Query 015956
Match_columns 397
No_of_seqs 328 out of 1771
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 02:28:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015956.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015956hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02281 chlorophyllide a oxyg 100.0 7E-118 2E-122 922.5 34.5 386 1-387 1-390 (536)
2 PLN02518 pheophorbide a oxygen 100.0 1.4E-35 3E-40 311.7 17.1 165 210-375 83-266 (539)
3 PLN00095 chlorophyllide a oxyg 100.0 3.4E-35 7.3E-40 295.3 16.2 181 211-391 66-295 (394)
4 COG4638 HcaE Phenylpropionate 100.0 2.5E-35 5.4E-40 295.1 11.9 168 210-377 20-200 (367)
5 TIGR03228 anthran_1_2_A anthra 100.0 8.8E-35 1.9E-39 299.4 12.5 165 209-374 30-218 (438)
6 TIGR03229 benzo_1_2_benA benzo 100.0 2.1E-33 4.5E-38 289.0 13.3 164 210-375 31-221 (433)
7 cd04337 Rieske_RO_Alpha_Cao Ca 100.0 7.5E-31 1.6E-35 229.4 12.4 123 203-325 3-125 (129)
8 cd03479 Rieske_RO_Alpha_PhDO_l 100.0 5.5E-30 1.2E-34 227.6 12.7 130 203-332 7-142 (144)
9 cd04338 Rieske_RO_Alpha_Tic55 100.0 1.5E-29 3.3E-34 222.4 12.4 116 211-326 11-131 (134)
10 cd03537 Rieske_RO_Alpha_PrnD T 100.0 3E-29 6.6E-34 218.2 12.0 110 216-326 2-120 (123)
11 cd03531 Rieske_RO_Alpha_KSH Th 100.0 9.5E-29 2.1E-33 211.8 11.9 109 217-325 1-111 (115)
12 cd03480 Rieske_RO_Alpha_PaO Ri 100.0 2.2E-28 4.8E-33 216.2 10.7 113 213-325 13-134 (138)
13 cd03532 Rieske_RO_Alpha_VanA_D 100.0 4.7E-28 1E-32 207.3 11.5 109 214-323 2-112 (116)
14 cd03541 Rieske_RO_Alpha_CMO Ri 99.9 1.6E-27 3.5E-32 205.9 11.5 107 217-323 1-114 (118)
15 cd03548 Rieske_RO_Alpha_OMO_CA 99.9 2.2E-27 4.8E-32 208.9 12.1 110 213-323 10-126 (136)
16 cd03545 Rieske_RO_Alpha_OHBDO_ 99.9 1.5E-27 3.3E-32 213.7 10.6 115 211-325 18-148 (150)
17 cd03539 Rieske_RO_Alpha_S5H Th 99.9 1.8E-27 4E-32 208.2 10.6 108 218-325 1-127 (129)
18 cd03472 Rieske_RO_Alpha_BPDO_l 99.9 2.4E-27 5.2E-32 207.2 10.9 115 211-325 2-126 (128)
19 cd03469 Rieske_RO_Alpha_N Ries 99.9 4.8E-27 1E-31 199.5 10.5 108 218-325 1-116 (118)
20 cd03538 Rieske_RO_Alpha_AntDO 99.9 2.2E-26 4.8E-31 205.3 11.2 116 210-325 15-144 (146)
21 cd03535 Rieske_RO_Alpha_NDO Ri 99.9 3.9E-26 8.4E-31 197.8 11.1 110 216-325 1-121 (123)
22 cd03536 Rieske_RO_Alpha_DTDO T 99.9 5.9E-26 1.3E-30 196.7 11.6 109 218-326 1-120 (123)
23 cd03528 Rieske_RO_ferredoxin R 99.9 2.7E-25 5.8E-30 183.2 10.5 96 218-318 1-97 (98)
24 cd03474 Rieske_T4moC Toluene-4 99.9 7.6E-25 1.6E-29 184.4 11.8 103 218-325 1-104 (108)
25 cd03530 Rieske_NirD_small_Baci 99.9 6E-25 1.3E-29 181.8 10.5 97 218-319 1-98 (98)
26 cd03542 Rieske_RO_Alpha_HBDO R 99.9 1.1E-24 2.4E-29 189.3 11.2 109 218-326 1-122 (123)
27 TIGR02377 MocE_fam_FeS Rieske 99.9 5.2E-24 1.1E-28 178.3 10.8 100 217-320 1-101 (101)
28 cd03529 Rieske_NirD Assimilato 99.9 7.5E-24 1.6E-28 177.5 10.3 97 218-319 1-103 (103)
29 TIGR02378 nirD_assim_sml nitri 99.9 7.8E-24 1.7E-28 177.6 10.0 99 217-320 1-105 (105)
30 PRK09965 3-phenylpropionate di 99.9 2.2E-23 4.8E-28 175.8 10.3 101 217-323 2-104 (106)
31 cd03478 Rieske_AIFL_N AIFL (ap 99.9 2.1E-23 4.5E-28 171.9 9.3 93 220-317 2-95 (95)
32 PF13806 Rieske_2: Rieske-like 99.9 8.6E-22 1.9E-26 166.7 10.5 98 217-319 1-104 (104)
33 PF00355 Rieske: Rieske [2Fe-2 99.9 6.3E-22 1.4E-26 162.6 8.0 93 217-314 1-97 (97)
34 PRK09511 nirD nitrite reductas 99.9 1.6E-21 3.5E-26 165.8 10.4 98 217-319 3-107 (108)
35 cd03467 Rieske Rieske domain; 99.8 4.2E-21 9.2E-26 158.4 10.0 95 218-316 1-97 (98)
36 COG2146 {NirD} Ferredoxin subu 99.8 1.1E-20 2.4E-25 160.5 10.4 101 216-320 3-105 (106)
37 cd03477 Rieske_YhfW_C YhfW fam 99.8 3.1E-20 6.7E-25 153.5 8.8 88 221-313 2-89 (91)
38 cd03476 Rieske_ArOX_small Smal 99.8 8.1E-19 1.8E-23 153.5 9.9 95 220-319 5-114 (126)
39 cd03471 Rieske_cytochrome_b6f 99.7 1.5E-17 3.3E-22 145.6 10.4 90 228-323 21-114 (126)
40 TIGR02694 arsenite_ox_S arseni 99.7 5.2E-17 1.1E-21 142.8 9.7 94 220-318 8-115 (129)
41 cd03470 Rieske_cytochrome_bc1 99.7 2.2E-16 4.8E-21 138.1 10.1 92 223-318 5-125 (126)
42 cd03473 Rieske_CMP_Neu5Ac_hydr 99.7 1.7E-16 3.7E-21 135.1 7.4 72 224-296 14-89 (107)
43 PRK13474 cytochrome b6-f compl 99.6 1.4E-14 2.9E-19 133.8 10.1 88 227-320 72-163 (178)
44 TIGR01416 Rieske_proteo ubiqui 99.4 4.4E-13 9.4E-18 123.4 10.3 93 218-315 41-169 (174)
45 cd03475 Rieske_SoxF_SoxL SoxF 99.2 1.3E-10 2.9E-15 106.6 9.5 68 248-319 73-159 (171)
46 COG0723 QcrA Rieske Fe-S prote 98.8 5.5E-09 1.2E-13 95.8 6.5 75 240-318 84-164 (177)
47 TIGR03171 soxL2 Rieske iron-su 98.5 3E-07 6.4E-12 91.6 7.1 69 247-319 173-276 (321)
48 KOG1671 Ubiquinol cytochrome c 98.4 4.3E-07 9.4E-12 84.9 5.3 75 223-297 91-191 (210)
49 cd08884 RHO_alpha_C_GbcA-like 97.9 4.8E-06 1E-10 77.7 1.7 38 337-374 7-44 (205)
50 PF00848 Ring_hydroxyl_A: Ring 97.8 2.3E-06 5E-11 76.6 -1.6 35 345-379 11-45 (209)
51 cd08881 RHO_alpha_C_NDO-like C 97.4 4.6E-05 1E-09 71.9 0.3 35 343-377 8-43 (206)
52 PF11723 Aromatic_hydrox: Homo 95.5 0.013 2.8E-07 56.8 3.8 45 336-382 21-68 (240)
53 KOG1336 Monodehydroascorbate/f 95.3 0.011 2.3E-07 62.5 2.6 38 261-298 1-39 (478)
54 PRK00294 hscB co-chaperone Hsc 80.6 8.4 0.00018 35.8 8.0 89 70-161 53-160 (173)
55 PRK14161 heat shock protein Gr 77.9 11 0.00023 35.3 7.8 55 98-158 12-66 (178)
56 PRK14127 cell division protein 76.4 7.1 0.00015 33.8 5.8 42 105-149 27-68 (109)
57 PRK03578 hscB co-chaperone Hsc 76.4 18 0.00039 33.7 8.8 87 72-161 57-163 (176)
58 PF09538 FYDLN_acid: Protein o 74.3 1.5 3.3E-05 37.8 1.1 31 256-288 9-39 (108)
59 COG1645 Uncharacterized Zn-fin 68.8 2.5 5.4E-05 37.8 1.2 29 255-286 27-55 (131)
60 PRK00888 ftsB cell division pr 68.0 28 0.00061 29.7 7.5 51 119-169 28-78 (105)
61 PF07820 TraC: TraC-like prote 66.7 28 0.00061 29.4 6.9 33 117-149 1-33 (92)
62 PRK14156 heat shock protein Gr 65.5 28 0.00061 32.6 7.5 55 103-158 20-74 (177)
63 PF13118 DUF3972: Protein of u 64.2 15 0.00032 32.7 5.1 47 96-142 69-116 (126)
64 PF11559 ADIP: Afadin- and alp 63.8 47 0.001 29.5 8.4 87 68-158 27-113 (151)
65 PF07282 OrfB_Zn_ribbon: Putat 62.2 5.9 0.00013 30.5 2.0 33 255-288 27-59 (69)
66 PF10080 DUF2318: Predicted me 61.6 43 0.00094 28.7 7.4 81 227-320 2-92 (102)
67 PF13334 DUF4094: Domain of un 61.1 6.7 0.00014 33.1 2.3 32 108-139 63-94 (95)
68 PF04977 DivIC: Septum formati 60.6 25 0.00055 27.2 5.5 54 115-168 14-67 (80)
69 PF09740 DUF2043: Uncharacteri 57.4 5.5 0.00012 34.6 1.2 26 263-288 73-100 (110)
70 COG1096 Predicted RNA-binding 57.3 19 0.00041 34.1 4.8 57 224-284 116-174 (188)
71 TIGR02449 conserved hypothetic 54.7 59 0.0013 25.8 6.5 58 102-159 5-62 (65)
72 PF14803 Nudix_N_2: Nudix N-te 52.4 8.5 0.00018 26.6 1.3 29 257-285 1-32 (34)
73 TIGR02300 FYDLN_acid conserved 52.2 7 0.00015 34.8 1.1 31 256-288 9-39 (129)
74 COG1938 Archaeal enzymes of AT 51.7 29 0.00063 34.2 5.3 60 82-151 178-237 (244)
75 PRK00420 hypothetical protein; 51.6 11 0.00023 32.9 2.1 34 255-290 22-56 (112)
76 PRK01773 hscB co-chaperone Hsc 48.7 78 0.0017 29.4 7.4 85 72-160 53-158 (173)
77 PF06005 DUF904: Protein of un 48.7 91 0.002 25.0 6.8 32 126-157 40-71 (72)
78 TIGR00595 priA primosomal prot 47.9 16 0.00035 39.2 3.2 30 257-287 223-252 (505)
79 PF07743 HSCB_C: HSCB C-termin 47.6 1.4E+02 0.0029 23.5 7.9 60 98-161 9-72 (78)
80 PF10392 COG5: Golgi transport 47.5 94 0.002 27.2 7.5 26 69-94 26-51 (132)
81 PF03195 DUF260: Protein of un 46.3 24 0.00052 30.1 3.4 47 92-141 53-101 (101)
82 PF05546 She9_MDM33: She9 / Md 44.3 61 0.0013 31.2 6.1 50 109-159 24-73 (207)
83 PF10186 Atg14: UV radiation r 43.5 1.3E+02 0.0027 29.0 8.4 43 116-158 54-96 (302)
84 PF07028 DUF1319: Protein of u 42.7 36 0.00079 30.3 4.0 24 83-106 4-39 (126)
85 PF05278 PEARLI-4: Arabidopsis 42.4 1.2E+02 0.0026 30.4 8.0 40 120-159 202-241 (269)
86 PRK14147 heat shock protein Gr 42.4 80 0.0017 29.4 6.5 39 120-158 27-65 (172)
87 TIGR02098 MJ0042_CXXC MJ0042 f 41.4 16 0.00034 25.0 1.3 29 258-286 4-36 (38)
88 PRK14549 50S ribosomal protein 41.1 1.1E+02 0.0023 24.3 6.1 28 118-145 12-39 (69)
89 PRK04654 sec-independent trans 41.0 1.1E+02 0.0023 29.7 7.2 57 99-156 36-92 (214)
90 COG4391 Uncharacterized protei 40.8 16 0.00036 28.6 1.4 17 272-288 45-61 (62)
91 PRK14157 heat shock protein Gr 40.7 82 0.0018 30.8 6.5 39 120-158 86-124 (227)
92 COG0497 RecN ATPase involved i 40.2 77 0.0017 34.8 6.8 58 98-155 322-379 (557)
93 PRK14141 heat shock protein Gr 40.1 85 0.0018 30.2 6.4 39 120-158 40-78 (209)
94 PRK14164 heat shock protein Gr 39.9 87 0.0019 30.4 6.5 42 117-158 76-117 (218)
95 smart00661 RPOL9 RNA polymeras 39.7 36 0.00078 24.5 3.1 34 258-291 2-36 (52)
96 PRK09039 hypothetical protein; 39.6 1.3E+02 0.0028 30.8 8.1 40 120-159 146-193 (343)
97 COG1842 PspA Phage shock prote 39.2 1.4E+02 0.003 29.0 7.8 69 101-169 14-82 (225)
98 PF05377 FlaC_arch: Flagella a 39.0 47 0.001 25.5 3.6 34 108-141 4-37 (55)
99 PRK11637 AmiB activator; Provi 38.8 1.2E+02 0.0026 31.6 7.9 37 117-153 88-124 (428)
100 TIGR00219 mreC rod shape-deter 38.4 73 0.0016 31.7 5.9 53 105-157 53-105 (283)
101 PF08606 Prp19: Prp19/Pso4-lik 37.3 72 0.0016 25.7 4.5 28 121-149 25-52 (70)
102 PF13094 CENP-Q: CENP-Q, a CEN 37.0 1.7E+02 0.0038 26.2 7.7 44 115-158 38-81 (160)
103 PRK14139 heat shock protein Gr 36.9 1.1E+02 0.0023 28.9 6.5 39 120-158 41-79 (185)
104 PRK05580 primosome assembly pr 36.8 28 0.00061 38.8 3.0 30 257-287 391-420 (679)
105 PRK14151 heat shock protein Gr 36.7 1.1E+02 0.0024 28.6 6.5 39 120-158 29-67 (176)
106 PRK09039 hypothetical protein; 36.5 1.3E+02 0.0029 30.7 7.7 59 102-160 121-179 (343)
107 PF15155 MRFAP1: MORF4 family- 36.1 70 0.0015 28.0 4.6 47 105-161 13-63 (127)
108 PRK14155 heat shock protein Gr 35.5 1.1E+02 0.0024 29.3 6.5 39 120-158 22-60 (208)
109 PF07730 HisKA_3: Histidine ki 35.2 73 0.0016 23.8 4.3 57 101-157 8-65 (68)
110 cd00427 Ribosomal_L29_HIP Ribo 34.7 1.3E+02 0.0029 22.7 5.5 28 118-145 6-33 (57)
111 PRK14163 heat shock protein Gr 34.5 1.2E+02 0.0025 29.4 6.4 39 120-158 49-87 (214)
112 PF10243 MIP-T3: Microtubule-b 33.9 14 0.00029 40.0 0.0 45 113-157 490-534 (539)
113 PRK00398 rpoP DNA-directed RNA 33.8 27 0.00057 25.1 1.5 29 258-287 5-33 (46)
114 PF09304 Cortex-I_coil: Cortex 33.2 2.3E+02 0.005 24.6 7.3 37 122-158 41-77 (107)
115 PRK14146 heat shock protein Gr 33.2 1.3E+02 0.0028 29.1 6.5 39 120-158 63-101 (215)
116 PF13240 zinc_ribbon_2: zinc-r 32.6 21 0.00046 22.4 0.7 22 258-284 1-22 (23)
117 PRK14149 heat shock protein Gr 31.8 1.5E+02 0.0031 28.3 6.5 39 120-158 45-83 (191)
118 PRK14162 heat shock protein Gr 31.7 1.3E+02 0.0027 28.7 6.1 40 119-158 47-86 (194)
119 PF08317 Spc7: Spc7 kinetochor 31.6 1.5E+02 0.0033 29.8 7.1 39 120-158 225-263 (325)
120 PRK14159 heat shock protein Gr 31.0 1.4E+02 0.0031 27.9 6.2 41 118-158 30-70 (176)
121 PF11932 DUF3450: Protein of u 30.9 2.6E+02 0.0055 27.0 8.3 29 229-257 178-208 (251)
122 PRK05014 hscB co-chaperone Hsc 30.7 2.5E+02 0.0054 25.8 7.8 87 70-160 50-157 (171)
123 PF06148 COG2: COG (conserved 30.5 1.1E+02 0.0025 26.5 5.2 46 113-158 64-109 (133)
124 smart00549 TAFH TAF homology. 30.3 86 0.0019 26.5 4.2 39 98-137 41-79 (92)
125 TIGR02209 ftsL_broad cell divi 30.1 1.5E+02 0.0032 23.5 5.5 49 119-168 25-73 (85)
126 PRK14154 heat shock protein Gr 29.9 1.6E+02 0.0035 28.4 6.5 39 120-158 61-99 (208)
127 PF13815 Dzip-like_N: Iguana/D 29.8 72 0.0016 27.5 3.8 13 78-90 61-73 (118)
128 PF13863 DUF4200: Domain of un 29.8 2.5E+02 0.0053 23.8 7.2 53 98-150 54-106 (126)
129 PF15616 TerY-C: TerY-C metal 29.7 26 0.00057 31.3 1.1 28 257-284 78-114 (131)
130 PRK14143 heat shock protein Gr 29.5 1.6E+02 0.0034 28.9 6.5 39 120-158 76-114 (238)
131 PRK01356 hscB co-chaperone Hsc 29.5 2.3E+02 0.005 26.0 7.3 86 71-163 50-156 (166)
132 PF07794 DUF1633: Protein of u 29.3 74 0.0016 34.6 4.4 39 120-158 599-637 (790)
133 PF11853 DUF3373: Protein of u 28.7 32 0.0007 37.1 1.7 20 120-139 33-52 (489)
134 PF06677 Auto_anti-p27: Sjogre 28.7 28 0.00062 25.0 0.9 27 254-282 15-41 (41)
135 PRK14158 heat shock protein Gr 28.4 1.8E+02 0.0039 27.7 6.5 39 120-158 49-87 (194)
136 PF15456 Uds1: Up-regulated Du 28.1 1.4E+02 0.003 26.4 5.3 37 120-157 24-60 (124)
137 KOG2483 Upstream transcription 27.6 1.4E+02 0.003 29.2 5.7 64 75-138 75-139 (232)
138 COG0675 Transposase and inacti 27.4 39 0.00086 32.5 2.0 46 233-290 292-337 (364)
139 PRK14148 heat shock protein Gr 27.3 1.9E+02 0.0041 27.5 6.5 39 120-158 49-87 (195)
140 PRK09521 exosome complex RNA-b 27.2 1.2E+02 0.0027 28.0 5.2 57 227-286 119-177 (189)
141 PF03245 Phage_lysis: Bacterio 26.4 1.5E+02 0.0033 25.9 5.3 44 110-153 16-59 (125)
142 COG3027 zapA Cell division pro 26.3 1.2E+02 0.0026 26.0 4.5 33 126-158 62-98 (105)
143 PRK14144 heat shock protein Gr 26.2 2.1E+02 0.0045 27.5 6.5 39 120-158 54-92 (199)
144 PF07889 DUF1664: Protein of u 26.0 1.5E+02 0.0032 26.4 5.2 40 120-159 84-123 (126)
145 PF10498 IFT57: Intra-flagella 25.9 1.6E+02 0.0035 30.5 6.2 15 81-97 211-225 (359)
146 PF06295 DUF1043: Protein of u 25.9 2.2E+02 0.0047 25.0 6.2 38 120-157 27-64 (128)
147 PF09486 HrpB7: Bacterial type 25.7 3.3E+02 0.0072 25.1 7.5 52 101-158 75-126 (158)
148 PRK14160 heat shock protein Gr 25.7 2.4E+02 0.0051 27.3 6.8 39 120-158 70-108 (211)
149 PRK14140 heat shock protein Gr 25.5 2.2E+02 0.0047 27.0 6.5 39 120-158 46-84 (191)
150 PF12761 End3: Actin cytoskele 25.5 68 0.0015 30.7 3.1 22 122-143 100-121 (195)
151 PF05529 Bap31: B-cell recepto 25.5 56 0.0012 30.2 2.6 21 121-141 157-177 (192)
152 PF10186 Atg14: UV radiation r 25.3 3.7E+02 0.0081 25.7 8.4 44 98-141 64-107 (302)
153 PF07531 TAFH: NHR1 homology t 25.0 1E+02 0.0023 26.2 3.8 41 98-139 42-82 (96)
154 KOG4403 Cell surface glycoprot 24.8 1.6E+02 0.0034 31.7 5.8 65 76-140 196-274 (575)
155 PF11572 DUF3234: Protein of u 24.7 18 0.0004 30.7 -0.7 53 211-267 2-54 (103)
156 PRK11637 AmiB activator; Provi 24.7 2.1E+02 0.0046 29.8 6.9 48 101-148 79-126 (428)
157 PRK14145 heat shock protein Gr 24.4 2.3E+02 0.0051 27.0 6.5 39 120-158 54-92 (196)
158 PRK00464 nrdR transcriptional 24.4 55 0.0012 30.0 2.2 30 258-287 2-40 (154)
159 PRK10884 SH3 domain-containing 24.3 1.5E+02 0.0032 28.4 5.2 38 120-157 95-132 (206)
160 PF05837 CENP-H: Centromere pr 24.2 2.6E+02 0.0055 23.8 6.1 51 93-143 23-76 (106)
161 COG4420 Predicted membrane pro 24.2 77 0.0017 30.2 3.1 42 98-146 135-176 (191)
162 PRK06342 transcription elongat 23.8 1.4E+02 0.003 27.4 4.7 40 120-159 36-77 (160)
163 PRK14873 primosome assembly pr 23.7 37 0.00079 38.0 1.1 44 241-285 370-420 (665)
164 PF11559 ADIP: Afadin- and alp 23.7 4.7E+02 0.01 23.1 8.0 56 99-154 82-137 (151)
165 PRK09634 nusB transcription an 23.5 1.1E+02 0.0024 29.3 4.2 37 121-158 43-79 (207)
166 PRK14153 heat shock protein Gr 23.2 2.5E+02 0.0055 26.7 6.5 39 120-158 42-80 (194)
167 PF11464 Rbsn: Rabenosyn Rab b 23.0 82 0.0018 22.9 2.4 23 114-136 18-40 (42)
168 PRK13723 conjugal transfer pil 22.5 3.1E+02 0.0067 29.5 7.6 43 124-166 390-439 (451)
169 COG5570 Uncharacterized small 22.5 1.3E+02 0.0029 23.0 3.5 42 101-142 16-57 (57)
170 PF01025 GrpE: GrpE; InterPro 22.3 1.8E+02 0.0039 25.9 5.1 42 117-158 17-58 (165)
171 PRK11088 rrmA 23S rRNA methylt 21.7 54 0.0012 31.7 1.8 34 258-295 4-39 (272)
172 PF14257 DUF4349: Domain of un 21.6 2.4E+02 0.0053 27.2 6.2 37 108-144 149-188 (262)
173 KOG2129 Uncharacterized conser 21.5 5.3E+02 0.011 27.8 8.8 37 122-158 289-330 (552)
174 PF14446 Prok-RING_1: Prokaryo 21.5 42 0.00091 25.7 0.7 35 258-295 7-46 (54)
175 TIGR01206 lysW lysine biosynth 21.4 77 0.0017 24.1 2.1 30 257-286 3-33 (54)
176 PF06698 DUF1192: Protein of u 21.3 1.3E+02 0.0029 23.4 3.4 24 117-140 20-43 (59)
177 smart00531 TFIIE Transcription 21.3 33 0.00072 30.7 0.1 29 258-286 101-134 (147)
178 PF10276 zf-CHCC: Zinc-finger 21.0 1.4E+02 0.003 21.5 3.2 12 274-285 28-39 (40)
179 PRK11546 zraP zinc resistance 20.8 2E+02 0.0043 26.2 5.0 45 99-143 70-114 (143)
180 PF10234 Cluap1: Clusterin-ass 20.8 3.8E+02 0.0082 26.9 7.4 53 104-157 169-221 (267)
181 KOG1594 Uncharacterized enzyme 20.6 1.3E+02 0.0028 30.3 4.1 58 17-74 60-118 (305)
182 PF14430 Imm1: Immunity protei 20.5 2.2E+02 0.0049 24.5 5.2 56 25-82 52-110 (127)
183 PF15567 Imm19: Immunity prote 20.3 61 0.0013 26.9 1.5 47 213-260 30-77 (88)
184 PF08826 DMPK_coil: DMPK coile 20.1 3.3E+02 0.0072 21.3 5.4 30 129-158 15-44 (61)
No 1
>PLN02281 chlorophyllide a oxygenase
Probab=100.00 E-value=7.2e-118 Score=922.54 Aligned_cols=386 Identities=72% Similarity=1.232 Sum_probs=358.0
Q ss_pred Cc-hhhhhhccccccccc--cccccccccccccceEEEEEecCCCccccccCceeeeeeecCCCCCCCCcCCceeehhhH
Q 015956 1 MT-AIATAAALSLPISLY--RPAKINTKKSVRGGFRVFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDVNQA 77 (397)
Q Consensus 1 ~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (397)
|| +++|+++||||+||+ ++++|++||||+|||+||||||||+|+++|||.|++||||||||+++|++||||||||||
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (536)
T PLN02281 1 MNAAVFSPSALSLPISFSKTRSSFLSRKKGVKGEFRVFAVFGDESGLVEKKSQWRPLFDVEDPRSKAPPYKGKFLDVNQA 80 (536)
T ss_pred CCccccchhhhccChhhhcccccccccccccCCceEEEEEEcccccccccccCceEeeeccCCCccCcccccccccHHHH
Confidence 67 499999999999999 889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcccccccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHH
Q 015956 78 LEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (397)
Q Consensus 78 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~ 157 (397)
|||+||||||||||||||+||||.||+||||||||||||||||||||||||||||||+|||+|||+||+||++|||||++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (536)
T PLN02281 81 IEVARFDIQYLDWRARQDLLTIMILHDKVVDVLNPLAREYKSIGTVKKELAGLQEELSKAHQQVHISEARVSTALDKLAH 160 (536)
T ss_pred HHHHHhhhhcccchhhhhHHHHHHHhHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCcccc-ccccCCCCCCchhhhhhhcCCCCCcccccCCCCCcchhcccceEEeeecCCCCCCCceeEe
Q 015956 158 MEALVNDRLLQDRHTSGT-DQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFD 236 (397)
Q Consensus 158 ~~~~~r~r~l~~ssaat~-~~asa~~~tS~e~~~~~~~~~~~~sl~v~~~~~~~~~~~~~~W~~Va~ssdL~~G~~~~v~ 236 (397)
||.|||+|+|+++|.+.+ .|++..++++ ...+....+++++++++++|.+||...++|.||+||.++||++|+++.++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~P~~~~lrn~Wy~Va~s~EL~~g~~~~v~ 239 (536)
T PLN02281 161 MEELVNDRLLPGRVVTELDKPSSSTTASA-VELDREKTNTGAKSLNVSGPVPPYSPHLKNFWYPVAFTADLKHDTMVPIE 239 (536)
T ss_pred HHHHhhhhccCCCccccccccccCCcCcc-hhhhhhhcccccccccccCCCCCcchhhhcccEEEEEHHHCCCCCeEEEE
Confidence 999999999998655544 5666665554 66677888889999999999999999999999999999999999999999
Q ss_pred eCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCCCcccccCCccccceEEEcCEE
Q 015956 237 CFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMI 316 (397)
Q Consensus 237 i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e~~G~I 316 (397)
++|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|..+....++++|||++++|+|
T Consensus 240 llG~~IVL~R~~dG~v~A~~D~CPHRgaPLs~G~v~g~~L~CPYHGW~FD~dG~cv~iP~~~~~~~~l~sYPV~e~~GlV 319 (536)
T PLN02281 240 CFEQPWVIFRGEDGKPGCVRNTCAHRACPLDLGTVNEGRIQCPYHGWEYSTDGECKKMPSTKLLKVKIKSLPCLEQEGMI 319 (536)
T ss_pred ECCEEEEEEECCCCeEEEEeCcCcCCCCccccceeeCCEEEeCCCCCEECCCCCEeeCCCCccccCCcceEeEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999999999876556789999999999999
Q ss_pred EEeCCCCCCCCCCCCCCCCCCceEeEEEEEEEecChhhHHHhhcCCCCCCccCcccccCCCCCcceeEeee
Q 015956 317 WIWPGDEPPTATIPCLLPPSGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPRFVKLMI 387 (397)
Q Consensus 317 wV~l~~~~p~~~lp~l~~~~g~~~~~~~~~~~~~NWKl~vEN~lD~yH~p~vH~~tf~~g~~vp~~v~f~~ 387 (397)
|||++++++.+.+|.+..+.++.......++++|||++++||++|.||++|+|++++++++..|..+++.+
T Consensus 320 wV~lgd~~~aP~~p~ld~p~~~~~~~~~~~~~~~nwkllvENllD~~H~~fvH~~t~g~~~~~p~~v~~~~ 390 (536)
T PLN02281 320 WIWPGDEPPAPILPSLQPPSGFLIHAELVMDLPVEHGLLLDNLLDLAHAPFTHTSTFAKGWSVPSLVKFLT 390 (536)
T ss_pred EEEeCCCCCCCCCccccCcccceEEEEEEEEecCCHHHHHHhccccccccccCcccccCcccCCceeEEec
Confidence 99998765555566665544666555567889999999999999999999999999999999998887764
No 2
>PLN02518 pheophorbide a oxygenase
Probab=100.00 E-value=1.4e-35 Score=311.65 Aligned_cols=165 Identities=24% Similarity=0.589 Sum_probs=138.5
Q ss_pred cchhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEc-CCCcEEEEeecCCCCCCCCCCCccc-ceeEEccccCeEEcC
Q 015956 210 YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYST 287 (397)
Q Consensus 210 ~~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~-~dG~i~A~~N~CPHRGa~Ls~G~v~-~~~L~CPyHGW~Fd~ 287 (397)
....|++.||+||.++||++|++..++++|+++||||+ .+|+++||+|+|||||++|+.|.++ ++.|+||||||+||.
