BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015955
         (397 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q6P988|NOTUM_HUMAN Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2
          Length = 496

 Score = 92.8 bits (229), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 77/266 (28%), Positives = 122/266 (45%), Gaps = 25/266 (9%)

Query: 30  EVKMTLVQNASVHGAFCLDGSLPAYHLHRGFGAGARNWLLQFEGGGWCNDIPSCLERAQT 89
           ++++ L+ N SV    C DGS   Y+L      G+R WLL  EGG +C +  +C  R  T
Sbjct: 88  DLRLHLLLNTSV---TCNDGSPAGYYLKES--RGSRRWLLFLEGGWYCFNRENCDSRYDT 142

Query: 90  RRG--STRYMTKYEIFSGILSNNASLNPDFYNWNRVKIRYCDGASFAGNAKFDNGTSSLY 147
            R   S+R   +    +GILS+    NP ++N N V I YC    ++G A   +  +   
Sbjct: 143 MRRLMSSRDWPRTRTGTGILSSQPEENPYWWNANMVFIPYCSSDVWSG-ASSKSEKNEYA 201

Query: 148 FRGQKIWEAIILDLLPKGLANARKALLSGCSAGGLATFLHCDEFTKYLPN----NASVKC 203
           F G  I + ++ +LL +GL+ A+  LL+G SAGG    L+ D   + L         V+ 
Sbjct: 202 FMGALIIQEVVRELLGRGLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRG 261

Query: 204 LSDAGFFLDER--------DISLNHTMRSLYKEIVELQGVEQNLDKNCTKSLYIPEL--C 253
           L+D+G+FLD +        D        ++ + I    GV   + + C +     E   C
Sbjct: 262 LADSGWFLDNKQYRHTDCVDTITCAPTEAIRRGIRYWNGV---VPERCRRQFQEGEEWNC 318

Query: 254 FFPQYALRYITTPFFILNSAYDVFQF 279
           FF       +  P F++   +D  Q 
Sbjct: 319 FFGYKVYPTLRCPVFVVQWLFDEAQL 344


>sp|Q8R116|NOTUM_MOUSE Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2
          Length = 503

 Score = 92.0 bits (227), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 65/197 (32%), Positives = 101/197 (51%), Gaps = 12/197 (6%)

Query: 24  AKDRRLEVKMTLVQNASVHGAFCLDGSLPAYHLHRGFGAGARNWLLQFEGGGWCNDIPSC 83
           A+    ++++ L+ N SV    C DGS   Y+L      G+R WLL  EGG +C +  +C
Sbjct: 89  AQQLNEDLRLHLLLNTSVT---CNDGSPAGYYLKES--KGSRRWLLFLEGGWYCFNRENC 143

Query: 84  LERAQTRRG--STRYMTKYEIFSGILSNNASLNPDFYNWNRVKIRYCDGASFAGNAKFDN 141
             R  T R   S++        +GILS+    NP ++N N V I YC    ++G A   +
Sbjct: 144 DSRYSTMRRLMSSKDWPHTRTGTGILSSQPEENPHWWNANMVFIPYCSSDVWSG-ASPKS 202

Query: 142 GTSSLYFRGQKIWEAIILDLLPKGLANARKALLSGCSAGGLATFLHCDEFTKYLPN---- 197
             +   F G  I + ++ +LL KGL+ A+  LL+G SAGG    L+ D   + L      
Sbjct: 203 DKNEYAFMGSLIIQEVVRELLGKGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYP 262

Query: 198 NASVKCLSDAGFFLDER 214
           +  V+ L+D+G+FLD +
Sbjct: 263 SIQVRGLADSGWFLDNK 279


>sp|P29458|MCM4_SCHPO DNA replication licensing factor mcm4 OS=Schizosaccharomyces pombe
           (strain 972 / ATCC 24843) GN=mcm4 PE=1 SV=2
          Length = 931

 Score = 35.4 bits (80), Expect = 0.84,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 65/155 (41%), Gaps = 22/155 (14%)

Query: 95  RYMTKYEIFSGILSNNASLNPDFYNWNRVKIRYCDGASFAGNAKFDNGTSSLYFRGQ--- 151
           + ++K +    ILS   SL P  Y  + VK           N  F  G S  Y RG    
Sbjct: 485 QQVSKRDDIYDILSR--SLAPSIYEMDDVKKGLLLQLFGGTNKSFHKGASPRY-RGDINI 541

Query: 152 ------KIWEAIILD----LLPKGLANARKALLSGCSAGGLATFLHCDEFTKYLPNNASV 201
                    ++ IL     + P+G+  + K    G SA GL  ++  D+ TK L   +  
Sbjct: 542 LMCGDPSTSKSQILKYVHKIAPRGVYTSGK----GSSAVGLTAYITRDQDTKQLVLESGA 597

Query: 202 KCLSDAGFF-LDERDISLNHTMRSLYKEIVELQGV 235
             LSD G   +DE D  ++   RS+  E++E Q V
Sbjct: 598 LVLSDGGICCIDEFD-KMSDATRSILHEVMEQQTV 631


>sp|Q8UD63|LEU1_AGRT5 2-isopropylmalate synthase OS=Agrobacterium tumefaciens (strain C58
           / ATCC 33970) GN=leuA PE=3 SV=2
          Length = 558

 Score = 35.0 bits (79), Expect = 0.92,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 47/105 (44%), Gaps = 8/105 (7%)

Query: 132 SFAGNAK--FDNGTSSLYFRGQKIWEAIILDLLPKGLANARKALL---SGCSAGGLATFL 186
           +F+G+ +   + G  ++      +WE   L + PK +  + +A++   S    GG+A  L
Sbjct: 331 AFSGSHQDAINKGMKAIKVANHPVWEVPYLPIDPKDVGRSYEAIIRINSQSGKGGIAYIL 390

Query: 187 HCDEFTKYLPNNASVKCLSDAGFFLDERDISLNHTMRSLYKEIVE 231
             D +   LP N  V+   D     DE  + L    + +Y+  +E
Sbjct: 391 QQD-YGINLPRNLQVEFREDIQRITDEEGVEL--PAKRIYERFIE 432


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.325    0.139    0.454 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,515,998
Number of Sequences: 539616
Number of extensions: 6351931
Number of successful extensions: 14361
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 14353
Number of HSP's gapped (non-prelim): 6
length of query: 397
length of database: 191,569,459
effective HSP length: 120
effective length of query: 277
effective length of database: 126,815,539
effective search space: 35127904303
effective search space used: 35127904303
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)