BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015953
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RE4|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin.
pdb|3RE4|B Chain B, Crystal Structure Of Archaeoglobus Fulgidus Rio1 Kinase
Bound To Toyocamycin
Length = 258
Score = 150 bits (378), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/209 (42%), Positives = 124/209 (59%), Gaps = 8/209 (3%)
Query: 3 LFKMLNRGVFHDINGCISTGKEANVYHATKS-DGQ--ELAVKVYKTSVLVFKDRDRYVQG 59
L+K+ +G + G ISTGKEANV++A DG+ +AVK+Y+ F D Y+ G
Sbjct: 39 LYKLSAKGYITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYG 98
Query: 60 DYRFRYGYCKHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPYLLRLHVLVMEFIGKAGWA 119
D RF + +P++ V W EKE RNL R K AG+ P PY +VL+MEFIG+
Sbjct: 99 DERF--DMRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYMKNVLLMEFIGEDELP 156
Query: 120 APRLKDAALSLDKLR-EG-YVEMIIAMRTLYQRCKLVHGDLSEYNILYFEGHLYIIDVSQ 177
AP L + L +L EG + +++ ++ LYQ +LVH DLSEYNI+Y + +Y ID+ Q
Sbjct: 157 APTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIMYID-KVYFIDMGQ 215
Query: 178 AVDLDHPHALDFLREDCVHVSDFFKKHGV 206
AV L HP A +L D ++ FF K+GV
Sbjct: 216 AVTLRHPMAESYLERDVRNIIRFFSKYGV 244
>pdb|1ZP9|A Chain A, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|B Chain B, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|C Chain C, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZP9|D Chain D, Crystal Structure Of Full-Legnth A.Fulgidus Rio1 Serine
Kinase Bound To Atp And Mn2+ Ions.
pdb|1ZTF|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
pdb|1ZTH|A Chain A, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|B Chain B, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|C Chain C, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
pdb|1ZTH|D Chain D, Crystal Structure Of A.Fulgidus Rio1 Serine Protein Kinase
Bound To Adp And Manganese Ion
Length = 258
Score = 145 bits (366), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 87/210 (41%), Positives = 120/210 (57%), Gaps = 8/210 (3%)
Query: 2 VLFKMLNRGVFHDINGCISTGKEANVYHATKS-DGQELA--VKVYKTSVLVFKDRDRYVQ 58
L+K+ +G G ISTGKEANV++A DG+ +A VK+Y+ F D Y+
Sbjct: 38 TLYKLSAKGYITAXGGVISTGKEANVFYADGVFDGKPVAXAVKIYRIETSEFDKXDEYLY 97
Query: 59 GDYRFRYGYCKHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPYLLRLHVLVMEFIGKAGW 118
GD RF + +P++ V W EKE RNL R K AG+ P PY +VL+ EFIG+
Sbjct: 98 GDERF--DXRRISPKEKVFIWTEKEFRNLERAKEAGVSVPQPYTYXKNVLLXEFIGEDEL 155
Query: 119 AAPRLKDAALSLDKLR-EG-YVEMIIAMRTLYQRCKLVHGDLSEYNILYFEGHLYIIDVS 176
AP L + L +L EG + +++ ++ LYQ +LVH DLSEYNI Y + +Y ID
Sbjct: 156 PAPTLVELGRELKELDVEGIFNDVVENVKRLYQEAELVHADLSEYNIXYID-KVYFIDXG 214
Query: 177 QAVDLDHPHALDFLREDCVHVSDFFKKHGV 206
