Query 015954
Match_columns 397
No_of_seqs 155 out of 1400
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 05:24:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015954.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015954hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jh4_B PAIP1, polyadenylate-bi 9.5 1.4E+02 0.0047 17.9 1.4 16 19-34 5-20 (26)
2 3gna_A RAG-1, V(D)J recombinat 9.1 88 0.003 24.0 0.6 27 330-356 62-94 (96)
3 1rh5_C Secbeta; protein transl 8.7 3.6E+02 0.012 18.8 3.6 35 104-139 12-46 (53)
4 2ww9_C Protein transport prote 8.4 2.6E+02 0.0091 21.7 3.1 39 103-142 42-80 (87)
5 2wwb_C SEC61BETA, protein tran 7.4 2.1E+02 0.0072 22.6 2.1 38 103-141 51-88 (96)
6 4g26_A Pentatricopeptide repea 6.6 1.6E+03 0.056 21.8 9.6 18 339-356 156-173 (501)
7 1xrd_A LH-1, light-harvesting 6.1 6.5E+02 0.022 17.5 3.9 15 121-135 8-22 (52)
8 2dly_A FYN-related kinase; BRK 5.5 4.4E+02 0.015 20.7 3.3 46 28-73 2-52 (121)
9 2end_A Endonuclease V; 1.45A { 5.5 4.7E+02 0.016 22.0 3.4 21 337-357 66-86 (138)
10 1abz_A Alpha-T-alpha, ATA; de 5.5 4.8E+02 0.016 16.6 2.6 18 341-358 7-24 (40)
No 1
>1jh4_B PAIP1, polyadenylate-binding protein-interacting protein-1; all-helical domain, protein-peptide complex, RNA binding protein; NMR {Homo sapiens} PDB: 3ntw_B
Probab=9.53 E-value=1.4e+02 Score=17.91 Aligned_cols=16 Identities=31% Similarity=0.195 Sum_probs=13.5
Q ss_pred ecCCCCCcccCCCchh
Q 015954 19 FLSPNPKTTIPSNSTL 34 (397)
Q Consensus 19 ~~~~~~~~~~~~~~~~ 34 (397)
-||+|-..-+||||.+
T Consensus 5 ~LS~~ApeF~Psgys~ 20 (26)
T 1jh4_B 5 KLSVNAPEFYPSGYSS 20 (26)
T ss_dssp CSSCCCSCCCCTTCCC
T ss_pred ccCcCCceeccCcccc
Confidence 3789999999999973
No 2
>3gna_A RAG-1, V(D)J recombination-activating protein 1; DNA recombination, DNA-binding, endonucle hydrolase; 2.40A {Mus musculus} PDB: 3gnb_A
Probab=9.13 E-value=88 Score=24.00 Aligned_cols=27 Identities=19% Similarity=0.156 Sum_probs=15.1
Q ss_pred HHHHHHHHHH------HHHHHHHHHHHHcCCCC
Q 015954 330 YIRRIFKNIF------GHAEQISQAMIVRGFRG 356 (397)
Q Consensus 330 li~pL~~~sl------~rAe~la~AMeaRGf~~ 356 (397)
+...+|.-++ ++|||+..-|+-||++-
T Consensus 62 vCltLfLlalRa~NeHrqAdELeA~mqgrg~gL 94 (96)
T 3gna_A 62 VCLTLFLLALRARNEHRQADELEAIMQGRGSGL 94 (96)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHHccccccchHHHHHHHcCcCCCC
Confidence 3444555555 58999999999999874
No 3
>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C
Probab=8.66 E-value=3.6e+02 Score=18.84 Aligned_cols=35 Identities=11% Similarity=0.142 Sum_probs=19.7
Q ss_pred CCcccccccCCCCcccccCHHHHHHHHHHHHHHHHh
Q 015954 104 ASPIYQFIASPSTFLHSVDARIKLVWLLALVLLPAR 139 (397)
Q Consensus 104 ~~~~~~y~~~~~S~lhrldPr~Kll~~l~~~i~~~~ 139 (397)
+..+=+|.+. ++.=-++||.+=+...+++++....
