Query 015954
Match_columns 397
No_of_seqs 155 out of 1400
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 02:27:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015954.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015954hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0619 CbiQ ABC-type cobalt t 100.0 7E-35 1.5E-39 279.8 30.5 246 106-393 2-249 (252)
2 PF02361 CbiQ: Cobalt transpor 100.0 1.1E-33 2.3E-38 264.1 28.6 221 114-363 1-224 (224)
3 PRK15485 cobalt transport prot 100.0 9.6E-32 2.1E-36 254.4 27.4 213 107-357 4-222 (225)
4 TIGR02454 CbiQ_TIGR cobalt ABC 100.0 5.4E-29 1.2E-33 229.9 24.9 195 121-352 1-198 (198)
5 PRK10519 hypothetical protein; 44.2 57 0.0012 29.2 5.6 61 229-290 11-73 (151)
6 COG1114 BrnQ Branched-chain am 33.0 6E+02 0.013 26.7 12.0 118 218-356 101-218 (431)
7 COG4858 Uncharacterized membra 14.9 1.6E+02 0.0035 27.5 3.0 34 47-80 7-40 (226)
8 PF07670 Gate: Nucleoside reco 14.6 96 0.0021 25.2 1.4 28 261-289 22-50 (109)
9 PF12046 DUF3529: Protein of u 13.0 5.7E+02 0.012 23.5 6.0 53 338-390 42-97 (173)
10 KOG4494 Cell surface ATP dipho 12.8 1.2E+02 0.0026 30.2 1.7 14 6-20 286-299 (352)
No 1
>COG0619 CbiQ ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-35 Score=279.76 Aligned_cols=246 Identities=24% Similarity=0.332 Sum_probs=196.8
Q ss_pred cccccccCCCCcccccCHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH--HHHhhccHHHHHHHHHHHHHHHHHHHHHH
Q 015954 106 PIYQFIASPSTFLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTAL--LSIWILPKQVWMDQLGRVSLLSGVLFIML 183 (397)
Q Consensus 106 ~~~~y~~~~~S~lhrldPr~Kll~~l~~~i~~~~~~~~~~l~ll~~l~l--l~~~~lp~~~~~~~l~~l~~l~~~lfi~l 183 (397)
.+++|.|+ +|++|++|||+|++..+++++..+..+++...++...+.+ ...++.|.+.+...+++......++++..
T Consensus 2 ~l~~y~~~-~s~~h~l~pr~kll~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ki~~~~l~~~~~~~~~~~~~~~~~~ 80 (252)
T COG0619 2 ILERYVPG-NSLLHRLDPRTKLLLLFLLIILVFLLNDLVLLLIILLLTLLLVVLAKIPLKFLLLLLGFLLLGLLLIAFTN 80 (252)
T ss_pred cccccCcC-CChhHhhChHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 46789999 9999999999999999999999999998887666665544 23467777666655554432222111110
Q ss_pred hhccCCCcccccccCCCCcccCCCCCccccCCcceEEEEeccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 015954 184 GLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLA 263 (397)
Q Consensus 184 ~~~~~g~p~~~q~~~p~~~~~gl~~l~~~~~g~~~vl~~~G~~~it~eGl~~al~~~lR~~~il~~~~ll~~TT~p~~l~ 263 (397)
+ +. .|+....+.+|.. +.+++..|+.++.|++.++.++.++..||++.|+.
