BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015955
         (397 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
           Monocytogenes
          Length = 263

 Score = 32.3 bits (72), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 24/92 (26%), Positives = 46/92 (50%), Gaps = 2/92 (2%)

Query: 165 GLANARKALLSGCSAGGLATFLHCDEFTKYLPNNASVKCLSDAGFFLDERDISLNHTMRS 224
           GLANA K  L   S   L +         +  +N++++ L+   FF + +++ L+H   S
Sbjct: 17  GLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQIS 76

Query: 225 LYKEIVELQGVEQ-NLDKNCTKSLY-IPELCF 254
               + +L  +E+ ++++N  K+L  IP  C 
Sbjct: 77  DLSPLKDLTKLEELSVNRNRLKNLNGIPSACL 108


>pdb|4EKV|A Chain A, Streptavidin 8-Aa-Loop H127c Mutein With Reversible Biotin
           Binding
          Length = 159

 Score = 28.9 bits (63), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 173 LLSGCSAGGL--ATFLHCDEFTKYLPNNASVKCLSDAGF 209
           L SG S+ G   +T + CD FTK  P+ AS+     AG 
Sbjct: 110 LTSGDSSNGSDGSTLVGCDTFTKVKPSAASIDAAKKAGV 148


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,289,371
Number of Sequences: 62578
Number of extensions: 520934
Number of successful extensions: 1297
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1296
Number of HSP's gapped (non-prelim): 4
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)