||+|+|+ +..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 9 M~~l~~~~l~~~y~-~~~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~~ 77 (372)
T 1v43_A 9 MVEVKLENLTKRFG-NFTA-----VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE-----PTEGRIYFGDRDVTY 77 (372)
T ss_dssp CCCEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTT
T ss_pred eeeEEEEEEEEEEC-CEEE-----EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC-----CCceEEEECCEECCC
Confidence 55799999999995 3334 999999999999999999999999999999999999 99999999997
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
+++||||||++.+++ ++||+||+.|+.. ..++.++++.++++.+++. ...+++.+|||||||||+|||
T Consensus 78 ~~~~~r~ig~v~Q~~~l~~---~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 78 LPPKDRNISMVFQSYAVWP---HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVAR 154 (372)
T ss_dssp SCGGGGTEEEEEC---------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHH
T ss_pred CChhhCcEEEEecCcccCC---CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHH
Confidence 257999999999887 7999999999864 3345567889999999994 457789999999999999999
Q ss_pred HHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEe
Q 015952 216 KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRT 293 (397)
Q Consensus 216 AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l 293 (397)
||+.+|++||| |||| ++||+.... ..++.+.++. .+.|+|+|+|||| ++..+|||| ++|
T Consensus 155 AL~~~P~lLLL--------DEP~--s~LD~~~r~--~l~~~l~~l~------~~~g~tvi~vTHd~~~a~~~adri-~vl 215 (372)
T 1v43_A 155 AIVVEPDVLLM--------DEPL--SNLDAKLRV--AMRAEIKKLQ------QKLKVTTIYVTHDQVEAMTMGDRI-AVM 215 (372)
T ss_dssp HHTTCCSEEEE--------ESTT--TTSCHHHHH--HHHHHHHHHH------HHHTCEEEEEESCHHHHHHHCSEE-EEE
T ss_pred HHhcCCCEEEE--------cCCC--ccCCHHHHH--HHHHHHHHHH------HhCCCEEEEEeCCHHHHHHhCCEE-EEE
Confidence 99999999955 5555 777755544 3444444431 2348999999995 888999999 569
Q ss_pred eCCEEeeeCCcccccCCCC
Q 015952 294 YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 294 ~~G~iv~~g~~~el~~~~~ 312 (397)
++|++++.|++++++..|.
T Consensus 216 ~~G~i~~~g~~~~l~~~p~ 234 (372)
T 1v43_A 216 NRGQLLQIGSPTEVYLRPN 234 (372)
T ss_dssp ETTEEEEEECHHHHHHCCS
T ss_pred ECCEEEEeCCHHHHHhCcc
Confidence 9999999999999998775
No 9
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1e-48 Score=391.25 Aligned_cols=211 Identities=13% Similarity=0.194 Sum_probs=178.4
Q ss_pred CCeEEEEeEEEEECCCce--EeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce--
Q 015952 69 GSLTDAKNKILSYTPGAW--IENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~--v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-- 144 (397)
|.+|+++||+|+|++ .. + |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 1 M~~l~i~~l~~~y~~-~~~~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i 69 (353)
T 1oxx_K 1 MVRIIVKNVSKVFKK-GKVVA-----LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV-----PSTGELYFDDRLV 69 (353)
T ss_dssp CCCEEEEEEEEEEGG-GTEEE-----EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC-----CSEEEEEETTEEE
T ss_pred CcEEEEEeEEEEECC-Eeeee-----EeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCceEEEECCEEC
Confidence 357999999999953 33 4 999999999999999999999999999999999999 99999999995
Q ss_pred -----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHH
Q 015952 145 -----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRN 208 (397)
Q Consensus 145 -----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqk 208 (397)
+++||||||++.+++ ++||+||+.|+.. ..++.++++.++++.+++.+ ..+++.+||||||
T Consensus 70 ~~~~~~~~~~~~r~ig~v~Q~~~l~~---~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~ 146 (353)
T 1oxx_K 70 ASNGKLIVPPEDRKIGMVFQTWALYP---NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQ 146 (353)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCT---TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHH
T ss_pred cccccccCChhhCCEEEEeCCCccCC---CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHH
Confidence 246999999999887 7999999999754 23455678899999999954 5777899999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
|||+|||||+.+|++| +||||| ++||+.... ...+.+.++. .+.|+|+|+|||| ++..+|
T Consensus 147 QRvalAraL~~~P~lL--------LLDEP~--s~LD~~~r~--~l~~~l~~l~------~~~g~tvi~vTHd~~~~~~~a 208 (353)
T 1oxx_K 147 QRVALARALVKDPSLL--------LLDEPF--SNLDARMRD--SARALVKEVQ------SRLGVTLLVVSHDPADIFAIA 208 (353)
T ss_dssp HHHHHHHHHTTCCSEE--------EEESTT--TTSCGGGHH--HHHHHHHHHH------HHHCCEEEEEESCHHHHHHHC
T ss_pred HHHHHHHHHHhCCCEE--------EEECCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999 555555 778866655 3444554431 2348999999995 888999
Q ss_pred cEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
||| ++|++|++++.|++++++..|.
T Consensus 209 dri-~vl~~G~i~~~g~~~~l~~~p~ 233 (353)
T 1oxx_K 209 DRV-GVLVKGKLVQVGKPEDLYDNPV 233 (353)
T ss_dssp SEE-EEEETTEEEEEECHHHHHHSCS
T ss_pred CEE-EEEECCEEEEEcCHHHHHhCcc
Confidence 999 5699999999999999998775
No 10
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=6.9e-49 Score=392.40 Aligned_cols=211 Identities=16% Similarity=0.190 Sum_probs=177.9
Q ss_pred CCeEEEEeEEEEE-CCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 69 GSLTDAKNKILSY-TPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y-~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
.++|+++||+|+| ++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 12 ~~~l~~~~l~~~y~g~-~~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~i~ 80 (355)
T 1z47_A 12 SMTIEFVGVEKIYPGG-ARS-----VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER-----PTKGDVWIGGKRVT 80 (355)
T ss_dssp CEEEEEEEEEECCTTS-TTC-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECT
T ss_pred CceEEEEEEEEEEcCC-CEE-----EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCccEEEECCEECC
Confidence 4689999999999 53 334 999999999999999999999999999999999999 99999999997
Q ss_pred -----eCcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHH
Q 015952 145 -----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKA 214 (397)
Q Consensus 145 -----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIA 214 (397)
++.||||||++.+++ ++||+||+.|+.. ...+.++++.++++.+++. ...+++.+|||||||||+||
T Consensus 81 ~~~~~~r~ig~v~Q~~~l~~---~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 81 DLPPQKRNVGLVFQNYALFQ---HMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp TCCGGGSSEEEECGGGCCCT---TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred cCChhhCcEEEEecCcccCC---CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHH
Confidence 357999999999887 7999999998743 3445567889999999995 45778999999999999999
Q ss_pred HHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEE
Q 015952 215 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIR 292 (397)
Q Consensus 215 rAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~ 292 (397)
|||+.+|++||| |||| ++||+.... ...+.+.++. .+.|+|+|+|||| ++..+|||| ++
T Consensus 158 rAL~~~P~lLLL--------DEP~--s~LD~~~r~--~l~~~l~~l~------~~~g~tvi~vTHd~~~a~~~adri-~v 218 (355)
T 1z47_A 158 RALAPRPQVLLF--------DEPF--AAIDTQIRR--ELRTFVRQVH------DEMGVTSVFVTHDQEEALEVADRV-LV 218 (355)
T ss_dssp HHHTTCCSEEEE--------ESTT--CCSSHHHHH--HHHHHHHHHH------HHHTCEEEEECSCHHHHHHHCSEE-EE
T ss_pred HHHHcCCCEEEE--------eCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEECCCHHHHHHhCCEE-EE
Confidence 999999999955 5555 777755444 3444444431 2348999999995 888999999 56
Q ss_pred eeCCEEeeeCCcccccCCCC
Q 015952 293 TYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 293 l~~G~iv~~g~~~el~~~~~ 312 (397)
|++|++++.|++++++..|.
T Consensus 219 l~~G~i~~~g~~~~l~~~p~ 238 (355)
T 1z47_A 219 LHEGNVEQFGTPEEVYEKPG 238 (355)
T ss_dssp EETTEEEEEECHHHHHHSCS
T ss_pred EECCEEEEEcCHHHHHhCcc
Confidence 99999999999999998775
No 11
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.3e-48 Score=392.77 Aligned_cols=210 Identities=16% Similarity=0.204 Sum_probs=176.6
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
.+|+++||+|+|+ +..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 2 ~~l~~~~l~~~y~-~~~v-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~i~g~~~~~~ 70 (372)
T 1g29_1 2 AGVRLVDVWKVFG-EVTA-----VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE-----PSRGQIYIGDKLVADP 70 (372)
T ss_dssp EEEEEEEEEEEET-TEEE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC-----CSEEEEEETTEEEEEG
T ss_pred CEEEEEeEEEEEC-CEEE-----EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC-----CCccEEEECCEECccc
Confidence 4799999999995 3334 999999999999999999999999999999999999 999999999952
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHH
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRM 210 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQR 210 (397)
++||||||++.+++ ++||+||+.|+.. ...+.++++.++++.+++. ...+++.+||||||||
T Consensus 71 ~~~~~~~~~~r~ig~v~Q~~~l~~---~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QR 147 (372)
T 1g29_1 71 EKGIFVPPKDRDIAMVFQSYALYP---HMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQR 147 (372)
T ss_dssp GGTEECCGGGSSEEEECSCCCCCT---TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHH
T ss_pred cccccCCHhHCCEEEEeCCCccCC---CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHH
Confidence 46999999999887 7999999998743 3445567889999999994 4577889999999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDR 288 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDr 288 (397)
|+|||||+.+|++||| |||| ++||+.... ...+.+.++. .+.|+|+|+|||| ++..+|||
T Consensus 148 valArAL~~~P~lLLL--------DEP~--s~LD~~~r~--~l~~~l~~l~------~~~g~tvi~vTHd~~~a~~~adr 209 (372)
T 1g29_1 148 VALGRAIVRKPQVFLM--------DEPL--SNLDAKLRV--RMRAELKKLQ------RQLGVTTIYVTHDQVEAMTMGDR 209 (372)
T ss_dssp HHHHHHHHTCCSEEEE--------ECTT--TTSCHHHHH--HHHHHHHHHH------HHHTCEEEEEESCHHHHHHHCSE
T ss_pred HHHHHHHhcCCCEEEE--------CCCC--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEECCCHHHHHHhCCE
Confidence 9999999999999955 5555 777755544 3444444431 2348999999995 88899999
Q ss_pred EEEEeeCCEEeeeCCcccccCCCC
Q 015952 289 ARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 289 I~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
| ++|++|++++.|++++++..|.
T Consensus 210 i-~vl~~G~i~~~g~~~~l~~~p~ 232 (372)
T 1g29_1 210 I-AVMNRGVLQQVGSPDEVYDKPA 232 (372)
T ss_dssp E-EEEETTEEEEEECHHHHHHSCS
T ss_pred E-EEEeCCEEEEeCCHHHHHhCcc
Confidence 9 5699999999999999998775
No 12
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=2.1e-48 Score=388.10 Aligned_cols=208 Identities=12% Similarity=0.180 Sum_probs=174.5
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
||+++||+|+|++ . + |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 1 ml~~~~l~~~y~~-~-~-----l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~-----p~~G~I~~~g~~i~~~~ 68 (348)
T 3d31_A 1 MIEIESLSRKWKN-F-S-----LDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV-----PDSGRILLDGKDVTDLS 68 (348)
T ss_dssp CEEEEEEEEECSS-C-E-----EEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC-----CSEEEEEETTEECTTSC
T ss_pred CEEEEEEEEEECC-E-E-----EeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC-----CCCcEEEECCEECCCCc
Confidence 5899999999953 3 5 999999999999999999999999999999999999 999999999972
Q ss_pred ---CcEEEEecCCCCCCCCCCccHHHHHhcCCCC--hhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcC
Q 015952 146 ---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--SDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGC 219 (397)
Q Consensus 146 ---~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~ 219 (397)
++||||||++.+++ ++||+||+.|+... .... +++.++++.+++. ...+++.+|||||||||+|||||+.
T Consensus 69 ~~~r~ig~v~Q~~~l~~---~ltv~enl~~~~~~~~~~~~-~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 69 PEKHDIAFVYQNYSLFP---HMNVKKNLEFGMRMKKIKDP-KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp HHHHTCEEECTTCCCCT---TSCHHHHHHHHHHHHCCCCH-HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTS
T ss_pred hhhCcEEEEecCcccCC---CCCHHHHHHHHHHHcCCCHH-HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 47999999999887 79999999987531 1111 6788999999994 4577899999999999999999999
Q ss_pred CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCE
Q 015952 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGE 297 (397)
Q Consensus 220 ~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~ 297 (397)
+|++|||||| | ++||+.... ...+.+.++. .+.|+|+|+|||| ++..+|||| ++|++|+
T Consensus 145 ~P~lLLLDEP--------~--s~LD~~~~~--~l~~~l~~l~------~~~g~tii~vTHd~~~~~~~adri-~vl~~G~ 205 (348)
T 3d31_A 145 NPKILLLDEP--------L--SALDPRTQE--NAREMLSVLH------KKNKLTVLHITHDQTEARIMADRI-AVVMDGK 205 (348)
T ss_dssp CCSEEEEESS--------S--TTSCHHHHH--HHHHHHHHHH------HHTTCEEEEEESCHHHHHHHCSEE-EEESSSC
T ss_pred CCCEEEEECc--------c--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE-EEEECCE
Confidence 9999955555 5 777755444 3444444431 2358999999995 788999999 5699999
Q ss_pred EeeeCCcccccCCCCC
Q 015952 298 LLGIPPAKQIFDIPES 313 (397)
Q Consensus 298 iv~~g~~~el~~~~~~ 313 (397)
+++.|++++++..|..
T Consensus 206 i~~~g~~~~~~~~p~~ 221 (348)
T 3d31_A 206 LIQVGKPEEIFEKPVE 221 (348)
T ss_dssp EEEEECHHHHHSSCCT
T ss_pred EEEECCHHHHHhCccc
Confidence 9999999999988764
No 13
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=5.1e-48 Score=372.12 Aligned_cols=208 Identities=12% Similarity=0.104 Sum_probs=172.9
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
+++|+++||+++|+ +..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 9 ~~~l~~~~l~~~~~-~~~v-----L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~~~~~ 77 (266)
T 4g1u_C 9 VALLEASHLHYHVQ-QQAL-----INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS-----PSHGECHLLGQNLNS 77 (266)
T ss_dssp CCEEEEEEEEEEET-TEEE-----EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC-----CSSCEEEETTEETTT
T ss_pred cceEEEEeEEEEeC-CeeE-----EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECCEECCc
Confidence 46899999999996 3335 999999999999999999999999999999999999 999999999972
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC--ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIAr 215 (397)
+.+||+||++.++. .+||+||+.++.. .....++++.++++.+++. ...+++.+|||||||||+|||
T Consensus 78 ~~~~~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAr 154 (266)
T 4g1u_C 78 WQPKALARTRAVMRQYSELAF---PFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLAR 154 (266)
T ss_dssp SCHHHHHHHEEEECSCCCCCS---CCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHH
T ss_pred CCHHHHhheEEEEecCCccCC---CCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHH
Confidence 45999999988765 6899999998754 3344567788999999994 456678899999999999999
Q ss_pred HHcC------CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc
Q 015952 216 KIGC------EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD 287 (397)
Q Consensus 216 AL~~------~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD 287 (397)
||+. +|++| +||||| ++||+.... ...+.+.++. .+.|+|||+|||| ++..+||
T Consensus 155 aL~~~~~~~~~p~lL--------llDEPt--s~LD~~~~~--~i~~~l~~l~------~~~~~tvi~vtHdl~~~~~~~d 216 (266)
T 4g1u_C 155 VLAQLWQPQPTPRWL--------FLDEPT--SALDLYHQQ--HTLRLLRQLT------RQEPLAVCCVLHDLNLAALYAD 216 (266)
T ss_dssp HHHHTCCSSCCCEEE--------EECCCC--SSCCHHHHH--HHHHHHHHHH------HHSSEEEEEECSCHHHHHHHCS
T ss_pred HHhcccccCCCCCEE--------EEeCcc--ccCCHHHHH--HHHHHHHHHH------HcCCCEEEEEEcCHHHHHHhCC
Confidence 9999 99999 555555 677755443 3444444431 2356899999995 7888999
Q ss_pred EEEEEeeCCEEeeeCCcccccC
Q 015952 288 RARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~~ 309 (397)
|| ++|++|++++.|++++++.
T Consensus 217 ~v-~vl~~G~i~~~g~~~~~~~ 237 (266)
T 4g1u_C 217 RI-MLLAQGKLVACGTPEEVLN 237 (266)
T ss_dssp EE-EEEETTEEEEEECHHHHCC
T ss_pred EE-EEEECCEEEEEcCHHHHhC
Confidence 99 5799999999999998864
No 14
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=7.2e-48 Score=370.16 Aligned_cols=209 Identities=16% Similarity=0.165 Sum_probs=173.2
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++|+++||+++|+ +..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 5 ~~l~i~~l~~~y~-~~~v-----l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~~ 73 (262)
T 1b0u_A 5 NKLHVIDLHKRYG-GHEV-----LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK-----PSEGAIIVNGQNINLV 73 (262)
T ss_dssp CCEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECCEE
T ss_pred ceEEEeeEEEEEC-CEEE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEcccc
Confidence 4799999999995 3334 999999999999999999999999999999999999 999999999952
Q ss_pred -------------------CcEEEEecCCCCCCCCCCccHHHHHhcCC---C--ChhhHHHHHHHHHHHCCCcc--cccC
Q 015952 146 -------------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSD---D--ASDNINMIKLWIMEGVRHGE--LVIR 199 (397)
Q Consensus 146 -------------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~---~--~~~~~~~~~~~ll~~vgl~~--~~~~ 199 (397)
+.+|||||++.+++ .+||+||+.++. . ...+.++++.++++.+++.+ ..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~---~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~ 150 (262)
T 1b0u_A 74 RDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWS---HMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY 150 (262)
T ss_dssp ECTTSSEEESCHHHHHHHHHHEEEECSSCCCCT---TSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC
T ss_pred ccccccccccChhhHHHHhcceEEEecCcccCC---CCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCC
Confidence 24999999988876 689999998842 1 23445567889999999954 5778
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec
Q 015952 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 200 ~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH 279 (397)
+.+|||||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||+|||
T Consensus 151 ~~~LSgGq~qRv~lAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~~~~~l~~l-------~~~g~tvi~vtH 211 (262)
T 1b0u_A 151 PVHLSGGQQQRVSIARALAMEPDVL--------LFDEPT--SALDPELVG--EVLRIMQQL-------AEEGKTMVVVTH 211 (262)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEE--------EEESTT--TTSCHHHHH--HHHHHHHHH-------HHTTCCEEEECS
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeC
Confidence 8999999999999999999999999 555556 777755443 344444443 134899999999
Q ss_pred h--hHHccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 280 G--DLLSLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 280 ~--~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
+ .+..+|||| ++|++|++++.|++++++..+.
T Consensus 212 d~~~~~~~~d~v-~~l~~G~i~~~g~~~~~~~~~~ 245 (262)
T 1b0u_A 212 EMGFARHVSSHV-IFLHQGKIEEEGDPEQVFGNPQ 245 (262)
T ss_dssp CHHHHHHHCSEE-EEEETTEEEEEECHHHHHHSCC
T ss_pred CHHHHHHhCCEE-EEEECCEEEEeCCHHHHHhCcc
Confidence 5 778899999 5799999999999999886654
No 15
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.2e-47 Score=369.00 Aligned_cols=209 Identities=14% Similarity=0.222 Sum_probs=173.1
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++|+++||+++|+ +..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 23 ~~l~i~~l~~~y~-~~~v-----L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i~~~ 91 (263)
T 2olj_A 23 QMIDVHQLKKSFG-SLEV-----LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED-----FDEGEIIIDGINLKAK 91 (263)
T ss_dssp CSEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEESSST
T ss_pred heEEEEeEEEEEC-CEEE-----EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCEECCCc
Confidence 4799999999995 3335 999999999999999999999999999999999999 999999999963
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCC---C--ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHH
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSD---D--ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMR 211 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~---~--~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRv 211 (397)
+.||||||++.+++ .+||+||+.++. . ...+.++++.++++.+++. ...+++.+|||||||||
T Consensus 92 ~~~~~~~~~~i~~v~Q~~~l~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv 168 (263)
T 2olj_A 92 DTNLNKVREEVGMVFQRFNLFP---HMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRV 168 (263)
T ss_dssp TCCHHHHHHHEEEECSSCCCCT---TSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHH
T ss_pred cccHHHHhCcEEEEeCCCcCCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHH
Confidence 35999999988876 689999998842 1 2334456788999999994 45677889999999999
Q ss_pred HHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 212 CKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 212 aIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||+|||+ .+.++|||+
T Consensus 169 ~lAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~~~~~l~~l-------~~~g~tvi~vtHd~~~~~~~~d~v 229 (263)
T 2olj_A 169 AIARALAMEPKIM--------LFDEPT--SALDPEMVG--EVLSVMKQL-------ANEGMTMVVVTHEMGFAREVGDRV 229 (263)
T ss_dssp HHHHHHTTCCSEE--------EEESTT--TTSCHHHHH--HHHHHHHHH-------HHTTCEEEEECSCHHHHHHHCSEE
T ss_pred HHHHHHHCCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH-------HhCCCEEEEEcCCHHHHHHhCCEE
Confidence 9999999999999 555556 777755443 344444443 1348999999995 778899999
Q ss_pred EEEeeCCEEeeeCCcccccCCCC
Q 015952 290 RIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 290 ~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
++|++|++++.|++++++..+.
T Consensus 230 -~~l~~G~i~~~g~~~~~~~~~~ 251 (263)
T 2olj_A 230 -LFMDGGYIIEEGKPEDLFDRPQ 251 (263)
T ss_dssp -EEEETTEEEEEECHHHHHHSCC
T ss_pred -EEEECCEEEEECCHHHHHhCcc
Confidence 5799999999999999886653
No 16
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=9.6e-48 Score=364.54 Aligned_cols=207 Identities=13% Similarity=0.203 Sum_probs=170.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
.++++++||+++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 4 ~~~l~~~~l~~~y~~-~~v-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~ 72 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGA-IHA-----IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR-----AQKGKIIFNGQDITN 72 (240)
T ss_dssp SEEEEEEEEEEEETT-EEE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CceEEEEeEEEEECC-eeE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCceEEECCEECCC
Confidence 358999999999953 334 999999999999999999999999999999999999 999999999962
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCCC---ChhhHHHHHHHHHHHCC-C-cccccCCCCCChHHHHHHH
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD---ASDNINMIKLWIMEGVR-H-GELVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~---~~~~~~~~~~~ll~~vg-l-~~~~~~~~~lSGGqkQRva 212 (397)
+.+||+||++.+++ .+||+||+.++.. ...+..+.+.++++.++ + ....+++.+|||||||||+
T Consensus 73 ~~~~~~~~~~i~~v~q~~~l~~---~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~ 149 (240)
T 1ji0_A 73 KPAHVINRMGIALVPEGRRIFP---ELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLA 149 (240)
T ss_dssp CCHHHHHHTTEEEECSSCCCCT---TSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHH
T ss_pred CCHHHHHhCCEEEEecCCccCC---CCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHH
Confidence 34999999998876 6899999998642 23345567788999995 8 4456778999999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ ++.++|||+
T Consensus 150 lAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~l~~~l~~~-------~~~g~tvi~vtHd~~~~~~~~d~v- 209 (240)
T 1ji0_A 150 IGRALMSRPKLL--------MMDEPS--LGLAPILVS--EVFEVIQKI-------NQEGTTILLVEQNALGALKVAHYG- 209 (240)
T ss_dssp HHHHHTTCCSEE--------EEECTT--TTCCHHHHH--HHHHHHHHH-------HHTTCCEEEEESCHHHHHHHCSEE-
T ss_pred HHHHHHcCCCEE--------EEcCCc--ccCCHHHHH--HHHHHHHHH-------HHCCCEEEEEecCHHHHHHhCCEE-
Confidence 999999999999 555555 777754443 334444433 1368999999995 788999999
Q ss_pred EEeeCCEEeeeCCcccccC
Q 015952 291 IRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~ 309 (397)
++|++|+++..|++++++.
T Consensus 210 ~~l~~G~i~~~g~~~~~~~ 228 (240)
T 1ji0_A 210 YVLETGQIVLEGKASELLD 228 (240)
T ss_dssp EEEETTEEEEEEEHHHHHT
T ss_pred EEEECCEEEEEcCHHHHhc
Confidence 5799999999999888764
No 17
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.1e-47 Score=360.68 Aligned_cols=200 Identities=17% Similarity=0.177 Sum_probs=164.7
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
++|+++|++++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 3 ~~l~~~~l~~~y~~-~~~-----l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~ 71 (224)
T 2pcj_A 3 EILRAENIKKVIRG-YEI-----LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA-----PTEGKVFLEGKEVDYT 71 (224)
T ss_dssp EEEEEEEEEEEETT-EEE-----EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC-----CSEEEEEETTEECCSS
T ss_pred cEEEEEeEEEEECC-Eee-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECCCC
Confidence 47999999999953 334 999999999999999999999999999999999999 999999999962
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHH
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRM 210 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQR 210 (397)
+.+||+||++.+++ .+||+||+.++.. ...+.++++.++++.+++. ...+++.+||||||||
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qr 148 (224)
T 2pcj_A 72 NEKELSLLRNRKLGFVFQFHYLIP---ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQR 148 (224)
T ss_dssp CHHHHHHHHHHHEEEECSSCCCCT---TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHH
T ss_pred CHHHHHHHHhCcEEEEecCcccCC---CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHH
Confidence 35999999998876 6899999988532 2234456788999999994 4567788999999999
Q ss_pred HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEE
Q 015952 211 RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRA 289 (397)
Q Consensus 211 vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI 289 (397)
|+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||+|||+ ....+|||+
T Consensus 149 v~laral~~~p~ll--------lLDEPt--~~LD~~~~~--~~~~~l~~l-------~~~g~tvi~vtHd~~~~~~~d~v 209 (224)
T 2pcj_A 149 VAIARALANEPILL--------FADEPT--GNLDSANTK--RVMDIFLKI-------NEGGTSIVMVTHERELAELTHRT 209 (224)
T ss_dssp HHHHHHTTTCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEECSCHHHHTTSSEE
T ss_pred HHHHHHHHcCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEcCCHHHHHhCCEE
Confidence 99999999999999 555556 777755443 334444433 1348999999996 334899999
Q ss_pred EEEeeCCEEeeeCC
Q 015952 290 RIRTYLGELLGIPP 303 (397)
Q Consensus 290 ~v~l~~G~iv~~g~ 303 (397)
++|++|++++.|+
T Consensus 210 -~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 210 -LEMKDGKVVGEIT 222 (224)
T ss_dssp -EEEETTEEEEEEE
T ss_pred -EEEECCEEEEEee
Confidence 5799999998875
No 18
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=6e-48 Score=369.48 Aligned_cols=204 Identities=14% Similarity=0.168 Sum_probs=168.8
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
+++|+++||+++|++ ..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 5 ~~~l~i~~l~~~y~~-~~v-----l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~-----p~~G~i~~~g~~~~~ 73 (257)
T 1g6h_A 5 MEILRTENIVKYFGE-FKA-----LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK-----ADEGRVYFENKDITN 73 (257)
T ss_dssp CEEEEEEEEEEEETT-EEE-----EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEECTT
T ss_pred CcEEEEeeeEEEECC-Eee-----EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCEECCC
Confidence 458999999999953 334 999999999999999999999999999999999999 999999999962
Q ss_pred --------CcEEEEecCCCCCCCCCCccHHHHHhcCCCC-----------------hhhHHHHHHHHHHHCCCc-ccccC
Q 015952 146 --------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA-----------------SDNINMIKLWIMEGVRHG-ELVIR 199 (397)
Q Consensus 146 --------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~-----------------~~~~~~~~~~ll~~vgl~-~~~~~ 199 (397)
+.+|||||++.+++ .+||.||+.++... ..+.++++.++++.+++. ...++
T Consensus 74 ~~~~~~~~~~i~~v~q~~~l~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 150 (257)
T 1g6h_A 74 KEPAELYHYGIVRTFQTPQPLK---EMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRK 150 (257)
T ss_dssp CCHHHHHHHTEEECCCCCGGGG---GSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSB
T ss_pred CCHHHHHhCCEEEEccCCccCC---CCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCC
Confidence 35999999998775 68999999886321 123456788999999994 45677
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec
Q 015952 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 200 ~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH 279 (397)
+.+|||||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||+|||
T Consensus 151 ~~~LSgGqkQrv~iAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~l~~~l~~l-------~~~g~tvi~vtH 211 (257)
T 1g6h_A 151 AGELSGGQMKLVEIGRALMTNPKMI--------VMDEPI--AGVAPGLAH--DIFNHVLEL-------KAKGITFLIIEH 211 (257)
T ss_dssp GGGSCHHHHHHHHHHHHHHTCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEECS
T ss_pred chhCCHHHHHHHHHHHHHHcCCCEE--------EEeCCc--cCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEec
Confidence 8899999999999999999999999 555556 777755443 334444433 135899999999
Q ss_pred h--hHHccccEEEEEeeCCEEeeeCCccc
Q 015952 280 G--DLLSLTDRARIRTYLGELLGIPPAKQ 306 (397)
Q Consensus 280 ~--~~~~~aDrI~v~l~~G~iv~~g~~~e 306 (397)
+ ++..+|||+ ++|++|++++.|++++
T Consensus 212 d~~~~~~~~d~v-~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 212 RLDIVLNYIDHL-YVMFNGQIIAEGRGEE 239 (257)
T ss_dssp CCSTTGGGCSEE-EEEETTEEEEEEESHH
T ss_pred CHHHHHHhCCEE-EEEECCEEEEEeCHHH
Confidence 5 788999999 5699999999998877
No 19
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=2e-47 Score=366.11 Aligned_cols=208 Identities=17% Similarity=0.153 Sum_probs=171.4
Q ss_pred CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 68 IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 68 ~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
.|++|+++||+++|+ +..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+.
T Consensus 12 ~~~~l~i~~l~~~y~-~~~v-----l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~ 80 (256)
T 1vpl_A 12 HMGAVVVKDLRKRIG-KKEI-----LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK-----PSSGIVTVFGKNVV 80 (256)
T ss_dssp --CCEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETT
T ss_pred cCCeEEEEEEEEEEC-CEEE-----EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEECCEECC
Confidence 578999999999995 3334 999999999999999999999999999999999999 999999999973
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCC----ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHH
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCK 213 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaI 213 (397)
+.|||+||++.+++ .+||+||+.++.. ...+.++++.++++.+++.+ ..+++.+|||||||||+|
T Consensus 81 ~~~~~~~~~i~~v~q~~~l~~---~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~l 157 (256)
T 1vpl_A 81 EEPHEVRKLISYLPEEAGAYR---NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLI 157 (256)
T ss_dssp TCHHHHHTTEEEECTTCCCCT---TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHH
T ss_pred ccHHHHhhcEEEEcCCCCCCC---CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHH
Confidence 46999999998876 6899999987532 23334567888999999954 567788999999999999
Q ss_pred HHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEE
Q 015952 214 AHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARI 291 (397)
Q Consensus 214 ArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v 291 (397)
||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ .+..+|||+ +
T Consensus 158 AraL~~~p~ll--------lLDEPt--s~LD~~~~~--~l~~~l~~l-------~~~g~tiiivtHd~~~~~~~~d~v-~ 217 (256)
T 1vpl_A 158 ARALMVNPRLA--------ILDEPT--SGLDVLNAR--EVRKILKQA-------SQEGLTILVSSHNMLEVEFLCDRI-A 217 (256)
T ss_dssp HHHHTTCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEEECCHHHHTTTCSEE-E
T ss_pred HHHHHcCCCEE--------EEeCCc--cccCHHHHH--HHHHHHHHH-------HhCCCEEEEEcCCHHHHHHHCCEE-E
Confidence 99999999999 555556 777755443 334444433 1358999999995 778899999 5
Q ss_pred EeeCCEEeeeCCcccccC
Q 015952 292 RTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 292 ~l~~G~iv~~g~~~el~~ 309 (397)
+|++|+++..|++++++.
T Consensus 218 ~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 218 LIHNGTIVETGTVEELKE 235 (256)
T ss_dssp EEETTEEEEEEEHHHHHH
T ss_pred EEECCEEEEecCHHHHHH
Confidence 799999999999988864
No 20
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=1.3e-47 Score=376.31 Aligned_cols=233 Identities=13% Similarity=0.125 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccC--------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCC
Q 015952 41 WDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPK 112 (397)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpn 112 (397)
+..++....+.+|+.++++.+++.... ....|+++||+|+|+++..+ |+||||+|++||++||+|||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~~~~~v-----L~~isl~i~~Ge~vaivG~s 89 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRET-----LQDVSFTVMPGQTLALVGPS 89 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTCBCCCCSSCCEEEEEEEEESSTTCEE-----EEEEEEEECTTCEEEEESSS
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccccccCCCCCeEEEEEEEEEcCCCCce-----eeeeeEEEcCCCEEEEECCC
Confidence 334444555677888887765543211 13469999999999655545 99999999999999999999
Q ss_pred CCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHH
Q 015952 113 GSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINM 182 (397)
Q Consensus 113 GsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~ 182 (397)
|||||||+|+|+|+++ |++|+|.++|. ++.||||||++.+|. .||+||+.++..... .+
T Consensus 90 GsGKSTLl~ll~gl~~-----p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~----~Tv~eNi~~~~~~~~--~~ 158 (306)
T 3nh6_A 90 GAGKSTILRLLFRFYD-----ISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFN----DTIADNIRYGRVTAG--ND 158 (306)
T ss_dssp CHHHHHHHHHHTTSSC-----CSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCS----EEHHHHHHTTSTTCC--HH
T ss_pred CchHHHHHHHHHcCCC-----CCCcEEEECCEEcccCCHHHHhcceEEEecCCccCc----ccHHHHHHhhcccCC--HH
Confidence 9999999999999999 99999999997 357999999999885 699999999864211 12
Q ss_pred HHHHHHHHCCCc------------ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhh
Q 015952 183 IKLWIMEGVRHG------------ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (397)
Q Consensus 183 ~~~~ll~~vgl~------------~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~ 250 (397)
.+.++++.+++. ....++.+|||||||||+|||||+.+|+|| +||||| ++||+....
T Consensus 159 ~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iL--------lLDEPt--s~LD~~~~~- 227 (306)
T 3nh6_A 159 EVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGII--------LLDEAT--SALDTSNER- 227 (306)
T ss_dssp HHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEE--------EEECCS--SCCCHHHHH-
T ss_pred HHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEE--------EEECCc--ccCCHHHHH-
Confidence 233444444442 123456789999999999999999999999 555556 777765444
Q ss_pred hHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 251 KQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 251 ~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
...+.+.++ ..++|+|+|||+ .....|||| ++|++|+|++.|++++++..
T Consensus 228 -~i~~~l~~l--------~~~~Tvi~itH~l~~~~~aD~i-~vl~~G~iv~~G~~~el~~~ 278 (306)
T 3nh6_A 228 -AIQASLAKV--------CANRTTIVVAHRLSTVVNADQI-LVIKDGCIVERGRHEALLSR 278 (306)
T ss_dssp -HHHHHHHHH--------HTTSEEEEECCSHHHHHTCSEE-EEEETTEEEEEECHHHHHHH
T ss_pred -HHHHHHHHH--------cCCCEEEEEEcChHHHHcCCEE-EEEECCEEEEECCHHHHHhc
Confidence 334444433 357899999996 444559999 57999999999999998754
No 21
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=5.4e-47 Score=359.86 Aligned_cols=205 Identities=16% Similarity=0.184 Sum_probs=170.2
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
|++++||+++|+ . + |+|+||+|++ |+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 1 ml~~~~l~~~y~--~-~-----l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 66 (240)
T 2onk_A 1 MFLKVRAEKRLG--N-F-----RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK-----PDRGEVRLNGADITPLP 66 (240)
T ss_dssp CCEEEEEEEEET--T-E-----EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC-----CSEEEEEETTEECTTSC
T ss_pred CEEEEEEEEEeC--C-E-----EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEECCEECCcCc
Confidence 589999999994 3 4 9999999999 9999999999999999999999999 999999999962
Q ss_pred ---CcEEEEecCCCCCCCCCCccHHHHHhcCCCC--hhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcC
Q 015952 146 ---GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--SDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGC 219 (397)
Q Consensus 146 ---~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~ 219 (397)
+.+||+||++.+++ .+||+||+.++... ....++++.++++.+++.+ ..+++.+|||||||||+|||||+.
T Consensus 67 ~~~~~i~~v~q~~~l~~---~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 67 PERRGIGFVPQDYALFP---HLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp TTTSCCBCCCSSCCCCT---TSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhhCcEEEEcCCCccCC---CCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 46999999998876 68999999987542 1223567889999999944 567788999999999999999999
Q ss_pred CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCE
Q 015952 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGE 297 (397)
Q Consensus 220 ~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~ 297 (397)
+|++| +||||| ++||+.... ...+.+.++. .+.|+|||++||+ ++..+|||+ ++|++|+
T Consensus 144 ~p~ll--------lLDEPt--s~LD~~~~~--~~~~~l~~l~------~~~g~tvi~vtHd~~~~~~~~d~i-~~l~~G~ 204 (240)
T 2onk_A 144 QPRLL--------LLDEPL--SAVDLKTKG--VLMEELRFVQ------REFDVPILHVTHDLIEAAMLADEV-AVMLNGR 204 (240)
T ss_dssp CCSSB--------EEESTT--SSCCHHHHH--HHHHHHHHHH------HHHTCCEEEEESCHHHHHHHCSEE-EEEETTE
T ss_pred CCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEeCCHHHHHHhCCEE-EEEECCE
Confidence 99999 555556 777755443 3344444331 1248999999995 788999999 5799999
Q ss_pred EeeeCCcccccCCC
Q 015952 298 LLGIPPAKQIFDIP 311 (397)
Q Consensus 298 iv~~g~~~el~~~~ 311 (397)
+++.|++++++..+
T Consensus 205 i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 205 IVEKGKLKELFSAK 218 (240)
T ss_dssp EEEEECHHHHHHSC
T ss_pred EEEECCHHHHHhCc
Confidence 99999999988765
No 22
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=9.3e-46 Score=352.58 Aligned_cols=204 Identities=16% Similarity=0.213 Sum_probs=161.8
Q ss_pred eEEEEeEEEEEC-CCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----
Q 015952 71 LTDAKNKILSYT-PGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV---- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~-~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~---- 145 (397)
-++++||+|+|+ ++..+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 7 ~~~~~~l~~~y~~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~i~g~~~~~~ 76 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVI-----LDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI-----PENGQVLIDGHDLALA 76 (247)
T ss_dssp EEEEEEEEEESSTTSCEE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEETTTS
T ss_pred ceeEEEEEEEeCCCCcce-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhC
Confidence 489999999993 23435 999999999999999999999999999999999999 999999999972
Q ss_pred ------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCccc------------ccCCCCCChHH
Q 015952 146 ------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL------------VIRRSDSSSLR 207 (397)
Q Consensus 146 ------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~------------~~~~~~lSGGq 207 (397)
+.||||||++.++. .||+||+.++.... ..+.+.++++.+++.+. ..++.+|||||
T Consensus 77 ~~~~~~~~i~~v~Q~~~l~~----~tv~enl~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq 150 (247)
T 2ff7_A 77 DPNWLRRQVGVVLQDNVLLN----RSIIDNISLANPGM--SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQ 150 (247)
T ss_dssp CHHHHHHHEEEECSSCCCTT----SBHHHHHTTTCTTC--CHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHH
T ss_pred CHHHHHhcEEEEeCCCcccc----ccHHHHHhccCCCC--CHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHH
Confidence 46999999998875 59999999874311 12345567777777332 23357899999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccc
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLT 286 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~a 286 (397)
||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .+|+|||+|||+ .....|
T Consensus 151 ~qRv~iAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~i~~~l~~~--------~~g~tviivtH~~~~~~~~ 210 (247)
T 2ff7_A 151 RQRIAIARALVNNPKIL--------IFDEAT--SALDYESEH--VIMRNMHKI--------CKGRTVIIIAHRLSTVKNA 210 (247)
T ss_dssp HHHHHHHHHHTTCCSEE--------EECCCC--SCCCHHHHH--HHHHHHHHH--------HTTSEEEEECSSGGGGTTS
T ss_pred HHHHHHHHHHhcCCCEE--------EEeCCc--ccCCHHHHH--HHHHHHHHH--------cCCCEEEEEeCCHHHHHhC
Confidence 99999999999999999 555555 677754443 233444332 358999999996 444569
Q ss_pred cEEEEEeeCCEEeeeCCcccccCCC
Q 015952 287 DRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 287 DrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
||+ ++|++|++++.|++++++..|
T Consensus 211 d~v-~~l~~G~i~~~g~~~~l~~~~ 234 (247)
T 2ff7_A 211 DRI-IVMEKGKIVEQGKHKELLSEP 234 (247)
T ss_dssp SEE-EEEETTEEEEEECHHHHHTST
T ss_pred CEE-EEEECCEEEEECCHHHHHhCC
Confidence 999 579999999999999998765
No 23
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=5.6e-46 Score=357.62 Aligned_cols=209 Identities=16% Similarity=0.126 Sum_probs=169.6
Q ss_pred eEEEEeEEEEEC-CC---ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-
Q 015952 71 LTDAKNKILSYT-PG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~-~~---~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~- 145 (397)
||+++||+++|+ ++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~v-----l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~-----p~~G~I~~~g~~~ 71 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKA-----LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE-----PTSGDVLYDGERK 71 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEE-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEC
T ss_pred EEEEEEEEEEecCCCccccce-----eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCcEEEECCEEC
Confidence 689999999996 22 334 999999999999999999999999999999999999 999999999963
Q ss_pred ------CcEEEEecCC-CCCCCCCCccHHHHHhcCCC---ChhhHHHHHHHHHHHCCCc--cc-ccCCCCCChHHHHHHH
Q 015952 146 ------GDGTYFLQEY-TIPRGSNSFSLYDTRSLSDD---ASDNINMIKLWIMEGVRHG--EL-VIRRSDSSSLRNRMRC 212 (397)
Q Consensus 146 ------~~ig~v~Q~~-~l~~~~~~ltv~eni~~~~~---~~~~~~~~~~~ll~~vgl~--~~-~~~~~~lSGGqkQRva 212 (397)
+.+|||||++ ..+. .+||+||+.++.. ...+.++++.++++.+++. +. .+++.+|||||||||+
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~ 148 (266)
T 2yz2_A 72 KGYEIRRNIGIAFQYPEDQFF---AERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVA 148 (266)
T ss_dssp CHHHHGGGEEEECSSGGGGCC---CSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHH
T ss_pred chHHhhhhEEEEeccchhhcC---CCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHH
Confidence 4699999996 3333 4899999998643 2223356788899999997 64 5668899999999999
Q ss_pred HHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 213 KAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 213 IArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||+|||+ .+..+|||+
T Consensus 149 lAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~l~~~l~~l-------~~~g~tii~vtHd~~~~~~~~d~v- 208 (266)
T 2yz2_A 149 IASVIVHEPDIL--------ILDEPL--VGLDREGKT--DLLRIVEKW-------KTLGKTVILISHDIETVINHVDRV- 208 (266)
T ss_dssp HHHHHTTCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEECSCCTTTGGGCSEE-
T ss_pred HHHHHHcCCCEE--------EEcCcc--ccCCHHHHH--HHHHHHHHH-------HHcCCEEEEEeCCHHHHHHhCCEE-
Confidence 999999999999 555556 777754443 334444433 1348999999995 777899999
Q ss_pred EEeeCCEEeeeCCcccccCCCC
Q 015952 291 IRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~~~~ 312 (397)
++|++|+++..|++++++..+.
T Consensus 209 ~~l~~G~i~~~g~~~~~~~~~~ 230 (266)
T 2yz2_A 209 VVLEKGKKVFDGTRMEFLEKYD 230 (266)
T ss_dssp EEEETTEEEEEEEHHHHHHHSC
T ss_pred EEEECCEEEEeCCHHHHhcCcc
Confidence 5799999999999988876543
No 24
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.9e-45 Score=350.48 Aligned_cols=203 Identities=13% Similarity=0.202 Sum_probs=165.6
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEE
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTY 150 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~ 150 (397)
+|+++||+++|+.+..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.+ ++.+||
T Consensus 4 ~l~i~~l~~~y~~~~~v-----l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~---~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFL-----FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR-----PIQGKIEV---YQSIGF 70 (253)
T ss_dssp EEEEEEEEEEETTTTEE-----EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC-----CSEEEEEE---CSCEEE
T ss_pred eEEEeeEEEEeCCCCeE-----EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEE---eccEEE
Confidence 79999999999623435 999999999999999999999999999999999999 99999994 467999
Q ss_pred EecCCCCCCCCCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCC
Q 015952 151 FLQEYTIPRGSNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEP 221 (397)
Q Consensus 151 v~Q~~~l~~~~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P 221 (397)
+||++.++. .+||.||+.++.. ......+++.++++.+++.+ ..+++.+|||||||||+|||||+.+|
T Consensus 71 v~q~~~~~~---~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p 147 (253)
T 2nq2_C 71 VPQFFSSPF---AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASEC 147 (253)
T ss_dssp ECSCCCCSS---CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTC
T ss_pred EcCCCccCC---CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 999998875 6899999998642 12334567889999999954 56678899999999999999999999
Q ss_pred CeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEe
Q 015952 222 SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELL 299 (397)
Q Consensus 222 ~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv 299 (397)
++| +||||| ++||+.... ...+.+.++. .+.|+|||++||+ .+.++|||+ ++|++|+ +
T Consensus 148 ~ll--------lLDEPt--s~LD~~~~~--~l~~~l~~l~------~~~g~tvi~vtHd~~~~~~~~d~v-~~l~~G~-~ 207 (253)
T 2nq2_C 148 KLI--------LLDEPT--SALDLANQD--IVLSLLIDLA------QSQNMTVVFTTHQPNQVVAIANKT-LLLNKQN-F 207 (253)
T ss_dssp SEE--------EESSSS--TTSCHHHHH--HHHHHHHHHH------HTSCCEEEEEESCHHHHHHHCSEE-EEEETTE-E
T ss_pred CEE--------EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhcCCEEEEEecCHHHHHHhCCEE-EEEeCCe-E
Confidence 999 555555 677754443 3344444331 1238999999995 777899999 5799999 9
Q ss_pred eeCCcccccC
Q 015952 300 GIPPAKQIFD 309 (397)
Q Consensus 300 ~~g~~~el~~ 309 (397)
+.|++++++.
T Consensus 208 ~~g~~~~~~~ 217 (253)
T 2nq2_C 208 KFGETRNILT 217 (253)
T ss_dssp EEEEHHHHCC
T ss_pred ecCCHHHHhC
Confidence 9999888753
No 25
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=2e-45 Score=354.86 Aligned_cols=209 Identities=12% Similarity=0.169 Sum_probs=164.3
Q ss_pred CCeEEEEeEEEEECCC--ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-
Q 015952 69 GSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~--~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~- 145 (397)
..+|+++||+++|+++ ..+ |++|||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~i 83 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQV-----LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ-----PTGGKVLLDGEPL 83 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCC-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEG
T ss_pred CceEEEEEEEEEeCCCCCcee-----eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEc
Confidence 3579999999999641 334 999999999999999999999999999999999999 999999999972
Q ss_pred ---------CcEEEEecCCCCCCCCCCccHHHHHhcCCCC--h-hhHH-----HHHHHHHHHC--CCc-ccccCCCCCCh
Q 015952 146 ---------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--S-DNIN-----MIKLWIMEGV--RHG-ELVIRRSDSSS 205 (397)
Q Consensus 146 ---------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--~-~~~~-----~~~~~ll~~v--gl~-~~~~~~~~lSG 205 (397)
+.||||||++.++. .||.||+.++... . .... ..+.++++.+ ++. ...+++.+|||
T Consensus 84 ~~~~~~~~~~~i~~v~Q~~~l~~----~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSg 159 (271)
T 2ixe_A 84 VQYDHHYLHTQVAAVGQEPLLFG----RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSG 159 (271)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCS----SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCH
T ss_pred ccCCHHHHhccEEEEecCCcccc----ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCH
Confidence 46999999998875 5999999987541 1 1111 2235667777 563 34567889999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHc
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLS 284 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~ 284 (397)
||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ ..+.|+|||+|||+ ....
T Consensus 160 Gq~QRv~lAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~i~~~l~~~------~~~~g~tviivtHd~~~~~ 221 (271)
T 2ixe_A 160 GQRQAVALARALIRKPRLL--------ILDNAT--SALDAGNQL--RVQRLLYES------PEWASRTVLLITQQLSLAE 221 (271)
T ss_dssp HHHHHHHHHHHHTTCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHC------TTTTTSEEEEECSCHHHHT
T ss_pred HHHHHHHHHHHHhcCCCEE--------EEECCc--cCCCHHHHH--HHHHHHHHH------HhhcCCEEEEEeCCHHHHH
Confidence 9999999999999999999 555556 777754433 334444332 12358999999996 4445
Q ss_pred cccEEEEEeeCCEEeeeCCcccccCC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
.|||| ++|++|++++.|++++++..
T Consensus 222 ~~d~v-~~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 222 RAHHI-LFLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp TCSEE-EEEETTEEEEEECHHHHHHH
T ss_pred hCCEE-EEEECCEEEEECCHHHHHhC
Confidence 69999 57999999999999888654
No 26
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=8.3e-46 Score=359.07 Aligned_cols=209 Identities=13% Similarity=0.066 Sum_probs=168.2
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
.++|+++||+++|++ ..+ |+||||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+
T Consensus 19 ~~~l~~~~l~~~y~~-~~v-----L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~~ 87 (279)
T 2ihy_A 19 HMLIQLDQIGRMKQG-KTI-----LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP-----ATSGTVNLFGKMPGK 87 (279)
T ss_dssp CEEEEEEEEEEEETT-EEE-----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTBCCC-
T ss_pred CceEEEEeEEEEECC-EEE-----EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCCeEEEECCEEccc
Confidence 457999999999953 334 999999999999999999999999999999999999 99999999995
Q ss_pred --------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCcc-cccCCCCCChHH
Q 015952 145 --------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLR 207 (397)
Q Consensus 145 --------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGq 207 (397)
++.|||+||++.++. ...+||+||+.++.. ...+..+++.++++.+++.+ ..+++.+|||||
T Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~-~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq 166 (279)
T 2ihy_A 88 VGYSAETVRQHIGFVSHSLLEKF-QEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGE 166 (279)
T ss_dssp --CCHHHHHTTEEEECHHHHTTS-CTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHH
T ss_pred ccCCHHHHcCcEEEEEcCccccc-CCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHH
Confidence 246999999975422 014699999988642 12334567889999999944 567788999999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceE--EEEech--hHH
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPV--VVVTHG--DLL 283 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TV--IivTH~--~~~ 283 (397)
||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|| |+|||+ ++.
T Consensus 167 kqRv~lAraL~~~p~lL--------lLDEPt--s~LD~~~~~--~l~~~l~~l-------~~~g~tv~~iivtHd~~~~~ 227 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVL--------ILDEPA--AGLDFIARE--SLLSILDSL-------SDSYPTLAMIYVTHFIEEIT 227 (279)
T ss_dssp HHHHHHHHHHHTCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH-------HHHCTTCEEEEEESCGGGCC
T ss_pred HHHHHHHHHHhCCCCEE--------EEeCCc--cccCHHHHH--HHHHHHHHH-------HHCCCEEEEEEEecCHHHHH
Confidence 99999999999999999 555556 777755443 334444433 1248999 999995 777
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccC
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
++|||| ++|++|++++.|++++++.
T Consensus 228 ~~~d~v-~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 228 ANFSKI-LLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp TTCCEE-EEEETTEEEEEEEHHHHCS
T ss_pred HhCCEE-EEEECCEEEEECCHHHHhc
Confidence 899999 5799999999999888763
No 27
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=2.3e-45 Score=350.25 Aligned_cols=203 Identities=16% Similarity=0.090 Sum_probs=159.4
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcc--cCCCCCCCcccEEEECcee-
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl--~~~~~~~p~~G~I~i~G~~- 145 (397)
|+|++++||+++|++ ..+ |+|+||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|..
T Consensus 1 M~~l~~~~l~~~y~~-~~v-----l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~~ 69 (250)
T 2d2e_A 1 MSQLEIRDLWASIDG-ETI-----LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT-----VERGEILLDGENI 69 (250)
T ss_dssp -CEEEEEEEEEEETT-EEE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEEC
T ss_pred CceEEEEeEEEEECC-EEE-----EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCceEEEECCEEC
Confidence 347999999999953 334 9999999999999999999999999999999999 78 999999999972
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-------ChhhHHHHHHHHHHHCCC-cc-cccCCCC-CCh
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-------ASDNINMIKLWIMEGVRH-GE-LVIRRSD-SSS 205 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-------~~~~~~~~~~~ll~~vgl-~~-~~~~~~~-lSG 205 (397)
..++|+||++.+++ .+|+.||+.++.. ...+..+++.++++.+++ .+ ..+++.+ |||
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg 146 (250)
T 2d2e_A 70 LELSPDERARKGLFLAFQYPVEVP---GVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSG 146 (250)
T ss_dssp TTSCHHHHHHTTBCCCCCCCC-CC---SCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC---
T ss_pred CCCCHHHHHhCcEEEeccCCcccc---CCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH
Confidence 24899999998876 6899999987531 112335677889999999 44 4566788 999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHH
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLL 283 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~ 283 (397)
||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||+|||+ .+.
T Consensus 147 GqkQrv~iAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~l~~~l~~l-------~~~g~tvi~vtHd~~~~~ 207 (250)
T 2d2e_A 147 GEKKRNEILQLLVLEPTYA--------VLDETD--SGLDIDALK--VVARGVNAM-------RGPNFGALVITHYQRILN 207 (250)
T ss_dssp -HHHHHHHHHHHHHCCSEE--------EEECGG--GTTCHHHHH--HHHHHHHHH-------CSTTCEEEEECSSSGGGG
T ss_pred HHHHHHHHHHHHHcCCCEE--------EEeCCC--cCCCHHHHH--HHHHHHHHH-------HhcCCEEEEEecCHHHHH
Confidence 9999999999999999999 556666 777755443 344444443 2368999999995 666
Q ss_pred cc-ccEEEEEeeCCEEeeeCCcc
Q 015952 284 SL-TDRARIRTYLGELLGIPPAK 305 (397)
Q Consensus 284 ~~-aDrI~v~l~~G~iv~~g~~~ 305 (397)
.+ |||+ ++|++|++++.|+++
T Consensus 208 ~~~~d~v-~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 208 YIQPDKV-HVMMDGRVVATGGPE 229 (250)
T ss_dssp TSCCSEE-EEEETTEEEEEESHH
T ss_pred HhcCCEE-EEEECCEEEEEeCHH
Confidence 77 5999 579999999988875
No 28
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=1.8e-45 Score=349.40 Aligned_cols=203 Identities=12% Similarity=0.207 Sum_probs=162.7
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce------
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS------ 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~------ 144 (397)
|++++||+++|+++..+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|.
T Consensus 1 ml~~~~l~~~y~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 70 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQI-----LRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ-----PTAGEITIDGQPIDNIS 70 (243)
T ss_dssp CEEEEEEEECSSSSSCS-----EEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC-----CSBSCEEETTEESTTTS
T ss_pred CEEEEEEEEEeCCCCce-----EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCcEEEECCEEhhhCC
Confidence 58999999999423334 999999999999999999999999999999999999 99999999996
Q ss_pred ----eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCccc-c-----------cCCCCCChHHH
Q 015952 145 ----VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL-V-----------IRRSDSSSLRN 208 (397)
Q Consensus 145 ----~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~-~-----------~~~~~lSGGqk 208 (397)
++.+||+||++.++. .||.||+.++..... ..+.+.++++.+++.+. . .++.+||||||
T Consensus 71 ~~~~~~~i~~v~q~~~l~~----~tv~enl~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~ 145 (243)
T 1mv5_A 71 LENWRSQIGFVSQDSAIMA----GTIRENLTYGLEGDY-TDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR 145 (243)
T ss_dssp CSCCTTTCCEECCSSCCCC----EEHHHHTTSCTTSCS-CHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred HHHHHhhEEEEcCCCcccc----ccHHHHHhhhccCCC-CHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHH
Confidence 246999999998875 599999998732111 12346678888887432 2 23568999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHcccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTD 287 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aD 287 (397)
|||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .+|+|||++||+ .....||
T Consensus 146 qrv~lAral~~~p~ll--------lLDEPt--s~LD~~~~~--~i~~~l~~~--------~~~~tvi~vtH~~~~~~~~d 205 (243)
T 1mv5_A 146 QRLAIARAFLRNPKIL--------MLDEAT--ASLDSESES--MVQKALDSL--------MKGRTTLVIAHRLSTIVDAD 205 (243)
T ss_dssp HHHHHHHHHHHCCSEE--------EEECCS--CSSCSSSCC--HHHHHHHHH--------HTTSEEEEECCSHHHHHHCS
T ss_pred HHHHHHHHHhcCCCEE--------EEECCc--ccCCHHHHH--HHHHHHHHh--------cCCCEEEEEeCChHHHHhCC
Confidence 9999999999999999 555556 788876665 344555443 258999999996 4445699
Q ss_pred EEEEEeeCCEEeeeCCcccccC
Q 015952 288 RARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 288 rI~v~l~~G~iv~~g~~~el~~ 309 (397)
|+ ++|++|++++.|++++++.