T Consensus 12 saGLvryy~e-e~~giKi~P~~Vl~~si~~i~~V~~ 46 (53)
T 1rh5_C 12 SAGLIRYMDE-TFSKIRVKPEHVIGVTVAFVIIEAI 46 (53)
T ss_dssp ---------C-CCCSCCCCHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhc-cCCccccCCeehhhhHHHHHHHHHH
Confidence 3344477777 5557899999988888877766543
No 4
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=8.37 E-value=2.6e+02 Score=21.65 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=17.8
Q ss_pred CCCcccccccCCCCcccccCHHHHHHHHHHHHHHHHhhch
Q 015954 103 TASPIYQFIASPSTFLHSVDARIKLVWLLALVLLPARSHI 142 (397)
Q Consensus 103 ~~~~~~~y~~~~~S~lhrldPr~Kll~~l~~~i~~~~~~~ 142 (397)
.+..+-+|++. ++.--++||.+=+++.++++..+++.|-
T Consensus 42 ss~gllrfYtd-ds~GlKV~P~~VLv~sl~FIa~VilLHI 80 (87)
T 2ww9_C 42 SSSSILKLYTD-EANGFRVDSLVVLFLSVGFIFSVIALHL 80 (87)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHHHHC--
T ss_pred CchhHHHHhhc-CCCceEEcCeeehhhHHHHHHHHHHHHH
Confidence 34555577777 7888899999999988888877766553
No 5
>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}
Probab=7.44 E-value=2.1e+02 Score=22.65 Aligned_cols=38 Identities=16% Similarity=0.090 Sum_probs=22.9
Q ss_pred CCCcccccccCCCCcccccCHHHHHHHHHHHHHHHHhhc
Q 015954 103 TASPIYQFIASPSTFLHSVDARIKLVWLLALVLLPARSH 141 (397)
Q Consensus 103 ~~~~~~~y~~~~~S~lhrldPr~Kll~~l~~~i~~~~~~ 141 (397)
.+..+-+|++. ++.=-++||.+-+++.++++..+++.|
T Consensus 51 SsaGllRfY~d-ds~GlKV~P~~VLv~sl~Fi~~Vi~Lh 88 (96)
T 2wwb_C 51 GTGGMWRFYTE-DSPGLKVGPVPVLVMSLLFIASVFMLH 88 (96)
T ss_dssp ----------C-CSCCCCCSSCSHHHHHHHHHHHHHHHS
T ss_pred CCcceeeeeec-CCCceEECCEEehhhHHHHHHHHHHHH
Confidence 33455578887 888889999999998888887776544
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=6.56 E-value=1.6e+03 Score=21.82 Aligned_cols=18 Identities=11% Similarity=0.065 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHcCCCC
Q 015954 339 FGHAEQISQAMIVRGFRG 356 (397)
Q Consensus 339 l~rAe~la~AMeaRGf~~ 356 (397)
++.|.++-..|..+|...
T Consensus 156 ~~~A~~l~~~M~~~G~~P 173 (501)
T 4g26_A 156 ADKAYEVDAHMVESEVVP 173 (501)
T ss_dssp HHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHHHhcCCCC
Confidence 445555555555555443
No 7
>1xrd_A LH-1, light-harvesting protein B-880, alpha chain; membrane spanning helix, pigment binding, photosynthesis, membrane protein; NMR {Rhodospirillum rubrum} SCOP: f.3.1.1
Probab=6.08 E-value=6.5e+02 Score=17.54 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=10.1
Q ss_pred cCHHHHHHHHHHHHH
Q 015954 121 VDARIKLVWLLALVL 135 (397)
Q Consensus 121 ldPr~Kll~~l~~~i 135 (397)
+|||.-++...++.+
T Consensus 8 fDPrr~Lva~~~fl~ 22 (52)
T 1xrd_A 8 FDPRQALVGLATFLF 22 (52)
T ss_dssp SSHHHHHHHHHHHHH
T ss_pred EchhHHHHHHHHHHH
Confidence 588887776665544
No 8
>2dly_A FYN-related kinase; BRK family kinase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=5.49 E-value=4.4e+02 Score=20.69 Aligned_cols=46 Identities=20% Similarity=0.232 Sum_probs=33.0
Q ss_pred cCCCchhhHhhhccCCceeccccccHHH-HHhh----cCceEEEeeccccC
Q 015954 28 IPSNSTLILARNCSNPRLYLPLSKTQKR-ILKK----NGDFVIRASVRDKN 73 (397)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~ 73 (397)
+||||..-..-+..++-+.-.++.+.-. .+++ .+.|-||.+..+.|
T Consensus 2 ~psnyv~~~~~l~~~~WyhG~isR~eAe~lL~~~~~~~G~FLVR~S~~~~g 52 (121)
T 2dly_A 2 SSGSSGAEDRSLQAEPWFFGAIKRADAEKQLLYSENQTGAFLIRESESQKG 52 (121)
T ss_dssp CSCCCCCSSGGGGGCSSBCSSCCHHHHHHHHTSSSCCTTCEEEEECSSSSS
T ss_pred CCccccccccccCcCCccccCCCHHHHHHHHhcCCCCCCEEEEEcCCCCCC
Confidence 7888876545677788888888866544 3553 37899999876655
No 9
>2end_A Endonuclease V; 1.45A {Enterobacteria phage T4} SCOP: a.18.1.1 PDB: 1enj_A 1eni_A 1enk_A 2fcc_A* 1vas_A*
Probab=5.49 E-value=4.7e+02 Score=21.97 Aligned_cols=21 Identities=14% Similarity=0.167 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHcCCCCC
Q 015954 337 NIFGHAEQISQAMIVRGFRGD 357 (397)
Q Consensus 337 ~sl~rAe~la~AMeaRGf~~~ 357 (397)
...+|-+++..-|..|||.-.
T Consensus 66 ~L~kRy~~L~~Em~~RGy~~~ 86 (138)
T 2end_A 66 FLRKRQIELIAECLKRGFNIK 86 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHHHcCCCCC
Confidence 457888999999999999853
No 10
>1abz_A Alpha-T-alpha, ATA; de novo design, helix-turn-helix, peptide; HET: SIN; NMR {} SCOP: k.15.1.1
Probab=5.47 E-value=4.8e+02 Score=16.61 Aligned_cols=18 Identities=33% Similarity=0.372 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHcCCCCCC
Q 015954 341 HAEQISQAMIVRGFRGDS 358 (397)
Q Consensus 341 rAe~la~AMeaRGf~~~~ 358 (397)
|.|+--.|+|+||-+.+.
T Consensus 7 rveqelqaleargtdsna 24 (40)
T 1abz_A 7 RVEQELQALEARGTDSNA 24 (40)
T ss_dssp HHHHHHHHHHHTCSSCSS
T ss_pred HHHHHHHHHHHcCCCchH
Confidence 556677899999977653
Done!