T Consensus 83 ~~f~~~~~Wy~Va~~~dL~~g~p~~~~llG~~lVl~Rd~~~G~~~A~~d~CPHRgapLS~G~v~~~g~L~CpYHGW~Fd~ 162 (539)
T PLN02518 83 SKFSWRDHWYPVSLVEDLDPSVPTPFQLLGRDLVLWKDPNQGEWVAFDDKCPHRLAPLSEGRIDENGHLQCSYHGWSFDG 162 (539)
T ss_pred hhhhhhhhCEEEEEHHHCCCCCeEEEEECCEEEEEEEECCCCeEEEEcccCcCcCCCcccceecCCCEEEcCCCCCEEcC
Confidence 34588999999999999998999999999999999998 8999999999999999999999985 679999999999999
Q ss_pred CCccccCCCccc----------ccCCccccceEEEcCEEEEeCCCCC----CCCCCCCCC---CCCCceEeEEEEEEEec
Q 015956 288 DGKCEKMPSTQL----------RNVKIKSLPCFEQEGMIWIWPGDEP----PTATIPCLL---PPSGFEIHAEIVMELPI 350 (397)
Q Consensus 288 dG~~~~vP~~~~----------~~~~L~~ypV~e~~G~IwV~l~~~~----p~~~lp~l~---~~~g~~~~~~~~~~~~~ 350 (397)
+|+|+.+|.... ...++++|||++++|+||||++++. +...+|.+. +..+|... ....++++
T Consensus 163 ~G~c~~IP~~~~~~~~~~~~~~~~a~v~sypv~e~~GlIwV~~~~~~~~~a~~~~~P~~~~~~~~~~~~~~-~~~~~~~~ 241 (539)
T PLN02518 163 CGSCTRIPQAAPEGPEARAVKSPRACAIKFPTMVSQGLLFVWPDENGWERAQATKPPMLPDEFDDPEFSTV-TIQRDLFY 241 (539)
T ss_pred CCCeeecccccccccccccccCcccccceEeEEEECCEEEEEeCCccccccccccCCCCcccccCCCceeE-EEEEEEec
Confidence 999999996421 1346899999999999999998652 122344332 22344322 23557899
Q ss_pred ChhhHHHhhcCCCCCCccCcccccC
Q 015956 351 EHGLLLDNLLDLAHAPFTHTSTFAK 375 (397)
Q Consensus 351 NWKl~vEN~lD~yH~p~vH~~tf~~ 375 (397)
+|++++||++|.+|++|+|++++|+
T Consensus 242 ~~~~l~EN~lD~sH~pfvH~~~~G~ 266 (539)
T PLN02518 242 GYDTLMENVSDPSHIDFAHHKVTGR 266 (539)
T ss_pred CchhHHHhCCccchhceeccccccC
Confidence 9999999999999999999999886
No 3
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=100.00 E-value=3.4e-35 Score=295.28 Aligned_cols=181 Identities=40% Similarity=0.891 Sum_probs=153.7
Q ss_pred chhcccceEEeeecCCC-CCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCC
Q 015956 211 NTRLKNFWFPVAFSTDL-KDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDG 289 (397)
Q Consensus 211 ~~~~~~~W~~Va~ssdL-~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG 289 (397)
+...++.||+|++++|| ++|+++.++++|++|+|+|+.+|+++|+.|.|||||++|+.|.++++.|+||||||+||.+|
T Consensus 66 ~~~~r~~WypVa~ssdL~~~g~~~~f~L~GepIVL~Rd~dGqv~Af~N~CPHRGapLSeG~v~~g~L~CPYHGW~FD~~G 145 (394)
T PLN00095 66 TADARAHWFPVAFAAGLRDEDALIAFDLFNVPWVLFRDADGEAGCIKDECAHRACPLSLGKLVDGKAQCPYHGWEYETGG 145 (394)
T ss_pred CCchhcCeEEEEEHHHCCCCCceEEEEECCEEEEEEECCCCCEEEEeccCCCCCCccccCcccCCEEEecCCCcEECCCC
Confidence 34568899999999999 68999999999999999999899999999999999999999999999999999999999999
Q ss_pred ccccCCCccc--ccCCccccceEEEcCEEEEeCCCCCCCC------------------CCCC-CCCCCCceEeEEEEEEE
Q 015956 290 KCEKMPSTQL--RNVKIKSLPCFEQEGMIWIWPGDEPPTA------------------TIPC-LLPPSGFEIHAEIVMEL 348 (397)
Q Consensus 290 ~~~~vP~~~~--~~~~L~~ypV~e~~G~IwV~l~~~~p~~------------------~lp~-l~~~~g~~~~~~~~~~~ 348 (397)
+|+.+|..+. .+.++++|||++++|+||||+++..|.. ..|. +.++++|..+.+...++
T Consensus 146 ~C~~iP~~~~~~~~~~v~tYPV~e~dGlVwVw~G~~~p~dflg~~~~~e~~~~~~~~~~~P~~~~~~~gf~~~aev~~Dl 225 (394)
T PLN00095 146 ECAKMPSCKKFLKGVFADAAPVIERDGFIFLWAGESDPADFVGPEAACESIDDDVLAANEPGMFAPGEGFTPMAEVIADI 225 (394)
T ss_pred CEeeCCCccccccccccceEEEEEECCEEEEEeCCcchhhhccccccccccccchhhccCCcccCCCCCceEEEEEEEec
Confidence 9999997532 2356899999999999999998754431 2343 44556888877777899
Q ss_pred ecChhhHHHhhcCCCC-CCccCccccc----C---------------------CC-CCcceeEeeehhhh
Q 015956 349 PIEHGLLLDNLLDLAH-APFTHTSTFA----K---------------------GW-SVPRFVKLMIITVA 391 (397)
Q Consensus 349 ~~NWKl~vEN~lD~yH-~p~vH~~tf~----~---------------------g~-~vp~~v~f~~~~~~ 391 (397)
++.|.+++||+||..| .||+|+.||. + .| .+|..+.|.+||..
T Consensus 226 p~d~~~L~ENllD~aH~a~~~~t~tf~~~~~~r~~~~~~~~~~~~~~~~~l~g~~~~~p~~~~F~ppc~~ 295 (394)
T PLN00095 226 KLDADEVLERLLAIGERARREATVSFDVSDAKRGRDALFPVDGTKIIAKVLRGGRDAVPQSATFKPACVI 295 (394)
T ss_pred cccHHHHHHhhcCccccCCccCceeeecccccccccCccchhhhhhhhhhheeecccCCcceeEcCceee
Confidence 9999999999999999 6999988884 1 23 46777778887754
No 4
>COG4638 HcaE Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases, large terminal subunit [Inorganic ion transport and metabolism / General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=295.12 Aligned_cols=168 Identities=32% Similarity=0.602 Sum_probs=139.8
Q ss_pred cchhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccc-eeEEccccCeEEcCC
Q 015956 210 YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTD 288 (397)
Q Consensus 210 ~~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~-~~L~CPyHGW~Fd~d 288 (397)
+..+|.+.||+||+++||+++++.++.++|+++||+|+.||+++||.|.|||||++|+.|.+.+ +.|+||||||+||.+
T Consensus 20 ~~~~~~~~Wy~v~~~~el~~~~~~~~~i~g~~lvi~R~~dg~~~al~d~C~HRga~Ls~g~~~~~~~l~CpyHgW~y~~~ 99 (367)
T COG4638 20 LERIFYKHWYVVAHSSELPKPDPLTVRIGGEPLVVVRDKDGQVHALADVCPHRGARLSEGRVGGKGRLTCPYHGWTYDLD 99 (367)
T ss_pred HHHhhhhCEEEEccHHHCCCCCceeEEEcCeEEEEEECCCCCEEEEeccCCCCCchhccccCCCCceEecCCCceEECCC
Confidence 3456777999999999999889999999999999999999999999999999999999999988 899999999999999
Q ss_pred CccccCCC--cc-cc---cCCccccceEEEcCEEEEeCCCCCCCC-C--CCCCC-CCCCceEe-EEEEEEEecChhhHHH
Q 015956 289 GKCEKMPS--TQ-LR---NVKIKSLPCFEQEGMIWIWPGDEPPTA-T--IPCLL-PPSGFEIH-AEIVMELPIEHGLLLD 357 (397)
Q Consensus 289 G~~~~vP~--~~-~~---~~~L~~ypV~e~~G~IwV~l~~~~p~~-~--lp~l~-~~~g~~~~-~~~~~~~~~NWKl~vE 357 (397)
|+|+.+|. .. .. ...+++||++++.|+||||++++++.. . .|... ....+... ......+++|||.++|
T Consensus 100 G~~~~ip~~~~~~~~~~~~~~l~~~~~~~~~G~Iwi~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~nwk~~vE 179 (367)
T COG4638 100 GRLRGVPARGYPLDFDKSEHGLKRYPVEERYGFIWIWLGDPPPAAEAFLPPAEPYEDDRSRLGGGSFTINVPGNWKLAVE 179 (367)
T ss_pred CcEecCCccccCCCCCHhhCCccccceEEEccEEEEecCCCccChhHhcccccccccccccccCceEEEEecccceEEee
Confidence 99999994 22 12 257999999999999999999876431 1 12222 22222222 4567788999999999
Q ss_pred hhcC-CCCCCccCcccccCCC
Q 015956 358 NLLD-LAHAPFTHTSTFAKGW 377 (397)
Q Consensus 358 N~lD-~yH~p~vH~~tf~~g~ 377 (397)
|++| +||++++|+++++...
T Consensus 180 n~~d~~~H~~~vH~~~~~~~~ 200 (367)
T COG4638 180 NNLDDPYHVPFVHPGLLGTEP 200 (367)
T ss_pred ccCCccccccccCHHHhcccc
Confidence 8887 9999999998887654
No 5
>TIGR03228 anthran_1_2_A anthranilate 1,2-dioxygenase, large subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the large subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase large subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=100.00 E-value=8.8e-35 Score=299.39 Aligned_cols=165 Identities=19% Similarity=0.339 Sum_probs=137.8
Q ss_pred CcchhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCC-CcccceeEEccccCeEEc
Q 015956 209 PYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYS 286 (397)
Q Consensus 209 ~~~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~-G~v~~~~L~CPyHGW~Fd 286 (397)
.+..+|.+.|++||++++|+ +|+++++.+++++|+|+|+.+|+++||.|+|||||++|+. +.++...|+||||||+||
T Consensus 30 E~~~IF~~~W~~v~h~selp~~GDy~t~~ig~~pviv~R~~dG~i~a~~N~C~HRGa~L~~~~~Gn~~~~~CPYHgW~y~ 109 (438)
T TIGR03228 30 EMELIFEKNWIYACHESELPNNHDFVTVRAGRQPMIVTRDGKGELHALVNACQHRGATLTRVGKGNQSTFTCPFHAWCYK 109 (438)
T ss_pred HHHHHHhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEcccCCCCCCccccCCccccCEEEcCCCCCccc
Confidence 34567889999999999998 5999999999999999999999999999999999999996 777888999999999999
Q ss_pred CCCccccCCCccc-------ccCCccccceEEEcCEEEEeCCCCCCCCCCCCCCC--------------CCCceEe-EEE
Q 015956 287 TDGKCEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP--------------PSGFEIH-AEI 344 (397)
Q Consensus 287 ~dG~~~~vP~~~~-------~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l~~--------------~~g~~~~-~~~ 344 (397)
.+|+|+++|.... ...+|++++|.+++|+||+++++++++ +++++++ ..++++. +..
T Consensus 110 ~dG~L~~vp~~~~y~~~fd~~~~~L~~~rv~~y~GfIFv~l~~~a~~-~l~e~lg~~~~~ld~~~~~~~~g~le~~~~~~ 188 (438)
T TIGR03228 110 SDGRLVKVKAPGEYCEGFDKATRGLKKARIASYRGFVFVSLDVAATD-SLEDFLGDARVFLDMMVAQSPTGELEVLPGKS 188 (438)
T ss_pred CCCceeecCcccccCCCCChhhCCCcceeEEEECCEEEEEeCCCCCC-CHHHHhhhHHHHHHHHhhccCcCceEEecceE
Confidence 9999999985421 235788899999999999999876421 2333321 1124433 345
Q ss_pred EEEEecChhhHHHhhcCCCCCCccCccccc
Q 015956 345 VMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (397)
Q Consensus 345 ~~~~~~NWKl~vEN~lD~yH~p~vH~~tf~ 374 (397)
.+.++||||+.+||++|+||++++|+++++
T Consensus 189 ~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~ 218 (438)
T TIGR03228 189 AYTYAGNWKLQNENGLDGYHVSTVHYNYVA 218 (438)
T ss_pred EEEeCCchHHHHHhccccccchhhChhhHh
Confidence 778999999999999999999999988764
No 6
>TIGR03229 benzo_1_2_benA benzoate 1,2-dioxygenase, large subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family all act on benzoate, but may have additional activities on various benozate analogs. This model describes the large subunit. Between the trusted and noise cutoffs are similar enzymes, likely to act on benzoate but perhaps best identified according to some other activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=100.00 E-value=2.1e-33 Score=289.04 Aligned_cols=164 Identities=21% Similarity=0.306 Sum_probs=134.7
Q ss_pred cchhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc-ccceeEEccccCeEEcC
Q 015956 210 YNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYST 287 (397)
Q Consensus 210 ~~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~-v~~~~L~CPyHGW~Fd~ 287 (397)
+..+|.+.|++||+.++|+ +|+++++.+++++|+|+|+.+|+++||.|+|||||++|+.|. ++.+.|+||||||+||.
T Consensus 31 ~~~IF~~~W~~v~~~selp~~gd~~t~~~~~~~vvv~R~~dG~i~af~N~C~HRga~L~~~~~g~~~~~~CPyHgW~f~~ 110 (433)
T TIGR03229 31 MKHIFEGNWIYLAHESQIPNNNDYYTTYMGRQPIFIARNKDGELNAFINACSHRGAMLCRHKRGNKTTYTCPFHGWTFNN 110 (433)
T ss_pred HHHHhhhCCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCcEEEEeCcCCCCCCCcccccccCCCEEEcCCCCCEecC
Confidence 3457888999999999998 689999999999999999999999999999999999999864 45679999999999999
Q ss_pred CCccccCCCccc----------ccCCccccc-eEEEcCEEEEeCCCCCCCCCCCCCCC-------------CCCceEe-E
Q 015956 288 DGKCEKMPSTQL----------RNVKIKSLP-CFEQEGMIWIWPGDEPPTATIPCLLP-------------PSGFEIH-A 342 (397)
Q Consensus 288 dG~~~~vP~~~~----------~~~~L~~yp-V~e~~G~IwV~l~~~~p~~~lp~l~~-------------~~g~~~~-~ 342 (397)
+|+|+++|.... ...+|.+++ ++.++|+||++++++.|+ ++++++ +.++... +
T Consensus 111 ~G~l~~vP~~~~~~~~~~fd~~~~~~L~~v~rve~y~GfIFv~l~~~~~~--l~e~Lg~~~~~ld~~~~~~~~~~~~~~~ 188 (433)
T TIGR03229 111 SGKLLKVKDPEDAGYPECFNKDGSHDLKKVARFESYRGFLFGSLNPDVLP--LEEHLGETAKIIDMIVDQSPDGLEVLRG 188 (433)
T ss_pred CcceEeCCCcccccCccccCcHhhcCCccceEEEEECCEEEEEcCCCCCC--HHHHhhhHHHHHHHHhhcCcCCCeEEee
Confidence 999999987321 135789996 666799999999877543 333322 1233332 3
Q ss_pred EEEEEEecChhhHHHhhcCCCCCCccCcccccC
Q 015956 343 EIVMELPIEHGLLLDNLLDLAHAPFTHTSTFAK 375 (397)
Q Consensus 343 ~~~~~~~~NWKl~vEN~lD~yH~p~vH~~tf~~ 375 (397)
...+.++||||+++||++|+||++++|++++..
T Consensus 189 ~~~~~~~~NWKl~~EN~~D~YH~~~vH~~~~~~ 221 (433)
T TIGR03229 189 SSTYTYEGNWKLQAENGADGYHVSAVHWNYAAT 221 (433)
T ss_pred eEEEEecCchhhhHHhccCcccchhhcccHHHh
Confidence 457889999999999999999999999776643
No 7
>cd04337 Rieske_RO_Alpha_Cao Cao (chlorophyll a oxygenase) is a rieske non-heme iron-sulfur protein located within the plastid-envelope inner and thylakoid membranes, that catalyzes the conversion of chlorophyllide a to chlorophyllide b. CAO is found not only in plants but also in chlorophytes and prochlorophytes. This domain represents the N-terminal rieske domain of the oxygenase alpha subunit. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Cao is closely related to several other plant RO's including Tic 55, a 55 kDa protein associated with protein transport through the inner
Probab=99.97 E-value=7.5e-31 Score=229.43 Aligned_cols=123 Identities=65% Similarity=1.381 Sum_probs=113.5
Q ss_pred ccCCCCCcchhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccC
Q 015956 203 VSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHG 282 (397)
Q Consensus 203 v~~~~~~~~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHG 282 (397)
+.++..++...|++.|++|+++++|++|+++.++++|++++|+|+.+|+++|+.|.|||+|++|+.|.+.++.|+|||||
T Consensus 3 ~~~~~~~~~~~~~~~W~~v~~~~el~~g~~~~~~v~g~~l~l~r~~~g~v~A~~n~CpH~g~~L~~G~~~~~~i~CP~Hg 82 (129)
T cd04337 3 VLGSSLELEPGLRNFWYPVEFSKDLKMDTMVPFELFGQPWVLFRDEDGTPGCIRDECAHRACPLSLGKVIEGRIQCPYHG 82 (129)
T ss_pred ccccCccccchhhCccEEEEEHHHCCCCCeEEEEECCcEEEEEECCCCcEEEEeCcCCCCcCCcccCcEeCCEEEeCCCC
Confidence 45667789999999999999999999999999999999999999889999999999999999999999989999999999
Q ss_pred eEEcCCCccccCCCcccccCCccccceEEEcCEEEEeCCCCCC
Q 015956 283 WEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (397)
Q Consensus 283 W~Fd~dG~~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l~~~~p 325 (397)
|+||.+|+|+..|..+....+|++||+++++|+|||++++++|
T Consensus 83 w~Fd~tG~~~~~P~~~~~~~~l~~y~v~v~~g~V~V~~~~~~p 125 (129)
T cd04337 83 WEYDGDGECTKMPSTKCLNVGIAALPCMEQDGMIWVWPGDDPP 125 (129)
T ss_pred CEECCCCCEEeCCcCCCccCCcceEeEEEECCEEEEEcCCCCC
Confidence 9999999999999765344689999999999999999987644
No 8
>cd03479 Rieske_RO_Alpha_PhDO_like Rieske non-heme iron oxygenase (RO) family, Phthalate 4,5-dioxygenase (PhDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of PhDO and similar proteins including 3-chlorobenzoate 3,4-dioxygenase (CBDO), phenoxybenzoate dioxygenase (POB-dioxygenase) and 3-nitrobenzoate oxygenase (MnbA). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PhDO and CBDO are two-component RO systems, containing oxygenase and reductase components. PhDO catalyzes the dihydroxylation of phthalate to form th
Probab=99.96 E-value=5.5e-30 Score=227.58 Aligned_cols=130 Identities=33% Similarity=0.714 Sum_probs=115.8
Q ss_pred ccCCCCCcchhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEcccc
Q 015956 203 VSGPVQPYNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYH 281 (397)
Q Consensus 203 v~~~~~~~~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyH 281 (397)
..||..|+...+++.|++|+.+++|+ +|+++.+++.|.+++|+|+.+|+++|+.|+|||||++|+.|.+.++.|+||||
T Consensus 7 ~~~~~~~~~~~~~~~W~~v~~~~eL~~~g~~~~~~~~g~~i~v~r~~~G~v~A~~n~CpHrG~~L~~G~~~~~~i~CP~H 86 (144)
T cd03479 7 RVGPGTPMGELLRRYWQPVALSSELTEDGQPVRVRLLGEDLVAFRDTSGRVGLLDEHCPHRGASLVFGRVEECGLRCCYH 86 (144)
T ss_pred ecCCCCchhhHhhCceEEEEEHHHCCCCCCEEEEEECCcEEEEEEeCCCCEEEEcCcCCCCCCcccCCcccCCEEEccCC
Confidence 45777899999999999999999999 69999999999999999988999999999999999999999998899999999
Q ss_pred CeEEcCCCccccCCCccc-----ccCCccccceEEEcCEEEEeCCCCCCCCCCCCC
Q 015956 282 GWEYSTDGKCEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCL 332 (397)
Q Consensus 282 GW~Fd~dG~~~~vP~~~~-----~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l 332 (397)
||+||.+|+|+.+|..+. ...+|++|+|++++|+|||++++..+++++|++
T Consensus 87 gw~F~~~G~~~~~P~~~~~~~~~~~~~l~~~~v~~~~G~I~V~~~~~~~~p~~~~~ 142 (144)
T cd03479 87 GWKFDVDGQCLEMPSEPPDSQLKQKVRQPAYPVRERGGLVWAYMGPAEEAPEFPRY 142 (144)
T ss_pred CcEECCCCCEEECCCCccccCCccccCcceEeEEEECCEEEEECCCCCCCCCCCCC
Confidence 999999999999997542 235799999999999999999864444445543
No 9
>cd04338 Rieske_RO_Alpha_Tic55 Tic55 is a 55kDa LLS1-related non-heme iron oxygenase associated with protein transport through the plant inner chloroplast membrane. This domain represents the N-terminal Rieske domain of the Tic55 oxygenase alpha subunit. Tic55 is closely related to the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO), Ptc52, and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis.
Probab=99.96 E-value=1.5e-29 Score=222.40 Aligned_cols=116 Identities=29% Similarity=0.832 Sum_probs=105.2
Q ss_pred chhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCc
Q 015956 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 290 (397)
Q Consensus 211 ~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~ 290 (397)
...|++.|++|+.++||++|....++++|++|+|+|+.+|+++|++|.|||||++|+.|.+.++.|+||||||+||.+|+
T Consensus 11 ~~~~~~~W~~v~~~~el~~~~~~~~~v~g~~ivl~r~~~G~v~A~~n~CpHrga~L~~G~~~~~~i~CP~Hgw~Fd~~G~ 90 (134)
T cd04338 11 EYDWREEWYPLYLLKDVPTDAPLGLSVYDEPFVLFRDQNGQLRCLEDRCPHRLAKLSEGQLIDGKLECLYHGWQFGGEGK 90 (134)
T ss_pred ccccccCcEEEEEHHHCCCCCCEEEEECCceEEEEEcCCCCEEEEcCcCCCCcCcccCCeecCCEEEccCCCCEECCCCC
Confidence 34789999999999999998899999999999999988999999999999999999999999999999999999999999
Q ss_pred cccCCCccc-----ccCCccccceEEEcCEEEEeCCCCCCC
Q 015956 291 CEKMPSTQL-----RNVKIKSLPCFEQEGMIWIWPGDEPPT 326 (397)
Q Consensus 291 ~~~vP~~~~-----~~~~L~~ypV~e~~G~IwV~l~~~~p~ 326 (397)
|+.+|.... ...+|++|||++++|+|||++++.+|+
T Consensus 91 ~~~~P~~~~~~~~~~~~~l~~y~v~~~~G~V~V~~~~~~~~ 131 (134)
T cd04338 91 CVKIPQLPADAKIPKNACVKSYEVRDSQGVVWMWMSEATPP 131 (134)
T ss_pred EEECCCCCccCCCCcccCcceEeEEEECCEEEEEcCCCCCC
Confidence 999987531 235699999999999999999876543
No 10
>cd03537 Rieske_RO_Alpha_PrnD This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit of aminopyrrolnitrin oxygenase (PrnD). PrnD is a novel Rieske N-oxygenase that catalyzes the final step in the pyrrolnitrin biosynthetic pathway, the oxidation of the amino group in aminopyrrolnitrin to a nitro group, forming the antibiotic pyrrolnitrin. The biosynthesis of pyrrolnitrin is one of the best examples of enzyme-catalyzed arylamine oxidation. Although arylamine oxygenases are widely distributed within the microbial world and used in a variety of metabolic reactions, PrnD represents one of only two known examples of arylamine oxygenases or N-oxygenases involved in arylnitro group formation, the other being AurF involved in aureothin biosynthesis.
Probab=99.96 E-value=3e-29 Score=218.19 Aligned_cols=110 Identities=33% Similarity=0.729 Sum_probs=100.1
Q ss_pred cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCC
Q 015956 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295 (397)
Q Consensus 216 ~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP 295 (397)
..||+|+.++||+ ++++.+++.|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+|+.+|
T Consensus 2 ~~W~~v~~~~~l~-~~~~~~~~~g~~ivl~r~~~g~v~a~~n~CpHrg~~Ls~G~v~~~~l~CpyHGw~Fd~~G~~~~iP 80 (123)
T cd03537 2 ASWYVAMRSDDLK-DKPTELTLFGRPCVAWRGATGRAVVMDRHCSHLGANLADGRVKDGCIQCPFHHWRYDEQGQCVHIP 80 (123)
T ss_pred CcEEEEEEHHHcC-CCcEEEEECCeEEEEEEccCCEEEEEcCCCCCCCCCccCCEEeCCEEECCCCCCEECCCCCEEECC
Confidence 4799999999996 678999999999999999899999999999999999999999999999999999999999999999
Q ss_pred Cccc---------ccCCccccceEEEcCEEEEeCCCCCCC
Q 015956 296 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPPT 326 (397)
Q Consensus 296 ~~~~---------~~~~L~~ypV~e~~G~IwV~l~~~~p~ 326 (397)
.... ...++++|||+|++|+||||++++.|.
T Consensus 81 ~~~~~~~~~~~~p~~~~~~~~pv~e~~G~Vwv~~g~~~~~ 120 (123)
T cd03537 81 GHSTAVRRLEPVPRGARQPTLVTAERYGYVWVWYGSPQPL 120 (123)
T ss_pred CCcccccccccCCcccccccEeEEEECCEEEEEcCCCCcc
Confidence 7432 136799999999999999999876554
No 11
>cd03531 Rieske_RO_Alpha_KSH The alignment model represents the N-terminal rieske iron-sulfur domain of KshA, the oxygenase component of 3-ketosteroid 9-alpha-hydroxylase (KSH). The terminal oxygenase component of KSH is a key enzyme in the microbial steroid degradation pathway, catalyzing the 9 alpha-hydroxylation of 4-androstene-3,17-dione (AD) and 1,4-androstadiene-3,17-dione (ADD). KSH is a two-component class IA monooxygenase, with terminal oxygenase (KshA) and oxygenase reductase (KshB) components. KSH activity has been found in many actino- and proteo- bacterial genera including Rhodococcus, Nocardia, Arthrobacter, Mycobacterium, and Burkholderia.
Probab=99.96 E-value=9.5e-29 Score=211.82 Aligned_cols=109 Identities=25% Similarity=0.635 Sum_probs=101.1
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCCC
Q 015956 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPS 296 (397)
Q Consensus 217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP~ 296 (397)
+|++|+.++||++|+++.+++.|++++|+|+.+|+++|++|+|||||++|+.|.+.++.|+||||||+||.+|+|+.+|.
T Consensus 1 gW~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~ga~L~~G~~~~~~i~CP~Hg~~fd~~G~~~~~p~ 80 (115)
T cd03531 1 GWHCLGLARDFRDGKPHGVEAFGTKLVVFADSDGALNVLDAYCRHMGGDLSQGTVKGDEIACPFHDWRWGGDGRCKAIPY 80 (115)
T ss_pred CcEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCccCcccCCEEECCCCCCEECCCCCEEECCc
Confidence 59999999999999999999999999999988999999999999999999999999999999999999999999999987
Q ss_pred cccc--cCCccccceEEEcCEEEEeCCCCCC
Q 015956 297 TQLR--NVKIKSLPCFEQEGMIWIWPGDEPP 325 (397)
Q Consensus 297 ~~~~--~~~L~~ypV~e~~G~IwV~l~~~~p 325 (397)
.+.. ...+++|||++++|+|||+++++.+
T Consensus 81 ~~~~p~~~~l~~ypv~~~~g~v~v~~~~~~~ 111 (115)
T cd03531 81 ARRVPPLARTRAWPTLERNGQLFVWHDPEGN 111 (115)
T ss_pred ccCCCcccccceEeEEEECCEEEEECCCCCC
Confidence 5432 3578999999999999999987654
No 12
>cd03480 Rieske_RO_Alpha_PaO Rieske non-heme iron oxygenase (RO) family, Pheophorbide a oxygenase (PaO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of a small subfamily of enzymes found in plants as well as oxygenic cyanobacterial photosynthesizers including LLS1 (lethal leaf spot 1, also known as PaO) and ACD1 (accelerated cell death 1). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. PaO expression increases upon physical wounding of plant leaves and is thought to catalyze a key step in chlorophyll degradation. The
Probab=99.95 E-value=2.2e-28 Score=216.16 Aligned_cols=113 Identities=30% Similarity=0.797 Sum_probs=102.0
Q ss_pred hcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcC-CCcEEEEeecCCCCCCCCCCCccc-ceeEEccccCeEEcCCCc
Q 015956 213 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK-DGIPGCVQNTCAHRACPLHLGSVN-EGRIQCPYHGWEYSTDGK 290 (397)
Q Consensus 213 ~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~-dG~i~A~~N~CPHRGa~Ls~G~v~-~~~L~CPyHGW~Fd~dG~ 290 (397)
.|++.|++|+.++||++|+++.+++.|++|+|+|+. +|+++|+.|+|||||++|+.|.+. ++.|+||||||+||.+|+
T Consensus 13 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~dG~~~A~~n~CpHrga~L~~G~~~~~~~i~CP~Hgw~Fd~tG~ 92 (138)
T cd03480 13 DWREVWYPVAYVEDLDPSRPTPFTLLGRDLVIWWDRNSQQWRAFDDQCPHRLAPLSEGRIDEEGCLECPYHGWSFDGSGS 92 (138)
T ss_pred CCccceEEEEEHHHCCCCCcEEEEECCeeEEEEEECCCCEEEEEcCCCcCCcCccccceEcCCCEEEeCCCCCEECCCCC
Confidence 578899999999999999999999999999999986 999999999999999999999875 469999999999999999
Q ss_pred cccCCCccc-------ccCCccccceEEEcCEEEEeCCCCCC
Q 015956 291 CEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (397)
Q Consensus 291 ~~~vP~~~~-------~~~~L~~ypV~e~~G~IwV~l~~~~p 325 (397)
|+.+|.... ...+|++|||++++|+|||+++++++
T Consensus 93 ~~~~P~~~~~g~~~~~~~~~l~~ypv~v~~g~V~V~~~~~~~ 134 (138)
T cd03480 93 CQRIPQAAEGGKAHTSPRACVASLPTAVRQGLLFVWPGEPEN 134 (138)
T ss_pred EEECCCCccccccCCCcccccceEeEEEECCEEEEecCChHh
Confidence 999997532 23679999999999999999986543
No 13
>cd03532 Rieske_RO_Alpha_VanA_DdmC Rieske non-heme iron oxygenase (RO) family, Vanillate-O-demethylase oxygenase (VanA) and dicamba O-demethylase oxygenase (DdmC) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Vanillate-O-demethylase is a heterodimeric enzyme consisting of a terminal oxygenase (VanA) and reductase (VanB) components. This enzyme reductively catalyzes the conversion of vanillate into protocatechuate and formaldehyde. Protocatechuate and vanillate are important intermediate metabolites in the degrad
Probab=99.95 E-value=4.7e-28 Score=207.32 Aligned_cols=109 Identities=36% Similarity=0.826 Sum_probs=100.8
Q ss_pred cccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCcccc
Q 015956 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEK 293 (397)
Q Consensus 214 ~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~ 293 (397)
+.+.|++|+.++||+ |+++.+.+.|++++|+|+.+|+++|++|+|||+|++|+.|.+.++.|+||||||+||.+|+|+.