T Consensus 206 ~v-~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 206 KI-YFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp EE-EEEETTEECCCSCHHHHHH
T ss_pred EE-EEEECCEEEEeCCHHHHHh
Confidence 99 5799999999999887764
No 29
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=4.6e-45 Score=369.00 Aligned_cols=206 Identities=12% Similarity=0.140 Sum_probs=169.2
Q ss_pred CCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 69 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
...|+++||+|+|+.+ ..+ |+||||+|++||+++|+||||||||||+|+|+|+++ ++|+|.++|+
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~-----L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~------~~G~I~i~G~~i~ 85 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAI-----LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN------TEGEIQIDGVSWD 85 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCS-----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE------EEEEEEESSCBTT
T ss_pred CCeEEEEEEEEEecCCCeEE-----eeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC------CCeEEEECCEECC
Confidence 4579999999999533 323 999999999999999999999999999999999975 6899999997
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCC-----------CCh
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSD-----------SSS 205 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~-----------lSG 205 (397)
++.||||||++.+|+ +||+||+.+.... .++++.++++.+++. ...++|.+ |||
T Consensus 86 ~~~~~~~rr~ig~v~Q~~~lf~----~tv~enl~~~~~~---~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSG 158 (390)
T 3gd7_A 86 SITLEQWRKAFGVIPQKVFIFS----GTFRKNLDPNAAH---SDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSH 158 (390)
T ss_dssp SSCHHHHHHTEEEESCCCCCCS----EEHHHHHCTTCCS---CHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCH
T ss_pred cCChHHHhCCEEEEcCCcccCc----cCHHHHhhhcccc---CHHHHHHHHHHhCCHHHHhhcccccccccccccccCCH
Confidence 267999999999885 7999999854321 234577899999994 45666777 999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHc
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLS 284 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~ 284 (397)
||||||+|||||+.+|++| +||||| ++||+.+.. ...+.+.+ ...++|+|+|||+ ++..
T Consensus 159 GqrQRvalARAL~~~P~lL--------LLDEPt--s~LD~~~~~--~l~~~l~~--------~~~~~tvi~vtHd~e~~~ 218 (390)
T 3gd7_A 159 GHKQLMCLARSVLSKAKIL--------LLDEPS--AHLDPVTYQ--IIRRTLKQ--------AFADCTVILCEARIEAML 218 (390)
T ss_dssp HHHHHHHHHHHHHTTCCEE--------EEESHH--HHSCHHHHH--HHHHHHHT--------TTTTSCEEEECSSSGGGT
T ss_pred HHHHHHHHHHHHhcCCCEE--------EEeCCc--cCCCHHHHH--HHHHHHHH--------HhCCCEEEEEEcCHHHHH
Confidence 9999999999999999999 666666 888865443 23333322 2358999999996 7777
Q ss_pred cccEEEEEeeCCEEeeeCCcccccCCCCC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFDIPES 313 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~~~~~ 313 (397)
.|||| ++|++|+|++.|++++++..|.+
T Consensus 219 ~aDri-~vl~~G~i~~~g~~~el~~~p~~ 246 (390)
T 3gd7_A 219 ECDQF-LVIEENKVRQYDSILELYHYPAD 246 (390)
T ss_dssp TCSEE-EEEETTEEEEESSHHHHHHCCSB
T ss_pred hCCEE-EEEECCEEEEECCHHHHHhCCCc
Confidence 89999 56999999999999999988763
No 30
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=1.2e-44 Score=348.71 Aligned_cols=206 Identities=15% Similarity=0.074 Sum_probs=162.6
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcc--cCCCCCCCcccEEEECcee-
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV--FENDKFASERAQVTYNSSV- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl--~~~~~~~p~~G~I~i~G~~- 145 (397)
+++|+++||+++|+ +..+ |+|+||+|++||+++|+||||||||||+|+|+|+ ++ |++|+|.++|..
T Consensus 18 ~~~l~~~~l~~~y~-~~~v-----l~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~-----p~~G~I~~~g~~i 86 (267)
T 2zu0_C 18 SHMLSIKDLHVSVE-DKAI-----LRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE-----VTGGTVEFKGKDL 86 (267)
T ss_dssp --CEEEEEEEEEET-TEEE-----EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE-----EEEEEEEETTEEG
T ss_pred CceEEEEeEEEEEC-CEEE-----EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC-----CCCeEEEECCEEC
Confidence 46899999999995 3334 9999999999999999999999999999999999 57 899999999972
Q ss_pred ----------CcEEEEecCCCCCCCCCCccHHHHHhcCCC-----------ChhhHHHHHHHHHHHCCCc-cc-ccCCC-
Q 015952 146 ----------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-----------ASDNINMIKLWIMEGVRHG-EL-VIRRS- 201 (397)
Q Consensus 146 ----------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-----------~~~~~~~~~~~ll~~vgl~-~~-~~~~~- 201 (397)
..+||+||++.+++ .+|+.+|+.+... ...+..+++.++++.+++. .. .+++.
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~---~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 163 (267)
T 2zu0_C 87 LALSPEDRAGEGIFMAFQYPVEIP---GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNV 163 (267)
T ss_dssp GGSCHHHHHHHTEEEECSSCCCCT---TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTT
T ss_pred CcCCHHHHhhCCEEEEccCccccc---cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 24999999998876 6899999875321 1223356788999999994 43 45565
Q ss_pred CCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-
Q 015952 202 DSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG- 280 (397)
Q Consensus 202 ~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~- 280 (397)
+|||||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~lL--------lLDEPt--s~LD~~~~~--~l~~~l~~l-------~~~g~tviivtHd~ 224 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPELC--------ILDESD--SGLDIDALK--VVADGVNSL-------RDGKRSFIIVTHYQ 224 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHTT-------CCSSCEEEEECSSG
T ss_pred CCCHHHHHHHHHHHHHHhCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHH-------HhcCCEEEEEeeCH
Confidence 59999999999999999999999 555556 777754433 233333322 2358999999995
Q ss_pred -hHHcc-ccEEEEEeeCCEEeeeCCccccc
Q 015952 281 -DLLSL-TDRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 281 -~~~~~-aDrI~v~l~~G~iv~~g~~~el~ 308 (397)
.+..+ |||+ ++|++|++++.|+++++.
T Consensus 225 ~~~~~~~~d~v-~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 225 RILDYIKPDYV-HVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp GGGGTSCCSEE-EEEETTEEEEEECTTHHH
T ss_pred HHHHhhcCCEE-EEEECCEEEEEcCHHHHh
Confidence 56665 9999 579999999999887653
No 31
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=4e-44 Score=378.93 Aligned_cols=240 Identities=11% Similarity=0.159 Sum_probs=188.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccccccccC------CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEE
Q 015952 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLL 108 (397)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaL 108 (397)
.....+..++....+.+|+.++++.+++.+.. ...+++++||+|+|+++ .++ |+|+||+|++||+++|
T Consensus 300 ~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~i~l~i~~G~~~~i 374 (582)
T 3b5x_A 300 ALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPA-----LSHVSFSIPQGKTVAL 374 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCCCCCCCCCeEEEEEEEEEcCCCCccc-----cccceEEECCCCEEEE
Confidence 34456667777888899999999876543211 13479999999999643 334 9999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChh
Q 015952 109 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 178 (397)
Q Consensus 109 vGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~ 178 (397)
+||||||||||+|+|+|+++ |++|+|.++|. ++++|||||++.+++ .|++||+.++....
T Consensus 375 vG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~----~tv~eni~~~~~~~- 444 (582)
T 3b5x_A 375 VGRSGSGKSTIANLFTRFYD-----VDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFN----DTIANNIAYAAEGE- 444 (582)
T ss_pred ECCCCCCHHHHHHHHhcCCC-----CCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCcccc----ccHHHHHhccCCCC-
Confidence 99999999999999999999 99999999996 357999999999886 59999999975211
Q ss_pred hHHHHHHHHHHHCCCccc------------ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccccc
Q 015952 179 NINMIKLWIMEGVRHGEL------------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 246 (397)
Q Consensus 179 ~~~~~~~~ll~~vgl~~~------------~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~ 246 (397)
..++.+.++++.+++.+. ..++.+||||||||++|||||+++|++| +||||| ++||+.
T Consensus 445 ~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~il--------llDEpt--s~LD~~ 514 (582)
T 3b5x_A 445 YTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVL--------ILDEAT--SALDTE 514 (582)
T ss_pred CCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEE--------EEECcc--ccCCHH
Confidence 123456677777777322 2235789999999999999999999999 666666 777765
Q ss_pred chhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 247 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 247 ~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
... ...+.+.++ .+|+|+|+|||+ ...+.|||| ++|++|++++.|++++++..+
T Consensus 515 ~~~--~i~~~l~~~--------~~~~tvi~itH~~~~~~~~d~i-~~l~~G~i~~~g~~~~l~~~~ 569 (582)
T 3b5x_A 515 SER--AIQAALDEL--------QKNKTVLVIAHRLSTIEQADEI-LVVDEGEIIERGRHADLLAQD 569 (582)
T ss_pred HHH--HHHHHHHHH--------cCCCEEEEEecCHHHHHhCCEE-EEEECCEEEEECCHHHHHhCC
Confidence 544 233444332 348999999996 555689999 579999999999999987653
No 32
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=3.7e-44 Score=339.48 Aligned_cols=207 Identities=14% Similarity=0.177 Sum_probs=156.0
Q ss_pred CCeEEEEeEEEEECC-CceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCc
Q 015952 69 GSLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~-~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ 147 (397)
|.+++++||+++|+. +..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| .
T Consensus 1 M~~l~~~~l~~~y~~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g---~ 67 (237)
T 2cbz_A 1 MNSITVRNATFTWARSDPPT-----LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD-----KVEGHVAIKG---S 67 (237)
T ss_dssp -CCEEEEEEEEESCTTSCCS-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE-----EEEEEEEECS---C
T ss_pred CCeEEEEEEEEEeCCCCCce-----eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCceEEECC---E
Confidence 347999999999963 2334 999999999999999999999999999999999999 9999999999 5
Q ss_pred EEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHH---HHHHCCC-c-----ccccCCCCCChHHHHHHHHHHHHc
Q 015952 148 GTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLW---IMEGVRH-G-----ELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 148 ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~---ll~~vgl-~-----~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
+||+||++.++ .+||.||+.++.....+..+.+.+ +++.+++ . ...+++.+|||||||||+|||||+
T Consensus 68 i~~v~Q~~~~~----~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~ 143 (237)
T 2cbz_A 68 VAYVPQQAWIQ----NDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVY 143 (237)
T ss_dssp EEEECSSCCCC----SEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred EEEEcCCCcCC----CcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 99999998765 489999999875422221112211 2223332 1 134568899999999999999999
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCE
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGE 297 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~ 297 (397)
.+|++| +||||| ++||+... +.+.+.+... ....+|+|||+|||+ .....|||+ ++|++|+
T Consensus 144 ~~p~ll--------lLDEPt--s~LD~~~~------~~i~~~l~~~-~~~~~~~tviivtH~~~~~~~~d~v-~~l~~G~ 205 (237)
T 2cbz_A 144 SNADIY--------LFDDPL--SAVDAHVG------KHIFENVIGP-KGMLKNKTRILVTHSMSYLPQVDVI-IVMSGGK 205 (237)
T ss_dssp HCCSEE--------EEESTT--TTSCHHHH------HHHHHHTTST-TSTTTTSEEEEECSCSTTGGGSSEE-EEEETTE
T ss_pred cCCCEE--------EEeCcc--cccCHHHH------HHHHHHHHHH-HhhcCCCEEEEEecChHHHHhCCEE-EEEeCCE
Confidence 999999 555556 77775433 3333333100 011358999999996 444679999 5799999
Q ss_pred EeeeCCcccccCC
Q 015952 298 LLGIPPAKQIFDI 310 (397)
Q Consensus 298 iv~~g~~~el~~~ 310 (397)
+++.|++++++..
T Consensus 206 i~~~g~~~~~~~~ 218 (237)
T 2cbz_A 206 ISEMGSYQELLAR 218 (237)
T ss_dssp EEEEECHHHHHHH
T ss_pred EEEeCCHHHHhhc
Confidence 9999999887643
No 33
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.1e-44 Score=345.85 Aligned_cols=199 Identities=15% Similarity=0.176 Sum_probs=164.7
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-----
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----- 145 (397)
|++++||+++ .+ |+|+||+|++||+++|+||||||||||+|+|+|+++ |+ |+|.++|..
T Consensus 4 ~l~~~~l~~~-----~v-----l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~-----p~-G~i~~~g~~~~~~~ 67 (249)
T 2qi9_C 4 VMQLQDVAES-----TR-----LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS-----GK-GSIQFAGQPLEAWS 67 (249)
T ss_dssp EEEEEEEEET-----TT-----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CE-EEEEETTEEGGGSC
T ss_pred EEEEEceEEE-----EE-----EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CC-eEEEECCEECCcCC
Confidence 7999999976 24 999999999999999999999999999999999999 99 999999972
Q ss_pred -----CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcC
Q 015952 146 -----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGC 219 (397)
Q Consensus 146 -----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~ 219 (397)
+.+||+||++.++. .+||+||+.++...... ++++.++++.+++.+ ..+++.+|||||||||+|||||+.
T Consensus 68 ~~~~~~~i~~v~q~~~~~~---~~tv~e~l~~~~~~~~~-~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 143 (249)
T 2qi9_C 68 ATKLALHRAYLSQQQTPPF---ATPVWHYLTLHQHDKTR-TELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 143 (249)
T ss_dssp HHHHHHHEEEECSCCCCCT---TCBHHHHHHTTCSSTTC-HHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHHhceEEEECCCCccCC---CCcHHHHHHHhhccCCc-HHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 46999999998776 68999999987432112 567888999999954 567788999999999999999999
Q ss_pred CCC-------eEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEE
Q 015952 220 EPS-------VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRAR 290 (397)
Q Consensus 220 ~P~-------iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~ 290 (397)
+|+ +| +||||| ++||+.... ...+.+.++ .++|+|||++||+ .+..+|||+
T Consensus 144 ~p~~~~~~~~ll--------lLDEPt--s~LD~~~~~--~l~~~l~~l-------~~~g~tviivtHd~~~~~~~~d~v- 203 (249)
T 2qi9_C 144 ITPQANPAGQLL--------LLDEPM--NSLDVAQQS--ALDKILSAL-------SQQGLAIVMSSHDLNHTLRHAHRA- 203 (249)
T ss_dssp HCTTTCTTCCEE--------EESSTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEECSCHHHHHHHCSEE-
T ss_pred CCCcCCCCCeEE--------EEECCc--ccCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHHHHHhCCEE-
Confidence 999 99 555556 777755443 334444333 1358999999995 677999999
Q ss_pred EEeeCCEEeeeCCcccccC
Q 015952 291 IRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 291 v~l~~G~iv~~g~~~el~~ 309 (397)
++|++|++++.|++++++.
T Consensus 204 ~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 204 WLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp EEEETTEEEEEEEHHHHSC
T ss_pred EEEECCEEEEeCCHHHHhc
Confidence 5799999999999888763
No 34
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=2.8e-44 Score=344.76 Aligned_cols=202 Identities=12% Similarity=0.186 Sum_probs=160.1
Q ss_pred CeEEEEeEEEEECCC--ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---
Q 015952 70 SLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~--~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
.+|+++||+++|++. ..+ |+|+||+|++|++++|+||||||||||+|+|+|+++ | +|+|.++|.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~v-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----~-~G~I~i~g~~i~ 84 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRT-----LKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD-----A-EGDIKIGGKNVN 84 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCS-----EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC-----C-EEEEEETTEEGG
T ss_pred CeEEEEEEEEEeCCCCcCce-----eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC-----C-CeEEEECCEEhh
Confidence 579999999999643 224 999999999999999999999999999999999998 8 899999996
Q ss_pred -------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCccc------------ccCCCCCCh
Q 015952 145 -------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGEL------------VIRRSDSSS 205 (397)
Q Consensus 145 -------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~------------~~~~~~lSG 205 (397)
++.|||+||++.++. .||+||+.++..... .+.+.++++.+++.+. ..++.+|||
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~----~tv~enl~~~~~~~~--~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSg 158 (260)
T 2ghi_A 85 KYNRNSIRSIIGIVPQDTILFN----ETIKYNILYGKLDAT--DEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSG 158 (260)
T ss_dssp GBCHHHHHTTEEEECSSCCCCS----EEHHHHHHTTCTTCC--HHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCH
T ss_pred hcCHHHHhccEEEEcCCCcccc----cCHHHHHhccCCCCC--HHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCH
Confidence 256999999998875 699999998643211 2345567777776221 245678999
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHc
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLS 284 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~ 284 (397)
||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .+|+|||+|||+ ....
T Consensus 159 GqkqRv~lAraL~~~p~ll--------lLDEPt--s~LD~~~~~--~i~~~l~~l--------~~~~tviivtH~~~~~~ 218 (260)
T 2ghi_A 159 GERQRIAIARCLLKDPKIV--------IFDEAT--SSLDSKTEY--LFQKAVEDL--------RKNRTLIIIAHRLSTIS 218 (260)
T ss_dssp HHHHHHHHHHHHHHCCSEE--------EEECCC--CTTCHHHHH--HHHHHHHHH--------TTTSEEEEECSSGGGST
T ss_pred HHHHHHHHHHHHHcCCCEE--------EEECcc--ccCCHHHHH--HHHHHHHHh--------cCCCEEEEEcCCHHHHH
Confidence 9999999999999999999 555555 777754433 334444333 347999999996 4445
Q ss_pred cccEEEEEeeCCEEeeeCCcccccC
Q 015952 285 LTDRARIRTYLGELLGIPPAKQIFD 309 (397)
Q Consensus 285 ~aDrI~v~l~~G~iv~~g~~~el~~ 309 (397)
.|||+ ++|++|++++.|++++++.
T Consensus 219 ~~d~i-~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 219 SAESI-ILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp TCSEE-EEEETTEEEEEECHHHHHH
T ss_pred hCCEE-EEEECCEEEEECCHHHHHh
Confidence 69999 5799999999999988864
No 35
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=7.4e-44 Score=335.62 Aligned_cols=201 Identities=12% Similarity=0.088 Sum_probs=155.2
Q ss_pred CeEEEEeEEEEECC-CceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 70 SLTDAKNKILSYTP-GAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 70 ~~lel~nvs~~Y~~-~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
.+|+++||+++|+. +..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| +|
T Consensus 5 ~~l~~~~l~~~y~~~~~~i-----l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g---~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPV-----LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSG---RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCS-----EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEECS---CE
T ss_pred ceEEEEEEEEEeCCCCcee-----eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCccEEEECC---EE
Confidence 47999999999963 2334 999999999999999999999999999999999999 9999999998 59
Q ss_pred EEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc------------cccCCCCCChHHHHHHHHHHH
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHK 216 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArA 216 (397)
||+||++.+++ .||+||+.++..... ....++++.+++.+ ...++.+|||||||||+||||
T Consensus 72 ~~v~q~~~~~~----~tv~enl~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAra 144 (229)
T 2pze_A 72 SFCSQFSWIMP----GTIKENIIFGVSYDE---YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARA 144 (229)
T ss_dssp EEECSSCCCCS----BCHHHHHHTTSCCCH---HHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHH
T ss_pred EEEecCCcccC----CCHHHHhhccCCcCh---HHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHH
Confidence 99999998875 499999998753211 11223444444421 122357899999999999999
Q ss_pred HcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeC
Q 015952 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYL 295 (397)
Q Consensus 217 L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~ 295 (397)
|+.+|++| +||||| ++||+... +.+.+.+. ....+|+|||++||+ .....|||+ ++|++
T Consensus 145 l~~~p~ll--------lLDEPt--s~LD~~~~------~~i~~~l~---~~~~~~~tvi~vtH~~~~~~~~d~v-~~l~~ 204 (229)
T 2pze_A 145 VYKDADLY--------LLDSPF--GYLDVLTE------KEIFESCV---CKLMANKTRILVTSKMEHLKKADKI-LILHE 204 (229)
T ss_dssp HHSCCSEE--------EEESTT--TTSCHHHH------HHHHHHCC---CCCTTTSEEEEECCCHHHHHHCSEE-EEEET
T ss_pred HhcCCCEE--------EEECcc--cCCCHHHH------HHHHHHHH---HHhhCCCEEEEEcCChHHHHhCCEE-EEEEC
Confidence 99999999 555555 67774433 34444321 112358999999996 334569999 57999
Q ss_pred CEEeeeCCcccccCC
Q 015952 296 GELLGIPPAKQIFDI 310 (397)
Q Consensus 296 G~iv~~g~~~el~~~ 310 (397)
|++++.|++++++..
T Consensus 205 G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 205 GSSYFYGTFSELQNL 219 (229)
T ss_dssp TEEEEEECHHHHHTC
T ss_pred CEEEEECCHHHHHhc
Confidence 999999999888754
No 36
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=5.7e-44 Score=377.61 Aligned_cols=240 Identities=12% Similarity=0.166 Sum_probs=187.1
Q ss_pred chhhhhHHHHHHHHHHHHHHHHHhccccccccC--------CCCeEEEEeEEEEECCCc-eEeeccCceeeeEEEcCCcE
Q 015952 35 EGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGA-WIENVGGMTLSDYDVPKTTS 105 (397)
Q Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~lel~nvs~~Y~~~~-~v~~~~~L~~isl~I~~Ge~ 105 (397)
......+..+++...+.+|+.++++.+++.... ....++++||+|+|+++. ++ |+|+||+|++||+
T Consensus 295 ~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~isl~i~~G~~ 369 (578)
T 4a82_A 295 RRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPI-----LKDINLSIEKGET 369 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCS-----EEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcc-----eeeeEEEECCCCE
Confidence 344556777788888999999999876653321 123599999999996432 34 9999999999999
Q ss_pred EEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD 175 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~ 175 (397)
++|+||||||||||+|+|+|+++ |++|+|.++|. ++++|||||++.+++ .|++||+.++..
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~----~tv~eni~~~~~ 440 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRFYD-----VTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFS----DTVKENILLGRP 440 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTSSC-----CSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCS----SBHHHHHGGGCS
T ss_pred EEEECCCCChHHHHHHHHhcCCC-----CCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCc----ccHHHHHhcCCC
Confidence 99999999999999999999999 99999999997 347999999999886 599999999764
Q ss_pred ChhhHHHHHHHHHHHCCCcc------------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccc
Q 015952 176 ASDNINMIKLWIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 243 (397)
Q Consensus 176 ~~~~~~~~~~~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~L 243 (397)
... .+.+.++++.+++.+ ...++.+||||||||++|||||+++|++| +||||| ++|
T Consensus 441 ~~~--~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~il--------llDEpt--s~L 508 (578)
T 4a82_A 441 TAT--DEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPIL--------ILDEAT--SAL 508 (578)
T ss_dssp SCC--HHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEE--------EEESTT--TTC
T ss_pred CCC--HHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEE--------EEECcc--ccC
Confidence 221 123445555555521 12345689999999999999999999999 666666 788
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
|+.++. ...+.+.++ .+++|+|+|||+ ...+.|||| ++|++|++++.|++++++..+
T Consensus 509 D~~~~~--~i~~~l~~~--------~~~~t~i~itH~l~~~~~~d~i-~~l~~G~i~~~g~~~el~~~~ 566 (578)
T 4a82_A 509 DLESES--IIQEALDVL--------SKDRTTLIVAHRLSTITHADKI-VVIENGHIVETGTHRELIAKQ 566 (578)
T ss_dssp CHHHHH--HHHHHHHHH--------TTTSEEEEECSSGGGTTTCSEE-EEEETTEEEEEECHHHHHHTT
T ss_pred CHHHHH--HHHHHHHHH--------cCCCEEEEEecCHHHHHcCCEE-EEEECCEEEEECCHHHHHhCC
Confidence 865443 233333332 457899999996 555679999 579999999999999988653
No 37
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=5.7e-44 Score=377.76 Aligned_cols=238 Identities=9% Similarity=0.107 Sum_probs=186.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhccccccccC------CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEE
Q 015952 37 SRDSWDSLVDQRRRDAVFREVLQSYDQLRTR------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLI 109 (397)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLv 109 (397)
....+..++....+.+|+.++++.+++.+.. ...+++++||+|+|+++ .++ |+|+||+|++||+++|+
T Consensus 301 l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~v~~~i~~G~~~~iv 375 (582)
T 3b60_A 301 LTNVNAQFQRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPA-----LRNINLKIPAGKTVALV 375 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCSCCCCCBCCSCCCCCEEEEEEEECSSSSSCCS-----EEEEEEEECTTCEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCcEEEEEEEEEcCCCCCcc-----ccceeEEEcCCCEEEEE
Confidence 3445666777778899999999876543211 13479999999999643 334 99999999999999999
Q ss_pred CCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhh
Q 015952 110 GPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDN 179 (397)
Q Consensus 110 GpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~ 179 (397)
||||||||||+|+|+|+++ |++|+|.++|. ++++|||||++.+++ .|++||+.++.... .
T Consensus 376 G~sGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~----~tv~eni~~~~~~~-~ 445 (582)
T 3b60_A 376 GRSGSGKSTIASLITRFYD-----IDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN----DTVANNIAYARTEE-Y 445 (582)
T ss_dssp ECTTSSHHHHHHHHTTTTC-----CSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS----SBHHHHHHTTTTSC-C
T ss_pred CCCCCCHHHHHHHHhhccC-----CCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCC----CCHHHHHhccCCCC-C
Confidence 9999999999999999999 99999999997 247999999999886 59999999975211 1
Q ss_pred HHHHHHHHHHHCCCccc------------ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccc
Q 015952 180 INMIKLWIMEGVRHGEL------------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDS 247 (397)
Q Consensus 180 ~~~~~~~ll~~vgl~~~------------~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~ 247 (397)
.++.+.++++.+++.+. ..++.+||||||||++|||||+++|++| +||||| ++||+..
T Consensus 446 ~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~il--------llDEpt--s~LD~~~ 515 (582)
T 3b60_A 446 SREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPIL--------ILDEAT--SALDTES 515 (582)
T ss_dssp CHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEE--------EEETTT--SSCCHHH
T ss_pred CHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEE--------EEECcc--ccCCHHH
Confidence 13446667777777321 2345789999999999999999999999 666666 7777655
Q ss_pred hhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 248 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 248 ~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
+. ...+.+.++ .+|+|+|+|||+ ...+.|||| ++|++|++++.|++++++..
T Consensus 516 ~~--~i~~~l~~~--------~~~~tvi~itH~~~~~~~~d~i-~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 516 ER--AIQAALDEL--------QKNRTSLVIAHRLSTIEQADEI-VVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HH--HHHHHHHHH--------HTTSEEEEECSCGGGTTTCSEE-EEEETTEEEEEECHHHHHHH
T ss_pred HH--HHHHHHHHH--------hCCCEEEEEeccHHHHHhCCEE-EEEECCEEEEecCHHHHHHc
Confidence 44 234444333 348999999996 555689999 57999999999999998754
No 38
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-43 Score=375.96 Aligned_cols=236 Identities=14% Similarity=0.170 Sum_probs=183.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccccccccC--------CCCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEE
Q 015952 38 RDSWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLL 108 (397)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaL 108 (397)
...+..+++.+.+.+|+.++++.+++.... ....++++||+|+|+++ .++ |+|+||+|++||+++|
T Consensus 300 ~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~-----l~~isl~i~~Ge~~~i 374 (587)
T 3qf4_A 300 GNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPV-----LSGVNFSVKPGSLVAV 374 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBCCSCCCCCEEEEEEEECSSSSSCCS-----EEEEEEEECTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccccCCCCCcEEEEEEEEEcCCCCCcc-----eeceEEEEcCCCEEEE
Confidence 345566777888899999999876543221 12369999999999643 334 9999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChh
Q 015952 109 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 178 (397)
Q Consensus 109 vGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~ 178 (397)
+||||||||||+|+|+|+++ |++|+|.++|. +++||||||++.+++ .|++||+.++.....
T Consensus 375 vG~sGsGKSTll~~l~g~~~-----~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~----~tv~eni~~~~~~~~ 445 (587)
T 3qf4_A 375 LGETGSGKSTLMNLIPRLID-----PERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFS----GTIKENLKWGREDAT 445 (587)
T ss_dssp ECSSSSSHHHHHHTTTTSSC-----CSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCS----EEHHHHHTTTCSSCC
T ss_pred ECCCCCCHHHHHHHHhCCcc-----CCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcC----ccHHHHHhccCCCCC
Confidence 99999999999999999999 99999999997 357999999999886 599999998764211
Q ss_pred hHHHHHHHHHHHCC-----------Cc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccccc
Q 015952 179 NINMIKLWIMEGVR-----------HG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 246 (397)
Q Consensus 179 ~~~~~~~~ll~~vg-----------l~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~ 246 (397)
. +.+.++++..+ ++ ....++.+||||||||++|||||+++|++| +||||| ++||+.
T Consensus 446 ~--~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~il--------llDEpt--s~LD~~ 513 (587)
T 3qf4_A 446 D--DEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVL--------ILDDCT--SSVDPI 513 (587)
T ss_dssp H--HHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEE--------EEESCC--TTSCHH
T ss_pred H--HHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEE--------EEECCc--ccCCHH
Confidence 1 12222333333 31 234567899999999999999999999999 555556 777765
Q ss_pred chhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 247 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 247 ~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
++. ...+.+.++ .+|+|+|+|||+ .....|||| ++|++|++++.|++++++..
T Consensus 514 ~~~--~i~~~l~~~--------~~~~tvi~itH~l~~~~~~d~i-~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 514 TEK--RILDGLKRY--------TKGCTTFIITQKIPTALLADKI-LVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHH--HHHHHHHHH--------STTCEEEEEESCHHHHTTSSEE-EEEETTEEEEEECHHHHHHH
T ss_pred HHH--HHHHHHHHh--------CCCCEEEEEecChHHHHhCCEE-EEEECCEEEEECCHHHHHhC
Confidence 544 333444332 468999999996 556789999 57999999999999998754
No 39
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=1.4e-43 Score=375.67 Aligned_cols=239 Identities=13% Similarity=0.159 Sum_probs=183.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhccccccccC--------CCCe-EEEEeEEEEECCC--ceEeeccCceeeeEEEcCCcE
Q 015952 37 SRDSWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSL-TDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTS 105 (397)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-lel~nvs~~Y~~~--~~v~~~~~L~~isl~I~~Ge~ 105 (397)
....+..++....+.+|+.++++.+++.+.. .... ++++||+|+|+++ .++ |+|+||+|++||+
T Consensus 298 l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~v-----l~~isl~i~~G~~ 372 (595)
T 2yl4_A 298 LSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPI-----FQDFSLSIPSGSV 372 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCSSCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEE-----EEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCcc-----ccceEEEEcCCCE
Confidence 3445566667777899999999876543211 1224 9999999999643 235 9999999999999
Q ss_pred EEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD 175 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~ 175 (397)
++|+||||||||||+|+|+|+++ |++|+|.++|+ ++++|||||++.+++ .|++||+.++..
T Consensus 373 ~~ivG~sGsGKSTLl~~l~g~~~-----p~~G~i~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~----~tv~eni~~~~~ 443 (595)
T 2yl4_A 373 TALVGPSGSGKSTVLSLLLRLYD-----PASGTISLDGHDIRQLNPVWLRSKIGTVSQEPILFS----CSIAENIAYGAD 443 (595)
T ss_dssp EEEECCTTSSSTHHHHHHTTSSC-----CSEEEEEETTEETTTBCHHHHHHSEEEECSSCCCCS----SBHHHHHHTTSS
T ss_pred EEEECCCCCCHHHHHHHHhcCcC-----CCCcEEEECCEEhhhCCHHHHHhceEEEccCCcccC----CCHHHHHhhcCC
Confidence 99999999999999999999999 99999999997 246999999999885 599999999754
Q ss_pred C-hhhHHHHHHHHHHHCCCccc------------ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcc
Q 015952 176 A-SDNINMIKLWIMEGVRHGEL------------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS 242 (397)
Q Consensus 176 ~-~~~~~~~~~~ll~~vgl~~~------------~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~ 242 (397)
. ....++.+.++++.+++.+. ..++.+||||||||++|||||+++|++| +||||| ++
T Consensus 444 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~~~~~~~~LSgGq~qrv~iAral~~~p~il--------llDEpt--s~ 513 (595)
T 2yl4_A 444 DPSSVTAEEIQRVAEVANAVAFIRNFPQGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKIL--------LLDEAT--SA 513 (595)
T ss_dssp STTTSCHHHHHHHHHHTTCHHHHHTSSSGGGCBCSSSSCCCCHHHHHHHHHHHHHHHCCSEE--------EEECCC--SS
T ss_pred CccccCHHHHHHHHHHcCCHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHHcCCCEE--------EEECcc--cC
Confidence 2 11223556778888876321 2235789999999999999999999999 555556 77
Q ss_pred ccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 243 MEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 243 LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
||+.... ...+.+.++ .+|+|+|+|||+ ...+.|||| ++|++|++++.|++++++..
T Consensus 514 LD~~~~~--~i~~~l~~~--------~~~~tvi~itH~~~~~~~~d~i-~~l~~G~i~~~g~~~~l~~~ 571 (595)
T 2yl4_A 514 LDAENEY--LVQEALDRL--------MDGRTVLVIAHRLSTIKNANMV-AVLDQGKITEYGKHEELLSK 571 (595)
T ss_dssp CCHHHHH--HHHHHHHHH--------HTTSEEEEECCCHHHHHHSSEE-EEEETTEEEEEECSCC----
T ss_pred CCHHHHH--HHHHHHHHH--------hcCCEEEEEecCHHHHHcCCEE-EEEECCEEEEECCHHHHHhC
Confidence 7765443 334444433 248999999996 444679999 57999999999999999864
No 40
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5e-44 Score=379.50 Aligned_cols=238 Identities=12% Similarity=0.192 Sum_probs=185.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhccccccccC-------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEE
Q 015952 36 GSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR-------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLL 108 (397)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaL 108 (397)
.....+..++....+.+|+.++++.+++.... ....++++||+|+|+++.++ |+|+||+|++||+++|
T Consensus 312 ~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~-----l~~isl~i~~G~~~~i 386 (598)
T 3qf4_B 312 ELSNQFNMIQMALASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPV-----LKDITFHIKPGQKVAL 386 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCCCCCCSSCCCCCSCCCCEEEEEEECCSSSSSCS-----CCSEEEECCTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCCeEEEEEEEEECCCCCcc-----ccceEEEEcCCCEEEE
Confidence 34456667777888999999999876654321 12359999999999654434 9999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChh
Q 015952 109 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 178 (397)
Q Consensus 109 vGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~ 178 (397)
+||||||||||+|+|+|+++ |++|+|.++|. ++++|||||++.+++ .|++||+.++.....
T Consensus 387 vG~sGsGKSTll~~l~g~~~-----p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~----~tv~eni~~~~~~~~ 457 (598)
T 3qf4_B 387 VGPTGSGKTTIVNLLMRFYD-----VDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFS----TTVKENLKYGNPGAT 457 (598)
T ss_dssp ECCTTSSTTHHHHHHTTSSC-----CSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCS----SBHHHHHHSSSTTCC
T ss_pred ECCCCCcHHHHHHHHhcCcC-----CCCeEEEECCEEhhhCCHHHHHhceEEEeCCCcccc----ccHHHHHhcCCCCCC
Confidence 99999999999999999999 99999999997 357999999999886 599999999754111
Q ss_pred hHHHHHHHHHHHCCCccc-c-----------cCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccccc
Q 015952 179 NINMIKLWIMEGVRHGEL-V-----------IRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGD 246 (397)
Q Consensus 179 ~~~~~~~~ll~~vgl~~~-~-----------~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~ 246 (397)
++.+.++++.+++.+. . .++.+||||||||++|||||+++|++| +||||| ++||+.
T Consensus 458 --~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~il--------llDEpt--s~LD~~ 525 (598)
T 3qf4_B 458 --DEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKIL--------ILDEAT--SNVDTK 525 (598)
T ss_dssp --TTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEE--------EECCCC--TTCCHH
T ss_pred --HHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEE--------EEECCc--cCCCHH
Confidence 1223445555555221 2 223689999999999999999999999 555556 777765
Q ss_pred chhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 247 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 247 ~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
++. ...+.+.++ .+|+|+|+|||+ ...+.|||| ++|++|++++.|++++++..
T Consensus 526 ~~~--~i~~~l~~~--------~~~~t~i~itH~l~~~~~~d~i-~~l~~G~i~~~g~~~~l~~~ 579 (598)
T 3qf4_B 526 TEK--SIQAAMWKL--------MEGKTSIIIAHRLNTIKNADLI-IVLRDGEIVEMGKHDELIQK 579 (598)
T ss_dssp HHH--HHHHHHHHH--------HTTSEEEEESCCTTHHHHCSEE-EEECSSSEEECSCHHHHHHT
T ss_pred HHH--HHHHHHHHH--------cCCCEEEEEecCHHHHHcCCEE-EEEECCEEEEECCHHHHHhC
Confidence 544 233444332 358999999996 445669999 57999999999999999865
No 41
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=2.7e-44 Score=335.91 Aligned_cols=193 Identities=17% Similarity=0.245 Sum_probs=157.6
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
..+|+++||+++|++ .+ |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|..
T Consensus 8 ~~~l~~~~ls~~y~~--~i-----l~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g~~~~~ 75 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK--PV-----LERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK-----PLKGEIIYNGVPITK 75 (214)
T ss_dssp -CEEEEEEEEEESSS--EE-----EEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC-----CSEEEEEETTEEGGG
T ss_pred CceEEEEEEEEEeCC--eE-----EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCCeEEEECCEEhhh
Confidence 468999999999964 46 999999999999999999999999999999999999 999999999974
Q ss_pred --CcEEEEecCCCCCCCCCCccHHHHHhcCCC--C-hhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 015952 146 --GDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--A-SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 220 (397)
Q Consensus 146 --~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~-~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~ 220 (397)
+.+||+||++.++. .+||+||+.++.. . ..+ ++++.++++.+++....+++.+||||||||++|||||+.+
T Consensus 76 ~~~~i~~v~q~~~~~~---~~tv~enl~~~~~~~~~~~~-~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~ 151 (214)
T 1sgw_A 76 VKGKIFFLPEEIIVPR---KISVEDYLKAVASLYGVKVN-KNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVN 151 (214)
T ss_dssp GGGGEEEECSSCCCCT---TSBHHHHHHHHHHHTTCCCC-HHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSC
T ss_pred hcCcEEEEeCCCcCCC---CCCHHHHHHHHHHhcCCchH-HHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhC
Confidence 57999999998876 6899999987532 1 122 5678889999999433666889999999999999999999
Q ss_pred CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEE
Q 015952 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGEL 298 (397)
Q Consensus 221 P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~i 298 (397)
|++| +||||| ++||+.... ...+.+.++ .++|+|||++||+ .+..+|||+ + +..|+|
T Consensus 152 p~ll--------lLDEPt--s~LD~~~~~--~l~~~l~~~-------~~~g~tiiivtHd~~~~~~~~d~v-~-~~~~~~ 210 (214)
T 1sgw_A 152 AEIY--------VLDDPV--VAIDEDSKH--KVLKSILEI-------LKEKGIVIISSREELSYCDVNENL-H-KYSTKI 210 (214)
T ss_dssp CSEE--------EEESTT--TTSCTTTHH--HHHHHHHHH-------HHHHSEEEEEESSCCTTSSEEEEG-G-GGBC--
T ss_pred CCEE--------EEECCC--cCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHHHHHhCCEE-E-EeCCcc
Confidence 9999 555556 788866554 344444443 1348899999995 888999999 5 777766
No 42
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=3.6e-43 Score=401.38 Aligned_cols=245 Identities=15% Similarity=0.156 Sum_probs=196.5
Q ss_pred cchhhhhHHHHHHHHHHHHHHHHHhccccccccC--------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcE
Q 015952 34 DEGSRDSWDSLVDQRRRDAVFREVLQSYDQLRTR--------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS 105 (397)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~ 105 (397)
......++..++....+.+|+.++++.+++.+.. ...-|+++||+|+|+.+....+ |+|+||+|++||.
T Consensus 1031 l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~V---L~~isl~I~~Ge~ 1107 (1321)
T 4f4c_A 1031 LGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEI---LKGLSFSVEPGQT 1107 (1321)
T ss_dssp TTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCS---EEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCcc---ccceeEEECCCCE
Confidence 3445566777888888999999999887664331 1236999999999964321122 9999999999999
Q ss_pred EEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD 175 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~ 175 (397)
+|||||||||||||+++|.|+++ |++|+|.+||. |++|+||||+|.+|. -|++||+.++..
T Consensus 1108 vaIVG~SGsGKSTL~~lL~rl~~-----p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~----gTIreNI~~gld 1178 (1321)
T 4f4c_A 1108 LALVGPSGCGKSTVVALLERFYD-----TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD----CSIAENIIYGLD 1178 (1321)
T ss_dssp EEEECSTTSSTTSHHHHHTTSSC-----CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS----EEHHHHHSSSSC
T ss_pred EEEECCCCChHHHHHHHHhcCcc-----CCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeC----ccHHHHHhccCC
Confidence 99999999999999999999999 99999999998 578999999999997 699999999865
Q ss_pred ChhhHHHHHHHHHHHCCCccc------------ccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccc
Q 015952 176 ASDNINMIKLWIMEGVRHGEL------------VIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 243 (397)
Q Consensus 176 ~~~~~~~~~~~ll~~vgl~~~------------~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~L 243 (397)
+.+...+.+.++++..++.+. ..+...||||||||+||||||+++|+|| +||||| |+|
T Consensus 1179 ~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~IL--------iLDEaT--SaL 1248 (1321)
T 4f4c_A 1179 PSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKIL--------LLDEAT--SAL 1248 (1321)
T ss_dssp TTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEE--------EEESCC--CST
T ss_pred CCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEE--------EEeCcc--ccC
Confidence 333334456667777766321 2345678999999999999999999999 777777 888
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
|..++. .+.+.+ ....+|+|+|+|||+ .....|||| ++|++|+|++.|+|++++..+
T Consensus 1249 D~~tE~------~Iq~~l----~~~~~~~TvI~IAHRLsTi~~aD~I-~Vld~G~IvE~Gth~eLl~~~ 1306 (1321)
T 4f4c_A 1249 DTESEK------VVQEAL----DRAREGRTCIVIAHRLNTVMNADCI-AVVSNGTIIEKGTHTQLMSEK 1306 (1321)
T ss_dssp TSHHHH------HHHHHH----TTTSSSSEEEEECSSSSTTTTCSEE-EEESSSSEEEEECHHHHHHCC
T ss_pred CHHHHH------HHHHHH----HHHcCCCEEEEeccCHHHHHhCCEE-EEEECCEEEEECCHHHHHhCC
Confidence 877665 222222 222479999999997 778889999 579999999999999999764
No 43
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.9e-43 Score=335.20 Aligned_cols=199 Identities=15% Similarity=0.214 Sum_probs=160.3
Q ss_pred eEEEEeEEEEECCC---ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--
Q 015952 71 LTDAKNKILSYTPG---AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~---~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
|++++|++++|+++ ..+ |+++||+|+ |++++|+||||||||||+|+|+|++ |++|+|.++|..
T Consensus 1 ml~~~~l~~~y~~~~~~~~i-----l~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~------p~~G~I~~~g~~~~ 68 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFS-----LENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL------PYSGNIFINGMEVR 68 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEE-----EEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS------CCEEEEEETTEEGG
T ss_pred CEEEEEEEEEeCCCCcccee-----EEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC------CCCcEEEECCEECc
Confidence 58999999999531 334 999999999 9999999999999999999999987 478999999963
Q ss_pred -----CcEE-EEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-cc-ccCCCCCChHHHHHHHHHHHH
Q 015952 146 -----GDGT-YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-EL-VIRRSDSSSLRNRMRCKAHKI 217 (397)
Q Consensus 146 -----~~ig-~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~-~~~~~~lSGGqkQRvaIArAL 217 (397)
+++| |+||++.+ . +|+.||+.++........+++.++++.+++. +. .+++.+|||||||||+|||||
T Consensus 69 ~~~~~~~i~~~v~Q~~~l-~----~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL 143 (263)
T 2pjz_A 69 KIRNYIRYSTNLPEAYEI-G----VTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLAL 143 (263)
T ss_dssp GCSCCTTEEECCGGGSCT-T----SBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHH
T ss_pred chHHhhheEEEeCCCCcc-C----CcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 4799 99999877 4 7999999875321122245678899999996 54 567889999999999999999
Q ss_pred cCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc-EEEEEee
Q 015952 218 GCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD-RARIRTY 294 (397)
Q Consensus 218 ~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD-rI~v~l~ 294 (397)
+.+|++| +||||| ++||+.... ...+.+.++ .+ |||++||+ .+.++|| |+ ++|+
T Consensus 144 ~~~p~ll--------lLDEPt--s~LD~~~~~--~l~~~L~~~--------~~--tviivtHd~~~~~~~~d~~i-~~l~ 200 (263)
T 2pjz_A 144 ASQPEIV--------GLDEPF--ENVDAARRH--VISRYIKEY--------GK--EGILVTHELDMLNLYKEYKA-YFLV 200 (263)
T ss_dssp HTCCSEE--------EEECTT--TTCCHHHHH--HHHHHHHHS--------CS--EEEEEESCGGGGGGCTTSEE-EEEE
T ss_pred HhCCCEE--------EEECCc--cccCHHHHH--HHHHHHHHh--------cC--cEEEEEcCHHHHHHhcCceE-EEEE
Confidence 9999999 555556 777754433 233333322 22 99999995 6788999 99 5799
Q ss_pred CCEEeeeCCcccccC
Q 015952 295 LGELLGIPPAKQIFD 309 (397)
Q Consensus 295 ~G~iv~~g~~~el~~ 309 (397)
+|++++.|++++++.
T Consensus 201 ~G~i~~~g~~~~l~~ 215 (263)
T 2pjz_A 201 GNRLQGPISVSELLE 215 (263)
T ss_dssp TTEEEEEEEHHHHHT
T ss_pred CCEEEEecCHHHHHh
Confidence 999999999988874
No 44
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2e-41 Score=386.93 Aligned_cols=238 Identities=13% Similarity=0.180 Sum_probs=190.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhccccccccC---------CCCeEEEEeEEEEECCC--ceEeeccCceeeeEEEcCCcE
Q 015952 37 SRDSWDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPG--AWIENVGGMTLSDYDVPKTTS 105 (397)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~lel~nvs~~Y~~~--~~v~~~~~L~~isl~I~~Ge~ 105 (397)
....+..++.++.+.+|+.++++.+++.+.. ...-|+++||+|+|++. .++ |+|+||+|++|++
T Consensus 372 ~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~v-----L~~isl~i~~G~~ 446 (1321)
T 4f4c_A 372 AGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPI-----LRGMNLRVNAGQT 446 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCS-----EEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCce-----eeceEEeecCCcE
Confidence 3445667778888999999999987654331 12359999999999643 234 9999999999999
Q ss_pred EEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD 175 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~ 175 (397)
+|||||||||||||+++|.|+++ |++|+|.+||. +++||||+|+|.+|+ -|++||+.++..
T Consensus 447 vaivG~sGsGKSTll~ll~~~~~-----~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~----~TI~eNI~~g~~ 517 (1321)
T 4f4c_A 447 VALVGSSGCGKSTIISLLLRYYD-----VLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN----CTIEENISLGKE 517 (1321)
T ss_dssp EEEEECSSSCHHHHHHHHTTSSC-----CSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS----EEHHHHHHTTCT
T ss_pred EEEEecCCCcHHHHHHHhccccc-----cccCcccCCCccchhccHHHHhhcccccCCcceeeC----CchhHHHhhhcc
Confidence 99999999999999999999999 99999999997 457999999999996 699999999865
Q ss_pred ChhhHHHHHHHHHHHCCCc------------ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccc
Q 015952 176 ASDNINMIKLWIMEGVRHG------------ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 243 (397)
Q Consensus 176 ~~~~~~~~~~~ll~~vgl~------------~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~L 243 (397)
... ++.+.++++..+++ ....+...||||||||+|||||++++|+|| +||||| |+|
T Consensus 518 ~~~--~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~Il--------iLDE~t--SaL 585 (1321)
T 4f4c_A 518 GIT--REEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKIL--------LLDEAT--SAL 585 (1321)
T ss_dssp TCC--HHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEE--------EEESTT--TTS
T ss_pred cch--HHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEE--------EEeccc--ccC
Confidence 211 22344444444431 123457789999999999999999999999 667777 899
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
|+.++. ...+.+.++ .+|+|+|+|||+ ...+.||+| ++|++|+|++.|+++|++...
T Consensus 586 D~~te~--~i~~~l~~~--------~~~~T~iiiaHrls~i~~aD~I-ivl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 586 DAESEG--IVQQALDKA--------AKGRTTIIIAHRLSTIRNADLI-ISCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp CTTTHH--HHHHHHHHH--------HTTSEEEEECSCTTTTTTCSEE-EEEETTEEEEEECHHHHHTTT
T ss_pred CHHHHH--HHHHHHHHH--------hCCCEEEEEcccHHHHHhCCEE-EEeeCCeeeccCCHHHHHHhh
Confidence 987644 233444333 368999999997 788999999 579999999999999998653
No 45
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.3e-41 Score=328.55 Aligned_cols=197 Identities=12% Similarity=0.068 Sum_probs=140.3
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
.++++++||++.| ..+ |+++||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++| ++
T Consensus 38 ~~~l~~~~l~~~~---~~v-----l~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~~g---~i 101 (290)
T 2bbs_A 38 DDSLSFSNFSLLG---TPV-----LKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE-----PSEGKIKHSG---RI 101 (290)
T ss_dssp ------------C---CCS-----EEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC-----EEEEEEECCS---CE
T ss_pred CceEEEEEEEEcC---ceE-----EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCcEEEECC---EE
Confidence 3579999999864 224 999999999999999999999999999999999999 9999999998 59
Q ss_pred EEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-c-----------ccCCCCCChHHHHHHHHHHH
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-L-----------VIRRSDSSSLRNRMRCKAHK 216 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~-----------~~~~~~lSGGqkQRvaIArA 216 (397)
||+||++.+++ .||+||+. +..... ....++++.+++.+ . ..++.+|||||||||+||||
T Consensus 102 ~~v~Q~~~l~~----~tv~enl~-~~~~~~---~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAra 173 (290)
T 2bbs_A 102 SFCSQNSWIMP----GTIKENII-GVSYDE---YRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARA 173 (290)
T ss_dssp EEECSSCCCCS----SBHHHHHH-TTCCCH---HHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHH
T ss_pred EEEeCCCccCc----ccHHHHhh-Ccccch---HHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHH
Confidence 99999998875 49999998 532111 12233445555521 1 12347899999999999999
Q ss_pred HcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeC
Q 015952 217 IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYL 295 (397)
Q Consensus 217 L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~ 295 (397)
|+.+|++| +||||| ++||+... +.+.+.+. ....+|+|||++||+ .....|||+ ++|++
T Consensus 174 L~~~p~ll--------lLDEPt--s~LD~~~~------~~i~~~ll---~~~~~~~tviivtHd~~~~~~~d~i-~~l~~ 233 (290)
T 2bbs_A 174 VYKDADLY--------LLDSPF--GYLDVLTE------KEIFESCV---CKLMANKTRILVTSKMEHLKKADKI-LILHE 233 (290)
T ss_dssp HHSCCSEE--------EEESTT--TTCCHHHH------HHHHHHCC---CCCTTTSEEEEECCCHHHHHHSSEE-EEEET
T ss_pred HHCCCCEE--------EEECCc--ccCCHHHH------HHHHHHHH---HHhhCCCEEEEEecCHHHHHcCCEE-EEEEC
Confidence 99999999 555555 77774433 34444321 112358999999996 334569999 57999
Q ss_pred CEEeeeCCcccccC
Q 015952 296 GELLGIPPAKQIFD 309 (397)
Q Consensus 296 G~iv~~g~~~el~~ 309 (397)
|+++..|++++++.
T Consensus 234 G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 234 GSSYFYGTFSELQN 247 (290)
T ss_dssp TEEEEEECHHHHHH
T ss_pred CeEEEeCCHHHHhh
Confidence 99999999988753
No 46
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1.1e-40 Score=349.88 Aligned_cols=203 Identities=15% Similarity=0.157 Sum_probs=160.5
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
.++++++|+++.|+ ... |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+ ...+
T Consensus 285 ~~~l~~~~l~~~~~--~~~-----l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~i~~---~~~i 349 (538)
T 1yqt_A 285 ETLVTYPRLVKDYG--SFR-----LEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKIEW---DLTV 349 (538)
T ss_dssp CEEEEECCEEEEET--TEE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBCCCCC---CCCE
T ss_pred CeEEEEeeEEEEEC--CEE-----EEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCeEEEE---CceE
Confidence 35799999999995 223 889999999999999999999999999999999999 99999987 3579
Q ss_pred EEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeec
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllD 227 (397)
||+||++..+. .+||.+++...........+.+.++++.+++. ...+++.+|||||||||+|||||+.+|++|
T Consensus 350 ~~v~Q~~~~~~---~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lL--- 423 (538)
T 1yqt_A 350 AYKPQYIKADY---EGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIY--- 423 (538)
T ss_dssp EEECSSCCCCC---SSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEE---
T ss_pred EEEecCCcCCC---CCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEE---
Confidence 99999987644 68998887643111111134677889999994 446678899999999999999999999999
Q ss_pred cccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeC--CEEeeeCC
Q 015952 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYL--GELLGIPP 303 (397)
Q Consensus 228 EP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~--G~iv~~g~ 303 (397)
+||||| ++||..... ...+.+.++. .+.|+|||+|||| ++..+|||| ++|++ |+++..|+
T Consensus 424 -----lLDEPt--~~LD~~~~~--~i~~~l~~l~------~~~g~tvi~vsHd~~~~~~~~drv-~vl~~~~~~~~~~g~ 487 (538)
T 1yqt_A 424 -----LLDEPS--AYLDVEQRL--AVSRAIRHLM------EKNEKTALVVEHDVLMIDYVSDRL-MVFEGEPGKYGRALP 487 (538)
T ss_dssp -----EEECTT--TTCCHHHHH--HHHHHHHHHH------HHHTCEEEEECSCHHHHHHHCSEE-EEEEEETTTEEEECC
T ss_pred -----EEeCCc--ccCCHHHHH--HHHHHHHHHH------HhCCCEEEEEeCCHHHHHHhCCEE-EEEeCCcceEeecCC
Confidence 666666 777755443 3334443331 1358999999995 888999999 56886 78888899
Q ss_pred ccccc
Q 015952 304 AKQIF 308 (397)
Q Consensus 304 ~~el~ 308 (397)
+++++
T Consensus 488 ~~~~~ 492 (538)
T 1yqt_A 488 PMGMR 492 (538)
T ss_dssp CEEHH
T ss_pred HHHHH
Confidence 98775
No 47
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=2.1e-40 Score=352.13 Aligned_cols=203 Identities=16% Similarity=0.177 Sum_probs=161.6
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEE
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig 149 (397)
.+++++|++++|++ .. |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+ ...+|
T Consensus 356 ~~l~~~~l~~~~~~--~~-----l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~-----p~~G~I~~---~~~i~ 420 (607)
T 3bk7_A 356 TLVEYPRLVKDYGS--FK-----LEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE-----PTEGKVEW---DLTVA 420 (607)
T ss_dssp EEEEECCEEEECSS--CE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC-----CSBSCCCC---CCCEE
T ss_pred eEEEEeceEEEecc--eE-----EEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCceEEEE---eeEEE
Confidence 47999999999953 23 889999999999999999999999999999999999 99999987 35799
Q ss_pred EEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCCeEeecc
Q 015952 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (397)
Q Consensus 150 ~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDE 228 (397)
|+||++..+. .+||.+++...........+++.++++.+++.+ ..+++.+|||||||||+|||||+.+|++|
T Consensus 421 ~v~Q~~~~~~---~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lL---- 493 (607)
T 3bk7_A 421 YKPQYIKAEY---EGTVYELLSKIDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIY---- 493 (607)
T ss_dssp EECSSCCCCC---SSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEE----
T ss_pred EEecCccCCC---CCcHHHHHHhhhccCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEE----
Confidence 9999987654 689999886531111112356778999999944 46678899999999999999999999999
Q ss_pred ccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeC--CEEeeeCCc
Q 015952 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYL--GELLGIPPA 304 (397)
Q Consensus 229 P~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~--G~iv~~g~~ 304 (397)
+||||| ++||..... ...+.+.++. .+.|+|||+|||| ++..+|||+ ++|++ |+++..|++
T Consensus 494 ----lLDEPt--~~LD~~~~~--~l~~~l~~l~------~~~g~tvi~vsHd~~~~~~~adrv-~vl~~~~g~~~~~g~p 558 (607)
T 3bk7_A 494 ----LLDEPS--AYLDVEQRL--AVSRAIRHLM------EKNEKTALVVEHDVLMIDYVSDRL-IVFEGEPGRHGRALPP 558 (607)
T ss_dssp ----EEECTT--TTCCHHHHH--HHHHHHHHHH------HHTTCEEEEECSCHHHHHHHCSEE-EEEEEETTTEEEECCC
T ss_pred ----EEeCCc--cCCCHHHHH--HHHHHHHHHH------HhCCCEEEEEeCCHHHHHHhCCEE-EEEcCCcceEEecCCH
Confidence 556666 777755443 3344444331 2368999999995 888899999 56885 888888998
Q ss_pred ccccC
Q 015952 305 KQIFD 309 (397)
Q Consensus 305 ~el~~ 309 (397)
++++.
T Consensus 559 ~~~~~ 563 (607)
T 3bk7_A 559 MGMRE 563 (607)
T ss_dssp EEHHH
T ss_pred HHHHh
Confidence 87753
No 48
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=6.1e-40 Score=373.91 Aligned_cols=240 Identities=13% Similarity=0.165 Sum_probs=181.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHhccccccccC---------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEE
Q 015952 38 RDSWDSLVDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLL 108 (397)
Q Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaL 108 (397)
...+..++..+.+..|+.++++.+++.+.. ....|+++||+|+|+++....+ |+|+||+|++||++||
T Consensus 345 ~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~v---L~~isl~i~~G~~~~i 421 (1284)
T 3g5u_A 345 SPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI---LKGLNLKVKSGQTVAL 421 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCS---EEEEEEEECTTCEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcc---eecceEEEcCCCEEEE
Confidence 345566777788899999999876653220 1235999999999964321122 9999999999999999
Q ss_pred ECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCC--C
Q 015952 109 IGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD--A 176 (397)
Q Consensus 109 vGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~--~ 176 (397)
|||||||||||+++|+|+++ |++|+|.++|. ++.||||+|++.++. .||+||+.++.. .