T Consensus 81 -----~-------~~---------------~~~~~~~~~~~~~--~~~~l~~~~~i~~R~~~~~~~~~ll~~TT~~~el~ 131 (252)
T COG0619 81 -----G-------FS---------------LGPAVGLFGLGPV--TIGSLVLGLLIALRVLLILLAALLLTLTTPPLELT 131 (252)
T ss_pred -----c-------CC---------------CCCcceeeecccc--hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 0 00 1111234455543 33338999999999999999999999999999999
Q ss_pred HHHHHhhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 015954 264 FALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAE 343 (397)
Q Consensus 264 ~aL~~ll~PLr~lgvP~~~ial~l~LalRfIP~L~~e~~~I~~AqraRG~~~~~~~~~~r~~~~~~li~pL~~~sl~rAe 343 (397)
++++ +++.|..++++++++++||||++.||.++|++||++||.+.++++ +++|.+..+++|++++++|+||
T Consensus 132 ~~l~-------~l~~P~~~~~~~~~la~R~Ip~l~~e~~~i~~Aq~~Rg~~~~~~~--~~~~~~~~li~pL~i~sl~rae 202 (252)
T COG0619 132 SALE-------RLLVPLVELALLLSLALRFIPLLLEELQRIRRAQRARGLDLSSGK--RRIKSLGALIIPLLIRSLRRAE 202 (252)
T ss_pred HHHH-------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccccc--hhHHHHHHHHHHHHHHHHHHHH
Confidence 9996 667773169999999999999999999999999999999987665 8999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCCCeeeecccCCCCChhHHHHHHHHHHHHHHHHHHH
Q 015954 344 QISQAMIVRGFRGDSSTHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSD 393 (397)
Q Consensus 344 ~la~AMeaRGf~~~~~rT~~~~l~~~~~~~~D~v~l~i~i~l~~~~i~~~ 393 (397)
+++.|||+|||+++++||+++. .+++.+|++++++++++.+..++.+
T Consensus 203 ~la~AMe~RGy~~~~~rt~~~~---~~~~~~D~~~~~~~~~~~~l~~~~~ 249 (252)
T COG0619 203 ELAIAMEARGFRGNKRRTSYRE---LKFKRRDYLFLALLLLLIALLILLT 249 (252)
T ss_pred HHHHHHHHcCCCCCCCCceeeE---eccccccHHHHHHHHHHHHHHHHHh
Confidence 9999999999999888888764 8999999999999888887665544
No 2
>PF02361 CbiQ: Cobalt transport protein; InterPro: IPR003339 Cobalt transport proteins are most often found in cobalamin (vitamin B12) biosynthesis operons. Salmonella typhimurium synthesizes cobalamin (vitamin B12) de novo under anaerobic conditions. Not all Salmonella and Pseudomonas cobalamin synthetic genes have apparent homologs in the other species suggesting that the cobalamin biosynthetic pathways differ between the two organisms [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process
Probab=100.00 E-value=1.1e-33 Score=264.08 Aligned_cols=221 Identities=27% Similarity=0.379 Sum_probs=173.6
Q ss_pred CCCcccccCHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH--HHHHhhccHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 015954 114 PSTFLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTA--LLSIWILPKQVWMDQLGRVSLLSGVLFIMLGLGSDGVP 191 (397)
Q Consensus 114 ~~S~lhrldPr~Kll~~l~~~i~~~~~~~~~~l~ll~~l~--ll~~~~lp~~~~~~~l~~l~~l~~~lfi~l~~~~~g~p 191 (397)
|||++|++||++|+++.+++++.++..+++....++..+. .......+.+.+++.....+.+.+..++...+. .
T Consensus 1 ~~s~l~~l~p~~kl~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~- 76 (224)
T PF02361_consen 1 RNSFLHRLDPRTKLIFLILLSVIVFLTNNPVFLALILALVLLILLIARLPKRFKRIWLRLLWLLFILGFIILLFG---F- 76 (224)
T ss_pred CCCcccccCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---h-