T Consensus 2 ~~~~W~~v~~~~el~-~~~~~~~~~g~~i~l~r~~~g~~~a~~n~CpH~g~~L~~G~~~~~~i~Cp~Hg~~fd~~G~~~~ 80 (116)
T cd03532 2 PRNAWYVAAWADELG-DKPLARTLLGEPVVLYRTQDGRVAALEDRCPHRSAPLSKGSVEGGGLVCGYHGLEFDSDGRCVH 80 (116)
T ss_pred cCCcEEEEEEHHHcC-CCcEEEEECCceEEEEECCCCCEEEeCCcCCCCCCCccCCcccCCEEEeCCCCcEEcCCCCEEe
Confidence 467899999999999 8999999999999999988999999999999999999999999999999999999999999999
Q ss_pred CCCccc--ccCCccccceEEEcCEEEEeCCCC
Q 015956 294 MPSTQL--RNVKIKSLPCFEQEGMIWIWPGDE 323 (397)
Q Consensus 294 vP~~~~--~~~~L~~ypV~e~~G~IwV~l~~~ 323 (397)
+|..+. ...+|++|||++++|+|||+++++
T Consensus 81 ~p~~~~~~~~~~l~~~~v~~~~g~v~v~~~~~ 112 (116)
T cd03532 81 MPGQERVPAKACVRSYPVVERDALIWIWMGDA 112 (116)
T ss_pred CCCCCCCCCccccccCCEEEECCEEEEEcCCc
Confidence 997642 245799999999999999999764
No 14
>cd03541 Rieske_RO_Alpha_CMO Rieske non-heme iron oxygenase (RO) family, Choline monooxygenase (CMO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. CMO is a novel RO found in certain plants which catalyzes the first step in betaine synthesis. CMO is not found in animals or bacteria. In these organisms, the first step in betaine synthesis is catalyzed by either the membrane-bound choline dehydrogenase (CDH) or the soluble choline oxidase (COX).
Probab=99.95 E-value=1.6e-27 Score=205.85 Aligned_cols=107 Identities=25% Similarity=0.421 Sum_probs=99.0
Q ss_pred ceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCC
Q 015956 217 FWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMP 295 (397)
Q Consensus 217 ~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP 295 (397)
+|++|++++||+ +|++++++++|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||++|+|+.+|
T Consensus 1 ~W~~v~~~~el~~~g~~~~~~~~g~~i~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~i~CP~Hgw~f~l~G~l~~~P 80 (118)
T cd03541 1 GWQVAGYSDQVKEKNQYFTGRLGNVEYVVCRDGNGKLHAFHNVCTHRASILACGSGKKSCFVCPYHGWVYGLDGSLTKAT 80 (118)
T ss_pred CCEEEEEHHHCCCCCCeEEEEECCeEEEEEECCCCCEEEEeCCCCCCcCCccCCccccCEEEeCCCCCEEcCCCeEEeCC
Confidence 599999999999 5788999999999999999999999999999999999999999989999999999999999999999
Q ss_pred Cccc------ccCCccccceEEEcCEEEEeCCCC
Q 015956 296 STQL------RNVKIKSLPCFEQEGMIWIWPGDE 323 (397)
Q Consensus 296 ~~~~------~~~~L~~ypV~e~~G~IwV~l~~~ 323 (397)
.... ...+|.+++|.+++|||||+++++
T Consensus 81 ~~~~~~~~~~~~~~L~~~~~~~~~g~vfv~~~~~ 114 (118)
T cd03541 81 QATGIQNFNPKELGLVPLKVAEWGPFVLISVDRS 114 (118)
T ss_pred CcccccCCCHHHCCCceEeEEEECCEEEEEeCCC
Confidence 8653 236899999999999999999764
No 15
>cd03548 Rieske_RO_Alpha_OMO_CARDO Rieske non-heme iron oxygenase (RO) family, 2-Oxoquinoline 8-monooxygenase (OMO) and Carbazole 1,9a-dioxygenase (CARDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OMO catalyzes the NADH-dependent oxidation of the N-heterocyclic aromatic compound 2-oxoquinoline to 8-hydroxy-2-oxoquinoline, the second step in the bacterial degradation of quinoline. OMO consists of a reductase component (OMR) and an oxygenase component (OMO) that together function to shuttle electrons from the
Probab=99.95 E-value=2.2e-27 Score=208.91 Aligned_cols=110 Identities=32% Similarity=0.652 Sum_probs=98.8
Q ss_pred hcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc--ccceeEEccccCeEEcC-CC
Q 015956 213 RLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-DG 289 (397)
Q Consensus 213 ~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~--v~~~~L~CPyHGW~Fd~-dG 289 (397)
.|++.|++|++++||++|+++.++++|++++|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||+ +|
T Consensus 10 ~~~~~W~~v~~~~el~~g~~~~~~~~g~~i~l~r-~~g~v~A~~n~CpHrg~~L~~g~~~~~~~~i~Cp~Hgw~Fdl~tG 88 (136)
T cd03548 10 GFRNHWYPALFSHELEEGEPKGIQLCGEPILLRR-VDGKVYALKDRCLHRGVPLSKKPECFTKGTITCWYHGWTYRLDDG 88 (136)
T ss_pred CcccCcEEEEEHHHCCCCCeEEEEECCcEEEEEe-cCCEEEEEeCcCcCCCCccccCcccccCCEEEecCCccEEeCCCc
Confidence 7899999999999999999999999999999999 69999999999999999999885 46789999999999996 99
Q ss_pred ccccCCCccc----ccCCccccceEEEcCEEEEeCCCC
Q 015956 290 KCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDE 323 (397)
Q Consensus 290 ~~~~vP~~~~----~~~~L~~ypV~e~~G~IwV~l~~~ 323 (397)
+|+.+|..+. ...+|++|||++++|+|||++++.
T Consensus 89 ~~~~~~~~p~~~~~~~~~L~~ypv~~~~g~V~v~~~~~ 126 (136)
T cd03548 89 KLVTILANPDDPLIGRTGLKTYPVEEAKGMIFVFVGDG 126 (136)
T ss_pred cEEEcccCCCccccccCCCceEeEEEECCEEEEEeCCc
Confidence 9998764332 135799999999999999999764
No 16
>cd03545 Rieske_RO_Alpha_OHBDO_like Rieske non-heme iron oxygenase (RO) family, Ortho-halobenzoate-1,2-dioxygenase (OHBDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of OHBDO, salicylate 5-hydroxylase (S5H), terephthalate 1,2-dioxygenase system (TERDOS) and similar proteins. ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. OHBDO converts 2-chlorobenzoate (2-CBA) to catechol as well as 2,4-dCBA and 2,5-dCBA to 4-chlorocatechol, as part of the chlorobenzoate degradation pathway. Although ortho-substituted chlorobe
Probab=99.95 E-value=1.5e-27 Score=213.73 Aligned_cols=115 Identities=22% Similarity=0.396 Sum_probs=101.6
Q ss_pred chhcc-cceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc-ccceeEEccccCeEEcC
Q 015956 211 NTRLK-NFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYST 287 (397)
Q Consensus 211 ~~~~~-~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~-v~~~~L~CPyHGW~Fd~ 287 (397)
..+|+ +.|++|+++++|+ +|+++.+.++|++|+|+|+.+|+++|+.|+|||||++|+.|. ++++.|+||||||+||+
T Consensus 18 ~~if~~~~W~~v~~~~el~~~g~~~~~~i~g~~iiv~r~~~g~v~A~~n~CpHrg~~L~~g~~g~~~~i~CP~Hgw~Fdl 97 (150)
T cd03545 18 ERIFRGKTWSYVGLEAEIPNAGDFKSTFVGDTPVVVTRAEDGSLHAWVNRCAHRGALVCRERRGNDGSLTCVYHQWAYDL 97 (150)
T ss_pred HhhhCCCceEEEEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEcccCcCCCCEecccccCCCCEEECCCCCCEECC
Confidence 34676 7899999999999 599999999999999999889999999999999999999874 45679999999999999
Q ss_pred CCccccCCCccc-------------ccCCccccceEEEcCEEEEeCCCCCC
Q 015956 288 DGKCEKMPSTQL-------------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (397)
Q Consensus 288 dG~~~~vP~~~~-------------~~~~L~~ypV~e~~G~IwV~l~~~~p 325 (397)
+|+|+.+|..+. ...+|++|+|.+++|+|||+++++++
T Consensus 98 ~G~~~~ip~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~ifv~l~~~~~ 148 (150)
T cd03545 98 KGNLKGVPFRRGLKGQGGMPKDFDMKQHGLEKLRVETVGGLVFASFSDEVE 148 (150)
T ss_pred CCCEEECccccccccccccccCcCHHHCCCcceeEeEECCEEEEEeCCCCC
Confidence 999999996421 23579999999999999999987654
No 17
>cd03539 Rieske_RO_Alpha_S5H This alignment model represents the N-terminal rieske iron-sulfur domain of the oxygenase alpha subunit (NagG) of salicylate 5-hydroxylase (S5H). S5H converts salicylate (2-hydroxybenzoate), a metabolic intermediate of phenanthrene, to gentisate (2,5-dihydroxybenzoate) as part of an alternate pathway for naphthalene catabolism. S5H is a multicomponent enzyme made up of NagGH (the oxygenase components), NagAa (the ferredoxin reductase component), and NagAb (the ferredoxin component). The oxygenase component is made up of alpha (NagG) and beta (NagH) subunits.
Probab=99.94 E-value=1.8e-27 Score=208.20 Aligned_cols=108 Identities=22% Similarity=0.406 Sum_probs=96.9
Q ss_pred eEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cceeEEccccCeEEcCCCccccCC
Q 015956 218 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 295 (397)
Q Consensus 218 W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v-~~~~L~CPyHGW~Fd~dG~~~~vP 295 (397)
|++||+++||+ +|++.++.+++.+|+|+|+.+|+++||.|+|||||++|+.|.. +++.|+||||||+||++|+|+.+|
T Consensus 1 W~~v~~~~~l~~~g~~~~~~~~~~~v~v~r~~dg~v~A~~n~C~Hrg~~L~~g~~~~~~~l~CPyHgw~fdl~G~l~~~p 80 (129)
T cd03539 1 WCYVGLEAEIPNPGDFKRTLIGERSVIMTRDPDGGINVVENVCAHRGMRFCRERNGNAKDFVCPYHQWNYSLKGDLQGVP 80 (129)
T ss_pred CEEEEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEeccCcCCCCEeeeeccCccCEEECCCCCCEECCCCCEeecc
Confidence 99999999998 5999999999999999999999999999999999999998764 446899999999999999999999
Q ss_pred Cccc-----------------ccCCccccceEEEcCEEEEeCCCCCC
Q 015956 296 STQL-----------------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (397)
Q Consensus 296 ~~~~-----------------~~~~L~~ypV~e~~G~IwV~l~~~~p 325 (397)
..+. ...+|++++|++++|+|||+++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~ 127 (129)
T cd03539 81 FRRGVKKDGKVNGGMPKDFKTKDHGLTKLKVATRGGVVFASFDHDVE 127 (129)
T ss_pred ccccccccccccccccCCcChHHCCCceeeEeEECCEEEEEeCCCCC
Confidence 7522 13579999999999999999987654
No 18
>cd03472 Rieske_RO_Alpha_BPDO_like Rieske non-heme iron oxygenase (RO) family, Biphenyl dioxygenase (BPDO)-like subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; composed of the oxygenase alpha subunits of BPDO and similar proteins including cumene dioxygenase (CumDO), nitrobenzene dioxygenase (NBDO), alkylbenzene dioxygenase (AkbDO) and dibenzofuran 4,4a-dioxygenase (DFDO). ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. BPDO degrades biphenyls and polychlorinated biphenyls (PCB's) while CumDO degrades cumene (isopropylbenzene), an aromatic hydrocarbon that is i
Probab=99.94 E-value=2.4e-27 Score=207.20 Aligned_cols=115 Identities=23% Similarity=0.404 Sum_probs=101.0
Q ss_pred chhcccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cceeEEccccCeEEcCC
Q 015956 211 NTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTD 288 (397)
Q Consensus 211 ~~~~~~~W~~Va~ssdL~~-G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v-~~~~L~CPyHGW~Fd~d 288 (397)
..+|.+.|+.|++++||++ |++..+++++++|+|+|+.+|+++|+.|+|||||++|+.|.. +++.|+||||||+||.+
T Consensus 2 ~~i~~~~W~~v~~~~el~~~g~~~~~~~~~~~i~l~r~~~g~i~A~~n~C~Hrg~~L~~g~~g~~~~i~CP~Hgw~fd~~ 81 (128)
T cd03472 2 ERVFARSWLLLGHETHIPKAGDYLTTYMGEDPVIVVRQKDGSIRVFLNQCRHRGMRICRSDAGNAKAFTCTYHGWAYDTA 81 (128)
T ss_pred cchhhCCCeEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEhhhCcCCCCeeeccCCCCcCEEECCcCCeEECCC
Confidence 4578999999999999985 777788899999999999999999999999999999998864 44689999999999999
Q ss_pred CccccCCCccc--------ccCCccccceEEEcCEEEEeCCCCCC
Q 015956 289 GKCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (397)
Q Consensus 289 G~~~~vP~~~~--------~~~~L~~ypV~e~~G~IwV~l~~~~p 325 (397)
|+|+.+|..+. ....|++++|.+++|+|||++++++|
T Consensus 82 G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~g~vfv~~~~~~~ 126 (128)
T cd03472 82 GNLVNVPFEKEAFCDGLDKADWGPLQARVETYKGLIFANWDAEAP 126 (128)
T ss_pred cCEEeccCcccccccCCCHHHCCCcceeEeEECCEEEEEcCCCCC
Confidence 99999998542 12468999999999999999988754
No 19
>cd03469 Rieske_RO_Alpha_N Rieske non-heme iron oxygenase (RO) family, N-terminal Rieske domain of the oxygenase alpha subunit; The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The oxygenase component may contain alpha and beta subunits, with the beta subunit having a purely structural function. Some oxygenase components contain only an alpha subunit. The oxygenase alpha subunit has two domains, an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from the reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. Reduced pyridine nucleotide is used as the i
Probab=99.94 E-value=4.8e-27 Score=199.50 Aligned_cols=108 Identities=33% Similarity=0.686 Sum_probs=99.4
Q ss_pred eEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cceeEEccccCeEEcCCCccccCC
Q 015956 218 WFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 295 (397)
Q Consensus 218 W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v-~~~~L~CPyHGW~Fd~dG~~~~vP 295 (397)
|++||.++||+ +|+.+.+.+.+++++|+|+.+|+++|+.|.|||+|++|+.|.+ .++.|+||||||+||.+|+|+.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~~~a~~n~CpH~g~~L~~g~~~~~~~i~Cp~Hg~~Fd~~G~~~~~P 80 (118)
T cd03469 1 WYFVGHSSELPEPGDYVTLELGGEPLVLVRDRDGEVRAFHNVCPHRGARLCEGRGGNAGRLVCPYHGWTYDLDGKLVGVP 80 (118)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCccEEEEECCCCCEEEEEEeCCCCCCEeeeccCCCCCEEECCCCCCEECCCCcEEeCC
Confidence 99999999999 9999999999999999998899999999999999999999988 789999999999999999999999
Q ss_pred Cccc------ccCCccccceEEEcCEEEEeCCCCCC
Q 015956 296 STQL------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (397)
Q Consensus 296 ~~~~------~~~~L~~ypV~e~~G~IwV~l~~~~p 325 (397)
..+. ...+|++|||++++|+|||+++++.+
T Consensus 81 ~~~~~~~~~~~~~~L~~~~v~~~~g~v~v~~~~~~~ 116 (118)
T cd03469 81 REEGFPGFDKEKLGLRTVPVEEWGGLIFVNLDPDAP 116 (118)
T ss_pred cccccCCCCHHHCCCeEEEEEEECCEEEEEcCCCCC
Confidence 8642 23579999999999999999987543
No 20
>cd03538 Rieske_RO_Alpha_AntDO Rieske non-heme iron oxygenase (RO) family, Anthranilate 1,2-dioxygenase (AntDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. AntDO converts anthranilate to catechol, a naturally occurring compound formed through tryptophan degradation and an important intermediate in the metabolism of many N-heterocyclic compounds such as indole, o-nitrobenzoate, carbazole, and quinaldine.
Probab=99.94 E-value=2.2e-26 Score=205.26 Aligned_cols=116 Identities=21% Similarity=0.420 Sum_probs=100.9
Q ss_pred cchhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCC-Cccc-ceeEEccccCeEEc
Q 015956 210 YNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHL-GSVN-EGRIQCPYHGWEYS 286 (397)
Q Consensus 210 ~~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~-G~v~-~~~L~CPyHGW~Fd 286 (397)
+..+|.+.|++|+++++|+ +|+++.++++|++|+|+|+.+|+++|+.|+|||||++|+. +.+. ++.|+||||||+||
T Consensus 15 ~~~i~~~~W~~v~~~~elp~~G~~~~~~i~g~~i~v~r~~~g~v~A~~n~CpHrg~~L~~~~~g~~~~~i~CP~Hgw~Fd 94 (146)
T cd03538 15 MERLFGNAWIYVGHESQVPNPGDYITTRIGDQPVVMVRHTDGSVHVLYNRCPHKGTKIVSDGCGNTGKFFRCPYHAWSFK 94 (146)
T ss_pred HHHHhhcCCEEEEEHHHCCCCCCEEEEEECCeeEEEEECCCCCEEEEeccCcCCCCEeecccccccCCEEECCCCCCEEC
Confidence 3457888999999999999 7999999999999999998899999999999999999964 4343 56899999999999
Q ss_pred CCCccccCCCccc----------ccCCcccc-ceEEEcCEEEEeCCCCCC
Q 015956 287 TDGKCEKMPSTQL----------RNVKIKSL-PCFEQEGMIWIWPGDEPP 325 (397)
Q Consensus 287 ~dG~~~~vP~~~~----------~~~~L~~y-pV~e~~G~IwV~l~~~~p 325 (397)
.+|+|+.+|..+. ...+|+++ .|++++|+|||++++++|
T Consensus 95 ~~G~~~~~p~~~~~~~~~~~~~~~~~~L~~~~~v~~~~g~ifv~~~~~~~ 144 (146)
T cd03538 95 TDGSLLAIPLKKGYEGTGFDPSHADKGMQRVGAVDIYRGFVFARLSPSGP 144 (146)
T ss_pred CCCCEEECCchhcCCcccCCcchhhCCCCcceeEEEECCEEEEEcCCCCC
Confidence 9999999997542 13579999 689999999999987654
No 21
>cd03535 Rieske_RO_Alpha_NDO Rieske non-heme iron oxygenase (RO) family, Nathphalene 1,2-dioxygenase (NDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. NDO is a three-component RO system consisting of a reductase, a ferredoxin, and a hetero-hexameric alpha-beta subunit oxygenase component. NDO catalyzes the oxidation of naphthalene to cis-(1R,2S)-dihydroxy-1,2-dihydronaphthalene (naphthalene cis-dihydrodiol) with the consumption of O2 and NAD(P)H. NDO has a relaxed substrate specificity and can oxidize almost 1
Probab=99.93 E-value=3.9e-26 Score=197.83 Aligned_cols=110 Identities=21% Similarity=0.486 Sum_probs=96.0
Q ss_pred cceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccc-eeEEccccCeEEcCCCcccc
Q 015956 216 NFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEK 293 (397)
Q Consensus 216 ~~W~~Va~ssdL~~-G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~-~~L~CPyHGW~Fd~dG~~~~ 293 (397)
+.|++||+++||++ |+...+.+++.+++|+|+.+|+++|+.|+|||||++|+.|...+ +.|+||||||+||.+|+|+.
T Consensus 1 ~~w~~v~~~~el~~~g~~~~~~~~~~~iiv~r~~~g~~~A~~n~CpHrg~~L~~g~~~~~~~i~Cp~Hgw~Fd~tG~~~~ 80 (123)
T cd03535 1 RAWVFLGHESEIPNAGDYVVRYIGDDSFIVCRDEDGEIRAMFNSCRHRGMQVCRAEMGNTSHFRCPYHGWTYRNTGRLVG 80 (123)
T ss_pred CCCEEEEEHHHCCCCCCEEEEEECCeEEEEEECCCCCEEEEcccCccCCCEeeccccCCCCEEECCcCCCEECCCcCEee
Confidence 46999999999986 77888889999999999889999999999999999999987664 68999999999999999999
Q ss_pred CCCccc--------ccCCccccce-EEEcCEEEEeCCCCCC
Q 015956 294 MPSTQL--------RNVKIKSLPC-FEQEGMIWIWPGDEPP 325 (397)
Q Consensus 294 vP~~~~--------~~~~L~~ypV-~e~~G~IwV~l~~~~p 325 (397)
+|..+. ...+|+++|+ ++++|+|||++++++|
T Consensus 81 ~p~~~~~~~~~~~~~~~~L~~~~~~e~~~g~vfv~l~~~~~ 121 (123)
T cd03535 81 VPAQQEAYGGGFDKSQWGLRPAPNLDSYNGLIFGSLDPKAP 121 (123)
T ss_pred CCCcccccccCcCHHHCCCccceeEEEECCEEEEEeCCCCC
Confidence 997542 1357999985 5589999999987644
No 22
>cd03536 Rieske_RO_Alpha_DTDO This alignment model represents the N-terminal rieske domain of the oxygenase alpha subunit (DitA) of diterpenoid dioxygenase (DTDO). DTDO is a novel aromatic-ring-hydroxylating dioxygenase found in Pseudomonas and other proteobacteria that degrades dehydroabietic acid (DhA). Specifically, DitA hydroxylates 7-oxodehydroabietic acid to 7-oxo-11,12-dihydroxy-8, 13-abietadien acid. The ditA1 and ditA2 genes encode the alpha and beta subunits of the oxygenase component of DTDO while the ditA3 gene encodes the ferredoxin component of DTDO. The organization of the genes encoding the various diterpenoid dioxygenase components, the phylogenetic distinctiveness of both the alpha subunit and the ferredoxin component, and the unusual iron-sulfur cluster of the ferredoxin all suggest that this enzyme belongs to a new class of aromatic ring-hydroxylating dioxygenases.
Probab=99.93 E-value=5.9e-26 Score=196.67 Aligned_cols=109 Identities=18% Similarity=0.363 Sum_probs=96.0
Q ss_pred eEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccc-eeEEccccCeEEcCCCccccCC
Q 015956 218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMP 295 (397)
Q Consensus 218 W~~Va~ssdL~~-G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~-~~L~CPyHGW~Fd~dG~~~~vP 295 (397)
|+.||+++||++ |++..+.+++.+++|+|+.+|+++||.|+|||+|++|+.|...+ ..|+||||||+||.+|+++.+|
T Consensus 1 w~~v~~~~el~~~g~~~~~~~~~~~i~v~r~~~g~v~A~~n~CpH~g~~L~~~~~~~~~~i~Cp~Hgw~fd~~G~~~~~p 80 (123)
T cd03536 1 WVLLGHESEIPNKGDFMVRDMGSDSVIVARDKDGEIHVSLNVCPHRGMRISTTDGGNTQIHVCIYHGWAFRPNGDFIGAP 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCceEEEEECCCCCEEEEeeeCCCCCCCcccccCCCcCEEECCcCCCEECCCCcEEECC
Confidence 999999999997 77888889999999999889999999999999999999876543 5799999999999999999999
Q ss_pred Cccc---------ccCCccccceEEEcCEEEEeCCCCCCC
Q 015956 296 STQL---------RNVKIKSLPCFEQEGMIWIWPGDEPPT 326 (397)
Q Consensus 296 ~~~~---------~~~~L~~ypV~e~~G~IwV~l~~~~p~ 326 (397)
..+. ...+|++|+|.+++|+|||++++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~L~~~~v~~~~g~Ifv~~~~~~~~ 120 (123)
T cd03536 81 VEKECMHGKMRTKAELGLHKARVTLYGGLIFATWNIDGPS 120 (123)
T ss_pred ccccccccCCCCHHHCCCcceeEEEECCEEEEEeCCCCCC
Confidence 7532 136799999999999999999876543
No 23
>cd03528 Rieske_RO_ferredoxin Rieske non-heme iron oxygenase (RO) family, Rieske ferredoxin component; composed of the Rieske ferredoxin component of some three-component RO systems including biphenyl dioxygenase (BPDO) and carbazole 1,9a-dioxygenase (CARDO). The RO family comprise a large class of aromatic ring-hydroxylating dioxygenases found predominantly in microorganisms. These enzymes enable microorganisms to tolerate and even exclusively utilize aromatic compounds for growth. ROs consist of two or three components: reductase, oxygenase, and ferredoxin (in some cases) components. The ferredoxin component contains either a plant-type or Rieske-type [2Fe-2S] cluster. The Rieske ferredoxin component in this family carries an electron from the RO reductase component to the terminal RO oxygenase component. BPDO degrades biphenyls and polychlorinated biphenyls. BPDO ferredoxin (BphF) has structural features consistent with a minimal and perhaps archetypical Rieske protein in that the in
Probab=99.92 E-value=2.7e-25 Score=183.23 Aligned_cols=96 Identities=27% Similarity=0.530 Sum_probs=90.7
Q ss_pred eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccCCC
Q 015956 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (397)
Q Consensus 218 W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~vP~ 296 (397)
|++++.++||++|+++.+++.|.+++|+|. +|+++||.|+|||+|++|..|.+.++.|+||||||+||. +|+|+..|.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~~~v~r~-~~~~~a~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~fd~~~G~~~~~p~ 79 (98)
T cd03528 1 WVRVCAVDELPEGEPKRVDVGGRPIAVYRV-DGEFYATDDLCTHGDASLSEGYVEGGVIECPLHGGRFDLRTGKALSLPA 79 (98)
T ss_pred CeEEEEhhhcCCCCEEEEEECCeEEEEEEE-CCEEEEECCcCCCCCCCCCCCeEeCCEEEeCCcCCEEECCCCcccCCCC
Confidence 999999999999999999999999999996 669999999999999999999888899999999999997 999999987
Q ss_pred cccccCCccccceEEEcCEEEE
Q 015956 297 TQLRNVKIKSLPCFEQEGMIWI 318 (397)
Q Consensus 297 ~~~~~~~L~~ypV~e~~G~IwV 318 (397)
. .+|++||+++++|.|||
T Consensus 80 ~----~~L~~~~v~~~~g~v~v 97 (98)
T cd03528 80 T----EPLKTYPVKVEDGDVYV 97 (98)
T ss_pred C----CCcceEeEEEECCEEEE
Confidence 4 37999999999999998
No 24
>cd03474 Rieske_T4moC Toluene-4-monooxygenase effector protein complex (T4mo), Rieske ferredoxin subunit; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. T4mo is a four-protein complex that catalyzes the NADH- and O2-dependent hydroxylation of toluene to form p-cresol. T4mo consists of an NADH oxidoreductase (T4moF), a diiron hydroxylase (T4moH), a catalytic effector protein (T4moD), and a Rieske ferredoxin (T4moC). T4moC contains a Rieske domain and functions as an obligate electron carrier between T4moF and T4moH. Rieske ferredoxins are found as subunits of membrane oxidase complexes, cis-dihydrodiol-forming aromatic dioxygenases, bacterial assimilatory nitrite reductases, and arsenite oxidase. Rieske ferredoxins are also found as soluble electron carriers in bacterial dioxygenase and monooxygenase complexes.
Probab=99.92 E-value=7.6e-25 Score=184.40 Aligned_cols=103 Identities=21% Similarity=0.374 Sum_probs=92.3
Q ss_pred eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccCCC
Q 015956 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (397)
Q Consensus 218 W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~vP~ 296 (397)
|++|+.++||++|+++.+++.+.+++++|..+|+++|+.|+|||+|++|+.|..+++.|+||||||+||+ +|.+.. |.
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~g~~~g~~i~CP~Hg~~Fdl~~G~~~~-~~ 79 (108)
T cd03474 1 FTKVCSLDDVWEGEMELVDVDGEEVLLVAPEGGEFRAFQGICPHQEIPLAEGGFDGGVLTCRAHLWQFDADTGEGLN-PR 79 (108)
T ss_pred CeEeeehhccCCCceEEEEECCeEEEEEEccCCeEEEEcCcCCCCCCCcccCcccCCEEEeCCcCCEEECCCccccC-CC
Confidence 8999999999999999999989889888888999999999999999999999988889999999999997 666654 33
Q ss_pred cccccCCccccceEEEcCEEEEeCCCCCC
Q 015956 297 TQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (397)
Q Consensus 297 ~~~~~~~L~~ypV~e~~G~IwV~l~~~~p 325 (397)
..+|++|||++++|.|||++..++|
T Consensus 80 ----~~~L~~~~v~v~~g~v~v~~~~~~~ 104 (108)
T cd03474 80 ----DCRLARYPVKVEGGDILVDTEGVLP 104 (108)
T ss_pred ----CCccceEeEEEECCEEEEeCCCcCc
Confidence 2479999999999999999976544
No 25
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=99.92 E-value=6e-25 Score=181.78 Aligned_cols=97 Identities=21% Similarity=0.459 Sum_probs=89.3
Q ss_pred eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccCCC
Q 015956 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (397)
Q Consensus 218 W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~vP~ 296 (397)
|++|+.++||++|+...+.+.|++++|+|..+|+++|+.|.|||+|++|+.|.+.++.|+||||||+||. +|.+.. |.
T Consensus 1 w~~v~~~~~l~~~~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~-p~ 79 (98)
T cd03530 1 WIDIGALEDIPPRGARKVQTGGGEIAVFRTADDEVFALENRCPHKGGPLSEGIVHGEYVTCPLHNWVIDLETGEAQG-PD 79 (98)
T ss_pred CEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCCEEEEcCcCCCCCCCccCCEEcCCEEECCCCCCEEECCCCCCCC-CC
Confidence 8999999999999999999999999999987899999999999999999999998999999999999996 888764 33
Q ss_pred cccccCCccccceEEEcCEEEEe
Q 015956 297 TQLRNVKIKSLPCFEQEGMIWIW 319 (397)
Q Consensus 297 ~~~~~~~L~~ypV~e~~G~IwV~ 319 (397)
. .+|++||+++++|.|||.