T Consensus 422 vG~sGsGKSTl~~ll~g~~~-----~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~----~ti~eNi~~g~~~~~ 492 (1284)
T 3g5u_A 422 VGNSGCGKSTTVQLMQRLYD-----PLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFA----TTIAENIRYGREDVT 492 (1284)
T ss_dssp ECCSSSSHHHHHHHTTTSSC-----CSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCS----SCHHHHHHHHCSSCC
T ss_pred ECCCCCCHHHHHHHHhCCCC-----CCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCC----ccHHHHHhcCCCCCC
Confidence 99999999999999999999 99999999997 357999999999986 599999999864 2
Q ss_pred hhhHHHHH-----HHHHHHCCCc---ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccch
Q 015952 177 SDNINMIK-----LWIMEGVRHG---ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD 248 (397)
Q Consensus 177 ~~~~~~~~-----~~ll~~vgl~---~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~ 248 (397)
.++..+.+ .+.++.+..+ ....++.+||||||||++|||||+.+|+|| +||||| ++||+.++
T Consensus 493 ~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~il--------iLDEpt--s~LD~~~~ 562 (1284)
T 3g5u_A 493 MDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKIL--------LLDEAT--SALDTESE 562 (1284)
T ss_dssp HHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEE--------EEESTT--CSSCHHHH
T ss_pred HHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEE--------EEECCC--CCCCHHHH
Confidence 22222211 1223333221 123457789999999999999999999999 666666 78886544
Q ss_pred hhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCC
Q 015952 249 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDI 310 (397)
Q Consensus 249 ~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~ 310 (397)
. ...+.+.+ ..+|+|+|+|||+ .....|||| ++|++|++++.|++++++..
T Consensus 563 ~--~i~~~l~~--------~~~~~t~i~itH~l~~i~~~d~i-~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 563 A--VVQAALDK--------AREGRTTIVIAHRLSTVRNADVI-AGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp H--HHHHHHHH--------HHTTSEEEEECSCHHHHTTCSEE-EECSSSCCCCEECHHHHHHT
T ss_pred H--HHHHHHHH--------HcCCCEEEEEecCHHHHHcCCEE-EEEECCEEEEECCHHHHHhC
Confidence 3 22233322 2468999999996 555669999 57999999999999998754
No 49
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=7.6e-40 Score=373.14 Aligned_cols=234 Identities=12% Similarity=0.175 Sum_probs=177.7
Q ss_pred HHHHHHHHHHHHHhccccccccC---------CCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCc
Q 015952 45 VDQRRRDAVFREVLQSYDQLRTR---------IGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSG 115 (397)
Q Consensus 45 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsG 115 (397)
+....+..|+.++++.+++.... ....++++||+|+|+++....+ |+|+||+|++||++||+||||||
T Consensus 995 ~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~---l~~vsl~i~~Ge~v~ivG~sGsG 1071 (1284)
T 3g5u_A 995 AKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPV---LQGLSLEVKKGQTLALVGSSGCG 1071 (1284)
T ss_dssp THHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCS---BSSCCEEECSSSEEEEECSSSTT
T ss_pred HHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCee---ecceeEEEcCCCEEEEECCCCCC
Confidence 45566788889988876653221 1235999999999964321112 99999999999999999999999
Q ss_pred HHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHH
Q 015952 116 KSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKL 185 (397)
Q Consensus 116 KSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~ 185 (397)
||||+++|+|+++ |++|+|.++|. ++++|||||++.++. .|++||+.++........+.+.
T Consensus 1072 KSTl~~~l~g~~~-----p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~----~ti~eNi~~~~~~~~~~~~~i~ 1142 (1284)
T 3g5u_A 1072 KSTVVQLLERFYD-----PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD----CSIAENIAYGDNSRVVSYEEIV 1142 (1284)
T ss_dssp HHHHHHHHTTSSC-----CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCS----SBHHHHHTCCCSSCCCCHHHHH
T ss_pred HHHHHHHHhcCcC-----CCCCEEEECCEEcccCCHHHHHhceEEECCCCcccc----ccHHHHHhccCCCCCCCHHHHH
Confidence 9999999999999 99999999997 467999999998875 6999999987542111112233
Q ss_pred HHHHHCCCcc------------cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHH
Q 015952 186 WIMEGVRHGE------------LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQY 253 (397)
Q Consensus 186 ~ll~~vgl~~------------~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~ 253 (397)
+.++..++.+ ...++.+|||||||||+|||||+.+|++| +||||| ++||..++. ..
T Consensus 1143 ~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iL--------iLDEpT--s~lD~~~~~--~i 1210 (1284)
T 3g5u_A 1143 RAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHIL--------LLDEAT--SALDTESEK--VV 1210 (1284)
T ss_dssp HHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSE--------EEESCS--SSCCHHHHH--HH
T ss_pred HHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEE--------EEeCCc--ccCCHHHHH--HH
Confidence 3444444311 12345689999999999999999999999 666667 788865544 23
Q ss_pred HHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 254 NQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 254 ~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
.+.+.+. .+|+|||+|||| .....|||| ++|++|++++.|++++++...
T Consensus 1211 ~~~l~~~--------~~~~tvi~isH~l~~i~~~dri-~vl~~G~i~~~g~~~~l~~~~ 1260 (1284)
T 3g5u_A 1211 QEALDKA--------REGRTCIVIAHRLSTIQNADLI-VVIQNGKVKEHGTHQQLLAQK 1260 (1284)
T ss_dssp HHHHHHH--------SSSSCEEEECSCTTGGGSCSEE-EEEETBEEEEEECHHHHHHSC
T ss_pred HHHHHHh--------CCCCEEEEEecCHHHHHcCCEE-EEEECCEEEEECCHHHHHhCC
Confidence 3333322 468999999996 445679999 579999999999999998654
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.8e-40 Score=342.98 Aligned_cols=200 Identities=11% Similarity=0.029 Sum_probs=156.4
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEE
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig 149 (397)
++++++|+++.|++ .. |+++||+|++||+++|+||||||||||+|+|+|+++ |++|+|.+++. .++
T Consensus 268 ~~l~~~~l~~~~~~--~~-----l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~~~--~i~ 333 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD--FQ-----LVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT-----ADEGSVTPEKQ--ILS 333 (538)
T ss_dssp EEEEECCEEEEETT--EE-----EEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC-----CSBCCEESSCC--CEE
T ss_pred ceEEEcceEEEECC--EE-----EEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCcEEEECCe--eeE
Confidence 47899999999953 23 888899999999999999999999999999999999 99999998864 799
Q ss_pred EEecCCCCCCCCCCccHHHHHhcCCCCh-hhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeec
Q 015952 150 YFLQEYTIPRGSNSFSLYDTRSLSDDAS-DNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKV 227 (397)
Q Consensus 150 ~v~Q~~~l~~~~~~ltv~eni~~~~~~~-~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllD 227 (397)
|++|+..... ..||.+|+.+..... ......+.++++.+++. ...+++.+|||||||||+|||||+.+|++|
T Consensus 334 ~~~q~~~~~~---~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lL--- 407 (538)
T 3ozx_A 334 YKPQRIFPNY---DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLY--- 407 (538)
T ss_dssp EECSSCCCCC---SSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEE---
T ss_pred eechhccccc---CCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEE---
Confidence 9999876543 579999987643211 12234567889999994 456778999999999999999999999999
Q ss_pred cccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeC--CEEeeeCC
Q 015952 228 NFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYL--GELLGIPP 303 (397)
Q Consensus 228 EP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~--G~iv~~g~ 303 (397)
+||||| ++||..... ...+.+.++. .+.|+|||+|||| ++..+|||| ++|++ |.....++
T Consensus 408 -----lLDEPT--~gLD~~~~~--~i~~~l~~l~------~~~g~tvi~vsHdl~~~~~~aDri-~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 408 -----VLDQPS--SYLDVEERY--IVAKAIKRVT------RERKAVTFIIDHDLSIHDYIADRI-IVFKGEPEKAGLATS 471 (538)
T ss_dssp -----EEESTT--TTCCHHHHH--HHHHHHHHHH------HHTTCEEEEECSCHHHHHHHCSEE-EEEEEETTTEEEECC
T ss_pred -----EEeCCc--cCCCHHHHH--HHHHHHHHHH------HhCCCEEEEEeCCHHHHHHhCCEE-EEEeCCcceeccCCC
Confidence 666666 777755443 3444444431 2468999999995 888999999 56875 44444455
Q ss_pred cc
Q 015952 304 AK 305 (397)
Q Consensus 304 ~~ 305 (397)
+.
T Consensus 472 ~~ 473 (538)
T 3ozx_A 472 PV 473 (538)
T ss_dssp CE
T ss_pred hH
Confidence 43
No 51
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-39 Score=341.95 Aligned_cols=200 Identities=11% Similarity=0.084 Sum_probs=155.5
Q ss_pred EeEEEEECCCceEeeccCceeeeEEEcCC-----cEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEE
Q 015952 75 KNKILSYTPGAWIENVGGMTLSDYDVPKT-----TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGT 149 (397)
Q Consensus 75 ~nvs~~Y~~~~~v~~~~~L~~isl~I~~G-----e~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig 149 (397)
++++++|+....+ ++++||++.+| |+++|+||||||||||+|+|+|+++ |++|+.. ....++
T Consensus 350 ~~~~~~y~~~~~~-----l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~-----p~~G~~~---~~~~i~ 416 (608)
T 3j16_B 350 ASRAFSYPSLKKT-----QGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK-----PDEGQDI---PKLNVS 416 (608)
T ss_dssp SSSCCEECCEEEE-----CSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC-----CSBCCCC---CSCCEE
T ss_pred cceeEEecCcccc-----cCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC-----CCCCcCc---cCCcEE
Confidence 6678889643323 89999999999 7899999999999999999999999 9999842 245799
Q ss_pred EEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeecc
Q 015952 150 YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (397)
Q Consensus 150 ~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDE 228 (397)
|++|+..... ..|+.+++.............+.++++.+++. ...+++.+|||||||||+|||||+.+|++|
T Consensus 417 ~~~q~~~~~~---~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lL---- 489 (608)
T 3j16_B 417 MKPQKIAPKF---PGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIY---- 489 (608)
T ss_dssp EECSSCCCCC---CSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEE----
T ss_pred EecccccccC---CccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEE----
Confidence 9999976543 46999987653321111234567889999994 456778999999999999999999999999
Q ss_pred ccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeC--CEEeeeCCc
Q 015952 229 FVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYL--GELLGIPPA 304 (397)
Q Consensus 229 P~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~--G~iv~~g~~ 304 (397)
+||||| ++||..... ...+.+.++. .+.|+|||+|||| ++..+|||| ++|++ |+++..|+|
T Consensus 490 ----lLDEPT--~gLD~~~~~--~i~~ll~~l~------~~~g~tviivtHdl~~~~~~aDrv-ivl~~~~g~~~~~g~p 554 (608)
T 3j16_B 490 ----LIDEPS--AYLDSEQRI--ICSKVIRRFI------LHNKKTAFIVEHDFIMATYLADKV-IVFEGIPSKNAHARAP 554 (608)
T ss_dssp ----EECCTT--TTCCHHHHH--HHHHHHHHHH------HHHTCEEEEECSCHHHHHHHCSEE-EECEEETTTEEECCCC
T ss_pred ----EEECCC--CCCCHHHHH--HHHHHHHHHH------HhCCCEEEEEeCCHHHHHHhCCEE-EEEeCCCCeEEecCCh
Confidence 556666 777755443 3344444431 2358999999995 888999999 56886 899999999
Q ss_pred ccccC
Q 015952 305 KQIFD 309 (397)
Q Consensus 305 ~el~~ 309 (397)
++++.
T Consensus 555 ~~~~~ 559 (608)
T 3j16_B 555 ESLLT 559 (608)
T ss_dssp EEHHH
T ss_pred HHHhh
Confidence 88864
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=3.3e-37 Score=340.01 Aligned_cols=201 Identities=16% Similarity=0.127 Sum_probs=147.7
Q ss_pred CCeEEEEeEEEEECCC-ceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCc
Q 015952 69 GSLTDAKNKILSYTPG-AWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGD 147 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~-~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ 147 (397)
.++|+++|++|+|+++ .++ |+|+||+|++|++++|+||||||||||+|+|+|+++ |++|+|.++|. ..
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~i-----L~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~-----P~sG~I~~~~~-~~ 737 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQ-----ITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL-----PTSGEVYTHEN-CR 737 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCS-----EEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC-----CSEEEEEECTT-CC
T ss_pred CceEEEEeeEEEeCCCCcee-----eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCceEEEEcCc-cc
Confidence 3589999999999642 334 999999999999999999999999999999999999 99999999874 36
Q ss_pred EEEEecCCCC-----CCC--------------------------C-----------------------------------
Q 015952 148 GTYFLQEYTI-----PRG--------------------------S----------------------------------- 161 (397)
Q Consensus 148 ig~v~Q~~~l-----~~~--------------------------~----------------------------------- 161 (397)
+||++|++.. ... .
T Consensus 738 I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~ 817 (986)
T 2iw3_A 738 IAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEY 817 (986)
T ss_dssp EEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEE
T ss_pred eEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchh
Confidence 9999997410 000 0
Q ss_pred -CCccHHHHHhcCCC-------------C--------------------------hhhHHHHHHHHHHHCCCcc---ccc
Q 015952 162 -NSFSLYDTRSLSDD-------------A--------------------------SDNINMIKLWIMEGVRHGE---LVI 198 (397)
Q Consensus 162 -~~ltv~eni~~~~~-------------~--------------------------~~~~~~~~~~ll~~vgl~~---~~~ 198 (397)
..+++.||+.++.. . .....+.+.++++.+|+.. ...
T Consensus 818 e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~ 897 (986)
T 2iw3_A 818 ECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHS 897 (986)
T ss_dssp EEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHS
T ss_pred hhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCC
Confidence 01123333332210 0 0011345778999999953 356
Q ss_pred CCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEe
Q 015952 199 RRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVT 278 (397)
Q Consensus 199 ~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivT 278 (397)
++.+|||||||||+|||||+.+|++| +||||| ++||... ...+.+.+ .+.+.|||+||
T Consensus 898 ~~~~LSGGQkQRVaLArAL~~~P~LL--------LLDEPT--~gLD~~s------~~~L~~~L------~~~g~tVIiIS 955 (986)
T 2iw3_A 898 RIRGLSGGQKVKLVLAAGTWQRPHLI--------VLDEPT--NYLDRDS------LGALSKAL------KEFEGGVIIIT 955 (986)
T ss_dssp CGGGCCHHHHHHHHHHHHHTTCCSEE--------EEECGG--GTCCHHH------HHHHHHHH------HSCSSEEEEEC
T ss_pred CccccCHHHHHHHHHHHHHHhCCCEE--------EEECCc--cCCCHHH------HHHHHHHH------HHhCCEEEEEE
Confidence 78899999999999999999999999 666667 7888433 23333332 12357999999
Q ss_pred ch--hHHccccEEEEEeeCCEEeeeCC
Q 015952 279 HG--DLLSLTDRARIRTYLGELLGIPP 303 (397)
Q Consensus 279 H~--~~~~~aDrI~v~l~~G~iv~~g~ 303 (397)
|| ++..+|||+ ++|++|+++..|+
T Consensus 956 HD~e~v~~l~DrV-ivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 956 HSAEFTKNLTEEV-WAVKDGRMTPSGH 981 (986)
T ss_dssp SCHHHHTTTCCEE-ECCBTTBCCC---
T ss_pred CCHHHHHHhCCEE-EEEECCEEEEeCC
Confidence 95 778999999 5699999988775
No 53
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.3e-34 Score=310.75 Aligned_cols=192 Identities=16% Similarity=0.168 Sum_probs=134.1
Q ss_pred CceeeeEEEcCCcEEEEECCCCCcHHHHHHHHH----------------------cccCCCCCCCcccEEEECceeC---
Q 015952 92 GMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS----------------------KVFENDKFASERAQVTYNSSVG--- 146 (397)
Q Consensus 92 ~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~----------------------Gl~~~~~~~p~~G~I~i~G~~~--- 146 (397)
+|+||||+|++||+++|+||||||||||+|+|. |+.. ..|.|.+++...
T Consensus 337 ~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~------~~~~i~~~~~~~~~~ 410 (670)
T 3ux8_A 337 NLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH------LDKVIDIDQSPIGRT 410 (670)
T ss_dssp TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG------CSEEEECCSSCSCSS
T ss_pred ccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc------cCceeEeccccCCCC
Confidence 399999999999999999999999999998754 3333 235666665410
Q ss_pred ------------------------------------------------cEEEEecCCCCCCC------------------
Q 015952 147 ------------------------------------------------DGTYFLQEYTIPRG------------------ 160 (397)
Q Consensus 147 ------------------------------------------------~ig~v~Q~~~l~~~------------------ 160 (397)
..|+++|+..+++.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (670)
T 3ux8_A 411 PRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETL 490 (670)
T ss_dssp TTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHH
T ss_pred CCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhh
Confidence 12444444332210
Q ss_pred -----------CCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcCCC---CeE
Q 015952 161 -----------SNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEP---SVI 224 (397)
Q Consensus 161 -----------~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P---~iL 224 (397)
...+|+.||+.+...... ..++.+.+..+++.. ..+++.+|||||||||+|||||+.+| ++|
T Consensus 491 ~~~~~~~~~~~~~~ltv~e~l~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~ll 568 (670)
T 3ux8_A 491 EVTYKGKNIAEVLDMTVEDALDFFASIPK--IKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLY 568 (670)
T ss_dssp TCCBTTBCHHHHHTSBHHHHHHHTTTCHH--HHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEE
T ss_pred heeecCCCHHHHhhCCHHHHHHHHHHhhh--HHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEE
Confidence 013688999887654222 234567888899943 35678899999999999999999887 599
Q ss_pred eeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCE
Q 015952 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGE 297 (397)
Q Consensus 225 llDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~ 297 (397)
+||||| ++||+.... ...+.+.++ .++|+|||+|||| .+...|||| ++| ++|+
T Consensus 569 --------llDEPt--~~LD~~~~~--~i~~~l~~l-------~~~g~tvi~vtHd~~~~~~~d~i-~~l~~~~g~~~G~ 628 (670)
T 3ux8_A 569 --------ILDEPT--TGLHVDDIA--RLLDVLHRL-------VDNGDTVLVIEHNLDVIKTADYI-IDLGPEGGDRGGQ 628 (670)
T ss_dssp --------EEESTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEECCCHHHHTTCSEE-EEEESSSGGGCCE
T ss_pred --------EEeCCC--CCCCHHHHH--HHHHHHHHH-------HHCCCEEEEEeCCHHHHHhCCEE-EEecCCcCCCCCE
Confidence 556666 777755443 344444443 2459999999996 556789999 569 8999
Q ss_pred EeeeCCcccccCCC
Q 015952 298 LLGIPPAKQIFDIP 311 (397)
Q Consensus 298 iv~~g~~~el~~~~ 311 (397)
|++.|+++++...+
T Consensus 629 i~~~g~~~~~~~~~ 642 (670)
T 3ux8_A 629 IVAVGTPEEVAEVK 642 (670)
T ss_dssp EEEEECHHHHHTCT
T ss_pred EEEecCHHHHHhCC
Confidence 99999999997554
No 54
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=8.1e-35 Score=312.34 Aligned_cols=195 Identities=17% Similarity=0.209 Sum_probs=129.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHH---------------------HHHHcccCCCCCCCc-------ccEEEECce
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLV---------------------NRISKVFENDKFASE-------RAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl---------------------~~I~Gl~~~~~~~p~-------~G~I~i~G~ 144 (397)
|+||||+|++||+++|+||||||||||+ ++++|+.. |+ .|.|.++|.
T Consensus 34 L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~-----~~~~~i~~~~~~i~~~~~ 108 (670)
T 3ux8_A 34 LKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK-----PDVDAIEGLSPAISIDQK 108 (670)
T ss_dssp CCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-------------------CCCSEEESCCCEEEESSC
T ss_pred eeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc-----CCccceeccccceEecCc
Confidence 9999999999999999999999999998 89999998 87 556666665
Q ss_pred ------eCcEEEEecCCCCCCC----------------CCCccHHHHHhcCCC---Ch---hhHH------HHHHHHHHH
Q 015952 145 ------VGDGTYFLQEYTIPRG----------------SNSFSLYDTRSLSDD---AS---DNIN------MIKLWIMEG 190 (397)
Q Consensus 145 ------~~~ig~v~Q~~~l~~~----------------~~~ltv~eni~~~~~---~~---~~~~------~~~~~ll~~ 190 (397)
+..+|+++|.+.++.. ...+||.||+.+... .. .... .....+++.
T Consensus 109 ~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 188 (670)
T 3ux8_A 109 TTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN 188 (670)
T ss_dssp C-----CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred hhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence 3457777776554210 125689999887422 00 0000 011235889
Q ss_pred CCCcc--cccCCCCCChHHHHHHHHHHHHcCCCC--eEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcc
Q 015952 191 VRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEPS--VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYL 266 (397)
Q Consensus 191 vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P~--iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~ 266 (397)
+|+.+ ..+++.+|||||||||+|||||+.+|+ +| +||||| ++||+.... ...+.+.++
T Consensus 189 ~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lL--------lLDEPt--sgLD~~~~~--~l~~~l~~l------ 250 (670)
T 3ux8_A 189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY--------VLDEPS--IGLHQRDND--RLIATLKSM------ 250 (670)
T ss_dssp TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEE--------EEECTT--TTCCGGGHH--HHHHHHHHH------
T ss_pred cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEE--------EEECCc--cCCCHHHHH--HHHHHHHHH------
Confidence 99954 367789999999999999999999998 99 666666 788866544 344555443
Q ss_pred cccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCcccccCCCC
Q 015952 267 SFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 267 ~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~~el~~~~~ 312 (397)
.++|+|||+|||| .....|||| ++| ++|++++.|++++++..+.
T Consensus 251 -~~~g~tvi~vtHd~~~~~~~d~i-i~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 251 -RDLGNTLIVVEHDEDTMLAADYL-IDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp -HHTTCEEEEECCCHHHHHHCSEE-EEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred -HHcCCEEEEEeCCHHHHhhCCEE-EEecccccccCCEEEEecCHHHHhcCch
Confidence 2468999999996 455679999 568 8999999999999887653
No 55
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=9.6e-35 Score=308.63 Aligned_cols=191 Identities=13% Similarity=0.070 Sum_probs=145.2
Q ss_pred CeEEE--------EeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEE--
Q 015952 70 SLTDA--------KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-- 139 (397)
Q Consensus 70 ~~lel--------~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I-- 139 (397)
.+|++ +||+++|+....+ |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++
T Consensus 82 ~~i~i~~l~~~~~~~ls~~yg~~~~~-----l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~-----p~~G~~~~ 150 (607)
T 3bk7_A 82 NAISIVNLPEQLDEDCVHRYGVNAFV-----LYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI-----PNLCEDND 150 (607)
T ss_dssp CCCEEEEECTTGGGSEEEECSTTCCE-----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC-----CCTTTTCC
T ss_pred ceEEEecCCccccCCeEEEECCCCee-----eCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC-----CCCCcccc
Confidence 35888 8999999643224 99999 999999999999999999999999999999 999996
Q ss_pred -------EECce------------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccC
Q 015952 140 -------TYNSS------------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIR 199 (397)
Q Consensus 140 -------~i~G~------------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~ 199 (397)
.++|. +..+++++|...........|+.||+..... .+++.++++.+|+.+ ..++
T Consensus 151 ~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~-----~~~~~~~L~~lgL~~~~~~~ 225 (607)
T 3bk7_A 151 SWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE-----VGKFEEVVKELELENVLDRE 225 (607)
T ss_dssp CHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC-----SSCHHHHHHHTTCTTGGGSB
T ss_pred ccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHH-----HHHHHHHHHHcCCCchhCCC
Confidence 34553 1357899987543221112389998864211 234678999999944 5677
Q ss_pred CCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec
Q 015952 200 RSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 200 ~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH 279 (397)
+.+|||||||||+|||||+.+|++| +||||| ++||+.... ...+.+.++. ++|+|||+|||
T Consensus 226 ~~~LSGGekQRvaIAraL~~~P~lL--------lLDEPT--s~LD~~~~~--~l~~~L~~l~-------~~g~tvIivsH 286 (607)
T 3bk7_A 226 LHQLSGGELQRVAIAAALLRKAHFY--------FFDEPS--SYLDIRQRL--KVARVIRRLA-------NEGKAVLVVEH 286 (607)
T ss_dssp GGGCCHHHHHHHHHHHHHHSCCSEE--------EEECTT--TTCCHHHHH--HHHHHHHHHH-------HTTCEEEEECS
T ss_pred hhhCCHHHHHHHHHHHHHhcCCCEE--------EEECCc--ccCCHHHHH--HHHHHHHHHH-------hcCCEEEEEec
Confidence 8899999999999999999999999 555556 777754433 3445554441 35899999999
Q ss_pred h--hHHccccEEEEEeeCC
Q 015952 280 G--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 280 ~--~~~~~aDrI~v~l~~G 296 (397)
| .+..+|||| ++|+++
T Consensus 287 dl~~~~~~adri-~vl~~~ 304 (607)
T 3bk7_A 287 DLAVLDYLSDVI-HVVYGE 304 (607)
T ss_dssp CHHHHHHHCSEE-EEEESC
T ss_pred ChHHHHhhCCEE-EEECCC
Confidence 5 778899999 568754
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=1e-34 Score=304.67 Aligned_cols=189 Identities=13% Similarity=0.068 Sum_probs=141.1
Q ss_pred EEE-EeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEE---------EE
Q 015952 72 TDA-KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV---------TY 141 (397)
Q Consensus 72 lel-~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I---------~i 141 (397)
.++ +||+|+|++...+ |+++| +|++||+++|+||||||||||+|+|+|+++ |++|++ .+
T Consensus 21 ~~~~~~ls~~yg~~~~~-----l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~-----p~~G~~~~~~~~~~~~~ 89 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFV-----LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI-----PNLCGDNDSWDGVIRAF 89 (538)
T ss_dssp ---CCCEEEECSTTCCE-----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSHHHHHHHT
T ss_pred hhHhcCcEEEECCcccc-----ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC-----CCCCccCcchhhhHHhh
Confidence 456 6999999643224 99999 999999999999999999999999999999 999995 34
Q ss_pred Cce------------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHH
Q 015952 142 NSS------------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRN 208 (397)
Q Consensus 142 ~G~------------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqk 208 (397)
+|. +..+++++|.....+.....++.+++.... ..+++.++++.+|+.. ..+++.+||||||
T Consensus 90 ~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGek 164 (538)
T 1yqt_A 90 RGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKAD-----ETGKLEEVVKALELENVLEREIQHLSGGEL 164 (538)
T ss_dssp TTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHHH
T ss_pred CCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhh-----HHHHHHHHHHHcCCChhhhCChhhCCHHHH
Confidence 553 135789999754432111137888875321 1235678999999944 5667889999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
|||+|||||+.+|++| +||||| ++||+.... ...+.+.++. +.|+|||+|||| ++..+|
T Consensus 165 QRv~iAraL~~~P~lL--------lLDEPT--s~LD~~~~~--~l~~~L~~l~-------~~g~tvi~vsHd~~~~~~~~ 225 (538)
T 1yqt_A 165 QRVAIAAALLRNATFY--------FFDEPS--SYLDIRQRL--NAARAIRRLS-------EEGKSVLVVEHDLAVLDYLS 225 (538)
T ss_dssp HHHHHHHHHHSCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHHH-------HTTCEEEEECSCHHHHHHHC
T ss_pred HHHHHHHHHhcCCCEE--------EEECCc--ccCCHHHHH--HHHHHHHHHH-------hcCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999 556666 777754433 3445554441 358999999995 888999
Q ss_pred cEEEEEeeCC
Q 015952 287 DRARIRTYLG 296 (397)
Q Consensus 287 DrI~v~l~~G 296 (397)
||| ++|++|
T Consensus 226 dri-~vl~~~ 234 (538)
T 1yqt_A 226 DII-HVVYGE 234 (538)
T ss_dssp SEE-EEEEEE
T ss_pred CEE-EEEcCc
Confidence 999 568754
No 57
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=99.98 E-value=7.2e-32 Score=297.60 Aligned_cols=194 Identities=12% Similarity=0.052 Sum_probs=146.8
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHc-ccCCCCCCCcccEEEECceeCcE
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~G-l~~~~~~~p~~G~I~i~G~~~~i 148 (397)
..+...|++++|+ +..+ |+|+||+|++|++++|+||||||||||+|+|+| ... +. +.. + ..++
T Consensus 434 ~~L~~~~ls~~yg-~~~i-----L~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~-g~--~~~------~-~~~~ 497 (986)
T 2iw3_A 434 EDLCNCEFSLAYG-AKIL-----LNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVD-GF--PTQ------E-ECRT 497 (986)
T ss_dssp CEEEEEEEEEEET-TEEE-----EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTCST-TC--CCT------T-TSCE
T ss_pred ceeEEeeEEEEEC-CEEe-----EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcC-CC--ccc------c-ceeE
Confidence 3567779999995 3334 999999999999999999999999999999985 221 00 111 1 1247
Q ss_pred EEEecCC-CCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-c-cccCCCCCChHHHHHHHHHHHHcCCCCeEe
Q 015952 149 TYFLQEY-TIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-E-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIR 225 (397)
Q Consensus 149 g~v~Q~~-~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLl 225 (397)
+|++|++ .++. .+|+.+|+.+.... . ++++.++++.+|+. . ..+++.+||||||||++|||||+.+|++|
T Consensus 498 ~~v~q~~~~~~~---~ltv~e~l~~~~~~--~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lL- 570 (986)
T 2iw3_A 498 VYVEHDIDGTHS---DTSVLDFVFESGVG--T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADIL- 570 (986)
T ss_dssp EETTCCCCCCCT---TSBHHHHHHTTCSS--C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEE-
T ss_pred EEEccccccccc---CCcHHHHHHHhhcC--H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEE-
Confidence 8899875 4444 68999999762111 1 56788899999993 3 46678899999999999999999999999
Q ss_pred eccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEe-eeC
Q 015952 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELL-GIP 302 (397)
Q Consensus 226 lDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv-~~g 302 (397)
+||||| ++||.... +.+.+++ .. .|+|||+|||+ ++..+|||| ++|++|+++ ..|
T Consensus 571 -------LLDEPT--s~LD~~~~------~~l~~~L----~~--~g~tvIivSHdl~~l~~~adri-i~L~~G~iv~~~G 628 (986)
T 2iw3_A 571 -------LLDEPT--NHLDTVNV------AWLVNYL----NT--CGITSITISHDSVFLDNVCEYI-INYEGLKLRKYKG 628 (986)
T ss_dssp -------EEESTT--TTCCHHHH------HHHHHHH----HH--SCSEEEEECSCHHHHHHHCSEE-EEEETTEEEEEES
T ss_pred -------EEECCc--cCCCHHHH------HHHHHHH----Hh--CCCEEEEEECCHHHHHHhCCEE-EEEECCeeecCCC
Confidence 556666 77774433 3444443 22 58999999995 888999999 579999997 578
Q ss_pred Cccccc
Q 015952 303 PAKQIF 308 (397)
Q Consensus 303 ~~~el~ 308 (397)
++++++
T Consensus 629 ~~~e~~ 634 (986)
T 2iw3_A 629 NFTEFV 634 (986)
T ss_dssp CHHHHH
T ss_pred CHHHHH
Confidence 877654
No 58
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.97 E-value=1e-31 Score=295.53 Aligned_cols=198 Identities=17% Similarity=0.188 Sum_probs=137.4
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHH---------HHHHcccCCC-CCCCcccE------EEECce------------
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLV---------NRISKVFEND-KFASERAQ------VTYNSS------------ 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl---------~~I~Gl~~~~-~~~p~~G~------I~i~G~------------ 144 (397)
|+||||+|++|++++|+||||||||||+ +++.+..... .+.+.+|. +.++..
T Consensus 600 Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~at 679 (916)
T 3pih_A 600 LKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPAT 679 (916)
T ss_dssp CCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHHH
T ss_pred ccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccccc
Confidence 9999999999999999999999999997 4444433200 00122332 222221
Q ss_pred ---------------------------------------eCcEEEEecCCCCCCC-------------------------
Q 015952 145 ---------------------------------------VGDGTYFLQEYTIPRG------------------------- 160 (397)
Q Consensus 145 ---------------------------------------~~~ig~v~Q~~~l~~~------------------------- 160 (397)
....|+++|+..+++.
T Consensus 680 ~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g~ 759 (916)
T 3pih_A 680 YTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKGK 759 (916)
T ss_dssp HSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTTB
T ss_pred hhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhccC
Confidence 0124667666544321
Q ss_pred ----CCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcCCC---CeEeeccccc
Q 015952 161 ----SNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEP---SVIRKVNFVI 231 (397)
Q Consensus 161 ----~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P---~iLllDEP~~ 231 (397)
...+|+.+++.|..... ...++.++|+.+||++ ...++.+|||||||||+|||||+.+| ++|
T Consensus 760 ~i~~vl~~tv~eal~f~~~~~--~~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LL------- 830 (916)
T 3pih_A 760 NISDILDMTVDEALEFFKNIP--SIKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLY------- 830 (916)
T ss_dssp CHHHHHSSBHHHHHHHTTTCH--HHHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEE-------
T ss_pred CHHHHhhCCHHHHHHHHhcch--hHHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEE-------
Confidence 01356777776654321 2345678999999964 35678899999999999999999876 799
Q ss_pred cccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCc
Q 015952 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPA 304 (397)
Q Consensus 232 siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~ 304 (397)
+||||| ++||..... ..++.+.++ .++|.|||+|||+ ++...|||| ++| ++|+|++.|++
T Consensus 831 -ILDEPT--sGLD~~~~~--~L~~lL~~L-------~~~G~TVIvI~HdL~~i~~ADrI-ivLgp~gg~~~G~Iv~~Gtp 897 (916)
T 3pih_A 831 -ILDEPT--VGLHFEDVR--KLVEVLHRL-------VDRGNTVIVIEHNLDVIKNADHI-IDLGPEGGKEGGYIVATGTP 897 (916)
T ss_dssp -EEESTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEECCCHHHHTTCSEE-EEEESSSGGGCCEEEEEESH
T ss_pred -EEECCC--CCCCHHHHH--HHHHHHHHH-------HhcCCEEEEEeCCHHHHHhCCEE-EEecCCCCCCCCEEEEEcCH
Confidence 666667 788855433 344444443 2469999999996 566779999 569 89999999999
Q ss_pred ccccCCCC
Q 015952 305 KQIFDIPE 312 (397)
Q Consensus 305 ~el~~~~~ 312 (397)
++++..+.
T Consensus 898 eel~~~~~ 905 (916)
T 3pih_A 898 EEIAKNPH 905 (916)
T ss_dssp HHHHSCTT
T ss_pred HHHHhCCc
Confidence 99998764
No 59
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.97 E-value=3.1e-31 Score=289.64 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=86.9
Q ss_pred HHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcCC---CCeEeeccccccccchhhhhccccccchhhhHHHHH
Q 015952 182 MIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCE---PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 256 (397)
Q Consensus 182 ~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~---P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~ 256 (397)
+++.++++.++|.. ...++.+|||||||||+|||+|+.+ |++| +||||| ++||..... ...+.
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lL--------ILDEPT--sGLD~~~~~--~l~~l 775 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVY--------VLDEPT--TGLHPADVE--RLQRQ 775 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEE--------EEECTT--TTCCHHHHH--HHHHH
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEE--------EEECCC--CCCCHHHHH--HHHHH
Confidence 46788999999965 3667889999999999999999997 6999 666667 777754333 33444
Q ss_pred HHHhcCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCcccccCCCC
Q 015952 257 VATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 257 i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~~el~~~~~ 312 (397)
+.++ .+.|.|||+|||| +....|||| ++| ++|+|++.|++++++..+.
T Consensus 776 L~~L-------~~~G~tVIvisHdl~~i~~aDri-i~L~p~~g~~~G~Iv~~g~~~el~~~~~ 830 (842)
T 2vf7_A 776 LVKL-------VDAGNTVIAVEHKMQVVAASDWV-LDIGPGAGEDGGRLVAQGTPAEVAQAAG 830 (842)
T ss_dssp HHHH-------HHTTCEEEEECCCHHHHTTCSEE-EEECSSSGGGCCSEEEEECHHHHTTCTT
T ss_pred HHHH-------HhCCCEEEEEcCCHHHHHhCCEE-EEECCCCCCCCCEEEEEcCHHHHHhCch
Confidence 4433 2469999999996 444889999 569 7999999999999987654
No 60
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=3.9e-31 Score=290.24 Aligned_cols=254 Identities=15% Similarity=0.163 Sum_probs=169.9
Q ss_pred CCCCcCCCCCCcchhhhhHHHHHHHHHH----------HHHHHHHhcccccc----------------------------
Q 015952 23 DDFDIPLLSGDDEGSRDSWDSLVDQRRR----------DAVFREVLQSYDQL---------------------------- 64 (397)
Q Consensus 23 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---------------------------- 64 (397)
==|||||++||+.....+++.+.+++.. .+.+. ..+....+
T Consensus 528 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~~~slt 606 (972)
T 2r6f_A 528 YVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLT 606 (972)
T ss_dssp EEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEECTTTTTTCTTCTT
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecCHHHHHhhhHHHH
Confidence 3499999999999999999999888642 11111 11111111
Q ss_pred ------------cc----CCCCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHH-ccc
Q 015952 65 ------------RT----RIGSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVF 127 (397)
Q Consensus 65 ------------~~----~~~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~-Gl~ 127 (397)
+. ...+.|+++|++. . . |+||||+|++|++++|+|+||||||||+++|. |.+
T Consensus 607 ~~~l~g~~~~~~~~~~~~~~~~~L~v~~l~~-----~-~-----Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l 675 (972)
T 2r6f_A 607 GQYLSGKKFIPIPAERRRPDGRWLEVVGARE-----H-N-----LKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKAL 675 (972)
T ss_dssp HHHHHTSSCCCCCSSCCCCCSCEEEEEEECS-----S-S-----CCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHH
T ss_pred HHHhcCCccccCccccccccceEEEEecCcc-----c-c-----cccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 00 0124577777641 1 2 99999999999999999999999999999864 322
Q ss_pred ----CCCCCCCccc-------------EEEECcee-----------------------------CcEEEEecCCCCCCC-
Q 015952 128 ----ENDKFASERA-------------QVTYNSSV-----------------------------GDGTYFLQEYTIPRG- 160 (397)
Q Consensus 128 ----~~~~~~p~~G-------------~I~i~G~~-----------------------------~~ig~v~Q~~~l~~~- 160 (397)
.+.. +..| .|.+++.. +.+||++|.+.+...
T Consensus 676 ~~~l~~~~--~~~G~~~~i~G~~~~~~~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~g 753 (972)
T 2r6f_A 676 AQKLHRAK--AKPGEHRDIRGLEHLDKVIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKG 753 (972)
T ss_dssp HHHHHCCC--CCCCSCSEEECGGGCSEEEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTT
T ss_pred HHhhcCCC--CCCCceeeeccccccceEEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhccccccccccccc
Confidence 1000 1223 35666531 224677765432100
Q ss_pred ----------------------------------------------C----CCccHHHHHhcCCCChhhHHHHHHHHHHH
Q 015952 161 ----------------------------------------------S----NSFSLYDTRSLSDDASDNINMIKLWIMEG 190 (397)
Q Consensus 161 ----------------------------------------------~----~~ltv~eni~~~~~~~~~~~~~~~~ll~~ 190 (397)
+ ..+|+.+++.+..... . ..++.++++.
T Consensus 754 grC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~-~-~~~~~~~L~~ 831 (972)
T 2r6f_A 754 GRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIP-K-IKRKLETLYD 831 (972)
T ss_dssp TBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCH-H-HHHHHHHHHH
T ss_pred ccccccccccceeeehhccccccccccccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcch-h-HHHHHHHHHH
Confidence 0 0346667766543321 1 2345678999
Q ss_pred CCCcc--cccCCCCCChHHHHHHHHHHHHcCCC---CeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCc
Q 015952 191 VRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEP---SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPY 265 (397)
Q Consensus 191 vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P---~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~ 265 (397)
++|.. ...++.+|||||||||+|||||+.+| ++| +||||| ++||..... ...+.+.++
T Consensus 832 ~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lL--------ILDEPT--sGLD~~~~~--~l~~lL~~L----- 894 (972)
T 2r6f_A 832 VGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLY--------ILDEPT--TGLHVDDIA--RLLDVLHRL----- 894 (972)
T ss_dssp TTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEE--------EEECTT--TTCCHHHHH--HHHHHHHHH-----
T ss_pred cCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEE--------EEECCC--CCCCHHHHH--HHHHHHHHH-----
Confidence 99954 46678899999999999999999875 999 666666 777754333 334444443
Q ss_pred ccccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCcccccCCCC
Q 015952 266 LSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 266 ~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~~el~~~~~ 312 (397)
.+.|.|||+|||+ +....|||| ++| ++|++++.|++++++..+.
T Consensus 895 --~~~G~TVIvisHdl~~i~~aDrI-ivL~p~gG~~~G~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 895 --VDNGDTVLVIEHNLDVIKTADYI-IDLGPEGGDRGGQIVAVGTPEEVAEVKE 945 (972)
T ss_dssp --HHTTCEEEEECCCHHHHTTCSEE-EEECSSSTTSCCSEEEEESHHHHHTCTT
T ss_pred --HhCCCEEEEEcCCHHHHHhCCEE-EEEcCCCCCCCCEEEEecCHHHHHhCch
Confidence 2469999999996 455789999 569 7999999999999987653
No 61
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=99.97 E-value=1.7e-31 Score=283.63 Aligned_cols=188 Identities=14% Similarity=0.039 Sum_probs=130.9
Q ss_pred eEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEE-----------ECce
Q 015952 76 NKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT-----------YNSS 144 (397)
Q Consensus 76 nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~-----------i~G~ 144 (397)
|++++|+.+... |++++ .+++||+++|+||||||||||+|+|+|+++ |++|+|. +.|.
T Consensus 82 ~~~~~Y~~~~~~-----l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~-----P~~G~i~~~~~~~~~~~~~~g~ 150 (608)
T 3j16_B 82 HVTHRYSANSFK-----LHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK-----PNLGRFDDPPEWQEIIKYFRGS 150 (608)
T ss_dssp TEEEECSTTSCE-----EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC-----CCTTTTCCSSCHHHHHHHTTTS
T ss_pred CeEEEECCCcee-----ecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC-----CCCceEecccchhhhhheecCh
Confidence 568889655433 66676 589999999999999999999999999999 9999983 3332
Q ss_pred e----------CcE--EEEecCCCCCC---CCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHH
Q 015952 145 V----------GDG--TYFLQEYTIPR---GSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRN 208 (397)
Q Consensus 145 ~----------~~i--g~v~Q~~~l~~---~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqk 208 (397)
. ..+ .+.+|...... .....++.+++..... ...+++.++++.+++. ...+++.+||||||
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~ 227 (608)
T 3j16_B 151 ELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME---KSPEDVKRYIKILQLENVLKRDIEKLSGGEL 227 (608)
T ss_dssp THHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCC---SCHHHHHHHHHHHTCTGGGGSCTTTCCHHHH
T ss_pred hhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhh---hHHHHHHHHHHHcCCcchhCCChHHCCHHHH
Confidence 0 111 22233211100 0011245554433211 1235678899999994 45677899999999
Q ss_pred HHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccc
Q 015952 209 RMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLT 286 (397)
Q Consensus 209 QRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~a 286 (397)
|||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .++|+|||+|||+ ++..+|
T Consensus 228 Qrv~iAraL~~~p~ll--------llDEPt--s~LD~~~~~--~l~~~l~~l-------~~~g~tvi~vtHdl~~~~~~~ 288 (608)
T 3j16_B 228 QRFAIGMSCVQEADVY--------MFDEPS--SYLDVKQRL--NAAQIIRSL-------LAPTKYVICVEHDLSVLDYLS 288 (608)
T ss_dssp HHHHHHHHHHSCCSEE--------EEECTT--TTCCHHHHH--HHHHHHHGG-------GTTTCEEEEECSCHHHHHHHC
T ss_pred HHHHHHHHHHhCCCEE--------EEECcc--cCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEeCCHHHHHHhC
Confidence 9999999999999999 555556 777754333 334444443 2468999999995 888999
Q ss_pred cEEEEEeeCCE
Q 015952 287 DRARIRTYLGE 297 (397)
Q Consensus 287 DrI~v~l~~G~ 297 (397)
||| ++|++|.
T Consensus 289 drv-~vl~~~~ 298 (608)
T 3j16_B 289 DFV-CIIYGVP 298 (608)
T ss_dssp SEE-EEEESCT
T ss_pred CEE-EEEeCCc
Confidence 999 4687754
No 62
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=1.1e-30 Score=287.41 Aligned_cols=255 Identities=16% Similarity=0.155 Sum_probs=166.9
Q ss_pred CCCCcCCCCCCcchhhhhHHHHHHHHHH----------HHHH--------------------------HHHhcccc----
Q 015952 23 DDFDIPLLSGDDEGSRDSWDSLVDQRRR----------DAVF--------------------------REVLQSYD---- 62 (397)
Q Consensus 23 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~--------------------------~~~~~~~~---- 62 (397)
==|||||++||+.....+++.+.+++.. .+.+ .+++..+.
T Consensus 545 lILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~~~~lt~ 624 (993)
T 2ygr_A 545 YVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRNKDSITG 624 (993)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHCTTCHHH
T ss_pred EEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhhhHHHHH
Confidence 3499999999999999999999888642 1111 11111000
Q ss_pred ---------cccc----CC-CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHH-cc-
Q 015952 63 ---------QLRT----RI-GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KV- 126 (397)
Q Consensus 63 ---------~~~~----~~-~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~-Gl- 126 (397)
..+. .. .+.|+++|++. . . |+||||+|++|++++|+|+||||||||+++|. |.
T Consensus 625 ~~l~g~~~~~~~~~~~~~~~~~~L~v~~l~~----~--~-----Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l 693 (993)
T 2ygr_A 625 AYLSGRESIEIPAIRRSVDPRRQLTVVGARE----H--N-----LRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVL 693 (993)
T ss_dssp HHHHTSSCCCCCSSCCCCCSSSEEEEEEECS----T--T-----CCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHH
T ss_pred HHhccCccccCccccccCCCCceEEEecCcc----c--c-----ccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 0000 01 24688888741 1 2 99999999999999999999999999999853 32
Q ss_pred ---cCCCCCCCcccEE-EECc------------ee-----------------------------CcEEEEecCCCCCCC-
Q 015952 127 ---FENDKFASERAQV-TYNS------------SV-----------------------------GDGTYFLQEYTIPRG- 160 (397)
Q Consensus 127 ---~~~~~~~p~~G~I-~i~G------------~~-----------------------------~~ig~v~Q~~~l~~~- 160 (397)
+.+.. +..|.+ .+.| .. +.+||++|.+.+...
T Consensus 694 ~~~l~~~~--~~~G~~~~i~G~~~~~~~i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~ 771 (993)
T 2ygr_A 694 ANRLNGAR--QVPGRHTRVTGLDYLDKLVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKG 771 (993)
T ss_dssp HHHTTCCC--CCCCSEEEECCCTTCSEEECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTT
T ss_pred HhhhcCCc--CCCCceeeecCccccceEEEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhccccccccccccc
Confidence 22100 234443 3333 10 123555554322100
Q ss_pred ----------------------------------------------C----CCccHHHHHhcCCCChhhHHHHHHHHHHH
Q 015952 161 ----------------------------------------------S----NSFSLYDTRSLSDDASDNINMIKLWIMEG 190 (397)
Q Consensus 161 ----------------------------------------------~----~~ltv~eni~~~~~~~~~~~~~~~~ll~~ 190 (397)
+ ..+|+.+++.+..... . ..++.++++.
T Consensus 772 grC~~C~g~G~~~~e~~fl~~v~~~ce~c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~~~-~-~~~~~~~L~~ 849 (993)
T 2ygr_A 772 GRCEACTGDGTIKIEMNFLPDVYVPCEVCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPIA-G-VHRYLRTLVD 849 (993)
T ss_dssp TBCTTTTSSSEEEECCTTSCCEEEECTTTTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTTCH-H-HHHHHHHHHH
T ss_pred ccccccccccceeehhhccccceeeehhccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhcch-H-HHHHHHHHHH
Confidence 0 0245566665543221 1 2335678999
Q ss_pred CCCcc--cccCCCCCChHHHHHHHHHHHHcCCC---CeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCc
Q 015952 191 VRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEP---SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPY 265 (397)
Q Consensus 191 vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P---~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~ 265 (397)
++|.. ....+.+|||||||||+|||||+.+| ++| +||||| ++||..... ...+.+.++
T Consensus 850 lgL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lL--------ILDEPT--sGLD~~~~~--~l~~lL~~L----- 912 (993)
T 2ygr_A 850 VGLGYVRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVY--------ILDEPT--TGLHFDDIR--KLLNVINGL----- 912 (993)
T ss_dssp TTGGGSBTTCCGGGSCHHHHHHHHHHHHHSSCCCSSEEE--------EEESTT--TTCCHHHHH--HHHHHHHHH-----
T ss_pred cCCCcccccCccccCCHHHHHHHHHHHHHHhCCCCCCEE--------EEECCC--CCCCHHHHH--HHHHHHHHH-----
Confidence 99954 45678899999999999999999875 999 666666 777754333 334444433
Q ss_pred ccccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCcccccCCCC
Q 015952 266 LSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 266 ~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~~el~~~~~ 312 (397)
.+.|.|||+|||+ +....|||| ++| ++|++++.|++++++..+.
T Consensus 913 --~~~G~TVIvisHdl~~i~~aDrI-ivL~p~gg~~~G~Iv~~G~~~el~~~~~ 963 (993)
T 2ygr_A 913 --VDKGNTVIVIEHNLDVIKTSDWI-IDLGPEGGAGGGTVVAQGTPEDVAAVPA 963 (993)
T ss_dssp --HHTTCEEEEECCCHHHHTTCSEE-EEEESSSTTSCSEEEEEECHHHHHHCTT
T ss_pred --HhCCCEEEEEcCCHHHHHhCCEE-EEECCCcCCCCCEEEEecCHHHHHhCCH
Confidence 2469999999996 455789999 569 7999999999999886653
No 63
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=99.97 E-value=2.5e-31 Score=278.85 Aligned_cols=185 Identities=15% Similarity=0.050 Sum_probs=131.9
Q ss_pred EeEEEEECCCceEeeccCceeeeEEE-cCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEE-----------EEC
Q 015952 75 KNKILSYTPGAWIENVGGMTLSDYDV-PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV-----------TYN 142 (397)
Q Consensus 75 ~nvs~~Y~~~~~v~~~~~L~~isl~I-~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I-----------~i~ 142 (397)
++++.+|+.+. ++...|.+ ++||++||+||||||||||+|+|+|+++ |++|+| .++
T Consensus 3 ~~~~~~~~~~~-------f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~-----p~~G~i~~~~~~~~~~~~~~ 70 (538)
T 3ozx_A 3 GEVIHRYKVNG-------FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII-----PNFGDPNSKVGKDEVLKRFR 70 (538)
T ss_dssp CCEEEESSTTS-------CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC-----CCTTCTTSCCCHHHHHHHHT
T ss_pred CCCceecCCCc-------eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC-----CCCCccccccchhhHHhhcC
Confidence 35788997655 45455644 4899999999999999999999999999 999998 566
Q ss_pred cee------------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHH
Q 015952 143 SSV------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNR 209 (397)
Q Consensus 143 G~~------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQ 209 (397)
|.. ..+...+|...........++.+++.... .++++.++++.+++.. ..+++.+|||||||
T Consensus 71 g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Q 145 (538)
T 3ozx_A 71 GKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID-----ERGKKDEVKELLNMTNLWNKDANILSGGGLQ 145 (538)
T ss_dssp TSTTHHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC-----CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHH
T ss_pred CeeHHHHHHHHhhcccchhhccchhhhhhhhccCcHHHHhhcch-----hHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence 641 23444444432221111236776653211 1234678899999944 46678899999999
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHcccc
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTD 287 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aD 287 (397)
||+|||||+.+|++| +||||| ++||+.... ...+.+.++ .+|+|||+|||+ ++..+||
T Consensus 146 rv~iA~aL~~~p~il--------llDEPt--s~LD~~~~~--~l~~~l~~l--------~~g~tii~vsHdl~~~~~~~d 205 (538)
T 3ozx_A 146 RLLVAASLLREADVY--------IFDQPS--SYLDVRERM--NMAKAIREL--------LKNKYVIVVDHDLIVLDYLTD 205 (538)
T ss_dssp HHHHHHHHHSCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH--------CTTSEEEEECSCHHHHHHHCS
T ss_pred HHHHHHHHHcCCCEE--------EEECCc--ccCCHHHHH--HHHHHHHHH--------hCCCEEEEEEeChHHHHhhCC
Confidence 999999999999999 555556 777754333 344445443 238999999995 8889999
Q ss_pred EEEEEeeCCE
Q 015952 288 RARIRTYLGE 297 (397)
Q Consensus 288 rI~v~l~~G~ 297 (397)
||+ +|++|.
T Consensus 206 ~i~-vl~~~~ 214 (538)
T 3ozx_A 206 LIH-IIYGES 214 (538)
T ss_dssp EEE-EEEEET
T ss_pred EEE-EecCCc
Confidence 994 587643
No 64
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.3e-32 Score=281.66 Aligned_cols=195 Identities=9% Similarity=-0.040 Sum_probs=149.1
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc-E-EEECce-e
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-Q-VTYNSS-V 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G-~-I~i~G~-~ 145 (397)
.+|++++||+++|+ ++||++++|++++|+||||||||||+|+|+|++. |++| + |.++|. +
T Consensus 116 ~~mi~~~nl~~~y~------------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~-----p~~G~~pI~vdg~~~ 178 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL-----KFNAYQPLYINLDPQ 178 (460)
T ss_dssp CTHHHHHHHHHHHH------------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH-----HHHCCCCEEEECCTT
T ss_pred cchhhhhhhhehhh------------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc-----ccCCceeEEEcCCcc
Confidence 45788888887772 3899999999999999999999999999999999 9999 9 999985 4
Q ss_pred CcEEEEecCCCCCCCCCCccHHHHHhcCCCC--hhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHH--HcCCC
Q 015952 146 GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK--IGCEP 221 (397)
Q Consensus 146 ~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArA--L~~~P 221 (397)
+.++|+||++.++.....+++.+|+ ++... .....+++.++++.+|+....+ +.+|||||||||+|||| |+.+|
T Consensus 179 ~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~~~~-~~~LSgGq~qrlalAra~rL~~~p 256 (460)
T 2npi_A 179 QPIFTVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLERINE-NKDLYLECISQLGQVVGQRLHLDP 256 (460)
T ss_dssp SCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSSGGG-CHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CCeeeeccchhhcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCcccc-hhhhhHHHHHHHHHHHHHHhccCc
Confidence 6799999998543222246899998 65431 1111233556788888855444 78899999999999999 99999
Q ss_pred Ce----Eeeccccccccch-hhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--h------hHHccccE
Q 015952 222 SV----IRKVNFVIFVVDG-LAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--G------DLLSLTDR 288 (397)
Q Consensus 222 ~i----LllDEP~~siLDE-pT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~------~~~~~aDr 288 (397)
++ | +||| || ++||.. . +.+.+++ .+.++|+|+||| + ++.++|||
T Consensus 257 ~i~~sGL--------lLDEpPt--s~LD~~-~------~~l~~l~------~~~~~tviiVth~~~~~l~~~~~~~~~dr 313 (460)
T 2npi_A 257 QVRRSGC--------IVDTPSI--SQLDEN-L------AELHHII------EKLNVNIMLVLCSETDPLWEKVKKTFGPE 313 (460)
T ss_dssp HHHHSCE--------EEECCCG--GGSCSS-C------HHHHHHH------HHTTCCEEEEECCSSCTHHHHHHHHHHHH
T ss_pred ccCcceE--------EEeCCcc--cccChh-H------HHHHHHH------HHhCCCEEEEEccCchhhhHHHHHHhccc
Confidence 99 9 5555 56 788866 1 2222221 123779999999 3 45589999
Q ss_pred -----EEEEee-CCEEeeeCCcccc
Q 015952 289 -----ARIRTY-LGELLGIPPAKQI 307 (397)
Q Consensus 289 -----I~v~l~-~G~iv~~g~~~el 307 (397)
| ++|+ +|+++ .|+++++
T Consensus 314 ~~~~~v-i~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 314 LGNNNI-FFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp HCGGGE-EEECCCTTCC-CCCHHHH
T ss_pred ccCCEE-EEEeCCCcEE-ECCHHHH
Confidence 9 5699 99999 8887655
No 65
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.95 E-value=2.1e-27 Score=239.43 Aligned_cols=187 Identities=16% Similarity=0.186 Sum_probs=124.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCC-----------------C----------------CCcccEE
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDK-----------------F----------------ASERAQV 139 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~-----------------~----------------~p~~G~I 139 (397)
++++||+|.+| +++|+||||||||||+++|.++..... + .+.+|++
T Consensus 51 l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~i 129 (415)
T 4aby_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAA 129 (415)
T ss_dssp EEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEEE
T ss_pred eeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceEE
Confidence 99999999999 999999999999999999988875210 0 1457899
Q ss_pred EECcee-----------CcEEEEecCCCCCCCCC--CccHHHHHhcCCC-------------------------------
Q 015952 140 TYNSSV-----------GDGTYFLQEYTIPRGSN--SFSLYDTRSLSDD------------------------------- 175 (397)
Q Consensus 140 ~i~G~~-----------~~ig~v~Q~~~l~~~~~--~ltv~eni~~~~~------------------------------- 175 (397)
.+||+. ..+++++|+..++...+ ...+.|++.....
T Consensus 130 ~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~ 209 (415)
T 4aby_A 130 RLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPTS 209 (415)
T ss_dssp EETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC-----------
T ss_pred EECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcc
Confidence 999983 23899999987754110 0122222211000
Q ss_pred ---------------------------ChhhHHHHHHHHHHHCCCcc------------------------cccCCC---
Q 015952 176 ---------------------------ASDNINMIKLWIMEGVRHGE------------------------LVIRRS--- 201 (397)
Q Consensus 176 ---------------------------~~~~~~~~~~~ll~~vgl~~------------------------~~~~~~--- 201 (397)
........+.+.++.+++.. ....+.