Confidence 5899999999999999999999999999988665544433 223344453334433332222222222222110 0
Q ss_pred ccccccCCCCcccCCCCCccccCCcceEEEEecc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 015954 192 SLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGP-LQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFM 270 (397)
Q Consensus 192 ~~~q~~~p~~~~~gl~~l~~~~~g~~~vl~~~G~-~~it~eGl~~al~~~lR~~~il~~~~ll~~TT~p~~l~~aL~~ll 270 (397)
.|... .. +...++.|. +.++.||+.+|+.+++|+++++.++.++..||+++|+..+++
T Consensus 77 --~~~~~--------------~~--~~~~~~~~~~~~i~~~g~~~~~~~~lr~~~~~~~~~~~~~tt~~~~l~~~l~--- 135 (224)
T PF02361_consen 77 --YQLFT--------------FP--GPFVFSIGGSFSITQEGLIYAALLALRILAILLASLLFILTTSPSDLISALR--- 135 (224)
T ss_pred --hhccc--------------CC--CceeeeccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH---
Confidence 00000 11 134444444 789999999999999999999999999999999999999995
Q ss_pred ccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015954 271 LPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMI 350 (397)
Q Consensus 271 ~PLr~lgvP~~~ial~l~LalRfIP~L~~e~~~I~~AqraRG~~~~~~~~~~r~~~~~~li~pL~~~sl~rAe~la~AMe 350 (397)
++++|.+++++++++++||||.+.||++++++||++||.+.++++.+++++.+..+++|++.+++++|||+++|||
T Consensus 136 ----~l~~P~~~~~~~i~l~~r~ip~l~~~~~~i~~A~~~Rg~~~~~~~~~~~~~~~~~~~~pll~~al~~a~~la~Am~ 211 (224)
T PF02361_consen 136 ----KLRLPYPKIALMISLTLRFIPLLLEEFKRIREAQRLRGVGIGRGGIRNRLRSLGPLLVPLLIRALRRAEELAEAME 211 (224)
T ss_pred ----HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7889976899999999999999999999999999999999877889999999999999999999999999999999
Q ss_pred HcCCCCCCCCeee
Q 015954 351 VRGFRGDSSTHKI 363 (397)
Q Consensus 351 aRGf~~~~~rT~~ 363 (397)
+|||+++++||+|
T Consensus 212 ~RGf~~~~~Rt~y 224 (224)
T PF02361_consen 212 ARGFGGGKKRTSY 224 (224)
T ss_pred HCCCCCCCCCCCC
Confidence 9999999899864
No 3
>PRK15485 cobalt transport protein CbiQ; Provisional
Probab=100.00 E-value=9.6e-32 Score=254.38 Aligned_cols=213 Identities=16% Similarity=0.189 Sum_probs=165.2
Q ss_pred ccccccCCCCcccccCHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH--HHHHhhccHHHHHHHHHHHHHHHHHHHHHHh
Q 015954 107 IYQFIASPSTFLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTA--LLSIWILPKQVWMDQLGRVSLLSGVLFIMLG 184 (397)
Q Consensus 107 ~~~y~~~~~S~lhrldPr~Kll~~l~~~i~~~~~~~~~~l~ll~~l~--ll~~~~lp~~~~~~~l~~l~~l~~~lfi~l~ 184 (397)
+++|... |+++| +|||+|+++.+.++++.+..+++..+.+...+. .+..+++|.+.+.+.+.....+.++.++...
T Consensus 4 ~d~~a~~-~~l~~-ldPr~Kl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~ip~~~~lk~l~~~~~f~i~~~~~~~ 81 (225)
T PRK15485 4 IDKLSYQ-SRWIH-VAPQRKFLLYLAMMILAFTLPPLGQAIELLIIAGLTCWLLRISLWRYLRWLAIPFGFLLVGLLTIL 81 (225)
T ss_pred HHHHHhh-CCCcc-CCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555 89999 999999999999999888777776555444333 3335688987776644322111111111111
Q ss_pred hccCCCcccccccCCCCcccCCCCCccccCCcceEEE--Eecc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 015954 185 LGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIM--KLGP--LQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPE 260 (397)