T Consensus 80 ~----~~l~~y~v~v~~g~v~v~ 98 (98)
T cd03530 80 E----GCVRTFPVKVEDGRVYLG 98 (98)
T ss_pred C----CccceEeEEEECCEEEEC
Confidence 2 379999999999999984
No 26
>cd03542 Rieske_RO_Alpha_HBDO Rieske non-heme iron oxygenase (RO) family, 2-Halobenzoate 1,2-dioxygenase (HBDO) subfamily, N-terminal Rieske domain of the oxygenase alpha subunit; ROs comprise a large class of aromatic ring-hydroxylating dioxygenases that enable microorganisms to tolerate and utilize aromatic compounds for growth. The oxygenase alpha subunit contains an N-terminal Rieske domain with an [2Fe-2S] cluster and a C-terminal catalytic domain with a mononuclear Fe(II) binding site. The Rieske [2Fe-2S] cluster accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron for catalysis. HBDO catalyzes the double hydroxylation of 2-halobenzoates with concomitant release of halogenide and carbon dioxide, yielding catechol.
Probab=99.92 E-value=1.1e-24 Score=189.27 Aligned_cols=109 Identities=24% Similarity=0.461 Sum_probs=94.1
Q ss_pred eEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cceeEEccccCeEEcCCCccccCC
Q 015956 218 WFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTDGKCEKMP 295 (397)
Q Consensus 218 W~~Va~ssdL~~-G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v-~~~~L~CPyHGW~Fd~dG~~~~vP 295 (397)
|+.||+.+||++ |+++.+++.+++++|+|+.+|+++|+.|.|||||++|+.|.. +++.|+||||||+||.||+|+.+|
T Consensus 1 w~~v~~~~elp~~g~~~~~~~~~~~i~l~r~~~g~v~A~~n~C~Hrg~~L~~g~~~~~~~i~CP~Hg~~Fd~~G~~~~~p 80 (123)
T cd03542 1 WVYLAHESQIPNNNDYFTTTIGRQPVVITRDKDGELNAFINACSHRGAMLCRRKQGNKGTFTCPFHGWTFSNTGKLLKVK 80 (123)
T ss_pred CEEeEEHHHCCCCCCEEEEEECCcEEEEEECCCCCEEEEcccCcCCCCccccccccCCCEEECcCCCCEecCCccEEECC
Confidence 899999999995 788999999999999998899999999999999999998754 456999999999999999999998
Q ss_pred Cccc--c--------cCCccccc-eEEEcCEEEEeCCCCCCC
Q 015956 296 STQL--R--------NVKIKSLP-CFEQEGMIWIWPGDEPPT 326 (397)
Q Consensus 296 ~~~~--~--------~~~L~~yp-V~e~~G~IwV~l~~~~p~ 326 (397)
.... . ..+|.+++ ++.++|+||+++++++|+
T Consensus 81 ~~~~~~y~~~~~~~~~~~L~~~~~~~~~~g~v~~~~~~~~~~ 122 (123)
T cd03542 81 DPKTAGYPEGFNCDGSHDLTKVARFESYRGFLFGSLNADVAP 122 (123)
T ss_pred cccccCcCcccChhhcCCCccceeEEEECCEEEEEcCCCCCC
Confidence 6321 1 24688886 566799999999877543
No 27
>TIGR02377 MocE_fam_FeS Rieske [2Fe-2S] domain protein, MocE subfamily. This model describes a subfamily of the Rieske-like [2Fe-2S] family of ferredoxins that includes MocE, part of the rhizopine (3-O-methyl-scyllo-inosamine) catabolic cluster in Rhizobium. Members of this family are related to, yet distinct from, the small subunit of nitrite reductase [NAD(P)H].
Probab=99.91 E-value=5.2e-24 Score=178.34 Aligned_cols=100 Identities=21% Similarity=0.385 Sum_probs=93.1
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccCC
Q 015956 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP 295 (397)
Q Consensus 217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~vP 295 (397)
.|+.++..+||++|....+.+.|.+++|+|..+|+++|++|.|||+|++|+.|.+.++.|+||+|||+||. ||+|+..|
T Consensus 1 ~w~~v~~~~dl~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~L~~G~~~~~~i~CP~Hg~~Fdl~tG~~~~~p 80 (101)
T TIGR02377 1 NWVKACDADDIGREDVARFDHGGRTFAIYRTPDDQYYATDGLCTHEYAHLADGLVMDTTVECPKHAGCFDYRTGEALNPP 80 (101)
T ss_pred CcEEEEEHHHcCCCCEEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCCCCCCCEEcCCEEECCccCCEEECCCCcccCCC
Confidence 49999999999999999999999999999977899999999999999999999999999999999999995 99999988
Q ss_pred CcccccCCccccceEEEcCEEEEeC
Q 015956 296 STQLRNVKIKSLPCFEQEGMIWIWP 320 (397)
Q Consensus 296 ~~~~~~~~L~~ypV~e~~G~IwV~l 320 (397)
.. .+|++||+++++|.|||.+
T Consensus 81 ~~----~~l~~y~v~v~~g~v~V~~ 101 (101)
T TIGR02377 81 VC----VNLKTYPVKVVDGAVYVDI 101 (101)
T ss_pred cc----CCcceEeEEEECCEEEEeC
Confidence 74 3799999999999999853
No 28
>cd03529 Rieske_NirD Assimilatory nitrite reductase (NirD) family, Rieske domain; Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium. Members include bacterial and fungal proteins. The bacterial NirD contains a single Rieske domain while fungal proteins have a C-terminal Rieske domain in addition to several other domains. The fungal NirD is involved in nutrient acquisition, functioning at the soil/fungus interface to control nutrient exchange between the fungus and the host plant. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The Rieske [2Fe-2S] cluster is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In this family, only a few members contain these residues. Other members may have lost the ability to bind the Rieske [2Fe-2S] cluster.
Probab=99.90 E-value=7.5e-24 Score=177.48 Aligned_cols=97 Identities=23% Similarity=0.297 Sum_probs=88.1
Q ss_pred eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCC-CCCCccc----ceeEEccccCeEEc-CCCcc
Q 015956 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACP-LHLGSVN----EGRIQCPYHGWEYS-TDGKC 291 (397)
Q Consensus 218 W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~-Ls~G~v~----~~~L~CPyHGW~Fd-~dG~~ 291 (397)
|++||.++||++|+.+.+.+.|++++|+|..+|+++|+.|.|||+|++ |+.|.+. ++.|+||||||+|| .+|+|
T Consensus 1 w~~v~~~~~l~~g~~~~~~~~g~~i~l~r~~~g~~~A~~~~CpH~g~~ll~~G~~~~~~~~~~i~Cp~Hg~~Fdl~tG~~ 80 (103)
T cd03529 1 WQTVCALDDLPPGSGVAALVGDTQIAIFRLPGREVYAVQNMDPHSRANVLSRGIVGDIGGEPVVASPLYKQHFSLKTGRC 80 (103)
T ss_pred CEEEeEHHHCCCCCcEEEEECCEEEEEEEeCCCeEEEEeCcCCCCCCcccCCceEcccCCCeEEECCCCCCEEEcCCCCc
Confidence 999999999999999999999999999998777999999999999997 7778653 34899999999999 59999
Q ss_pred ccCCCcccccCCccccceEEEcCEEEEe
Q 015956 292 EKMPSTQLRNVKIKSLPCFEQEGMIWIW 319 (397)
Q Consensus 292 ~~vP~~~~~~~~L~~ypV~e~~G~IwV~ 319 (397)
+..|.. +|++|||++++|.|||.
T Consensus 81 ~~~p~~-----~l~~y~v~~~~g~v~v~ 103 (103)
T cd03529 81 LEDEDV-----SVATFPVRVEDGEVYVK 103 (103)
T ss_pred cCCCCc-----cEeeEeEEEECCEEEEC
Confidence 998863 79999999999999983
No 29
>TIGR02378 nirD_assim_sml nitrite reductase [NAD(P)H], small subunit. This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused.
Probab=99.90 E-value=7.8e-24 Score=177.59 Aligned_cols=99 Identities=23% Similarity=0.412 Sum_probs=90.2
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCC-CCCCCCCccccee----EEccccCeEEcC-CCc
Q 015956 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHR-ACPLHLGSVNEGR----IQCPYHGWEYST-DGK 290 (397)
Q Consensus 217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHR-Ga~Ls~G~v~~~~----L~CPyHGW~Fd~-dG~ 290 (397)
.|++|+.++||++|..+.+.+.|.+++|+|..+|+++|+.|.|||+ +.+|+.|.+.++. |+||||||+||. +|+
T Consensus 1 ~w~~v~~~~el~~g~~~~~~v~g~~l~v~r~~~~~~~a~~~~CpH~g~~~L~~g~~~~~~~~~~i~Cp~Hg~~Fdl~tG~ 80 (105)
T TIGR02378 1 TWQDICAIDDIPEETGVCVLLGDTQIAIFRVPGDQVFAIQNMCPHKRAFVLSRGIVGDAQGELWVACPLHKRNFRLEDGR 80 (105)
T ss_pred CcEEEEEHHHCCCCCcEEEEECCEEEEEEEeCCCcEEEEeCcCCCCCCccccceEEccCCCcEEEECCcCCCEEEcCCcc
Confidence 4999999999999999999999999999997788999999999999 8999998776555 999999999996 999
Q ss_pred cccCCCcccccCCccccceEEEcCEEEEeC
Q 015956 291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWP 320 (397)
Q Consensus 291 ~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l 320 (397)
|+..|. .+|++||+++++|.|||.+
T Consensus 81 ~~~~~~-----~~L~~y~v~v~~g~v~v~~ 105 (105)
T TIGR02378 81 CLEDDS-----GSVRTYEVRVEDGRVYVAL 105 (105)
T ss_pred ccCCCC-----ccEeeEeEEEECCEEEEeC
Confidence 998775 3799999999999999964
No 30
>PRK09965 3-phenylpropionate dioxygenase ferredoxin subunit; Provisional
Probab=99.89 E-value=2.2e-23 Score=175.82 Aligned_cols=101 Identities=20% Similarity=0.355 Sum_probs=91.5
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccc-eeEEccccCeEEcC-CCccccC
Q 015956 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-GRIQCPYHGWEYST-DGKCEKM 294 (397)
Q Consensus 217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~-~~L~CPyHGW~Fd~-dG~~~~v 294 (397)
.|+.||..+||++|..+.+.+. .+++|+| .+|+++|++|.|||+|++|+.|.+++ +.|+||||||+||. +|+|+..
T Consensus 2 ~~~~v~~~~~l~~g~~~~~~~~-~~i~v~~-~~g~~~A~~~~CpH~g~~L~~G~~~~~~~i~Cp~Hg~~Fd~~tG~~~~~ 79 (106)
T PRK09965 2 NRIYACPVADLPEGEALRVDTS-PVIALFN-VGGEFYAIDDRCSHGNASLSEGYLEDDATVECPLHAASFCLRTGKALCL 79 (106)
T ss_pred CcEEeeeHHHcCCCCeEEEeCC-CeEEEEE-ECCEEEEEeCcCCCCCCCCCceEECCCCEEEcCCCCCEEEcCCCCeeCC
Confidence 4999999999999999888877 8899999 58999999999999999999998887 79999999999996 9999988
Q ss_pred CCcccccCCccccceEEEcCEEEEeCCCC
Q 015956 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (397)
Q Consensus 295 P~~~~~~~~L~~ypV~e~~G~IwV~l~~~ 323 (397)
|.. .+|++|++++++|.|||.+..+
T Consensus 80 p~~----~~l~~y~v~v~~g~v~v~~~~~ 104 (106)
T PRK09965 80 PAT----DPLRTYPVHVEGGDIFIDLPEA 104 (106)
T ss_pred CCC----CCcceEeEEEECCEEEEEccCC
Confidence 763 4799999999999999988654
No 31
>cd03478 Rieske_AIFL_N AIFL (apoptosis-inducing factor like) family, N-terminal Rieske domain; members of this family show similarity to human AIFL, containing an N-terminal Rieske domain and a C-terminal pyridine nucleotide-disulfide oxidoreductase domain (Pyr_redox). The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. AIFL shares 35% homology with human AIF (apoptosis-inducing factor), mainly in the Pyr_redox domain. AIFL is predominantly localized to the mitochondria. AIFL induces apoptosis in a caspase-dependent manner.
Probab=99.89 E-value=2.1e-23 Score=171.89 Aligned_cols=93 Identities=26% Similarity=0.489 Sum_probs=87.1
Q ss_pred EeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccCCCcc
Q 015956 220 PVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQ 298 (397)
Q Consensus 220 ~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~vP~~~ 298 (397)
.|+.++||++|++..+.+.|.+++|+|. +|+++|++|+|||+|++|..|.+.++.|+||||||+||. +|+|+..|..
T Consensus 2 ~v~~~~~l~~g~~~~~~~~~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~~p~~- 79 (95)
T cd03478 2 VVCRLSDLGDGEMKEVDVGDGKVLLVRQ-GGEVHAIGAKCPHYGAPLAKGVLTDGRIRCPWHGACFNLRTGDIEDAPAL- 79 (95)
T ss_pred ceeehhhCCCCCEEEEEeCCcEEEEEEE-CCEEEEEcCcCcCCCCccCCCeEeCCEEEcCCCCCEEECCCCcCcCCCcc-
Confidence 4789999999999999999999999996 899999999999999999999988999999999999996 9999999874
Q ss_pred cccCCccccceEEEcCEEE
Q 015956 299 LRNVKIKSLPCFEQEGMIW 317 (397)
Q Consensus 299 ~~~~~L~~ypV~e~~G~Iw 317 (397)
..|++||+++++|.||
T Consensus 80 ---~~l~~~~v~~~~g~i~ 95 (95)
T cd03478 80 ---DSLPCYEVEVEDGRVY 95 (95)
T ss_pred ---CCcceEEEEEECCEEC
Confidence 3699999999999997
No 32
>PF13806 Rieske_2: Rieske-like [2Fe-2S] domain; PDB: 2JO6_A 3C0D_A 3D89_A 2JZA_A.
Probab=99.86 E-value=8.6e-22 Score=166.72 Aligned_cols=98 Identities=27% Similarity=0.601 Sum_probs=91.5
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCC-CCCCCCCCcccce----eEEccccCeEEcC-CCc
Q 015956 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAH-RACPLHLGSVNEG----RIQCPYHGWEYST-DGK 290 (397)
Q Consensus 217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPH-RGa~Ls~G~v~~~----~L~CPyHGW~Fd~-dG~ 290 (397)
.|+.||..+||++|..+.+.+.|++|+|||..+|+++|++|.||| ++.+|+.|.+.+. .+.||+|+|.||+ +|+
T Consensus 1 ~W~~v~~~~~L~~~~~~~~~v~g~~Ialf~~~~~~vyAi~n~Cph~~~~~Ls~G~i~~~~g~~~V~CPlH~~~f~L~tG~ 80 (104)
T PF13806_consen 1 SWVPVCPLDDLPPGEGRAVEVDGRQIALFRVRDGEVYAIDNRCPHSQAGPLSDGLIGDGNGEPCVACPLHKWRFDLRTGE 80 (104)
T ss_dssp SEEEEEETTTSCTTSEEEEEETTEEEEEEEESTTEEEEEESBETTTTSSCGCGSEEEECTTEEEEEETTTTEEEETTTTE
T ss_pred CeeEeccHHHCCCCCcEEEEECCeEEEEEEeCCCCEEEEeccCCccCCcccceeEEccCCCCEEEECCCCCCeEECCCcC
Confidence 599999999999999999999999999999779999999999999 8999999998765 9999999999996 999
Q ss_pred cccCCCcccccCCccccceEEEcCEEEEe
Q 015956 291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIW 319 (397)
Q Consensus 291 ~~~vP~~~~~~~~L~~ypV~e~~G~IwV~ 319 (397)
|+..|.. ++++|||++++|.|||.
T Consensus 81 ~~~~~~~-----~l~~ypvrv~~g~V~V~ 104 (104)
T PF13806_consen 81 CLEDPDV-----SLRTYPVRVEDGQVYVE 104 (104)
T ss_dssp ESSECSE-----BSBEEEEEECTTEEEEE
T ss_pred cCCCCCC-----cEEeEEEEEECCEEEEC
Confidence 9987663 79999999999999984
No 33
>PF00355 Rieske: Rieske [2Fe-2S] domain; InterPro: IPR017941 There are multiple types of iron-sulphur clusters which are grouped into three main categories based on their atomic content: [2Fe-2S], [3Fe-4S], [4Fe-4S] (see PDOC00176 from PROSITEDOC), and other hybrid or mixed metal types. Two general types of [2Fe-2S] clusters are known and they differ in their coordinating residues. The ferredoxin-type [2Fe-2S] clusters are coordinated to the protein by four cysteine residues (see PDOC00175 from PROSITEDOC). The Rieske-type [2Fe-2S] cluster is coordinated to its protein by two cysteine residues and two histidine residues [, ]. The structure of several Rieske domains has been solved []. It contains three layers of antiparallel beta sheets forming two beta sandwiches. Both beta sandwiches share the central sheet 2. The metal-binding site is at the top of the beta sandwich formed by the sheets 2 and 3. The Fe1 iron of the Rieske cluster is coordinated by two cysteines while the other iron Fe2 is coordinated by two histidines. Two inorganic sulphide ions bridge the two iron ions forming a flat, rhombic cluster. Rieske-type iron-sulphur clusters are common to electron transfer chains of mitochondria and chloroplast and to non-haem iron oxygenase systems: The Rieske protein of the Ubiquinol-cytochrome c reductase (1.10.2.2 from EC) (also known as the bc1 complex or complex III), a complex of the electron transport chains of mitochondria and of some aerobic prokaryotes; it catalyses the oxidoreduction of ubiquinol and cytochrome c. The Rieske protein of chloroplastic plastoquinone-plastocyanin reductase (1.10.99.1 from EC) (also known as the b6f complex). It is functionally similar to the bc1 complex and catalyses the oxidoreduction of plastoquinol and cytochrome f. Bacterial naphthalene 1,2-dioxygenase subunit alpha, a component of the naphthalene dioxygenase (NDO) multicomponent enzyme system which catalyses the incorporation of both atoms of molecular oxygen into naphthalene to form cis-naphthalene dihydrodiol. Bacterial 3-phenylpropionate dioxygenase ferredoxin subunit. Bacterial toluene monoxygenase. Bacterial biphenyl dioxygenase. ; GO: 0016491 oxidoreductase activity, 0051537 2 iron, 2 sulfur cluster binding, 0055114 oxidation-reduction process; PDB: 2XRX_A 2XR8_O 2XSH_G 2XSO_I 2YFI_C 2YFL_A 2YFJ_K 1G8J_D 1G8K_D 1NYK_B ....
Probab=99.86 E-value=6.3e-22 Score=162.62 Aligned_cols=93 Identities=31% Similarity=0.646 Sum_probs=79.7
Q ss_pred ceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc--ccceeEEccccCeEEcCC-Cccc
Q 015956 217 FWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYSTD-GKCE 292 (397)
Q Consensus 217 ~W~~Va~ssdL~~-G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~--v~~~~L~CPyHGW~Fd~d-G~~~ 292 (397)
.|++|+.++||++ |+...+.+.+.. ++++..+|+++|+.|.|||+|++|..|. .+++.|+||||||+||.+ |+|+
T Consensus 1 ~W~~v~~~~el~~~~~~~~~~~~~~~-v~~~~~~g~~~A~~~~CpH~g~~l~~~~~~~~~~~i~Cp~Hg~~Fd~~tG~~~ 79 (97)
T PF00355_consen 1 QWVPVCRSSELPEPGDVKRVDVGGKL-VLVRRSDGEIYAFSNRCPHQGCPLSEGPFSEDGGVIVCPCHGWRFDLDTGECV 79 (97)
T ss_dssp SEEEEEEGGGSHSTTEEEEEEETTEE-EEEEETTTEEEEEESB-TTTSBBGGCSSEETTTTEEEETTTTEEEETTTSBEE
T ss_pred CEEEeeEHHHCCCCCCEEEEEcCCcE-EEEEeCCCCEEEEEccCCccceeEcceecccccCEEEeCCcCCEEeCCCceEe
Confidence 5999999999998 888899995545 5555689999999999999999999994 456799999999999975 9999
Q ss_pred cCCCcccccCCccccceEEEcC
Q 015956 293 KMPSTQLRNVKIKSLPCFEQEG 314 (397)
Q Consensus 293 ~vP~~~~~~~~L~~ypV~e~~G 314 (397)
..|... +++.|||+++++
T Consensus 80 ~~p~~~----~l~~~~v~ve~~ 97 (97)
T PF00355_consen 80 GGPAPR----PLPLYPVKVEGD 97 (97)
T ss_dssp ESTTCS----BSTEEEEEEETT
T ss_pred cCCCCC----CcCCCCeEEeCC
Confidence 999953 699999999864
No 34
>PRK09511 nirD nitrite reductase small subunit; Provisional
Probab=99.86 E-value=1.6e-21 Score=165.83 Aligned_cols=98 Identities=19% Similarity=0.221 Sum_probs=88.0
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEc-CCCcEEEEeecCCCCCCC-CCCCcccc---e-eEEccccCeEEcC-CC
Q 015956 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRG-KDGIPGCVQNTCAHRACP-LHLGSVNE---G-RIQCPYHGWEYST-DG 289 (397)
Q Consensus 217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~-~dG~i~A~~N~CPHRGa~-Ls~G~v~~---~-~L~CPyHGW~Fd~-dG 289 (397)
.|+.||..+||++|+...+.+.|++|+|+|. .+|+++|++|.|||.|++ |+.|.+.+ + .++||+|||+||+ +|
T Consensus 3 ~~~~v~~~~dl~~g~~~~v~v~g~~i~l~~~~~~g~~~A~~n~CpH~~~~~L~~G~~~~~~g~~~V~CP~H~~~Fdl~TG 82 (108)
T PRK09511 3 QWKDICKIDDILPGTGVCALVGDEQVAIFRPYHDEQVFAISNIDPFFQASVLSRGLIAEHQGELWVASPLKKQRFRLSDG 82 (108)
T ss_pred cceEeeEHhHcCCCceEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCceEccCCCeEEEECCCCCCEEECCCc
Confidence 4999999999999999999999999999994 589999999999999985 99998742 2 5999999999995 99
Q ss_pred ccccCCCcccccCCccccceEEEcCEEEEe
Q 015956 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIW 319 (397)
Q Consensus 290 ~~~~vP~~~~~~~~L~~ypV~e~~G~IwV~ 319 (397)
+|+..|.. +|++|||++++|.|||.
T Consensus 83 ~~~~~~~~-----~l~typV~ve~g~V~v~ 107 (108)
T PRK09511 83 LCMEDEQF-----SVKHYDARVKDGVVQLR 107 (108)
T ss_pred ccCCCCCc-----cEeeEeEEEECCEEEEe
Confidence 99987653 79999999999999984
No 35
>cd03467 Rieske Rieske domain; a [2Fe-2S] cluster binding domain commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. The Rieske domain can be divided into two subdomains, with an incomplete six-stranded, antiparallel beta-barrel at one end, and an iron-sulfur cluster binding subdomain at the other. The Rieske iron-sulfur center contains a [2Fe-2S] cluster, which is involved in electron transfer, and is liganded to two histidine and two cysteine residues present in conserved sequences called Rieske motifs. In RO systems, the N-terminal Rieske domain of the alpha subunit acts as an electron shuttle that accepts electrons from a reductase or ferredoxin component and transfers them to the mononuclear iron in the alpha subunit C-terminal domain to be used for catalysis.
Probab=99.85 E-value=4.2e-21 Score=158.37 Aligned_cols=95 Identities=25% Similarity=0.484 Sum_probs=87.8
Q ss_pred eEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccCCC
Q 015956 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (397)
Q Consensus 218 W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~vP~ 296 (397)
|++++..++|++|+...+.+.+.+++|+|..+|+++|++|.|||+|++|..+...++.|+||+|||.||. ||+|+..|.
T Consensus 1 w~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~a~~~~CpH~g~~l~~~~~~~~~i~Cp~H~~~f~~~~G~~~~~p~ 80 (98)
T cd03467 1 WVVVGALSELPPGGGRVVVVGGGPVVVVRREGGEVYALSNRCTHQGCPLSEGEGEDGCIVCPCHGSRFDLRTGEVVSGPA 80 (98)
T ss_pred CEEeeeccccCCCceEEEEECCeEEEEEEeCCCEEEEEcCcCCCCCccCCcCccCCCEEEeCCCCCEEeCCCccCcCCCC
Confidence 8999999999999999999999999999988889999999999999999999888899999999999998 999999987
Q ss_pred cccccCCccccceEEE-cCEE
Q 015956 297 TQLRNVKIKSLPCFEQ-EGMI 316 (397)
Q Consensus 297 ~~~~~~~L~~ypV~e~-~G~I 316 (397)
. ..|++||+++. ++.|
T Consensus 81 ~----~~l~~~~v~~~~~~~~ 97 (98)
T cd03467 81 P----RPLPKYPVKVEGDGVV 97 (98)
T ss_pred C----CCcCEEEEEEeCCceE
Confidence 3 47999999999 4444
No 36
>COG2146 {NirD} Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases [Inorganic ion transport and metabolism / General function prediction only]
Probab=99.84 E-value=1.1e-20 Score=160.48 Aligned_cols=101 Identities=23% Similarity=0.432 Sum_probs=89.9
Q ss_pred cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccce-eEEccccCeEEcC-CCcccc
Q 015956 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEG-RIQCPYHGWEYST-DGKCEK 293 (397)
Q Consensus 216 ~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~-~L~CPyHGW~Fd~-dG~~~~ 293 (397)
..|+.+|..+||+++..+.+.+.+..+++++..+|+++|+.|+|||.|++|+.|.+.+. .++||+|+|.||. +|+|+.
T Consensus 3 ~~w~~~c~~~dl~~~~~~~v~~~~~~~~~~~~~~g~v~A~~n~CpH~~~~l~~g~v~~~~~i~Cp~H~a~Fdl~tG~~~~ 82 (106)
T COG2146 3 MNWIRICKVDDLPEGGGVRVLVGGGRFALVVRADGEVFAIDNRCPHAGAPLSRGLVEGDETVVCPLHGARFDLRTGECLE 82 (106)
T ss_pred CceEEEEehHhcCCCCceEEEecCCEEEEEEecCCEEEEEeCcCCCCCCcccccEeCCCCEEECCccCCEEEcCCCceec
Confidence 46999999999999999999984425666666899999999999999999999999886 5999999999995 999999
Q ss_pred CCCcccccCCccccceEEEcCEEEEeC
Q 015956 294 MPSTQLRNVKIKSLPCFEQEGMIWIWP 320 (397)
Q Consensus 294 vP~~~~~~~~L~~ypV~e~~G~IwV~l 320 (397)
.|... .|++||+++++|.|||.+
T Consensus 83 ~p~~~----~l~~y~vrve~g~v~v~~ 105 (106)
T COG2146 83 PPAGK----TLKTYPVRVEGGRVFVDL 105 (106)
T ss_pred CCCCC----ceeEEeEEEECCEEEEec
Confidence 99853 199999999999999975
No 37
>cd03477 Rieske_YhfW_C YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.
Probab=99.82 E-value=3.1e-20 Score=153.54 Aligned_cols=88 Identities=24% Similarity=0.393 Sum_probs=79.5
Q ss_pred eeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCCCcccc
Q 015956 221 VAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300 (397)
Q Consensus 221 Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~ 300 (397)
++.++||++|+...+.+.|++++|+|+.+|+++|+.|.|||+|++|+.|.. ++.|+||||||+||.+|+++..|..
T Consensus 2 ~~~~~dl~~g~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~l~~g~~-~~~i~CP~Hg~~Fd~~G~~~~~Pa~--- 77 (91)
T cd03477 2 ITDIEDLAPGEGGVVNIGGKRLAVYRDEDGVLHTVSATCTHLGCIVHWNDA-EKSWDCPCHGSRFSYDGEVIEGPAV--- 77 (91)
T ss_pred ccchhhcCCCCeEEEEECCEEEEEEECCCCCEEEEcCcCCCCCCCCcccCC-CCEEECCCCCCEECCCCcEeeCCCC---
Confidence 578899999999999999999999998899999999999999999998865 5699999999999999999999974
Q ss_pred cCCccccceEEEc
Q 015956 301 NVKIKSLPCFEQE 313 (397)
Q Consensus 301 ~~~L~~ypV~e~~ 313 (397)
..|++|++.-.+
T Consensus 78 -~~l~~y~v~~~~ 89 (91)
T cd03477 78 -SGLKPADDAPID 89 (91)
T ss_pred -CCCCeeEeeccc
Confidence 378999987543
No 38
>cd03476 Rieske_ArOX_small Small subunit of Arsenite oxidase (ArOX) family, Rieske domain; ArOX is a molybdenum/iron protein involved in the detoxification of arsenic, oxidizing it to arsenate. It consists of two subunits, a large subunit similar to members of the DMSO reductase family of molybdenum enzymes and a small subunit with a Rieske-type [2Fe-2S] cluster. The large subunit of ArOX contains the molybdenum site at which the oxidation of arsenite occurs. The small subunit contains a domain homologous to the Rieske domains of the cytochrome bc(1) and cytochrome b6f complexes as well as naphthalene 1,2-dioxygenase. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer.
Probab=99.78 E-value=8.1e-19 Score=153.48 Aligned_cols=95 Identities=21% Similarity=0.326 Sum_probs=85.5
Q ss_pred EeeecCCCCCCCceeEeeCC--eeEEEEEcC---------CCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-
Q 015956 220 PVAFSTDLKDDTMVPFDCFE--EPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST- 287 (397)
Q Consensus 220 ~Va~ssdL~~G~~~~v~i~G--~~IVV~R~~---------dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~- 287 (397)
.||..++|++|+.+.+.+.+ .+++|+|.. +|+++|++|+|||.||+|+.+. +++.|+||+|||+||.
