BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015954
         (397 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1CX8|A Chain A, Crytal Structure Of The Ectodomain Of Human Transferrin
           Receptor
 pdb|1CX8|B Chain B, Crytal Structure Of The Ectodomain Of Human Transferrin
           Receptor
 pdb|1CX8|C Chain C, Crytal Structure Of The Ectodomain Of Human Transferrin
           Receptor
 pdb|1CX8|D Chain D, Crytal Structure Of The Ectodomain Of Human Transferrin
           Receptor
 pdb|1CX8|E Chain E, Crytal Structure Of The Ectodomain Of Human Transferrin
           Receptor
 pdb|1CX8|F Chain F, Crytal Structure Of The Ectodomain Of Human Transferrin
           Receptor
 pdb|1CX8|G Chain G, Crytal Structure Of The Ectodomain Of Human Transferrin
           Receptor
 pdb|1CX8|H Chain H, Crytal Structure Of The Ectodomain Of Human Transferrin
           Receptor
 pdb|1SUV|A Chain A, Structure Of Human Transferrin Receptor-transferrin
           Complex
 pdb|1SUV|B Chain B, Structure Of Human Transferrin Receptor-transferrin
           Complex
 pdb|2NSU|A Chain A, Crystal Structure Of The Ectodomain Of Human Transferrin
           Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
           Parvovirus And Feline Transferrin Receptor Complex
 pdb|2NSU|B Chain B, Crystal Structure Of The Ectodomain Of Human Transferrin
           Receptor Fitted Into A Cryo-Em Reconstruction Of Canine
           Parvovirus And Feline Transferrin Receptor Complex
          Length = 639

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 189 GVPSLVQSRTPPSAITGLPNLPI 211
           G PS   ++ PPS  +GLPN+P+
Sbjct: 191 GFPSFNHTQFPPSRSSGLPNIPV 213


>pdb|1DE4|C Chain C, Hemochromatosis Protein Hfe Complexed With Transferrin
           Receptor
 pdb|1DE4|F Chain F, Hemochromatosis Protein Hfe Complexed With Transferrin
           Receptor
 pdb|1DE4|I Chain I, Hemochromatosis Protein Hfe Complexed With Transferrin
           Receptor
 pdb|3KAS|A Chain A, Machupo Virus Gp1 Bound To Human Transferrin Receptor 1
          Length = 640

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 189 GVPSLVQSRTPPSAITGLPNLPI 211
           G PS   ++ PPS  +GLPN+P+
Sbjct: 192 GFPSFNHTQFPPSRSSGLPNIPV 214


>pdb|3S9L|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
           With Iron In The N-Lobe, Cryocooled 2
 pdb|3S9L|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
           With Iron In The N-Lobe, Cryocooled 2
 pdb|3S9M|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
           With Iron In The N-Lobe, Cryocooled 1
 pdb|3S9M|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
           With Iron In The N-Lobe, Cryocooled 1
 pdb|3S9N|A Chain A, Complex Between Transferrin Receptor 1 And Transferrin
           With Iron In The N-Lobe, Room Temperature
 pdb|3S9N|B Chain B, Complex Between Transferrin Receptor 1 And Transferrin
           With Iron In The N-Lobe, Room Temperature
          Length = 654

 Score = 30.4 bits (67), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 189 GVPSLVQSRTPPSAITGLPNLPI 211
           G PS   ++ PPS  +GLPN+P+
Sbjct: 206 GFPSFNHTQFPPSRSSGLPNIPV 228


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.137    0.408 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,488,988
Number of Sequences: 62578
Number of extensions: 320541
Number of successful extensions: 667
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 664
Number of HSP's gapped (non-prelim): 3
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)