Q Consensus 185 ~~~~g~p~~~q~~~p~~~~~gl~~l~~~~~g~~~vl~--~~G~--~~it~eGl~~al~~~lR~~~il~~~~ll~~TT~p~ 260 (397)
+... . .+| +.++ .+|+ +.+|+||+..|..+.+|.+.++.++.++..||+++
T Consensus 82 ~~~~---------~--------------~~~--~~~~~~~~g~~~l~it~~gl~~a~~~~~R~~~~~~~~~~l~~TT~~~ 136 (225)
T PRK15485 82 FSIS---------R--------------DPQ--SLLAGISIGPYWIGISRAGVVTANQTFWRSLAALAATLWFVLNLPFP 136 (225)
T ss_pred hhcC---------C--------------CCc--cceeeeecCceeEEecHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence 1000 0 011 2232 4563 78999999999999999999999999999999999
Q ss_pred HHHHHHHHhhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 015954 261 QLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFG 340 (397)
Q Consensus 261 ~l~~aL~~ll~PLr~lgvP~~~ial~l~LalRfIP~L~~e~~~I~~AqraRG~~~~~~~~~~r~~~~~~li~pL~~~sl~ 340 (397)
|+..++ +++|+|+ ++++++.+++||||++.||.+++++||++|.+ .++.++++|.+..+++|+++++++
T Consensus 137 ~l~~~L-------~~l~vP~-~~~~~~~l~~Rfi~~l~~e~~~i~~Aq~~R~~---~~~~~~~~~~~~~l~~~L~~~s~~ 205 (225)
T PRK15485 137 QLIKLL-------KRAHIPR-LLTEQILLTWRFIFILLEEAAAIRRAQSLRFG---YCSLPNGYRSLAMLVGLLFTRVLM 205 (225)
T ss_pred HHHHHH-------HHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHHHHHHHHH
Confidence 999888 5999997 99999999999999999999999999999942 346678999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC
Q 015954 341 HAEQISQAMIVRGFRGD 357 (397)
Q Consensus 341 rAe~la~AMeaRGf~~~ 357 (397)
|||++++|||+|||+|+
T Consensus 206 rae~l~~Am~aRgy~g~ 222 (225)
T PRK15485 206 RYQQMTTTLDIKLYQGD 222 (225)
T ss_pred HHHHHHHHHHhCCCCCc
Confidence 99999999999999985
No 4
>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ. This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.
Probab=99.97 E-value=5.4e-29 Score=229.87 Aligned_cols=195 Identities=27% Similarity=0.344 Sum_probs=159.3
Q ss_pred cCHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH--HHHhhccHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccccC
Q 015954 121 VDARIKLVWLLALVLLPARSHILMRFGLVVFTAL--LSIWILPKQVWMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQSRT 198 (397)
Q Consensus 121 ldPr~Kll~~l~~~i~~~~~~~~~~l~ll~~l~l--l~~~~lp~~~~~~~l~~l~~l~~~lfi~l~~~~~g~p~~~q~~~ 198 (397)
+||++|+++.+.+++..+..+++..+.+...+.+ ...++.|.+.+.+.++.+..+.+++++...+...
T Consensus 1 l~p~~Kl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~~~~~~~~~~~~---------- 70 (198)
T TIGR02454 1 LDPRVKLISALALLVLAVLLPNPIALLILAIFALLLVGLAGIPLRILLKRLAVPIGFLLVGLLLLLFSNG---------- 70 (198)
T ss_pred CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC----------
Confidence 6999999999999999988888875554444332 3346788887777766654444433333222100
Q ss_pred CCCcccCCCCCccccCCcceEEEEecc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccccccC
Q 015954 199 PPSAITGLPNLPISLGGYSYLIMKLGP-LQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIG 277 (397)
Q Consensus 199 p~~~~~gl~~l~~~~~g~~~vl~~~G~-~~it~eGl~~al~~~lR~~~il~~~~ll~~TT~p~~l~~aL~~ll~PLr~lg 277 (397)
.+| ++++.+|+ +.+|.||+.+|..+.+|+++++.++.++..||+++|+.++++ ++|
