Query 015954
Match_columns 397
No_of_seqs 155 out of 1400
Neff 6.5
Searched_HMMs 13730
Date Mon Mar 25 05:25:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015954.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015954hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2ayua1 d.305.1.1 (A:70-370) N 15.2 29 0.0021 30.8 1.9 25 2-26 149-174 (301)
2 d2e50a1 d.305.1.1 (A:1-222) Pr 12.2 36 0.0026 28.8 1.5 25 2-27 111-135 (222)
3 d1iarb2 b.1.2.1 (B:97-197) Int 10.9 59 0.0043 22.3 2.2 27 57-88 70-98 (101)
4 d2gysa4 b.1.2.1 (A:317-416) Co 8.6 93 0.0068 21.3 2.5 24 62-88 75-98 (100)
5 d1pvma3 g.41.13.1 (A:143-178) 7.3 55 0.004 19.1 0.4 8 39-46 26-33 (36)
6 d1e7la1 a.140.4.1 (A:104-157) 6.3 1.4E+02 0.01 19.4 2.2 20 341-361 18-37 (54)
7 d1n26a3 b.1.2.1 (A:196-299) In 6.2 1.2E+02 0.0086 20.8 2.1 29 57-88 68-96 (104)
8 d1v9la1 c.2.1.7 (A:180-421) Gl 6.2 1.4E+02 0.0099 25.0 2.8 12 343-354 230-241 (242)
9 d2d9qb2 b.1.2.1 (B:204-308) Gr 5.9 1.2E+02 0.009 20.8 2.0 26 57-87 71-98 (105)
10 d1gtma1 c.2.1.7 (A:181-419) Gl 5.7 5.7E+02 0.042 20.7 6.8 19 338-356 219-238 (239)
No 1
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=15.24 E-value=29 Score=30.78 Aligned_cols=25 Identities=32% Similarity=0.430 Sum_probs=20.8
Q ss_pred CccCCCCCCCcceeEeeec-CCCCCc
Q 015954 2 SCTHSSNPTAGFSLSFQFL-SPNPKT 26 (397)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~-~~~~~~ 26 (397)
.|.+..++..||++.|.|- +|||--
T Consensus 149 ~ve~~~d~~~gf~l~F~F~f~~N~yF 174 (301)
T d2ayua1 149 GLEYLTDGRPGFKLLFRFDSSANPFF 174 (301)
T ss_dssp ECCBCCSSSCEEEEEEEECTTTCSSB
T ss_pred EEEEccCCCCCceEEEEEecCCCCCC
Confidence 4567788899999999998 799943
No 2
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.16 E-value=36 Score=28.75 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=20.0
Q ss_pred CccCCCCCCCcceeEeeecCCCCCcc
Q 015954 2 SCTHSSNPTAGFSLSFQFLSPNPKTT 27 (397)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 27 (397)
.|++..++..||.+.|.| .|||--+
T Consensus 111 ~v~~~~~~~~~f~i~F~F-~~N~yF~ 135 (222)
T d2e50a1 111 EVTEFEDIKSGYRIDFYF-DENPYFE 135 (222)
T ss_dssp EEEECCSSCCCEEEEEEE-CSCSSBS
T ss_pred eeeeccCCCCceEEEEEe-CCCCccc
Confidence 356678888999999999 6898543
No 3
>d1iarb2 b.1.2.1 (B:97-197) Interleukin-4 receptor alpha chain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.92 E-value=59 Score=22.32 Aligned_cols=27 Identities=26% Similarity=0.500 Sum_probs=14.3
Q ss_pred HhhcCc--eEEEeeccccCCCCCCCccccccccc
Q 015954 57 LKKNGD--FVIRASVRDKNNNNGASNWVNWLPTE 88 (397)
Q Consensus 57 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (397)
|+.++. |+|+|... . |...|++|-++.
T Consensus 70 L~p~t~Y~~rVrA~~~-~----g~g~wSewS~~v 98 (101)
T d1iarb2 70 LKSGISYRARVRAWAQ-A----YNTTWSEWSPST 98 (101)
T ss_dssp ---CCCEEEEEEEECG-G----GTCCCCCCCCCE
T ss_pred CCCCCEEEEEEEEEcC-C----CCCCCcCCCCCE
Confidence 344555 66666543 2 344688887764
No 4
>d2gysa4 b.1.2.1 (A:317-416) Common beta-chain in the GM-CSF, IL-3 and IL-5 receptors {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.59 E-value=93 Score=21.26 Aligned_cols=24 Identities=13% Similarity=0.260 Sum_probs=15.0
Q ss_pred ceEEEeeccccCCCCCCCccccccccc
Q 015954 62 DFVIRASVRDKNNNNGASNWVNWLPTE 88 (397)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (397)
.|+|||...+ |. ....|.+|-++.