T Consensus 210 i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 289 (415)
T 4aby_A 210 LVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEEL 289 (415)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCCC
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCcc
Confidence 00001123344555555421 001111
Q ss_pred ----C-CChHHHHHHHHHHHHcCCC--CeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceE
Q 015952 202 ----D-SSSLRNRMRCKAHKIGCEP--SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPV 274 (397)
Q Consensus 202 ----~-lSGGqkQRvaIArAL~~~P--~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TV 274 (397)
. +|||||||++|||+|+.+| ++| +||||| ++||..... ...+.+.++ .+|.||
T Consensus 290 ~~~~~~lSgGe~qrl~lA~~l~~~~~~~~L--------lLDEpt--~~LD~~~~~--~l~~~L~~l--------~~~~~v 349 (415)
T 4aby_A 290 GPLSDVASGGELSRVMLAVSTVLGADTPSV--------VFDEVD--AGIGGAAAI--AVAEQLSRL--------ADTRQV 349 (415)
T ss_dssp CBGGGCSCHHHHHHHHHHHHHHHCCSSSEE--------EESSTT--TTCCHHHHH--HHHHHHHHH--------TTTSEE
T ss_pred cchhhhcCHhHHHHHHHHHHHHhCCCCCEE--------EEECCC--CCCCHHHHH--HHHHHHHHH--------hCCCEE
Confidence 1 6999999999999999999 999 555556 677744333 233444333 358999
Q ss_pred EEEech-hHHccccEEEEEe----eCCEEeee
Q 015952 275 VVVTHG-DLLSLTDRARIRT----YLGELLGI 301 (397)
Q Consensus 275 IivTH~-~~~~~aDrI~v~l----~~G~iv~~ 301 (397)
|+|||+ .+...|||+ ++| ++|+++..
T Consensus 350 i~itH~~~~~~~~d~i-~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 350 LVVTHLAQIAARAHHH-YKVEKQVEDGRTVSH 380 (415)
T ss_dssp EEECSCHHHHTTCSEE-EEEEEEEETTEEEEE
T ss_pred EEEeCcHHHHhhcCeE-EEEEEeccCCceEEE
Confidence 999996 667889999 569 99998775
No 66
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=99.93 E-value=4.8e-30 Score=251.37 Aligned_cols=196 Identities=16% Similarity=0.101 Sum_probs=144.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhccccccccCC------CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEEC
Q 015952 37 SRDSWDSLVDQRRRDAVFREVLQSYDQLRTRI------GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIG 110 (397)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvG 110 (397)
....+..+++++.+..|+.++++.+++..... ..+|+++||+|+|+ ..+ |+++||+|++|++++|+|
T Consensus 61 ~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~i~~~~vs~~y~--~~v-----L~~vsl~i~~Ge~vaIvG 133 (305)
T 2v9p_A 61 CATMVRHYLRAETQALSMPAYIKARCKLATGEGSWKSILTFFNYQNIELITF--INA-----LKLWLKGIPKKNCLAFIG 133 (305)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSCCTHHHHHHHHHTTCCHHHH--HHH-----HHHHHHTCTTCSEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcccccCCeEEEEEEEEEcC--hhh-----hccceEEecCCCEEEEEC
Confidence 34456667777778889999988654432211 12589999999995 334 999999999999999999
Q ss_pred CCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHH-HHhcCCCChhhHHHHHHHHHH
Q 015952 111 PKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYD-TRSLSDDASDNINMIKLWIME 189 (397)
Q Consensus 111 pnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~e-ni~~~~~~~~~~~~~~~~ll~ 189 (397)
|||||||||+++|+|++ +|+| ++|++|++.++. .|+.+ |+.+...... .+.+.++
T Consensus 134 psGsGKSTLl~lL~gl~--------~G~I--------~~~v~q~~~lf~----~ti~~~ni~~~~~~~~----~~~~~i~ 189 (305)
T 2v9p_A 134 PPNTGKSMLCNSLIHFL--------GGSV--------LSFANHKSHFWL----ASLADTRAALVDDATH----ACWRYFD 189 (305)
T ss_dssp SSSSSHHHHHHHHHHHH--------TCEE--------ECGGGTTSGGGG----GGGTTCSCEEEEEECH----HHHHHHH
T ss_pred CCCCcHHHHHHHHhhhc--------CceE--------EEEecCcccccc----ccHHHHhhccCccccH----HHHHHHH
Confidence 99999999999999997 4888 356889988775 47887 8887532222 3344555
Q ss_pred HCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCccccc
Q 015952 190 GVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFR 269 (397)
Q Consensus 190 ~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~ 269 (397)
.+ +..... +..|||||||| ||||+.+|+|| + | ++||+..+... .
T Consensus 190 ~~-L~~gld-g~~LSgGqkQR---ARAll~~p~iL--------l----T--s~LD~~~~~~i--------------~--- 233 (305)
T 2v9p_A 190 TY-LRNALD-GYPVSIDRKHK---AAVQIKAPPLL--------V----T--SNIDVQAEDRY--------------L--- 233 (305)
T ss_dssp HT-TTGGGG-TCCEECCCSSC---CCCEECCCCEE--------E----E--ESSCSTTCGGG--------------G---
T ss_pred HH-hHccCC-ccCcCHHHHHH---HHHHhCCCCEE--------E----E--CCCCHHHHHHH--------------H---
Confidence 53 322111 77899999999 99999999999 5 5 88887665411 0
Q ss_pred CCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccc
Q 015952 270 DDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 270 ~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
.+||+ .+...|||| + |++|++++.|+++++
T Consensus 234 ------~ltH~~~~~~~aD~i-v-l~~G~iv~~g~~~el 264 (305)
T 2v9p_A 234 ------YLHSRVQTFRFEQPC-T-DESGEQPFNITDADW 264 (305)
T ss_dssp ------GGTTTEEEEECCCCC-C-CC---CCCCCCHHHH
T ss_pred ------HHhCCHHHHHhCCEE-E-EeCCEEEEeCCHHHH
Confidence 12886 667899999 6 999999999998876
No 67
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.91 E-value=1e-25 Score=201.73 Aligned_cols=165 Identities=15% Similarity=0.080 Sum_probs=93.7
Q ss_pred eeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCC
Q 015952 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 174 (397)
Q Consensus 95 ~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~ 174 (397)
||||+|++||+++|+||||||||||+|++.+-.. . +++. .-.|+++|++.-.. ..-++++++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~-----~------~~~d-~~~g~~~~~~~~~~--~~~~~~~~~---- 62 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE-----V------ISSD-FCRGLMSDDENDQT--VTGAAFDVL---- 62 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG-----E------EEHH-HHHHHHCSSTTCGG--GHHHHHHHH----
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe-----E------EccH-HHHHHhcCcccchh--hHHHHHHHH----
Confidence 5899999999999999999999999998654322 1 2211 12266777643211 001122221
Q ss_pred CChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccch-h-hhH
Q 015952 175 DASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSD-V-EKQ 252 (397)
Q Consensus 175 ~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~-~-~~~ 252 (397)
..... .....+...........|||||||++||||++.+|++|++||| ++.||..+. .-.+.... . ...
T Consensus 63 ------~~~~~-~~~~~g~~~~~~~~~~~s~g~~qrv~iAral~~~p~~lllDEP-t~~Ld~~~~-~R~~~~~~~~vi~~ 133 (171)
T 4gp7_A 63 ------HYIVS-KRLQLGKLTVVDATNVQESARKPLIEMAKDYHCFPVAVVFNLP-EKVCQERNK-NRTDRQVEEYVIRK 133 (171)
T ss_dssp ------HHHHH-HHHHTTCCEEEESCCCSHHHHHHHHHHHHHTTCEEEEEEECCC-HHHHHHHHH-TCSSCCCCHHHHHH
T ss_pred ------HHHHH-HHHhCCCeEEEECCCCCHHHHHHHHHHHHHcCCcEEEEEEeCC-HHHHHHHHh-cccCCCCCHHHHHH
Confidence 11222 2233455444445566799999999999999999999966666 444443321 00000000 0 011
Q ss_pred HHHHHHHhcCCCcccccCCceEEEEech-hHHccccEE
Q 015952 253 YNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRA 289 (397)
Q Consensus 253 ~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI 289 (397)
..+.+.+++.. + .++|+|+|++||+ +....++++
T Consensus 134 ~~~~l~~~l~~--l-~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 134 HTQQMKKSIKG--L-QREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHHHHHSTT--H-HHHTCSEEEEECSHHHHHHEEEE
T ss_pred HHHHhhhhhhh--H-HhcCCcEEEEeCCHHHhhhhhhc
Confidence 23444444311 1 2359999999996 333334443
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.90 E-value=9.8e-27 Score=216.02 Aligned_cols=148 Identities=14% Similarity=0.031 Sum_probs=89.9
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECc-------eeCcEEEEecCC--CCCCCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS-------SVGDGTYFLQEY--TIPRGSNS 163 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G-------~~~~ig~v~Q~~--~l~~~~~~ 163 (397)
|+++ ++|++++|+||||||||||+|+|+|+ + |++|+|.... .++.+||+||++ ++.. ..
T Consensus 16 l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~-----p~~G~I~~~~~~~~~~~~~~~ig~v~q~~~enl~~--~~ 83 (208)
T 3b85_A 16 VDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A-----LQSKQVSRIILTRPAVEAGEKLGFLPGTLNEKIDP--YL 83 (208)
T ss_dssp HHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H-----HHTTSCSEEEEEECSCCTTCCCCSSCC------CT--TT
T ss_pred HHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C-----CcCCeeeeEEecCCchhhhcceEEecCCHHHHHHH--HH
Confidence 8885 89999999999999999999999999 9 9999995311 134689999986 2200 00
Q ss_pred ccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccc
Q 015952 164 FSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 243 (397)
Q Consensus 164 ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~L 243 (397)
..+.+.+.- ... ...+.++++. ++ |||||++|||||+.+|++| +||||| ++
T Consensus 84 ~~~~~~~~~-~~~----~~~~~~~l~~-gl------------Gq~qrv~lAraL~~~p~ll--------lLDEPt--s~- 134 (208)
T 3b85_A 84 RPLHDALRD-MVE----PEVIPKLMEA-GI------------VEVAPLAYMRGRTLNDAFV--------ILDEAQ--NT- 134 (208)
T ss_dssp HHHHHHHTT-TSC----TTHHHHHHHT-TS------------EEEEEGGGGTTCCBCSEEE--------EECSGG--GC-
T ss_pred HHHHHHHHH-hcc----HHHHHHHHHh-CC------------chHHHHHHHHHHhcCCCEE--------EEeCCc--cc-
Confidence 122222210 001 1234555655 43 9999999999999999999 666667 33
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEechhHHccccEEEEEeeCCEE
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGDLLSLTDRARIRTYLGEL 298 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~~~~~~aDrI~v~l~~G~i 298 (397)
. .+.+.+++ ...++|+||| +|||. ..++++ ...++|..
T Consensus 135 ---~------~~~l~~~l----~~l~~g~tii-vtHd~--~~~~~~-~~~~~G~~ 172 (208)
T 3b85_A 135 ---T------PAQMKMFL----TRLGFGSKMV-VTGDI--TQVDLP-GGQKSGLR 172 (208)
T ss_dssp ---C------HHHHHHHH----TTBCTTCEEE-EEEC---------------CCH
T ss_pred ---c------HHHHHHHH----HHhcCCCEEE-EECCH--HHHhCc-CCCCCcHH
Confidence 1 12333333 1124589999 99972 123445 23566654
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.90 E-value=9.1e-24 Score=211.44 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=62.4
Q ss_pred cCCCCCChHHHHHHHHHHHHc------CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCC
Q 015952 198 IRRSDSSSLRNRMRCKAHKIG------CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 271 (397)
Q Consensus 198 ~~~~~lSGGqkQRvaIArAL~------~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g 271 (397)
.++.+|||||||||+|||||+ .+|++| +||||| ++||+.... ...+.+.++ .+.|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~l--------llDEpt--~~LD~~~~~--~~~~~l~~l-------~~~g 335 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAF--------FIDEGF--SSLDTENKE--KIASVLKEL-------ERLN 335 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEE--------EEESCC--TTSCHHHHH--HHHHHHHGG-------GGSS
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEE--------EEeCCC--ccCCHHHHH--HHHHHHHHH-------HhCC
Confidence 457789999999999999999 799999 555555 667644333 234444433 2469
Q ss_pred ceEEEEech-hHHccccEEEEEeeCCEEee
Q 015952 272 KPVVVVTHG-DLLSLTDRARIRTYLGELLG 300 (397)
Q Consensus 272 ~TVIivTH~-~~~~~aDrI~v~l~~G~iv~ 300 (397)
+|||+|||+ .....|||+ ++|++|+++.
T Consensus 336 ~tvi~itH~~~~~~~~d~~-~~l~~G~i~~ 364 (365)
T 3qf7_A 336 KVIVFITHDREFSEAFDRK-LRITGGVVVN 364 (365)
T ss_dssp SEEEEEESCHHHHTTCSCE-EEEETTEEC-
T ss_pred CEEEEEecchHHHHhCCEE-EEEECCEEEe
Confidence 999999996 558889999 5799999975
No 70
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.89 E-value=8.3e-26 Score=229.74 Aligned_cols=170 Identities=12% Similarity=0.079 Sum_probs=128.9
Q ss_pred ceeeeEEEcCCc--------------------EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeC-cEEEE
Q 015952 93 MTLSDYDVPKTT--------------------SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG-DGTYF 151 (397)
Q Consensus 93 L~~isl~I~~Ge--------------------~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~-~ig~v 151 (397)
|++|||+|++|+ +++|+||||||||||+|+|+|+++ |++|+|.++|..- +.+++
T Consensus 39 l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~-----p~~GsI~~~g~~~t~~~~v 113 (413)
T 1tq4_A 39 LNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN-----EEEGAAKTGVVEVTMERHP 113 (413)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT-----TSTTSCCCCC----CCCEE
T ss_pred hhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC-----ccCceEEECCeecceeEEe
Confidence 999999999999 999999999999999999999999 9999999998631 23889
Q ss_pred ecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChH--HHHHHHHHHHHcC----------
Q 015952 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL--RNRMRCKAHKIGC---------- 219 (397)
Q Consensus 152 ~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGG--qkQRvaIArAL~~---------- 219 (397)
+|++. ++ .++++||..++.. +..+.++++.+++......+. +||| |+||++|||||+.
T Consensus 114 ~q~~~-~~---~ltv~D~~g~~~~-----~~~~~~~L~~~~L~~~~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~t 183 (413)
T 1tq4_A 114 YKHPN-IP---NVVFWDLPGIGST-----NFPPDTYLEKMKFYEYDFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRT 183 (413)
T ss_dssp EECSS-CT---TEEEEECCCGGGS-----SCCHHHHHHHTTGGGCSEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEEC
T ss_pred ccccc-cC---CeeehHhhcccch-----HHHHHHHHHHcCCCccCCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEe
Confidence 99854 33 5899999877632 134677899999854333344 8999 9999999999999
Q ss_pred CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCccc--ccCCceEEEEech----hHHccccEE
Q 015952 220 EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLS--FRDDKPVVVVTHG----DLLSLTDRA 289 (397)
Q Consensus 220 ~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~--~~~g~TVIivTH~----~~~~~aDrI 289 (397)
+|+++ +||||| ++||+.... ...+.+.++....+.. .....+|+++||. .+.++||++
T Consensus 184 kpdll--------lLDEPt--sgLD~~~~~--~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 184 KVDSD--------ITNEAD--GEPQTFDKE--KVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp CHHHH--------HHHHHT--TCCTTCCHH--HHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred cCccc--------ccCccc--ccCCHHHHH--HHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 88888 888888 899987765 3444444431000000 1124678899992 489999999
No 71
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.89 E-value=2.9e-23 Score=203.87 Aligned_cols=80 Identities=13% Similarity=0.151 Sum_probs=57.0
Q ss_pred CCCCCChHHHHHHHHHHHHc----CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceE
Q 015952 199 RRSDSSSLRNRMRCKAHKIG----CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPV 274 (397)
Q Consensus 199 ~~~~lSGGqkQRvaIArAL~----~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TV 274 (397)
++..||||||||++|||||+ .+|++| +||||| ++||+.... ...+.+.++ .+|+||
T Consensus 216 ~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~l--------llDEp~--~~LD~~~~~--~l~~~l~~~--------~~~~~v 275 (322)
T 1e69_A 216 KLSLLSGGEKALVGLALLFALMEIKPSPFY--------VLDEVD--SPLDDYNAE--RFKRLLKEN--------SKHTQF 275 (322)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEE--------EEESCC--SSCCHHHHH--HHHHHHHHH--------TTTSEE
T ss_pred chhhCCHHHHHHHHHHHHHHHhccCCCCEE--------EEeCCC--CCCCHHHHH--HHHHHHHHh--------cCCCeE
Confidence 45678999999999999997 689999 555555 667644332 233444332 357899
Q ss_pred EEEech-hHHccccEE-EEEeeCCEE
Q 015952 275 VVVTHG-DLLSLTDRA-RIRTYLGEL 298 (397)
Q Consensus 275 IivTH~-~~~~~aDrI-~v~l~~G~i 298 (397)
|++||+ ++...||++ .++|.+|..
T Consensus 276 i~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 276 IVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp EEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred EEEECCHHHHhhCceEEEEEEeCCEE
Confidence 999996 778899986 235777754
No 72
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.87 E-value=2.4e-24 Score=210.65 Aligned_cols=165 Identities=10% Similarity=0.081 Sum_probs=121.4
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----------------CcEEEEecCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----------------GDGTYFLQEYT 156 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----------------~~ig~v~Q~~~ 156 (397)
++.+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.. ..++|++|++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~ 164 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD 164 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----HcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC
Confidence 456899999999999999999999999999999999 999999998851 25899999987
Q ss_pred -CCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCC--eEeecccccc
Q 015952 157 -IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPS--VIRKVNFVIF 232 (397)
Q Consensus 157 -l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~--iLllDEP~~s 232 (397)
+++ .+++++|+.++.... ....+++.+|+.+ ....+.+|| |||++|||||+.+|+ +|
T Consensus 165 ~~~~---~~~v~e~l~~~~~~~-----~d~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lL-------- 225 (302)
T 3b9q_A 165 KAKA---ATVLSKAVKRGKEEG-----YDVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILL-------- 225 (302)
T ss_dssp CCCH---HHHHHHHHHHHHHTT-----CSEEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEE--------
T ss_pred ccCH---HHHHHHHHHHHHHcC-----CcchHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEE--------
Confidence 655 579999997642110 0012456667633 344566778 999999999999999 99
Q ss_pred ccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec-h----------hHHccccEEEEEeeCCEEe
Q 015952 233 VVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-G----------DLLSLTDRARIRTYLGELL 299 (397)
Q Consensus 233 iLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH-~----------~~~~~aDrI~v~l~~G~iv 299 (397)
+|| || +++|.... .+.+. ...|.|+|++|| | .+...++.| .++..|+.+
T Consensus 226 vLD-pt--sglD~~~~-----~~~~~---------~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi-~~i~~Ge~~ 285 (302)
T 3b9q_A 226 VLD-GN--TGLNMLPQ-----AREFN---------EVVGITGLILTKLDGSARGGCVVSVVEELGIPV-KFIGVGEAV 285 (302)
T ss_dssp EEE-GG--GGGGGHHH-----HHHHH---------HHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCE-EEEECSSSG
T ss_pred EEe-CC--CCcCHHHH-----HHHHH---------HhcCCCEEEEeCCCCCCccChheehHHHHCCCE-EEEeCCCCh
Confidence 777 77 77774321 12221 135889999999 2 233556678 468888653
No 73
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.86 E-value=2.6e-25 Score=218.40 Aligned_cols=137 Identities=12% Similarity=0.072 Sum_probs=107.7
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEE-----------------------EcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYD-----------------------VPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~-----------------------I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
...|+++||++.|. ++ ++++++. +++|+++||+||||||||||+++|+|
T Consensus 41 ~~~i~~~~v~~~y~---p~-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~g 112 (312)
T 3aez_A 41 GEQIDLLEVEEVYL---PL-----ARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQA 112 (312)
T ss_dssp TCCCCHHHHHHTHH---HH-----HHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCeEEeeehhhhhh---hH-----HHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHh
Confidence 34689999999993 23 5666654 89999999999999999999999999
Q ss_pred ccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCC---ChhhHHHHHHHHHHHCCCcccccCCCC
Q 015952 126 VFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD---ASDNINMIKLWIMEGVRHGELVIRRSD 202 (397)
Q Consensus 126 l~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~---~~~~~~~~~~~ll~~vgl~~~~~~~~~ 202 (397)
+++ |+.|. ..+++|+|++.+++ . |+.+|+.+... +.....+.+.++++.++-+....++..
T Consensus 113 ll~-----~~~G~-------~~v~~v~qd~~~~~---~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~ 176 (312)
T 3aez_A 113 LLA-----RWDHH-------PRVDLVTTDGFLYP---N-AELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPV 176 (312)
T ss_dssp HHH-----TSTTC-------CCEEEEEGGGGBCC---H-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEE
T ss_pred hcc-----ccCCC-------CeEEEEecCccCCc---c-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcccCCccc
Confidence 999 87664 46899999987765 4 99999876431 222234556677777774333355678
Q ss_pred CChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 203 SSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 203 lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
+||||+||+++|||++.+|+|||+|||
T Consensus 177 lS~G~~qRv~~a~al~~~p~ilIlDep 203 (312)
T 3aez_A 177 YSHLHYDIIPGAEQVVRHPDILILEGL 203 (312)
T ss_dssp EETTTTEEEEEEEEEECSCSEEEEECT
T ss_pred CChhhhhhhhhHHHhccCCCEEEECCc
Confidence 999999999999999999999966666
No 74
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.86 E-value=4.6e-25 Score=202.76 Aligned_cols=166 Identities=11% Similarity=-0.034 Sum_probs=97.1
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECc------eeCcEEEEecCCCCCCCCCCccH
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS------SVGDGTYFLQEYTIPRGSNSFSL 166 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G------~~~~ig~v~Q~~~l~~~~~~ltv 166 (397)
++| .+|++|++++|+||||||||||+|+|+|+++ ...+.+.+.+ .++.++|+||++.++. .+++
T Consensus 12 ~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~-----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~---~~~~ 81 (207)
T 1znw_A 12 ARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP-----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQ---QLID 81 (207)
T ss_dssp ---------CCCEEEEECSTTSSHHHHHHHHHHHST-----TCEECCCEESSCCCTTCCBTTTBEECCHHHHH---HHHH
T ss_pred CCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC-----ceEEcccccccCCcccccCCCeeEecCHHHHH---HHHh
Confidence 888 7999999999999999999999999999986 3322222222 2356899999987665 5677
Q ss_pred HHHHhcCC------C----ChhhHHHHHHHH------HHHCCCc-ccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 167 YDTRSLSD------D----ASDNINMIKLWI------MEGVRHG-ELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 167 ~eni~~~~------~----~~~~~~~~~~~l------l~~vgl~-~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
.+++.... . ...+.++++.+. ++.+|+. ....++..+| ||+.+|+++
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS-----------~l~~~p~~~----- 145 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVT-----------VFLAPPSWQ----- 145 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEE-----------EEEECSCHH-----
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEE-----------EEEECCCHH-----
Confidence 77653221 1 223334444443 3334442 2234455555 566666666
Q ss_pred cccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEee
Q 015952 230 VIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTY 294 (397)
Q Consensus 230 ~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~ 294 (397)
+||||| ++++..++. ...+.+.+++.. +..+.|.|+|+|||| ++.++||||+ +|.
T Consensus 146 ---~LDep~--~~l~~~~d~--~~~~~l~~~l~~--l~~~~g~tvi~vtHdl~~~~~~~d~i~-~l~ 202 (207)
T 1znw_A 146 ---DLQARL--IGRGTETAD--VIQRRLDTARIE--LAAQGDFDKVVVNRRLESACAELVSLL-VGT 202 (207)
T ss_dssp ---HHHHHH--HTTSCSCHH--HHHHHHHHHHHH--HHGGGGSSEEEECSSHHHHHHHHHHHH-C--
T ss_pred ---HHHHHH--HhcCCCCHH--HHHHHHHHHHHH--HhhhccCcEEEECCCHHHHHHHHHHHH-Hhc
Confidence 888888 676543332 122222222200 112458999999995 8999999994 453
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.86 E-value=2.9e-24 Score=220.10 Aligned_cols=189 Identities=10% Similarity=-0.030 Sum_probs=139.3
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
.++++++|+++.|+.+..+ |+++ |+|.+|++++|+||||||||||+++|+|+.+ |++|.|.++|++
T Consensus 129 ~~~l~~~~v~~~~~tg~~v-----ld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~-----~~~G~i~~~G~r~~e 197 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTGVRA-----INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR-----ADVIVVGLIGERGRE 197 (438)
T ss_dssp CCTTTSCCCCSBCCCSCHH-----HHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHHH
T ss_pred CCceEEeccceecCCCceE-----Eeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC-----CCeEEEEEeceecHH
Confidence 3578999999999644334 9999 9999999999999999999999999999999 999999999971
Q ss_pred ---------------CcEEEEecC-CCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCC--cccccCCCCCChHH
Q 015952 146 ---------------GDGTYFLQE-YTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH--GELVIRRSDSSSLR 207 (397)
Q Consensus 146 ---------------~~ig~v~Q~-~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl--~~~~~~~~~lSGGq 207 (397)
+.++|++|+ ..++. ++++.+|+.+... ....-+- .........+|+||
T Consensus 198 v~~~~~~~~~~~~l~r~i~~v~q~~~~~~~---~~~v~~~~~~~ae-----------~~~~~~~~v~~~ld~l~~lS~g~ 263 (438)
T 2dpy_A 198 VKDFIENILGPDGRARSVVIAAPADVSPLL---RMQGAAYATRIAE-----------DFRDRGQHVLLIMDSLTRYAMAQ 263 (438)
T ss_dssp HHHHHHTTTHHHHHHTEEEEEECTTSCHHH---HHHHHHHHHHHHH-----------HHHTTTCEEEEEEECHHHHHHHH
T ss_pred HHHHHHhhccccccCceEEEEECCCCCHHH---HHHHHHHHHHHHH-----------HHHhCCCCHHHHHHhHHHHHHHH
Confidence 458999995 33333 4788888766321 1111111 11223355679999
Q ss_pred HHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccc---cCCc-----eEEEEec
Q 015952 208 NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSF---RDDK-----PVVVVTH 279 (397)
Q Consensus 208 kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~---~~g~-----TVIivTH 279 (397)
|||+|| +.+|++- +++|+.... .+.+++.. ... +.|. ||+++||
T Consensus 264 -qrvslA---l~~p~~t----------------~glD~~~~~------~l~~ll~r--~~~~~~~~GsiT~~~tVlv~tH 315 (438)
T 2dpy_A 264 -REIALA---IGEPPAT----------------KGYPPSVFA------KLPALVER--AGNGIHGGGSITAFYTVLTEGD 315 (438)
T ss_dssp -HHHHHH---TTCCCCS----------------SSCCTTHHH------HHHHHHTT--CSCCSTTSCEEEEEEEEECSSS
T ss_pred -HHHHHH---hCCCccc----------------ccCCHHHHH------HHHHHHHH--HHhccCCCCcccceeEEEEeCC
Confidence 999999 8888774 777765543 33333211 111 2364 9999999
Q ss_pred hhHHccccEEEEEeeCCEEeeeCCcccccCCC
Q 015952 280 GDLLSLTDRARIRTYLGELLGIPPAKQIFDIP 311 (397)
Q Consensus 280 ~~~~~~aDrI~v~l~~G~iv~~g~~~el~~~~ 311 (397)
|.-..+||++ ++|.+|+++.++++.++...|
T Consensus 316 dl~~~iad~v-~~l~dG~Ivl~~~~~~~~~~P 346 (438)
T 2dpy_A 316 DQQDPIADSA-RAILDGHIVLSRRLAEAGHYP 346 (438)
T ss_dssp CSCCHHHHHH-HHHSSEEEEECHHHHHTTCSS
T ss_pred CccchhhceE-EEEeCcEEEEeCCHHHccCCC
Confidence 7338899999 579999999999998887665
No 76
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.85 E-value=1.4e-24 Score=201.93 Aligned_cols=170 Identities=11% Similarity=0.027 Sum_probs=97.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----------eCcEEEEecCCCCCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-----------VGDGTYFLQEYTIPRGS 161 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-----------~~~ig~v~Q~~~l~~~~ 161 (397)
|+||||+|++|++++|+||||||||||+|+|+|++ | |+|.+ |. +..++|+||++.++.
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~------p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~-- 81 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF------P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFE-- 81 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS------T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHH--
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC------C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHH--
Confidence 99999999999999999999999999999999976 4 78887 43 246899999876654
Q ss_pred CCcc-HHHHHh---cCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHH-----HHHHcCCCCeEeecccccc
Q 015952 162 NSFS-LYDTRS---LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCK-----AHKIGCEPSVIRKVNFVIF 232 (397)
Q Consensus 162 ~~lt-v~eni~---~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaI-----ArAL~~~P~iLllDEP~~s 232 (397)
.++ ..+++. +...........+.++++...+... ..++||||+||++| ||+|+.+|+++
T Consensus 82 -~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~il---~~~lsggq~qR~~i~~~~~~~~ll~~~~~~-------- 149 (218)
T 1z6g_A 82 -DKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLF---EMNINGVKQLKKSTHIKNALYIFIKPPSTD-------- 149 (218)
T ss_dssp -HHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEE---EECHHHHHHHTTCSSCCSCEEEEEECSCHH--------
T ss_pred -HhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcEEE---EecHHHHHHHHHHhcCCCcEEEEEeCcCHH--------
Confidence 222 111221 1111000112335566665443211 25679999999999 66666666666
Q ss_pred ccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEE
Q 015952 233 VVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRA 289 (397)
Q Consensus 233 iLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI 289 (397)
+||||| +++|..+.. ...+.+.+.........-.+.+.|+++|+ ++...++++
T Consensus 150 ~Lde~~--~~~d~~~~~--~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~i 204 (218)
T 1z6g_A 150 VLLSRL--LTRNTENQE--QIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNY 204 (218)
T ss_dssp HHHHHH--HHTCCCCHH--HHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHH
T ss_pred HHHHHH--HhcCCCCHH--HHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHH
Confidence 888888 788876654 22222322210000000034556666773 555666665
No 77
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.85 E-value=3.5e-23 Score=206.93 Aligned_cols=164 Identities=10% Similarity=0.081 Sum_probs=121.8
Q ss_pred eeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----------------CcEEEEecCCC-
Q 015952 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----------------GDGTYFLQEYT- 156 (397)
Q Consensus 94 ~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----------------~~ig~v~Q~~~- 156 (397)
..+||++++|++++|+||||||||||+++|+|+++ |++|+|.++|.. ..++|++|++.
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~-----~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~ 222 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK-----NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDK 222 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSS
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc-----ccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccc
Confidence 45899999999999999999999999999999999 999999998851 25899999987
Q ss_pred CCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCC--eEeeccccccc
Q 015952 157 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPS--VIRKVNFVIFV 233 (397)
Q Consensus 157 l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~--iLllDEP~~si 233 (397)
+++ ..++++|+.++..... -..+++.+|+.+ ....+.+|| +||++|||||+.+|+ +| +
T Consensus 223 ~~p---~~tv~e~l~~~~~~~~-----d~~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lL--------v 283 (359)
T 2og2_A 223 AKA---ATVLSKAVKRGKEEGY-----DVVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILL--------V 283 (359)
T ss_dssp CCH---HHHHHHHHHHHHHTTC-----SEEEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEE--------E
T ss_pred cCh---hhhHHHHHHHHHhCCC-----HHHHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEE--------E
Confidence 655 5799999976431100 012455666633 344466778 999999999999999 98 7
Q ss_pred cchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec-h----------hHHccccEEEEEeeCCEEe
Q 015952 234 VDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-G----------DLLSLTDRARIRTYLGELL 299 (397)
Q Consensus 234 LDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH-~----------~~~~~aDrI~v~l~~G~iv 299 (397)
|| || +++|.... .+.+. ...|.|+|++|| | .+...+..| .++..|+.+
T Consensus 284 LD-pt--tglD~~~~-----~~~~~---------~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI-~~ig~Ge~~ 342 (359)
T 2og2_A 284 LD-GN--TGLNMLPQ-----AREFN---------EVVGITGLILTKLDGSARGGCVVSVVEELGIPV-KFIGVGEAV 342 (359)
T ss_dssp EE-GG--GGGGGHHH-----HHHHH---------HHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCE-EEEECSSSG
T ss_pred Ec-CC--CCCCHHHH-----HHHHH---------HhcCCeEEEEecCcccccccHHHHHHHHhCCCE-EEEeCCCCh
Confidence 78 77 77774322 12221 135889999999 3 233556778 468888643
No 78
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.84 E-value=9.8e-22 Score=177.86 Aligned_cols=137 Identities=11% Similarity=0.046 Sum_probs=85.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEE--EC--ceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhH
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT--YN--SSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI 180 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~--i~--G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~ 180 (397)
.++|+||||||||||+|+|+|++. . ...|... .. ..++.+||++|++.. .+++ +......
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~--i--~~~g~~~~~~~~~~~~~~ig~~~~~~~~---------~~~~-~~~~~~~-- 65 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG--K--RAIGFWTEEVRDPETKKRTGFRIITTEG---------KKKI-FSSKFFT-- 65 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG--G--GEEEEEEEEEC------CCEEEEEETTC---------CEEE-EEETTCC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC--C--cCCCEEhhhhccccccceeEEEeecCcH---------HHHH-HHhhcCC--
Confidence 589999999999999999999986 1 2233221 11 113578999998621 1222 1100000
Q ss_pred HHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHH-----HcCCCCeEeeccccccccchhhhhccccccchhhhHHHH
Q 015952 181 NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK-----IGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 255 (397)
Q Consensus 181 ~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArA-----L~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~ 255 (397)
.-....+++.++|||||||++|||| ++.+|+++++||+ + || +++|+. ..+
T Consensus 66 -----------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEi-----g-p~--~~ld~~------~~~ 120 (178)
T 1ye8_A 66 -----------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEI-----G-KM--ELFSKK------FRD 120 (178)
T ss_dssp -----------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCC-----S-TT--GGGCHH------HHH
T ss_pred -----------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCC-----C-Cc--ccCCHH------HHH
Confidence 0012345577899999999999996 9999999955550 0 55 566632 234
Q ss_pred HHHHhcCCCcccccCCceEEEEec---h--hHHccccE
Q 015952 256 IVATTFNCPYLSFRDDKPVVVVTH---G--DLLSLTDR 288 (397)
Q Consensus 256 ~i~~l~~~~~~~~~~g~TVIivTH---~--~~~~~aDr 288 (397)
.+.+++ .+.+.|+|++|| + .+..+|+|
T Consensus 121 ~l~~~l------~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 121 LVRQIM------HDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHHH------TCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHHH------hcCCCeEEEEEccCCCchHHHHHHhc
Confidence 444443 125677999996 3 77778887
No 79
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.83 E-value=7.5e-23 Score=196.96 Aligned_cols=137 Identities=15% Similarity=0.159 Sum_probs=82.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC-
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA- 176 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~- 176 (397)
.++|+||||||||||+|+|+|+.. |++|+|.++|. ++.+||++|++.++. .+||.||+.++...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~-----~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~---~ltv~d~~~~g~~~~ 75 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQV-----SRKASSWNREEKIPKTVEIKAIGHVIEEGGVKM---KLTVIDTPGFGDQIN 75 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-----------------CCCCCSCCEEEESCC----CC---EEEEECCCC--CCSB
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC-----CCCCccccCCcccCcceeeeeeEEEeecCCCcC---CceEEechhhhhhcc
Confidence 489999999999999999999999 99999999986 367999999988876 68999999998652
Q ss_pred hhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHH
Q 015952 177 SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQI 256 (397)
Q Consensus 177 ~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~ 256 (397)
.....+.+.+++.. ......+.+||||||||+++|||++. ++ +||||+ .+||+. + .+.
T Consensus 76 ~~~~~~~i~~~~~~---~~~~~~~~~LS~G~~qrv~iaRal~~---ll--------lldep~--~gL~~l-D-----~~~ 133 (270)
T 3sop_A 76 NENCWEPIEKYINE---QYEKFLKEEVNIARKKRIPDTRVHCC---LY--------FISPTG--HSLRPL-D-----LEF 133 (270)
T ss_dssp CTTCSHHHHHHHHH---HHHHHHHHHSCTTCCSSCCCCSCCEE---EE--------EECCCS--SSCCHH-H-----HHH
T ss_pred cHHHHHHHHHHHHH---HHHhhhHHhcCcccchhhhhheeeee---eE--------EEecCC--CcCCHH-H-----HHH
Confidence 11111222223221 11233356799999999999999886 88 666666 566632 1 233
Q ss_pred HHHhcCCCcccccCCceEEEEec
Q 015952 257 VATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 257 i~~l~~~~~~~~~~g~TVIivTH 279 (397)
+..+. +. ++||+|.|
T Consensus 134 l~~L~-------~~-~~vI~Vi~ 148 (270)
T 3sop_A 134 MKHLS-------KV-VNIIPVIA 148 (270)
T ss_dssp HHHHH-------TT-SEEEEEET
T ss_pred HHHHH-------hc-CcEEEEEe
Confidence 33331 23 67777777
No 80
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.83 E-value=3.4e-22 Score=197.56 Aligned_cols=130 Identities=12% Similarity=0.134 Sum_probs=94.8
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
++++||.+++|++++|+||||||||||+|+|+|+++ |++|.|.++|... ..+.. ..+.+.+
T Consensus 161 l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~-----~~~g~i~i~~~~e--------~~~~~------~~~~i~~ 221 (330)
T 2pt7_A 161 ISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP-----KEERIISIEDTEE--------IVFKH------HKNYTQL 221 (330)
T ss_dssp HHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC-----TTSCEEEEESSCC--------CCCSS------CSSEEEE
T ss_pred HhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc-----CCCcEEEECCeec--------ccccc------chhEEEE
Confidence 889999999999999999999999999999999999 9999999988521 11110 0000111
Q ss_pred CCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhH
Q 015952 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 252 (397)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~ 252 (397)
. . + |||+||++|||||..+|++| +||||| + .+
T Consensus 222 ~--~-------------------------g--gg~~~r~~la~aL~~~p~il--------ildE~~--~------~e--- 253 (330)
T 2pt7_A 222 F--F-------------------------G--GNITSADCLKSCLRMRPDRI--------ILGELR--S------SE--- 253 (330)
T ss_dssp E--C-------------------------B--TTBCHHHHHHHHTTSCCSEE--------EECCCC--S------TH---
T ss_pred E--e-------------------------C--CChhHHHHHHHHhhhCCCEE--------EEcCCC--h------HH---
Confidence 0 0 0 89999999999999999999 555555 2 11
Q ss_pred HHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCE
Q 015952 253 YNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGE 297 (397)
Q Consensus 253 ~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~ 297 (397)
..+.+..+ ...+.|+|++||+ .+...|||+ ++|.+|.
T Consensus 254 ~~~~l~~~-------~~g~~tvi~t~H~~~~~~~~dri-~~l~~g~ 291 (330)
T 2pt7_A 254 AYDFYNVL-------CSGHKGTLTTLHAGSSEEAFIRL-ANMSSSN 291 (330)
T ss_dssp HHHHHHHH-------HTTCCCEEEEEECSSHHHHHHHH-HHHHHTS
T ss_pred HHHHHHHH-------hcCCCEEEEEEcccHHHHHhhhh-eehhcCC
Confidence 22333322 1234589999994 788899999 5687764
No 81
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.82 E-value=1.3e-21 Score=194.69 Aligned_cols=191 Identities=8% Similarity=-0.043 Sum_probs=127.8
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee---
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--- 145 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--- 145 (397)
.++++++++++.|+.+..+ |+++ |+|.+|++++|+||||||||||+++|+|+.. |+.|.|.+.|++
T Consensus 43 ~~~i~~~~l~~~~~tg~~a-----ld~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~-----~~~g~i~~~G~~~~e 111 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVRA-----IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS-----ADIIVLALIGERGRE 111 (347)
T ss_dssp SCSTTCCCCCSEECCSCHH-----HHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC-----CSEEEEEEESCCHHH
T ss_pred CCCeeecccceecCCCCEE-----EEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC-----CCEEEEEEecccHHH
Confidence 3578999999999644323 9999 9999999999999999999999999999999 999999998863
Q ss_pred --------------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc--ccccCCCCCChHHHH
Q 015952 146 --------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG--ELVIRRSDSSSLRNR 209 (397)
Q Consensus 146 --------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~--~~~~~~~~lSGGqkQ 209 (397)
+.+.+++|... ...+.+.... .. ....+.+...+-. ...+.+..+|+|| |
T Consensus 112 v~~~i~~~~~~~~~~~v~~~~~~~~--------~~~~r~~~~~----~~-~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r 177 (347)
T 2obl_A 112 VNEFLALLPQSTLSKCVLVVTTSDR--------PALERMKAAF----TA-TTIAEYFRDQGKNVLLMMDSVTRYARAA-R 177 (347)
T ss_dssp HHHHHTTSCHHHHTTEEEEEECTTS--------CHHHHHHHHH----HH-HHHHHHHHTTTCEEEEEEETHHHHHHHH-H
T ss_pred HHHHHHhhhhhhhhceEEEEECCCC--------CHHHHHHHHH----HH-HHHHHHHHhccccHHHHHhhHHHHHHHH-H
Confidence 12344444211 1111110000 00 0011111111111 1124566779999 9
Q ss_pred HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccc-cCCc-----eEEEEechhHH
Q 015952 210 MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSF-RDDK-----PVVVVTHGDLL 283 (397)
Q Consensus 210 RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~-~~g~-----TVIivTH~~~~ 283 (397)
|+++| +.+|++- +++|+.. ...+.+++.. ... +.|. ||+++|||.-.
T Consensus 178 ~v~la---l~~p~~t----------------~Gldp~~------~~~l~~ller--~~~~~~GsiT~~~tVl~~thdl~~ 230 (347)
T 2obl_A 178 DVGLA---SGEPDVR----------------GGFPPSV------FSSLPKLLER--AGPAPKGSITAIYTVLLESDNVND 230 (347)
T ss_dssp HHHHH---TTCCCCB----------------TTBCHHH------HHHHHHHHTT--CEECSSSEEEEEEEEECCSSCCCC
T ss_pred HHHHH---cCCCCcc----------------cCCCHHH------HHHHHHHHHH--HhCCCCCCeeeEEEEEEeCCCCCC
Confidence 99999 5777763 6666433 2344444321 112 3577 99999997337
Q ss_pred ccccEEEEEeeCCEEeeeCCcccccCCCC
Q 015952 284 SLTDRARIRTYLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 284 ~~aDrI~v~l~~G~iv~~g~~~el~~~~~ 312 (397)
.+||++ +++.+|+|+.++++.++...|.
T Consensus 231 ~i~d~v-~~i~dG~Ivl~~~l~~~~~~Pa 258 (347)
T 2obl_A 231 PIGDEV-RSILDGHIVLTRELAEENHFPA 258 (347)
T ss_dssp HHHHHH-HHHCSEEEEBCHHHHTTTCSSC
T ss_pred hhhhhe-EEeeCcEEEEeCCHHHcCCCCC
Confidence 889999 5699999999999988876664
No 82
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.81 E-value=2.4e-21 Score=186.91 Aligned_cols=180 Identities=12% Similarity=0.026 Sum_probs=105.9
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc-EEEECcee-------CcEEEEecCCCCCCCCCCc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSV-------GDGTYFLQEYTIPRGSNSF 164 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G-~I~i~G~~-------~~ig~v~Q~~~l~~~~~~l 164 (397)
|+++++.|++|++++|+||||||||||++.|+|+.. |++| .|.+.+.. .++.+++|... +
T Consensus 25 Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~-----~~~G~~v~~~~~e~~~~~~~~r~~~~~~~~~-------~ 92 (296)
T 1cr0_A 25 INDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG-----TAMGKKVGLAMLEESVEETAEDLIGLHNRVR-------L 92 (296)
T ss_dssp HHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH-----HTSCCCEEEEESSSCHHHHHHHHHHHHTTCC-------G
T ss_pred HHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH-----HHcCCeEEEEeCcCCHHHHHHHHHHHHcCCC-------h
Confidence 999999999999999999999999999999999999 8878 67543321 12222222211 2
Q ss_pred cHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHH-HHHHHHHHHHcCCCCeEeeccccccccchhhhhccc
Q 015952 165 SLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLR-NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSM 243 (397)
Q Consensus 165 tv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGq-kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~L 243 (397)
++.+++..+....++..+.+.++++..++. ....+..+|.+| +||+. |++++.+|++|++||| +++++.. ..+
T Consensus 93 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~l~-i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDep-t~~~~~~---~~~ 166 (296)
T 1cr0_A 93 RQSDSLKREIIENGKFDQWFDELFGNDTFH-LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHI-SIVVSAS---GES 166 (296)
T ss_dssp GGCHHHHHHHHHHTHHHHHHHHHHSSSCEE-EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEE-C------------
T ss_pred hhccccccCCCCHHHHHHHHHHHhccCCEE-EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCc-cccCCCC---CCC
Confidence 222233221111223334445555433432 223356789998 66666 9999999999955555 2222110 001
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEech------------------------hHHccccEEEEEeeCCEE
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG------------------------DLLSLTDRARIRTYLGEL 298 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~------------------------~~~~~aDrI~v~l~~G~i 298 (397)
|.. .......+.+.++ ..+.|+|||++||+ .+..+||+| ++|++|+.
T Consensus 167 d~~-~~~~~i~~~L~~l------a~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~v-i~L~~~~~ 237 (296)
T 1cr0_A 167 DER-KMIDNLMTKLKGF------AKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTI-IALERNQQ 237 (296)
T ss_dssp --C-HHHHHHHHHHHHH------HHHHCCEEEEEEECC-----------------CCC---CHHHHCSEE-EEEEEC--
T ss_pred CHH-HHHHHHHHHHHHH------HHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEE-EEEecCcc
Confidence 210 1111233333332 12358999999995 466799999 57998875
No 83
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.80 E-value=1.5e-19 Score=180.62 Aligned_cols=81 Identities=14% Similarity=0.121 Sum_probs=61.8
Q ss_pred CCChHHHHHHHHHHHHc---------CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCc
Q 015952 202 DSSSLRNRMRCKAHKIG---------CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDK 272 (397)
Q Consensus 202 ~lSGGqkQRvaIArAL~---------~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~ 272 (397)
.+|||||||++||++|+ .+|++| +||||| +.||+.... ...+.+.++ +.
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iL--------LLDEp~--s~LD~~~~~--~l~~~l~~~----------~q 322 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVL--------LLDDFT--AELDPHRRQ--YLLDLAASV----------PQ 322 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEE--------EECCGG--GCCCHHHHH--HHHHHHHHS----------SE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEE--------EEeCcc--ccCCHHHHH--HHHHHHHhc----------Cc
Confidence 47999999999999999 899999 555555 777754333 233333221 26
Q ss_pred eEEEEechhHHccccEEEEEeeCCEEeeeCCcccc
Q 015952 273 PVVVVTHGDLLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 273 TVIivTH~~~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
|+|++||... .||++ ++|++|+++..|+++++
T Consensus 323 t~i~~th~~~--~~~~i-~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 323 AIVTGTELAP--GAALT-LRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEESSCCT--TCSEE-EEEETTEEEECCCTTTS
T ss_pred EEEEEEeccc--cCCEE-EEEECCEEEecCCHHHH
Confidence 9999999422 89999 57999999999999887
No 84
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.78 E-value=4.7e-20 Score=205.68 Aligned_cols=172 Identities=13% Similarity=0.081 Sum_probs=110.7
Q ss_pred CCeEEEEe-----EEEEECCCceEeeccCceeeeEEEcC-------CcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcc
Q 015952 69 GSLTDAKN-----KILSYTPGAWIENVGGMTLSDYDVPK-------TTSLLLIGPKGSGKSSLVNRISKVFENDKFASER 136 (397)
Q Consensus 69 ~~~lel~n-----vs~~Y~~~~~v~~~~~L~~isl~I~~-------Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~ 136 (397)
.++|+++| |++.|.++..+ ++|++|++++ |++++|+||||||||||||+| |++. +.
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v-----~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~-----~~- 815 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFI-----PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA-----VM- 815 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCC-----CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH-----HH-
T ss_pred CceEEEEeccccEEEEEecCCceE-----eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH-----HH-
Confidence 45799999 99999434435 9999999987 999999999999999999999 9988 52
Q ss_pred cEEEECceeCcEE-EEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHH
Q 015952 137 AQVTYNSSVGDGT-YFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKA 214 (397)
Q Consensus 137 G~I~i~G~~~~ig-~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIA 214 (397)
.++| ||||++. .+++.|++.. ++|+. ........+|+++++ +++|
T Consensus 816 ---------aqiG~~Vpq~~~------~l~v~d~I~~-----------------rig~~d~~~~~~stf~~em~~-~a~a 862 (1022)
T 2o8b_B 816 ---------AQMGCYVPAEVC------RLTPIDRVFT-----------------RLGASDRIMSGESTFFVELSE-TASI 862 (1022)
T ss_dssp ---------HTTTCCEESSEE------EECCCSBEEE-----------------ECC---------CHHHHHHHH-HHHH
T ss_pred ---------hheeEEeccCcC------CCCHHHHHHH-----------------HcCCHHHHhhchhhhHHHHHH-HHHH
Confidence 2456 9999863 3567776532 12321 111223445777665 9999
Q ss_pred HHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEE
Q 015952 215 HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIR 292 (397)
Q Consensus 215 rAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~ 292 (397)
++++.+|+++ +||||+ +++|+.... ......+..+. .+.|.++|++||+ .+..+||++. +
T Consensus 863 l~la~~~sLl--------LLDEp~--~Gtd~~dg~-~~~~~il~~L~------~~~g~~vl~~TH~~el~~~~~d~~~-v 924 (1022)
T 2o8b_B 863 LMHATAHSLV--------LVDELG--RGTATFDGT-AIANAVVKELA------ETIKCRTLFSTHYHSLVEDYSQNVA-V 924 (1022)
T ss_dssp HHHCCTTCEE--------EEECTT--TTSCHHHHH-HHHHHHHHHHH------HTSCCEEEEECCCHHHHHHTSSCSS-E
T ss_pred HHhCCCCcEE--------EEECCC--CCCChHHHH-HHHHHHHHHHH------hcCCCEEEEEeCCHHHHHHhCCcce-e
Confidence 9999999999 555556 777744322 11223333321 1248999999994 7778899994 3
Q ss_pred eeCCEEe--eeCCc
Q 015952 293 TYLGELL--GIPPA 304 (397)
Q Consensus 293 l~~G~iv--~~g~~ 304 (397)
+ +|++. ..|++
T Consensus 925 ~-~g~~~~~~~~~~ 937 (1022)
T 2o8b_B 925 R-LGHMACMVENEC 937 (1022)
T ss_dssp E-EEEEEEC-----
T ss_pred e-cCeEEEEEecCc
Confidence 4 68887 44444
No 85
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.78 E-value=1.1e-19 Score=189.77 Aligned_cols=156 Identities=16% Similarity=0.116 Sum_probs=107.5
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHh-cCCC
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS-LSDD 175 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~-~~~~ 175 (397)
+..|++|++++|+||||||||||+++++|+.. |. |+ +.+.|++|++. ..+..+.. ++..
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~-----~~-G~-------~vi~~~~ee~~-------~~l~~~~~~~g~~ 334 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENAC-----AN-KE-------RAILFAYEESR-------AQLLRNAYSWGMD 334 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHH-----TT-TC-------CEEEEESSSCH-------HHHHHHHHTTSCC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-----hC-CC-------CEEEEEEeCCH-------HHHHHHHHHcCCC
Confidence 45899999999999999999999999999998 74 43 12456778742 23444432 2211
Q ss_pred ChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHH
Q 015952 176 ASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYN 254 (397)
Q Consensus 176 ~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~ 254 (397)
..+ +...|+ .....+|.++||||+||+++|+++..+|++| ++| || ++||..... .+..
T Consensus 335 --------~~~-~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~ll--------ilD-p~--~~Ld~~~~~-~~~~ 393 (525)
T 1tf7_A 335 --------FEE-MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARI--------AID-SL--SALARGVSN-NAFR 393 (525)
T ss_dssp --------HHH-HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEE--------EEE-CH--HHHTSSSCH-HHHH
T ss_pred --------HHH-HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEE--------EEc-Ch--HHHHhhCCh-HHHH
Confidence 111 224555 3345567889999999999999999999999 666 66 777765221 1123
Q ss_pred HHHHHhcCCCcccccCCceEEEEechh------------HHccccEEEEEeeCCE
Q 015952 255 QIVATTFNCPYLSFRDDKPVVVVTHGD------------LLSLTDRARIRTYLGE 297 (397)
Q Consensus 255 ~~i~~l~~~~~~~~~~g~TVIivTH~~------------~~~~aDrI~v~l~~G~ 297 (397)
+.+.+++.. + ++.|+|||++||+. +..+||+| ++|++|+
T Consensus 394 ~~i~~ll~~--l-~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~v-i~L~~ge 444 (525)
T 1tf7_A 394 QFVIGVTGY--A-KQEEITGLFTNTSDQFMGAHSITDSHISTITDTI-ILLQYVE 444 (525)
T ss_dssp HHHHHHHHH--H-HHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEE-EEEEEEE
T ss_pred HHHHHHHHH--H-HhCCCEEEEEECcccccCcccccCcccceeeeEE-EEEEEEE
Confidence 333333210 1 24699999999963 46789999 5799887
No 86
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.76 E-value=2.2e-20 Score=175.93 Aligned_cols=122 Identities=7% Similarity=0.015 Sum_probs=80.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
|+|+||++++|+++||+||||||||||+++|+|++. . +.++..++.++|++|+. ++. .+++.+++.+
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-----~----~~~~~~~~~i~~v~~d~-~~~---~l~~~~~~~~ 81 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-----Q----NEVEQRQRKVVILSQDR-FYK---VLTAEQKAKA 81 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHHT-----G----GGSCGGGCSEEEEEGGG-GBC---CCCHHHHHHH
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-----h----hcccccCCceEEEeCCc-Ccc---ccCHhHhhhh
Confidence 999999999999999999999999999999999764 1 22223356799999995 444 4789888765
Q ss_pred CCC------ChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 173 SDD------ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 173 ~~~------~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
... ......+.+.+.++.+. .....++..+|+||+||+++ ++++.+|+++++|||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~L~~l~-~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 82 LKGQYNFDHPDAFDNDLMHRTLKNIV-EGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HTTCCCTTSGGGBCHHHHHHHHHHHH-TTCCEEECCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred hccCCCCCCcccccHHHHHHHHHHHH-CCCCeecccccccccCccCc-eEEecCCCEEEEeCc
Confidence 322 11111233344444431 22344577889999999988 688999999966655
No 87
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.75 E-value=3.6e-20 Score=169.39 Aligned_cols=145 Identities=12% Similarity=0.112 Sum_probs=101.1
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCC-Chh
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD-ASD 178 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~-~~~ 178 (397)
.++|++++|+||||||||||+++|+|++. | .++|++|++.++.. ..+++.++..+... ...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~-----~------------~i~~v~~d~~~~~~-~~~~~~~~~~~~~~~~~~ 64 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLG-----E------------RVALLPMDHYYKDL-GHLPLEERLRVNYDHPDA 64 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHG-----G------------GEEEEEGGGCBCCC-TTSCHHHHHHSCTTSGGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhC-----C------------CeEEEecCccccCc-ccccHHHhcCCCCCChhh
Confidence 57899999999999999999999999998 6 58999999876531 24688888766433 222
Q ss_pred hHHHHHHHHHHHCCCc-ccccCCCCCChHH----HHHHHHHHHHcCCCCeEeeccccccccchhhhhcc-------cccc
Q 015952 179 NINMIKLWIMEGVRHG-ELVIRRSDSSSLR----NRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS-------MEGD 246 (397)
Q Consensus 179 ~~~~~~~~ll~~vgl~-~~~~~~~~lSGGq----kQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~-------LD~~ 246 (397)
...+.+.++++.+++. .....+.++|+|| +||+++|++++.+|.++ ++|||| +. ||..
T Consensus 65 ~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll--------~~de~~--~~~~d~~i~ld~~ 134 (211)
T 3asz_A 65 FDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILV--------LYPKEL--RDLMDLKVFVDAD 134 (211)
T ss_dssp BCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTT--------TSSHHH--HTTCSEEEEEECC
T ss_pred hhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhh--------ccCHHH--HHhcCEEEEEeCC
Confidence 2234566677888774 3444567789996 47888889999999888 556665 34 6755
Q ss_pred chhhhHHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 247 SDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 247 ~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
.+. ...+.+.+.. .++|+|+++++|+
T Consensus 135 ~~~--~~~r~l~r~~------~~~g~t~~~~~~~ 160 (211)
T 3asz_A 135 ADE--RFIRRLKRDV------LERGRSLEGVVAQ 160 (211)
T ss_dssp HHH--HHHHHHHHHH------HHSCCCHHHHHHH
T ss_pred HHH--HHHHHHHHHH------HHhCCCHHHHHHH
Confidence 443 2333333321 2368899999994
No 88
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.75 E-value=1.8e-17 Score=163.84 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=55.8
Q ss_pred cCCCCCChHHHH------HHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCC
Q 015952 198 IRRSDSSSLRNR------MRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDD 271 (397)
Q Consensus 198 ~~~~~lSGGqkQ------RvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g 271 (397)
.++.+||||||| |+++||||+.+|++| +||||| ++||+.... ...+.+.++ ...|
T Consensus 244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~l--------llDEp~--~~LD~~~~~--~l~~~l~~~-------~~~~ 304 (339)
T 3qkt_A 244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLL--------ILDEPT--PYLDEERRR--KLITIMERY-------LKKI 304 (339)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEE--------EEECCC--TTCCHHHHH--HHHHHHHHT-------GGGS
T ss_pred CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEE--------EEECCC--CCCCHHHHH--HHHHHHHHH-------HhcC
Confidence 456789999999 678889999999999 555555 677754333 334444443 2457
Q ss_pred ceEEEEech-hHHccccEEEEEee
Q 015952 272 KPVVVVTHG-DLLSLTDRARIRTY 294 (397)
Q Consensus 272 ~TVIivTH~-~~~~~aDrI~v~l~ 294 (397)
.|||+|||+ ++...||++ ++|+
T Consensus 305 ~~vi~~sH~~~~~~~~d~~-~~l~ 327 (339)
T 3qkt_A 305 PQVILVSHDEELKDAADHV-IRIS 327 (339)
T ss_dssp SEEEEEESCGGGGGGCSEE-EEEE
T ss_pred CEEEEEEChHHHHHhCCEE-EEEE
Confidence 899999995 788999999 4564
No 89
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.73 E-value=2.1e-19 Score=175.74 Aligned_cols=140 Identities=14% Similarity=0.121 Sum_probs=96.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----------------CcEEEEecCCCCCCCCCCcc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----------------GDGTYFLQEYTIPRGSNSFS 165 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----------------~~ig~v~Q~~~l~~~~~~lt 165 (397)
+|++++|+||||||||||+++|+|+++ |++|+|.+.|.. ..++|++|++.+++ ..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~-----~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p---~~~ 172 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-----NLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDS---AAL 172 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-----TTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCH---HHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHH-----hcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCH---HHH
Confidence 699999999999999999999999999 999999998862 35899999987765 578
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccc
Q 015952 166 LYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 245 (397)
Q Consensus 166 v~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~ 245 (397)
+++|+.++.. ......+++..|+.+ ......+..++||++||||++.+|+.+++ +||..|.