T Consensus 71 --------------~~g--~~~~~~~~~~~it~~gl~~~~~~~lR~~~~~~~~~~~~~TT~~~~l~~~l~-------~l~ 127 (198)
T TIGR02454 71 --------------TPG--EPLLVLGPLLSITREGLVYALTLALRSLTSLSAVYLLALTTPFPELLSALR-------RLG 127 (198)
T ss_pred --------------CCC--ccHHHhhhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-------HcC
Confidence 112 44555665 899999999999999999999999999999999999999994 899
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 015954 278 VPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVR 352 (397)
Q Consensus 278 vP~~~ial~l~LalRfIP~L~~e~~~I~~AqraRG~~~~~~~~~~r~~~~~~li~pL~~~sl~rAe~la~AMeaR 352 (397)
+|+ ++++++++++||||.+.||+++|++||++|+ + +++..+++|.+.++++|++++++++|||+++|||+|
T Consensus 128 ~P~-~~~~~~~l~~Rfip~l~~e~~~i~~Aq~aR~-~--~~~~~~~~~~~~~l~~~Ll~~sl~ra~~l~~Am~aR 198 (198)
T TIGR02454 128 VPP-LLVEILLLTYRYLFVLLEELRRMLLAQRSRL-G--YRSLMRGWRSLGALAGALFIRSLERAERVYLAMESR 198 (198)
T ss_pred CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 998 9999999999999999999999999999993 3 456779999999999999999999999999999998
No 5
>PRK10519 hypothetical protein; Provisional
Probab=44.24 E-value=57 Score=29.22 Aligned_cols=61 Identities=16% Similarity=0.106 Sum_probs=43.7
Q ss_pred cHHHHHHHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHhhccc-cccCCChHHHHHHHHHH
Q 015954 229 TRKGLSVASTAAC-LTFTIFQSSSLCLATTTPEQLAFALRWFMLPL-TYIGVPVAEIVLTLLLS 290 (397)
Q Consensus 229 t~eGl~~al~~~l-R~~~il~~~~ll~~TT~p~~l~~aL~~ll~PL-r~lgvP~~~ial~l~La 290 (397)
-.||...|..++. +++..+..+.+++.--..+...+.+..+++|+ +.+|+|. +.+..+..+
T Consensus 11 Fv~GakeG~~i~~~~iiP~li~~~v~I~iL~~sG~ld~l~~~l~Pvm~llGLPg-ea~~vll~g 73 (151)
T PRK10519 11 FIDGARKGFTIATTNLLPNVLMAFVIIQALNITGLLDLVGHIFGPVMALFGLPG-EAATVLLAA 73 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhCCCH-HHHHHHHHH
Confidence 3477778888888 57777777777776666666666777777764 4689998 777666555
No 6
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=33.05 E-value=6e+02 Score=26.74 Aligned_cols=118 Identities=16% Similarity=0.188 Sum_probs=64.5
Q ss_pred eEEEEeccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccccccCCChHHHHHHHHHHHHHHHHH
Q 015954 218 YLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLV 297 (397)
Q Consensus 218 ~vl~~~G~~~it~eGl~~al~~~lR~~~il~~~~ll~~TT~p~~l~~aL~~ll~PLr~lgvP~~~ial~l~LalRfIP~L 297 (397)
.+-+..|...+..++ ....+=++.++.++..+..+-+|+++.+-+.+++.|+ .+.....+.++.+-.-
T Consensus 101 ~vsfe~~i~p~~~~~----~~~~l~ifs~ifF~ia~~~sl~psklid~vGk~LTPi--------lLv~l~il~i~~~~~p 168 (431)
T COG1114 101 AVSFEVGISPLLGDS----SLPSLFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPI--------LLVLLLILVIAAIIPP 168 (431)
T ss_pred chhHHHhhhcccCCC----cchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHH--------HHHHHHHHHHHHHhCC
Confidence 455555543333332 2233445666777777888899999999998666654 5666666666654433
Q ss_pred HHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Q 015954 298 FDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRG 356 (397)
Q Consensus 298 ~~e~~~I~~AqraRG~~~~~~~~~~r~~~~~~li~pL~~~sl~rAe~la~AMeaRGf~~ 356 (397)
..+.++-.++.+.- .+. .++.+.+..+-.+. |+--+--+.+|...||.+.