T Consensus 75 ~~rVRa~~~~-g~--~~g~WSeWS~~~ 98 (100)
T d2gysa4 75 WARVRVRTSR-TG--YNGIWSEWSEAR 98 (100)
T ss_dssp EEEEEEEECC-TT--CCBCCCCCCCCE
T ss_pred EEEEEEEECC-CC--CCCCccCCCCCc
Confidence 3778876543 43 345688887663
No 5
>d1pvma3 g.41.13.1 (A:143-178) Hypothetical protein Ta0289 C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=7.26 E-value=55 Score=19.15 Aligned_cols=8 Identities=50% Similarity=0.854 Sum_probs=6.3
Q ss_pred hccCCcee
Q 015954 39 NCSNPRLY 46 (397)
Q Consensus 39 ~~~~~~~~ 46 (397)
-|+||+|.
T Consensus 26 rcsnpacd 33 (36)
T d1pvma3 26 RCSNPACD 33 (36)
T ss_dssp EESCTTCC
T ss_pred EcCCCccc
Confidence 48899985
No 6
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=6.26 E-value=1.4e+02 Score=19.37 Aligned_cols=20 Identities=30% Similarity=0.552 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHcCCCCCCCCe
Q 015954 341 HAEQISQAMIVRGFRGDSSTH 361 (397)
Q Consensus 341 rAe~la~AMeaRGf~~~~~rT 361 (397)
++|-+|+ |++|||+.+.+-|
T Consensus 18 k~eM~Ae-m~~~GF~Yne~dt 37 (54)
T d1e7la1 18 KEEMMAE-MLQRGFEYNESDT 37 (54)
T ss_dssp HHHHHHH-HHHHTCCCCTTCC
T ss_pred HHHHHHH-HHHcCccccchhH
Confidence 3444554 9999999876544
No 7
>d1n26a3 b.1.2.1 (A:196-299) Interleukin-6 receptor alpha chain, domains 2 and 3 {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.23 E-value=1.2e+02 Score=20.82 Aligned_cols=29 Identities=17% Similarity=0.477 Sum_probs=15.2
Q ss_pred HhhcCceEEEeeccccCCCCCCCccccccccc
Q 015954 57 LKKNGDFVIRASVRDKNNNNGASNWVNWLPTE 88 (397)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (397)
|+-++.+.++-.+.+.. |...|.+|-+++
T Consensus 68 L~p~t~Y~~rVra~n~~---g~g~wSewS~~~ 96 (104)
T d1n26a3 68 AWSGLRHVVQLRAQEEF---GQGEWSEWSPEA 96 (104)
T ss_dssp CCTTCCEEEEEEEEETT---TBSCCCCCCCCE
T ss_pred CCCCCEEEEEEEEEeCC---CccCCcCCcCCE
Confidence 44556644444444332 345688876653
No 8
>d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]}
Probab=6.19 E-value=1.4e+02 Score=25.04 Aligned_cols=12 Identities=50% Similarity=0.847 Sum_probs=10.9
Q ss_pred HHHHHHHHHcCC
Q 015954 343 EQISQAMIVRGF 354 (397)
Q Consensus 343 e~la~AMeaRGf 354 (397)
+++++||..|||
T Consensus 230 ~rva~a~~~rG~ 241 (242)
T d1v9la1 230 ERIYNAMKIRGW 241 (242)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhcCC
Confidence 578999999997
No 9
>d2d9qb2 b.1.2.1 (B:204-308) Granulocyte colony-stimulating factor (GC-SF) receptor {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.93 E-value=1.2e+02 Score=20.80 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=13.4
Q ss_pred HhhcCc--eEEEeeccccCCCCCCCcccccccc
Q 015954 57 LKKNGD--FVIRASVRDKNNNNGASNWVNWLPT 87 (397)
Q Consensus 57 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (397)
|+.++. |+|+|.. +. |...|.+|-+.
T Consensus 71 L~p~t~Y~frVra~n--~~---g~G~~S~wS~~ 98 (105)
T d2d9qb2 71 LLPATAYTLQIRCIR--WP---LPGHWSDWSPS 98 (105)
T ss_dssp CCSCCCEEEEEEEEE--CS---SCCCCCCCCCC
T ss_pred ccCCeEEEEEEEEEe--CC---CCCCCcCCCCC
Confidence 344554 6666643 22 34456666554
No 10
>d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=5.75 E-value=5.7e+02 Score=20.72 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=13.8
Q ss_pred HHHHH-HHHHHHHHHcCCCC
Q 015954 338 IFGHA-EQISQAMIVRGFRG 356 (397)
Q Consensus 338 sl~rA-e~la~AMeaRGf~~ 356 (397)
++..| +++++||..||+-.
T Consensus 219 A~~~A~~Ria~a~~~rG~v~ 238 (239)
T d1gtma1 219 AYVVAVQRVYQAMLDRGWVK 238 (239)
T ss_dssp HHHHHHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHHHHHHHcCCcC
Confidence 44444 56899999999743
Done!