T Consensus 5 ~v~~~~~l~~g~~~~~~~~~~~~~i~v~r~~~~~~~~~~~~g~~~A~~~~CpH~g~~L~~g~-~~~~v~CP~Hg~~Fdl~ 83 (126)
T cd03476 5 KVANLSQLSPGQPVTFNYPDESSPCVLVKLGVPVPGGVGPDNDIVAFSALCTHMGCPLTYDP-SNKTFVCPCHFSQFDPA 83 (126)
T ss_pred EEeeHHHCCCCCeEEEEcCCCCCcEEEEECCccccCccccCCEEEEEeCcCCCCCccccccc-cCCEEEccCcCCEEeCC
Confidence 78999999999999999877 889999964 7999999999999999999987 6789999999999996
Q ss_pred -CCccccCCCcccccCCccccceEEE--cCEEEEe
Q 015956 288 -DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 319 (397)
Q Consensus 288 -dG~~~~vP~~~~~~~~L~~ypV~e~--~G~IwV~ 319 (397)
+|+++..|.. ..|+.||++++ +|.|||-
T Consensus 84 tgG~~~~gPa~----~~L~~ypv~ve~~~g~V~~~ 114 (126)
T cd03476 84 RGGQMVSGQAT----QNLPQIVLEYDEASGDIYAV 114 (126)
T ss_pred CCCeEEcCCCC----CCCCeEEEEEECCCCEEEEE
Confidence 5799988863 48999999999 9999985
No 39
>cd03471 Rieske_cytochrome_b6f Iron-sulfur protein (ISP) component of the b6f complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The cytochrome b6f complex from Mastigocladus laminosus, a thermophilic cyanobacterium, contains four large subunits, including cytochrome f, cytochrome b6, the Rieske ISP, and subunit IV; as well as four small hydrophobic subunits, PetG, PetL, PetM, and PetN. Rieske ISP, one of the large subunits of the cytochrome bc-type complexes, is involved in respiratory and photosynthetic electron transfer. The core of the chloroplast b6f complex is similar to the analogous respiratory cytochrome bc(1) complex, but the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.73 E-value=1.5e-17 Score=145.56 Aligned_cols=90 Identities=18% Similarity=0.377 Sum_probs=73.4
Q ss_pred CCCCceeEe-e-CCeeEEEEEcCCCcE--EEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCCCcccccCC
Q 015956 228 KDDTMVPFD-C-FEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVK 303 (397)
Q Consensus 228 ~~G~~~~v~-i-~G~~IVV~R~~dG~i--~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~ 303 (397)
.+|++..+. . .+..|+|++ .+|++ +|++|.|||+||+|..+.. ++.|+||+|||+||.+|+++..|.. .+
T Consensus 21 ~~~~~~~~~~~~~~~~Ilv~~-~dg~i~~~A~~~~CpH~G~~l~~~~~-~~~i~CP~Hg~~Fd~tG~~~~gPa~----~~ 94 (126)
T cd03471 21 NPGDRSLVQGLKGDPTYLIVE-EDKTIANYGINAVCTHLGCVVPWNAA-ENKFKCPCHGSQYDATGKVVRGPAP----LS 94 (126)
T ss_pred CCCCeEEEEEecCCeEEEEEe-CCCeEEEEEecCCCcCCCCCcCccCC-CCEEEcCCCCCEECCCCCEecCCCC----CC
Confidence 367766666 3 445555555 78977 8999999999999998754 5799999999999999999988863 48
Q ss_pred ccccceEEEcCEEEEeCCCC
Q 015956 304 IKSLPCFEQEGMIWIWPGDE 323 (397)
Q Consensus 304 L~~ypV~e~~G~IwV~l~~~ 323 (397)
|+.|+|++++|.|||.+..+
T Consensus 95 L~~y~V~vedg~I~V~~~~~ 114 (126)
T cd03471 95 LALVHATVDDDKVVLSPWTE 114 (126)
T ss_pred CceEeEEEECCEEEEEECcc
Confidence 99999999999999986543
No 40
>TIGR02694 arsenite_ox_S arsenite oxidase, small subunit. This model represents the small subunit of an arsenite oxidase complex. It is a Rieske protein and appears to rely on the Tat (twin-arginine translocation) system to cross the membrane. Although this enzyme could run in the direction of arsenate reduction to arsenite in principle, the relevant biological function is arsenite oxidation for energy metabolism, not arsenic resistance. Homologs to both large (TIGR02693) and small subunits that score in the gray zone between the set trusted and noise bit score cutoffs for the respective models are found in Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
Probab=99.70 E-value=5.2e-17 Score=142.76 Aligned_cols=94 Identities=21% Similarity=0.355 Sum_probs=81.9
Q ss_pred EeeecCCCCCCCceeEeeCC--eeEEEEEc---------CCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCC
Q 015956 220 PVAFSTDLKDDTMVPFDCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 288 (397)
Q Consensus 220 ~Va~ssdL~~G~~~~v~i~G--~~IVV~R~---------~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~d 288 (397)
.||..+||++|+++.+.+.+ .+++++|. .+|+++|++|.|||.|++|..+. ++..|.||+|||+||.+
T Consensus 8 ~v~~~~dl~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~G~~~A~~~~CpH~g~~L~~~~-~~~~i~CP~Hga~Fdl~ 86 (129)
T TIGR02694 8 RVANISELKLNEPLDFNYPDASSPGVLLKLGTPVEGGVGPDGDIVAFSTLCTHMGCPVSYSA-DNKTFNCPCHFSVFDPE 86 (129)
T ss_pred EEEeHHHCCCCCCEEEecCCCCCCEEEEecCCcccCccccCCEEEEEeCcCCCCCccccccc-CCCEEEcCCCCCEECCC
Confidence 78999999999999999865 47888883 58999999999999999999875 67899999999999974
Q ss_pred --CccccCCCcccccCCccccceEEE-cCEEEE
Q 015956 289 --GKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 318 (397)
Q Consensus 289 --G~~~~vP~~~~~~~~L~~ypV~e~-~G~IwV 318 (397)
|+++..|.. .+|++||+++. +|.||.
T Consensus 87 tgG~~~~gP~~----~~L~~y~v~v~~~G~V~~ 115 (129)
T TIGR02694 87 KGGQQVWGQAT----QNLPQIVLRVADNGDIFA 115 (129)
T ss_pred CCCcEECCCCC----CCCCeeEEEEECCCeEEE
Confidence 699987763 47999999997 599984
No 41
>cd03470 Rieske_cytochrome_bc1 Iron-sulfur protein (ISP) component of the bc(1) complex family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. The bc(1) complex is a multisubunit enzyme found in many different organisms including uni- and multi-cellular eukaryotes, plants (in their mitochondria) and bacteria. The cytochrome bc(1) and b6f complexes are central components of the respiratory and photosynthetic electron transport chains, respectively, which carry out similar core electron and proton transfer steps. The bc(1) and b6f complexes share a common core structure of three catalytic subunits: cyt b, the Rieske ISP, and either a cyt c1 in the bc(1) complex or cyt f in the b6f complex, which are arranged in an integral membrane-bound dimeric complex. While the core of the b6f complex is similar to that of the bc(1) complex, the domain arrangement outside the core and the complement of prosthetic groups are strikingly different.
Probab=99.67 E-value=2.2e-16 Score=138.14 Aligned_cols=92 Identities=21% Similarity=0.324 Sum_probs=81.6
Q ss_pred ecCCCCCCCceeEeeCCeeEEEEEcC----------------------------CCcEEEEeecCCCCCCCCCCCcccce
Q 015956 223 FSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------DGIPGCVQNTCAHRACPLHLGSVNEG 274 (397)
Q Consensus 223 ~ssdL~~G~~~~v~i~G~~IVV~R~~----------------------------dG~i~A~~N~CPHRGa~Ls~G~v~~~ 274 (397)
..++|++|+.+.+.+.|.+|+|+|.. +|+++|+.+.|||.||.+..+.+.++
T Consensus 5 dl~~l~~G~~~~v~w~Gkpv~I~~rt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~CtH~gc~~~~~~~~~~ 84 (126)
T cd03470 5 DLSKIEEGQLITVEWRGKPVFIRRRTPEEIAEAKAVDLSLLDDPDPAANRVRSGKPEWLVVIGICTHLGCVPTYRAGDYG 84 (126)
T ss_pred EhhhCCCCCEEEEEECCeEEEEEECCHHHHhhhhhcchhhcCCccccccccccCCCcEEEEeCcCCCCCCeeccccCCCC
Confidence 56889999999999999999999942 67999999999999999987766778
Q ss_pred eEEccccCeEEcCCCccccCCCcccccCCccccceEEEc-CEEEE
Q 015956 275 RIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE-GMIWI 318 (397)
Q Consensus 275 ~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e~~-G~IwV 318 (397)
.|.||||||+||.+|+.+..|.. .+|+.||+++.+ +.|+|
T Consensus 85 ~~~CPcHgs~Fdl~G~~~~gPa~----~~L~~~p~~~~~~~~l~i 125 (126)
T cd03470 85 GFFCPCHGSHYDASGRIRKGPAP----LNLEVPPYKFLSDTTIVI 125 (126)
T ss_pred EEEecCcCCEECCCCeEecCCCC----CCCCeeeEEEecCCEEEe
Confidence 99999999999999999988874 589999999876 67765
No 42
>cd03473 Rieske_CMP_Neu5Ac_hydrolase_N Cytidine monophosphate-N-acetylneuraminic acid (CMP Neu5Ac) hydroxylase family, N-terminal Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. CMP Neu5Ac hydroxylase is the key enzyme for the synthesis of N-glycolylneuraminic acid (NeuGc) from N-acetylneuraminic acid (Neu5Ac), NeuGc and Neu5Ac are members of a family of cell surface sugars called sialic acids. All mammals except humans have both NeuGc variants on their cell surfaces. In humans, the gene encoding CMP Neu5Ac hydroxylase has a mutation within its coding region that abolishes NeuGc production.
Probab=99.66 E-value=1.7e-16 Score=135.10 Aligned_cols=72 Identities=15% Similarity=0.330 Sum_probs=66.2
Q ss_pred cCCCCCCCceeEee-CCeeEEEEEcCCCcEEEEeecCCCCCCCCCC--CcccceeEEccccCeEEcC-CCccccCCC
Q 015956 224 STDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHL--GSVNEGRIQCPYHGWEYST-DGKCEKMPS 296 (397)
Q Consensus 224 ssdL~~G~~~~v~i-~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~--G~v~~~~L~CPyHGW~Fd~-dG~~~~vP~ 296 (397)
..+|++|..+.+.+ .|..|+|+| .+|+++|++|.|||+|++|+. |.++++.|+||+|||+||. +|+++..|.
T Consensus 14 l~eL~~G~~~~v~v~~g~~I~V~~-~~G~~~A~~n~CpH~g~pL~~g~g~~~g~~V~CP~Hg~~FDLrTG~~~~~p~ 89 (107)
T cd03473 14 VANLKEGINFFRNKEDGKKYIIYK-SKSELKACKNQCKHQGGLFIKDIEDLDGRTVRCTKHNWKLDVSTMKYVNPPD 89 (107)
T ss_pred HhcCCCCceEEEEecCCcEEEEEE-ECCEEEEEcCCCCCCCccccCCcceEeCCEEEeCCCCCEEEcCCCCCccCCc
Confidence 48999999999999 999999999 589999999999999999998 4588899999999999995 999988776
No 43
>PRK13474 cytochrome b6-f complex iron-sulfur subunit; Provisional
Probab=99.56 E-value=1.4e-14 Score=133.78 Aligned_cols=88 Identities=19% Similarity=0.423 Sum_probs=74.0
Q ss_pred CCCCCceeEe-eCCee-EEEEEcCCCcE--EEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCCCcccccC
Q 015956 227 LKDDTMVPFD-CFEEP-WVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNV 302 (397)
Q Consensus 227 L~~G~~~~v~-i~G~~-IVV~R~~dG~i--~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~ 302 (397)
.++|+...+. +.|.+ +++++ .+|++ +|+++.|||.||+|..+..+ +.+.||+|||+||.+|+.+..|.. .
T Consensus 72 ~~~g~~~~v~~~~g~~~~lv~~-~~g~~~~~a~~~~CtH~gc~l~~~~~~-~~~~CP~Hgs~Fd~tG~~~~gPa~----~ 145 (178)
T PRK13474 72 HPAGDRSLVQGLKGDPTYLVVE-EDGTIASYGINAVCTHLGCVVPWNSGE-NKFQCPCHGSQYDATGKVVRGPAP----L 145 (178)
T ss_pred CCCCCcEEEEEcCCCeEEEEEe-CCCEEEEEEecCCCCCCCCccccccCC-CEEEecCcCCEECCCCCCccCCCC----C
Confidence 3678777776 56767 55555 68999 67799999999999988744 699999999999999999988874 4
Q ss_pred CccccceEEEcCEEEEeC
Q 015956 303 KIKSLPCFEQEGMIWIWP 320 (397)
Q Consensus 303 ~L~~ypV~e~~G~IwV~l 320 (397)
.|+.|++++++|.|||.+
T Consensus 146 ~L~~y~v~v~~g~v~v~~ 163 (178)
T PRK13474 146 SLALVHVTVEDDKVLFSP 163 (178)
T ss_pred CCCeEeEEEECCEEEEEE
Confidence 899999999999999975
No 44
>TIGR01416 Rieske_proteo ubiquinol-cytochrome c reductase, iron-sulfur subunit. Most members of this family have a recognizable twin-arginine translocation (tat) signal sequence (DeltaPh-dependent translocation in chloroplast) for transport across the membrane with the 2Fe-2S group already bound. These signal sequences include a motif resembling RRxFLK before the transmembrane helix.
Probab=99.44 E-value=4.4e-13 Score=123.40 Aligned_cols=93 Identities=20% Similarity=0.271 Sum_probs=78.5
Q ss_pred eEEeeecCCCCCCCceeEeeCCeeEEEEEcC----------------------------------CCcEEEEeecCCCCC
Q 015956 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK----------------------------------DGIPGCVQNTCAHRA 263 (397)
Q Consensus 218 W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~----------------------------------dG~i~A~~N~CPHRG 263 (397)
|..| ..++|++|+.+.+.+.|.+++|+|.. +++++|+.+.|||.|
T Consensus 41 ~~~v-~l~eL~pG~~~~v~~~GkpI~I~~~t~~~~~~~~~~~~~~l~Dp~~~~~~~~~~~~~r~~~~~~~a~~~~CtH~G 119 (174)
T TIGR01416 41 PTEV-DVSKIQPGQQLTVEWRGKPVFIRRRTKKEIDALKALDLGALKDPNSEAQQPDYARVKRSGKPEWLVVIGICTHLG 119 (174)
T ss_pred cEEE-EHHHCCCCCeEEEEECCeEEEEEeCCHHHhhhhhccchhhcCCCcccccCcchhhhhhccCCcEEEEEeccCCCC
Confidence 5677 79999999999999999999999851 489999999999999
Q ss_pred CCCCC-Cccc-ceeEEccccCeEEcCCCccccCCCcccccCCccccceEEEcCE
Q 015956 264 CPLHL-GSVN-EGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGM 315 (397)
Q Consensus 264 a~Ls~-G~v~-~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e~~G~ 315 (397)
|.+.. +... .+.+.|||||++||.+|+.+..|.. ..|+.||++..++.
T Consensus 120 c~~~~~~~~~~~~~~~CPcHgs~Fd~~G~~~~gpa~----~~L~~~~~~~~~~~ 169 (174)
T TIGR01416 120 CIPTYGPEEGDKGGFFCPCHGSHYDTAGRVRKGPAP----LNLPVPPYKFLSDT 169 (174)
T ss_pred CccccccCCCCCCEEEeCCCCCEECCCCcEecCCCC----CCCCCCCEEEcCCC
Confidence 87753 3333 4689999999999999999988874 48999999987653
No 45
>cd03475 Rieske_SoxF_SoxL SoxF and SoxL family, Rieske domain; The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. SoxF is a subunit of the terminal oxidase supercomplex SoxM in the plasma membrane of Sulfolobus acidocaldarius that combines features of a cytochrome bc(1) complex and a cytochrome. The Rieske domain of SoxF has a 12 residue insertion which is not found in eukaryotic and bacterial Rieske proteins and is thought to influence the redox properties of the iron-sulfur cluster. SoxL is a Rieske protein which may be part of an archaeal bc-complex homologue whose physiological function is still unknown. SoxL has two features not seen in other Rieske proteins; (i) a significantly greater distance between the two cluster-binding sites and (ii) an unexpected Pro - Asp substitution at one of the cluster binding sites. SoxF and SoxL are found in archaea and in bacteria.
Probab=99.16 E-value=1.3e-10 Score=106.64 Aligned_cols=68 Identities=15% Similarity=0.199 Sum_probs=54.3
Q ss_pred CCCcEEEEeecCCCCCCCCCC---------------CcccceeEEccccCeEEcC-CC-ccccCCCcccccCCccccceE
Q 015956 248 KDGIPGCVQNTCAHRACPLHL---------------GSVNEGRIQCPYHGWEYST-DG-KCEKMPSTQLRNVKIKSLPCF 310 (397)
Q Consensus 248 ~dG~i~A~~N~CPHRGa~Ls~---------------G~v~~~~L~CPyHGW~Fd~-dG-~~~~vP~~~~~~~~L~~ypV~ 310 (397)
.+|+++|+++.|||+||+|.. |...++.|.||+|||+||. +| ..+..|.. ..|..|+++
T Consensus 73 p~g~IvA~S~iCpHlGc~l~~~~~y~~~~~~~~~~~g~~~~~~i~CPcHgS~FD~~tGg~v~~GPA~----~pLp~~~L~ 148 (171)
T cd03475 73 PNKSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIHCCCHGSTYDPYKGGVVLTGPAP----RPLPAVILE 148 (171)
T ss_pred CCCEEEEEeCcCCCCCCcccccccccccccccccccccccCCEEEcCCCCCEEeCCCCCeEcCCCCC----CCcCEeEEE
Confidence 378999999999999998752 4456789999999999997 55 45555653 479999998
Q ss_pred EEc--CEEEEe
Q 015956 311 EQE--GMIWIW 319 (397)
Q Consensus 311 e~~--G~IwV~ 319 (397)
+++ |.||.-
T Consensus 149 ~d~~~d~iyAv 159 (171)
T cd03475 149 YDSSTDDLYAV 159 (171)
T ss_pred EeCCCCcEEEE
Confidence 884 778874
No 46
>COG0723 QcrA Rieske Fe-S protein [Energy production and conversion]
Probab=98.83 E-value=5.5e-09 Score=95.85 Aligned_cols=75 Identities=24% Similarity=0.397 Sum_probs=59.5
Q ss_pred eeEEEEEcCCC-----cEEEEeecCCCCCCCCCC-CcccceeEEccccCeEEcCCCccccCCCcccccCCccccceEEEc
Q 015956 240 EPWVIFRGKDG-----IPGCVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQE 313 (397)
Q Consensus 240 ~~IVV~R~~dG-----~i~A~~N~CPHRGa~Ls~-G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e~~ 313 (397)
.....++..++ ++.|+...|+|.||...+ +....+.|.|||||.+||.+|+.+..|+. ..|..++++..+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~a~~~iCtHlGC~~~~~~~~~~~~~~CPCHGS~yd~~g~vv~GPA~----~~L~~~~~~~~~ 159 (177)
T COG0723 84 PKGGVTRDGDGGVGNKEIVAYSAICTHLGCTVPWNNAGAEGGFFCPCHGSRYDPDGGVVKGPAP----RPLPIPPLEYDS 159 (177)
T ss_pred ccccceecccCCCCCccEEEEeeeccCCCCccCcccCCCCCeEEccCCCCeEcCCCCeeCCCCC----CCcCCceEEEeC
Confidence 44444454444 455999999999999998 55567999999999999999999988884 578999998887
Q ss_pred CEEEE
Q 015956 314 GMIWI 318 (397)
Q Consensus 314 G~IwV 318 (397)
+.+++
T Consensus 160 d~~~~ 164 (177)
T COG0723 160 DKLYL 164 (177)
T ss_pred CceEE
Confidence 74444
No 47
>TIGR03171 soxL2 Rieske iron-sulfur protein SoxL2. This iron-sulfur protein is found in a contiguous genomic region with subunits of cytochrome b558/566 in several archaeal species, and appears to be part of a cytochrome bc1-analogous system.
Probab=98.47 E-value=3e-07 Score=91.63 Aligned_cols=69 Identities=14% Similarity=0.230 Sum_probs=52.7
Q ss_pred cCCCcEEEEeecCCCCCCCCCCC----------------------------ccc---ceeEEccccCeEEcCC--Ccccc
Q 015956 247 GKDGIPGCVQNTCAHRACPLHLG----------------------------SVN---EGRIQCPYHGWEYSTD--GKCEK 293 (397)
Q Consensus 247 ~~dG~i~A~~N~CPHRGa~Ls~G----------------------------~v~---~~~L~CPyHGW~Fd~d--G~~~~ 293 (397)
+.++.|.||+..|+|+||++..- .-. .+.+.|||||.+||.+ |+.+.
T Consensus 173 Gp~~~IVAyS~IC~H~GC~~~~~~~Ypp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CPCHgS~FD~~~gg~Vv~ 252 (321)
T TIGR03171 173 GPNKSIVAYSAICQHLGCTPPYIHFYPPNYVNPSQLTAPEPDQLTAQALLAAKQANVPALIHCDCHGSTYDPYHGAAVLT 252 (321)
T ss_pred CCCCCEEEEecccCcCCCCcchhhccCcccccccccccccccccchhhhhhhhccCCCCeEECCCCCCEECCCCCCceeC
Confidence 34688999999999999988321 001 1489999999999963 57888
Q ss_pred CCCcccccCCccccceEEE--cCEEEEe
Q 015956 294 MPSTQLRNVKIKSLPCFEQ--EGMIWIW 319 (397)
Q Consensus 294 vP~~~~~~~~L~~ypV~e~--~G~IwV~ 319 (397)
.|... .|..++++.. +|.||+-
T Consensus 253 GPA~r----pLp~i~l~~d~~~~~l~Av 276 (321)
T TIGR03171 253 GPTVR----PLPAVILEWDSSTDYLYAI 276 (321)
T ss_pred CCCCC----CCCcceEEEeCCCCeEEEE
Confidence 88853 7888888886 4677774
No 48
>KOG1671 consensus Ubiquinol cytochrome c reductase, subunit RIP1 [Energy production and conversion]
Probab=98.37 E-value=4.3e-07 Score=84.90 Aligned_cols=75 Identities=27% Similarity=0.392 Sum_probs=63.0
Q ss_pred ecCCCCCCCceeEeeCCeeEEEE--------------------------EcCCCcEEEEeecCCCCCCCCCCCcccceeE
Q 015956 223 FSTDLKDDTMVPFDCFEEPWVIF--------------------------RGKDGIPGCVQNTCAHRACPLHLGSVNEGRI 276 (397)
Q Consensus 223 ~ssdL~~G~~~~v~i~G~~IVV~--------------------------R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L 276 (397)
..++||+|.-.+++-.|.|+++- |.++-++.++..+|+|.||-.....++.+.+
T Consensus 91 ~l~~IPeGk~~~~kwrGkpvfirhrt~~ei~~~r~V~~s~lrDPq~d~~rvk~~ewl~~igVCThLGCVp~~~AGd~gg~ 170 (210)
T KOG1671|consen 91 KLSDIPEGKTVAFKWRGKPVFIRHRTKAEIEGERNVPQSTLRDPQDDVDRVKKPEWLVVIGVCTHLGCVPIANAGDYGGY 170 (210)
T ss_pred eeecCCCCCCcceeccCCceEEeeccccccccccccchhhccCchhhhhhccCcceEEEEeeeccccccccccccccCce
Confidence 46778888888888888887773 3445567999999999999988777777899
Q ss_pred EccccCeEEcCCCccccCCCc
Q 015956 277 QCPYHGWEYSTDGKCEKMPST 297 (397)
Q Consensus 277 ~CPyHGW~Fd~dG~~~~vP~~ 297 (397)
-|||||.+||..|+....|+.
T Consensus 171 ~CPCHGSHYdasGRIrkGPAP 191 (210)
T KOG1671|consen 171 YCPCHGSHYDASGRIRKGPAP 191 (210)
T ss_pred ecccccccccccCceecCCCC
Confidence 999999999999999999873
No 49
>cd08884 RHO_alpha_C_GbcA-like C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of GbcA (glycine betaine catabolism A) from Pseudomonas aeruginosa PAO1 and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents from the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are the catalytic components an
Probab=97.89 E-value=4.8e-06 Score=77.67 Aligned_cols=38 Identities=16% Similarity=0.237 Sum_probs=32.8
Q ss_pred CceEeEEEEEEEecChhhHHHhhcCCCCCCccCccccc
Q 015956 337 GFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (397)
Q Consensus 337 g~~~~~~~~~~~~~NWKl~vEN~lD~yH~p~vH~~tf~ 374 (397)
.+.+.....+.++||||+++||++|+||++++|+++..
T Consensus 7 ~~~~~~~~~~~~~~NWK~~~en~~e~yH~~~~H~~~~~ 44 (205)
T cd08884 7 NLKVAHRISYEVAANWKLVVENYRECYHCAGVHPELAR 44 (205)
T ss_pred hcEEccceEEEEccCceehhHhCcccccCccccHHHHh
Confidence 45555667889999999999999999999999998764
No 50
>PF00848 Ring_hydroxyl_A: Ring hydroxylating alpha subunit (catalytic domain); InterPro: IPR015879 Aromatic ring hydroxylating dioxygenases are multicomponent 1,2-dioxygenase complexes that convert closed-ring structures to non-aromatic cis-diols []. The complex has both hydroxylase and electron transfer components. The hydroxylase component is itself composed of two subunits: an alpha-subunit of about 50 kDa, and a beta-subunit of about 20 kDa. The electron transfer component is either composed of two subunits: a ferredoxin and a ferredoxin reductase or by a single bifunctional ferredoxin/reductase subunit. Sequence analysis of hydroxylase subunits of ring hydroxylating systems (including toluene, benzene and napthalene 1,2-dioxygenases) suggests they are derived from a common ancestor []. The alpha-subunit binds both a Rieske-like 2Fe-2S cluster and an iron atom: conserved Cys and His residues in the N-terminal region may provide 2Fe-2S ligands, while conserved His and Tyr residues may coordinate the iron. The beta subunit may be responsible for the substrate specificity of the dioxygenase system [].; GO: 0005506 iron ion binding, 0016708 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of two atoms of oxygen into one donor, 0051537 2 iron, 2 sulfur cluster binding, 0019439 aromatic compound catabolic process, 0055114 oxidation-reduction process; PDB: 1WQL_A 3EN1_A 3EQQ_A 2CKF_A 2BMR_A 2BMQ_A 2BMO_A 2GBW_E 2GBX_C 2XRX_A ....
Probab=97.82 E-value=2.3e-06 Score=76.58 Aligned_cols=35 Identities=29% Similarity=0.306 Sum_probs=28.6
Q ss_pred EEEEecChhhHHHhhcCCCCCCccCcccccCCCCC
Q 015956 345 VMELPIEHGLLLDNLLDLAHAPFTHTSTFAKGWSV 379 (397)
Q Consensus 345 ~~~~~~NWKl~vEN~lD~yH~p~vH~~tf~~g~~v 379 (397)
.++++||||+++||++|+||++++|+++++.....
T Consensus 11 ~~~~~~NWK~~~EN~~e~YH~~~~H~~~~~~~~~~ 45 (209)
T PF00848_consen 11 RYEVDCNWKLAVENFLEGYHVPFLHPSTLGFFDPS 45 (209)
T ss_dssp HHHESS-HHHHHHHHHHCTTHHHHTHHHHHHHSCT
T ss_pred EEEecccceEHHHhCcccccccccccchhhhhhcc
Confidence 34689999999999999999999999987654433
No 51
>cd08881 RHO_alpha_C_NDO-like C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related aromatic ring hydroxylating dioxygenases. C-terminal catalytic domain of the oxygenase alpha subunit of naphthalene 1,2-dioxygenase (NDO) and related Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs, also known as aromatic ring hydroxylating dioxygenases). This domain binds non-heme Fe(II). RHOs utilize non-heme Fe(II) to catalyze the addition of hydroxyl groups to the aromatic ring, an initial step in the oxidative degradation of aromatic compounds. RHOs are composed of either two or three protein components, and are comprised of an electron transport chain (ETC) and an oxygenase. The ETC transfers reducing equivalents form the electron donor to the oxygenase component, which in turn transfers electrons to the oxygen molecules. The oxygenase components are oligomers, either (alpha)n or (alpha)n(beta)n. The alpha subunits are th
Probab=97.37 E-value=4.6e-05 Score=71.91 Aligned_cols=35 Identities=23% Similarity=0.217 Sum_probs=30.8
Q ss_pred EEEEEEecChhhHHHhhc-CCCCCCccCcccccCCC
Q 015956 343 EIVMELPIEHGLLLDNLL-DLAHAPFTHTSTFAKGW 377 (397)
Q Consensus 343 ~~~~~~~~NWKl~vEN~l-D~yH~p~vH~~tf~~g~ 377 (397)
...+.++||||+++|||+ |+||++++|.+++.-+.
T Consensus 8 ~~~~~~~~NWK~~~en~~~d~yH~~~~H~~~~~~~~ 43 (206)
T cd08881 8 PQKWVIKANWKLAAENFAGDGYHTGTTHASALEAGL 43 (206)
T ss_pred cEEEEecCcceehhhccccccccchhhhHHHHHhhC
Confidence 467789999999999999 99999999998886544
No 52
>PF11723 Aromatic_hydrox: Homotrimeric ring hydroxylase; InterPro: IPR021028 This entry represents the catalytic domain from a family of homotrimeric enzymes that hydroxylate aromatic compounds, including 2-oxo-1,2-dihydroquinoline 8-monooxygenase from Pseudomonas putida and carbazole 1,9a-dioxygenase from Janthinobacterium. The catalytic domain is found C-termnial to the iron-sulphur-binding Rieske domain and is composed of antiparallel beta sheets and alpha helices []. It is part of a much larger superfamily of lipid binding domains which form a common fold that works as a versatile scaffold for binding bulky ligands [].; PDB: 1Z03_D 1Z01_E 1Z02_F 2DE6_A 2DE7_C 1WW9_A 2DE5_C 3GKQ_F 3GCF_L.
Probab=95.52 E-value=0.013 Score=56.81 Aligned_cols=45 Identities=24% Similarity=0.420 Sum_probs=32.0
Q ss_pred CCceEeEEEEEEEecChhhHHHhhcCCCCCCccCcccc---cCCCCCcce
Q 015956 336 SGFEIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTF---AKGWSVPRF 382 (397)
Q Consensus 336 ~g~~~~~~~~~~~~~NWKl~vEN~lD~yH~p~vH~~tf---~~g~~vp~~ 382 (397)
.+..+.+ ....+.|||.+.+||.+|..|+ |+|+.+. ++.|+.|-.
T Consensus 21 ~~~~~~g-~~~~~~~NWR~a~ENGfD~~H~-fiHk~s~~v~~~D~~lplG 68 (240)
T PF11723_consen 21 DDIVIFG-MHREINANWRLAAENGFDPGHI-FIHKDSIWVHANDWALPLG 68 (240)
T ss_dssp TTEEEEE-EEEEESS-HHHHHHHHT-TTGG-GGGTT-HHHHHTTBEE-SE
T ss_pred CcceEEe-eeeeccccchhhhhhCcCcceE-EEecCcceEEecceecccc
Confidence 3455443 5667899999999999999998 9999543 577877766
No 53
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.32 E-value=0.011 Score=62.45 Aligned_cols=38 Identities=34% Similarity=0.804 Sum_probs=34.2
Q ss_pred CCCCCCCCCcccceeEEccccCeEEcC-CCccccCCCcc
Q 015956 261 HRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMPSTQ 298 (397)
Q Consensus 261 HRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~vP~~~ 298 (397)
|.|+||..|....++++|||||..|+. +|....-|...