QAV L HP A +L D ++ FF K+GV
Sbjct: 215 QAVTLRHPXAESYLERDVRNIIRFFSKYGV 244
>pdb|1TQI|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase
pdb|1TQM|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Amppnp
pdb|1ZAO|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Atp And Manganese Ions
pdb|1ZAR|A Chain A, Crystal Structure Of A.Fulgidus Rio2 Kinase Complexed With
Adp And Manganese Ions
Length = 282
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 87/202 (43%), Gaps = 20/202 (9%)
Query: 3 LFKMLNRGVFHDINGCISTGKEANVYHATKSDGQELAVKVYKTSVLVFKD-RDRYVQGDY 61
L +++ G I + GKE+ V++ E VK +K FK +++ GD
Sbjct: 82 LHRLVRSGKVDAIGKLMGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDL 141
Query: 62 RFRYGYCKHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPYLLRLHVLVMEFIGKAGWAAP 121
F + A E R L +L+ G+ P Y + ++ME I
Sbjct: 142 HFSVLAIRS---------ARNEFRALQKLQ--GLAVPKVYAWEGNAVLMELIDAKELYRV 190
Query: 122 RLKDAALSLDKLREGYVEMIIAMRTLYQRCKLVHGDLSEYNILYFEGHLYIIDVSQAVDL 181
R+++ LD + E + Y R +VHGDLS+YN+L E ++IID Q+V++
Sbjct: 191 RVENPDEVLDMILE-------EVAKFYHRG-IVHGDLSQYNVLVSEEGIWIIDFPQSVEV 242
Query: 182 DHPHALDFLREDCVHVSDFFKK 203
+ L D ++ +F +
Sbjct: 243 GEEGWREILERDVRNIITYFSR 264
>pdb|1TQP|A Chain A, Crystal Structure Of A. Fulgidus Rio2 Serine Protein
Kinase Bound To Atp
Length = 282
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 20/202 (9%)
Query: 3 LFKMLNRGVFHDINGCISTGKEANVYHATKSDGQELAVKVYKTSVLVFKD-RDRYVQGDY 61
L +++ G I GKE+ V++ E VK +K FK +++ GD
Sbjct: 82 LHRLVRSGKVDAIGKLXGEGKESAVFNCYSEKFGECVVKFHKVGHTSFKKVKEKRDYGDL 141
Query: 62 RFRYGYCKHNPRKMVKTWAEKEMRNLMRLKAAGIRCPTPYLLRLHVLVMEFIGKAGWAAP 121
F + A E R L +L+ G+ P Y + ++ E I
Sbjct: 142 HFSVLAIRS---------ARNEFRALQKLQ--GLAVPKVYAWEGNAVLXELIDAKELYRV 190
Query: 122 RLKDAALSLDKLREGYVEMIIAMRTLYQRCKLVHGDLSEYNILYFEGHLYIIDVSQAVDL 181
R+++ LD + E + Y R +VHGDLS+YN+L E ++IID Q+V++
Sbjct: 191 RVENPDEVLDXILE-------EVAKFYHRG-IVHGDLSQYNVLVSEEGIWIIDFPQSVEV 242
Query: 182 DHPHALDFLREDCVHVSDFFKK 203
+ L D ++ +F +
Sbjct: 243 GEEGWREILERDVRNIITYFSR 264
>pdb|4GYG|A Chain A, Crystal Structure Of The Rio2 Kinase From Chaetomium
Thermophilum
Length = 397
Score = 47.4 bits (111), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/202 (22%), Positives = 83/202 (41%), Gaps = 22/202 (10%)
Query: 13 HDINGCISTGKEANVYHATKSDGQELAVKVYKTSVLVFKDRDRYVQGDYRFRYGYCKHNP 72
+ + I GKE+++ G++ +K+++ + F R V+ + + +
Sbjct: 97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISF----RTVKANRDYLRNRSTGSW 152
Query: 73 RKMVKTWAEKEMRNLMRLKAAGIRCPTPYLLRLHVLVMEFIGKAGWAAPRLKDAALSLDK 132
+ + A KE + L G P P H +VM + A P + + S+
Sbjct: 153 MYLSRLAAIKEFAFMKALYEEGFPVPEPIAQSRHTIVMSLVD----ALPMRQVS--SVPD 206