T Consensus 169 ~g~~~~a~~~y~~~--pf~-~GfleGY~TMDaLA------al~FgivIv~alk~~g~~~ 218 (431)
T COG1114 169 AGPISAASGAYQSQ--PFS-KGFLEGYLTMDALA------ALAFGIVIVNALKSKGVTT 218 (431)
T ss_pred CCCcccccHHHHhC--hHH-HHHhcchHHHHHHH------HHHHHHHHHHHHHHhccCc
Confidence 33444333443321 111 13334444333222 3334445567788888776
No 7
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=14.86 E-value=1.6e+02 Score=27.54 Aligned_cols=34 Identities=15% Similarity=0.277 Sum_probs=22.9
Q ss_pred ccccccHHHHHhhcCceEEEeeccccCCCCCCCc
Q 015954 47 LPLSKTQKRILKKNGDFVIRASVRDKNNNNGASN 80 (397)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (397)
+|+..+-..--|||.+|+-.+..|=.++|+...+
T Consensus 7 p~~~~llqeLTkkNqeyvh~vtkqli~~gksdee 40 (226)
T COG4858 7 PPVADLLQELTKKNQEYVHEVTKQLIGDGKSDEE 40 (226)
T ss_pred CchHHHHHHHHHHhHHHHHHHHHHHHhcCCCHHH
Confidence 4555555566678888888888888887554443
No 8
>PF07670 Gate: Nucleoside recognition; InterPro: IPR011642 This region in the nucleoside transporter proteins are responsible for determining nucleoside specificity in the human CNT1 and CNT2 proteins (e.g. O00337 from SWISSPROT) []. In the FeoB proteins (e.g. O25396 from SWISSPROT), which are believed to be Fe2+ transporters, it includes the membrane pore region, so the function of this region is likely to be more general than just nucleoside specificity []. This family may represent the pore and gate, with a wide potential range of specificity. Hence its name - Gate.; GO: 0001882 nucleoside binding; PDB: 3TIJ_A.
Probab=14.63 E-value=96 Score=25.16 Aligned_cols=28 Identities=29% Similarity=0.491 Sum_probs=13.3
Q ss_pred HHHHHHHHhhccc-cccCCChHHHHHHHHH
Q 015954 261 QLAFALRWFMLPL-TYIGVPVAEIVLTLLL 289 (397)
Q Consensus 261 ~l~~aL~~ll~PL-r~lgvP~~~ial~l~L 289 (397)
.+.+-+.+++.|+ +.+|+|. +.+..+..
T Consensus 22 g~l~~i~~~l~P~~~~lgLp~-~~~~~l~~ 50 (109)
T PF07670_consen 22 GLLERISRLLEPLFRPLGLPG-EAAIALIL 50 (109)
T ss_dssp THHHHHHHHHHHHHHHH---H-HHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCCCh-HHHHHHHH
Confidence 4444445555555 5568887 66665443
No 9
>PF12046 DUF3529: Protein of unknown function (DUF3529); InterPro: IPR021919 This family of proteins is functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 176 to 190 amino acids in length.
Probab=13.01 E-value=5.7e+02 Score=23.53 Aligned_cols=53 Identities=17% Similarity=-0.060 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCC---CCeeeecccCCCCChhHHHHHHHHHHHHHHHH
Q 015954 338 IFGHAEQISQAMIVRGFRGDS---STHKIYSFSNSSIGVADFVSLFCLVGVVGAAL 390 (397)
Q Consensus 338 sl~rAe~la~AMeaRGf~~~~---~rT~~~~l~~~~~~~~D~v~l~i~i~l~~~~i 390 (397)
-.+.++++..-++.|||.-.. .+.....--..+.++--.+++.++.++..+|+
T Consensus 42 ~~~~~~~l~~yf~~r~y~v~~~d~~~~~itFeG~V~pS~~lA~fLt~l~~~Gl~cl 97 (173)
T PF12046_consen 42 PDEVLEQLKAYFEQRNYRVAEGDAEGEVITFEGFVAPSWFLAIFLTFLAAIGLACL 97 (173)
T ss_pred HHHHHHHHHHHHHhcCceecccCccccEEEEEEEecCcHhHHHHHHHHHHHHHHHH
Confidence 456789999999999998643 44333332245566666666666666666555
No 10
>KOG4494 consensus Cell surface ATP diphosphohydrolase Apyrase [Nucleotide transport and metabolism]
Probab=12.81 E-value=1.2e+02 Score=30.17 Aligned_cols=14 Identities=64% Similarity=1.106 Sum_probs=12.2
Q ss_pred CCCCCCcceeEeeec
Q 015954 6 SSNPTAGFSLSFQFL 20 (397)
Q Consensus 6 ~~~~~~~~~~~~~~~ 20 (397)
.-|||-||| +|||+
T Consensus 286 ~~npt~GFS-aFqFv 299 (352)
T KOG4494|consen 286 KLNPTHGFS-AFQFV 299 (352)
T ss_pred CcCCCCCce-eeEec
Confidence 469999998 79997
Done!