T Consensus 1 hygapl~~g~~s~g~v~cpwhgacfn~~~gdiedfP~~~ 39 (478)
T KOG1336|consen 1 HYGAPLAKGVLSRGRVRCPWHGACFNLSTGDIEDFPGLD 39 (478)
T ss_pred CCCcchhhccccCCcccccccceeecCCcCchhhCcCcc
Confidence 899999999888899999999999995 89988888753
No 54
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=80.65 E-value=8.4 Score=35.77 Aligned_cols=89 Identities=18% Similarity=0.339 Sum_probs=57.0
Q ss_pred ceeehhhHHHHhhhccc---cc----------ccccchh--hH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHH
Q 015956 70 KFLDVNQALEVARYDIQ---YC----------DWRARQD--VL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQED 133 (397)
Q Consensus 70 ~~~~~~~~~~~~~~~~~---~~----------~~~~~~d--~~-~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~ 133 (397)
++--||+|.++++.++. |+ ++ +.+| +| .+|++|+++.|+-++- +-..+..+++++...+++
T Consensus 53 ~s~~IN~AY~~L~~p~~Ra~YlL~l~g~~~~~~~-~~~d~~fLme~me~rE~le~~~~~~--d~~~l~~~~~~i~~~~~~ 129 (173)
T PRK00294 53 RSASLNEAYQTLKSPPRRARYLLALSGHEVPLEV-TVHDPEFLLQQMQLREELEELQDEA--DLAGVATFKRRLKAAQDE 129 (173)
T ss_pred HHHHHHHHHHHhCChhhhHHHHHHhcCCCCCccc-CCCCHHHHHHHHHHHHHHHhhcccc--cHHHHHHHHHHHHHHHHH
Confidence 57789999999876652 22 22 3333 33 8999999999886652 334466677777777777
Q ss_pred HHHHHHHhhhh---hhhHHHHhhhhHHHHHH
Q 015956 134 LAQAHRQVHIS---EARVATALDKLAYMEAL 161 (397)
Q Consensus 134 ~~~ah~~~h~~---~~Rv~~ald~~~~~~~~ 161 (397)
+.++-.+.=+. -....+.+.|+++|.++
T Consensus 130 l~~~~~~~~~~~~~~~~A~~~v~kl~f~~kl 160 (173)
T PRK00294 130 LNESFAACWDDAARREEAERLMRRMQFLDKL 160 (173)
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHHHHHH
Confidence 66655542111 13555777788887654
No 55
>PRK14161 heat shock protein GrpE; Provisional
Probab=77.89 E-value=11 Score=35.31 Aligned_cols=55 Identities=29% Similarity=0.418 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
||...-+|.++++++. +..|++|+++|++.|.+++.....-.+|.....+..+.|
T Consensus 12 ~~~~~~~~~~~~~~~e------i~~l~~e~~elkd~~lR~~AefeN~rkR~~ke~~~~~~~ 66 (178)
T PRK14161 12 TINDIAEEIVETANPE------ITALKAEIEELKDKLIRTTAEIDNTRKRLEKARDEAKDY 66 (178)
T ss_pred HHHHHHHhhhhhhHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778899998874 578999999999999999999999999999999888887
No 56
>PRK14127 cell division protein GpsB; Provisional
Probab=76.43 E-value=7.1 Score=33.84 Aligned_cols=42 Identities=31% Similarity=0.483 Sum_probs=21.9
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 015956 105 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (397)
Q Consensus 105 ~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~ 149 (397)
.|-+-|..+|.+|. +|-+|++.|++|+.+...++-..++|++
T Consensus 27 EVD~FLd~V~~dye---~l~~e~~~Lk~e~~~l~~~l~e~~~~~~ 68 (109)
T PRK14127 27 EVDKFLDDVIKDYE---AFQKEIEELQQENARLKAQVDELTKQVS 68 (109)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45566666666653 4444555555555555544444444443
No 57
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=76.41 E-value=18 Score=33.67 Aligned_cols=87 Identities=18% Similarity=0.244 Sum_probs=47.0
Q ss_pred eehhhHHHHhhhccccccc-------------ccchh---hHHHHHHHHHHHHhhChhhhhccchhhHHH----HHHHHH
Q 015956 72 LDVNQALEVARYDIQYCDW-------------RARQD---VLTIMLLHEKVVEVLNPLARDYKSIGTMKK----ELAELQ 131 (397)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~-------------~~~~d---~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~----~l~~lq 131 (397)
--+|+|.++++..+.-..+ .+..| |..||++|+++.|+-+ +.+...+..|+. ++.++.
T Consensus 57 ~~iN~AY~tL~~p~~Ra~Yll~l~G~~~~~e~~~~~d~~fLme~mE~rE~lee~~~--~~d~~~L~~l~~e~~~~~~~~~ 134 (176)
T PRK03578 57 TRANEAYQTLRDPLKRARYLLHLRGVDVQAENNTAMPPAFLMQQMEWREAIEDARA--ARDVDALDALLAELRDERRERY 134 (176)
T ss_pred HHHHHHHHHhCChhhHHHHHHHhcCCCCccccCCCCCHHHHHHHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHHHHHH
Confidence 5789999998877632221 23345 5589999999998642 112223443333 334444
Q ss_pred HHHHHHHHHhhhhhhhHHHHhhhhHHHHHH
Q 015956 132 EDLAQAHRQVHISEARVATALDKLAYMEAL 161 (397)
Q Consensus 132 ~~~~~ah~~~h~~~~Rv~~ald~~~~~~~~ 161 (397)
.++.++=..-++ -......+.+++++.++
T Consensus 135 ~~l~~~~~~~~d-~~~A~~~~~kL~y~~kl 163 (176)
T PRK03578 135 AELGALLDSRGD-DQAAAEAVRQLMFIEKL 163 (176)
T ss_pred HHHHHHHHcccc-HHHHHHHHHHHHHHHHH
Confidence 444433221122 12445666677776543
No 58
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=74.29 E-value=1.5 Score=37.85 Aligned_cols=31 Identities=26% Similarity=0.529 Sum_probs=24.5
Q ss_pred eecCCCCCCCCCCCcccceeEEccccCeEEcCC
Q 015956 256 QNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 288 (397)
Q Consensus 256 ~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~d 288 (397)
--+||++|++.-. ++..-++|||+|..|...
T Consensus 9 KR~Cp~CG~kFYD--Lnk~PivCP~CG~~~~~~ 39 (108)
T PF09538_consen 9 KRTCPSCGAKFYD--LNKDPIVCPKCGTEFPPE 39 (108)
T ss_pred cccCCCCcchhcc--CCCCCccCCCCCCccCcc
Confidence 3579999988763 233679999999999975
No 59
>COG1645 Uncharacterized Zn-finger containing protein [General function prediction only]
Probab=68.82 E-value=2.5 Score=37.80 Aligned_cols=29 Identities=24% Similarity=0.652 Sum_probs=25.1
Q ss_pred EeecCCCCCCCCCCCcccceeEEccccCeEEc
Q 015956 255 VQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS 286 (397)
Q Consensus 255 ~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd 286 (397)
+...||-+|+||.. .+|.+.||-||.++-
T Consensus 27 L~~hCp~Cg~PLF~---KdG~v~CPvC~~~~~ 55 (131)
T COG1645 27 LAKHCPKCGTPLFR---KDGEVFCPVCGYREV 55 (131)
T ss_pred HHhhCcccCCccee---eCCeEECCCCCceEE
Confidence 45789999999997 468999999998766
No 60
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=68.01 E-value=28 Score=29.69 Aligned_cols=51 Identities=12% Similarity=-0.005 Sum_probs=38.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHhhhcCC
Q 015956 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQD 169 (397)
Q Consensus 119 ~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~~~~~r~r~l~~ 169 (397)
+...+++|++.+++|+++..++....++.|+.-=+.-..+|++.|.+|...
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~v 78 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMV 78 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCC
Confidence 467788888888888888888888787777743343567788999888664
No 61
>PF07820 TraC: TraC-like protein; InterPro: IPR012930 The members of this family are sequences that are similar to TraC (Q84HT8 from SWISSPROT) from Rhizobium etli. The gene encoding this protein is one of a group of genes found on plasmid p42a of Rhizobium etli (strain CFN 42/ATCC 51251) that are thought to be involved in the process of plasmid self-transmission. Mobilisation of plasmid p42a is of importance as it is required for transfer of plasmid p42d, the symbiotic plasmid which carries most of the genes required for nodulation and nitrogen fixation by this symbiotic bacterium. The predicted protein products of p42a are similar to known transfer proteins of Agrobacterium tumefaciens plasmid pTiC58 []. ; GO: 0000746 conjugation
Probab=66.74 E-value=28 Score=29.40 Aligned_cols=33 Identities=33% Similarity=0.405 Sum_probs=27.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 015956 117 YKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (397)
Q Consensus 117 ~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~ 149 (397)
.||+.+++.|++-|||++.++-.+.----.|+.
T Consensus 1 Kk~~s~I~~eIekLqe~lk~~e~keaERigr~A 33 (92)
T PF07820_consen 1 KKSSSKIREEIEKLQEQLKQAETKEAERIGRIA 33 (92)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999998887665555554
No 62
>PRK14156 heat shock protein GrpE; Provisional
Probab=65.46 E-value=28 Score=32.61 Aligned_cols=55 Identities=16% Similarity=0.239 Sum_probs=45.3
Q ss_pred HHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 103 HEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 103 ~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
.+.|.||..+-+-+.+ +..|+++++.|++.+.++......-.+|........+.+
T Consensus 20 ~~~~~~~~~~~~~~~~-l~~l~~e~~elkd~~lR~~AEfeN~rKR~~rE~e~~~~~ 74 (177)
T PRK14156 20 EETVEEVVEETPEKSE-LELANERADEFENKYLRAHAEMQNIQRRANEERQQLQRY 74 (177)
T ss_pred HHHHHHHHhhcccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666655555555 788999999999999999999999999999888887776
No 63
>PF13118 DUF3972: Protein of unknown function (DUF3972)
Probab=64.21 E-value=15 Score=32.73 Aligned_cols=47 Identities=26% Similarity=0.342 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHHhhChhhhhccc-hhhHHHHHHHHHHHHHHHHHHhh
Q 015956 96 VLTIMLLHEKVVEVLNPLARDYKS-IGTMKKELAELQEDLAQAHRQVH 142 (397)
Q Consensus 96 ~~~~~~~~~~v~~~l~~~~~~~~~-~~~~~~~l~~lq~~~~~ah~~~h 142 (397)
.-||..+|+||+....+--+-.|+ ..-||+-|..+||-|.+-..-++
T Consensus 69 i~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~ 116 (126)
T PF13118_consen 69 IGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIE 116 (126)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 449999999999988875554443 34567777778777755444333
No 64
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=63.75 E-value=47 Score=29.51 Aligned_cols=87 Identities=15% Similarity=0.131 Sum_probs=64.4
Q ss_pred CCceeehhhHHHHhhhcccccccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhh
Q 015956 68 KGKFLDVNQALEVARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEAR 147 (397)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~R 147 (397)
.+...|+.+.+.++-.=| -+-+.|.-.-+.+.+++-..-+.+.+-...+..|+.+++.++.+++.++.+.-..+..
T Consensus 27 ~~~~~~~~~vin~i~~Ll----~~~~r~~~~~e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~ 102 (151)
T PF11559_consen 27 EESEDNDVRVINCIYDLL----QQRDRDMEQREDLSDKLRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQ 102 (151)
T ss_pred ccccccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666542212 1234566677778888888888888888889999999999999999998888888888
Q ss_pred HHHHhhhhHHH
Q 015956 148 VATALDKLAYM 158 (397)
Q Consensus 148 v~~ald~~~~~ 158 (397)
+.++...+...
T Consensus 103 ~~~~~~~~k~~ 113 (151)
T PF11559_consen 103 LKSLEAKLKQE 113 (151)
T ss_pred HHHHHHHHHHH
Confidence 88777776665
No 65
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=62.15 E-value=5.9 Score=30.54 Aligned_cols=33 Identities=21% Similarity=0.388 Sum_probs=27.7
Q ss_pred EeecCCCCCCCCCCCcccceeEEccccCeEEcCC
Q 015956 255 VQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 288 (397)
Q Consensus 255 ~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~d 288 (397)
.+-.||+.|..... ...+..+.||-.|..+|.|
T Consensus 27 TSq~C~~CG~~~~~-~~~~r~~~C~~Cg~~~~rD 59 (69)
T PF07282_consen 27 TSQTCPRCGHRNKK-RRSGRVFTCPNCGFEMDRD 59 (69)
T ss_pred CccCccCccccccc-ccccceEEcCCCCCEECcH
Confidence 57889999988877 4467899999999999964
No 66
>PF10080 DUF2318: Predicted membrane protein (DUF2318); InterPro: IPR018758 This domain of unknown function is found in hypothetical bacterial membrane proteins with no known function.
Probab=61.63 E-value=43 Score=28.66 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=52.7
Q ss_pred CCCCCceeEee--CC--eeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC------CCccccCCC
Q 015956 227 LKDDTMVPFDC--FE--EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST------DGKCEKMPS 296 (397)
Q Consensus 227 L~~G~~~~v~i--~G--~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~------dG~~~~vP~ 296 (397)
|.+|+...+.+ .| .++++++..+|.+.+-.|.|-=++.. ..- ..++.++|-.+|-+|.. .|.|-.+|
T Consensus 2 v~Dgklh~y~y~~~G~~vrff~i~~~dg~~~va~daCeiC~~~-GY~-q~g~~lvC~~C~~~~~~~~ig~~~GGCNP~P- 78 (102)
T PF10080_consen 2 VKDGKLHRYAYTDDGKEVRFFAIKKPDGSYRVAFDACEICGPK-GYY-QEGDQLVCKNCGVRFNLPTIGGKSGGCNPIP- 78 (102)
T ss_pred ccCCcEEEEEEcCCCEEEEEEEEECCCCCEEEEEEeccccCCC-ceE-EECCEEEEecCCCEEehhhcccccCCCCccC-
Confidence 44555444444 33 45688888999999999999776311 111 35789999999999994 23333222
Q ss_pred cccccCCccccceEEEcCEEEEeC
Q 015956 297 TQLRNVKIKSLPCFEQEGMIWIWP 320 (397)
Q Consensus 297 ~~~~~~~L~~ypV~e~~G~IwV~l 320 (397)
++-.+.+|.|-|..
T Consensus 79 ----------~~~~~~~~~I~I~~ 92 (102)
T PF10080_consen 79 ----------LPYTVDGGNIIIDQ 92 (102)
T ss_pred ----------CceEecCCeEEEeH
Confidence 25566788888753
No 67
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=61.09 E-value=6.7 Score=33.10 Aligned_cols=32 Identities=19% Similarity=0.461 Sum_probs=26.6
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHH
Q 015956 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHR 139 (397)
Q Consensus 108 ~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~ 139 (397)
+++++..+-.++|.+|.|.+..||=||+.|..
T Consensus 63 di~~eV~kTh~aIq~LdKtIS~LEMELAaARa 94 (95)
T PF13334_consen 63 DIMGEVSKTHEAIQSLDKTISSLEMELAAARA 94 (95)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35556666778899999999999999999974
No 68
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=60.63 E-value=25 Score=27.25 Aligned_cols=54 Identities=17% Similarity=0.333 Sum_probs=39.8
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHhhhcC
Q 015956 115 RDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 168 (397)
Q Consensus 115 ~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~~~~~r~r~l~ 168 (397)
..+..+..++.|++.||.++++...+.-..+..++.--+.-..+|++.|.++..
T Consensus 14 ~~~~~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR~~lgm 67 (80)
T PF04977_consen 14 SGYSRYYQLNQEIAELQKEIEELKKENEELKEEIERLKNDPDYIEKVAREKLGM 67 (80)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcCC
Confidence 344556778888888888888888888877777765435666778888888754
No 69
>PF09740 DUF2043: Uncharacterized conserved protein (DUF2043); InterPro: IPR018610 This entry consists of uncharacterised proteins of unknown function. They contain three conserved cysteines and a {CP}{y/l}{HG} motif.
Probab=57.40 E-value=5.5 Score=34.63 Aligned_cols=26 Identities=35% Similarity=0.690 Sum_probs=19.9
Q ss_pred CCCCCCCccc--ceeEEccccCeEEcCC
Q 015956 263 ACPLHLGSVN--EGRIQCPYHGWEYSTD 288 (397)
Q Consensus 263 Ga~Ls~G~v~--~~~L~CPyHGW~Fd~d 288 (397)
.+||-.|.+. -+.++||+||=--+.|
T Consensus 73 rAPL~~G~LC~RrD~~kCPfHG~IIpRD 100 (110)
T PF09740_consen 73 RAPLPNGGLCPRRDRKKCPFHGKIIPRD 100 (110)
T ss_pred cCCCCCCCcCCccCcccCCCCCcccCCC
Confidence 5778777654 3578999999988854
No 70
>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]
Probab=57.28 E-value=19 Score=34.14 Aligned_cols=57 Identities=19% Similarity=0.347 Sum_probs=43.6
Q ss_pred cCCCCCCCceeEeeCC--eeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeE
Q 015956 224 STDLKDDTMVPFDCFE--EPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWE 284 (397)
Q Consensus 224 ssdL~~G~~~~v~i~G--~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~ 284 (397)
++++.+||.+...+-. .++.+.= ....+-++..+|+-++.+|.. .+..+.||-+|-+
T Consensus 116 ~d~f~~GDivrA~Vis~~~~~~Lst-~~~dlGVI~A~CsrC~~~L~~---~~~~l~Cp~Cg~t 174 (188)
T COG1096 116 SDAFRIGDIVRARVISTGDPIQLST-KGNDLGVIYARCSRCRAPLVK---KGNMLKCPNCGNT 174 (188)
T ss_pred ccccccccEEEEEEEecCCCeEEEe-cCCcceEEEEEccCCCcceEE---cCcEEECCCCCCE
Confidence 4667889887776633 5666654 466788888899999999986 4689999998865
No 71
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=54.70 E-value=59 Score=25.75 Aligned_cols=58 Identities=19% Similarity=0.216 Sum_probs=44.9
Q ss_pred HHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHH
Q 015956 102 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (397)
Q Consensus 102 ~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~~ 159 (397)
+-+||...|.--.+=..=...|+.+++.++.|=++=..+...-..||+.-++|+.-||
T Consensus 5 Le~kle~Li~~~~~L~~EN~~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk~le 62 (65)
T TIGR02449 5 LAAQVEHLLEYLERLKSENRLLRAQEKTWREERAQLLEKNEQARQKVEAMITRLKALE 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3455555554433333336689999999999999999999999999999999998876
No 72
>PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C.
Probab=52.40 E-value=8.5 Score=26.60 Aligned_cols=29 Identities=24% Similarity=0.481 Sum_probs=16.2
Q ss_pred ecCCCCCCCCCCCcc---cceeEEccccCeEE
Q 015956 257 NTCAHRACPLHLGSV---NEGRIQCPYHGWEY 285 (397)
Q Consensus 257 N~CPHRGa~Ls~G~v---~~~~L~CPyHGW~F 285 (397)
+.||+.|.+|..... +-.+.+||-.||..
T Consensus 1 kfC~~CG~~l~~~ip~gd~r~R~vC~~Cg~Ih 32 (34)
T PF14803_consen 1 KFCPQCGGPLERRIPEGDDRERLVCPACGFIH 32 (34)
T ss_dssp -B-TTT--B-EEE--TT-SS-EEEETTTTEEE
T ss_pred CccccccChhhhhcCCCCCccceECCCCCCEE
Confidence 579999999875433 23589999988853
No 73
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=52.20 E-value=7 Score=34.85 Aligned_cols=31 Identities=16% Similarity=0.422 Sum_probs=24.6
Q ss_pred eecCCCCCCCCCCCcccceeEEccccCeEEcCC
Q 015956 256 QNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTD 288 (397)
Q Consensus 256 ~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~d 288 (397)
...||++|.+... ++..-++|||+|..|...
T Consensus 9 Kr~Cp~cg~kFYD--Lnk~p~vcP~cg~~~~~~ 39 (129)
T TIGR02300 9 KRICPNTGSKFYD--LNRRPAVSPYTGEQFPPE 39 (129)
T ss_pred cccCCCcCccccc--cCCCCccCCCcCCccCcc
Confidence 3579999988763 234789999999999865
No 74
>COG1938 Archaeal enzymes of ATP-grasp superfamily [General function prediction only]
Probab=51.71 E-value=29 Score=34.17 Aligned_cols=60 Identities=27% Similarity=0.238 Sum_probs=50.1
Q ss_pred hhcccccccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 015956 82 RYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (397)
Q Consensus 82 ~~~~~~~~~~~~~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~a 151 (397)
-.+.++-|=| |=..|+|+||++..=.-++..|.||-+.+.+++.+-++|+.-.++|+++.
T Consensus 178 et~~~~PDP~----------AAa~vve~lnk~~~l~V~td~L~keAe~i~~~lekl~eq~~~~~~~~~~~ 237 (244)
T COG1938 178 ETFGDRPDPR----------AAARVVEALNKMLGLNVDTDKLEKEAEEIEEQLEKLAEQLEKEEERVERE 237 (244)
T ss_pred cccCCCCChH----------HHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3455566554 45688999999999999999999999999999999999999888888754
No 75
>PRK00420 hypothetical protein; Validated
Probab=51.58 E-value=11 Score=32.95 Aligned_cols=34 Identities=26% Similarity=0.574 Sum_probs=27.5
Q ss_pred EeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCc
Q 015956 255 VQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGK 290 (397)
Q Consensus 255 ~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~ 290 (397)
+...||-+|.||..- .++...||-||-.+.- +|+
T Consensus 22 l~~~CP~Cg~pLf~l--k~g~~~Cp~Cg~~~~v~~~e 56 (112)
T PRK00420 22 LSKHCPVCGLPLFEL--KDGEVVCPVHGKVYIVKSDE 56 (112)
T ss_pred ccCCCCCCCCcceec--CCCceECCCCCCeeeeccHH
Confidence 568999999999854 4679999999998884 443
No 76
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=48.71 E-value=78 Score=29.41 Aligned_cols=85 Identities=22% Similarity=0.347 Sum_probs=44.9
Q ss_pred eehhhHHHHhhhcc---ccc-cc----------ccchhh--H-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHH---
Q 015956 72 LDVNQALEVARYDI---QYC-DW----------RARQDV--L-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQ--- 131 (397)
Q Consensus 72 ~~~~~~~~~~~~~~---~~~-~~----------~~~~d~--~-~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq--- 131 (397)
--||+|..+++..+ +|+ .- .+..|. | .+|++|++++|+ .-+++...+..|++++....
T Consensus 53 s~iN~AY~tLkdPl~RA~YLL~L~~g~~~~~e~~~~~d~~fLme~ME~rE~lee~--~~~~d~~~L~~l~~~v~~~~~~~ 130 (173)
T PRK01773 53 AEVNDALQILKDPILRAEAIIALNTGEQQNLEEKSTQDMAFLMQQMEWREQLEEI--EQQQDEDALTAFSKEIKQEQQAI 130 (173)
T ss_pred HHHHHHHHHHCChHHHHHHHHHhccCCCCCcccccCCCHHHHHHHHHHHHHHHhh--cccCCHHHHHHHHHHHHHHHHHH
Confidence 45788888877766 232 22 233332 2 788999999886 22445555555555544433
Q ss_pred -HHHHHHHHHhhhhhhhHHHHhhhhHHHHH
Q 015956 132 -EDLAQAHRQVHISEARVATALDKLAYMEA 160 (397)
Q Consensus 132 -~~~~~ah~~~h~~~~Rv~~ald~~~~~~~ 160 (397)
.++.+|=.. .+- ......+.|++++.+
T Consensus 131 ~~~l~~~~~~-~d~-~~A~~~~~rL~y~~k 158 (173)
T PRK01773 131 LTELSTALNS-QQW-QQASQINDRLRFIKK 158 (173)
T ss_pred HHHHHHHHhc-CCH-HHHHHHHHHHHHHHH
Confidence 333333211 111 244455566666544
No 77
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=48.65 E-value=91 Score=25.00 Aligned_cols=32 Identities=28% Similarity=0.313 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHH
Q 015956 126 ELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (397)
Q Consensus 126 ~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~ 157 (397)
+-..|++|..+-...-.....|+..-|+|+..
T Consensus 40 e~~~L~~en~~L~~e~~~~~~rl~~LL~kl~~ 71 (72)
T PF06005_consen 40 ENEELKEENEQLKQERNAWQERLRSLLGKLEE 71 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 35556666666666667777888888888654
No 78
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=47.90 E-value=16 Score=39.22 Aligned_cols=30 Identities=23% Similarity=0.603 Sum_probs=23.9
Q ss_pred ecCCCCCCCCCCCcccceeEEccccCeEEcC
Q 015956 257 NTCAHRACPLHLGSVNEGRIQCPYHGWEYST 287 (397)
Q Consensus 257 N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~ 287 (397)
..|||++.+|..-. ..+.+.|.|+|++...
T Consensus 223 ~~C~~C~~~l~~h~-~~~~l~Ch~Cg~~~~~ 252 (505)
T TIGR00595 223 LCCPNCDVSLTYHK-KEGKLRCHYCGYQEPI 252 (505)
T ss_pred cCCCCCCCceEEec-CCCeEEcCCCcCcCCC
Confidence 46999998888654 3578999999999874
No 79
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein). HscB acts as a co-chaperone to regulate the ATPase activity and peptide-binding specificity of the molecular chaperone HscA, also known as HSC66 (HSP70 class). HscB proteins contain two domains, an N-terminal J-domain, which is involved in interactions with HscA, connected by a short loop to the C-terminal oligomerisation domain; the two domains make contact through a hydrophobic interface. The core of the oligomerisation domain is thought to bind and target proteins to HscA and consists of an open, three-helical bundle []. HscB, along with HscA, has been shown to play a role in the biogenesis of iron-sulphur proteins.; GO: 0006457 protein folding; PDB: 1FPO_C 3BVO_B 3HHO_A 3UO2_B 3UO3_B.
Probab=47.60 E-value=1.4e+02 Score=23.46 Aligned_cols=60 Identities=32% Similarity=0.394 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHH----HHHHHHHHHhhhhhhhHHHHhhhhHHHHHH
Q 015956 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQ----EDLAQAHRQVHISEARVATALDKLAYMEAL 161 (397)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq----~~~~~ah~~~h~~~~Rv~~ald~~~~~~~~ 161 (397)
-+|++|+.+.++-+. ++...+..|++++.... .++..+=..-. -......+.+++++.++
T Consensus 9 e~mE~rE~le~~~~~--~~~~~L~~l~~~~~~~~~~~~~~l~~~f~~~d--~~~A~~~~~kLky~~kl 72 (78)
T PF07743_consen 9 EQMELREELEEAQNS--DDEAELEELKKEIEERIKELIKELAEAFDAKD--WEEAKEALRKLKYLQKL 72 (78)
T ss_dssp HHHHHHHHHHHHCCC--TSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCc--HHHHHHHHHHHHHHHHH
Confidence 799999999998654 22244555555444433 33333331111 11233555666665543
No 80
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=47.49 E-value=94 Score=27.23 Aligned_cols=26 Identities=35% Similarity=0.440 Sum_probs=22.1
Q ss_pred CceeehhhHHHHhhhcccccccccch
Q 015956 69 GKFLDVNQALEVARYDIQYCDWRARQ 94 (397)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (397)
+.-+|+.++++-+.|||+.+|=+-++
T Consensus 26 ~~~ld~~~~l~kL~~~i~eld~~i~~ 51 (132)
T PF10392_consen 26 DSELDISTPLKKLNFDIQELDKRIRS 51 (132)
T ss_pred CCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 45689999999999999999976554
No 81
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=46.35 E-value=24 Score=30.08 Aligned_cols=47 Identities=21% Similarity=0.360 Sum_probs=37.9
Q ss_pred cchhhH--HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHh
Q 015956 92 ARQDVL--TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQV 141 (397)
Q Consensus 92 ~~~d~~--~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~ 141 (397)
-|.|+. .+.|++-.+ -+|.-.=+.-|.+|+.||..+|.||..++.|+
T Consensus 53 ~R~~a~~Sl~yEA~~R~---~dPv~Gc~G~i~~L~~ql~~~~~el~~~~~~l 101 (101)
T PF03195_consen 53 QREDAMRSLVYEANARA---RDPVYGCVGIISQLQQQLQQLQAELALVRAQL 101 (101)
T ss_pred chhhHHHHHHHHHHhhc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 377777 555776554 57888888889999999999999999998774
No 82
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=44.27 E-value=61 Score=31.23 Aligned_cols=50 Identities=26% Similarity=0.440 Sum_probs=37.4
Q ss_pred hhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHH
Q 015956 109 VLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (397)
Q Consensus 109 ~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~~ 159 (397)
.||.+-. |.+|..||++...+..++..|+..+.....--.+|..+.+.-.
T Consensus 24 ~lNd~TG-Ys~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~~ai~~Rs~sQ 73 (207)
T PF05546_consen 24 ALNDVTG-YSEIEKLKKSIEELEDELEAARQEVREAKAAYDDAIQQRSSSQ 73 (207)
T ss_pred HHHhccC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666 8899999999999988888888877766666666666665443
No 83
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=43.49 E-value=1.3e+02 Score=29.00 Aligned_cols=43 Identities=21% Similarity=0.389 Sum_probs=23.2
Q ss_pred hccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 116 DYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 116 ~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
....+..++.++..+++.+.+-..++.....++.+.-.++...
T Consensus 54 ~~~~~~~~~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~ 96 (302)
T PF10186_consen 54 QLLEIQQLKREIEELRERLERLRERIERLRKRIEQKRERLEEL 96 (302)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555555555555555444444443
No 84
>PF07028 DUF1319: Protein of unknown function (DUF1319); InterPro: IPR010746 This entry is represented by Commelina yellow mottle virus, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains a number of viral proteins of unknown function approximately 200 residues long. Family members seem to be restricted to badnaviruses.