T Consensus 173 v~~~v~~~~~-----~~~d~~llDt~G~~~--~~~~~~~eLs~~r~~iaRal~~~P~~~lL------vLDa~t~------ 233 (304)
T 1rj9_A 173 AYDAVQAMKA-----RGYDLLFVDTAGRLH--TKHNLMEELKKVKRAIAKADPEEPKEVWL------VLDAVTG------ 233 (304)
T ss_dssp HHHHHHHHHH-----HTCSEEEECCCCCCT--TCHHHHHHHHHHHHHHHHHCTTCCSEEEE------EEETTBC------
T ss_pred HHHHHHHHHh-----CCCCEEEecCCCCCC--chHHHHHHHHHHHHHHHHhhcCCCCeEEE------EEcHHHH------
Confidence 9999865321 000000122223211 11111266779999999999999996644 7885552
Q ss_pred cchhhhHHHHHHHHhcCCCcccccCCceEEEEec
Q 015952 246 DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 246 ~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH 279 (397)
. ..++.+.++. ...|.|+|++||
T Consensus 234 ---~--~~~~~~~~~~------~~~~~t~iivTh 256 (304)
T 1rj9_A 234 ---Q--NGLEQAKKFH------EAVGLTGVIVTK 256 (304)
T ss_dssp ---T--HHHHHHHHHH------HHHCCSEEEEEC
T ss_pred ---H--HHHHHHHHHH------HHcCCcEEEEEC
Confidence 1 1223333221 124789999999
No 90
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.73 E-value=2.9e-19 Score=166.20 Aligned_cols=177 Identities=10% Similarity=0.002 Sum_probs=93.5
Q ss_pred eEEEEeEEEEECCCceEeeccCceeee-EEEcCCcEEEEECCCCCcHHHHHHHHH--cccCCCCCCCcccEEEECcee--
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSD-YDVPKTTSLLLIGPKGSGKSSLVNRIS--KVFENDKFASERAQVTYNSSV-- 145 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~is-l~I~~Ge~vaLvGpnGsGKSTLl~~I~--Gl~~~~~~~p~~G~I~i~G~~-- 145 (397)
++++++++..|.. |+.+- =.|++|++++|+||||||||||+++|+ |+.. +..|.+.+++..
T Consensus 6 ~~~~~~i~tg~~~---------lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~-----~~~~~~~~~~~~~~ 71 (251)
T 2ehv_A 6 YQPVRRVKSGIPG---------FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE-----YGEPGVFVTLEERA 71 (251)
T ss_dssp --CCCEECCSCTT---------TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSCH
T ss_pred ccccceeecCCHh---------HHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh-----CCCeEEEEEccCCH
Confidence 5666666655532 44331 178999999999999999999999999 7756 677777776641
Q ss_pred -------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHc
Q 015952 146 -------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 146 -------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
+.+|+++|++.... .+++.++....... .. ..........+-++.++...+..-.
T Consensus 72 ~~~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~------~~---------~~~~~~~~~~~~~~~~~~~~~~l~~ 133 (251)
T 2ehv_A 72 RDLRREMASFGWDFEKYEKEG---KIAIVDGVSSVVGL------PS---------EEKFVLEDRFNVDNFLRYIYRVVKA 133 (251)
T ss_dssp HHHHHHHHTTTCCHHHHHHTT---SEEEEC----------------------------------CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHhhcC---CEEEEEcccccccc------cc---------ccceeccCcccHHHHHHHHHHHHHh
Confidence 23455555432222 23333322111000 00 0000001122345555555555556
Q ss_pred CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech--hH---------Hccc-
Q 015952 219 CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DL---------LSLT- 286 (397)
Q Consensus 219 ~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~---------~~~a- 286 (397)
.+|+++++||| | +.+|...+. ....+.+.+++.. + ++.|+|||++||+ ++ ..+|
T Consensus 134 ~~p~~lilDep--------~--~~ld~~~d~-~~~~~~l~~l~~~--l-~~~g~tii~vtH~~~~~~~~~~~~~i~~~~a 199 (251)
T 2ehv_A 134 INAKRLVIDSI--------P--SIALRLEEE-RKIREVLLKLNTI--L-LEMGVTTILTTEAPDPQHGKLSRYGIEEFIA 199 (251)
T ss_dssp TTCSEEEEECH--------H--HHHHHSSSG-GGHHHHHHHHHHH--H-HHHCCEEEEEECCC----CCSSSSSCGGGGC
T ss_pred hCCCEEEEccH--------H--HHHhhcCCH-HHHHHHHHHHHHH--H-HHCCCeEEEEECCCCCCcccccccChhhEee
Confidence 89999955555 4 444311111 1112222222200 1 2469999999994 55 5788
Q ss_pred cEEEEEee
Q 015952 287 DRARIRTY 294 (397)
Q Consensus 287 DrI~v~l~ 294 (397)
|+| ++|+
T Consensus 200 D~v-i~l~ 206 (251)
T 2ehv_A 200 RGV-IVLD 206 (251)
T ss_dssp SEE-EEEE
T ss_pred eEE-EEEe
Confidence 999 5675
No 91
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.73 E-value=6.3e-21 Score=199.06 Aligned_cols=75 Identities=13% Similarity=0.066 Sum_probs=60.6
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeE-EEcCCcEEEEECCCCCcHHHHHHH--HHcccCCCCCCCcccEEEECce---
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDY-DVPKTTSLLLIGPKGSGKSSLVNR--ISKVFENDKFASERAQVTYNSS--- 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl-~I~~Ge~vaLvGpnGsGKSTLl~~--I~Gl~~~~~~~p~~G~I~i~G~--- 144 (397)
+++.+++.+ |..+..+ |++||| .|++|++++|+||||||||||+++ ++|+.+ |++|.|+++|.
T Consensus 12 ~~~~~~~~~-~~~g~~~-----Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~-----~~~g~i~v~g~~~~ 80 (525)
T 1tf7_A 12 NSEHQAIAK-MRTMIEG-----FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE-----FDEPGVFVTFEETP 80 (525)
T ss_dssp --CCSSCCE-ECCCCTT-----HHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH-----HCCCEEEEESSSCH
T ss_pred Ccccccccc-ccCCchh-----HHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh-----CCCCEEEEEEeCCH
Confidence 455566654 4334323 999999 999999999999999999999999 789999 99999999996
Q ss_pred ------eCcEEEEecCCC
Q 015952 145 ------VGDGTYFLQEYT 156 (397)
Q Consensus 145 ------~~~ig~v~Q~~~ 156 (397)
.+.+||+||++.
T Consensus 81 ~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 81 QDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp HHHHHHHGGGTCCHHHHH
T ss_pred HHHHHHHHHcCCChHHhh
Confidence 246788888754
No 92
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.72 E-value=7.2e-18 Score=175.66 Aligned_cols=77 Identities=17% Similarity=0.128 Sum_probs=56.5
Q ss_pred CCCC-ChHHHHHHHHHHHHcCCC--CeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEE
Q 015952 200 RSDS-SSLRNRMRCKAHKIGCEP--SVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVV 276 (397)
Q Consensus 200 ~~~l-SGGqkQRvaIArAL~~~P--~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIi 276 (397)
+..+ ||||+|||+|||||+.+| ++| +||||| ++||..... ...+.+.++ .+|+|||+
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~l--------ilDEp~--~gld~~~~~--~i~~~l~~~--------~~~~~vi~ 453 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSV--------VFDEVD--AGIGGAAAI--AVAEQLSRL--------ADTRQVLV 453 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEE--------EECSCS--SSCCTHHHH--HHHHHHHHH--------HHHSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEE--------EEeCCc--CCCCHHHHH--HHHHHHHHH--------hCCCEEEE
Confidence 4556 999999999999999999 999 555555 777754433 344444443 23789999
Q ss_pred Eech-hHHccccEEEEEeeCCE
Q 015952 277 VTHG-DLLSLTDRARIRTYLGE 297 (397)
Q Consensus 277 vTH~-~~~~~aDrI~v~l~~G~ 297 (397)
|||+ .+..+|||+ ++|+++.
T Consensus 454 itH~~~~~~~~d~~-~~~~~~~ 474 (517)
T 4ad8_A 454 VTHLAQIAARAHHH-YKVEKQV 474 (517)
T ss_dssp ECCCHHHHHHSSEE-EEEECCE
T ss_pred EecCHHHHHhCCEE-EEEeccc
Confidence 9996 555679999 5686653
No 93
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.72 E-value=9.6e-19 Score=167.47 Aligned_cols=128 Identities=15% Similarity=0.157 Sum_probs=90.3
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc-ccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHh
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 171 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~-~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~ 171 (397)
|+++| +++|++++|+||||||||||+++|+|+++ |+ +|+|.++|. .++|++|+..- + +
T Consensus 17 l~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~-----~~~~G~I~~~g~--~i~~~~~~~~~------~-v----- 75 (261)
T 2eyu_A 17 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIED--PIEYVFKHKKS------I-V----- 75 (261)
T ss_dssp HHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH-----HHCCCEEEEEES--SCCSCCCCSSS------E-E-----
T ss_pred HHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC-----CCCCCEEEEcCC--cceeecCCcce------e-e-----
Confidence 99999 89999999999999999999999999999 98 999999885 34555553210 0 0
Q ss_pred cCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhh
Q 015952 172 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEK 251 (397)
Q Consensus 172 ~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~ 251 (397)
.. ..++++. .. -|++||+||+.+|++|++||| - |+.+.
T Consensus 76 ----~q-----------~~~gl~~-----~~------l~~~la~aL~~~p~illlDEp---~-D~~~~------------ 113 (261)
T 2eyu_A 76 ----NQ-----------REVGEDT-----KS------FADALRAALREDPDVIFVGEM---R-DLETV------------ 113 (261)
T ss_dssp ----EE-----------EEBTTTB-----SC------HHHHHHHHHHHCCSEEEESCC---C-SHHHH------------
T ss_pred ----eH-----------HHhCCCH-----HH------HHHHHHHHHhhCCCEEEeCCC---C-CHHHH------------
Confidence 00 0233321 11 289999999999999977777 2 33331
Q ss_pred HHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEee
Q 015952 252 QYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTY 294 (397)
Q Consensus 252 ~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~ 294 (397)
...+. . ...|.+|+++||+ .+...|||+ +.|.
T Consensus 114 --~~~l~-~-------~~~g~~vl~t~H~~~~~~~~dri-~~l~ 146 (261)
T 2eyu_A 114 --ETALR-A-------AETGHLVFGTLHTNTAIDTIHRI-VDIF 146 (261)
T ss_dssp --HHHHH-H-------HHTTCEEEEEECCSSHHHHHHHH-HHTS
T ss_pred --HHHHH-H-------HccCCEEEEEeCcchHHHHHHHH-hhhc
Confidence 11111 1 1468999999994 677788887 3343
No 94
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.71 E-value=1e-18 Score=160.53 Aligned_cols=154 Identities=10% Similarity=-0.002 Sum_probs=85.9
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCC-----cccEEEECcee----CcEEEEecCCCCCCCCCCccHHHH
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-----ERAQVTYNSSV----GDGTYFLQEYTIPRGSNSFSLYDT 169 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p-----~~G~I~i~G~~----~~ig~v~Q~~~l~~~~~~ltv~en 169 (397)
.|++|++++|+||||||||||+++|+|+..+. + ..|.+.+++.. .++++++|...++. .++.+|
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~---~~~g~~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~ 93 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLP---PEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP----DEVLKH 93 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSC---GGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTSCH----HHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcc---cccCCCCCEEEEEECCCCCCHHHHHHHHHHcCCCH----HHHhhc
Confidence 68999999999999999999999999976611 2 33466666642 24555566554443 255555
Q ss_pred HhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCCh-HHHHHHHHHHHH-------cCCCCeEeeccccccccchhhhhc
Q 015952 170 RSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS-LRNRMRCKAHKI-------GCEPSVIRKVNFVIFVVDGLAVLK 241 (397)
Q Consensus 170 i~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSG-GqkQRvaIArAL-------~~~P~iLllDEP~~siLDEpT~~s 241 (397)
+.+... .++ .+++++..++++ ..+|+++++||| ++.+|... +
T Consensus 94 ~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~-~~~l~~~~--~ 143 (231)
T 4a74_A 94 IYVARA---------------------------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL-TSHFRSEY--I 143 (231)
T ss_dssp EEEEEC---------------------------CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETS-SHHHHHHS--C
T ss_pred EEEEec---------------------------CChHHHHHHHHHHHHHHHHhcccCCceeEEEECCh-HHHhcccc--C
Confidence 544322 112 222223333333 358999966666 44444332 1
Q ss_pred cccccchhh---hHHHHHHHHhcCCCcccccCCceEEEEec----h--hHHccccEEEEEeeCC
Q 015952 242 SMEGDSDVE---KQYNQIVATTFNCPYLSFRDDKPVVVVTH----G--DLLSLTDRARIRTYLG 296 (397)
Q Consensus 242 ~LD~~~~~~---~~~~~~i~~l~~~~~~~~~~g~TVIivTH----~--~~~~~aDrI~v~l~~G 296 (397)
.-+...+.. ...++.+.++ ..+.|+|||++|| + .+...||++ ++|++|
T Consensus 144 ~~~~~~~r~~~~~~~~~~l~~~------~~~~g~tvi~vtH~~~~~g~~~~~~~d~~-l~l~~~ 200 (231)
T 4a74_A 144 GRGALAERQQKLAKHLADLHRL------ANLYDIAVFVTNQVQANGGHILAHSATLR-VYLRKG 200 (231)
T ss_dssp STTHHHHHHHHHHHHHHHHHHH------HHHHTCEEEEEEECC---------CCSEE-EEEEEC
T ss_pred CCcchhHHHHHHHHHHHHHHHH------HHHCCCeEEEEeecccCcchhhHhhceEE-EEEEec
Confidence 100000100 0122233222 1235999999999 3 478899999 568875
No 95
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.71 E-value=1.6e-18 Score=191.53 Aligned_cols=149 Identities=14% Similarity=0.159 Sum_probs=99.4
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHH--------HcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRI--------SKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSF 164 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I--------~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~l 164 (397)
++|+||++++|++++|+||||||||||||+| .|.+- |.++.. ++.+.
T Consensus 652 ~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~v-----pa~~~~--------~~~~d------------ 706 (934)
T 3thx_A 652 PNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFV-----PCESAE--------VSIVD------------ 706 (934)
T ss_dssp CEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCB-----SEEEEE--------EECCS------------
T ss_pred cccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcc-----cccccc--------chHHH------------
Confidence 8999999999999999999999999999999 55555 543221 11110
Q ss_pred cHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCeEeeccccccccchhhhhcc
Q 015952 165 SLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI--GCEPSVIRKVNFVIFVVDGLAVLKS 242 (397)
Q Consensus 165 tv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL--~~~P~iLllDEP~~siLDEpT~~s~ 242 (397)
+++.++|+.+ .....+|+|+++++.+|+++ +.+|+++ +||||| ++
T Consensus 707 ---------------------~i~~~ig~~d--~l~~~lStf~~e~~~~a~il~~a~~~sLl--------LLDEp~--~G 753 (934)
T 3thx_A 707 ---------------------CILARVGAGD--SQLKGVSTFMAEMLETASILRSATKDSLI--------IIDELG--RG 753 (934)
T ss_dssp ---------------------EEEEECC-----------CHHHHHHHHHHHHHHHCCTTCEE--------EEESCS--CS
T ss_pred ---------------------HHHHhcCchh--hHHHhHhhhHHHHHHHHHHHHhccCCcEE--------EEeCCC--CC
Confidence 0111122211 11345688888888888888 9999999 555556 77
Q ss_pred ccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCCcccc
Q 015952 243 MEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 243 LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
+|+.... .....+.+.+ ..+.|+|+|++||+ ++..+||++ ..+.+|++...++++++
T Consensus 754 lD~~~~~--~i~~~il~~l-----~~~~g~~vl~aTH~~el~~lad~~-~~v~ng~v~~~~~~~~l 811 (934)
T 3thx_A 754 TSTYDGF--GLAWAISEYI-----ATKIGAFCMFATHFHELTALANQI-PTVNNLHVTALTTEETL 811 (934)
T ss_dssp SCHHHHH--HHHHHHHHHH-----HHTTCCEEEEEESCGGGGGGGGTC-TTEEEEEEEEEEETTEE
T ss_pred CCHHHHH--HHHHHHHHHH-----HhcCCCEEEEEcCcHHHHHHhccc-ceeEeeEEEEEecCCcE
Confidence 7754333 1212222221 12358999999995 788899999 46999999988777665
No 96
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.70 E-value=3e-18 Score=188.78 Aligned_cols=157 Identities=14% Similarity=0.108 Sum_probs=112.2
Q ss_pred HHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCC----C---------hhhHHHHH
Q 015952 118 SLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD----A---------SDNINMIK 184 (397)
Q Consensus 118 TLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~----~---------~~~~~~~~ 184 (397)
|...|..+.+. |..|+|.++|+.-. + +. .+++.+++.+... . ..+. ...
T Consensus 383 ~C~~C~g~rl~-----~~~~~V~i~G~~i~-----~----~~---~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~-~~~ 444 (916)
T 3pih_A 383 TCSVCGGRRLN-----REALSVKINGLNIH-----E----FT---ELSISEELEFLKNLNLTEREREIVGELLKEI-EKR 444 (916)
T ss_dssp ECTTTCSCCBC-----TTGGGEEETTEEHH-----H----HH---HSBHHHHHHHHHSCCCCTTTTTTHHHHHHHH-HHH
T ss_pred cchhcccccCC-----hHhcCcEECCccHH-----H----hh---hCCHHHHHHHHHhccCcHHHHHHHHhhHHHH-HHH
Confidence 44566677788 99999999997311 0 11 2466666554211 0 0111 234
Q ss_pred HHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcCCCC--eEeeccccccccchhhhhccccccchhhhHHHHHHHHh
Q 015952 185 LWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEPS--VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 260 (397)
Q Consensus 185 ~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P~--iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l 260 (397)
.+.+..+|+++ ..+.+.+|||||||||+|||||+.+|+ +| +||||| ++||+.... ...+.+.++
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~ll--------lLDEPT--~gLD~~~~~--~l~~~L~~L 512 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIY--------VLDEPT--IGLHPRDTE--RLIKTLKKL 512 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEE--------EEECTT--TTCCGGGHH--HHHHHHHHT
T ss_pred HHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEE--------EEECCc--cCCCHHHHH--HHHHHHHHH
Confidence 56788899964 356788999999999999999999887 99 666667 788865443 344555443
Q ss_pred cCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCcccccCCCC
Q 015952 261 FNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 261 ~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~~el~~~~~ 312 (397)
.+.|.|||+|||| ++...|||| ++| ++|++++.|++++++..+.
T Consensus 513 -------~~~G~TvivVtHd~~~~~~aD~i-i~lgpgag~~~G~iv~~G~~~e~~~~~~ 563 (916)
T 3pih_A 513 -------RDLGNTVIVVEHDEEVIRNADHI-IDIGPGGGTNGGRVVFQGTVDELLKNPD 563 (916)
T ss_dssp -------TTTTCEEEEECCCHHHHHTCSEE-EEEESSSGGGCSEEEEEECHHHHHHSCT
T ss_pred -------HhcCCEEEEEeCCHHHHHhCCEE-EEEcCCcccCCCEEEEeechhhhhcCch
Confidence 2469999999996 556679999 569 8999999999999987654
No 97
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.69 E-value=2.8e-19 Score=174.34 Aligned_cols=155 Identities=15% Similarity=0.148 Sum_probs=77.6
Q ss_pred EeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcc-cCCCCCCCcccEEEECce-------eC
Q 015952 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV-FENDKFASERAQVTYNSS-------VG 146 (397)
Q Consensus 75 ~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl-~~~~~~~p~~G~I~i~G~-------~~ 146 (397)
.||++.|+. ..+ +++++|+| +|+||||||||||+|+|.|. .. |++| |.++|. ..
T Consensus 2 ~~l~~~~~~-~~~-----l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~-----~~~g-i~~~g~~~~~t~~~~ 63 (301)
T 2qnr_A 2 SNLPNQVHR-KSV-----KKGFEFTL------MVVGESGLGKSTLINSLFLTDLY-----PERV-ISGAAEKIERTVQIE 63 (301)
T ss_dssp ----------------------CEEE------EEEEETTSSHHHHHHHHHC-----------------------------
T ss_pred CCCcceECC-EEE-----EcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc-----CCCC-cccCCcccCCcceEe
Confidence 578999963 324 99999998 99999999999999999998 77 8888 766554 24
Q ss_pred cEEEEecCCCCCCCCCCccHHHHHhcCCCCh--hhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 147 DGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS--DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 147 ~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~--~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
.+++++|+..++. .++++|+..++.... +..+.....+.+ ....++.++|||||||+++|||++ ++
T Consensus 64 ~~~~~~q~~~~~~---~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~-----~~~~~~~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 64 ASTVEIEERGVKL---RLTVVDTPGYGDAINCRDCFKTIISYIDE-----QFERYLHDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp -CEEEEC---CCE---EEEEEEEC-----------CTTHHHHHHH-----HHHHHHHHHTSSCCTTCCCCCCCE----EE
T ss_pred eEEEEecCCCccc---CcchhhhhhhhhhcCcHHHHHHHHHHHHH-----HHHHHHHHhCHHhhhhhhhhhhhh----ee
Confidence 5789999876654 689999988854311 000111111111 123456678999999999999986 88
Q ss_pred eeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 225 llDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
++||||. .+||+.. .+.+.++ ....+.++|+.+||
T Consensus 132 --------~ldePt~-~~Ld~~~------~~~l~~l------~~~~~iilV~~K~D 166 (301)
T 2qnr_A 132 --------YFISPFG-HGLKPLD------VAFMKAI------HNKVNIVPVIAKAD 166 (301)
T ss_dssp --------EEECSSS-SSCCHHH------HHHHHHH------TTTSCEEEEECCGG
T ss_pred --------eeecCcc-cCCCHHH------HHHHHHH------HhcCCEEEEEEeCC
Confidence 6666662 3477432 2333332 12347788888996
No 98
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.68 E-value=7.9e-18 Score=182.80 Aligned_cols=144 Identities=17% Similarity=0.144 Sum_probs=96.3
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
++|+||+ |++++|+||||||||||+|+|+|+... ++.|.+. ...+..+|+++| ++. .+++.||+..
T Consensus 569 l~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~----~~~G~~v-pa~~~~i~~v~~---i~~---~~~~~d~l~~ 634 (765)
T 1ewq_A 569 PNDLEMA---HELVLITGPNMAGKSTFLRQTALIALL----AQVGSFV-PAEEAHLPLFDG---IYT---RIGASDDLAG 634 (765)
T ss_dssp CEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHH----HTTTCCB-SSSEEEECCCSE---EEE---ECCC------
T ss_pred eeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhh----cccCcee-ehhccceeeHHH---hhc---cCCHHHHHHh
Confidence 8999999 999999999999999999999998630 4666643 222345777766 232 3566665532
Q ss_pred CCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHH--cCCCCeEeeccccccccchh---hhhccccccc
Q 015952 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKI--GCEPSVIRKVNFVIFVVDGL---AVLKSMEGDS 247 (397)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL--~~~P~iLllDEP~~siLDEp---T~~s~LD~~~ 247 (397)
.+|+||+|++.+|+++ +.+|+++ +|||| | +.+|...
T Consensus 635 -----------------------------g~S~~~~e~~~la~il~~a~~p~Ll--------LLDEpgrGT--s~lD~~~ 675 (765)
T 1ewq_A 635 -----------------------------GKSTFMVEMEEVALILKEATENSLV--------LLDEVGRGT--SSLDGVA 675 (765)
T ss_dssp -----------------------------CCSHHHHHHHHHHHHHHHCCTTEEE--------EEESTTTTS--CHHHHHH
T ss_pred -----------------------------cccHHHHHHHHHHHHHHhccCCCEE--------EEECCCCCC--CCcCHHH
Confidence 3589999999999999 9999999 77777 6 6666322
Q ss_pred hhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCC
Q 015952 248 DVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPP 303 (397)
Q Consensus 248 ~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~ 303 (397)
. ...+.+.+ . +.|.|+|++||+ +...+| .- .+.++++..+..
T Consensus 676 ~-----~~~i~~~L----~--~~g~~vl~~TH~~~l~~~~-~~--~v~n~~~~~~~~ 718 (765)
T 1ewq_A 676 I-----ATAVAEAL----H--ERRAYTLFATHYFELTALG-LP--RLKNLHVAAREE 718 (765)
T ss_dssp H-----HHHHHHHH----H--HHTCEEEEECCCHHHHTCC-CT--TEEEEEEEEECC
T ss_pred H-----HHHHHHHH----H--hCCCEEEEEeCCHHHHHhh-hh--cceEEEEEEEEc
Confidence 1 12232322 1 258899999995 556666 21 245555555443
No 99
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.68 E-value=4.1e-19 Score=162.29 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=95.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce--------eCcEEEEecCCCCCCCCCCccHHHHHhcCC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS--------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSD 174 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~--------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~ 174 (397)
|++++|+||||||||||+++|+|+++ ++| |.++|. ++.+||++|+. .. ......++.++.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~------~~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g---~~~~l~~~~~~~ 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK------SSG-VPVDGFYTEEVRQGGRRIGFDVVTL--SG---TRGPLSRVGLEP 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH------HTT-CCCEEEECCEEETTSSEEEEEEEET--TS---CEEEEEECCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc------cCC-EEEcCEecchhHhhhceEEEEEEec--cc---ceehhhcccccC
Confidence 78999999999999999999999986 568 888775 36789999985 11 112111111111
Q ss_pred CChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHH-HHHH---HHcCCCCeEeeccccccccchhhhhccccccchh
Q 015952 175 DASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMR-CKAH---KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV 249 (397)
Q Consensus 175 ~~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRv-aIAr---AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~ 249 (397)
.. ... .....+...+|+|||+++ ++++ |++.+|+++|+||| -|+ ..+|.
T Consensus 69 ~~--------------~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~------g~~--~~~~~---- 122 (189)
T 2i3b_A 69 PP--------------GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEI------GKM--ELFSQ---- 122 (189)
T ss_dssp CS--------------SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCC------STT--TTTCS----
T ss_pred Cc--------------cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCC------Ccc--ccccH----
Confidence 00 000 012233445799999998 5555 68999999955553 023 22221
Q ss_pred hhHHHHHHHHhcCCCcccccCCceEEE--Ee--chhHHccccEEEEEeeCCEEeeeC
Q 015952 250 EKQYNQIVATTFNCPYLSFRDDKPVVV--VT--HGDLLSLTDRARIRTYLGELLGIP 302 (397)
Q Consensus 250 ~~~~~~~i~~l~~~~~~~~~~g~TVIi--vT--H~~~~~~aDrI~v~l~~G~iv~~g 302 (397)
..++.+.+++ +...++|+ +| |+....++||| ..+.+|+|+...
T Consensus 123 --~~~~~l~~~l-------~~~~~~ilgti~vsh~~~~~~vd~i-~~~~~~~i~~~~ 169 (189)
T 2i3b_A 123 --LFIQAVRQTL-------STPGTIILGTIPVPKGKPLALVEEI-RNRKDVKVFNVT 169 (189)
T ss_dssp --HHHHHHHHHH-------HCSSCCEEEECCCCCSSCCTTHHHH-HTTCCSEEEECC
T ss_pred --HHHHHHHHHH-------hCCCcEEEEEeecCCCCchHHHHHH-eecCCcEEEEeC
Confidence 2456666654 23445554 34 96336788999 458899998753
No 100
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.66 E-value=2.2e-16 Score=173.63 Aligned_cols=129 Identities=16% Similarity=0.154 Sum_probs=96.8
Q ss_pred CccHHHHHhcCCC---Ch----------hhHHHHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcCCC--CeEe
Q 015952 163 SFSLYDTRSLSDD---AS----------DNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEP--SVIR 225 (397)
Q Consensus 163 ~ltv~eni~~~~~---~~----------~~~~~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P--~iLl 225 (397)
.+||.|++.|... +. +++.+++ +.|..+||++ ..+.+.+|||||+|||+||++|+.+| ++|
T Consensus 451 ~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ll- 528 (972)
T 2r6f_A 451 AMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLY- 528 (972)
T ss_dssp TSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEE-
T ss_pred hCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEE-
Confidence 4688888888432 11 2344455 4689999964 46678899999999999999999985 899
Q ss_pred eccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCEE
Q 015952 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGEL 298 (397)
Q Consensus 226 lDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~i 298 (397)
|||||| ++||+.... ...+.+.++ .+.|.|||+|+|+ +....|||| ++| ++|++
T Consensus 529 -------ILDEPT--agLdp~~~~--~L~~~L~~L-------r~~G~TVIvVeHdl~~i~~ADrI-i~LgpgaG~~gG~i 589 (972)
T 2r6f_A 529 -------VLDEPS--IGLHQRDND--RLIATLKSM-------RDLGNTLIVVEHDEDTMLAADYL-IDIGPGAGIHGGEV 589 (972)
T ss_dssp -------EEECTT--TTCCGGGHH--HHHHHHHHH-------HTTTCEEEEECCCHHHHHSCSEE-EEECSSSGGGCCSE
T ss_pred -------EEeCcc--cCCCHHHHH--HHHHHHHHH-------HhCCCEEEEEecCHHHHHhCCEE-EEeCCCccCCCCEE
Confidence 666667 788865433 344555444 2579999999996 556789999 568 79999
Q ss_pred eeeCCcccccCCCC
Q 015952 299 LGIPPAKQIFDIPE 312 (397)
Q Consensus 299 v~~g~~~el~~~~~ 312 (397)
++.|++++++..+.
T Consensus 590 v~~G~~~e~~~~~~ 603 (972)
T 2r6f_A 590 VAAGTPEEVMNDPN 603 (972)
T ss_dssp EEEECTTTTTTCTT
T ss_pred EEecCHHHHHhhhH
Confidence 99999999887543
No 101
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.65 E-value=7.1e-18 Score=186.02 Aligned_cols=139 Identities=15% Similarity=0.177 Sum_probs=85.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc-ccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHh
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 171 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~-~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~ 171 (397)
++|+||++++|++++|+||||||||||||+|+++.. .. .| .++|+.... +.+.+.
T Consensus 663 ~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~-----~aq~g-----------~~vpa~~~~------i~~~d~-- 718 (918)
T 3thx_B 663 PNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITI-----MAQIG-----------SYVPAEEAT------IGIVDG-- 718 (918)
T ss_dssp CEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHH-----HHHHT-----------CCBSSSEEE------EECCSE--
T ss_pred cccccccCCCCeEEEEECCCCCchHHHHHHHHHHHH-----HhhcC-----------ccccchhhh------hhHHHH--
Confidence 899999999999999999999999999999987543 11 11 112211100 000000
Q ss_pred cCCCChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhh
Q 015952 172 LSDDASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (397)
Q Consensus 172 ~~~~~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~ 250 (397)
++.++++ +........+|+||+|++.|+++ +.+|+++ +||||| +++|+....
T Consensus 719 ---------------i~~~ig~~d~l~~~~stfs~em~~~~~il~~-a~~p~Ll--------LLDEP~--~GlD~~~~~- 771 (918)
T 3thx_B 719 ---------------IFTRMGAADNIYKGRSTFMEELTDTAEIIRK-ATSQSLV--------ILDELG--RGTSTHDGI- 771 (918)
T ss_dssp ---------------EEEEC----------CCHHHHHHHHHHHHHH-CCTTCEE--------EEESTT--TTSCHHHHH-
T ss_pred ---------------HHHhCChHHHHHHhHHHhhHHHHHHHHHHHh-ccCCCEE--------EEeCCC--CCCCHHHHH-
Confidence 1112222 11223356679999999999999 8999999 555556 777754433
Q ss_pred hHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccE
Q 015952 251 KQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDR 288 (397)
Q Consensus 251 ~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDr 288 (397)
.....+.+. +..+.|.|+|++||+ ++..+||+
T Consensus 772 -~i~~~il~~-----L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 772 -AIAYATLEY-----FIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp -HHHHHHHHH-----HHHTTCCEEEEECSCGGGGGHHHH
T ss_pred -HHHHHHHHH-----HHHhcCCeEEEEeCcHHHHHHHhh
Confidence 222122221 112368999999995 66666665
No 102
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.64 E-value=1.1e-17 Score=166.29 Aligned_cols=171 Identities=9% Similarity=0.001 Sum_probs=102.3
Q ss_pred ceee-eEEEcCCcEEEEECCCCCcHHHHHHHHHccc--CCCCCCCcc----cE-EEECcee----CcEEEEecCCCCCCC
Q 015952 93 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVNRISKVF--ENDKFASER----AQ-VTYNSSV----GDGTYFLQEYTIPRG 160 (397)
Q Consensus 93 L~~i-sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~--~~~~~~p~~----G~-I~i~G~~----~~ig~v~Q~~~l~~~ 160 (397)
|+.+ ++.|++|++++|+||||||||||++.++++. + |++ |. |++++.. .++++++|.+.++.
T Consensus 120 LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~-----~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~- 193 (349)
T 1pzn_A 120 LDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLP-----PEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDP- 193 (349)
T ss_dssp HHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSC-----GGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCH-
T ss_pred HHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccc-----hhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCH-
Confidence 6665 6899999999999999999999999999998 5 776 67 8888763 45677777766543
Q ss_pred CCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHc-------CCCCeEeeccccccc
Q 015952 161 SNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-------CEPSVIRKVNFVIFV 233 (397)
Q Consensus 161 ~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~-------~~P~iLllDEP~~si 233 (397)
.++.+|+.+.... .|.+|+|++.++++++ .+|++|++||| ++.
T Consensus 194 ---~~v~~ni~~~~~~--------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~-ta~ 243 (349)
T 1pzn_A 194 ---DEVLKHIYVARAF--------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSL-TSH 243 (349)
T ss_dssp ---HHHGGGEEEEECC--------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETS-STT
T ss_pred ---HHHhhCEEEEecC--------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCc-hHh
Confidence 2666666543210 1567888888888888 78999955555 334
Q ss_pred cchhhhhccccccchh---hhHHHHHHHHhcCCCcccccCCceEEEEech--hHHccccEEEEEeeCCEEeeeCCccccc
Q 015952 234 VDGLAVLKSMEGDSDV---EKQYNQIVATTFNCPYLSFRDDKPVVVVTHG--DLLSLTDRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 234 LDEpT~~s~LD~~~~~---~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~--~~~~~aDrI~v~l~~G~iv~~g~~~el~ 308 (397)
+|... .+-....+. ....+..+.++ ..+.|+|||+++|. .....++.. +....|++++.+....++
T Consensus 244 ld~~~--~~~~~~~~r~~~~~~~l~~L~~l------a~~~~~tvii~~h~~~~~~~~~~~~-~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 244 FRSEY--IGRGALAERQQKLAKHLADLHRL------ANLYDIAVFVTNQVQARPDAFFGDP-TRPIGGHILAHSATLRVY 314 (349)
T ss_dssp HHHHC--CSTTTHHHHHHHHHHHHHHHHHH------HHHTTCEEEEEEECC----------------CCCCCTTCSEEEE
T ss_pred hhhhh--cccccHHHHHHHHHHHHHHHHHH------HHHcCcEEEEEcccccccccccCCc-cccCCcceEeecCcEEEE
Confidence 43321 000000000 11122222222 12368999999993 332233334 347778887777655554
No 103
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.64 E-value=2.7e-18 Score=182.49 Aligned_cols=189 Identities=16% Similarity=0.124 Sum_probs=102.9
Q ss_pred CeEEEEeEEEEECCCceEeeccCceee----------eEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCC-cccE
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLS----------DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS-ERAQ 138 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~i----------sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p-~~G~ 138 (397)
+.++++|+++.|+.... .. |+.+ +++++. ++|+||||||||||+++|+|++. | ++|.
T Consensus 9 ~~i~~~~l~~~~~~~~r-~l---l~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~-----P~~sG~ 76 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVR-PC---IDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL-----PRGSGI 76 (608)
T ss_dssp -----------CHHHHH-HH---HHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC------------
T ss_pred chhhhhhhhHHHHHHHH-HH---HHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC-----CCCCCe
Confidence 46889999999953210 11 3333 466664 99999999999999999999998 8 7999
Q ss_pred EEECcee-------------CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCCh
Q 015952 139 VTYNSSV-------------GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSS 205 (397)
Q Consensus 139 I~i~G~~-------------~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSG 205 (397)
|+++|.. ..+||+||++.+++ .++|.+|+.+.. ..+...+. ..|
T Consensus 77 vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~---~~tv~e~i~~~~-----------~~~~~~~~--------~~s- 133 (608)
T 3szr_A 77 VTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISD---ASEVEKEINKAQ-----------NAIAGEGM--------GIS- 133 (608)
T ss_dssp CCCSCEEEEEEECSSSSCCEEEESCC---CCCCC---HHHHHTTHHHHH-----------HHHHCSSS--------CCC-
T ss_pred EEEcCEEEEEecCCccccceeEEeeecccccCCC---HHHHHHHHHHHH-----------HHhcCCcc--------ccc-
Confidence 9999862 46899999988876 679999886531 11111110 011
Q ss_pred HHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-----
Q 015952 206 LRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG----- 280 (397)
Q Consensus 206 GqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~----- 280 (397)
++++.++.+....|+++++||| .+..-|| +++|..... ...+.+.+++ ....+.+++++||+
T Consensus 134 --~~~i~l~i~~~~~p~LlLlDeP--Gi~~~~t--~~LD~~~~~--~i~~li~~~l-----~~~~~iil~vvt~~~d~a~ 200 (608)
T 3szr_A 134 --HELITLEISSRDVPDLTLIDLP--GITRVAV--GNQPADIGY--KIKTLIKKYI-----QRQETISLVVVPSNVDIAT 200 (608)
T ss_dssp --SCCEEEEEEESSSCCEEEEECC--C--------CCSSCSHHH--HHHHHHHHHT-----TSSSCCEEEEEESSSCTTT
T ss_pred --hHHHHHHhcCCCCCceeEeeCC--Ccccccc--CCCCHHHHH--HHHHHHHHHH-----hcCCCCceEEEeccchhcc
Confidence 1333444455668999966666 2233337 888876543 3445555542 23467888999993
Q ss_pred -hHHcc--------ccEEEEEeeCCEEeeeCCcccc
Q 015952 281 -DLLSL--------TDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 281 -~~~~~--------aDrI~v~l~~G~iv~~g~~~el 307 (397)
.+.++ ...| +++.++.++..|+.+++
T Consensus 201 ~~~l~la~~v~~~g~rtI-~VlTK~Dlv~~g~~~~~ 235 (608)
T 3szr_A 201 TEALSMAQEVDPEGDRTI-GILTKPDLVDKGTEDKV 235 (608)
T ss_dssp CHHHHHHHHHCSSCCSEE-EEEECGGGSSSSSTTCC
T ss_pred HHHHHHHHHHhhcCCceE-EEecchhhcCcccHHHH
Confidence 11222 2334 56888888888876544
No 104
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.64 E-value=6.8e-18 Score=152.97 Aligned_cols=168 Identities=8% Similarity=-0.047 Sum_probs=86.6
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce---eCc
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---VGD 147 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---~~~ 147 (397)
+|+++|++|.|+ ..+ +++ |.+++|..++|+|+||||||||+|.|+|........|+.|.+.+.+. ...
T Consensus 3 ~l~~~~~~~~~~--~~~-----l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~ 73 (210)
T 1pui_A 3 NLNYQQTHFVMS--APD-----IRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADG 73 (210)
T ss_dssp --------CEEE--ESS-----GGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETT
T ss_pred chhhhhhhheee--cCC-----HhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCC
Confidence 689999999995 223 777 89999999999999999999999999998810001188888765332 011
Q ss_pred EEEEecCCCCCCCC--CC----c--cHHHHHh---cC--------CC-ChhhHHHHHHHHHHHCCCcc--cccCCCCCCh
Q 015952 148 GTYFLQEYTIPRGS--NS----F--SLYDTRS---LS--------DD-ASDNINMIKLWIMEGVRHGE--LVIRRSDSSS 205 (397)
Q Consensus 148 ig~v~Q~~~l~~~~--~~----l--tv~eni~---~~--------~~-~~~~~~~~~~~ll~~vgl~~--~~~~~~~lSG 205 (397)
+-++ .-+...... .. + .+...+. .. .. ........+.+++...++.. ...+...+|+
T Consensus 74 ~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 74 KRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS 152 (210)
T ss_dssp EEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH
T ss_pred EEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc
Confidence 1111 111110000 00 0 0001000 00 00 11122233445666777743 2455666799
Q ss_pred HHHHH-HHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHh
Q 015952 206 LRNRM-RCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 260 (397)
Q Consensus 206 GqkQR-vaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l 260 (397)
||+|| +..|++++.+|.++ ++|||| |++|...-. ...+.+.+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~--------~~~~~~--Sal~~~~~~--~l~~~l~~~ 196 (210)
T 1pui_A 153 GARKAQLNMVREAVLAFNGD--------VQVETF--SSLKKQGVD--KLRQKLDTW 196 (210)
T ss_dssp HHHHHHHHHHHHHHGGGCSC--------EEEEEC--BTTTTBSHH--HHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCC--------CceEEE--eecCCCCHH--HHHHHHHHH
Confidence 99999 89999999999988 556666 788865443 344444443
No 105
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.64 E-value=9.7e-18 Score=170.72 Aligned_cols=135 Identities=12% Similarity=0.073 Sum_probs=76.6
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc--EEEECce---
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSS--- 144 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G--~I~i~G~--- 144 (397)
.+++++||+++|+. ..+ ++++||+| +|+||||||||||+|+|+|+.. +..| .+.+++.
T Consensus 10 ~~l~~~~l~~~y~~-~~v-----l~~vsf~I------~lvG~sGaGKSTLln~L~g~~~-----~~~~~~~~~~~~~~t~ 72 (418)
T 2qag_C 10 GYVGFANLPNQVYR-KSV-----KRGFEFTL------MVVGESGLGKSTLINSLFLTDL-----YSPEYPGPSHRIKKTV 72 (418)
T ss_dssp -----CCCCCCTTT-TTC-----C-CCCEEE------EEECCTTSSHHHHHHHHTTCCC-----CCCCCCSCC-----CC
T ss_pred CcEEEEecceeECC-EEE-----ecCCCEEE------EEECCCCCcHHHHHHHHhCCCC-----CCCCCCCcccCCccce
Confidence 47999999999964 324 99999998 9999999999999999999987 4333 2222211
Q ss_pred -eCcEEEEecCCCCCCCCCCccHHHHHhcCCCCh-hhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCC
Q 015952 145 -VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDAS-DNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS 222 (397)
Q Consensus 145 -~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~-~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~ 222 (397)
...+++++|+..++. .+|++||+.++.... ......+.+.++ ..++.+++||++||||++.+|+
T Consensus 73 ~~~~i~~v~q~~~~~~---~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~-----------~~~~~~l~qr~~IaRal~~d~~ 138 (418)
T 2qag_C 73 QVEQSKVLIKEGGVQL---LLTIVDTPGFGDAVDNSNCWQPVIDYID-----------SKFEDYLNAESRVNRRQMPDNR 138 (418)
T ss_dssp EEEEEECC------CE---EEEEEECC-----------CHHHHHHHH-----------HHHHHHTTTSCC-CCCCCCCC-
T ss_pred eeeeEEEEEecCCccc---ceeeeechhhhhhccchhhHHHHHHHHH-----------HHHHHHHHHHHHHHHHhccCCC
Confidence 245789999877664 689999998875411 110011111111 1235577889999999999999
Q ss_pred ---eEeeccccccccchhhhhcccc
Q 015952 223 ---VIRKVNFVIFVVDGLAVLKSME 244 (397)
Q Consensus 223 ---iLllDEP~~siLDEpT~~s~LD 244 (397)
+| ++||||. .++|
T Consensus 139 ~~vlL--------~ldePt~-~~L~ 154 (418)
T 2qag_C 139 VQCCL--------YFIAPSG-HGLK 154 (418)
T ss_dssp CCEEE--------EECCC-C-CSCC
T ss_pred eeEEE--------EEecCcc-cCCC
Confidence 89 5566662 3555
No 106
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.63 E-value=6.9e-17 Score=147.88 Aligned_cols=163 Identities=12% Similarity=0.065 Sum_probs=95.5
Q ss_pred ceeeeE-EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHH-
Q 015952 93 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTR- 170 (397)
Q Consensus 93 L~~isl-~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni- 170 (397)
|+++.. .+++|++++|+||||||||||++.|++... +..|.|.+.+. +.. . ..+.+.+
T Consensus 12 Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~-----~~~~~v~~~~~---------~~~--~----~~~~~~~~ 71 (235)
T 2w0m_A 12 FDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL-----RDGDPCIYVTT---------EES--R----DSIIRQAK 71 (235)
T ss_dssp HHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH-----HHTCCEEEEES---------SSC--H----HHHHHHHH
T ss_pred HHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH-----HCCCeEEEEEc---------ccC--H----HHHHHHHH
Confidence 888887 899999999999999999999999999988 87787776442 100 0 0111111
Q ss_pred hcCCCChhhHHH---HHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCC--eEeeccccccccchhhhhccc--
Q 015952 171 SLSDDASDNINM---IKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPS--VIRKVNFVIFVVDGLAVLKSM-- 243 (397)
Q Consensus 171 ~~~~~~~~~~~~---~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~--iLllDEP~~siLDEpT~~s~L-- 243 (397)
.++......... .++.....++- . ......|.++.++...+.+...+|+ ++ ++|||| +.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll--------ilDe~~--~~~~~ 138 (235)
T 2w0m_A 72 QFNWDFEEYIEKKLIIIDALMKEKED-Q--WSLVNLTPEELVNKVIEAKQKLGYGKARL--------VIDSVS--ALFLD 138 (235)
T ss_dssp HTTCCCGGGBTTTEEEEECCC----C-T--TBCSSCCHHHHHHHHHHHHHHHCSSCEEE--------EEETGG--GGSSS
T ss_pred HhcchHHHHhhCCEEEEeccccccCc-e--eeecCCCHHHHHHHHHHHHHhhCCCceEE--------EEECch--HhhcC
Confidence 011000000000 00000000000 0 0012239999999988888888999 99 555555 333
Q ss_pred cccchhhhHHHHHHHHhcCCCcccccCCceEEEEechh----------HHccccEEEEEeeCCE
Q 015952 244 EGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHGD----------LLSLTDRARIRTYLGE 297 (397)
Q Consensus 244 D~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~~----------~~~~aDrI~v~l~~G~ 297 (397)
|+.. ....++.+.++. .+.|.|||++||+. +..+||+| ++|+..+
T Consensus 139 d~~~--~~~~~~~l~~~~------~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~v-i~l~~~~ 193 (235)
T 2w0m_A 139 KPAM--ARKISYYLKRVL------NKWNFTIYATSQYAITTSQAFGFGVEHVADGI-IRFRRMI 193 (235)
T ss_dssp CGGG--HHHHHHHHHHHH------HHTTEEEEEEEC-----------CHHHHCSEE-EEEEEEE
T ss_pred CHHH--HHHHHHHHHHHH------HhCCCeEEEEeccCcccccccccchheeeeEE-EEEEEEe
Confidence 4221 123344444331 24689999999953 78899999 5687643
No 107
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.62 E-value=5.7e-17 Score=161.82 Aligned_cols=140 Identities=13% Similarity=0.134 Sum_probs=87.5
Q ss_pred EeEEEEECCCceEeeccCceeeeE-------EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc-ccEEEECcee-
Q 015952 75 KNKILSYTPGAWIENVGGMTLSDY-------DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSV- 145 (397)
Q Consensus 75 ~nvs~~Y~~~~~v~~~~~L~~isl-------~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~-~G~I~i~G~~- 145 (397)
.+++++|.... ... |+++.+ .+.+|++++|+||||||||||+++|+|+++ |+ .|.|...+..
T Consensus 92 ~~~~iR~~~~~-~~~---l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~-----~~~~~~i~t~ed~~ 162 (356)
T 3jvv_A 92 AGAVFRTIPSK-VLT---MEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN-----NTKYHHILTIEDPI 162 (356)
T ss_dssp EEEEEEEECCS-CCC---TTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH-----HHCCCEEEEEESSC
T ss_pred cEEEEEECCCC-CCC---HHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc-----CCCCcEEEEccCcH
Confidence 46677763322 112 666666 678899999999999999999999999999 87 4666432211
Q ss_pred -----CcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCC
Q 015952 146 -----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCE 220 (397)
Q Consensus 146 -----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~ 220 (397)
...++++|..... ..++-.+ +|||||..+
T Consensus 163 e~~~~~~~~~v~q~~~~~------------------------------------------~~~~~~~----~La~aL~~~ 196 (356)
T 3jvv_A 163 EFVHESKKCLVNQREVHR------------------------------------------DTLGFSE----ALRSALRED 196 (356)
T ss_dssp CSCCCCSSSEEEEEEBTT------------------------------------------TBSCHHH----HHHHHTTSC
T ss_pred Hhhhhccccceeeeeecc------------------------------------------ccCCHHH----HHHHHhhhC
Confidence 0111121111000 0011111 999999999
Q ss_pred CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCC
Q 015952 221 PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLG 296 (397)
Q Consensus 221 P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G 296 (397)
|++|++||| | | ....+.+.+. ...|+||+++||+ .+...|||+ +.|..|
T Consensus 197 PdvillDEp--------~-----d------~e~~~~~~~~-------~~~G~~vl~t~H~~~~~~~~dRl-i~l~~~ 246 (356)
T 3jvv_A 197 PDIILVGEM--------R-----D------LETIRLALTA-------AETGHLVFGTLHTTSAAKTIDRV-VDVFPA 246 (356)
T ss_dssp CSEEEESCC--------C-----S------HHHHHHHHHH-------HHTTCEEEEEESCSSHHHHHHHH-HHTSCH
T ss_pred cCEEecCCC--------C-----C------HHHHHHHHHH-------HhcCCEEEEEEccChHHHHHHHH-hhhcCc
Confidence 999966666 3 1 1122333322 2469999999994 555889999 456543
No 108
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.61 E-value=6e-16 Score=170.76 Aligned_cols=128 Identities=14% Similarity=0.124 Sum_probs=95.5
Q ss_pred CccHHHHHhcCCC---Ch----------hhHHHHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcCC--CCeEe
Q 015952 163 SFSLYDTRSLSDD---AS----------DNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCE--PSVIR 225 (397)
Q Consensus 163 ~ltv~eni~~~~~---~~----------~~~~~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~--P~iLl 225 (397)
.+||.|++.|... +. +++.+++ +.+..+||++ ..+...+|||||+|||+||+||+.+ |++|
T Consensus 468 ~ltV~e~l~f~enl~l~~~~~~i~~~i~~ei~~Rl-~~L~~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~~~~ll- 545 (993)
T 2ygr_A 468 ELSIADCADFLNALTLGPREQAIAGQVLKEIRSRL-GFLLDVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGLVGVLY- 545 (993)
T ss_dssp HHHHHHHHHTTTTTTSCHHHHHHHHHHHHHHHHHH-HHHHHHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCCCSCEE-
T ss_pred hCCHHHHHHHHHhcCCCHHHhHHHHHHHHHHHHHH-HHHhhCCCCccccCCCcccCCHHHHHHHHHHHHHhhCCCCcEE-
Confidence 5799999988543 11 2334454 4588999964 4667889999999999999999999 5899
Q ss_pred eccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCEE
Q 015952 226 KVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGEL 298 (397)
Q Consensus 226 lDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~i 298 (397)
|||||| ++||+.... ...+.+.++ .+.|.|||+|+|+ +....|||| ++| ++|++
T Consensus 546 -------ILDEPT--agLdp~~~~--~L~~~L~~L-------r~~G~TVIvVeHdl~~i~~ADrI-i~Lgp~aG~~gG~i 606 (993)
T 2ygr_A 546 -------VLDEPS--IGLHQRDNR--RLIETLTRL-------RDLGNTLIVVEHDEDTIEHADWI-VDIGPGAGEHGGRI 606 (993)
T ss_dssp -------EEECTT--TTCCHHHHH--HHHHHHHHH-------HHTTCEEEEECCCHHHHHTCSEE-EEECSSSGGGCCSC
T ss_pred -------EEeCcc--cCCCHHHHH--HHHHHHHHH-------HHcCCEEEEECCCHHHHHhCCEE-EEecCccccCCCEE
Confidence 666667 777754322 334444443 2479999999996 556789999 569 79999
Q ss_pred eeeCCcccccCCC
Q 015952 299 LGIPPAKQIFDIP 311 (397)
Q Consensus 299 v~~g~~~el~~~~ 311 (397)
++.|+++++...+
T Consensus 607 v~~G~~~e~~~~~ 619 (993)
T 2ygr_A 607 VHSGPYDELLRNK 619 (993)
T ss_dssp CEEECHHHHHHCT
T ss_pred EEeeCHHHhhhhh
Confidence 9999999987654
No 109
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.60 E-value=1.2e-18 Score=173.77 Aligned_cols=182 Identities=13% Similarity=0.085 Sum_probs=102.9
Q ss_pred ceeeeEEEcC--CcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcc----cEEEECceeCcEEEEecCCCCCCCCCCccH
Q 015952 93 MTLSDYDVPK--TTSLLLIGPKGSGKSSLVNRISKVFENDKFASER----AQVTYNSSVGDGTYFLQEYTIPRGSNSFSL 166 (397)
Q Consensus 93 L~~isl~I~~--Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~----G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv 166 (397)
.+.|+++|++ |+.++|+||||||||||+|+|+|+++ |++ |++.+++.... ++..+.. ...
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~-----~~~~~e~G~i~i~~~~~~-----~~~~~~~----~~~ 223 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN-----TTSAWEYGREFVFEKLGG-----DEQAMQY----SDY 223 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT-----CEEECCTTHHHHHHSSSS-----CTTSSCT----TTH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC-----CCcchhhHHHHHHhhcCC-----CcccCCh----hHH
Confidence 5679999999 99999999999999999999999999 998 88776431000 0000100 112
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHCCC---cccccCCCCCChHHHHHHHHHHHH-cCCCCeEeecc---ccccc-cchhh
Q 015952 167 YDTRSLSDDASDNINMIKLWIMEGVRH---GELVIRRSDSSSLRNRMRCKAHKI-GCEPSVIRKVN---FVIFV-VDGLA 238 (397)
Q Consensus 167 ~eni~~~~~~~~~~~~~~~~ll~~vgl---~~~~~~~~~lSGGqkQRvaIArAL-~~~P~iLllDE---P~~si-LDEpT 238 (397)
+++.+... ..........+.+-+ ......+..+|+|++||..+++++ ..+|+++++|| | . -|.++
T Consensus 224 -~~I~~~~q---~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p---~~~~g~~ 296 (365)
T 1lw7_A 224 -PQMALGHQ---RYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTE---WVDDGLR 296 (365)
T ss_dssp -HHHHHHHH---HHHHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC----------
T ss_pred -HHHHHHHH---HHHHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCC---cccCCCc
Confidence 33333210 000000000010000 001112223467778888888887 47999998888 4 2 22233
Q ss_pred hhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec-hhHHccccEEEEEeeCCEEeeeCCccccc
Q 015952 239 VLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLTDRARIRTYLGELLGIPPAKQIF 308 (397)
Q Consensus 239 ~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH-~~~~~~aDrI~v~l~~G~iv~~g~~~el~ 308 (397)
.++|..... ...+.+.++. .+.|.+||+++| +.+.++++++. .+++ ++..++++++.
T Consensus 297 --~sld~~~r~--~l~~~l~~l~------~~~~~~ililde~~~~~r~~~~i~-~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 297 --SLGSQKQRQ--QFQQLLKKLL------DKYKVPYIEIESPSYLDRYNQVKA-VIEK--VLNEEEISELQ 354 (365)
T ss_dssp ------CCSHH--HHHHHHHHHH------HGGGCCCEEEECSSHHHHHHHHHH-HHHH--HTSCCCCSSCC
T ss_pred --CCccHHHHH--HHHHHHHHHH------HHcCCCEEEeCCCCHHHHHHHHHH-HHHH--HhcccchhHhh
Confidence 456655443 3344443332 234789999999 58888889884 4554 55566666653
No 110
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.59 E-value=1.3e-16 Score=174.22 Aligned_cols=154 Identities=12% Similarity=0.056 Sum_probs=93.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
++|+||+ ++|++++|+||||||||||+|+|+|+... ...|.. +-.....+++++| ++. .+++.||+..
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~----~q~G~~-vpa~~~~i~~~~~---i~~---~~~~~d~l~~ 665 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM----AYIGSY-VPAQKVEIGPIDR---IFT---RVGAADDLAS 665 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH----HTTTCC-BSSSEEEECCCCE---EEE---EEC-------
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH----HhcCcc-cchhcccceeHHH---HHh---hCCHHHHHHh
Confidence 9999999 99999999999999999999999998540 122211 1111223455544 222 2455554422
Q ss_pred CCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhH
Q 015952 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQ 252 (397)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~ 252 (397)
+ ...+|++|++ ++.+..++.+|+++ +||||+ +++|+......
T Consensus 666 ~--------------------------~stf~~e~~~-~~~il~~a~~psLl--------LLDEp~--~Gtd~~d~~~i- 707 (800)
T 1wb9_A 666 G--------------------------RSTFMVEMTE-TANILHNATEYSLV--------LMDEIG--RGTSTYDGLSL- 707 (800)
T ss_dssp ------------------------------CHHHHHH-HHHHHHHCCTTEEE--------EEESCC--CCSSSSHHHHH-
T ss_pred h--------------------------hhhhhHHHHH-HHHHHHhccCCCEE--------EEECCC--CCCChhHHHHH-
Confidence 1 1234666654 44555679999999 555555 77775543311
Q ss_pred HHHHHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEeeCCEEeeeCC
Q 015952 253 YNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRTYLGELLGIPP 303 (397)
Q Consensus 253 ~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l~~G~iv~~g~ 303 (397)
....+..+. .+.|.++|++||+ ++..+||++ ..+.+|++..+..