Query: 133 LREGYVEMIIAMRTLYQRCKLVHGDLSEYNILYFEGH-----------LYIIDVSQAVDL 181
Y ++I + L + L+HGD +E+NIL E IID Q V +
Sbjct: 207 PASLYADLIALILRLAKHG-LIHGDFNEFNILIREEKDAEDPSSITLTPIIIDFPQMVSM 265
Query: 182 DHPHALDFLREDCVHVSDFFKK 203
DHP+A + D + FF++
Sbjct: 266 DHPNAEMYFDRDVQCIKRFFER 287
>pdb|4GYI|A Chain A, Crystal Structure Of The Rio2
Kinase-AdpMG2+-Phosphoaspartate Complex From Chaetomium
Thermophilum
Length = 397
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 82/202 (40%), Gaps = 22/202 (10%)
Query: 13 HDINGCISTGKEANVYHATKSDGQELAVKVYKTSVLVFKDRDRYVQGDYRFRYGYCKHNP 72
+ + I GKE+++ G++ +K+++ + F R V+ + + +
Sbjct: 97 YSVGSRIGVGKESDIMIVADEKGKQKVLKIHRLGRISF----RTVKANRDYLRNRSTGSW 152
Query: 73 RKMVKTWAEKEMRNLMRLKAAGIRCPTPYLLRLHVLVMEFIGKAGWAAPRLKDAALSLDK 132
+ + A KE + L G P P H +VM + A P + + S+
Sbjct: 153 MYLSRLAAIKEFAFMKALYEEGFPVPEPIAQSRHTIVMSLVD----ALPMRQVS--SVPD 206
Query: 133 LREGYVEMIIAMRTLYQRCKLVHGDLSEYNILYFEGH-----------LYIIDVSQAVDL 181
Y ++I + L + L+HGD +E+NIL E II Q V +
Sbjct: 207 PASLYADLIALILRLAKHG-LIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVSM 265
Query: 182 DHPHALDFLREDCVHVSDFFKK 203
DHP+A + D + FF++
Sbjct: 266 DHPNAEMYFDRDVQCIKRFFER 287
>pdb|2QLU|A Chain A, Crystal Structure Of Activin Receptor Type Ii Kinase
Domain From Human
Length = 314
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 64/139 (46%), Gaps = 24/139 (17%)
Query: 113 IGKAGWAAPRLKDAALSLDK---LREGYVEMIIAMRTLYQRCKLVHGDLSEYNILYFEGH 169
+G + AP + + A++ + LR M + + L RCK G + EY + + E
Sbjct: 186 VGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELVSRCKAADGPVDEYMLPFEE-- 243
Query: 170 LYIIDVSQAVDLDHPHALDFLREDCVH------VSDFFKKH-GVA--VMTIRELFDFVVD 220
++ Q HP +L+ L+E VH + D + KH G+A +TI E +D +
Sbjct: 244 ----EIGQ-----HP-SLEELQEVVVHKKMRPTIKDHWLKHPGLAQLCVTIEECWDHDAE 293
Query: 221 PTIADDSVDSYLEEVQQKI 239
++ V+ + +++ +
Sbjct: 294 ARLSAGCVEERVSLIRRSV 312
>pdb|1Q7G|A Chain A, Homoserine Dehydrogenase In Complex With Suicide Inhibitor
Complex Nad-5-Hydroxy-4-Oxonorvaline
pdb|1Q7G|B Chain B, Homoserine Dehydrogenase In Complex With Suicide Inhibitor
Complex Nad-5-Hydroxy-4-Oxonorvaline
Length = 359
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 234 EVQQKILARGDMSA-EDEIADSVFVQSYIPKTLEQVKNAEE 273
+V +K+ G +S E E S VQS IPK LE VK+A+E
Sbjct: 219 DVARKVTIVGRISGVEVESPTSFPVQSLIPKPLESVKSADE 259
>pdb|1EBF|A Chain A, Homoserine Dehydrogenase From S. Cerevisiae Complex With
Nad+
pdb|1EBF|B Chain B, Homoserine Dehydrogenase From S. Cerevisiae Complex With
Nad+
pdb|1EBU|A Chain A, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1EBU|B Chain B, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1EBU|C Chain C, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1EBU|D Chain D, Homoserine Dehydrogenase Complex With Nad Analogue And L-