Probab=42.67 E-value=36 Score=30.31 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=15.3
Q ss_pred hcccccccc-----cchhhH---HH----HHHHHHH
Q 015956 83 YDIQYCDWR-----ARQDVL---TI----MLLHEKV 106 (397)
Q Consensus 83 ~~~~~~~~~-----~~~d~~---~~----~~~~~~v 106 (397)
-|..|+||- +.-|+. .| ..+|.||
T Consensus 4 ~dLeYLdLa~~~K~s~~dLahNL~v~~~R~dL~~KV 39 (126)
T PF07028_consen 4 ADLEYLDLATEEKVSNSDLAHNLRVTCYRSDLGSKV 39 (126)
T ss_pred CCchhhhcccccCCcHHHHHhhhhhhhhHhhHHHHH
Confidence 388899983 345555 22 2678888
No 85
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=42.40 E-value=1.2e+02 Score=30.42 Aligned_cols=40 Identities=30% Similarity=0.458 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~~ 159 (397)
+...+++|..++++|.++...+-....|+...-+||+.++
T Consensus 202 l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~ 241 (269)
T PF05278_consen 202 LELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELE 241 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677899999999999999999999999999999998885
No 86
>PRK14147 heat shock protein GrpE; Provisional
Probab=42.39 E-value=80 Score=29.35 Aligned_cols=39 Identities=13% Similarity=0.313 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..|++|+++|++.+.++......-.+|.+........+
T Consensus 27 l~~l~~e~~elkd~~lR~~Ad~eN~rkR~~kE~e~~~~~ 65 (172)
T PRK14147 27 VESLRSEIALVKADALRERADLENQRKRIARDVEQARKF 65 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999988888877
No 87
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=41.40 E-value=16 Score=24.99 Aligned_cols=29 Identities=17% Similarity=0.470 Sum_probs=19.7
Q ss_pred cCCCCCCCCC--CCcc--cceeEEccccCeEEc
Q 015956 258 TCAHRACPLH--LGSV--NEGRIQCPYHGWEYS 286 (397)
Q Consensus 258 ~CPHRGa~Ls--~G~v--~~~~L~CPyHGW~Fd 286 (397)
.|||.|.... ...+ .+..++||..|..|.
T Consensus 4 ~CP~C~~~~~v~~~~~~~~~~~v~C~~C~~~~~ 36 (38)
T TIGR02098 4 QCPNCKTSFRVVDSQLGANGGKVRCGKCGHVWY 36 (38)
T ss_pred ECCCCCCEEEeCHHHcCCCCCEEECCCCCCEEE
Confidence 6999997543 2222 234799999998875
No 88
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=41.15 E-value=1.1e+02 Score=24.28 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=23.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhh
Q 015956 118 KSIGTMKKELAELQEDLAQAHRQVHISE 145 (397)
Q Consensus 118 ~~~~~~~~~l~~lq~~~~~ah~~~h~~~ 145 (397)
+|...|+++|.+|++||..-.-|-....
T Consensus 12 ls~~eL~~~l~elk~eLf~LR~q~~~~~ 39 (69)
T PRK14549 12 MSPEEREEKLEELKLELLKERAQAAMGG 39 (69)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 6789999999999999999887666654
No 89
>PRK04654 sec-independent translocase; Provisional
Probab=41.01 E-value=1.1e+02 Score=29.74 Aligned_cols=57 Identities=19% Similarity=0.266 Sum_probs=40.6
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhH
Q 015956 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLA 156 (397)
Q Consensus 99 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~ 156 (397)
|-.+-+-+-.+.+.+.||.+ ...||++|..+++++..+..++..+...+.++=+.+.
T Consensus 36 irk~R~~~~~vk~El~~El~-~~ELrk~l~~~~~~i~~~~~~lk~~~~el~q~a~~~~ 92 (214)
T PRK04654 36 VRRARMQWDSVKQELERELE-AEELKRSLQDVQASLREAEDQLRNTQQQVEQGARALH 92 (214)
T ss_pred HHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33555566777778888877 5678888888888888877777777777775555444
No 90
>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.85 E-value=16 Score=28.62 Aligned_cols=17 Identities=35% Similarity=0.898 Sum_probs=14.6
Q ss_pred cceeEEccccCeEEcCC
Q 015956 272 NEGRIQCPYHGWEYSTD 288 (397)
Q Consensus 272 ~~~~L~CPyHGW~Fd~d 288 (397)
..+.+.|||+|-.|.++
T Consensus 45 ~~gev~CPYC~t~y~l~ 61 (62)
T COG4391 45 DEGEVVCPYCSTRYRLN 61 (62)
T ss_pred CCCcEecCccccEEEec
Confidence 46899999999999864
No 91
>PRK14157 heat shock protein GrpE; Provisional
Probab=40.74 E-value=82 Score=30.75 Aligned_cols=39 Identities=26% Similarity=0.295 Sum_probs=35.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..|++|++++++.|.++........+|.+....+.+.+
T Consensus 86 l~~le~e~~e~kd~llR~~AEfeNyRKR~~rE~e~~~~~ 124 (227)
T PRK14157 86 LGQAKKEAAEYLEALQRERAEFINYRNRTQKEQDRFRQH 124 (227)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999888887
No 92
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=40.19 E-value=77 Score=34.82 Aligned_cols=58 Identities=22% Similarity=0.349 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Q 015956 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 155 (397)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~ 155 (397)
.+.+.++|+.+-|+-|-----+.+.|+++++.++++|.+|=.++|..+......|.+.
T Consensus 322 ~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~~~~~A~~Ls~~R~~~A~~L~~~ 379 (557)
T COG0497 322 DLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAELLEAAEALSAIRKKAAKELEKE 379 (557)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888888777777999999999999999999999999999999888773
No 93
>PRK14141 heat shock protein GrpE; Provisional
Probab=40.12 E-value=85 Score=30.22 Aligned_cols=39 Identities=15% Similarity=0.205 Sum_probs=32.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..|++|+++|++.|.++......-.+|........+.+
T Consensus 40 i~~le~e~~elkd~~lR~~Ae~eN~RKR~~kE~e~~~~~ 78 (209)
T PRK14141 40 LEALKAENAELKDRMLRLAAEMENLRKRTQRDVADARAY 78 (209)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788888888888888888899999999888888877
No 94
>PRK14164 heat shock protein GrpE; Provisional
Probab=39.89 E-value=87 Score=30.36 Aligned_cols=42 Identities=19% Similarity=0.157 Sum_probs=37.8
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 117 YKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 117 ~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
..-+..|++||++|++.|.++........+|..........+
T Consensus 76 ~~~~~~le~el~el~d~llR~~AE~eN~RkR~~rE~e~~~~~ 117 (218)
T PRK14164 76 DGEASTVEAQLAERTEDLQRVTAEYANYRRRTERERQAIIET 117 (218)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345888999999999999999999999999999888888877
No 95
>smart00661 RPOL9 RNA polymerase subunit 9.
Probab=39.75 E-value=36 Score=24.50 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=25.1
Q ss_pred cCCCCCCCCCCCcccc-eeEEccccCeEEcCCCcc
Q 015956 258 TCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKC 291 (397)
Q Consensus 258 ~CPHRGa~Ls~G~v~~-~~L~CPyHGW~Fd~dG~~ 291 (397)
.||..|..|..-...+ ..++||-.|..+..+-++
T Consensus 2 FCp~Cg~~l~~~~~~~~~~~vC~~Cg~~~~~~~~~ 36 (52)
T smart00661 2 FCPKCGNMLIPKEGKEKRRFVCRKCGYEEPIEQKY 36 (52)
T ss_pred CCCCCCCccccccCCCCCEEECCcCCCeEECCCcE
Confidence 6999998886543333 489999999888876553
No 96
>PRK09039 hypothetical protein; Validated
Probab=39.62 E-value=1.3e+02 Score=30.82 Aligned_cols=40 Identities=20% Similarity=0.389 Sum_probs=22.9
Q ss_pred hhhHHHHHHHHHHHH-------HHHHHHhhhhhhhHHHHhhh-hHHHH
Q 015956 120 IGTMKKELAELQEDL-------AQAHRQVHISEARVATALDK-LAYME 159 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~-------~~ah~~~h~~~~Rv~~ald~-~~~~~ 159 (397)
|..||+||+.||++| ..++.|+...+.++..+|.+ +.+++
T Consensus 146 I~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~ 193 (343)
T PRK09039 146 IAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELN 193 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444 45566667777777777744 55554
No 97
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=39.20 E-value=1.4e+02 Score=29.00 Aligned_cols=69 Identities=22% Similarity=0.185 Sum_probs=55.7
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHhhhcCC
Q 015956 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQD 169 (397)
Q Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~~~~~r~r~l~~ 169 (397)
.+|+++.+.=+|.--=.-.|..++++|..+...++++..+-+-.++++.+.......|++=.+..+..+
T Consensus 14 ~~~~~~dk~EDp~~~l~Q~ird~~~~l~~ar~~~A~~~a~~k~~e~~~~~~~~~~~k~e~~A~~Al~~g 82 (225)
T COG1842 14 NINELLDKAEDPEKMLEQAIRDMESELAKARQALAQAIARQKQLERKLEEAQARAEKLEEKAELALQAG 82 (225)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 567777777777733333599999999999999999999999999999999999999876555555444
No 98
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.00 E-value=47 Score=25.52 Aligned_cols=34 Identities=38% Similarity=0.435 Sum_probs=23.2
Q ss_pred HhhChhhhhccchhhHHHHHHHHHHHHHHHHHHh
Q 015956 108 EVLNPLARDYKSIGTMKKELAELQEDLAQAHRQV 141 (397)
Q Consensus 108 ~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~ 141 (397)
|.=|.+-+=-.+++|+|+|+.+|.+++.+-.+-+
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555678899999888888876655444
No 99
>PRK11637 AmiB activator; Provisional
Probab=38.76 E-value=1.2e+02 Score=31.58 Aligned_cols=37 Identities=11% Similarity=0.195 Sum_probs=20.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Q 015956 117 YKSIGTMKKELAELQEDLAQAHRQVHISEARVATALD 153 (397)
Q Consensus 117 ~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald 153 (397)
...+.+++++|..+++++.+...++...+.++...-+
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~ 124 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQER 124 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555555555566666666566655555554433
No 100
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=38.38 E-value=73 Score=31.73 Aligned_cols=53 Identities=17% Similarity=0.293 Sum_probs=36.1
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHH
Q 015956 105 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (397)
Q Consensus 105 ~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~ 157 (397)
...+..+-....++...+|++|-+.|.+|+++...+.......++....+|+.
T Consensus 53 ~p~~~~~~~~~~~~~~~~l~~EN~~Lr~e~~~l~~~~~~~~~~l~~EN~rLr~ 105 (283)
T TIGR00219 53 RPREVFDGISENLKDVNNLEYENYKLRQELLKKNQQLEILTQNLKQENVRLRE 105 (283)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777777888888888888888887755555444445566666555
No 101
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=37.34 E-value=72 Score=25.73 Aligned_cols=28 Identities=32% Similarity=0.436 Sum_probs=22.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 015956 121 GTMKKELAELQEDLAQAHRQVHISEARVA 149 (397)
Q Consensus 121 ~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~ 149 (397)
=+||++|...+.||+.|=|| |+---||-
T Consensus 25 f~LRk~l~~~rqELs~aLYq-~DAA~RVi 52 (70)
T PF08606_consen 25 FTLRKQLDQTRQELSHALYQ-HDAACRVI 52 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhHHHHHH
Confidence 37999999999999999998 55555554
No 102
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=36.98 E-value=1.7e+02 Score=26.19 Aligned_cols=44 Identities=7% Similarity=0.067 Sum_probs=30.2
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 115 RDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 115 ~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
-+.+++..|++|+...+..|.+-..++...+..+..+-..++..
T Consensus 38 ~~~~~l~lLq~e~~~~e~~le~d~~~L~~Le~~~~~~~~e~~~~ 81 (160)
T PF13094_consen 38 ANLHQLELLQEEIEKEEAALERDYEYLQELEKNAKALEREREEE 81 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777777777777777776655555543
No 103
>PRK14139 heat shock protein GrpE; Provisional
Probab=36.86 E-value=1.1e+02 Score=28.95 Aligned_cols=39 Identities=18% Similarity=0.245 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..|++++++|++.|.++........+|.+...+....|
T Consensus 41 l~~le~e~~elkd~~lR~~AefeN~rKR~~kE~e~~~~~ 79 (185)
T PRK14139 41 LAEAEAKAAELQDSFLRAKAETENVRRRAQEDVAKAHKF 79 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567999999999999999999999999999999888887
No 104
>PRK05580 primosome assembly protein PriA; Validated
Probab=36.76 E-value=28 Score=38.76 Aligned_cols=30 Identities=23% Similarity=0.500 Sum_probs=23.1
Q ss_pred ecCCCCCCCCCCCcccceeEEccccCeEEcC
Q 015956 257 NTCAHRACPLHLGSVNEGRIQCPYHGWEYST 287 (397)
Q Consensus 257 N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~ 287 (397)
-.|||++.+|..-. ..+.+.|.|+|++...
T Consensus 391 ~~C~~C~~~l~~h~-~~~~l~Ch~Cg~~~~~ 420 (679)
T PRK05580 391 AECPHCDASLTLHR-FQRRLRCHHCGYQEPI 420 (679)
T ss_pred cCCCCCCCceeEEC-CCCeEECCCCcCCCCC
Confidence 35888888887543 3578999999998774
No 105
>PRK14151 heat shock protein GrpE; Provisional
Probab=36.67 E-value=1.1e+02 Score=28.56 Aligned_cols=39 Identities=13% Similarity=0.241 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..|++++++|++.+.++........+|.+........+
T Consensus 29 i~~le~e~~el~d~~lR~~Ae~eN~rkR~~kE~e~~~~~ 67 (176)
T PRK14151 29 VQELEEQLAAAKDQSLRAAADLQNVRRRAEQDVEKAHKF 67 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999888887776
No 106
>PRK09039 hypothetical protein; Validated
Probab=36.52 E-value=1.3e+02 Score=30.70 Aligned_cols=59 Identities=20% Similarity=0.245 Sum_probs=46.2
Q ss_pred HHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHH
Q 015956 102 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEA 160 (397)
Q Consensus 102 ~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~~~ 160 (397)
+-++..+.....+..+.-|..|+.|++.|.+++++....+..+|.|-+..=.++..++.
T Consensus 121 l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~ 179 (343)
T PRK09039 121 LAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGR 179 (343)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555556666666688899999999999999999999999999888778777754
No 107
>PF15155 MRFAP1: MORF4 family-associated protein1
Probab=36.11 E-value=70 Score=28.00 Aligned_cols=47 Identities=28% Similarity=0.317 Sum_probs=34.7
Q ss_pred HHHHhhChhh----hhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHH
Q 015956 105 KVVEVLNPLA----RDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEAL 161 (397)
Q Consensus 105 ~v~~~l~~~~----~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~~~~ 161 (397)
.=||||.|.- ==.-.|..+|+++|.|.+|-.+||-+ +-+||-.|+.+
T Consensus 13 eevevlepeedfeqfllPvi~e~RediAsL~Re~~RA~lR----------~R~KL~Emdnm 63 (127)
T PF15155_consen 13 EEVEVLEPEEDFEQFLLPVIHEMREDIASLTREHGRAYLR----------NRSKLWEMDNM 63 (127)
T ss_pred hhhcccCchhhhhhhccchHHHHHHHHHHHHHHHhHHHHH----------hHHHHHHHHHH
Confidence 4578888865 12346889999999999999999874 45677777654
No 108
>PRK14155 heat shock protein GrpE; Provisional
Probab=35.51 E-value=1.1e+02 Score=29.34 Aligned_cols=39 Identities=15% Similarity=0.251 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..|++|+++|++.+.+++.....-.+|.+........+
T Consensus 22 l~~le~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~ 60 (208)
T PRK14155 22 IEALKAEVAALKDQALRYAAEAENTKRRAEREMNDARAY 60 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999888877
No 109
>PF07730 HisKA_3: Histidine kinase; InterPro: IPR011712 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Signal transducing histidine kinases are the key elements in two-component signal transduction systems, which control complex processes such as the initiation of development in microorganisms [, ]. Examples of histidine kinases are EnvZ, which plays a central role in osmoregulation [], and CheA, which plays a central role in the chemotaxis system []. Histidine kinases usually have an N-terminal ligand-binding domain and a C-terminal kinase domain, but other domains may also be present. The kinase domain is responsible for the autophosphorylation of the histidine with ATP, the phosphotransfer from the kinase to an aspartate of the response regulator, and (with bifunctional enzymes) the phosphotransfer from aspartyl phosphate back to ADP or to water []. The kinase core has a unique fold, distinct from that of the Ser/Thr/Tyr kinase superfamily. HKs can be roughly divided into two classes: orthodox and hybrid kinases [, ]. Most orthodox HKs, typified by the Escherichia coli EnvZ protein, function as periplasmic membrane receptors and have a signal peptide and transmembrane segment(s) that separate the protein into a periplasmic N-terminal sensing domain and a highly conserved cytoplasmic C-terminal kinase core. Members of this family, however, have an integral membrane sensor domain. Not all orthodox kinases are membrane bound, e.g., the nitrogen regulatory kinase NtrB (GlnL) is a soluble cytoplasmic HK []. Hybrid kinases contain multiple phosphodonor and phosphoacceptor sites and use multi-step phospho-relay schemes instead of promoting a single phosphoryl transfer. In addition to the sensor domain and kinase core, they contain a CheY-like receiver domain and a His-containing phosphotransfer (HPt) domain. This entry represetns the dimerisation and phosphoacceptor domain of a sub-family of histidine kinases. It shares sequence similarity with IPR003661 from INTERPRO and IPR011102 from INTERPRO.; GO: 0000155 two-component sensor activity, 0046983 protein dimerization activity, 0000160 two-component signal transduction system (phosphorelay), 0016021 integral to membrane; PDB: 3GIE_B 3GIG_A 3EHJ_B 3EHH_B 3GIF_B 3EHF_B 3EHG_A.
Probab=35.22 E-value=73 Score=23.77 Aligned_cols=57 Identities=14% Similarity=0.240 Sum_probs=27.4
Q ss_pred HHHHHHHHhhChhhhhccchhh-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHH
Q 015956 101 LLHEKVVEVLNPLARDYKSIGT-MKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (397)
Q Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~-~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~ 157 (397)
++||-|.-.|.-+.-.-..+.. +++.-..+++++.++...+..+-..+...+..++|
T Consensus 8 eLHD~v~q~L~~i~~~l~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~R~~~~~Lrp 65 (68)
T PF07730_consen 8 ELHDGVGQSLTAIKMQLEALRRRLADDPEEAREELEEIRELLREALQELRRIIHELRP 65 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCH-
T ss_pred HHhhHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788887777665544333321 12222344455555544444444444444444433
No 110
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=34.70 E-value=1.3e+02 Score=22.65 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhh
Q 015956 118 KSIGTMKKELAELQEDLAQAHRQVHISE 145 (397)
Q Consensus 118 ~~~~~~~~~l~~lq~~~~~ah~~~h~~~ 145 (397)
+|...|+++|.+|.+||.+...|-....
T Consensus 6 ls~~eL~~~l~~l~~elf~Lr~q~~~~~ 33 (57)
T cd00427 6 KSDEELQEKLDELKKELFNLRFQKATGQ 33 (57)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 5689999999999999999987766554
No 111
>PRK14163 heat shock protein GrpE; Provisional
Probab=34.48 E-value=1.2e+02 Score=29.42 Aligned_cols=39 Identities=15% Similarity=0.201 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..|++++..|.+.|.+++.......+|..........|
T Consensus 49 l~~l~~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~ 87 (214)
T PRK14163 49 LDQVRTALGERTADLQRLQAEYQNYRRRVERDRVTVKEI 87 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677999999999999999999999999999888888877
No 112
>PF10243 MIP-T3: Microtubule-binding protein MIP-T3; InterPro: IPR018799 This entry represents a protein which interacts with both microtubules and TRAF3 (tumour necrosis factor receptor-associated factor 3), and is conserved from worms to humans. The N-terminal region is the microtubule binding domain and is well-conserved; the C-terminal 100 residues, also well-conserved, constitute the coiled-coil region which binds to TRAF3. The central region of the protein is rich in lysine and glutamic acid and carries KKE motifs which may also be necessary for tubulin-binding, but this region is the least well-conserved []. ; PDB: 2EQO_A.
Probab=33.91 E-value=14 Score=39.98 Aligned_cols=45 Identities=16% Similarity=0.291 Sum_probs=0.0
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHH
Q 015956 113 LARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (397)
Q Consensus 113 ~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~ 157 (397)
...-..++.-|+.||++|++++..-+..+|.+.+.|=.+=.++.-
T Consensus 490 ~~~t~~~~~pl~~~L~ele~~I~~~~~~i~~~ka~Il~Ne~~i~~ 534 (539)
T PF10243_consen 490 QSITDEALEPLKAQLAELEQQIKDQQDKICAVKANILKNEEKIQK 534 (539)
T ss_dssp ---------------------------------------------
T ss_pred HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 333445678899999999999999999999999998877777655
No 113
>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional
Probab=33.77 E-value=27 Score=25.09 Aligned_cols=29 Identities=24% Similarity=0.578 Sum_probs=21.0
Q ss_pred cCCCCCCCCCCCcccceeEEccccCeEEcC
Q 015956 258 TCAHRACPLHLGSVNEGRIQCPYHGWEYST 287 (397)
Q Consensus 258 ~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~ 287 (397)
.|+=.|+.+...... ..++|||.|..+..
T Consensus 5 ~C~~CG~~~~~~~~~-~~~~Cp~CG~~~~~ 33 (46)
T PRK00398 5 KCARCGREVELDEYG-TGVRCPYCGYRILF 33 (46)
T ss_pred ECCCCCCEEEECCCC-CceECCCCCCeEEE
Confidence 578778777654322 27999999988874
No 114
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=33.25 E-value=2.3e+02 Score=24.64 Aligned_cols=37 Identities=19% Similarity=0.254 Sum_probs=31.5
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 122 TMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 122 ~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
.|+..+..||.+-....+++-..++.|++++..+..+
T Consensus 41 ~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~e 77 (107)
T PF09304_consen 41 QLRNALQSLQAQNASRNQRIAELQAKIDEARRNLEDE 77 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667788889999999999999999999998887774
No 115
>PRK14146 heat shock protein GrpE; Provisional
Probab=33.17 E-value=1.3e+02 Score=29.08 Aligned_cols=39 Identities=18% Similarity=0.250 Sum_probs=35.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..|+++++.|++.|.+++.....-.+|..........+
T Consensus 63 l~~l~~e~~el~d~~lR~~AdfeN~rkR~~kE~e~~~~~ 101 (215)
T PRK14146 63 LDNAKKEIESLKDSWARERAEFQNFKRRSAQEFVSIRKE 101 (215)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999999888887
No 116
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=32.60 E-value=21 Score=22.41 Aligned_cols=22 Identities=18% Similarity=0.341 Sum_probs=15.6
Q ss_pred cCCCCCCCCCCCcccceeEEccccCeE
Q 015956 258 TCAHRACPLHLGSVNEGRIQCPYHGWE 284 (397)
Q Consensus 258 ~CPHRGa~Ls~G~v~~~~L~CPyHGW~ 284 (397)
.|||.|..+..+ .-.||+.|..
T Consensus 1 ~Cp~CG~~~~~~-----~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDD-----AKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCc-----CcchhhhCCc
Confidence 499999988743 3448887753
No 117
>PRK14149 heat shock protein GrpE; Provisional
Probab=31.82 E-value=1.5e+02 Score=28.27 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..|++++++|.+.|.++......-.+|..........+
T Consensus 45 ~~~l~~e~~elkd~~lR~~AefEN~rKR~~kE~e~~~~~ 83 (191)
T PRK14149 45 KEDFELKYKEMHEKYLRVHADFENVKKRLERDKSMALEY 83 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999988888877
No 118
>PRK14162 heat shock protein GrpE; Provisional
Probab=31.68 E-value=1.3e+02 Score=28.71 Aligned_cols=40 Identities=15% Similarity=0.259 Sum_probs=35.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 119 ~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
.+..|+++++.|++.|.++......-.+|.+........+
T Consensus 47 ~l~~l~~e~~elkd~~lR~~AEfeN~rkR~~kE~e~~~~~ 86 (194)
T PRK14162 47 EIADLKAKNKDLEDKYLRSQAEIQNMQNRYAKERAQLIKY 86 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999999999999888888777
No 119
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=31.63 E-value=1.5e+02 Score=29.85 Aligned_cols=39 Identities=36% Similarity=0.424 Sum_probs=16.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
|..+|++|++||+|+.+-..++...+.+.+..+..++..
T Consensus 225 i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~ 263 (325)
T PF08317_consen 225 IEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEA 263 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444444443
No 120
>PRK14159 heat shock protein GrpE; Provisional
Probab=31.01 E-value=1.4e+02 Score=27.91 Aligned_cols=41 Identities=12% Similarity=0.145 Sum_probs=37.5
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 118 KSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 118 ~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
..+..|++++++|.+.|.++......-.+|........+.+
T Consensus 30 ~~i~~l~~e~~elkd~~lR~~AdfeN~rkR~~rE~e~~~~~ 70 (176)
T PRK14159 30 VEQNKLQKDYDELKDKYMRANAEFENIKKRMEKEKLSAMAY 70 (176)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44688999999999999999999999999999998888877
No 121
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=30.90 E-value=2.6e+02 Score=27.01 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=18.5
Q ss_pred CCCceeEee--CCeeEEEEEcCCCcEEEEee
Q 015956 229 DDTMVPFDC--FEEPWVIFRGKDGIPGCVQN 257 (397)
Q Consensus 229 ~G~~~~v~i--~G~~IVV~R~~dG~i~A~~N 257 (397)
.|..+.+++ .|.--++|++.||+-..+.|
T Consensus 178 dG~~~~V~~LrlGr~~l~~~t~Dg~~~g~~~ 208 (251)
T PF11932_consen 178 DGEERQVDFLRLGRVALYYQTLDGSQAGVWD 208 (251)
T ss_pred CCeEEEEEEEeecchhheeECCCccceeeec
Confidence 566666665 56666777888886554443
No 122
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=30.68 E-value=2.5e+02 Score=25.85 Aligned_cols=87 Identities=13% Similarity=0.289 Sum_probs=45.3
Q ss_pred ceeehhhHHHHhhhccccccc-------------ccchh---hHHHHHHHHHHHHhhChhhhh-ccchhhHHHHHHHHHH
Q 015956 70 KFLDVNQALEVARYDIQYCDW-------------RARQD---VLTIMLLHEKVVEVLNPLARD-YKSIGTMKKELAELQE 132 (397)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~-------------~~~~d---~~~~~~~~~~v~~~l~~~~~~-~~~~~~~~~~l~~lq~ 132 (397)
++--+|+|.++++.++.-..+ .+..| |..+|++|++++++-+. ++ ...+..|++++...++
T Consensus 50 ~s~~iN~AY~~L~dp~~Ra~Yll~l~g~~~~~~~~~~~d~efLme~me~rE~le~~~~~--~d~~~~l~~l~~~~~~~~~ 127 (171)
T PRK05014 50 QAATINDAYQTLKHPLKRAEYLLSLHGFDLAHEQHTVRDTAFLMEQMELREELEDIEQS--KDPEAALESFIKRVKKMFK 127 (171)
T ss_pred HHHHHHHHHHHHCChhHHHHHHHHhcCCccccccCCcCCHHHHHHHHHHHHHHHhhccc--cCHHHHHHHHHHHHHHHHH
Confidence 566799999998766532111 11112 23789999999877432 11 2224445444444333
Q ss_pred ----HHHHHHHHhhhhhhhHHHHhhhhHHHHH
Q 015956 133 ----DLAQAHRQVHISEARVATALDKLAYMEA 160 (397)
Q Consensus 133 ----~~~~ah~~~h~~~~Rv~~ald~~~~~~~ 160 (397)
++.++=. .++- ......+.|++++.+
T Consensus 128 ~~~~~l~~~~~-~~d~-~~A~~~~~~Lky~~k 157 (171)
T PRK05014 128 TRLQQMVEQLD-NEAW-DAAADTVRKLKFLDK 157 (171)
T ss_pred HHHHHHHHHHh-hCCH-HHHHHHHHHHHHHHH
Confidence 3333321 1222 344456666666654
No 123
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=30.48 E-value=1.1e+02 Score=26.52 Aligned_cols=46 Identities=13% Similarity=0.304 Sum_probs=30.1
Q ss_pred hhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 113 LARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 113 ~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
|......|..|+..|.++++++...+..+......|+..|......
T Consensus 64 L~g~~~~i~~l~~~L~~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l 109 (133)
T PF06148_consen 64 LVGMDEKIEELRKPLSQFREEVESVRDELDNTQEEIEDKLEERKEL 109 (133)
T ss_dssp ----------HHHHHHHHHHHHHHHHHS-STTHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444556778888899999999998888888888888888877765
No 124
>smart00549 TAFH TAF homology. Domain in Drosophila nervy, CBFA2T1, human TAF105, human TAF130, and Drosophila TAF110. Also known as nervy homology region 1 (NHR1).
Probab=30.28 E-value=86 Score=26.53 Aligned_cols=39 Identities=26% Similarity=0.330 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHH
Q 015956 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQA 137 (397)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~a 137 (397)
++++.|.+.-|.||-=.|-+- |+=||+-|--||.++..-
T Consensus 41 ~~EeF~~~Lq~~lns~~qP~l-vPFLK~slp~Lr~~l~~~ 79 (92)
T smart00549 41 TAEEFTSRLQEALNSPLQPYL-IPFLKNSLPLLRRELLHC 79 (92)
T ss_pred CHHHHHHHHHHHHcCCCCchh-HHHHHHhhHHHHHHHHHH
Confidence 789999999999999999988 899999999999988753
No 125
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=30.15 E-value=1.5e+02 Score=23.46 Aligned_cols=49 Identities=18% Similarity=0.266 Sum_probs=28.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHhhhcC
Q 015956 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVNDRLLQ 168 (397)
Q Consensus 119 ~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~~~~~r~r~l~ 168 (397)
.+..+..+++.++.++.+...+.-..+..++ .|+.-...+++.|..|..
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~-~l~~~~rIe~~Ar~~lgM 73 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVA-ELSRHERIEKIAKKQLGM 73 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCHHHHHHHHHHhcCC
Confidence 3456666666666666665555555544444 455555566777777644
No 126
>PRK14154 heat shock protein GrpE; Provisional
Probab=29.89 E-value=1.6e+02 Score=28.37 Aligned_cols=39 Identities=10% Similarity=0.238 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..|++++++|++.|.++......-.+|..........+
T Consensus 61 l~~le~e~~elkd~~lRl~ADfeNyRKR~~kE~e~~~~~ 99 (208)
T PRK14154 61 LTRMERKVDEYKTQYLRAQAEMDNLRKRIEREKADIIKF 99 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888888888899999999888887776
No 127
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=29.78 E-value=72 Score=27.49 Aligned_cols=13 Identities=23% Similarity=0.406 Sum_probs=5.5
Q ss_pred HHHhhhccccccc
Q 015956 78 LEVARYDIQYCDW 90 (397)
Q Consensus 78 ~~~~~~~~~~~~~ 90 (397)
+.++-.=|+|+.+
T Consensus 61 frLaQl~ieYLl~ 73 (118)
T PF13815_consen 61 FRLAQLSIEYLLH 73 (118)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 128
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=29.75 E-value=2.5e+02 Score=23.81 Aligned_cols=53 Identities=11% Similarity=0.121 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 015956 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (397)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ 150 (397)
.|.+-..|-+.++.-...|.+..-...++|..|+.++...+....-.+.+|..