T Consensus 708 ~~~ll~~l~------~~~g~~vl~~TH~~el~~l~d~~-~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 708 AWACAENLA------NKIKALTLFATHYFELTQLPEKM-EGVANVHLDALEH 752 (800)
T ss_dssp HHHHHHHHH------HTTCCEEEEECSCGGGGGHHHHS-TTEEEEEEEEEEE
T ss_pred HHHHHHHHH------hccCCeEEEEeCCHHHHHHhhhh-hceEEEEEEEEEc
Confidence 123333321 1258999999995 666789987 4578888765543
No 111
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.59 E-value=1.1e-14 Score=147.90 Aligned_cols=73 Identities=10% Similarity=0.061 Sum_probs=52.2
Q ss_pred CCChHHHHHHHHHHHHc----CCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEE
Q 015952 202 DSSSLRNRMRCKAHKIG----CEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVV 277 (397)
Q Consensus 202 ~lSGGqkQRvaIArAL~----~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIiv 277 (397)
.+|||||||++||++|+ .+|+++|| |||+ ++||+.... ...+.+.++ ...+.++|++
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lll--------DEp~--~~LD~~~~~--~l~~~l~~~-------~~~~~~~ii~ 393 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVL--------DEVD--AALDITNVQ--RIAAYIRRH-------RNPDLQFIVI 393 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEE--------SSTT--TTCCHHHHH--HHHHHHHHH-------CBTTBEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEe--------CCCc--ccCCHHHHH--HHHHHHHHH-------hcCCCEEEEE
Confidence 47999999999999999 68999955 5555 666644332 233444332 1347899999
Q ss_pred ech-hHHccccEEEEEee
Q 015952 278 THG-DLLSLTDRARIRTY 294 (397)
Q Consensus 278 TH~-~~~~~aDrI~v~l~ 294 (397)
||+ .....||+++ .+.
T Consensus 394 th~~~~~~~~d~~~-~~~ 410 (430)
T 1w1w_A 394 SLKNTMFEKSDALV-GVY 410 (430)
T ss_dssp CSCHHHHTTCSEEE-EEE
T ss_pred ECCHHHHHhCCEEE-EEE
Confidence 995 6778899995 454
No 112
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.58 E-value=4e-15 Score=162.74 Aligned_cols=112 Identities=17% Similarity=0.127 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHHHHcCCCC--eEeeccccccccchhhhhccccccchhhhHHHH
Q 015952 180 INMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAHKIGCEPS--VIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQ 255 (397)
Q Consensus 180 ~~~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIArAL~~~P~--iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~ 255 (397)
+..++. .+..+|+++ ......+|||||+|||+||+||+.+|+ +| +||||| ++||+.... ...+
T Consensus 356 i~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~ll--------ILDEPT--~~Ld~~~~~--~L~~ 422 (842)
T 2vf7_A 356 LVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVY--------VLDEPS--AGLHPADTE--ALLS 422 (842)
T ss_dssp HHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEE--------EEECTT--TTCCGGGHH--HHHH
T ss_pred HHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEE--------EeeCcc--ccCCHHHHH--HHHH
Confidence 334444 688999965 366788999999999999999999994 99 666667 788755433 3444
Q ss_pred HHHHhcCCCcccccCCceEEEEech-hHHccccEEEEEe------eCCEEeeeCCcccccCCCC
Q 015952 256 IVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRARIRT------YLGELLGIPPAKQIFDIPE 312 (397)
Q Consensus 256 ~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI~v~l------~~G~iv~~g~~~el~~~~~ 312 (397)
.+.++ .+.|.|||+|+|+ ++...||+| ++| ++|+++..|+++++...+.
T Consensus 423 ~l~~L-------~~~G~TVIvVeHdl~~l~~aD~i-i~lgpgaG~~~G~iv~~g~~~~~~~~~~ 478 (842)
T 2vf7_A 423 ALENL-------KRGGNSLFVVEHDLDVIRRADWL-VDVGPEAGEKGGEILYSGPPEGLKHVPE 478 (842)
T ss_dssp HHHHH-------HTTTCEEEEECCCHHHHTTCSEE-EEECSSSGGGCCSEEEEECGGGGGGCTT
T ss_pred HHHHH-------HHcCCEEEEEcCCHHHHHhCCEE-EEeCCCcccCCCEEEEecCHHHHHhchH
Confidence 44444 2469999999996 667789999 569 7999999999999887543
No 113
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.55 E-value=5.5e-15 Score=129.96 Aligned_cols=81 Identities=17% Similarity=0.108 Sum_probs=58.2
Q ss_pred ccCCCCCChHHHHHHHHH------HHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccC
Q 015952 197 VIRRSDSSSLRNRMRCKA------HKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRD 270 (397)
Q Consensus 197 ~~~~~~lSGGqkQRvaIA------rAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~ 270 (397)
..++.+||||||||++|| |||+.+|+++++ |||| ++||..... ...+.+.++ .+.
T Consensus 52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllL--------DEPt--~~LD~~~~~--~l~~~l~~~-------~~~ 112 (148)
T 1f2t_B 52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLIL--------DEPT--PYLDEERRR--KLITIMERY-------LKK 112 (148)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEE--------ESCS--CTTCHHHHH--HHHHHHHHT-------GGG
T ss_pred cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEE--------ECCC--ccCCHHHHH--HHHHHHHHH-------Hcc
Confidence 355788999999999876 999999999955 5555 666644332 233444332 135
Q ss_pred CceEEEEech-hHHccccEEEEEe--eCCE
Q 015952 271 DKPVVVVTHG-DLLSLTDRARIRT--YLGE 297 (397)
Q Consensus 271 g~TVIivTH~-~~~~~aDrI~v~l--~~G~ 297 (397)
|+|||++||+ ++..+||++ ++| ++|.
T Consensus 113 ~~tiiivsH~~~~~~~~d~i-i~l~~~~g~ 141 (148)
T 1f2t_B 113 IPQVILVSHDEELKDAADHV-IRISLENGS 141 (148)
T ss_dssp SSEEEEEESCGGGGGGCSEE-EEEEEETTE
T ss_pred CCEEEEEEChHHHHHhCCEE-EEEEcCCCe
Confidence 8899999996 778899999 568 4554
No 114
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.54 E-value=1.1e-14 Score=139.34 Aligned_cols=148 Identities=14% Similarity=0.080 Sum_probs=90.5
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----eCcEEEEecCCCCCCCCCCccHHHHH-hcC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----VGDGTYFLQEYTIPRGSNSFSLYDTR-SLS 173 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----~~~ig~v~Q~~~l~~~~~~ltv~eni-~~~ 173 (397)
.+++|++++|+||||||||||++.+++... .|.+. .|. ...+.|+..+.... .+...+ .++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-------~g~~~-~g~~~~~~~~v~~~~~e~~~~------~~~~r~~~~g 91 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-------GGPDL-LEVGELPTGPVIYLPAEDPPT------AIHHRLHALG 91 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH-------TCCCT-TCCCCCCCCCEEEEESSSCHH------HHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-------cCCCc-CCCccCCCccEEEEECCCCHH------HHHHHHHHHH
Confidence 478999999999999999999999998665 24442 232 23466765543211 122211 122
Q ss_pred CCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchh-hh
Q 015952 174 DDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDV-EK 251 (397)
Q Consensus 174 ~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~-~~ 251 (397)
.... .....++++.+.+.. ....+..+|+||+|++ ++++.+|+++ ++||||.+..+|..... ..
T Consensus 92 ~~~~---~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~li--------vlDe~~~~~~~d~~~~~~~~ 157 (279)
T 1nlf_A 92 AHLS---AEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLM--------VLDTLRRFHIEEENASGPMA 157 (279)
T ss_dssp TTSC---HHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEE--------EEECGGGGCCSCTTCHHHHH
T ss_pred hhcC---hhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEE--------EECCHHHhcCCCcCchHHHH
Confidence 1111 123455677777743 3456778899998865 6888999999 66666632255543221 12
Q ss_pred HHHHHHHHhcCCCcccccCCceEEEEech
Q 015952 252 QYNQIVATTFNCPYLSFRDDKPVVVVTHG 280 (397)
Q Consensus 252 ~~~~~i~~l~~~~~~~~~~g~TVIivTH~ 280 (397)
..++.+.++. .+.|+|||+++|+
T Consensus 158 ~~~~~L~~l~------~~~g~tvi~i~H~ 180 (279)
T 1nlf_A 158 QVIGRMEAIA------ADTGCSIVFLHHA 180 (279)
T ss_dssp HHHHHHHHHH------HHHCCEEEEEEEC
T ss_pred HHHHHHHHHH------HHcCCEEEEEecC
Confidence 2334443331 2458999999994
No 115
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.52 E-value=2.5e-16 Score=162.77 Aligned_cols=175 Identities=10% Similarity=0.045 Sum_probs=106.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------------eCcEEEEecCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------------VGDGTYFLQEYT 156 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------------~~~ig~v~Q~~~ 156 (397)
-+++||++++|++++|+||||||||||+++|+|+++ +++|+|.++|. +++++|++|++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~-----~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~ 357 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE-----QQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG 357 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh-----hcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC
Confidence 467999999999999999999999999999999999 99999999753 235899999987
Q ss_pred CCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHc-CCCCeEeeccccccccc
Q 015952 157 IPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG-CEPSVIRKVNFVIFVVD 235 (397)
Q Consensus 157 l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~-~~P~iLllDEP~~siLD 235 (397)
++. .+++++|+.++...... . -+++..|..+.. ..+-.-.+|++.++|++. ..|.-++| ++|
T Consensus 358 ~~p---~~tV~e~l~~a~~~~~D---v--VLIDTaGrl~~~---~~lm~EL~kiv~iar~l~~~~P~evLL------vLD 420 (503)
T 2yhs_A 358 ADS---ASVIFDAIQAAKARNID---V--LIADTAGRLQNK---SHLMEELKKIVRVMKKLDVEAPHEVML------TID 420 (503)
T ss_dssp CCH---HHHHHHHHHHHHHTTCS---E--EEECCCCSCCCH---HHHHHHHHHHHHHHHTTCTTCSSEEEE------EEE
T ss_pred cCH---HHHHHHHHHHHHhcCCC---E--EEEeCCCccchh---hhHHHHHHHHHHHHHHhccCCCCeeEE------Eec
Confidence 654 57999998765320000 0 012222221100 011112357889999774 45752211 566
Q ss_pred hhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec-hhHHccccEEEEEee--CCEEeeeCCcccc
Q 015952 236 GLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLTDRARIRTY--LGELLGIPPAKQI 307 (397)
Q Consensus 236 EpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH-~~~~~~aDrI~v~l~--~G~iv~~g~~~el 307 (397)
.-|+ .+ .++.+..+ ...-+.|.|++|| |...+.+..+.+ ++ ...|.+.|.-+.+
T Consensus 421 attG---q~--------al~~ak~f------~~~~~itgvIlTKLD~takgG~~lsi-~~~~~~PI~fig~Ge~v 477 (503)
T 2yhs_A 421 ASTG---QN--------AVSQAKLF------HEAVGLTGITLTKLDGTAKGGVIFSV-ADQFGIPIRYIGVGERI 477 (503)
T ss_dssp GGGT---HH--------HHHHHHHH------HHHTCCSEEEEECGGGCSCCTHHHHH-HHHHCCCEEEEECSSSG
T ss_pred Cccc---HH--------HHHHHHHH------HhhcCCCEEEEEcCCCcccccHHHHH-HHHHCCCEEEEecCCCh
Confidence 4442 11 12222221 1124789999999 654454444422 22 2345555554433
No 116
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.52 E-value=2.5e-16 Score=157.21 Aligned_cols=127 Identities=13% Similarity=0.141 Sum_probs=88.5
Q ss_pred eeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--------CcEEEEe-cCCCCCCCCCCc
Q 015952 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--------GDGTYFL-QEYTIPRGSNSF 164 (397)
Q Consensus 94 ~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--------~~ig~v~-Q~~~l~~~~~~l 164 (397)
+++||.|++|++++|+||||||||||+|+|+|+++ |++|.|.++|.+ ..++|++ |+..+
T Consensus 166 ~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~-----~~~g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~------- 233 (361)
T 2gza_A 166 SFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP-----FDQRLITIEDVPELFLPDHPNHVHLFYPSEAKE------- 233 (361)
T ss_dssp HHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC-----TTSCEEEEESSSCCCCTTCSSEEEEECC------------
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC-----CCceEEEECCccccCccccCCEEEEeecCcccc-------
Confidence 89999999999999999999999999999999999 999999998741 2233433 22110
Q ss_pred cHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcccc
Q 015952 165 SLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSME 244 (397)
Q Consensus 165 tv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD 244 (397)
.++++..+|..|+.++..+|+.+++||+ +.
T Consensus 234 -------------------------------------~~~~~~t~~~~i~~~l~~~pd~~l~~e~--------r~----- 263 (361)
T 2gza_A 234 -------------------------------------EENAPVTAATLLRSCLRMKPTRILLAEL--------RG----- 263 (361)
T ss_dssp ------------------------------------------CCHHHHHHHHTTSCCSEEEESCC--------CS-----
T ss_pred -------------------------------------ccccccCHHHHHHHHHhcCCCEEEEcCc--------hH-----
Confidence 0134456888999999999999955554 41
Q ss_pred ccchhhhHHHHHHHHhcCCCcccccCCceEEEEec-hhHHccccEEEEEeeCC
Q 015952 245 GDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDLLSLTDRARIRTYLG 296 (397)
Q Consensus 245 ~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH-~~~~~~aDrI~v~l~~G 296 (397)
. ...+.+..+- ....|++.++| +.+...+||+ +.+..|
T Consensus 264 ---~---~~~~~l~~l~-------~g~~~~l~t~H~~~~~~~~~Rl-~~l~~~ 302 (361)
T 2gza_A 264 ---G---EAYDFINVAA-------SGHGGSITSCHAGSCELTFERL-ALMVLQ 302 (361)
T ss_dssp ---T---HHHHHHHHHH-------TTCCSCEEEEECSSHHHHHHHH-HHHHTT
T ss_pred ---H---HHHHHHHHHh-------cCCCeEEEEECCCCHHHHHHHH-HHHHhc
Confidence 1 1223333221 22347889999 5788889999 446554
No 117
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.49 E-value=2.2e-15 Score=153.47 Aligned_cols=174 Identities=13% Similarity=0.152 Sum_probs=102.3
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcE--EEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcE
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDG 148 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~--vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~i 148 (397)
.+++++ +++|++ . . |+++||+|++|++ ++|+||||||||||+|+|+|+.-.. ...+...-......+
T Consensus 16 ~l~~~~-~~~y~~-~-~-----L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g---~~~~~~~~~~~~~~i 84 (427)
T 2qag_B 16 TVPLAG-HVGFDS-L-P-----DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEG---EPATHTQPGVQLQSN 84 (427)
T ss_dssp -CCCCC-CC-CC----C-----HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC----------CCSSCEEEEE
T ss_pred eEEEee-EEEECC-e-e-----cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccC---CcCCCCCccceEeeE
Confidence 467777 888842 1 2 8999999999999 9999999999999999999985311 000000001113468
Q ss_pred EEEecCCCCCCCCCCccHHHHHhcCCCChh---------hHHHHHHHHHHHC-CCcc-----cccC-----------CCC
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSLSDDASD---------NINMIKLWIMEGV-RHGE-----LVIR-----------RSD 202 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~~~~~~~---------~~~~~~~~ll~~v-gl~~-----~~~~-----------~~~ 202 (397)
+|++|++.++. .+|+.||+.++..... ........++... ++.. ...+ ...
T Consensus 85 ~~v~Q~~~l~~---~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~ 161 (427)
T 2qag_B 85 TYDLQESNVRL---KLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHS 161 (427)
T ss_dssp EEEEEC--CEE---EEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC--
T ss_pred EEEeecCcccc---ccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCC
Confidence 99999988765 6899999998764211 1233444555554 3310 0011 123
Q ss_pred CChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec
Q 015952 203 SSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH 279 (397)
Q Consensus 203 lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH 279 (397)
++-.. +.|+++|..+++++ ++|+|+ ..|.. .+.....+.+.+.+ ...|.+|+.++.
T Consensus 162 l~~~D---ieilk~L~~~~~vI--------~Vi~Kt--D~Lt~--~E~~~l~~~I~~~L------~~~gi~I~~is~ 217 (427)
T 2qag_B 162 LKSLD---LVTMKKLDSKVNII--------PIIAKA--DAISK--SELTKFKIKITSEL------VSNGVQIYQFPT 217 (427)
T ss_dssp -CHHH---HHHHHHTCSCSEEE--------EEESCG--GGSCH--HHHHHHHHHHHHHH------BTTBCCCCCCC-
T ss_pred CCHHH---HHHHHHHhhCCCEE--------EEEcch--hccch--HHHHHHHHHHHHHH------HHcCCcEEecCC
Confidence 44444 89999999999999 555555 33331 11223445555422 247889998887
No 118
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.49 E-value=7.2e-15 Score=146.66 Aligned_cols=117 Identities=11% Similarity=-0.016 Sum_probs=85.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEEC-ce------eCcEEEEecCCCCCCCCCCcc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYN-SS------VGDGTYFLQEYTIPRGSNSFS 165 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~-G~------~~~ig~v~Q~~~l~~~~~~lt 165 (397)
++++++. .+|++++|+||||||||||+|+|+|+... |+.|+|.++ |. ...+++++|+..++. ..+
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~----~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~d---tpg 277 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNE----ILTNDVSNVSGLGQHTTTAARLYHFPHGGDVID---SPG 277 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSC----CCCC-------------CCCEEEECTTSCEEEE---CHH
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccc----cccCCccccCCCCccceEEEEEEEECCCCEecC---ccc
Confidence 6777775 47999999999999999999999998751 678999887 53 357899999987765 468
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHcC
Q 015952 166 LYDTRSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIGC 219 (397)
Q Consensus 166 v~eni~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~~ 219 (397)
+.++.... ...++....+.++++.+++.. ....+.++| ||+||++||++++.
T Consensus 278 v~e~~l~~-l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli~ 330 (358)
T 2rcn_A 278 VREFGLWH-LEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAIA 330 (358)
T ss_dssp HHTCCCCC-CCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSSC
T ss_pred HHHhhhcC-CCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCCC
Confidence 88753222 134455666778899999944 566678899 99999999998754
No 119
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.48 E-value=4.4e-17 Score=159.79 Aligned_cols=112 Identities=15% Similarity=0.121 Sum_probs=74.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHccc--------CCCCCCCcccEEEECcee-------------------------CcEEE
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVF--------ENDKFASERAQVTYNSSV-------------------------GDGTY 150 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~--------~~~~~~p~~G~I~i~G~~-------------------------~~ig~ 150 (397)
++++|+|+||||||||+|+|.|+. . |+.|+|.++|.. ..+++
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~-----~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~ 79 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIE-----NEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLD 79 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEEC-----SSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEE-----ecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHH
Confidence 689999999999999999999997 6 899999999862 12455
Q ss_pred E---ecCCCCCCCCCCccHHHHHhcCCCChhhHHH-----H------HHHHHHHCCCcccccCCCCCChHHHHHHHHHHH
Q 015952 151 F---LQEYTIPRGSNSFSLYDTRSLSDDASDNINM-----I------KLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHK 216 (397)
Q Consensus 151 v---~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~-----~------~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArA 216 (397)
+ +|++.++. ..++.||..++... .-... . +..++..+++.....+..++|+||+||+..+++
T Consensus 80 l~~~~q~~~~~~---~~~v~E~~~l~~p~-~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~i 155 (318)
T 1nij_A 80 LLDNLDKGNIQF---DRLVIECTGMADPG-PIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRI 155 (318)
T ss_dssp HHHHHHHTSCCC---SEEEEEEETTCCHH-HHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEE
T ss_pred HHhHHhcCCCCC---CEEEEeCCCCCCHH-HHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEE
Confidence 5 57765533 47888888765321 00000 0 111222333322223334689999999977777
Q ss_pred HcCCCCeE
Q 015952 217 IGCEPSVI 224 (397)
Q Consensus 217 L~~~P~iL 224 (397)
++.+|+++
T Consensus 156 ll~k~dl~ 163 (318)
T 1nij_A 156 LLTKTDVA 163 (318)
T ss_dssp EEECTTTC
T ss_pred EEECcccC
Confidence 77777765
No 120
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.48 E-value=7.8e-14 Score=137.69 Aligned_cols=156 Identities=13% Similarity=0.125 Sum_probs=100.5
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----------------CcEEEEecCCCCCCCCC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----------------GDGTYFLQEYTIPRGSN 162 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----------------~~ig~v~Q~~~l~~~~~ 162 (397)
..++|++++|+||||||||||+++|+|+++ |++|+|.+.|.. ..+.+++|.+.+++
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~-----~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p--- 196 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK-----NHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADP--- 196 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCH---
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----hcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCH---
Confidence 347899999999999999999999999999 999999999862 23569999987765
Q ss_pred CccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhcc
Q 015952 163 SFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKS 242 (397)
Q Consensus 163 ~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~ 242 (397)
.+++++|+.++..... .. -+++..|.. .....-+.+.-.++|++..++.++ +||.+|.
T Consensus 197 ~~~v~e~l~~~~~~~~---d~--vliDtaG~~------~~~~~l~~eL~~i~ral~~de~ll--------vLDa~t~--- 254 (328)
T 3e70_C 197 AAVAYDAIQHAKARGI---DV--VLIDTAGRS------ETNRNLMDEMKKIARVTKPNLVIF--------VGDALAG--- 254 (328)
T ss_dssp HHHHHHHHHHHHHHTC---SE--EEEEECCSC------CTTTCHHHHHHHHHHHHCCSEEEE--------EEEGGGT---
T ss_pred HHHHHHHHHHHHhccc---hh--hHHhhccch------hHHHHHHHHHHHHHHHhcCCCCEE--------EEecHHH---
Confidence 6799999865421000 00 001111211 111233455556899999777777 8887763
Q ss_pred ccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec-hhH----------HccccEEEEEeeCCEEe
Q 015952 243 MEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH-GDL----------LSLTDRARIRTYLGELL 299 (397)
Q Consensus 243 LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH-~~~----------~~~aDrI~v~l~~G~iv 299 (397)
. ..++.+..+ ....+.|+|++|| |.. ....-.| .++..|+-+
T Consensus 255 -----~---~~~~~~~~~------~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi-~~i~~Ge~v 307 (328)
T 3e70_C 255 -----N---AIVEQARQF------NEAVKIDGIILTKLDADARGGAALSISYVIDAPI-LFVGVGQGY 307 (328)
T ss_dssp -----T---HHHHHHHHH------HHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCE-EEEECSSST
T ss_pred -----H---HHHHHHHHH------HHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCE-EEEeCCCCc
Confidence 1 122333222 1135889999999 522 2233456 456666654
No 121
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.47 E-value=1.2e-14 Score=145.74 Aligned_cols=118 Identities=15% Similarity=0.106 Sum_probs=79.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCc-ccEEEECcee------CcEEEEecCCCCCCCCCCcc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASE-RAQVTYNSSV------GDGTYFLQEYTIPRGSNSFS 165 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~-~G~I~i~G~~------~~ig~v~Q~~~l~~~~~~lt 165 (397)
|++++ +++|++++|+||||||||||+++|+|+++ |+ +|+|.+.+.. ..+++++|.
T Consensus 128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~-----~~~~g~I~~~e~~~e~~~~~~~~~v~Q~----------- 189 (372)
T 2ewv_A 128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN-----QTKSYHIITIEDPIEYVFKHKKSIVNQR----------- 189 (372)
T ss_dssp HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH-----HHSCCEEEEEESSCCSCCCCSSSEEEEE-----------
T ss_pred HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC-----cCCCcEEEEecccHhhhhccCceEEEee-----------
Confidence 45544 78999999999999999999999999999 88 8999765531 112222221
Q ss_pred HHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccc
Q 015952 166 LYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEG 245 (397)
Q Consensus 166 v~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~ 245 (397)
.+|++ +..+ +.+|+++|..+|++|++||| - |+.+
T Consensus 190 ------------------------~~g~~-----~~~~------~~~l~~~L~~~pd~illdE~---~-d~e~------- 223 (372)
T 2ewv_A 190 ------------------------EVGED-----TKSF------ADALRAALREDPDVIFVGEM---R-DLET------- 223 (372)
T ss_dssp ------------------------EBTTT-----BSCS------HHHHHHHTTSCCSEEEESCC---C-SHHH-------
T ss_pred ------------------------ecCCC-----HHHH------HHHHHHHhhhCcCEEEECCC---C-CHHH-------
Confidence 12221 2233 46999999999999966666 1 2111
Q ss_pred cchhhhHHHHHHHHhcCCCcccccCCceEEEEech-hHHccccEE
Q 015952 246 DSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG-DLLSLTDRA 289 (397)
Q Consensus 246 ~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~-~~~~~aDrI 289 (397)
.....+. ...|.+|+.++|+ .+...+||+
T Consensus 224 --------~~~~l~~-------~~~g~~vi~t~H~~~~~~~~~rl 253 (372)
T 2ewv_A 224 --------VETALRA-------AETGHLVFGTLHTNTAIDTIHRI 253 (372)
T ss_dssp --------HHHHHHH-------HTTTCEEEECCCCCSHHHHHHHH
T ss_pred --------HHHHHHH-------HhcCCEEEEEECcchHHHHHHHH
Confidence 1111111 2458899999993 677777776
No 122
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.46 E-value=6.9e-17 Score=159.93 Aligned_cols=80 Identities=9% Similarity=0.045 Sum_probs=68.2
Q ss_pred CCeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----
Q 015952 69 GSLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS---- 144 (397)
Q Consensus 69 ~~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~---- 144 (397)
+++++++|+++.|+. ..+ |+++||++++|++++|+||||||||||+|+|+|++. |++|+|.+.|.
T Consensus 27 i~~ie~~~~~~~~~~-~~~-----l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~-----~~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 27 ITLAESRRADHRAAV-RDL-----IDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT-----AAGHKVAVLAVDPSS 95 (337)
T ss_dssp HHHHTCSSHHHHHHH-HHH-----HHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH-----HTTCCEEEEEECGGG
T ss_pred HHHHeeCCcccccCh-HHH-----HHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh-----hCCCEEEEEEEcCcc
Confidence 346788899999942 224 999999999999999999999999999999999999 99999999875
Q ss_pred ----------eCcEEEEecCCCCCC
Q 015952 145 ----------VGDGTYFLQEYTIPR 159 (397)
Q Consensus 145 ----------~~~ig~v~Q~~~l~~ 159 (397)
+.++++++|+++++.
T Consensus 96 ~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 96 TRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp GSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred cccccchHHHhhhheeeccCccccc
Confidence 235789999987753
No 123
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.45 E-value=5.2e-15 Score=137.98 Aligned_cols=59 Identities=22% Similarity=0.325 Sum_probs=45.3
Q ss_pred eeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCC--cccEEEECce------eCcEEEEecCCCCCC
Q 015952 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFAS--ERAQVTYNSS------VGDGTYFLQEYTIPR 159 (397)
Q Consensus 96 isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p--~~G~I~i~G~------~~~ig~v~Q~~~l~~ 159 (397)
-.-..++|++++|+||||||||||+|+|+|+++ | .+|.|.+.+. +..++|+||++..|.
T Consensus 9 ~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~-----p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~ 75 (219)
T 1s96_A 9 HHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQP-----LYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFK 75 (219)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHSC-----TTTEEECCCEECSCCCTTCCBTTTBEECCHHHHH
T ss_pred ccccCCCCcEEEEECCCCCCHHHHHHHHhccCC-----CCceEEEEEecCCCCCcccccCceEEECCHHHHH
Confidence 344668999999999999999999999999998 6 6899988775 235788888765544
No 124
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.45 E-value=8.2e-18 Score=151.24 Aligned_cols=166 Identities=8% Similarity=-0.013 Sum_probs=90.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----CcEEEEecCCCCCCCCCCccHHHHHhcCCCChh
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----GDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASD 178 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~ 178 (397)
|++++|+||||||||||+++|++ +.+|.+.++|.. ..+|+++|...... ..++++++.+....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~--------~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~-- 68 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA--------QLDNSAYIEGDIINHMVVGGYRPPWESDEL---LALTWKNITDLTVN-- 68 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH--------HSSSEEEEEHHHHHTTCCTTCCCGGGCHHH---HHHHHHHHHHHHHH--
T ss_pred CeEEEEECCCCCcHHHHHHHHhc--------ccCCeEEEcccchhhhhccccccCccchhH---HHHHHHHHHHHHHH--
Confidence 68999999999999999999986 467889998852 23455555432211 23566665432100
Q ss_pred hHHHHHHHHHHHCCCcccccCCCCC--ChHHHHHHHHHH------HHcCCCCeEeeccccccccchhhhhccccccchhh
Q 015952 179 NINMIKLWIMEGVRHGELVIRRSDS--SSLRNRMRCKAH------KIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVE 250 (397)
Q Consensus 179 ~~~~~~~~ll~~vgl~~~~~~~~~l--SGGqkQRvaIAr------AL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~ 250 (397)
........+++.+......+...++ |+||+|++.++. +++.+|+...+|+ . +|+....
T Consensus 69 ~~~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~----~---------ld~~~~~- 134 (189)
T 2bdt_A 69 FLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE----Q---------MGERCLE- 134 (189)
T ss_dssp HHHTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-----------------CGGGGH-
T ss_pred HHhcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc----c---------CCHHHHH-
Confidence 0000000001111000000111123 777777777776 7777777663331 1 2221111
Q ss_pred hHHHHHHHHhcCCCcccccCCceEEEEech---hHHccccEEEEEeeCCEEeeeCCcccc
Q 015952 251 KQYNQIVATTFNCPYLSFRDDKPVVVVTHG---DLLSLTDRARIRTYLGELLGIPPAKQI 307 (397)
Q Consensus 251 ~~~~~~i~~l~~~~~~~~~~g~TVIivTH~---~~~~~aDrI~v~l~~G~iv~~g~~~el 307 (397)
. .+.+.++ .+.+.++|.+||. ++.++||+| + ++|+++..|+++-+
T Consensus 135 -~-~~~~~~~-------~~~~~~ii~tsh~~~~~~e~~~~~i-~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 135 -L-VEEFESK-------GIDERYFYNTSHLQPTNLNDIVKNL-K--TNPRFIFCMAGDPL 182 (189)
T ss_dssp -H-HHHHHHT-------TCCTTSEEECSSSCGGGHHHHHHHH-H--HCGGGSCC------
T ss_pred -H-HHHHhhc-------CCCccEEEeCCCCChhhHHHHHHHH-h--hCCcEEEeecCCch
Confidence 1 2333332 2357899999997 999999999 4 99999999988654
No 125
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.44 E-value=1.3e-13 Score=125.42 Aligned_cols=158 Identities=12% Similarity=-0.038 Sum_probs=86.7
Q ss_pred ceeeeE-EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHh
Q 015952 93 MTLSDY-DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 171 (397)
Q Consensus 93 L~~isl-~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~ 171 (397)
|+.+.. .+++|++++|+||||||||||++.+++ . +..+.++ +..+..+.. ..+.+...
T Consensus 9 LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~-----~~~~v~~----------i~~~~~~~~----~~~~~~~~ 67 (220)
T 2cvh_A 9 LDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--L-----SGKKVAY----------VDTEGGFSP----ERLVQMAE 67 (220)
T ss_dssp HHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--H-----HCSEEEE----------EESSCCCCH----HHHHHHHH
T ss_pred HHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--H-----cCCcEEE----------EECCCCCCH----HHHHHHHH
Confidence 666665 789999999999999999999999999 4 4333333 322221111 11222111
Q ss_pred cCCCChhhHHHHHHHHHHHCCCcccccCCCCCChH--HHHHHHHHHHHcCC-CCeEeeccccccccchhhhhccccccch
Q 015952 172 LSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSL--RNRMRCKAHKIGCE-PSVIRKVNFVIFVVDGLAVLKSMEGDSD 248 (397)
Q Consensus 172 ~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGG--qkQRvaIArAL~~~-P~iLllDEP~~siLDEpT~~s~LD~~~~ 248 (397)
...... +++++.+ ...+.|++ ++|+++.+++++.+ |+++++||| ++++|.... . .....
T Consensus 68 ~~~~~~-------~~~~~~~-------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~-~~~l~~~~~--~-~~~~~ 129 (220)
T 2cvh_A 68 TRGLNP-------EEALSRF-------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSI-TAHYRAEEN--R-SGLIA 129 (220)
T ss_dssp TTTCCH-------HHHHHHE-------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECC-CCCTTGGGG--S-STTHH
T ss_pred hcCCCh-------HHHhhcE-------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCc-HHHhhhcCc--h-HHHHH
Confidence 000000 1122221 12334444 46789999999986 999966555 333332110 0 00001
Q ss_pred hhhHHHHHHHHhcCCCcccccCCceEEEEech---------------hHHccccEEEEEeeCC
Q 015952 249 VEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG---------------DLLSLTDRARIRTYLG 296 (397)
Q Consensus 249 ~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~---------------~~~~~aDrI~v~l~~G 296 (397)
.....++.+.++. .+.|.|||+++|. .+...||++ ++|+..
T Consensus 130 ~~~~~~~~L~~l~------~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~v-i~l~~~ 185 (220)
T 2cvh_A 130 ELSRQLQVLLWIA------RKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDI-LRLDKL 185 (220)
T ss_dssp HHHHHHHHHHHHH------HHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEE-EEEEEC
T ss_pred HHHHHHHHHHHHH------HHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEE-EEEEEe
Confidence 1111222233321 2358999999992 357899999 567654
No 126
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.44 E-value=5.7e-15 Score=143.89 Aligned_cols=110 Identities=13% Similarity=0.082 Sum_probs=81.5
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEE---Cce---------e-CcEEEEecCCCCCCCC--CC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSS---------V-GDGTYFLQEYTIPRGS--NS 163 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i---~G~---------~-~~ig~v~Q~~~l~~~~--~~ 163 (397)
++.+|++++|+||||||||||+|+|+ +.+ |++|+|.+ +|+ . ..+||++|.|.+.... .+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~-----~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~ 234 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEE-----LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMF 234 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCC-----CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGT
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-Hhh-----CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCccccc
Confidence 45679999999999999999999999 999 99999999 775 1 3689999998764211 25
Q ss_pred ccHHHHH--hcCC--------C---ChhhHHHHHHHHHHHCCCcc--cccCCCCCChHHHHHHHHHH
Q 015952 164 FSLYDTR--SLSD--------D---ASDNINMIKLWIMEGVRHGE--LVIRRSDSSSLRNRMRCKAH 215 (397)
Q Consensus 164 ltv~eni--~~~~--------~---~~~~~~~~~~~ll~~vgl~~--~~~~~~~lSGGqkQRvaIAr 215 (397)
+|+ +|+ .|+. . ...+....+.++++.+++.. ...++..|||.+++++.|||
T Consensus 235 lt~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 235 VKP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp SCG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CCH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788 887 4541 1 22334457889999999953 46677888998889999886
No 127
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.43 E-value=4.3e-16 Score=140.17 Aligned_cols=100 Identities=15% Similarity=0.072 Sum_probs=64.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccCCCCCCCc---ccEEEECcee--------------CcEE----EEecCCCCCCCCC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASE---RAQVTYNSSV--------------GDGT----YFLQEYTIPRGSN 162 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~---~G~I~i~G~~--------------~~ig----~v~Q~~~l~~~~~ 162 (397)
++++|+|+||||||||+++|+|+++ |+ .|.|.++|.. +.+| ++.|++.++-
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~-----~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i--- 74 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR-----ERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFI--- 74 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH-----HTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh-----hcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEE---
Confidence 5899999999999999999999999 87 8999999862 1344 5555443220
Q ss_pred CccHHHHHhcCCCChhhHHHHHHHHHHH-C-CCcccccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 163 SFSLYDTRSLSDDASDNINMIKLWIMEG-V-RHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 163 ~ltv~eni~~~~~~~~~~~~~~~~ll~~-v-gl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
.+ ...+....+.++++. + +++... ...+||||+||++||||++.+|++.
T Consensus 75 ----~~-------~~~~~~a~l~~~i~~~l~g~dt~i--~EglSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 75 ----RR-------VSEEEGNDLDWIYERYLSDYDLVI--TEGFSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp ----EE-------CCHHHHTCHHHHHHHHTTTCSEEE--EESCGGGCCCEEEECSSGGGGGGGC
T ss_pred ----ec-------CChhhhhCHHHHHHhhCCCCCEEE--ECCcCCCCCcEEEEEecccCCCccC
Confidence 00 001111122333333 3 342221 1138999999999999999999885
No 128
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.43 E-value=6.4e-17 Score=164.68 Aligned_cols=121 Identities=10% Similarity=-0.019 Sum_probs=86.6
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--------------CcEEEEe------
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--------------GDGTYFL------ 152 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--------------~~ig~v~------ 152 (397)
|+++ + .++|++++|+||||||||||+++|+|++. |++|+|.+.+.. .++|+.|
T Consensus 159 L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~-----~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~ 231 (418)
T 1p9r_A 159 FRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELN-----SSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRA 231 (418)
T ss_dssp HHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHC-----CTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHH
T ss_pred HHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcC-----CCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHH
Confidence 5555 3 37899999999999999999999999999 999999987752 2345655
Q ss_pred ---cCCCCC--CC-CCCccHHHHHhcCCC--------ChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHc
Q 015952 153 ---QEYTIP--RG-SNSFSLYDTRSLSDD--------ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIG 218 (397)
Q Consensus 153 ---Q~~~l~--~~-~~~ltv~eni~~~~~--------~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~ 218 (397)
|+|.+. .. ....|+.+++.+... ........+ ..+..+++... ..+..|||||+|| |||+|+
T Consensus 232 ~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lgl~~~-~~~~~LSgg~~QR--LaraL~ 307 (418)
T 1p9r_A 232 ILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMGIEPF-LISSSLLGVLAQR--LVRTLC 307 (418)
T ss_dssp HGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHTCCHH-HHHHHEEEEEEEE--EEEEEC
T ss_pred HhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcCCcHH-HHHHHHHHHHHHH--hhhhhc
Confidence 887652 10 012588888866421 111122223 34667788543 2466789999999 999999
Q ss_pred CCCCeE
Q 015952 219 CEPSVI 224 (397)
Q Consensus 219 ~~P~iL 224 (397)
.+|++.
T Consensus 308 ~~p~~~ 313 (418)
T 1p9r_A 308 PDCKEP 313 (418)
T ss_dssp TTTCEE
T ss_pred CCCCcc
Confidence 999998
No 129
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.42 E-value=1.1e-14 Score=129.26 Aligned_cols=83 Identities=13% Similarity=0.186 Sum_probs=65.0
Q ss_pred EEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeC-----cE
Q 015952 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVG-----DG 148 (397)
Q Consensus 74 l~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~-----~i 148 (397)
.+|+++.|+. ..+ ++++||+|++|++++|+||||||||||+|+|+|++ |++|+|.++|..- ..
T Consensus 10 ~~~~~~~~g~-~~~-----l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l------~~~G~V~~~g~~i~~~~~~~ 77 (158)
T 1htw_A 10 DEFSMLRFGK-KFA-----EILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI------GHQGNVKSPTYTLVEEYNIA 77 (158)
T ss_dssp SHHHHHHHHH-HHH-----HHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT------TCCSCCCCCTTTCEEEEEET
T ss_pred CHHHHHHHHH-HHH-----HhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC------CCCCeEEECCEeeeeeccCC
Confidence 3456677742 223 99999999999999999999999999999999987 4679999988521 01
Q ss_pred EEEecCCCCCCCCCCccHHHHHhc
Q 015952 149 TYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 149 g~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
.++||++.+++ +|+.||+.+
T Consensus 78 ~~~~q~~~l~~----ltv~e~l~~ 97 (158)
T 1htw_A 78 GKMIYHFDLYR----LADPEELEF 97 (158)
T ss_dssp TEEEEEEECTT----CSCTTHHHH
T ss_pred Ccceecccccc----CCcHHHHHH
Confidence 27899887764 899888843
No 130
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.41 E-value=6.1e-16 Score=138.60 Aligned_cols=114 Identities=12% Similarity=0.047 Sum_probs=71.3
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--------CcEEEEecCCCCCCCCCCccHHHHH
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--------GDGTYFLQEYTIPRGSNSFSLYDTR 170 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--------~~ig~v~Q~~~l~~~~~~ltv~eni 170 (397)
.+++|++++|+||||||||||+++|+|. ++.|.|.++|.. ..++|++|+.. . ..++.+|+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-------~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~---~~~v~~~l 72 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL-------PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--Q---NRMIMQIA 72 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC-------SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--H---HHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc-------cCCCeEEEcccchhhhhhcccccCCccchhh--h---hHHHHHHH
Confidence 4789999999999999999999999996 457999998852 12355555432 1 35777776
Q ss_pred hcCCCChh--hHHHHHHHHHHHCCCccc---ccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 171 SLSDDASD--NINMIKLWIMEGVRHGEL---VIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 171 ~~~~~~~~--~~~~~~~~ll~~vgl~~~---~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
.+...... .....++.++..+++... ...+..+|+|++||+++||++.++|+++
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l 131 (191)
T 1zp6_A 73 ADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL 131 (191)
T ss_dssp HHHHHHHHHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC
T ss_pred HHHHHHHhccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc
Confidence 54211000 000000000111122111 1123457999999999999999999876
No 131
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.36 E-value=1.1e-14 Score=133.41 Aligned_cols=112 Identities=16% Similarity=0.047 Sum_probs=68.1
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcC-CC---
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLS-DD--- 175 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~-~~--- 175 (397)
.++|++++|+||||||||||+++|+|+++ |+ | ..+|+|+++...+. .+..+++... ..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~-----~~-g--------~~~g~v~~d~~~~~----~~~~~~~~~~~~~~~~ 80 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS-----AQ-G--------LPAEVVPMDGFHLD----NRLLEPRGLLPRKGAP 80 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH-----HT-T--------CCEEEEESGGGBCC----HHHHGGGTCGGGTTSG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hc-C--------CceEEEecCCCcCC----HHHHHHhcccccCCCC
Confidence 47899999999999999999999999998 75 3 24667776643332 2333443211 10
Q ss_pred ---ChhhHHHHHHHHHHHCCCc-ccccCCCCCChHHHHHHHHH-HHHcCCCCeEeeccc
Q 015952 176 ---ASDNINMIKLWIMEGVRHG-ELVIRRSDSSSLRNRMRCKA-HKIGCEPSVIRKVNF 229 (397)
Q Consensus 176 ---~~~~~~~~~~~ll~~vgl~-~~~~~~~~lSGGqkQRvaIA-rAL~~~P~iLllDEP 229 (397)
........+..+...-.+. ....+...+|+||+||+++| ++++.++.++++|||
T Consensus 81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~ 139 (208)
T 3c8u_A 81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAP 139 (208)
T ss_dssp GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCST
T ss_pred chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCc
Confidence 1111222233332221121 12334556799999999887 777777777634443
No 132
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.34 E-value=3.5e-14 Score=138.13 Aligned_cols=102 Identities=18% Similarity=0.049 Sum_probs=70.2
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEE---Ccee----------CcEEEEecCCCCCC-----
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSV----------GDGTYFLQEYTIPR----- 159 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i---~G~~----------~~ig~v~Q~~~l~~----- 159 (397)
|++.+|++++|+||||||||||+|+|+|+.+ |++|+|.+ +|+. +.+|||+|.|.+..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~-----~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~ 238 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK-----LRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEIND 238 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC-----CC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhccccc-----ccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCc
Confidence 4567899999999999999999999999999 99999999 7751 35899999986421
Q ss_pred --------CCCCccHHHHHhcCCC-ChhhHHHHHHHHHHHCCCc-c-cccCCCCCCh
Q 015952 160 --------GSNSFSLYDTRSLSDD-ASDNINMIKLWIMEGVRHG-E-LVIRRSDSSS 205 (397)
Q Consensus 160 --------~~~~ltv~eni~~~~~-~~~~~~~~~~~ll~~vgl~-~-~~~~~~~lSG 205 (397)
..+++++ +|+.|+.. ...+...++.++++.++|. + ...+|..||+
T Consensus 239 ~~~~~~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 239 IEPEELKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp SCHHHHGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 1236788 99888643 2234456788999999994 3 3555666664
No 133
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.34 E-value=1e-13 Score=140.95 Aligned_cols=116 Identities=12% Similarity=0.091 Sum_probs=70.5
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce-----eCcEEEEecCCCCCCCCCCccHH
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS-----VGDGTYFLQEYTIPRGSNSFSLY 167 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~-----~~~ig~v~Q~~~l~~~~~~ltv~ 167 (397)
-++++|+++.|+.++|||+||||||||+|+|+|..+ .+.+. ...+|+++++.. . .++++
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~-----------~i~~~~ftTl~p~~G~V~~~~~--~---~~~l~ 210 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP-----------KIAPYPFTTLSPNLGVVEVSEE--E---RFTLA 210 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC-----------EECCCTTCSSCCEEEEEECSSS--C---EEEEE
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc-----------cccCcccceecceeeEEEecCc--c---eEEEE
Confidence 578999999999999999999999999999999842 11111 223455554420 0 13333
Q ss_pred HHHhcCCC-------ChhhHH--HHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEee
Q 015952 168 DTRSLSDD-------ASDNIN--MIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRK 226 (397)
Q Consensus 168 eni~~~~~-------~~~~~~--~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLll 226 (397)
|+..+... .....+ +++..++..+++. .....++|+||+|++++|++|+..|.+|++
T Consensus 211 DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls--~~~~~~ls~g~~el~~la~aL~~~P~ILVl 276 (416)
T 1udx_A 211 DIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA--DEPLKTLETLRKEVGAYDPALLRRPSLVAL 276 (416)
T ss_dssp ECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT--SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE
T ss_pred eccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc--cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE
Confidence 33322110 000000 0011112222222 223455799999999999999999999944
No 134
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.32 E-value=2.5e-12 Score=115.78 Aligned_cols=80 Identities=10% Similarity=0.118 Sum_probs=54.7
Q ss_pred cCCCCCChHHHHHHHHHHHHcC----CCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCce
Q 015952 198 IRRSDSSSLRNRMRCKAHKIGC----EPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKP 273 (397)
Q Consensus 198 ~~~~~lSGGqkQRvaIArAL~~----~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~T 273 (397)
.++..||||||||++|||+|+. .|+++ +||||| ++||+.... ...+.+.++ ..+.+
T Consensus 60 ~~~~~LSgGekqr~ala~~la~~~~~~~~~l--------lLDEp~--a~LD~~~~~--~~~~~l~~~--------~~~~~ 119 (173)
T 3kta_B 60 KRIEAMSGGEKALTALAFVFAIQKFKPAPFY--------LFDEID--AHLDDANVK--RVADLIKES--------SKESQ 119 (173)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHHHHHSCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHH--------TTTSE
T ss_pred cccccCCHHHHHHHHHHHHHHhcccCCCCEE--------EECCCc--cCCCHHHHH--HHHHHHHHh--------ccCCE
Confidence 3456789999999999999974 46999 555555 667744333 233444332 34568
Q ss_pred EEEEech-hHHccccEEEE-EeeCCE
Q 015952 274 VVVVTHG-DLLSLTDRARI-RTYLGE 297 (397)
Q Consensus 274 VIivTH~-~~~~~aDrI~v-~l~~G~ 297 (397)
+|+|||+ .+..+||+++. .+.+|.
T Consensus 120 ~ivith~~~~~~~ad~i~~v~~~~g~ 145 (173)
T 3kta_B 120 FIVITLRDVMMANADKIIGVSMRDGV 145 (173)
T ss_dssp EEEECSCHHHHTTCSEEEEEEEETTE
T ss_pred EEEEEecHHHHHhCCEEEEEEecCCE
Confidence 9999994 77889999953 234553
No 135
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.29 E-value=3e-14 Score=133.72 Aligned_cols=63 Identities=14% Similarity=0.228 Sum_probs=50.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHH---cccCCCCCCCcccEEEECcee------CcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVTYNSSV------GDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~---Gl~~~~~~~p~~G~I~i~G~~------~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
++++++|+||||||||||+++|+ |+.. |+.|+|.++|.. ..+++++|+..+++ ..++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~-----~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH-----LSSGHFLRENIKASTEVGEMAKQYIEKSLLVP---DHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCC-----EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC---HHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeE-----ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCC---HHHHHHHHHH
Confidence 47999999999999999999999 9999 999999887642 23455677766554 4688888754
No 136
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.29 E-value=1.7e-11 Score=113.19 Aligned_cols=30 Identities=10% Similarity=0.245 Sum_probs=27.7
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHc--ccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISK--VFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~G--l~~ 128 (397)
-|++|++++|+||||||||||++.|++ +.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~ 51 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP 51 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc
Confidence 578999999999999999999999999 565
No 137
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.28 E-value=1.1e-13 Score=134.40 Aligned_cols=114 Identities=11% Similarity=-0.040 Sum_probs=76.0
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCC------
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSD------ 174 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~------ 174 (397)
.++.+++|+||||||||||++.|.+++. +. | .....+.+|+|+..++. .+..+|+.++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~-----~~-g-----~~~~~~~iv~~D~f~~~----~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLM-----EK-Y-----GGEKSIGYASIDDFYLT----HEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HH-H-----GGGSCEEEEEGGGGBCC----HHHHHHHHHHTTTCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhh-----hc-C-----CCCceEEEeccccccCC----hHHHHHHhccccccchh
Confidence 4578999999999999999999999998 53 2 01234556699987664 57888876531
Q ss_pred ----CChhhHHHHHHHHHHHCCCc------c---cccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 175 ----DASDNINMIKLWIMEGVRHG------E---LVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 175 ----~~~~~~~~~~~~ll~~vgl~------~---~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
.+.........+.++.+..+ . ...+...+||||+||+++|++.+.+|+|||+|||
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~ 161 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGW 161 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEES
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCc
Confidence 01111123344555555432 1 1233456799999999998444449999966665
No 138
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.22 E-value=4.9e-15 Score=142.35 Aligned_cols=115 Identities=13% Similarity=0.099 Sum_probs=82.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCC-CCCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEY-TIPRGS 161 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~-~l~~~~ 161 (397)
++++++++++| ++|+||||||||||+|+|+|... + |.|.++|. .+.++++||.. ...+
T Consensus 36 l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~-----~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p-- 104 (274)
T 2x8a_A 36 FKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG-----L--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAP-- 104 (274)
T ss_dssp HHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT-----C--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCS--
T ss_pred HHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC-----C--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCC--
Confidence 88899999999 99999999999999999999988 6 78888885 13577888874 3333
Q ss_pred CCccHHHHHhcCCCChhhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 162 NSFSLYDTRSLSDDASDNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 162 ~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
.+++.|++.......... ... .. ......+.++||||+||+.|++|+.++|++| ||+
T Consensus 105 -~i~~~Deid~~~~~r~~~--~~~------~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~a 162 (274)
T 2x8a_A 105 -CVIFFDEVDALCPRRSDR--ETG------ASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPA 162 (274)
T ss_dssp -EEEEEETCTTTCC-----------------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHH
T ss_pred -CeEeeehhhhhhcccCCC--cch------HHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHh
Confidence 467778776543211110 000 01 1122335567999999999999999999986 555
No 139
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.22 E-value=4.8e-13 Score=130.92 Aligned_cols=107 Identities=12% Similarity=0.039 Sum_probs=66.3
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEE---Ccee---------CcEEEEecCCCCCCCC-CCc
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY---NSSV---------GDGTYFLQEYTIPRGS-NSF 164 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i---~G~~---------~~ig~v~Q~~~l~~~~-~~l 164 (397)
+++.+|++++|+||||||||||+|+|+|+.+ |..|+|.+ +|+. ..+||++|.|.+.... .++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~-----~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~l 242 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG-----LRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDI 242 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC------------------------CCCCCEEEETTEEEESSCSCSSCCCTTC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhccccc-----ccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccC
Confidence 6678999999999999999999999999999 99999998 6651 1279999998765321 246
Q ss_pred cHHHHHh--cCC-------------CChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHH
Q 015952 165 SLYDTRS--LSD-------------DASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRM 210 (397)
Q Consensus 165 tv~eni~--~~~-------------~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQR 210 (397)
++ +++. |+. ....+....+.++++.+++.. ....+..++.|++||
T Consensus 243 t~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 243 EE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVEFMTEIKDR 303 (307)
T ss_dssp CH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHHHHTT
T ss_pred CH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHHHHHHHhhc
Confidence 88 8873 320 011233456788999999954 444556677788774
No 140
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.18 E-value=8.1e-13 Score=137.66 Aligned_cols=71 Identities=14% Similarity=0.143 Sum_probs=56.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee-------CcEEEEecCCCCCCCCCCcc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV-------GDGTYFLQEYTIPRGSNSFS 165 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~-------~~ig~v~Q~~~l~~~~~~lt 165 (397)
++++++.+++|+.++|+||||||||||+|+|+|+++ |++|.|.+.|.. ..++++.|...... ..+
T Consensus 250 l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~-----~~~giitied~~E~~~~~~~~v~~~~r~~~~~~---~~~ 321 (511)
T 2oap_1 250 LAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP-----PDAKVVSIEDTREIKLYHENWIAEVTRTGMGEG---EID 321 (511)
T ss_dssp HHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC-----TTCCEEEEESSCCCCCCCSSEEEEECBCCSSSC---CBC
T ss_pred HHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC-----CCCCEEEEcCcccccCCCCCeEEEEeecccccC---CcC
Confidence 778999999999999999999999999999999999 999999998862 34566666543111 345
Q ss_pred HHHHHh
Q 015952 166 LYDTRS 171 (397)
Q Consensus 166 v~eni~ 171 (397)
+.+++.
T Consensus 322 ~~~~l~ 327 (511)
T 2oap_1 322 MYDLLR 327 (511)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555543
No 141
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.11 E-value=1.7e-11 Score=126.61 Aligned_cols=46 Identities=15% Similarity=0.300 Sum_probs=45.1
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
|+++||+|++ ++++|+||||||||||+++|+|+++ |++|+|.++|.
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~I~~~g~ 65 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI-----PDLTLLNFRNT 65 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC-----CCTTTCCCCCT
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC-----CCCCEEEECCE
Confidence 9999999999 9999999999999999999999999 99999999996
No 142
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.10 E-value=6.5e-13 Score=129.42 Aligned_cols=88 Identities=11% Similarity=0.165 Sum_probs=69.4
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEE-------------------cCCcEEEEECCCCCcHHHHHHHHHcccCCC
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDV-------------------PKTTSLLLIGPKGSGKSSLVNRISKVFEND 130 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I-------------------~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~ 130 (397)
.+|+++||++.|. ++ ++++|+.+ ++|+++||+||||||||||+++|+|++..
T Consensus 36 ~~i~~~~v~~~y~---~~-----~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~- 106 (308)
T 1sq5_A 36 EDLSLEEVAEIYL---PL-----SRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR- 106 (308)
T ss_dssp TTCCHHHHHHTHH---HH-----HHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-
T ss_pred cccchHhHHHHHH---HH-----HHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-
Confidence 4689999999993 24 89999988 99999999999999999999999998751
Q ss_pred CCCCcccEEEE---Ccee------CcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 131 KFASERAQVTY---NSSV------GDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 131 ~~~p~~G~I~i---~G~~------~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
.|++|+|.+ +|.. ..+|++ |.+.++. .+++.+++.+
T Consensus 107 --~~~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~---~~~~~~~~~~ 151 (308)
T 1sq5_A 107 --WPEHRRVELITTDGFLHPNQVLKERGLM-KKKGFPE---SYDMHRLVKF 151 (308)
T ss_dssp --STTCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGG---GBCHHHHHHH
T ss_pred --CCCCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCC---CccHHHHHHH
Confidence 168899999 8752 235666 6665544 4677776644
No 143
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.10 E-value=6.6e-12 Score=114.43 Aligned_cols=123 Identities=13% Similarity=0.094 Sum_probs=65.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccCCCC--------CCCcccEEEECceeCcEEEEecC-----------CCCCCCC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDK--------FASERAQVTYNSSVGDGTYFLQE-----------YTIPRGS 161 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~--------~~p~~G~I~i~G~~~~ig~v~Q~-----------~~l~~~~ 161 (397)
++|++++|+||||||||||+|+|+|+++... -.|..|+ ++|. .|.+++ ..++.
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~----~~~~~~~~~~~~~i~~~~~l~~-- 73 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGK----DYYFVTREMMQRDIAAGDFIEH-- 73 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTT----TBEECCHHHHHHHHHHTCEEEE--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCc----eEEEccHHHHHHHHHcCCCEee--
Confidence 5799999999999999999999999874100 0145565 3442 233322 22221
Q ss_pred CCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhc
Q 015952 162 NSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLK 241 (397)
Q Consensus 162 ~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s 241 (397)
.++.+|+ ++. .. +.+.++++.-...... .. -.|-++... + -..|.++++|+|...+|||+| +
T Consensus 74 --~~~~~n~-~g~-~~----~~i~~~~~~~~~~~~~---~~-~~g~~~~~~--~--~~~~~~~~l~~p~~~ilde~~--~ 135 (198)
T 1lvg_A 74 --AEFSGNL-YGT-SK----EAVRAVQAMNRICVLD---VD-LQGVRSIKK--T--DLCPIYIFVQPPSLDVLEQRL--R 135 (198)
T ss_dssp --EEETTEE-EEE-EH----HHHHHHHHTTCEEEEE---CC-HHHHHHHTT--S--SCCCEEEEEECSCHHHHHHHH--H
T ss_pred --eeecCcc-CCC-CH----HHHHHHHHcCCcEEEE---CC-HHHHHHHHh--c--CCCcEEEEEeCCCHHHHHHHH--H
Confidence 2444444 221 11 2233344432111110 01 122222211 1 236887888898788999999 8
Q ss_pred cccccchh
Q 015952 242 SMEGDSDV 249 (397)
Q Consensus 242 ~LD~~~~~ 249 (397)
++|..+.+
T Consensus 136 ~~d~~~e~ 143 (198)
T 1lvg_A 136 LRNTETEE 143 (198)
T ss_dssp HHTCSCHH
T ss_pred hcCCCCHH
Confidence 88877655
No 144
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.10 E-value=6.7e-14 Score=137.67 Aligned_cols=128 Identities=13% Similarity=0.022 Sum_probs=86.5
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCC-------cEEEEECCCCCcHHHHHHHHHccc----CCCCCCCcccEE
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKT-------TSLLLIGPKGSGKSSLVNRISKVF----ENDKFASERAQV 139 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~G-------e~vaLvGpnGsGKSTLl~~I~Gl~----~~~~~~p~~G~I 139 (397)
+++.++++..|+. ..+ ++++++.+++| +.++|+||||||||||+++|+|.+ . +++|.+
T Consensus 18 ~lr~~~l~~~~g~-~~~-----~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~-----~~sg~~ 86 (334)
T 1in4_A 18 FLRPKSLDEFIGQ-ENV-----KKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIH-----VTSGPV 86 (334)
T ss_dssp TTSCSSGGGCCSC-HHH-----HHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEE-----EEETTT
T ss_pred HcCCccHHHccCc-HHH-----HHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE-----EEechH
Confidence 4556677777753 324 88899999876 899999999999999999999998 6 788888
Q ss_pred EECce----------eCcEEEEecCCCCCCCCCCccHHHHHhcCCCC--------hhhHHHHHHHHHHHCCCcccccCCC
Q 015952 140 TYNSS----------VGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDA--------SDNINMIKLWIMEGVRHGELVIRRS 201 (397)
Q Consensus 140 ~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~--------~~~~~~~~~~ll~~vgl~~~~~~~~ 201 (397)
..++. +..|+++.|.+.+.. ++.+++...... .......+...+..+++.....++.