Homoserine
pdb|1TVE|A Chain A, Homoserine Dehydrogenase In Complex With 4-(4-Hydroxy-3-
Isopropylphenylthio)-2-Isopropylphenol
pdb|1TVE|B Chain B, Homoserine Dehydrogenase In Complex With 4-(4-Hydroxy-3-
Isopropylphenylthio)-2-Isopropylphenol
Length = 358
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 234 EVQQKILARGDMSA-EDEIADSVFVQSYIPKTLEQVKNAEE 273
+V +K+ G +S E E S VQS IPK LE VK+A+E
Sbjct: 218 DVARKVTIVGRISGVEVESPTSFPVQSLIPKPLESVKSADE 258
>pdb|3SQG|B Chain B, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
pdb|3SQG|E Chain E, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
pdb|3SQG|H Chain H, Crystal Structure Of A Methyl-Coenzyme M Reductase
Purified From Black Sea Mats
Length = 433
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 6/89 (6%)
Query: 218 VVDPTIADDSVDSYLEEVQQKILARGDMSAEDEIADSVFVQSYIPKTLEQVKNAEEDVIR 277
+V+ TI +VD L +++K A G ++ + V I +++ A ED++R
Sbjct: 35 IVNLTIRTGAVD--LAGLEKK-FATGAIAGRGMVIRGVNRNLPIVDKAKEIAKAVEDMLR 91
Query: 278 ITSGKDTGDMYYKTITGLKETLSKPSPAR 306
+ SG DT + I G K + +P AR
Sbjct: 92 VESGDDTN---VELIAGGKRMMVQPPTAR 117
>pdb|2PZI|A Chain A, Crystal Structure Of Protein Kinase Pkng From
Mycobacterium Tuberculosis In Complex With
Tetrahydrobenzothiophene Ax20017
pdb|2PZI|B Chain B, Crystal Structure Of Protein Kinase Pkng From
Mycobacterium Tuberculosis In Complex With
Tetrahydrobenzothiophene Ax20017
Length = 681
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 3/69 (4%)
Query: 108 LVMEFIGKAGWAAPRLKDAALSLDKLREGYVEMIIAMRTLYQRCKLVHGDLSEYNILYFE 167
+VME++G G + R K L + + +E++ A+ L+ LV+ DL NI+ E
Sbjct: 161 IVMEYVG--GQSLKRSKGQKLPVAEAIAYLLEILPALSYLHS-IGLVYNDLKPENIMLTE 217
Query: 168 GHLYIIDVS 176
L +ID+
Sbjct: 218 EQLKLIDLG 226
>pdb|2QGU|A Chain A, Three-Dimensional Structure Of The Phospholipid-Binding
Protein From Ralstonia Solanacearum Q8xv73_ralsq In
Complex With A Phospholipid At The Resolution 1.53 A.
Northeast Structural Genomics Consortium Target Rsr89
Length = 211
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Query: 220 DPTIADDSVDSYLEEVQQKILARGDMSAEDEIADSVFVQSYIPKTLEQVKNAEED-VIRI 278
DP + ++ + V QKI+ R D +IA F P+ +Q+++ + +IR
Sbjct: 49 DPDLRGGNLQKVFQLVDQKIVPRADFKRTTQIAXGRFWSQATPEQQQQIQDGFKSLLIRT 108
Query: 279 TSG 281
+G
Sbjct: 109 YAG 111
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.137 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,706,731
Number of Sequences: 62578
Number of extensions: 397817
Number of successful extensions: 1166
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1151
Number of HSP's gapped (non-prelim): 18
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)