T Consensus 87 ~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~-----~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~ 161 (334)
T 1in4_A 87 LVKQGDMAAILTSLERGDVLFIDEIHRLNK-----AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSG 161 (334)
T ss_dssp CCSHHHHHHHHHHCCTTCEEEEETGGGCCH-----HHHHHHHHHHHTSCCCC---------------CCCEEEEEESCGG
T ss_pred hcCHHHHHHHHHHccCCCEEEEcchhhcCH-----HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcc
Confidence 76653 346899999877653 677776432110 1112233444556666633556678
Q ss_pred CCChHHHHHHHHH
Q 015952 202 DSSSLRNRMRCKA 214 (397)
Q Consensus 202 ~lSGGqkQRvaIA 214 (397)
.+|+|++||++++
T Consensus 162 ~Ls~~l~sR~~l~ 174 (334)
T 1in4_A 162 LLSSPLRSRFGII 174 (334)
T ss_dssp GSCHHHHTTCSEE
T ss_pred cCCHHHHHhcCce
Confidence 8999999998543
No 145
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.09 E-value=2.5e-10 Score=115.46 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=26.8
Q ss_pred EEcCCcEEEEECCCCCcHHHHHH--HHHcccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVN--RISKVFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~--~I~Gl~~ 128 (397)
-|++|++++|+||||||||||++ ++.++.+
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p 205 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP 205 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC
Confidence 68999999999999999999999 4467776
No 146
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.07 E-value=8.7e-11 Score=114.79 Aligned_cols=96 Identities=17% Similarity=0.164 Sum_probs=71.5
Q ss_pred eeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCC
Q 015952 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDD 175 (397)
Q Consensus 96 isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~ 175 (397)
++++.++|++++|+|||||||||+++.|++++. +..|+|.+.+. + .++ ....
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~-----~~g~kV~lv~~---------D--~~r----~~a~-------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV-----DEGKSVVLAAA---------D--TFR----AAAI-------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEE---------C--TTC----HHHH--------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH-----hcCCEEEEEcc---------c--ccc----HHHH--------
Confidence 566678899999999999999999999999999 88888887553 1 111 1111
Q ss_pred ChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHH---HHHHHHcCCCCeEeeccc
Q 015952 176 ASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMR---CKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 176 ~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRv---aIArAL~~~P~iLllDEP 229 (397)
+....+.+.+++... ...|+|+.|++ ++++|+..+|+++++|+|
T Consensus 149 ------eqL~~~~~~~gl~~~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtp 195 (306)
T 1vma_A 149 ------EQLKIWGERVGATVI----SHSEGADPAAVAFDAVAHALARNKDVVIIDTA 195 (306)
T ss_dssp ------HHHHHHHHHHTCEEE----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEEC
T ss_pred ------HHHHHHHHHcCCcEE----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 122334556666432 35689999999 999999999999966666
No 147
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.07 E-value=7.9e-11 Score=115.11 Aligned_cols=47 Identities=21% Similarity=0.340 Sum_probs=32.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc-ccCCCCCCCcccEEEECce--------eCcEEEEecCCC
Q 015952 105 SLLLIGPKGSGKSSLVNRISK-VFENDKFASERAQVTYNSS--------VGDGTYFLQEYT 156 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G-l~~~~~~~p~~G~I~i~G~--------~~~ig~v~Q~~~ 156 (397)
.+.|.||||+|||||+++|+| ++. |+.|.+.++|. ...+++++|.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~-----~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFG-----PGVYRLKIDVRQFVTASNRKLELNVVSSPYH 93 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSC-----TTCCC------------------CCEECSSE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcC-----CCCCeEEecceeecccccccceeeeecccce
Confidence 389999999999999999999 888 99999998875 245667776643
No 148
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.03 E-value=1e-10 Score=102.33 Aligned_cols=34 Identities=21% Similarity=0.191 Sum_probs=30.4
Q ss_pred ccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 90 VGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 90 ~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.+|+++ +|+.++|+||||||||||+++|++.+.
T Consensus 28 ~~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 28 VYVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp HHHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred HHHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446666 899999999999999999999999998
No 149
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.02 E-value=7.3e-13 Score=126.40 Aligned_cols=108 Identities=14% Similarity=0.212 Sum_probs=78.9
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCC-CCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYT-IPRGS 161 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~-l~~~~ 161 (397)
++++++++++| ++|+||||||||||+++|++... .|.|.+++. ...++++||... ..+
T Consensus 65 l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 133 (278)
T 1iy2_A 65 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP-- 133 (278)
T ss_dssp HHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCS--
T ss_pred HHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC-------CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCC--
Confidence 88899999999 89999999999999999999865 578888874 134677888753 222
Q ss_pred CCccHHHHH-hcCCCC-------hhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 162 NSFSLYDTR-SLSDDA-------SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 162 ~~ltv~eni-~~~~~~-------~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
.+++.|++ .++... ..+....+.+++ ..+||||+||+.+|+|+.++|++|
T Consensus 134 -~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll------------~~lsgg~~~~~~i~~a~t~~p~~l 191 (278)
T 1iy2_A 134 -CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------VEMDGFEKDTAIVVMAATNRPDIL 191 (278)
T ss_dssp -EEEEEETHHHHHCC--------CHHHHHHHHHHH------------HHHTTCCTTCCEEEEEEESCTTSS
T ss_pred -cEEehhhhHhhhcccccccCCcchHHHHHHHHHH------------HHHhCCCCCCCEEEEEecCCchhC
Confidence 46778887 343221 112222333332 246899999999999999999885
No 150
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.02 E-value=6.7e-10 Score=110.73 Aligned_cols=74 Identities=12% Similarity=0.143 Sum_probs=52.1
Q ss_pred CCCCChHHHHHH------HHHHHHcCC-CCeEeeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCc
Q 015952 200 RSDSSSLRNRMR------CKAHKIGCE-PSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDK 272 (397)
Q Consensus 200 ~~~lSGGqkQRv------aIArAL~~~-P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~ 272 (397)
+..+||||+||+ ++||||+.+ |++| +||||| ++||..... ...+.+.++ ..+.
T Consensus 278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~l--------llDEp~--~~LD~~~~~--~l~~~l~~~--------~~~~ 337 (371)
T 3auy_A 278 IDNLSGGEQIAVALSLRLAIANALIGNRVECI--------ILDEPT--VYLDENRRA--KLAEIFRKV--------KSIP 337 (371)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEE--------EEESTT--TTCCHHHHH--HHHHHHHHC--------CSCS
T ss_pred hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeE--------EEeCCC--CcCCHHHHH--HHHHHHHHh--------ccCC
Confidence 457899999988 667999999 9999 555555 667644332 233333332 2346
Q ss_pred eEEEEech-hHHccccEEEEEee
Q 015952 273 PVVVVTHG-DLLSLTDRARIRTY 294 (397)
Q Consensus 273 TVIivTH~-~~~~~aDrI~v~l~ 294 (397)
+||++||+ .+..+||+++ +|+
T Consensus 338 ~vi~~th~~~~~~~~d~~~-~l~ 359 (371)
T 3auy_A 338 QMIIITHHRELEDVADVII-NVK 359 (371)
T ss_dssp EEEEEESCGGGGGGCSEEE-EEE
T ss_pred eEEEEEChHHHHhhCCEEE-EEE
Confidence 89999995 6789999995 565
No 151
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.01 E-value=1.9e-10 Score=102.20 Aligned_cols=36 Identities=19% Similarity=0.404 Sum_probs=32.3
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G 137 (397)
+|++++|+.++|+||||||||||+++|++.+. |.+|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~-----~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY-----EKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH-----HHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHH-----HHcC
Confidence 56678899999999999999999999999998 7666
No 152
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.00 E-value=6.8e-13 Score=124.57 Aligned_cols=108 Identities=14% Similarity=0.212 Sum_probs=78.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCC-CCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYT-IPRGS 161 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~-l~~~~ 161 (397)
++++++++++| ++|+||||||||||+++|++... .|.+.++|. ...++++||... ..+
T Consensus 41 ~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-------~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-- 109 (254)
T 1ixz_A 41 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP-- 109 (254)
T ss_dssp HHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-------CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSS--
T ss_pred HHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCC--
Confidence 88899999999 99999999999999999999765 578888874 134667888753 222
Q ss_pred CCccHHHHH-hcCCCC-------hhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 162 NSFSLYDTR-SLSDDA-------SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 162 ~~ltv~eni-~~~~~~-------~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
.+++.|++ .++... ..+..+.+.+++ ..+||||+||+.+|+|+.++|++|
T Consensus 110 -~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll------------~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 110 -CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL------------VEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp -EEEEEETHHHHHC---------CHHHHHHHHHHH------------HHHHTCCTTCCEEEEEEESCGGGS
T ss_pred -eEEEehhhhhhhcccCccccccchHHHHHHHHHH------------HHHhCCCCCCCEEEEEccCCchhC
Confidence 46777777 443221 112222333333 245899999999999999999875
No 153
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.99 E-value=2.9e-11 Score=108.98 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=45.7
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccH
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSL 166 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv 166 (397)
|+++++|++++|+||||||||||+++|+|+++ .+.+.+. ...++|+||++..+. .+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 68 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA---------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQ---AMVK 68 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS---------SEEECCCEECSCCCTTCCBTTTBEECCHHHHH---HHHH
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC---------CeEEeceeccCCCchhHhcCceEEeccHHHHH---HHHh
Confidence 57788999999999999999999999999964 2344432 345789999876655 4566
Q ss_pred HHHHhc
Q 015952 167 YDTRSL 172 (397)
Q Consensus 167 ~eni~~ 172 (397)
.+++..
T Consensus 69 ~~~~~~ 74 (205)
T 3tr0_A 69 EGAFLE 74 (205)
T ss_dssp HTCEEE
T ss_pred cCcEEe
Confidence 665543
No 154
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.96 E-value=1.6e-10 Score=106.69 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=29.1
Q ss_pred ceee-eEEEcCCcEEEEECCCCCcHHHHHH-HHHcccC
Q 015952 93 MTLS-DYDVPKTTSLLLIGPKGSGKSSLVN-RISKVFE 128 (397)
Q Consensus 93 L~~i-sl~I~~Ge~vaLvGpnGsGKSTLl~-~I~Gl~~ 128 (397)
|+.+ .--+++|++++|+||||||||||+. ++.++.+
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6666 6678999999999999999999955 4455555
No 155
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.94 E-value=3.7e-11 Score=124.94 Aligned_cols=171 Identities=16% Similarity=0.143 Sum_probs=98.0
Q ss_pred eeeEEEcCCcEEEEECCCCCcHHHHHHHHHc--ccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCc--cHHHHH
Q 015952 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSF--SLYDTR 170 (397)
Q Consensus 95 ~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~G--l~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~l--tv~eni 170 (397)
-+++++.++..++|.|++||||||++|+|.. ++. ++.|++.+.+..-+. .-|+.+...+ ++ +|.++.
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~-----~~p~~v~l~liDpK~-~el~~~~~lP---hl~~~Vvtd~ 229 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYK-----AQPEDVRFIMIDPKM-LELSVYEGIP---HLLTEVVTDM 229 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTT-----CCTTTEEEEEECCSS-SGGGGGTTCT---TBSSSCBCSH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHh-----CCCceEEEEEECCch-hhhhhhccCC---cccceeecCH
Confidence 3789999999999999999999999999876 556 666777765542221 1234333211 22 222222
Q ss_pred hcCCC----ChhhHHHHHHHHHHHCCCccccc----CCCCCChHHHHHH----------HHHHHHcCCCC-eEeeccccc
Q 015952 171 SLSDD----ASDNINMIKLWIMEGVRHGELVI----RRSDSSSLRNRMR----------CKAHKIGCEPS-VIRKVNFVI 231 (397)
Q Consensus 171 ~~~~~----~~~~~~~~~~~ll~~vgl~~~~~----~~~~lSGGqkQRv----------aIArAL~~~P~-iLllDEP~~ 231 (397)
..... ...+.+++. +++..+|...... ....+|+||+|+. ++|+++...|. ++
T Consensus 230 ~~a~~~L~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivl------- 301 (512)
T 2ius_A 230 KDAANALRWCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVV------- 301 (512)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCCEEEE-------
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCCcEEE-------
Confidence 11111 233444554 6788888743321 1234688988753 46777888898 67
Q ss_pred cccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEech---------hHHccccEEEE
Q 015952 232 FVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTHG---------DLLSLTDRARI 291 (397)
Q Consensus 232 siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH~---------~~~~~aDrI~v 291 (397)
++||++ ..++.... ...+.+.++.. ....-|.++|++||+ ....+.+||++
T Consensus 302 -vIDE~~--~ll~~~~~---~~~~~l~~Lar---~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 302 -LVDEFA--DLMMTVGK---KVEELIARLAQ---KARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp -EEETHH--HHHHHHHH---HHHHHHHHHHH---HCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred -EEeCHH--HHHhhhhH---HHHHHHHHHHH---HhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 556655 33331111 12233333210 112359999999994 23567788843
No 156
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.93 E-value=1.6e-10 Score=107.11 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=22.9
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHH-cccC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS-KVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~-Gl~~ 128 (397)
.+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -----CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 78899999999999999999999999999999 9984
No 157
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.92 E-value=4.8e-11 Score=111.89 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=41.6
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
.|+++|+...|+ - +++|.+ ++++|+||||||||||+++|+|++. |++|+|.++|.
T Consensus 9 ~l~l~~~~~~~~----------~---~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~-----~~~G~i~~~g~ 63 (227)
T 1qhl_A 9 SLTLINWNGFFA----------R---TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI-----PDLTLLHFRNT 63 (227)
T ss_dssp EEEEEEETTEEE----------E---EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS-----CCTTTC-----
T ss_pred EEEEEeeecccC----------C---EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc-----cCCCeEEECCE
Confidence 577888765552 1 455566 8999999999999999999999999 99999999885
No 158
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.85 E-value=3.9e-11 Score=121.05 Aligned_cols=156 Identities=9% Similarity=-0.025 Sum_probs=90.3
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHc------------ccCCCCCCCcccEEEECcee-----------Cc---EEEEe
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISK------------VFENDKFASERAQVTYNSSV-----------GD---GTYFL 152 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~G------------l~~~~~~~p~~G~I~i~G~~-----------~~---ig~v~ 152 (397)
.+++|..++|||+||||||||+|+|+| ... |+.|.|.+.|.+ +. ..++.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~-----p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lv 90 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATID-----PEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVF 90 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCC-----TTEEEEEECCHHHHHHHHHHCCSEEECEEEEEE
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeec-----ceeeeeeeCCcchhhhhhhcccccccCcceEEE
Confidence 457899999999999999999999999 444 899999998731 12 23555
Q ss_pred cCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCC-cc----c-ccCCCCCChHHHHHHHHHHHHcCCC--CeE
Q 015952 153 QEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRH-GE----L-VIRRSDSSSLRNRMRCKAHKIGCEP--SVI 224 (397)
Q Consensus 153 Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl-~~----~-~~~~~~lSGGqkQRvaIArAL~~~P--~iL 224 (397)
+.+.+.. ..+..+++. ......+..+.. -+ . ......+||+. +| +++
T Consensus 91 D~pGl~~---~~s~~e~L~----------~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~------------dP~~di~ 145 (392)
T 1ni3_A 91 DIAGLTK---GASTGVGLG----------NAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDV------------DPIRDLS 145 (392)
T ss_dssp CTGGGCC---CCCSSSSSC----------HHHHHHHTTCSEEEEEEECCCTTCSSCCSSSS------------CHHHHHH
T ss_pred ecccccc---CCcHHHHHH----------HHHHHHHHHHHHHHHHHhccccceeeeecccc------------Ccchhhh
Confidence 6655543 233322220 001111111111 00 0 11122235542 88 888
Q ss_pred eeccccccccchhhhhccccccchhhhHHHHHHHHhcCCCcccccCCceEEEEec--hhHHccccEEEEEeeCC-EEeee
Q 015952 225 RKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATTFNCPYLSFRDDKPVVVVTH--GDLLSLTDRARIRTYLG-ELLGI 301 (397)
Q Consensus 225 llDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH--~~~~~~aDrI~v~l~~G-~iv~~ 301 (397)
++|||+ ...|..... .....+.... .+.|.|++ +| ..+..+||++.-.|++| +++..
T Consensus 146 --------ildeel--~~~D~~~~~--k~~~~l~~~~------~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~ 205 (392)
T 1ni3_A 146 --------IIVDEL--LIKDAEFVE--KHLEGLRKIT------SRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRK 205 (392)
T ss_dssp --------HHHHHH--HHHHHHHHH--HHHHHHHHTT------CCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGG
T ss_pred --------hchhhh--HHHHHHHHH--HHHHHHHHHH------HhcCCccc--cccHHHHHHHHHHHHHHhccCCceeec
Confidence 777777 445532221 1222332220 23577764 99 38889999993159999 88766
Q ss_pred CCc
Q 015952 302 PPA 304 (397)
Q Consensus 302 g~~ 304 (397)
++.
T Consensus 206 ~~~ 208 (392)
T 1ni3_A 206 GDW 208 (392)
T ss_dssp SCC
T ss_pred CCC
Confidence 553
No 159
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.81 E-value=6.1e-09 Score=100.96 Aligned_cols=113 Identities=14% Similarity=0.048 Sum_probs=75.9
Q ss_pred EEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEE
Q 015952 72 TDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYF 151 (397)
Q Consensus 72 lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v 151 (397)
+.++++++.|+.. -++++|+ +|++++++|+|||||||+++.|++++. +..|+|.+.+..
T Consensus 77 ~~~~~l~~~~~~~--------~~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~-----~~~~~v~l~~~d------ 135 (295)
T 1ls1_A 77 TVYEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVAAD------ 135 (295)
T ss_dssp HHHHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH-----HTTCCEEEEECC------
T ss_pred HHHHHHHHHHCCC--------CceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEecCC------
Confidence 4567788888421 2457887 899999999999999999999999999 888888876531
Q ss_pred ecCCCCCCCCCCccHHHHHhcCCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 152 LQEYTIPRGSNSFSLYDTRSLSDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 152 ~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
+.. ....+ ....+.+..++...... ...+-.+.+|.+|+++...+++++|+|+|
T Consensus 136 -----~~~---~~~~~---------------ql~~~~~~~~l~~~~~~-~~~~p~~l~~~~l~~~~~~~~D~viiDtp 189 (295)
T 1ls1_A 136 -----TQR---PAARE---------------QLRLLGEKVGVPVLEVM-DGESPESIRRRVEEKARLEARDLILVDTA 189 (295)
T ss_dssp -----SSC---HHHHH---------------HHHHHHHHHTCCEEECC-TTCCHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred -----ccc---HhHHH---------------HHHHhcccCCeEEEEcC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCC
Confidence 111 01111 01112344455332111 12344566899999999899999966666
No 160
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.79 E-value=1.3e-08 Score=98.72 Aligned_cols=141 Identities=13% Similarity=0.086 Sum_probs=81.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhH
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNI 180 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~ 180 (397)
.+|++++++|||||||||+++.|++.+. +++| .++.++.+++. . .+..+.+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~-----~~~G--------~~V~lv~~D~~--r----~~a~eqL~~-------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISM-----LEKH--------KKIAFITTDTY--R----IAAVEQLKT-------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHH-----HTTC--------CCEEEEECCCS--S----TTHHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHH-----HhcC--------CEEEEEecCcc--c----chHHHHHHH--------
Confidence 4799999999999999999999999998 7777 24666766652 2 233333321
Q ss_pred HHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccccccccchhhhhccccccchhhhHHHHHHHHh
Q 015952 181 NMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNFVIFVVDGLAVLKSMEGDSDVEKQYNQIVATT 260 (397)
Q Consensus 181 ~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP~~siLDEpT~~s~LD~~~~~~~~~~~~i~~l 260 (397)
..+..++.... ..+ +..-+.+|++ +.+|+++|+|.| ++|.... ..+..+.++
T Consensus 156 ------~~~~~gl~~~~----~~~-~~~l~~al~~--~~~~dlvIiDT~------------G~~~~~~---~~~~el~~~ 207 (296)
T 2px0_A 156 ------YAELLQAPLEV----CYT-KEEFQQAKEL--FSEYDHVFVDTA------------GRNFKDP---QYIDELKET 207 (296)
T ss_dssp ------HHTTTTCCCCB----CSS-HHHHHHHHHH--GGGSSEEEEECC------------CCCTTSH---HHHHHHHHH
T ss_pred ------HHHhcCCCeEe----cCC-HHHHHHHHHH--hcCCCEEEEeCC------------CCChhhH---HHHHHHHHH
Confidence 22233442111 112 3445666665 489999955544 3343222 123333333
Q ss_pred cCCCcccccCCceEEE-Eech--hHHccccEEEEEeeCCEEee
Q 015952 261 FNCPYLSFRDDKPVVV-VTHG--DLLSLTDRARIRTYLGELLG 300 (397)
Q Consensus 261 ~~~~~~~~~~g~TVIi-vTH~--~~~~~aDrI~v~l~~G~iv~ 300 (397)
+.. ....+.++++ .||+ ++.+.++++. .+..+.++.
T Consensus 208 l~~---~~~~~~~lVl~at~~~~~~~~~~~~~~-~l~~~giVl 246 (296)
T 2px0_A 208 IPF---ESSIQSFLVLSATAKYEDMKHIVKRFS-SVPVNQYIF 246 (296)
T ss_dssp SCC---CTTEEEEEEEETTBCHHHHHHHTTTTS-SSCCCEEEE
T ss_pred Hhh---cCCCeEEEEEECCCCHHHHHHHHHHHh-cCCCCEEEE
Confidence 210 0122334444 3883 7778888774 466666665
No 161
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.75 E-value=1e-08 Score=104.79 Aligned_cols=166 Identities=10% Similarity=0.077 Sum_probs=95.4
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc-EEEECceeCcEEEEecCCCCCCCCCCccHHHH--
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDT-- 169 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G-~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~en-- 169 (397)
|+++..-+++|+++.|.|++|+|||||+..+++... +..| .|. |+.-+-.. -.+...
T Consensus 193 LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~-----~~~g~~Vl---------~~s~E~s~------~~l~~r~~ 252 (454)
T 2r6a_A 193 LDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA-----TKTNENVA---------IFSLEMSA------QQLVMRML 252 (454)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH-----HHSSCCEE---------EEESSSCH------HHHHHHHH
T ss_pred HHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH-----HhCCCcEE---------EEECCCCH------HHHHHHHH
Confidence 888888899999999999999999999999999776 5444 333 33222100 011111
Q ss_pred ----------HhcCCCChhhHHHHHHHHHHHCCCcc-cccCCCCCChHHHHHHHHHHHHc--CCCCeEeeccccccccch
Q 015952 170 ----------RSLSDDASDNINMIKLWIMEGVRHGE-LVIRRSDSSSLRNRMRCKAHKIG--CEPSVIRKVNFVIFVVDG 236 (397)
Q Consensus 170 ----------i~~~~~~~~~~~~~~~~ll~~vgl~~-~~~~~~~lSGGqkQRvaIArAL~--~~P~iLllDEP~~siLDE 236 (397)
+..+... .....++.++++.++... .......+|.++.+ +.||+++ .+|+++++ |+
T Consensus 253 ~~~~~~~~~~l~~g~l~-~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~--~~~~~l~~~~~~~livI--------D~ 321 (454)
T 2r6a_A 253 CAEGNINAQNLRTGKLT-PEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIR--AKCRRLKQESGLGMIVI--------DY 321 (454)
T ss_dssp HHHHTCCHHHHHTSCCC-HHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHH--HHHHHHHTTTCCCEEEE--------EC
T ss_pred HHHcCCCHHHHhcCCCC-HHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHH--HHHHHHHHHcCCCEEEE--------cc
Confidence 1111111 122234444555554322 23345678999877 5566666 68999955 55
Q ss_pred hhhhcccccc----ch--hhhHHHHHHHHhcCCCcccccCCceEEEEec---------h------------hHHccccEE
Q 015952 237 LAVLKSMEGD----SD--VEKQYNQIVATTFNCPYLSFRDDKPVVVVTH---------G------------DLLSLTDRA 289 (397)
Q Consensus 237 pT~~s~LD~~----~~--~~~~~~~~i~~l~~~~~~~~~~g~TVIivTH---------~------------~~~~~aDrI 289 (397)
++. ..... .+ +.....+.+..+ .++.|.+||+++| + .+...||.|
T Consensus 322 l~~--~~~~~~~~~~~~~~i~~i~~~Lk~l------Ake~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~v 393 (454)
T 2r6a_A 322 LQL--IQGSGRSKENRQQEVSEISRSLKAL------ARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIV 393 (454)
T ss_dssp GGG--SCCSCC----CHHHHHHHHHHHHHH------HHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEE
T ss_pred HHH--hccCCCCCCCHHHHHHHHHHHHHHH------HHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEE
Confidence 442 22111 11 111122223222 1246899999999 1 356779999
Q ss_pred EEEeeCCEE
Q 015952 290 RIRTYLGEL 298 (397)
Q Consensus 290 ~v~l~~G~i 298 (397)
++|+.++.
T Consensus 394 -i~l~r~~~ 401 (454)
T 2r6a_A 394 -AFLYRDDY 401 (454)
T ss_dssp -EEEEETTC
T ss_pred -EEEecccc
Confidence 56876654
No 162
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.74 E-value=6.1e-10 Score=105.73 Aligned_cols=54 Identities=19% Similarity=0.293 Sum_probs=35.7
Q ss_pred CeEEEEeE-EEEECCCceEeeccCceeeeEEEcC---CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 70 SLTDAKNK-ILSYTPGAWIENVGGMTLSDYDVPK---TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 70 ~~lel~nv-s~~Y~~~~~v~~~~~L~~isl~I~~---Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++++++|+ +|+|+.+..+ |+++||+|++ |++++|+|++||||||+.++|++.+.
T Consensus 16 ~~l~~~~~~~~~~~~~~~~-----l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQI-----LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CHH-----HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CceEEcceeeEEecCcchh-----hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 58999999 9999333334 9999999999 99999999999999999999999665
No 163
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.74 E-value=4.2e-09 Score=93.34 Aligned_cols=111 Identities=11% Similarity=-0.012 Sum_probs=66.8
Q ss_pred eeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEE---------EECc-------eeCcEEEEecCCCC
Q 015952 94 TLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV---------TYNS-------SVGDGTYFLQEYTI 157 (397)
Q Consensus 94 ~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I---------~i~G-------~~~~ig~v~Q~~~l 157 (397)
+++++++.+| +++|+||||||||||+++|.+++. +..|.. ...| ....|.++||++.-
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~ 91 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG-----GLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDR 91 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT-----CCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTC
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc-----CCcccccccccchheeecccccCCCCceEEEEEEEeCCCc
Confidence 7799999999 999999999999999999999988 555432 2222 12468999998642
Q ss_pred CC--CCCCccHHHHHhcC------CCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHH
Q 015952 158 PR--GSNSFSLYDTRSLS------DDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRC 212 (397)
Q Consensus 158 ~~--~~~~ltv~eni~~~------~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRva 212 (397)
.. ....+++...+.-. ..........+.+++..+++.... +.-++.||.|+++
T Consensus 92 ~~~~~~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~--~~~~~qg~~~~l~ 152 (182)
T 3kta_A 92 GFPIDEDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDG--YNIVLQGDITKFI 152 (182)
T ss_dssp CSSSSSSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTC--TTEECTTCTTHHH
T ss_pred ccccCCcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCC--CEEEEcccHHHHH
Confidence 10 00013333222110 001111235567788888884321 2224666665553
No 164
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.71 E-value=3e-10 Score=120.37 Aligned_cols=132 Identities=11% Similarity=0.013 Sum_probs=79.3
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcc-cEEEECce-----eCcEEEEecCC-----------
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASER-AQVTYNSS-----VGDGTYFLQEY----------- 155 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~-G~I~i~G~-----~~~ig~v~Q~~----------- 155 (397)
++++++.+.+|+.++|+||||||||||+++|++++. +.. |.+.+.+. ...++++++..
T Consensus 50 l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~~~~e~~~~~ 124 (604)
T 3k1j_A 50 VEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP-----TETLEDILVFPNPEDENMPRIKTVPACQGRRIVEKYREK 124 (604)
T ss_dssp HHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC-----CSSCEEEEEECCTTCTTSCEEEEEETTHHHHHHHHHHHH
T ss_pred HhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC-----cccCCeEEEeCCcccccCCcEEEEecchHHHHHHHHHHh
Confidence 888999999999999999999999999999999998 776 77777665 23577776542
Q ss_pred --------CCCCCCCCccHHHHHhcCCCCh---hhHHHHHHHHHHHCCC-cccccCCCCCChHHHHHHHHHHHHcCCCCe
Q 015952 156 --------TIPRGSNSFSLYDTRSLSDDAS---DNINMIKLWIMEGVRH-GELVIRRSDSSSLRNRMRCKAHKIGCEPSV 223 (397)
Q Consensus 156 --------~l~~~~~~ltv~eni~~~~~~~---~~~~~~~~~ll~~vgl-~~~~~~~~~lSGGqkQRvaIArAL~~~P~i 223 (397)
........+++.+|+....... ...........+.+|. .........+|+|++|++..++....++.+
T Consensus 125 ~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~a~~gv 204 (604)
T 3k1j_A 125 AKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHRAHKGV 204 (604)
T ss_dssp HHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHHTTTSE
T ss_pred hccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCceeeecCCCE
Confidence 0000001234444443321100 0000000011122232 112222356799999999999999999999
Q ss_pred Eeeccc
Q 015952 224 IRKVNF 229 (397)
Q Consensus 224 LllDEP 229 (397)
|++||.
T Consensus 205 L~LDEi 210 (604)
T 3k1j_A 205 LFIDEI 210 (604)
T ss_dssp EEETTG
T ss_pred EEEech
Confidence 955555
No 165
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.70 E-value=1.2e-10 Score=116.91 Aligned_cols=129 Identities=12% Similarity=0.075 Sum_probs=77.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEE-Cce----eCcEEEEecCCCCCCCCCCccHH
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTY-NSS----VGDGTYFLQEYTIPRGSNSFSLY 167 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i-~G~----~~~ig~v~Q~~~l~~~~~~ltv~ 167 (397)
|+++|+.+++|++++|+||||||||||+++|+|.. +|.+.. ++. ...+|++||.+.++.. .++..
T Consensus 159 l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~--------~g~~~~~~~~~~~~~~~lg~~~q~~~~l~d--d~~~~ 228 (377)
T 1svm_A 159 LKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC--------GGKALNVNLPLDRLNFELGVAIDQFLVVFE--DVKGT 228 (377)
T ss_dssp HHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH--------CCEEECCSSCTTTHHHHHGGGTTCSCEEET--TCCCS
T ss_pred HHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc--------CCcEEEEeccchhHHHHHHHhcchhHHHHH--HHHHH
Confidence 89999999999999999999999999999999854 466665 322 1246777877532110 11111
Q ss_pred HHHhcCCCChhh--HHHHHHHHHHHC---C------------C--cccccCCCCCChHHHHHHHHHHHHcCCCCeEeecc
Q 015952 168 DTRSLSDDASDN--INMIKLWIMEGV---R------------H--GELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVN 228 (397)
Q Consensus 168 eni~~~~~~~~~--~~~~~~~ll~~v---g------------l--~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDE 228 (397)
.++.-....... ....+...++.. . + +........+++|++||++.+.+++..|++++
T Consensus 229 ~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLli--- 305 (377)
T 1svm_A 229 GGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKH--- 305 (377)
T ss_dssp TTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHH---
T ss_pred HHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEE---
Confidence 110000000000 012223344311 0 1 11223345569999999998888899999882
Q ss_pred ccccccchhh
Q 015952 229 FVIFVVDGLA 238 (397)
Q Consensus 229 P~~siLDEpT 238 (397)
.||+|+
T Consensus 306 ----yLd~~~ 311 (377)
T 1svm_A 306 ----CLERSE 311 (377)
T ss_dssp ----HHHTCT
T ss_pred ----EEeCCH
Confidence 266666
No 166
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.68 E-value=2.8e-09 Score=95.46 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=33.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCC------cccEEEECcee
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSV 145 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p------~~G~I~i~G~~ 145 (397)
.++|+|+||||||||++.++|...+....| ++|+|.++|..
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 77 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 77 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEE
Confidence 689999999999999999999887322223 57899999863
No 167
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.64 E-value=1.8e-08 Score=100.07 Aligned_cols=30 Identities=20% Similarity=0.416 Sum_probs=26.3
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-+++|+++.|.||+|||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999888876554
No 168
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.49 E-value=5.9e-08 Score=87.09 Aligned_cols=31 Identities=32% Similarity=0.432 Sum_probs=27.4
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++|++|++++|+||||||||||+++|++++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~ 31 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS 31 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4688999999999999999999999999997
No 169
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.48 E-value=7.7e-09 Score=93.63 Aligned_cols=39 Identities=15% Similarity=0.238 Sum_probs=30.1
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
.++-++|++++|+||||||||||+++|++.+ |.+.++|.
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~---------g~~~i~~d 61 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET---------GLEFAEAD 61 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH---------CCEEEEGG
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh---------CCeEEccc
Confidence 4566889999999999999999999999875 55777764
No 170
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.47 E-value=1.5e-08 Score=95.62 Aligned_cols=50 Identities=12% Similarity=0.154 Sum_probs=43.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHH---cccCCCCCCCcccEEE--------ECce-----------eCcEEEEecCC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRIS---KVFENDKFASERAQVT--------YNSS-----------VGDGTYFLQEY 155 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~---Gl~~~~~~~p~~G~I~--------i~G~-----------~~~ig~v~Q~~ 155 (397)
++|++++|+|||||||||++++|+ |+.. +++|.+. .+|. ...++++||..
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~-----~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL-----LDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE-----EEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc-----CCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 789999999999999999999999 9999 9999998 6665 24678888764
No 171
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.47 E-value=1.3e-08 Score=92.07 Aligned_cols=58 Identities=17% Similarity=0.259 Sum_probs=41.8
Q ss_pred EeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEE--EECce
Q 015952 75 KNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV--TYNSS 144 (397)
Q Consensus 75 ~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I--~i~G~ 144 (397)
+|++..++. +.. .+..++..++|++++|+||||||||||+++|++.+. ..|.+ .++|.
T Consensus 3 ~~~~~~~~~---~~~---~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~------~~G~~~~~~d~d 62 (200)
T 3uie_A 3 TNIKWHECS---VEK---VDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY------QKGKLCYILDGD 62 (200)
T ss_dssp -------CC---CCH---HHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH------HTTCCEEEEEHH
T ss_pred CCCcccccc---cCH---HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH------hcCceEEEecCc
Confidence 456665532 222 777888889999999999999999999999999886 45777 77764
No 172
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.46 E-value=2.5e-09 Score=111.01 Aligned_cols=111 Identities=14% Similarity=0.160 Sum_probs=78.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee----------CcEEEEecCCC-CCCCC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV----------GDGTYFLQEYT-IPRGS 161 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~----------~~ig~v~Q~~~-l~~~~ 161 (397)
++++++.+++| +.|+||||||||||+++|++... .+.+.++|.. ..+..+||... ..+
T Consensus 56 ~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~-------~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p-- 124 (499)
T 2dhr_A 56 FHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR-------VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAP-- 124 (499)
T ss_dssp TTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-------CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSS--
T ss_pred hhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC-------CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCC--
Confidence 67788889999 89999999999999999999764 4678887741 23566787753 222
Q ss_pred CCccHHHHHh-cCCCC-------hhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 162 NSFSLYDTRS-LSDDA-------SDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 162 ~~ltv~eni~-~~~~~-------~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
...+.|++. ++... .++..+.+.+++. .+|||++|+..|++|..++|++ +|++
T Consensus 125 -~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~------------~Ldg~~~~~~viviAatn~p~~--LD~a 185 (499)
T 2dhr_A 125 -CIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV------------EMDGFEKDTAIVVMAATNRPDI--LDPA 185 (499)
T ss_dssp -CEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH------------HGGGCCSSCCCEEEECCSCGGG--SCTT
T ss_pred -CEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH------------HhcccccCccEEEEEecCChhh--cCcc
Confidence 467777773 33221 2233334444443 2578888999999999999987 5777
No 173
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.42 E-value=8.6e-08 Score=86.59 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=25.5
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++||||++++|++++|+||+||||||+.+.|++.+.
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~ 50 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN 50 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 999999999999999999999999999999998664
No 174
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.41 E-value=1e-06 Score=86.97 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=31.8
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHc--ccCCCCCCCcccEEEE
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK--VFENDKFASERAQVTY 141 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~G--l~~~~~~~p~~G~I~i 141 (397)
|++++++++ .++|||++|||||||+|.|.| +++ +.+|.++-
T Consensus 27 l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp-----~~~~~vT~ 69 (360)
T 3t34_A 27 LPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLP-----RGSGIVTR 69 (360)
T ss_dssp C----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSC-----CCSSSCCC
T ss_pred cccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCC-----CCCCcccC
Confidence 899999998 899999999999999999999 666 66666543
No 175
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.39 E-value=9e-08 Score=85.64 Aligned_cols=26 Identities=27% Similarity=0.703 Sum_probs=24.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|++++|+||||||||||+++|+|+++
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 57899999999999999999999987
No 176
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.37 E-value=1.2e-07 Score=84.48 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=26.1
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+|++++|+||||||||||+++|+++++
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3689999999999999999999999886
No 177
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.36 E-value=1.1e-07 Score=93.18 Aligned_cols=47 Identities=15% Similarity=0.343 Sum_probs=42.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
++++||++++|++++|+|||||||||++..|++++. +..|+|.+.+.
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~-----~~g~kVllid~ 141 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA-----ELGYKVLIAAA 141 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH-----HTTCCEEEEEC
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEeC
Confidence 367999999999999999999999999999999999 88999988654
No 178
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.27 E-value=1.2e-07 Score=94.34 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=31.8
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEE
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 139 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I 139 (397)
-+++|+++.|.||+|||||||+..+++... +..|.|
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~-----~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ-----KMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHH-----HTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHH-----hcCCeE
Confidence 478999999999999999999999999887 665554
No 179
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.20 E-value=4.1e-07 Score=82.42 Aligned_cols=40 Identities=23% Similarity=0.263 Sum_probs=35.5
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECc
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G 143 (397)
..++|++++|+|+||||||||+++|++++. +..|.|.+.+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~-----~~~~~v~~~~ 57 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR-----EQGISVCVFH 57 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHh-----hcCCeEEEec
Confidence 357899999999999999999999999998 8888887654
No 180
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.15 E-value=1.1e-06 Score=87.52 Aligned_cols=119 Identities=13% Similarity=0.072 Sum_probs=62.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCC------CCCcccEEEECcee----CcEEEEecCCCCCCCCCCccHHHHHh---
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDK------FASERAQVTYNSSV----GDGTYFLQEYTIPRGSNSFSLYDTRS--- 171 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~------~~p~~G~I~i~G~~----~~ig~v~Q~~~l~~~~~~ltv~eni~--- 171 (397)
+++|+|++|||||||+|.++|...... ..++.|.|.++|.. ...|++.|.+.-.-..+ .+.++.+.
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~lp~~lve~f-~~tl~~~~~aD 259 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRGIPPQIVDAF-FVTLSEAKYSD 259 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEEECCCBCSSCCGGGHHHH-HHHHHGGGGSS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEEeCCCchhcCCHHHHHHH-HHHHHHHHhCC
Confidence 499999999999999999999764100 01567999998852 12233333211000000 01122221
Q ss_pred ---cCCC---Ch---hhHHHHHHHHHHHCCCccc-----ccCCCCCChHHHHHHHHH----HHH-cCCCCeE
Q 015952 172 ---LSDD---AS---DNINMIKLWIMEGVRHGEL-----VIRRSDSSSLRNRMRCKA----HKI-GCEPSVI 224 (397)
Q Consensus 172 ---~~~~---~~---~~~~~~~~~ll~~vgl~~~-----~~~~~~lSGGqkQRvaIA----rAL-~~~P~iL 224 (397)
+... .. .+....+.++++.+++... .++...+|++++||+.++ +++ ..+|+++
T Consensus 260 ~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~ 331 (364)
T 2qtf_A 260 ALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVI 331 (364)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEE
T ss_pred EEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEE
Confidence 1111 11 1122334567777765322 244444588899988877 666 5455543
No 181
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.14 E-value=1e-06 Score=80.35 Aligned_cols=28 Identities=29% Similarity=0.437 Sum_probs=26.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++|++++|+||||||||||++.|++.++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 6799999999999999999999999987
No 182
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.09 E-value=4.5e-07 Score=89.02 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=33.4
Q ss_pred ceeeeEEEcCCc------EEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTT------SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge------~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|++++..|.+++ ++||+||||||||||+++|++++.
T Consensus 76 l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 76 LQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 888888888877 999999999999999999999987
No 183
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.08 E-value=9e-07 Score=92.91 Aligned_cols=41 Identities=20% Similarity=0.302 Sum_probs=36.8
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc-EEE-ECce
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA-QVT-YNSS 144 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G-~I~-i~G~ 144 (397)
.+++|++++|+|+||||||||+++|+|++. |++| ++. ++|.
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~-----~~~G~~i~~lDgD 407 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLM-----EMGGRCVTLLDGD 407 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHH-----TTCSSCEEEESSH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhc-----ccCCceEEEECCc
Confidence 578999999999999999999999999999 8887 674 7774
No 184
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.07 E-value=1.2e-06 Score=80.93 Aligned_cols=38 Identities=21% Similarity=0.382 Sum_probs=31.9
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
.+.++|++++|+|+||||||||+++|+|+ .|+|.+.+.
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L~~~---------~g~v~~~~~ 52 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHFEKY---------KNDICLLTE 52 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTTGGG---------TTTEEEECC
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhc---------cCCeEEEec
Confidence 34588999999999999999999999996 366777654
No 185
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.05 E-value=3.2e-06 Score=83.51 Aligned_cols=101 Identities=10% Similarity=0.031 Sum_probs=68.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
|+.+.--+.+|+++.|.|++|+|||||+..++.-.. ...+. +.|+.=+ +
T Consensus 36 LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a-----~~g~~---------Vl~fSlE---------m-------- 84 (338)
T 4a1f_A 36 LDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL-----NDDRG---------VAVFSLE---------M-------- 84 (338)
T ss_dssp HHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH-----HTTCE---------EEEEESS---------S--------
T ss_pred HHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-----HcCCe---------EEEEeCC---------C--------
Confidence 666666789999999999999999999998887655 32222 3332211 1
Q ss_pred CCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
+.++...+.......+.+.... -..+|.++.||++.|...+.++++.+.|+|
T Consensus 85 ---s~~ql~~Rlls~~~~v~~~~l~--~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~ 136 (338)
T 4a1f_A 85 ---SAEQLALRALSDLTSINMHDLE--SGRLDDDQWENLAKCFDHLSQKKLFFYDKS 136 (338)
T ss_dssp ---CHHHHHHHHHHHHHCCCHHHHH--HTCCCHHHHHHHHHHHHHHHHSCEEEECCT
T ss_pred ---CHHHHHHHHHHHhhCCCHHHHh--cCCCCHHHHHHHHHHHHHHhcCCeEEeCCC
Confidence 2233334444444444443332 247899999999999999999999955555
No 186
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.00 E-value=4.5e-06 Score=86.10 Aligned_cols=34 Identities=29% Similarity=0.544 Sum_probs=28.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++++++.+++| +.|+||+|+|||||+++|++...
T Consensus 41 ~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 41 FNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp HHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred HhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence 45566667777 88999999999999999998654
No 187
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.99 E-value=3.2e-06 Score=76.28 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=35.5
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCC
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIP 158 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~ 158 (397)
=++++|.+++|+|++||||||+++.|++.+. .+.++.|+..++
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~------------------~~~~i~~D~~~~ 58 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP------------------NCSVISQDDFFK 58 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST------------------TEEEEEGGGGBC
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC------------------CcEEEeCCcccc
Confidence 3568899999999999999999999999764 257777776554
No 188
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.97 E-value=3.1e-06 Score=77.49 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.9
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|+...+|++++|+||||||||||++.|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34456899999999999999999999999875
No 189
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.96 E-value=4.4e-06 Score=74.60 Aligned_cols=41 Identities=27% Similarity=0.383 Sum_probs=30.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCC------cccEEEECcee
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFAS------ERAQVTYNSSV 145 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p------~~G~I~i~G~~ 145 (397)
.++|+|+||||||||++.++|........| ..|.|.++|..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~ 53 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT 53 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEE
Confidence 589999999999999999999853222123 36889998863
No 190
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=97.93 E-value=1.2e-05 Score=87.65 Aligned_cols=29 Identities=21% Similarity=0.402 Sum_probs=25.3
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+..|+.+.|+||+||||||++.++.+...
T Consensus 106 l~~~~~vii~gpTGSGKTtllp~ll~~~~ 134 (773)
T 2xau_A 106 YQNNQIMVFVGETGSGKTTQIPQFVLFDE 134 (773)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HhCCCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46789999999999999999999977655
No 191
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.92 E-value=4.1e-06 Score=72.98 Aligned_cols=27 Identities=26% Similarity=0.692 Sum_probs=25.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.|++++|+||||||||||+++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 467899999999999999999999877
No 192
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.92 E-value=3.9e-06 Score=73.52 Aligned_cols=27 Identities=26% Similarity=0.502 Sum_probs=24.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.+|++++|+|||||||||++++|++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence 568999999999999999999999864
No 193
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.87 E-value=8.2e-06 Score=70.87 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+++.++++.+| +.+|+|||||||||++.+|.-.+
T Consensus 14 ~~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHH
Confidence 44456666665 99999999999999999997443
No 194
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.87 E-value=1.6e-06 Score=87.13 Aligned_cols=54 Identities=15% Similarity=0.116 Sum_probs=47.6
Q ss_pred CeEEEEeEEEEECCCceEeeccCce--------------eeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMT--------------LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~--------------~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.-++++|+++.|+..... |+ |+++.|.+|+.++|+||+|||||||++.|++...
T Consensus 132 ~ri~Fe~ltp~yP~er~~-----Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 132 NKILFENLTPLHANSRLR-----MERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp TSCCTTTSCEESCCSBCC-----CCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccc-----cccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 357899999999765534 88 8999999999999999999999999999999764
No 195
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.85 E-value=2.8e-06 Score=88.89 Aligned_cols=46 Identities=26% Similarity=0.388 Sum_probs=41.5
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
++++++++ +|+.++|+||||||||||+++|++++. +..|.|.+.|.
T Consensus 99 l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~-----~~~~~i~~~~~ 144 (543)
T 3m6a_A 99 VQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG-----RKFVRISLGGV 144 (543)
T ss_dssp HHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT-----CEEEEECCCC-
T ss_pred HHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC-----CCeEEEEeccc
Confidence 77788888 899999999999999999999999998 88899988774
No 196
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.84 E-value=5.9e-06 Score=72.82 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=31.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc--EEEECce
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSS 144 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G--~I~i~G~ 144 (397)
++|++++|+|++||||||++++|++.+. + .| .+.+++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~-----~-~g~~~i~~d~~ 42 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLV-----C-HGIPCYTLDGD 42 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHH-----H-TTCCEEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHh-----h-CCCcEEEECCh
Confidence 4689999999999999999999999887 5 56 5666653
No 197
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.84 E-value=2.4e-06 Score=84.05 Aligned_cols=62 Identities=16% Similarity=0.179 Sum_probs=49.2
Q ss_pred eEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECc
Q 015952 71 LTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (397)
Q Consensus 71 ~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G 143 (397)
+++.+++.+.|+. ..+ ++++++.+.+|.+++|+|++|||||||++.|++.+. +..|+|.+-+
T Consensus 30 ~ie~~~~~~~~~~-~~~-----~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~-----~~~~~v~v~~ 91 (341)
T 2p67_A 30 LVESRHPRHQALS-TQL-----LDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI-----REGLKVAVIA 91 (341)
T ss_dssp HHHCCCHHHHHHH-HHH-----HHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred HhhcCCchhhhHH-HHH-----HHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEEe
Confidence 3455556566632 223 888999999999999999999999999999999998 7777776644
No 198
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.84 E-value=6e-05 Score=74.12 Aligned_cols=28 Identities=14% Similarity=0.201 Sum_probs=25.9
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999999998874
No 199
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.84 E-value=3.1e-06 Score=77.04 Aligned_cols=34 Identities=18% Similarity=0.416 Sum_probs=29.9
Q ss_pred CcEEEEECCCCCcHHHHHHHHHccc---CCCCCCCcccEEEE
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVF---ENDKFASERAQVTY 141 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~---~~~~~~p~~G~I~i 141 (397)
+.+++|+|||||||||++++|++.+ . ++.|.+..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~-----~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHL-----LDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEE-----EEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc-----ccCcceee
Confidence 5689999999999999999999876 5 77888776
No 200
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.83 E-value=1.2e-07 Score=92.58 Aligned_cols=36 Identities=28% Similarity=0.400 Sum_probs=33.6
Q ss_pred ceeeeEEEcCCcE--EEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~--vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.++..++.|++ +.+.||+|+||||+++++++.+.
T Consensus 34 ~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 34 ITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 7788899999998 99999999999999999999876
No 201
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.81 E-value=8.2e-06 Score=79.37 Aligned_cols=103 Identities=10% Similarity=-0.008 Sum_probs=64.3
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSL 172 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~ 172 (397)
|+.+.--+++|+++.|.|++|+|||||+..++.-.- - .| ..+.|+.=+ ++
T Consensus 58 LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a-----~-~g--------~~vl~~slE---------~s------- 107 (315)
T 3bh0_A 58 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMS-----D-ND--------DVVNLHSLE---------MG------- 107 (315)
T ss_dssp HHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHH-----T-TT--------CEEEEEESS---------SC-------
T ss_pred HHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH-----H-cC--------CeEEEEECC---------CC-------
Confidence 777776799999999999999999999888875332 1 12 123343211 11
Q ss_pred CCCChhhHHHHHHHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeEeeccc
Q 015952 173 SDDASDNINMIKLWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVIRKVNF 229 (397)
Q Consensus 173 ~~~~~~~~~~~~~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iLllDEP 229 (397)
.++...+.......+.+.........+|.+++||++.|...+.++++.+.|+|
T Consensus 108 ----~~~l~~R~~~~~~~i~~~~l~~~~~~l~~~~~~~l~~a~~~l~~~~i~i~d~~ 160 (315)
T 3bh0_A 108 ----KKENIKRLIVTAGSINAQKIKAARRDFASEDWGKLSMAIGEISNSNINIFDKA 160 (315)
T ss_dssp ----HHHHHHHHHHHHTTCCHHHHHSCHHHHCSSCHHHHHHHHHHHHTSCEEEECCS
T ss_pred ----HHHHHHHHHHHHcCCCHHHHhcCCCCCCHHHHHHHHHHHHHHhCCCEEEECCC
Confidence 22222333333333333222111112799999999999999888899855544
No 202
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.81 E-value=0.00017 Score=70.22 Aligned_cols=24 Identities=21% Similarity=0.555 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|.||+|+|||||++.+++...
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~ 69 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYK 69 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999999887
No 203
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.80 E-value=9.9e-06 Score=75.27 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=31.2
Q ss_pred ceeeeEEEc---CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEE
Q 015952 93 MTLSDYDVP---KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (397)
Q Consensus 93 L~~isl~I~---~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~ 140 (397)
|.++|+++. +|.+++|.|++||||||+++.|+..+. + .+.+.
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~-----~-~~~~~ 57 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV-----K-DYDVI 57 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT-----T-TSCEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh-----c-CCCce
Confidence 788888887 899999999999999999999999998 6 55554
No 204
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=97.74 E-value=1.4e-05 Score=78.91 Aligned_cols=27 Identities=19% Similarity=0.400 Sum_probs=23.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..-.++++|++|+|||||+|.++|...
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~ 192 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP 192 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 345899999999999999999998643
No 205
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.73 E-value=9.6e-06 Score=80.13 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=34.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
+++.+++|+|++|||||||+|.|.|.+. +..|+|.+.+.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~-----~~~~~v~V~~~ 110 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT-----ERGHKLSVLAV 110 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEEEEEC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhh-----hcCCeEEEEee
Confidence 4578999999999999999999999998 88888877554
No 206
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.72 E-value=9.1e-06 Score=73.79 Aligned_cols=42 Identities=19% Similarity=0.302 Sum_probs=37.2
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc--EEEECce
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA--QVTYNSS 144 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G--~I~i~G~ 144 (397)
+.+++|.+++|+|++||||||+.+.|++.+. |..| .+.+++.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~-----~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV-----RDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH-----HHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc-----cccCCcEEEECCh
Confidence 4568899999999999999999999999998 8888 7888763
No 207
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.69 E-value=7.7e-05 Score=72.60 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=25.6
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
-+++|+++.|.||+|||||||+..++.-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999988764
No 208
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.63 E-value=3.1e-05 Score=70.48 Aligned_cols=34 Identities=32% Similarity=0.379 Sum_probs=27.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+.+.++++.+| +++|+|||||||||++.+|.-++
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~~~l 47 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGL 47 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence 44566677765 99999999999999999986433
No 209
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.58 E-value=2.2e-06 Score=85.14 Aligned_cols=84 Identities=14% Similarity=0.130 Sum_probs=42.0
Q ss_pred CeEEEEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECcee--C-
Q 015952 70 SLTDAKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSV--G- 146 (397)
Q Consensus 70 ~~lel~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~--~- 146 (397)
..+.++|+++.|+. ..+ +++++|+| +|+|++|+|||||++.|.|... +..+.+...+.. .
T Consensus 16 ~~v~~~~l~~~~~~-k~~-----~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~-----~~~~~~~~~~~~~~~t 78 (361)
T 2qag_A 16 GYVGFANLPNQVHR-KSV-----KKGFEFTL------MVVGESGLGKSTLINSLFLTDL-----YPERVIPGAAEKIERT 78 (361)
T ss_dssp -----CCHHHHHHT-HHH-----HHCCEECE------EECCCTTSCHHHHHHHHTTCCC--------------------C
T ss_pred ceEEeccchHHhCC-eee-----cCCCCEEE------EEEcCCCCCHHHHHHHHhCCCC-----CCCCcccCCCcccCCc
Confidence 46888999888853 323 78888876 9999999999999999988755 444444332221 1
Q ss_pred ----cEEEEecCCCCCCCCCCccHHHHHhcC
Q 015952 147 ----DGTYFLQEYTIPRGSNSFSLYDTRSLS 173 (397)
Q Consensus 147 ----~ig~v~Q~~~l~~~~~~ltv~eni~~~ 173 (397)
..++.+|..... ..++++|+..++
T Consensus 79 i~~~~~~~~~~~~~~~---~~l~i~DTpG~g 106 (361)
T 2qag_A 79 VQIEASTVEIEERGVK---LRLTVVDTPGYG 106 (361)
T ss_dssp EEEEEEEEC----CEE---EEEEEEC-----
T ss_pred eeEEEEEEEeecCCcc---cceEEEEecccc
Confidence 123334432221 146888887774
No 210
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.56 E-value=1.3e-05 Score=71.83 Aligned_cols=32 Identities=16% Similarity=0.368 Sum_probs=29.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
++++|+..+++ .++|+|++|+|||||++.+.+
T Consensus 16 l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 16 LQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 88899998887 478999999999999999986
No 211
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.54 E-value=0.00028 Score=71.89 Aligned_cols=37 Identities=19% Similarity=0.404 Sum_probs=32.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G 143 (397)
++.+++++||+||||||++..|++.+. +..++|.+-+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~-----~~G~kVllv~ 132 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYK-----KRGYKVGLVA 132 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEEe
Confidence 578999999999999999999999999 7777776643
No 212
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.54 E-value=2.4e-05 Score=83.83 Aligned_cols=118 Identities=14% Similarity=0.079 Sum_probs=64.2
Q ss_pred eEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce----------eCcEEEEecCCCCCCCCCCccH
Q 015952 97 DYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS----------VGDGTYFLQEYTIPRGSNSFSL 166 (397)
Q Consensus 97 sl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~----------~~~ig~v~Q~~~l~~~~~~ltv 166 (397)
|+++++|..++|+|++|||||||++.|.+..... +..|+| .+|. .+.+++.+|...++.....+++
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~---~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nl 78 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAK---ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFL 78 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSS---SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCC---Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEE
Confidence 4677899999999999999999999999876511 367777 4443 2356666665544331111222
Q ss_pred HHHHhcCCCChhhHHHHHHHHHHHCCCccc-ccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 167 YDTRSLSDDASDNINMIKLWIMEGVRHGEL-VIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 167 ~eni~~~~~~~~~~~~~~~~ll~~vgl~~~-~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
+|.- ........+...+...+..-. ..-...++...++.+..++. ..-|-++
T Consensus 79 iDTp-----G~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~-~~ip~il 131 (665)
T 2dy1_A 79 LDAP-----GYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAER-LGLPRMV 131 (665)
T ss_dssp EECC-----CSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHH-TTCCEEE
T ss_pred EeCC-----CccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHH-ccCCEEE
Confidence 2211 111222334455665554222 22223345555555555554 2445555
No 213
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.53 E-value=5.8e-05 Score=66.92 Aligned_cols=32 Identities=19% Similarity=0.333 Sum_probs=20.6
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
++++|++.++. .++++|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 88899998877 678999999999999999987
No 214
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.51 E-value=4.6e-05 Score=68.44 Aligned_cols=78 Identities=14% Similarity=0.026 Sum_probs=43.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHhcCCCChhhHHHHH
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRSLSDDASDNINMIK 184 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~~~~~~~~~~~~~~ 184 (397)
+++|+|||||||||+.++|+++-. ..+++- .+...+.. ... ...
T Consensus 4 ~i~l~G~~GsGKST~~~~La~lg~----------~~id~d--------------------~~~~~~~~--~~~----~~~ 47 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDLGV----------PLVDAD--------------------VVAREVVA--KDS----PLL 47 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTTTC----------CEEEHH--------------------HHHHHTTC--SSC----HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC----------cccchH--------------------HHHHHHcc--CCh----HHH
Confidence 689999999999999999998321 233321 01111100 000 123
Q ss_pred HHHHHHCCCcccccCCCCCChHHHHHHHHHHHHcCCCCeE
Q 015952 185 LWIMEGVRHGELVIRRSDSSSLRNRMRCKAHKIGCEPSVI 224 (397)
Q Consensus 185 ~~ll~~vgl~~~~~~~~~lSGGqkQRvaIArAL~~~P~iL 224 (397)
.++.+.+|.... .+.|+.+|..+++.+..+|+.+
T Consensus 48 ~~i~~~~g~~~~------~~~g~~~r~~l~~~~f~~~~~~ 81 (206)
T 1jjv_A 48 SKIVEHFGAQIL------TEQGELNRAALRERVFNHDEDK 81 (206)
T ss_dssp HHHHHHHCTTCC------------CHHHHHHHHHTCHHHH
T ss_pred HHHHHHhCHHHh------ccCccccHHHHHHHHhCCHHHH
Confidence 344555554221 3788999999999988888765
No 215
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.50 E-value=3.1e-05 Score=78.75 Aligned_cols=55 Identities=13% Similarity=0.186 Sum_probs=44.5
Q ss_pred EEeEEEEECCCceEeeccCceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECc
Q 015952 74 AKNKILSYTPGAWIENVGGMTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (397)
Q Consensus 74 l~nvs~~Y~~~~~v~~~~~L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G 143 (397)
.+++++.|+.. -++++|+ ++++++++|+|||||||++..|++++. +..|+|.+.+
T Consensus 79 ~~~L~~~~~~~--------~~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~-----~~g~~Vllvd 133 (425)
T 2ffh_A 79 YEALKEALGGE--------ARLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK-----GKGRRPLLVA 133 (425)
T ss_dssp HHHHHHHTTSS--------CCCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEE
T ss_pred HHHHHHHhCCC--------cccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH-----HcCCeEEEee
Confidence 34566777422 2457777 899999999999999999999999999 8888888755
No 216
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.50 E-value=5.9e-05 Score=76.70 Aligned_cols=26 Identities=27% Similarity=0.445 Sum_probs=23.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+..+.|.||+|+|||||+++|++...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999998775
No 217
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.49 E-value=8.2e-05 Score=64.93 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.4
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
++|..++|+|++|+|||||+|.+.|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367889999999999999999999864
No 218
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.47 E-value=4.6e-05 Score=67.44 Aligned_cols=38 Identities=26% Similarity=0.448 Sum_probs=32.1
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEE
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVT 140 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~ 140 (397)
+...+|.++.|+|++||||||+.+.|++.+. +..+.+.
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~-----~~~~~~~ 45 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ-----KEGYRVE 45 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH-----HTTCCEE
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEE
Confidence 3446799999999999999999999999988 6666653
No 219
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.47 E-value=0.00096 Score=63.08 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=23.5
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++..+.|.||+|+|||||++.+++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 456789999999999999999998654
No 220
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.47 E-value=0.00012 Score=74.31 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=30.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCC---CC----CCCcccEEEECce
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFEN---DK----FASERAQVTYNSS 144 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~---~~----~~p~~G~I~i~G~ 144 (397)
.++|+|+||||||||+|.|.|.... +. -.+.+|.+.++|.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 7999999999999999999997530 00 0156789999886
No 221
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.44 E-value=5.7e-05 Score=67.06 Aligned_cols=32 Identities=28% Similarity=0.534 Sum_probs=26.6
Q ss_pred eeeEEEcCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 95 LSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 95 ~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
++|+...+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 47888899999999999999999999999875
No 222
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.44 E-value=5.4e-05 Score=68.24 Aligned_cols=29 Identities=28% Similarity=0.677 Sum_probs=26.1
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+|.+++|+||||||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 46799999999999999999999988764
No 223
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.43 E-value=0.00026 Score=68.60 Aligned_cols=28 Identities=21% Similarity=0.484 Sum_probs=25.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+..+.|.||+|+|||||++.+++...
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~ 70 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH 70 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4467899999999999999999999886
No 224
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.41 E-value=2.2e-05 Score=75.96 Aligned_cols=56 Identities=13% Similarity=0.172 Sum_probs=44.0
Q ss_pred EEeEEEEECCCceEeeccCcee-eeEEEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECc
Q 015952 74 AKNKILSYTPGAWIENVGGMTL-SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNS 143 (397)
Q Consensus 74 l~nvs~~Y~~~~~v~~~~~L~~-isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G 143 (397)
.+++.+.|+.. .++ ++++.+ |++++++|++|+||||++..|++.+. +..|+|.+.+
T Consensus 77 ~~~l~~~~~~~--------~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~-----~~g~~v~l~~ 133 (297)
T 1j8m_F 77 YDELSNLFGGD--------KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK-----KKGFKVGLVG 133 (297)
T ss_dssp HHHHHHHTTCS--------CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH-----HTTCCEEEEE
T ss_pred HHHHHHHhccc--------cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH-----HCCCeEEEEe
Confidence 45566667422 245 777766 99999999999999999999999998 7777777644
No 225
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.34 E-value=0.00077 Score=68.39 Aligned_cols=36 Identities=8% Similarity=0.026 Sum_probs=30.9
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|+.+.--+++|+++.|.|++|+|||||+..++.-..
T Consensus 190 LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 190 LDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 666665699999999999999999999988877554
No 226
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.33 E-value=8.6e-05 Score=66.43 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
+++|+|+|||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 227
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.30 E-value=0.0016 Score=64.43 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=25.7
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|+++.|.||+|||||||...++.-..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 78999999999999999999988776543
No 228
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.29 E-value=0.00016 Score=63.06 Aligned_cols=22 Identities=32% Similarity=0.534 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|++|+|||||++.++|-
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999984
No 229
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.25 E-value=0.00014 Score=73.18 Aligned_cols=41 Identities=15% Similarity=0.308 Sum_probs=33.9
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcc-----------cCCCCCCCcccEEEECce
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKV-----------FENDKFASERAQVTYNSS 144 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl-----------~~~~~~~p~~G~I~i~G~ 144 (397)
.+..|..++|||++|+|||||+|+|+|. .. |..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~-----p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTID-----PNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------C-----CSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccC-----ceeEEEEECCc
Confidence 4567888999999999999999999998 44 78898888764
No 230
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.22 E-value=9.9e-05 Score=71.20 Aligned_cols=26 Identities=23% Similarity=0.336 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
++.+++|+|++|||||||+|.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34589999999999999999999964
No 231
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=97.19 E-value=0.0002 Score=70.95 Aligned_cols=31 Identities=32% Similarity=0.411 Sum_probs=27.6
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHH
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRIS 124 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~ 124 (397)
+++..+++.+| +++|+|||||||||++.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 66678888876 99999999999999999987
No 232
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.18 E-value=0.00017 Score=63.34 Aligned_cols=24 Identities=33% Similarity=0.704 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|||||||++.+.|...
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~ 27 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKK 27 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 489999999999999999999754
No 233
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.18 E-value=0.00019 Score=61.80 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998654
No 234
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.13 E-value=0.00022 Score=63.64 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=23.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++|+|+||||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999999876
No 235
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.13 E-value=0.00019 Score=64.17 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+++|+|++||||||+.+.|++.+.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999988653
No 236
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.11 E-value=0.00022 Score=62.54 Aligned_cols=26 Identities=23% Similarity=0.611 Sum_probs=22.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35789999999999999999999853
No 237
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=97.03 E-value=0.00021 Score=66.37 Aligned_cols=31 Identities=32% Similarity=0.594 Sum_probs=24.0
Q ss_pred eeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 96 isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++.+++| +.|+||+|||||||+++|++...
T Consensus 40 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 40 LGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ---CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 34444555 88999999999999999999765
No 238
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.02 E-value=0.00033 Score=60.22 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|+|++||||||+.+.|+..+.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~ 26 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELK 26 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999987654
No 239
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.01 E-value=8.7e-05 Score=73.73 Aligned_cols=36 Identities=25% Similarity=0.586 Sum_probs=33.0
Q ss_pred ceeeeEEEcCCcE--EEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~--vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.+++.+++|+. ++|+|++||||||+.++|++.+.
T Consensus 12 l~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 12 LQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 7778889999998 99999999999999999999765
No 240
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.99 E-value=0.00037 Score=64.22 Aligned_cols=28 Identities=39% Similarity=0.529 Sum_probs=24.5
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
-.+|.+++|+|++||||||+.+.|++.+
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 3678999999999999999999999743
No 241
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.98 E-value=0.00044 Score=60.20 Aligned_cols=26 Identities=31% Similarity=0.501 Sum_probs=23.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999998664
No 242
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.97 E-value=0.00034 Score=65.40 Aligned_cols=39 Identities=23% Similarity=0.382 Sum_probs=30.9
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
..+++.++.|+|++||||||+.+.|+..+. . +.+.+++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-----~--~~~~~~~D 66 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-----G--NIVIIDGD 66 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-----T--CCEEECGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-----C--CcEEEecH
Confidence 346678999999999999999999998765 2 44666663
No 243
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.94 E-value=0.00018 Score=64.58 Aligned_cols=24 Identities=33% Similarity=0.641 Sum_probs=22.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|+|++||||||+++.|...+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999998876
No 244
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.92 E-value=0.00032 Score=65.64 Aligned_cols=26 Identities=27% Similarity=0.538 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.-+++|.||+||||||+.+.|+..+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999996543
No 245
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.90 E-value=0.0015 Score=57.48 Aligned_cols=33 Identities=27% Similarity=0.261 Sum_probs=23.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccCCCCCCCccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G 137 (397)
.++|+|++|||||||++.+.+-.......|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 588999999999999976655332222336655
No 246
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.89 E-value=0.00053 Score=59.96 Aligned_cols=26 Identities=12% Similarity=0.230 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|.++.|.|++||||||+.+.|+..+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987554
No 247
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=96.87 E-value=0.00058 Score=62.79 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||+|.|.|-..
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~ 54 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKV 54 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCc
Confidence 579999999999999999999776
No 248
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.85 E-value=0.00055 Score=58.48 Aligned_cols=19 Identities=37% Similarity=0.634 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 015952 105 SLLLIGPKGSGKSSLVNRI 123 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I 123 (397)
+++|+||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 249
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.82 E-value=0.00057 Score=60.05 Aligned_cols=27 Identities=15% Similarity=0.382 Sum_probs=23.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998644
No 250
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.82 E-value=0.00066 Score=61.42 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=21.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
.+-+++|.|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999987
No 251
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=96.81 E-value=0.0032 Score=61.73 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=22.3
Q ss_pred EcCCcEEEEECCCCCcHHHH-HHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSL-VNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTL-l~~I~Gl~~ 128 (397)
+++| ++.|.||+||||||| +.+++...+
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~ 54 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMR 54 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHH
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6889 899999999999999 455555443
No 252
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.79 E-value=0.00043 Score=75.67 Aligned_cols=31 Identities=26% Similarity=0.491 Sum_probs=28.9
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|.+++|+.+.|+||||||||||+++|++.+.
T Consensus 233 l~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 233 IGVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp SCCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred cCCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 4688999999999999999999999999876
No 253
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.76 E-value=0.00068 Score=59.93 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998665
No 254
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.73 E-value=0.00083 Score=58.85 Aligned_cols=27 Identities=33% Similarity=0.576 Sum_probs=22.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+..+.|+|++||||||+.+.|+..+.
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~ 30 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTK 30 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 366899999999999999999986543
No 255
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.71 E-value=0.00097 Score=59.17 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+|-+++|.|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998765
No 256
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.68 E-value=0.00085 Score=58.70 Aligned_cols=27 Identities=26% Similarity=0.388 Sum_probs=23.3
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++.++.|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998543
No 257
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.67 E-value=0.00082 Score=60.62 Aligned_cols=23 Identities=30% Similarity=0.769 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHHcccC
Q 015952 106 LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.|+||||||||||++.|..-.+
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 67999999999999999876543
No 258
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.66 E-value=0.00093 Score=59.13 Aligned_cols=24 Identities=25% Similarity=0.331 Sum_probs=21.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
..+++|+|++||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 457999999999999999999875
No 259
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.65 E-value=0.0008 Score=64.48 Aligned_cols=30 Identities=27% Similarity=0.545 Sum_probs=26.2
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++++..+.|.||+|||||||+++|++...
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 346788899999999999999999998654
No 260
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.64 E-value=0.001 Score=57.60 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~G 125 (397)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4789999999999999999987
No 261
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.64 E-value=0.0008 Score=66.76 Aligned_cols=38 Identities=13% Similarity=0.114 Sum_probs=32.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECce
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSS 144 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~ 144 (397)
.+..++|+||||||||||++.+.+... +..+.|.+-+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-----~~~~~~~~~D~ 71 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-----MQGSRVIIIDP 71 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-----TTTCCEEEEES
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-----HCCCEEEEEeC
Confidence 566899999999999999999999888 77788877554
No 262
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.63 E-value=0.00088 Score=62.80 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|+||+|||||||.+.|++-+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 689999999999999999987544
No 263
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.62 E-value=0.0011 Score=58.37 Aligned_cols=28 Identities=29% Similarity=0.566 Sum_probs=24.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++.+++|+|++||||||+.+.|+..+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4678999999999999999999986543
No 264
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.60 E-value=0.0012 Score=58.77 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998765
No 265
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.58 E-value=0.0012 Score=59.02 Aligned_cols=28 Identities=21% Similarity=0.279 Sum_probs=24.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+|.+++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999987543
No 266
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.58 E-value=0.0011 Score=57.86 Aligned_cols=24 Identities=38% Similarity=0.665 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|+|++||||||+.+.|+..+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 588999999999999999987654
No 267
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=96.55 E-value=0.0011 Score=62.51 Aligned_cols=24 Identities=21% Similarity=0.502 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|||||||+|.+.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999999754
No 268
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.53 E-value=0.0013 Score=58.70 Aligned_cols=29 Identities=17% Similarity=0.307 Sum_probs=24.8
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|-+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35688999999999999999999986543
No 269
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.52 E-value=0.0018 Score=64.47 Aligned_cols=42 Identities=19% Similarity=0.214 Sum_probs=30.6
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC--CC----CCCCcccEEEECce
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE--ND----KFASERAQVTYNSS 144 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~--~~----~~~p~~G~I~i~G~ 144 (397)
|-.++|||.+|+|||||+|.|.|-.. .+ -..|+.|.+.+.+.
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~ 49 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDP 49 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCH
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCc
Confidence 34689999999999999999998321 00 01277888888763
No 270
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=96.52 E-value=0.0019 Score=54.55 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++++|+.|+|||||++.+.+-..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~~ 30 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGIF 30 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 478999999999999999987543
No 271
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.50 E-value=0.0013 Score=57.54 Aligned_cols=24 Identities=21% Similarity=0.535 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.|.|++||||||+.+.|+.-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
No 272
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=96.49 E-value=0.0015 Score=57.19 Aligned_cols=25 Identities=24% Similarity=0.539 Sum_probs=21.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHccc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 5689999999999999999987543
No 273
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.48 E-value=0.0012 Score=63.12 Aligned_cols=27 Identities=41% Similarity=0.464 Sum_probs=23.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
..+.++.|.|||||||||+.+.|+.-+
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999999998644
No 274
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=96.48 E-value=0.0027 Score=53.53 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 275
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=96.47 E-value=0.0028 Score=53.22 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47899999999999999998744
No 276
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=96.45 E-value=0.0025 Score=53.94 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++++|+.|+|||||++.+.+-..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~~ 31 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDSF 31 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 478999999999999999988653
No 277
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=96.45 E-value=0.0012 Score=58.81 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++|+|++|||||||++.|.+.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 4789999999999999999998876
No 278
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.45 E-value=0.0025 Score=53.81 Aligned_cols=24 Identities=38% Similarity=0.411 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++++|+.|+|||||++.+.+-..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~~ 28 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSNDF 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999987543
No 279
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.44 E-value=0.0014 Score=62.03 Aligned_cols=31 Identities=26% Similarity=0.558 Sum_probs=26.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEE
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQV 139 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I 139 (397)
..+.|+||+|+||||++++|++... +..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~-----~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLF-----DTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHH-----SCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHc-----CCCcce
Confidence 5799999999999999999999987 665544
No 280
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.44 E-value=0.0015 Score=57.06 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|||||||++.+.+-..
T Consensus 50 ~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 50 SIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 689999999999999999998653
No 281
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.43 E-value=0.019 Score=57.04 Aligned_cols=28 Identities=25% Similarity=0.465 Sum_probs=24.4
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
-+++|+++.|.||.|||||||+..++.-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4789999999999999999999776643
No 282
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.43 E-value=0.0016 Score=57.34 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|.|+.||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988764
No 283
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.43 E-value=0.0027 Score=61.95 Aligned_cols=32 Identities=28% Similarity=0.301 Sum_probs=29.0
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
+++..+++ .|.-++|+|+||+|||||...+.+
T Consensus 135 ~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 135 LHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 67788888 688999999999999999999877
No 284
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=96.43 E-value=0.0046 Score=52.77 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998753
No 285
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=96.42 E-value=0.0033 Score=53.14 Aligned_cols=23 Identities=43% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998743
No 286
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=96.42 E-value=0.0032 Score=52.83 Aligned_cols=23 Identities=26% Similarity=0.447 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999987643
No 287
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.42 E-value=0.0044 Score=55.47 Aligned_cols=23 Identities=39% Similarity=0.726 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|++|+|||||++.+.+-.
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999887644
No 288
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=96.39 E-value=0.0023 Score=54.81 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 48999999999999999998754
No 289
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=96.38 E-value=0.0017 Score=55.33 Aligned_cols=24 Identities=33% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+-..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~~ 29 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQE 29 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCccHHHHHHHHhcCCC
Confidence 489999999999999999987543
No 290
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.37 E-value=0.0017 Score=57.65 Aligned_cols=24 Identities=33% Similarity=0.569 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|.|++||||||+.+.|+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 799999999999999999988654
No 291
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=96.36 E-value=0.0027 Score=53.78 Aligned_cols=23 Identities=35% Similarity=0.439 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998654
No 292
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=96.35 E-value=0.0056 Score=53.42 Aligned_cols=24 Identities=33% Similarity=0.588 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+-..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~~ 50 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNEF 50 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 479999999999999999988543
No 293
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=96.35 E-value=0.0017 Score=54.48 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998754
No 294
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=96.34 E-value=0.0052 Score=54.34 Aligned_cols=24 Identities=50% Similarity=0.598 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDTY 33 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 489999999999999999987543
No 295
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=96.33 E-value=0.0015 Score=55.38 Aligned_cols=24 Identities=38% Similarity=0.587 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.|-..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCccc
Confidence 478999999999999999987544
No 296
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=96.33 E-value=0.0016 Score=54.55 Aligned_cols=24 Identities=29% Similarity=0.477 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++++|+.|||||||++.+.+-..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~~ 28 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNHF 28 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 478999999999999999987543
No 297
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.32 E-value=0.0014 Score=56.99 Aligned_cols=27 Identities=19% Similarity=0.437 Sum_probs=19.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.++.|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~ 30 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP 30 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999986554
No 298
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=96.31 E-value=0.0027 Score=54.25 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|||||||++.+.+-.
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998754
No 299
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=96.31 E-value=0.002 Score=54.71 Aligned_cols=24 Identities=29% Similarity=0.558 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+...
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHhccC
Confidence 378999999999999999987544
No 300
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=96.30 E-value=0.0026 Score=54.46 Aligned_cols=27 Identities=19% Similarity=0.386 Sum_probs=22.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
++.-.++|+|++|||||||++.+.+-.
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 345578999999999999999998743
No 301
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.30 E-value=0.002 Score=56.72 Aligned_cols=29 Identities=24% Similarity=0.530 Sum_probs=24.5
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.+.+++|+|+.||||||+.+.|+..+.
T Consensus 9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 9 LRKCKIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp HHHSCEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34577999999999999999999987543
No 302
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=96.28 E-value=0.0028 Score=54.14 Aligned_cols=24 Identities=46% Similarity=0.591 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+-..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~~ 34 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNTF 34 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999987543
No 303
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=96.26 E-value=0.0032 Score=54.33 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998744
No 304
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=96.26 E-value=0.0044 Score=53.44 Aligned_cols=23 Identities=30% Similarity=0.577 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998754
No 305
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=96.25 E-value=0.0033 Score=54.53 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~~ 32 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDTF 32 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 489999999999999999998644
No 306
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=96.25 E-value=0.0073 Score=51.72 Aligned_cols=24 Identities=50% Similarity=0.580 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~~ 37 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQF 37 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 489999999999999999987543
No 307
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=96.24 E-value=0.0019 Score=54.68 Aligned_cols=23 Identities=43% Similarity=0.608 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998754
No 308
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.24 E-value=0.0026 Score=57.55 Aligned_cols=27 Identities=30% Similarity=0.679 Sum_probs=23.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|-++.|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 29 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH 29 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999987554
No 309
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=96.24 E-value=0.0023 Score=60.87 Aligned_cols=23 Identities=43% Similarity=0.523 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|++|||||||+|.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999964
No 310
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=96.23 E-value=0.0039 Score=52.59 Aligned_cols=23 Identities=48% Similarity=0.566 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998643
No 311
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=96.20 E-value=0.002 Score=55.94 Aligned_cols=23 Identities=30% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 68999999999999999998864
No 312
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.20 E-value=0.0019 Score=56.43 Aligned_cols=23 Identities=26% Similarity=0.619 Sum_probs=20.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
-.++|+|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 313
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.19 E-value=0.002 Score=56.24 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=21.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHccc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
--.++|+|+.|+|||||++.+.+-.
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998753
No 314
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.19 E-value=0.0026 Score=55.63 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 315
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=96.18 E-value=0.0025 Score=58.05 Aligned_cols=27 Identities=30% Similarity=0.616 Sum_probs=22.3
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++.+++|+|+.||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998644
No 316
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=96.17 E-value=0.005 Score=52.86 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhhCC
Confidence 48999999999999999998744
No 317
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.17 E-value=0.0024 Score=59.45 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|.+|+|||||+|.|.|-..
T Consensus 23 ~I~lvG~~g~GKSSlin~l~~~~~ 46 (247)
T 3lxw_A 23 RLILVGRTGAGKSATGNSILGQRR 46 (247)
T ss_dssp EEEEESSTTSSHHHHHHHHHTSCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 589999999999999999998654
No 318
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.16 E-value=0.0023 Score=55.14 Aligned_cols=25 Identities=12% Similarity=0.569 Sum_probs=21.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 3689999999999999999987543
No 319
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=96.16 E-value=0.003 Score=56.18 Aligned_cols=27 Identities=19% Similarity=0.540 Sum_probs=22.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.+..+++|.|++||||||+.+.|+.-+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 345689999999999999999998544
No 320
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=96.16 E-value=0.0026 Score=57.09 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+||+||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999996543
No 321
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.16 E-value=0.0032 Score=56.10 Aligned_cols=27 Identities=26% Similarity=0.596 Sum_probs=23.1
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+-+++|+|+.||||||+.+.|+..+.
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l~ 45 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKLG 45 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999986543
No 322
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=96.16 E-value=0.0053 Score=53.87 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998644
No 323
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=96.14 E-value=0.0018 Score=59.42 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=36.3
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCcccEEEECceeCcEEEEecCCCCCCCCCCccHHHHHh
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERAQVTYNSSVGDGTYFLQEYTIPRGSNSFSLYDTRS 171 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G~I~i~G~~~~ig~v~Q~~~l~~~~~~ltv~eni~ 171 (397)
+.+|+.+++.||+||||||++.++..-.. ...|. ...++++++.|.... ..++.+++.
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~-----~~~~~------~~~~~~l~~~p~~~l---a~q~~~~~~ 130 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDF-----IQNDR------AAECNIVVTQPRRIS---AVSVAERVA 130 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHH-----HHTTC------GGGCEEEEEESSHHH---HHHHHHHHH
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcch-----hhcCC------CCceEEEEeccchHH---HHHHHHHHH
Confidence 35689999999999999998887754322 11121 234567777765322 235555553
No 324
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.14 E-value=0.0023 Score=57.97 Aligned_cols=27 Identities=19% Similarity=0.398 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.++.|+|++||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999986544
No 325
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=96.13 E-value=0.0023 Score=55.43 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 37899999999999999998754
No 326
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=96.13 E-value=0.0071 Score=52.85 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~~ 46 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKRF 46 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 488999999999999999987543
No 327
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=96.11 E-value=0.0027 Score=53.86 Aligned_cols=23 Identities=26% Similarity=0.621 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHcc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
-.++++|++|+|||||++.+.+-
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999753
No 328
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.10 E-value=0.018 Score=67.38 Aligned_cols=30 Identities=23% Similarity=0.443 Sum_probs=27.3
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-+++|+++.|.||+|+|||||+..++....
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa 757 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 757 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHH
Confidence 389999999999999999999999988665
No 329
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=96.10 E-value=0.0039 Score=53.13 Aligned_cols=23 Identities=30% Similarity=0.512 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 330
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=96.10 E-value=0.003 Score=54.05 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 47899999999999999998743
No 331
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=96.10 E-value=0.0032 Score=54.03 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|.|++||||||+.+.|+..+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987443
No 332
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=96.09 E-value=0.0095 Score=51.86 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998643
No 333
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=96.09 E-value=0.0028 Score=55.24 Aligned_cols=26 Identities=27% Similarity=0.517 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+++|.|+.||||||+.+.|+..+.
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45899999999999999999976443
No 334
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=96.09 E-value=0.005 Score=53.54 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++++|++|+|||||++.+.+-..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~~ 32 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDCF 32 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999999999999999987543
No 335
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=96.08 E-value=0.0028 Score=53.46 Aligned_cols=21 Identities=19% Similarity=0.561 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHHcc
Q 015952 106 LLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 106 vaLvGpnGsGKSTLl~~I~Gl 126 (397)
++++|++|+|||||++.+.+-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999753
No 336
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.06 E-value=0.0035 Score=54.09 Aligned_cols=25 Identities=44% Similarity=0.635 Sum_probs=22.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++++|.|+.||||||+.+.|+..+.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg 32 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALK 32 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC
Confidence 6899999999999999999987443
No 337
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=96.05 E-value=0.0047 Score=53.86 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~~ 47 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDSF 47 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 489999999999999999987543
No 338
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=96.04 E-value=0.0033 Score=56.57 Aligned_cols=24 Identities=33% Similarity=0.609 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+||+||||||+.+.|+.-+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~ 25 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG 25 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999975443
No 339
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.04 E-value=0.0097 Score=52.54 Aligned_cols=24 Identities=42% Similarity=0.574 Sum_probs=21.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHccc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
-.++|+|+.|+|||||++.+.+-.
T Consensus 21 ~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 21 MKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 368999999999999999998644
No 340
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.04 E-value=0.0036 Score=56.22 Aligned_cols=27 Identities=22% Similarity=0.401 Sum_probs=24.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 577899999999999999999998765
No 341
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=96.04 E-value=0.0063 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.447 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~~~ 43 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQKIF 43 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCC
Confidence 478999999999999999986543
No 342
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.03 E-value=0.0018 Score=55.87 Aligned_cols=24 Identities=29% Similarity=0.668 Sum_probs=20.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
+.-.++|+|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 344689999999999999999864
No 343
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.02 E-value=0.0036 Score=55.55 Aligned_cols=25 Identities=32% Similarity=0.480 Sum_probs=22.5
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.|.||+|+|||||++.|+....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4678999999999999999998776
No 344
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=96.02 E-value=0.0031 Score=54.07 Aligned_cols=24 Identities=29% Similarity=0.490 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+-..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCCC
Confidence 489999999999999999987443
No 345
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=96.02 E-value=0.0048 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.520 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 489999999999999999987543
No 346
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=96.02 E-value=0.0049 Score=54.06 Aligned_cols=23 Identities=39% Similarity=0.589 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998754
No 347
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=96.01 E-value=0.0032 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 48999999999999999998754
No 348
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=96.01 E-value=0.0058 Score=53.30 Aligned_cols=23 Identities=43% Similarity=0.560 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCcHHHHHHHHHcCC
Confidence 58999999999999999998743
No 349
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.01 E-value=0.0029 Score=55.35 Aligned_cols=25 Identities=36% Similarity=0.624 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg 27 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG 27 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999987543
No 350
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=96.01 E-value=0.0035 Score=54.39 Aligned_cols=24 Identities=25% Similarity=0.360 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.|-..
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~ 39 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVP 39 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhhcc
Confidence 478999999999999999998765
No 351
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=96.00 E-value=0.0056 Score=53.30 Aligned_cols=24 Identities=46% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~~ 41 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDTY 41 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 489999999999999999987543
No 352
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=95.99 E-value=0.0056 Score=53.88 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKKF 33 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCCC
Confidence 589999999999999999987543
No 353
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=95.99 E-value=0.0032 Score=54.77 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58899999999999999998753
No 354
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.99 E-value=0.0058 Score=53.97 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-.++|+|+.|+|||||++.+.+-..
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCCC
Confidence 3589999999999999999988654
No 355
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=95.98 E-value=0.0035 Score=60.41 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+++|+|.+|+|||||+|.+.|--
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 69999999999999999999853
No 356
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=95.96 E-value=0.0036 Score=60.33 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+++|+|+.|+|||||+|.+.|--
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 89999999999999999999854
No 357
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.96 E-value=0.0028 Score=59.76 Aligned_cols=23 Identities=35% Similarity=0.602 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|++|+|||||+|.|.|-.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999987754
No 358
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=95.95 E-value=0.0058 Score=53.78 Aligned_cols=24 Identities=29% Similarity=0.405 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~~ 33 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDSF 33 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 479999999999999999987543
No 359
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.93 E-value=0.0038 Score=57.98 Aligned_cols=25 Identities=28% Similarity=0.372 Sum_probs=21.8
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-+++|.|++||||||+.+.|+..+.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4799999999999999999987443
No 360
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=95.93 E-value=0.0068 Score=52.11 Aligned_cols=21 Identities=29% Similarity=0.493 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHHc
Q 015952 105 SLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~G 125 (397)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 578999999999999999984
No 361
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=95.91 E-value=0.0073 Score=52.85 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+-..
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999987543
No 362
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=95.91 E-value=0.0065 Score=52.70 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~~ 40 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDTF 40 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999987543
No 363
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.89 E-value=0.0037 Score=55.85 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+-..
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDSV 37 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999988543
No 364
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.89 E-value=0.0045 Score=57.97 Aligned_cols=26 Identities=27% Similarity=0.556 Sum_probs=23.0
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
++.++.|+|++||||||+.+.|+..+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46689999999999999999998754
No 365
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=95.88 E-value=0.0052 Score=52.65 Aligned_cols=28 Identities=25% Similarity=0.471 Sum_probs=23.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+..+.|.||.|+|||||++.++..+.
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999988764
No 366
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.87 E-value=0.003 Score=56.03 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|++|+|||||++.+.|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999997654
No 367
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.86 E-value=0.0044 Score=55.87 Aligned_cols=24 Identities=21% Similarity=0.355 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.-+++|+|+.||||||+.+.++..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999999865
No 368
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=95.86 E-value=0.004 Score=53.99 Aligned_cols=35 Identities=17% Similarity=0.378 Sum_probs=25.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccCCCCCCCccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFENDKFASERA 137 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~~~~~~p~~G 137 (397)
+.-.++++|+.|+|||||++.+.+-. .....|+-|
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~ 51 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLG 51 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCc
Confidence 34468999999999999999998754 222335544
No 369
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.85 E-value=0.0049 Score=57.15 Aligned_cols=26 Identities=23% Similarity=0.414 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
++-+++|.||+||||||+.+.|+.-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997543
No 370
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.85 E-value=0.004 Score=58.49 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|||||||+|.+.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
No 371
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.83 E-value=0.0024 Score=61.29 Aligned_cols=27 Identities=22% Similarity=0.530 Sum_probs=20.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++-+++|.||+||||||+.+.|...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456899999999999999999987544
No 372
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.83 E-value=0.0026 Score=56.94 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHccc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
-.++|+|++|+|||||+|.+.|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998864
No 373
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=95.83 E-value=0.0042 Score=57.56 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHccc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
-.++|+|++|||||||++.|.|-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999854
No 374
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=95.83 E-value=0.0042 Score=53.39 Aligned_cols=22 Identities=18% Similarity=0.342 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++++|++|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999753
No 375
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=95.81 E-value=0.007 Score=52.88 Aligned_cols=24 Identities=38% Similarity=0.409 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~~~ 47 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASGQF 47 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 589999999999999999986443
No 376
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=95.79 E-value=0.0077 Score=53.92 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+-..
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 589999999999999999988543
No 377
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=95.77 E-value=0.0045 Score=54.77 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|||++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
No 378
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.77 E-value=0.0051 Score=56.11 Aligned_cols=23 Identities=35% Similarity=0.736 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+++|.|++||||||+.+.|+-.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997644
No 379
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.76 E-value=0.0096 Score=52.23 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999998753
No 380
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=95.75 E-value=0.0099 Score=52.01 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHHhCC
Confidence 58999999999999999887643
No 381
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=95.73 E-value=0.0047 Score=58.73 Aligned_cols=23 Identities=43% Similarity=0.536 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 382
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.72 E-value=0.0044 Score=61.62 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|||++|+|||||+|.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999999863
No 383
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.72 E-value=0.0048 Score=55.32 Aligned_cols=25 Identities=28% Similarity=0.504 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-.++|+|+.|||||||++.+++-..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999987644
No 384
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=95.72 E-value=0.0045 Score=54.38 Aligned_cols=23 Identities=35% Similarity=0.717 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998744
No 385
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.71 E-value=0.0048 Score=53.88 Aligned_cols=34 Identities=15% Similarity=0.384 Sum_probs=24.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccCCC-CCCCccc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFEND-KFASERA 137 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~~~-~~~p~~G 137 (397)
-.++|+|++|+|||||++.+.+-.... .+.|+-|
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~ 52 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVG 52 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCCC----CCCCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCcccccccccc
Confidence 368999999999999999998754422 2235545
No 386
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.70 E-value=0.0045 Score=54.17 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48899999999999999998754
No 387
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=95.70 E-value=0.0055 Score=57.50 Aligned_cols=24 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|||||||+|.+.|-..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~~ 30 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTKQ 30 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC
Confidence 489999999999999999998543
No 388
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.67 E-value=0.0052 Score=58.08 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|..|||||||+|.+.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
No 389
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.67 E-value=0.0038 Score=54.52 Aligned_cols=24 Identities=25% Similarity=0.524 Sum_probs=21.4
Q ss_pred cEEEEECCCCCcHHHHHHHHHccc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
=.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998765
No 390
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.67 E-value=0.0051 Score=53.53 Aligned_cols=24 Identities=17% Similarity=0.468 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.-.++|+|+.|+|||||++.+.+-
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999863
No 391
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=95.66 E-value=0.0043 Score=53.22 Aligned_cols=23 Identities=39% Similarity=0.447 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|++|+|||||++.+.+-.
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47899999999999999998743
No 392
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.66 E-value=0.012 Score=59.80 Aligned_cols=35 Identities=14% Similarity=0.263 Sum_probs=28.4
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
|+.+.--+++|+++.|.|++|+|||||+--++.-.
T Consensus 187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence 55554458999999999999999999987776543
No 393
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=95.66 E-value=0.0055 Score=55.51 Aligned_cols=23 Identities=35% Similarity=0.615 Sum_probs=20.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
-.++|+|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999874
No 394
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=95.65 E-value=0.0051 Score=54.47 Aligned_cols=23 Identities=35% Similarity=0.611 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 48999999999999999998643
No 395
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=95.65 E-value=0.0068 Score=51.96 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
-.++++|+.|+|||||++.+.+-
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 396
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.63 E-value=0.0055 Score=54.05 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHccc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998754
No 397
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=95.61 E-value=0.0047 Score=53.56 Aligned_cols=22 Identities=18% Similarity=0.516 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++++|+.|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5799999999999999999873
No 398
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=95.60 E-value=0.0062 Score=54.30 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48999999999999999998743
No 399
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.60 E-value=0.0061 Score=55.20 Aligned_cols=27 Identities=41% Similarity=0.634 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|-++.|+|+.||||||+.+.|+.-+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~ 30 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG 30 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999976543
No 400
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=95.60 E-value=0.0057 Score=58.18 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|||||||+|.|.|..
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 69999999999999999999864
No 401
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=95.58 E-value=0.016 Score=52.19 Aligned_cols=24 Identities=42% Similarity=0.616 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~~ 38 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNEF 38 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 489999999999999999987543
No 402
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.58 E-value=0.0066 Score=56.76 Aligned_cols=28 Identities=29% Similarity=0.547 Sum_probs=24.0
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++.-+.|.||+|+|||||++.++....
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 4455689999999999999999998765
No 403
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.57 E-value=0.0042 Score=59.59 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+..+.|.||+|+|||||++.|++...
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHH
Confidence 34688999999999999999999776
No 404
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.55 E-value=0.0067 Score=52.02 Aligned_cols=27 Identities=22% Similarity=0.464 Sum_probs=23.2
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+..+.|.||.|+|||||++.++..+.
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 355678999999999999999988765
No 405
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=95.55 E-value=0.0066 Score=53.36 Aligned_cols=25 Identities=28% Similarity=0.304 Sum_probs=20.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHccc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.-.++|+|+.|+|||||++.+.+-.
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998643
No 406
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=95.53 E-value=0.009 Score=52.83 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|+.|+|||||++.+.+-..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~ 50 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKDQF 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCcC
Confidence 489999999999999999987443
No 407
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.53 E-value=0.0043 Score=63.67 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=29.7
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.+ +.+-+|+..+|+||||+|||||++.|++-..
T Consensus 142 ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 142 VDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 4445 5677899999999999999999999987655
No 408
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=95.53 E-value=0.0057 Score=54.38 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++++|+.|+|||||++.+.+-..
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~~ 50 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDEF 50 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCC
Confidence 589999999999999999987543
No 409
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.52 E-value=0.0064 Score=54.76 Aligned_cols=23 Identities=22% Similarity=0.453 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999997643
No 410
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.52 E-value=0.0077 Score=55.14 Aligned_cols=28 Identities=25% Similarity=0.380 Sum_probs=24.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-+|-+++|.|++||||||+++.|...+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999988776
No 411
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=95.51 E-value=0.007 Score=57.25 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=20.2
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~G 125 (397)
.++.|+|++||||||+.+.|+.
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999999999986
No 412
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.48 E-value=0.0088 Score=54.72 Aligned_cols=28 Identities=36% Similarity=0.704 Sum_probs=23.7
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.++.|+|+.||||||+.+.|+.-+.
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456899999999999999999986544
No 413
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=95.47 E-value=0.0066 Score=54.45 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|++|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
No 414
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=95.45 E-value=0.0062 Score=54.73 Aligned_cols=26 Identities=27% Similarity=0.572 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+-+++|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g 28 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS 28 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999987543
No 415
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=95.45 E-value=0.0067 Score=53.43 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++|+|++|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 588999999999999999988554
No 416
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=95.44 E-value=0.0077 Score=56.88 Aligned_cols=25 Identities=24% Similarity=0.547 Sum_probs=22.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-.++++|.+|+|||||+|.+.|-..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccc
Confidence 5799999999999999999998665
No 417
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=95.44 E-value=0.0044 Score=53.44 Aligned_cols=22 Identities=45% Similarity=0.694 Sum_probs=9.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998754
No 418
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=95.44 E-value=0.0075 Score=53.61 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|++|+|||||++.+.+-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998644
No 419
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.41 E-value=0.011 Score=51.59 Aligned_cols=23 Identities=17% Similarity=0.297 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|+.|+|||||++.+.+-.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~~ 42 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYANDA 42 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998653
No 420
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=95.40 E-value=0.0068 Score=56.22 Aligned_cols=28 Identities=14% Similarity=0.327 Sum_probs=22.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+|-++.|.|++||||||+++.|...+.
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999987765
No 421
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.38 E-value=0.0075 Score=56.53 Aligned_cols=23 Identities=43% Similarity=0.566 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++++|++|+|||||+|.+.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999854
No 422
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=95.37 E-value=0.0084 Score=60.28 Aligned_cols=26 Identities=23% Similarity=0.456 Sum_probs=22.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.+..++.|+|++||||||+.+.|+.-
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 45789999999999999999998753
No 423
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=95.35 E-value=0.0088 Score=55.78 Aligned_cols=27 Identities=19% Similarity=0.466 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|.+++|.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999988776
No 424
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=95.35 E-value=0.0066 Score=53.47 Aligned_cols=24 Identities=21% Similarity=0.570 Sum_probs=20.7
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
+.-.++|+|+.|+|||||++.+.+
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CccEEEEECCCCCCHHHHHHHHHh
Confidence 344689999999999999999965
No 425
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=95.34 E-value=0.0093 Score=54.75 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=22.2
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..-+.|.||+|+|||||++.++....
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999998654
No 426
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.33 E-value=0.0081 Score=56.10 Aligned_cols=23 Identities=39% Similarity=0.547 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|++|+|||||+|.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
No 427
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=95.32 E-value=0.0075 Score=56.70 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|..|+|||||+|.+.|-.
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
No 428
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=95.30 E-value=0.0097 Score=54.56 Aligned_cols=27 Identities=22% Similarity=0.502 Sum_probs=24.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|.++.+-|++||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999988776
No 429
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.29 E-value=0.011 Score=52.28 Aligned_cols=24 Identities=29% Similarity=0.577 Sum_probs=21.9
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|.||+|+|||||++.++..+.
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 789999999999999999987665
No 430
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.27 E-value=0.0083 Score=53.89 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=21.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-.++|+|++|+|||||++.+++-..
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3688999999999999999887543
No 431
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.25 E-value=0.0092 Score=58.78 Aligned_cols=25 Identities=32% Similarity=0.652 Sum_probs=22.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999987654
No 432
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=95.23 E-value=0.015 Score=52.27 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~~ 51 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKDC 51 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999997643
No 433
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.23 E-value=0.0027 Score=59.04 Aligned_cols=28 Identities=36% Similarity=0.723 Sum_probs=22.9
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.| +.|.||+|+|||||++.|+....
T Consensus 42 ~~~~~--vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 42 KIPKG--VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred CCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence 33445 77999999999999999998654
No 434
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=95.22 E-value=0.0097 Score=54.09 Aligned_cols=22 Identities=45% Similarity=0.727 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|||++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999874
No 435
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=95.21 E-value=0.011 Score=54.40 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=25.9
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+|.++.+-|++||||||+++.|...+.
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~ 30 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQ 30 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3689999999999999999999999887
No 436
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.21 E-value=0.012 Score=57.92 Aligned_cols=28 Identities=36% Similarity=0.564 Sum_probs=24.2
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++.++.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999997654
No 437
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=95.19 E-value=0.0042 Score=55.49 Aligned_cols=23 Identities=35% Similarity=0.569 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999988643
No 438
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=95.18 E-value=0.0082 Score=60.89 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|.+|+|||||+|.|.|-.
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 79999999999999999998843
No 439
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=95.17 E-value=0.017 Score=51.30 Aligned_cols=23 Identities=17% Similarity=0.319 Sum_probs=20.0
Q ss_pred cEEEEECCCCCcHHHHHHHHHcc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
=.++++|+.|+|||||++.+.+-
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 36889999999999999998753
No 440
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.17 E-value=0.011 Score=54.38 Aligned_cols=27 Identities=26% Similarity=0.412 Sum_probs=23.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|.+++|-|+.||||||+++.|+..+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999988764
No 441
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.15 E-value=0.0033 Score=68.70 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=29.9
Q ss_pred eeEEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 96 isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++.+.++..++|+||+|||||||.++|++...
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~ 536 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC
Confidence 366778999999999999999999999999876
No 442
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=95.14 E-value=0.0042 Score=54.50 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=4.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|++|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998775
No 443
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=95.14 E-value=0.012 Score=54.38 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+|.++++.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5689999999999999999999988776
No 444
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=95.10 E-value=0.011 Score=56.84 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=24.7
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
-+++|+++.|.||+|||||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999999988875
No 445
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=95.10 E-value=0.0095 Score=52.83 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 48999999999999999997643
No 446
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.09 E-value=0.012 Score=57.42 Aligned_cols=26 Identities=19% Similarity=0.404 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.+++|+||+|||||||.+.|+.-+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~ 28 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN 28 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence 45789999999999999999986543
No 447
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=95.09 E-value=0.0063 Score=52.91 Aligned_cols=23 Identities=26% Similarity=0.564 Sum_probs=20.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
.-.++++|+.|+|||||++.+.+
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 34689999999999999999854
No 448
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.07 E-value=0.13 Score=61.07 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=25.6
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|.++.|.||+|+|||||+..++.-..
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLqia~~~a 408 (2050)
T 3cmu_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 89999999999999999999888766444
No 449
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=95.06 E-value=0.015 Score=51.48 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|+.|+|||||++.+.+-.
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
No 450
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=95.06 E-value=0.015 Score=53.28 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=27.2
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
++..-+++ .|..++|+||+|||||||...++.-
T Consensus 25 lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 25 MHGVLVDI-YGLGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTT
T ss_pred eeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 55566666 4788999999999999999998753
No 451
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.97 E-value=0.013 Score=57.36 Aligned_cols=25 Identities=24% Similarity=0.634 Sum_probs=22.1
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999987554
No 452
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.94 E-value=0.0043 Score=63.03 Aligned_cols=25 Identities=28% Similarity=0.666 Sum_probs=23.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++++|++|+||||+++.|++.+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999887
No 453
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.93 E-value=0.016 Score=52.44 Aligned_cols=25 Identities=32% Similarity=0.686 Sum_probs=22.4
Q ss_pred EEcCCcEEEEECCCCCcHHHHHHHH
Q 015952 99 DVPKTTSLLLIGPKGSGKSSLVNRI 123 (397)
Q Consensus 99 ~I~~Ge~vaLvGpnGsGKSTLl~~I 123 (397)
-+++|+++.|.|++|+|||||+.-+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 4799999999999999999997654
No 454
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.92 E-value=0.0092 Score=55.64 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.5
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.++-+++|.|+.||||||+.+.|+..+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5788999999999999999999987664
No 455
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.88 E-value=0.022 Score=51.11 Aligned_cols=32 Identities=19% Similarity=0.197 Sum_probs=25.6
Q ss_pred ceeeeEEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 93 MTLSDYDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 93 L~~isl~I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
++..-+++. |.-+.|.|+||+|||||.-.+..
T Consensus 7 lHas~v~v~-G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 7 WHANFLVID-KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EESEEEEET-TEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHH
Confidence 455666654 88899999999999999987754
No 456
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.82 E-value=0.017 Score=53.18 Aligned_cols=31 Identities=23% Similarity=0.529 Sum_probs=25.6
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
-..++..++.|+||.||||+|..+.|+--+.
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3446777899999999999999999986544
No 457
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.68 E-value=0.018 Score=48.74 Aligned_cols=28 Identities=14% Similarity=0.262 Sum_probs=23.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.-+.|.||+|+|||++.+.|.....
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~ 49 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGR 49 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSST
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCC
Confidence 3455689999999999999999988764
No 458
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=94.64 E-value=0.016 Score=58.97 Aligned_cols=27 Identities=41% Similarity=0.786 Sum_probs=24.9
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.+++++|++|+||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 467999999999999999999998887
No 459
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.60 E-value=0.13 Score=60.22 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=25.2
Q ss_pred EcCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 100 VPKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 100 I~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+++|.++.|.||+|||||||+-.++.-..
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~ 408 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 88999999999999999999887765443
No 460
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=94.60 E-value=0.018 Score=50.48 Aligned_cols=24 Identities=29% Similarity=0.546 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|.||.|+|||||++.++..+.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~ 63 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLF 63 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHh
Confidence 388999999999999999987653
No 461
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.54 E-value=0.016 Score=55.45 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=26.4
Q ss_pred eeeeEEEcCC--cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 94 TLSDYDVPKT--TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 94 ~~isl~I~~G--e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.+.-.+..| ..+.|.||+|+||||+++.+++.+.
T Consensus 47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3343344444 3489999999999999999998764
No 462
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=94.53 E-value=0.02 Score=54.63 Aligned_cols=26 Identities=38% Similarity=0.525 Sum_probs=22.7
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+-.++++|.+|+|||||+|.|.|-..
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~ 145 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNI 145 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCce
Confidence 34789999999999999999998653
No 463
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.51 E-value=0.022 Score=55.49 Aligned_cols=26 Identities=31% Similarity=0.694 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+++|+||+|||||||.+.|+.-+.
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCC
Confidence 45789999999999999999987554
No 464
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.46 E-value=0.016 Score=55.91 Aligned_cols=28 Identities=29% Similarity=0.519 Sum_probs=24.3
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+..+.|.||+|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998775
No 465
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=94.38 E-value=0.013 Score=52.54 Aligned_cols=23 Identities=39% Similarity=0.839 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHH-HHccc
Q 015952 105 SLLLIGPKGSGKSSLVNR-ISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~-I~Gl~ 127 (397)
.++|+|+.|+|||||++. +.|-.
T Consensus 17 ki~v~G~~~~GKSsli~~~~~~~~ 40 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLTGEF 40 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCC
Confidence 478999999999999998 65543
No 466
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.33 E-value=0.024 Score=53.43 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++..+.|.||+|+|||||.+.++..+.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 355789999999999999999988765
No 467
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.31 E-value=0.027 Score=54.49 Aligned_cols=27 Identities=19% Similarity=0.490 Sum_probs=24.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+|..+.|.||+|+|||||++.++..+.
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 456899999999999999999998776
No 468
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=93.32 E-value=0.0078 Score=53.18 Aligned_cols=22 Identities=18% Similarity=0.366 Sum_probs=19.3
Q ss_pred cEEEEECCCCCcHHHHHHHHHc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~G 125 (397)
=.++++|+.|+|||||++.+.+
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 3589999999999999988864
No 469
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=94.21 E-value=0.026 Score=51.36 Aligned_cols=24 Identities=33% Similarity=0.652 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++.|+||.||||+|..+.|+.-+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC
Confidence 467999999999999999986554
No 470
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=94.20 E-value=0.02 Score=57.64 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|||++|+|||||+|.+.|-.
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~ 27 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGER 27 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
No 471
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=94.18 E-value=0.028 Score=51.02 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=23.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
|.+++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999988765
No 472
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=94.17 E-value=0.025 Score=54.30 Aligned_cols=24 Identities=46% Similarity=0.587 Sum_probs=20.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
+-.++|+|++|+|||||++.+.+-
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998765
No 473
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=94.16 E-value=0.026 Score=55.33 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=23.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.-+++|+|+.|+|||||++.+++.+.
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999988765
No 474
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=94.09 E-value=0.028 Score=54.35 Aligned_cols=26 Identities=35% Similarity=0.566 Sum_probs=22.6
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+..-+.|.||.|+|||||++.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 34568899999999999999999865
No 475
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=94.04 E-value=0.024 Score=56.08 Aligned_cols=25 Identities=28% Similarity=0.505 Sum_probs=22.8
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
++..++++|.+|+|||||+|.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667999999999999999999986
No 476
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.01 E-value=0.027 Score=56.69 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=21.7
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+++|+||+|||||||.+.|+.-+.
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred cEEEEECcchhhHHHHHHHHHHHCC
Confidence 4789999999999999999986554
No 477
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.99 E-value=0.0049 Score=54.40 Aligned_cols=22 Identities=50% Similarity=0.712 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHHcc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
.++|+|++|+|||||++.+.+-
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~ 56 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADD 56 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999988763
No 478
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=93.97 E-value=0.025 Score=55.21 Aligned_cols=26 Identities=38% Similarity=0.865 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.-+.|.||+|+||||+.++|+..+.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 44588999999999999999998764
No 479
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=93.95 E-value=0.028 Score=52.36 Aligned_cols=24 Identities=42% Similarity=0.627 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|.||+|+|||||++.++....
T Consensus 66 ~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 66 SVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHhC
Confidence 578999999999999999988643
No 480
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=93.95 E-value=0.019 Score=58.47 Aligned_cols=33 Identities=24% Similarity=0.449 Sum_probs=26.3
Q ss_pred eeEEEcCCcE--EEEECCCCCcHHHHHHHHHcccC
Q 015952 96 SDYDVPKTTS--LLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 96 isl~I~~Ge~--vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.-.+..|.+ +.|.||+|+|||||+++|+....
T Consensus 41 L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 41 LPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp HHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence 3334444554 88999999999999999999876
No 481
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=93.93 E-value=0.033 Score=49.48 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=21.1
Q ss_pred CCcEEEEECCCCCcHHHHH-HHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLV-NRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl-~~I~Gl~ 127 (397)
+|.++.+.||.||||||++ +++..+.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4889999999999999997 5555443
No 482
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.89 E-value=0.019 Score=56.14 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|..|+|||||+|.|.|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
No 483
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=93.89 E-value=0.03 Score=52.39 Aligned_cols=26 Identities=35% Similarity=0.788 Sum_probs=22.5
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.-+.|.||+|+|||||++.++..+.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999998765
No 484
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=93.85 E-value=0.027 Score=56.45 Aligned_cols=23 Identities=22% Similarity=0.316 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHHccc
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
.++|+|.+++|||||+|.+.|-.
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999999854
No 485
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.79 E-value=0.032 Score=53.13 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=21.6
Q ss_pred cEEEEECCCCCcHHHHHHHHHcccC
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..+.|.||.|+|||+|.+.|+.-+.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l~ 61 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKMG 61 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4577889999999999999998654
No 486
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=93.78 E-value=0.037 Score=53.21 Aligned_cols=26 Identities=38% Similarity=0.662 Sum_probs=22.3
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
..-+.|.||+|+|||||++.|+....
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 34588999999999999999988654
No 487
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.66 E-value=0.039 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.431 Sum_probs=21.1
Q ss_pred CcEEEEECCCCCcHHHHHHHHHc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
|..+.|.||.|+|||||++.+..
T Consensus 31 ~~~v~i~G~~G~GKT~Ll~~~~~ 53 (350)
T 2qen_A 31 YPLTLLLGIRRVGKSSLLRAFLN 53 (350)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHHHHHH
Confidence 57999999999999999999864
No 488
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=93.65 E-value=0.041 Score=53.81 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=23.8
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+..-+.|.||+|+|||||++.|+....
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456789999999999999999987654
No 489
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.65 E-value=0.026 Score=55.80 Aligned_cols=26 Identities=31% Similarity=0.567 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
++..++++|.+|+|||||+|.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 56789999999999999999999864
No 490
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.64 E-value=0.038 Score=53.48 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.8
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+..+.|.||.|+|||||++.++....
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~~ 70 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEIE 70 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999998763
No 491
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=93.61 E-value=0.03 Score=58.47 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.9
Q ss_pred cEEEEECCCCCcHHHHHHHHHccc
Q 015952 104 TSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 104 e~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
-.++|+|..|+|||||+|.|.|-.
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999854
No 492
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.51 E-value=0.037 Score=54.18 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=24.9
Q ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHHc
Q 015952 98 YDVPKTTSLLLIGPKGSGKSSLVNRISK 125 (397)
Q Consensus 98 l~I~~Ge~vaLvGpnGsGKSTLl~~I~G 125 (397)
-.+++|..+.|.||.|||||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3678889999999999999999999874
No 493
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.50 E-value=0.044 Score=52.74 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.0
Q ss_pred CcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.-+.|.||+|+|||+|+++|+....
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 67899999999999999999987543
No 494
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=93.49 E-value=0.027 Score=57.60 Aligned_cols=26 Identities=31% Similarity=0.365 Sum_probs=22.3
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHccc
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
+|-.++|+|+.|+|||||+|.+.|-.
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34459999999999999999999853
No 495
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=93.48 E-value=0.038 Score=54.18 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=24.8
Q ss_pred eeEEEcCCcEEEEECCCCCcHHHHHHHHHcc
Q 015952 96 SDYDVPKTTSLLLIGPKGSGKSSLVNRISKV 126 (397)
Q Consensus 96 isl~I~~Ge~vaLvGpnGsGKSTLl~~I~Gl 126 (397)
+.++++----++|+|.++||||||++.+++-
T Consensus 151 ~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 151 IVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred HhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 4555554445899999999999999999875
No 496
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=93.44 E-value=0.038 Score=52.94 Aligned_cols=24 Identities=42% Similarity=0.659 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHHcccC
Q 015952 105 SLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 105 ~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.|.||+|+|||||++.|+....
T Consensus 57 ~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 57 HILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECcCCCCHHHHHHHHHHHhC
Confidence 478999999999999999987654
No 497
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=93.41 E-value=0.058 Score=49.89 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=23.4
Q ss_pred CCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 102 KTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 102 ~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
.+.-+.|.||+|+|||+|++.|.....
T Consensus 28 ~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 345688999999999999999998765
No 498
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=93.33 E-value=0.033 Score=58.74 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.4
Q ss_pred CcEEEEECCCCCcHHHHHHHHHccc
Q 015952 103 TTSLLLIGPKGSGKSSLVNRISKVF 127 (397)
Q Consensus 103 Ge~vaLvGpnGsGKSTLl~~I~Gl~ 127 (397)
--.++|+|+.|+|||||+|.|.|-.
T Consensus 38 ~~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 38 MVVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred CcEEEEECCCCCCHHHHHHhHcCCC
Confidence 3578999999999999999999964
No 499
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.31 E-value=0.04 Score=57.07 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=25.6
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
+.|-.+.|+|.+||||||+-+.|+.-+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 5678899999999999999999998876
No 500
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=93.28 E-value=0.046 Score=57.39 Aligned_cols=28 Identities=18% Similarity=0.369 Sum_probs=24.3
Q ss_pred cCCcEEEEECCCCCcHHHHHHHHHcccC
Q 015952 101 PKTTSLLLIGPKGSGKSSLVNRISKVFE 128 (397)
Q Consensus 101 ~~Ge~vaLvGpnGsGKSTLl~~I~Gl~~ 128 (397)
++|-++.|.|++||||||+.+.|+..+.
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~ 421 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLN 421 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhc
Confidence 3567899999999999999999988664
Done!