T Consensus 54 flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~ 106 (126)
T PF13863_consen 54 FLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEE 106 (126)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45577888889999999999999999999999999999888877777666653
No 129
>PF15616 TerY-C: TerY-C metal binding domain
Probab=29.69 E-value=26 Score=31.34 Aligned_cols=28 Identities=32% Similarity=0.767 Sum_probs=19.8
Q ss_pred ecCCCCCCCCCC-----Ccc----cceeEEccccCeE
Q 015956 257 NTCAHRACPLHL-----GSV----NEGRIQCPYHGWE 284 (397)
Q Consensus 257 N~CPHRGa~Ls~-----G~v----~~~~L~CPyHGW~ 284 (397)
.-|||.|+.... |++ ..+..+||+.|-+
T Consensus 78 PgCP~CGn~~~fa~C~CGkl~Ci~g~~~~~CPwCg~~ 114 (131)
T PF15616_consen 78 PGCPHCGNQYAFAVCGCGKLFCIDGEGEVTCPWCGNE 114 (131)
T ss_pred CCCCCCcChhcEEEecCCCEEEeCCCCCEECCCCCCe
Confidence 789999977432 332 2468999999865
No 130
>PRK14143 heat shock protein GrpE; Provisional
Probab=29.51 E-value=1.6e+02 Score=28.93 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=34.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..|+++++.|++.|.++......-.+|.+......+.+
T Consensus 76 l~~l~~e~~elkd~~lR~~AdfeN~RKR~~kE~e~~~~~ 114 (238)
T PRK14143 76 LESLKQELEELNSQYMRIAADFDNFRKRTSREQEDLRLQ 114 (238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566899999999999999999999999999888887776
No 131
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=29.50 E-value=2.3e+02 Score=26.00 Aligned_cols=86 Identities=17% Similarity=0.231 Sum_probs=46.8
Q ss_pred eeehhhHHHHhhhcc---ccc---------c--cccchh---hHHHHHHHHHHHHhhChhhhhccchhhHHHHHH----H
Q 015956 71 FLDVNQALEVARYDI---QYC---------D--WRARQD---VLTIMLLHEKVVEVLNPLARDYKSIGTMKKELA----E 129 (397)
Q Consensus 71 ~~~~~~~~~~~~~~~---~~~---------~--~~~~~d---~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~----~ 129 (397)
+--+|+|.++++.++ +|+ + -.+..| |..+|++++++.|.-++ ..+..|++++. +
T Consensus 50 s~~in~AY~~L~dp~~Ra~YlL~l~g~~~~~~~~~~~~d~~fLme~me~rE~le~~~~~-----~~L~~l~~~~~~~~~~ 124 (166)
T PRK01356 50 ASELNNAYSTLKDALKRAEYMLLLQNINLNDEKTRSLLSPLELSIFWDEMERIENTILF-----SDLEKIKNKYELMYKN 124 (166)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHccCCCCCCccccccCCHHHHHHHHHHHHHHHcCCCH-----HHHHHHHHHHHHHHHH
Confidence 447888888877544 231 1 224444 33788999988766322 22445544443 4
Q ss_pred HHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHH
Q 015956 130 LQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (397)
Q Consensus 130 lq~~~~~ah~~~h~~~~Rv~~ald~~~~~~~~~r 163 (397)
+.+++.+|=.. .+- ......+.|+++++++..
T Consensus 125 ~~~~l~~~f~~-~d~-~~A~~~~~~L~y~~kl~~ 156 (166)
T PRK01356 125 EIDSLKQAFEE-QNL-SDATIKTSKLKYIGTLLN 156 (166)
T ss_pred HHHHHHHHHhc-CCH-HHHHHHHHHHHHHHHHHH
Confidence 44455544322 221 355567777777765443
No 132
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=29.25 E-value=74 Score=34.63 Aligned_cols=39 Identities=31% Similarity=0.388 Sum_probs=36.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
||-|.-|+.+||-+.+-|.+|+|..|.|=+.+-.+|.++
T Consensus 599 i~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DL 637 (790)
T PF07794_consen 599 IGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDL 637 (790)
T ss_pred hhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999888888887
No 133
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=28.72 E-value=32 Score=37.07 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=11.6
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q 015956 120 IGTMKKELAELQEDLAQAHR 139 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~ 139 (397)
|..|||||++||+|+..-..
T Consensus 33 ie~L~kql~~Lk~q~~~l~~ 52 (489)
T PF11853_consen 33 IEALKKQLEELKAQQDDLND 52 (489)
T ss_pred HHHHHHHHHHHHHhhccccc
Confidence 66666666666666653333
No 134
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=28.66 E-value=28 Score=25.02 Aligned_cols=27 Identities=26% Similarity=0.594 Sum_probs=19.9
Q ss_pred EEeecCCCCCCCCCCCcccceeEEccccC
Q 015956 254 CVQNTCAHRACPLHLGSVNEGRIQCPYHG 282 (397)
Q Consensus 254 A~~N~CPHRGa~Ls~G~v~~~~L~CPyHG 282 (397)
-++..||..|.||...+ ++.+.||-|+
T Consensus 15 ML~~~Cp~C~~PL~~~k--~g~~~Cv~C~ 41 (41)
T PF06677_consen 15 MLDEHCPDCGTPLMRDK--DGKIYCVSCG 41 (41)
T ss_pred HhcCccCCCCCeeEEec--CCCEECCCCC
Confidence 35678999999998732 4578888764
No 135
>PRK14158 heat shock protein GrpE; Provisional
Probab=28.39 E-value=1.8e+02 Score=27.69 Aligned_cols=39 Identities=13% Similarity=0.127 Sum_probs=34.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..|+++++.|++.|.++......-.+|.+...+....|
T Consensus 49 l~~le~e~~el~d~~lR~~AefeN~RkR~~kE~e~~~~~ 87 (194)
T PRK14158 49 LAAKEAEAAANWDKYLRERADLENYRKRVQKEKEELLKY 87 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888899999999999999999999988888887
No 136
>PF15456 Uds1: Up-regulated During Septation
Probab=28.08 E-value=1.4e+02 Score=26.41 Aligned_cols=37 Identities=27% Similarity=0.407 Sum_probs=30.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~ 157 (397)
|..||||+..|+.-+-.+...+- +|+.+.+|..++..
T Consensus 24 Ve~LKkEl~~L~~R~~~lr~kl~-le~k~RdAa~sl~~ 60 (124)
T PF15456_consen 24 VEELKKELRSLDSRLEYLRRKLA-LESKIRDAAHSLSR 60 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 78899999999998888877766 88888888777554
No 137
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription]
Probab=27.60 E-value=1.4e+02 Score=29.24 Aligned_cols=64 Identities=17% Similarity=0.237 Sum_probs=46.9
Q ss_pred hhHHHHhhhcccccccccchhhHHHH-HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHH
Q 015956 75 NQALEVARYDIQYCDWRARQDVLTIM-LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAH 138 (397)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah 138 (397)
..-+|-+|.+|--.+=-+|++.|.|. -+++-+-...-+.+...+.+..|++|=..||++|++..
T Consensus 75 k~~~~~Lk~~vP~~~~~~~~t~lsiL~kA~~~i~~l~~~~~~~~~~~e~l~~e~~~l~~rl~ql~ 139 (232)
T KOG2483|consen 75 KDCFESLKDSVPLLNGETRSTTLSILDKALEHIQSLERKSATQQQDIEDLSRENRKLKARLEQLS 139 (232)
T ss_pred HHHHHHHHHhCCCCCCcchhhhhHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34556677777778888888866555 45555555666778888888899999888888888764
No 138
>COG0675 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=27.38 E-value=39 Score=32.53 Aligned_cols=46 Identities=15% Similarity=0.125 Sum_probs=32.3
Q ss_pred eeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCc
Q 015956 233 VPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 290 (397)
Q Consensus 233 ~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~ 290 (397)
+.-. +|..+.+.+ ..--+-.||.+|. ..++.+.||-+|..+|.|..
T Consensus 292 ka~~-~~~~v~~~~-----~~~tS~~C~~cg~------~~~r~~~C~~cg~~~~rD~n 337 (364)
T COG0675 292 KAEW-GGIVVKVVP-----PYYTSKTCPCCGH------LSGRLFKCPRCGFVHDRDVN 337 (364)
T ss_pred HHHh-CCeEEEECC-----CCCCcccccccCC------ccceeEECCCCCCeehhhHH
Confidence 3334 555555544 3344578999998 34689999999999998764
No 139
>PRK14148 heat shock protein GrpE; Provisional
Probab=27.33 E-value=1.9e+02 Score=27.53 Aligned_cols=39 Identities=8% Similarity=0.190 Sum_probs=35.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..|+++++.|.+.|.++........+|..........+
T Consensus 49 l~~l~~e~~elkd~~lR~~Ae~eN~rKR~~rE~e~~~~~ 87 (195)
T PRK14148 49 IKELEDSCDQFKDEALRAKAEMENIRKRAERDVSNARKF 87 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999999999999999888888776
No 140
>PRK09521 exosome complex RNA-binding protein Csl4; Provisional
Probab=27.18 E-value=1.2e+02 Score=28.01 Aligned_cols=57 Identities=21% Similarity=0.338 Sum_probs=40.5
Q ss_pred CCCCCceeEeeC--CeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEc
Q 015956 227 LKDDTMVPFDCF--EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS 286 (397)
Q Consensus 227 L~~G~~~~v~i~--G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd 286 (397)
+.+||.+...+. +..+.+-. ...++-.+.+.|+-.|.+|.... -+.+.||=.|+.+-
T Consensus 119 ~~~GD~V~akV~~i~~~i~LS~-k~~~lGvv~a~~~~~g~~~~~~~--~~~~~c~~~~~~e~ 177 (189)
T PRK09521 119 FKIGDIVRAKVISYTDPLQLST-KGKDLGVIYAMCSRCRTPLVKKG--ENELKCPNCGNIET 177 (189)
T ss_pred cCCCCEEEEEEEecCCcEEEEE-ecCCceEEEEEccccCCceEECC--CCEEECCCCCCEEe
Confidence 567877666652 24566555 34567788889999999987543 36799999998876
No 141
>PF03245 Phage_lysis: Bacteriophage Rz lysis protein; InterPro: IPR004929 Many bacteriophages with Gram-negative hosts contain two auxiliary lysis genes Rz and Rz1. These genes are nested, with Rz1 occupying the last third of Rz in a +1 reading frame. Both of these genes are required for host cell lysis if the outer membrane is stabilised by millimolar concentrations of divalent cations, but are otherwise uneccessary []. The Rz protein is believed to posses endopeptidase activity, while Rz1 encodes a prolipoprotein which, after cleavage by a signal peptidase, is located in the outer membrane. It has been suggested that these two proteins may form a complex which cleaves the oligopeptide crosslinks between glycosidic strands in the peptidoglycan and the Lpp lipoproteins of the outer bacterial membrane. For more information see []. This entry represents the Rz protein and related sequences. This family is not considered to be a peptidase according to the MEROPs database.; GO: 0019835 cytolysis
Probab=26.37 E-value=1.5e+02 Score=25.91 Aligned_cols=44 Identities=14% Similarity=0.198 Sum_probs=21.3
Q ss_pred hChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhh
Q 015956 110 LNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALD 153 (397)
Q Consensus 110 l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald 153 (397)
|+..-...+......++|+.|+..+.+.-.--.....|+...|.
T Consensus 16 ~~~~~~~i~~~~~~~~~la~ld~k~tkEL~~Ak~e~~~Lr~dl~ 59 (125)
T PF03245_consen 16 LEAANAAIEDMQQRQQALAALDAKYTKELADAKAEIDRLRADLA 59 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33333333334445556666666555544444444444444443
No 142
>COG3027 zapA Cell division protein ZapA (stimulator of FtsZ polymerization and Z-ring component) [Cell cycle control, cell division, chromosome partitioning]
Probab=26.34 E-value=1.2e+02 Score=26.04 Aligned_cols=33 Identities=27% Similarity=0.367 Sum_probs=23.7
Q ss_pred HHHHHHHHHH----HHHHHhhhhhhhHHHHhhhhHHH
Q 015956 126 ELAELQEDLA----QAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 126 ~l~~lq~~~~----~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
||..|++.+. ...++.+..+.++..||+++++.
T Consensus 62 eL~~l~~k~~~~~~~~~q~i~~~~~~~~~Al~~~a~~ 98 (105)
T COG3027 62 ELLKLKEKLRDIEASLEQRIRKLDQALENALTTLAQR 98 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555554 66778888888888899888875
No 143
>PRK14144 heat shock protein GrpE; Provisional
Probab=26.22 E-value=2.1e+02 Score=27.45 Aligned_cols=39 Identities=10% Similarity=0.062 Sum_probs=34.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..|++++++|.+.|.++......-.+|.+......+.+
T Consensus 54 i~~le~e~~elkdk~lR~~AefeN~RKR~~kE~e~~~~~ 92 (199)
T PRK14144 54 LTLAEQKAHENWEKSVRALAELENVRRRMEREVANAHKY 92 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999888888877
No 144
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=25.99 E-value=1.5e+02 Score=26.38 Aligned_cols=40 Identities=25% Similarity=0.308 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~~ 159 (397)
+..+++|+.++++++++-+..+...+..|+.--.|+..+|
T Consensus 84 ~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 84 SKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888888888888888888888887666666554
No 145
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=25.94 E-value=1.6e+02 Score=30.48 Aligned_cols=15 Identities=33% Similarity=0.678 Sum_probs=10.7
Q ss_pred hhhcccccccccchhhH
Q 015956 81 ARYDIQYCDWRARQDVL 97 (397)
Q Consensus 81 ~~~~~~~~~~~~~~d~~ 97 (397)
+|-|- -|||++-|-.
T Consensus 211 ~~~d~--kDWR~hleqm 225 (359)
T PF10498_consen 211 IRADA--KDWRSHLEQM 225 (359)
T ss_pred ccCCc--chHHHHHHHH
Confidence 46664 8999987654
No 146
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.89 E-value=2.2e+02 Score=25.00 Aligned_cols=38 Identities=26% Similarity=0.358 Sum_probs=30.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~ 157 (397)
+..|++||+..|+||.+=.++|..==.+-++-|+.++.
T Consensus 27 q~~l~~eL~~~k~el~~yk~~V~~HF~~ta~Ll~~l~~ 64 (128)
T PF06295_consen 27 QAKLEQELEQAKQELEQYKQEVNDHFAQTAELLDNLTQ 64 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46888888888888888888887766666777777776
No 147
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=25.75 E-value=3.3e+02 Score=25.11 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=39.6
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
..|+..+.+|..- +..|..+++.|+..|..++.++-...+.|+.+..++--|
T Consensus 75 ~~~~~~r~~l~~~------~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~ 126 (158)
T PF09486_consen 75 LALRRYRDVLEER------VRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVC 126 (158)
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 5667777776543 567888888888888888888888888888776665555
No 148
>PRK14160 heat shock protein GrpE; Provisional
Probab=25.68 E-value=2.4e+02 Score=27.27 Aligned_cols=39 Identities=15% Similarity=0.152 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..|+++++.|++.|.++......-.+|..........+
T Consensus 70 l~~l~~e~~elkd~~lR~~AefeN~RKR~~kE~e~~~~~ 108 (211)
T PRK14160 70 NKKLENELEALKDRLLRTVAEYDNYRKRTAKEKEGIYSD 108 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667888888899999999999999999999888887776
No 149
>PRK14140 heat shock protein GrpE; Provisional
Probab=25.53 E-value=2.2e+02 Score=27.04 Aligned_cols=39 Identities=15% Similarity=0.224 Sum_probs=35.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..+++++++|.+.|.++......-.+|.....+....+
T Consensus 46 i~~l~~ei~elkd~~lR~~Ae~eN~rkR~~rE~~~~~~~ 84 (191)
T PRK14140 46 IAELEAKLDELEERYLRLQADFENYKRRIQKENEAAEKY 84 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667999999999999999999999999999888887776
No 150
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=25.47 E-value=68 Score=30.65 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=20.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhh
Q 015956 122 TMKKELAELQEDLAQAHRQVHI 143 (397)
Q Consensus 122 ~~~~~l~~lq~~~~~ah~~~h~ 143 (397)
.||+||++|.++|+++......
T Consensus 100 rLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 100 RLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4999999999999999998876
No 151
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=25.46 E-value=56 Score=30.19 Aligned_cols=21 Identities=14% Similarity=0.526 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 015956 121 GTMKKELAELQEDLAQAHRQV 141 (397)
Q Consensus 121 ~~~~~~l~~lq~~~~~ah~~~ 141 (397)
..+++|++.|.+||.++...+
T Consensus 157 ~~~~~ei~~lk~el~~~~~~~ 177 (192)
T PF05529_consen 157 KKLSEEIEKLKKELEKKEKEI 177 (192)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
Confidence 445666666666666644443
No 152
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=25.35 E-value=3.7e+02 Score=25.72 Aligned_cols=44 Identities=27% Similarity=0.363 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHh
Q 015956 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQV 141 (397)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~ 141 (397)
.+..+.+++...-..+.+-.+.+...|++++++++++......+
T Consensus 64 ~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l 107 (302)
T PF10186_consen 64 EIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRL 107 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444455555555555555555444443
No 153
>PF07531 TAFH: NHR1 homology to TAF; InterPro: IPR003894 The TAF homology (TAFH) or Nervy homology region 1 (NHR1) domain is a domain of 95-100 amino acids present in eukaryotic proteins of the MTG/ETO family and whereof the core ~75-80 residues occur in TAF proteins. The transcription initiation TFIID complex is composed of TATA binding protein (TBP) and a number of TBP-associated factors (TAFs). The TAFH/NHR1 domain is named after fruit fly TATA-box-associated factor 110 (TAF110), human TAF105 and TAF130, and the fruit fly protein Nervy, which is a homologue of human MTG8/ETO [, ]. The human eight twenty-one (ETO or MTG8) and related myeloid transforming gene products MTGR1 and MTG16 as well as the Nervy protein contain the NHR1-4 domains. The NHR1/TAFH domain occurs in the N-terminal part of these proteins, while a MYND-type zinc finger forms the NHR4 domain []. The TAFH/NHR1 domain can be involved in protein-protein interactions, e.g in MTG8/ETO with HSP90 and Gfi-1 []. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2P6V_A 2KNH_A 2PP4_A 2H7B_A.
Probab=25.02 E-value=1e+02 Score=26.21 Aligned_cols=41 Identities=27% Similarity=0.380 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHH
Q 015956 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHR 139 (397)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~ 139 (397)
++++.|.|+-+.||--.|-+- |.=||+-|--||.++.....
T Consensus 42 ~~EeF~~~Lq~~lns~pqP~l-vPFLK~~lp~Lr~~l~~~~~ 82 (96)
T PF07531_consen 42 EAEEFTSKLQEELNSSPQPYL-VPFLKKSLPALRQELPNCAR 82 (96)
T ss_dssp -HHHHHHHHHHHCTSS--TTH-HHHHHHHHHHHHHCHCHHHH
T ss_pred CHHHHHHHHHHHhcCCCCcch-HHHHHHhHHHHHHHHHHHHH
Confidence 889999999999999999888 89999999999999876543
No 154
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=24.83 E-value=1.6e+02 Score=31.66 Aligned_cols=65 Identities=23% Similarity=0.389 Sum_probs=52.3
Q ss_pred hHHHHhhhcccccccccc-hhhH---HHH----------HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 015956 76 QALEVARYDIQYCDWRAR-QDVL---TIM----------LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQ 140 (397)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~-~d~~---~~~----------~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~ 140 (397)
.||+|+=|.--|.+=-.+ .|.+ .|. .-|.+--|-+|.++.+-.+..++...|..||++|-+|+..
T Consensus 196 kalDvVLFGpp~~~~~n~~KD~iLv~lili~v~gcw~ay~Qnk~akehv~km~kdle~Lq~aEqsl~dlQk~Lekar~e 274 (575)
T KOG4403|consen 196 KALDVVLFGPPYKTNHNWTKDFILVVLILIGVGGCWFAYRQNKKAKEHVNKMMKDLEGLQRAEQSLEDLQKRLEKAREE 274 (575)
T ss_pred hhcceEEecCCcCCCcchhhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 378889898888775555 6655 121 3477888889999999999999999999999999999876
No 155
>PF11572 DUF3234: Protein of unknown function (DUF3234); InterPro: IPR021628 This bacterial family of proteins has no known function. Some members in this family of proteins are annotated as TTHA0547 however this cannot be confirmed. ; PDB: 2Z0R_J.
Probab=24.73 E-value=18 Score=30.67 Aligned_cols=53 Identities=4% Similarity=0.079 Sum_probs=39.0
Q ss_pred chhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCC
Q 015956 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLH 267 (397)
Q Consensus 211 ~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls 267 (397)
.+.++..||.+-. ++|+-..++..|+.+..+-.....-.+|...-|++|..++
T Consensus 2 ~~dl~g~WYVLe~----~pGEHLvlealgqrls~iWtS~~~A~~F~~~~p~~GM~V~ 54 (103)
T PF11572_consen 2 APDLSGTWYVLED----EPGEHLVLEALGQRLSGIWTSRELAQAFLARHPELGMRVS 54 (103)
T ss_dssp ---TSSSEEEEES----STT-BEEEEETTEEEEEEBSSHHHHHHHHHTSTSS--EEE
T ss_pred CCCcccceEEecC----CCCceeeHHHHhhhHHhheecHHHHHHHHHhCcccCcEee
Confidence 3456778999866 5899999999999998887777777888889898887644
No 156
>PRK11637 AmiB activator; Provisional
Probab=24.67 E-value=2.1e+02 Score=29.78 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=20.7
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 015956 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARV 148 (397)
Q Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv 148 (397)
.+.+++.+.-..+..-..-+..++++++.|++++.++..++...+..+
T Consensus 79 ~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l 126 (428)
T PRK11637 79 KQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLL 126 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333344555555555555555554444443333
No 157
>PRK14145 heat shock protein GrpE; Provisional
Probab=24.42 E-value=2.3e+02 Score=26.99 Aligned_cols=39 Identities=8% Similarity=0.035 Sum_probs=35.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..+++++++|.+.+.++......-.+|.+...+....+
T Consensus 54 l~~le~e~~el~d~~lR~~AEfeN~rkR~~kE~e~~~~~ 92 (196)
T PRK14145 54 LQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEKSEMVEY 92 (196)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999988888887
No 158
>PRK00464 nrdR transcriptional regulator NrdR; Validated
Probab=24.42 E-value=55 Score=29.97 Aligned_cols=30 Identities=23% Similarity=0.390 Sum_probs=20.7
Q ss_pred cCCCCCCCC---------CCCcccceeEEccccCeEEcC
Q 015956 258 TCAHRACPL---------HLGSVNEGRIQCPYHGWEYST 287 (397)
Q Consensus 258 ~CPHRGa~L---------s~G~v~~~~L~CPyHGW~Fd~ 287 (397)
.|||+|.+- +.|......-.||-+|.+|..
T Consensus 2 ~cp~c~~~~~~~~~s~~~~~~~~~~~~~~c~~c~~~f~~ 40 (154)
T PRK00464 2 RCPFCGHPDTRVIDSRPAEDGNAIRRRRECLACGKRFTT 40 (154)
T ss_pred cCCCCCCCCCEeEeccccCCCCceeeeeeccccCCcceE
Confidence 599999653 234333345779999999984
No 159
>PRK10884 SH3 domain-containing protein; Provisional
Probab=24.28 E-value=1.5e+02 Score=28.39 Aligned_cols=38 Identities=8% Similarity=0.175 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~ 157 (397)
+..|++||+.|+++|+.++++.-...+.+++.++....
T Consensus 95 lp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~ 132 (206)
T PRK10884 95 VPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDS 132 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
No 160
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=24.20 E-value=2.6e+02 Score=23.78 Aligned_cols=51 Identities=18% Similarity=0.305 Sum_probs=32.5
Q ss_pred chhhHHHHHHHHHHHHhhChhhhhccchhh---HHHHHHHHHHHHHHHHHHhhh
Q 015956 93 RQDVLTIMLLHEKVVEVLNPLARDYKSIGT---MKKELAELQEDLAQAHRQVHI 143 (397)
Q Consensus 93 ~~d~~~~~~~~~~v~~~l~~~~~~~~~~~~---~~~~l~~lq~~~~~ah~~~h~ 143 (397)
+.+-+.+...+...+.-+-.++++.++-.. ++.+|..++.+|.+...++-+
T Consensus 23 ~~~~l~l~~~n~el~~el~~l~~~~~~~~~~~~~~~~l~~~~~~lk~~r~~~~v 76 (106)
T PF05837_consen 23 EKKRLRLKRRNQELAQELLELAEKQKSQREDEELSEKLEKLEKELKKSRQRWRV 76 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666777777776655 666777777776666665543
No 161
>COG4420 Predicted membrane protein [Function unknown]
Probab=24.20 E-value=77 Score=30.18 Aligned_cols=42 Identities=33% Similarity=0.462 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhh
Q 015956 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEA 146 (397)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~ 146 (397)
-+|-+|+|+-|. +.+.|-++.||+.|++.+.+++.++-+.+.
T Consensus 135 e~~~l~~kLd~l-------r~~lg~~~~~l~~lre~l~~i~~~~~~~~~ 176 (191)
T COG4420 135 EVAALHEKLDEL-------RLDLGYVRDELDDLRELLAEIEPELADEEA 176 (191)
T ss_pred HHHHHHHHHHHH-------HHhcchhhhchHHHHHHHHHhCcccccHHH
Confidence 456778887665 345678999999999999999988877643
No 162
>PRK06342 transcription elongation factor regulatory protein; Validated
Probab=23.80 E-value=1.4e+02 Score=27.44 Aligned_cols=40 Identities=20% Similarity=0.329 Sum_probs=28.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHh--hhhHHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATAL--DKLAYME 159 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~al--d~~~~~~ 159 (397)
...|++||+.|+++++.|..+=-.||+|=++++ .|+++++
T Consensus 36 ~~~L~~El~~L~~~i~~Ar~~GDlsEak~~~~~~e~rI~~L~ 77 (160)
T PRK06342 36 LKALEDQLAQARAAYEAAQAIEDVNERRRQMARPLRDLRYLA 77 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHH
Confidence 356899999999999999888888885544332 3455544
No 163
>PRK14873 primosome assembly protein PriA; Provisional
Probab=23.74 E-value=37 Score=37.97 Aligned_cols=44 Identities=25% Similarity=0.429 Sum_probs=29.5
Q ss_pred eEEEEEcCCCcEEE-------EeecCCCCCCCCCCCcccceeEEccccCeEE
Q 015956 241 PWVIFRGKDGIPGC-------VQNTCAHRACPLHLGSVNEGRIQCPYHGWEY 285 (397)
Q Consensus 241 ~IVV~R~~dG~i~A-------~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~F 285 (397)
+++|+=+..|=... ....|||++.+|..-. ..+.+.|.|+|+..
T Consensus 370 qvll~lnRrGyap~l~C~~Cg~~~~C~~C~~~L~~h~-~~~~l~Ch~CG~~~ 420 (665)
T PRK14873 370 PVLVQVPRRGYVPSLACARCRTPARCRHCTGPLGLPS-AGGTPRCRWCGRAA 420 (665)
T ss_pred cEEEEecCCCCCCeeEhhhCcCeeECCCCCCceeEec-CCCeeECCCCcCCC
Confidence 66666445552222 3467999999988633 34689999999864
No 164
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=23.69 E-value=4.7e+02 Score=23.07 Aligned_cols=56 Identities=14% Similarity=0.211 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Q 015956 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDK 154 (397)
Q Consensus 99 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~ 154 (397)
+..+.+++..+-+-+..-.+.+.++...+..+.+|+++....+....+.-++.+-|
T Consensus 82 ~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rk 137 (151)
T PF11559_consen 82 LEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQQRKTQYEHELRK 137 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444455555555566666666555555554444444443
No 165
>PRK09634 nusB transcription antitermination protein NusB; Provisional
Probab=23.51 E-value=1.1e+02 Score=29.34 Aligned_cols=37 Identities=19% Similarity=0.291 Sum_probs=31.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 121 ~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
.+.++.|..-..||.+||+++.+||.+- ..+.+++.|
T Consensus 43 ~~~~~~l~~~~~el~~~~~~l~~s~~~~-~~~~~~r~~ 79 (207)
T PRK09634 43 QEVRETLDTAAAELERAQQRLLDSEGDA-SDLESARTM 79 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccc-cchHHHHHH
Confidence 3456778888999999999999999887 678888887
No 166
>PRK14153 heat shock protein GrpE; Provisional
Probab=23.16 E-value=2.5e+02 Score=26.68 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=34.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
|..|++|++.|.+.|.++......-.+|..........|
T Consensus 42 i~~l~~e~~elkd~~lR~~AEfeN~rKR~~kE~e~~~~~ 80 (194)
T PRK14153 42 TEKCREEIESLKEQLFRLAAEFDNFRKRTAREMEENRKF 80 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999999999999999999999888887776
No 167
>PF11464 Rbsn: Rabenosyn Rab binding domain; InterPro: IPR021565 Rabenosyn-5 (Rbsn) is a multivalent effector with interacts with the Rab family.Rsbn contains distinct Rab4 and Rab5 binding sites within residues 264-500 and 627-784 respectively []. Rab proteins are GTPases involved in the regulation of all stages of membrane trafficking []. ; PDB: 1Z0K_B 1YZM_A 1Z0J_B.
Probab=22.99 E-value=82 Score=22.94 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=18.7
Q ss_pred hhhccchhhHHHHHHHHHHHHHH
Q 015956 114 ARDYKSIGTMKKELAELQEDLAQ 136 (397)
Q Consensus 114 ~~~~~~~~~~~~~l~~lq~~~~~ 136 (397)
+|-+-=|.||++-|.+||+|+.+
T Consensus 18 ~~r~dEV~~L~~NL~EL~~e~~~ 40 (42)
T PF11464_consen 18 ARRFDEVATLEENLRELQDEIDE 40 (42)
T ss_dssp TT-HHHHHHHHHHHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHHHHHHHHHHh
Confidence 45566689999999999999975
No 168
>PRK13723 conjugal transfer pilus assembly protein TraH; Provisional
Probab=22.53 E-value=3.1e+02 Score=29.48 Aligned_cols=43 Identities=28% Similarity=0.545 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhHHHH------hhh-hHHHHHHHHhhh
Q 015956 124 KKELAELQEDLAQAHRQVHISEARVATA------LDK-LAYMEALVNDRL 166 (397)
Q Consensus 124 ~~~l~~lq~~~~~ah~~~h~~~~Rv~~a------ld~-~~~~~~~~r~r~ 166 (397)
.+.+..++|+|.+|.+++...+.++.+. +++ ++.||..+..++
T Consensus 390 ~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~i~~~~~~~eqq~~~~~ 439 (451)
T PRK13723 390 EAVMDHLRENLNQAQRQIAAFQSQVQVQQDALLVVDRQMSYMRQQLSARM 439 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556667777777777777766666533 333 444454444443
No 169
>COG5570 Uncharacterized small protein [Function unknown]
Probab=22.51 E-value=1.3e+02 Score=23.03 Aligned_cols=42 Identities=24% Similarity=0.391 Sum_probs=33.4
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhh
Q 015956 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (397)
Q Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h 142 (397)
.+-+++-|.+|.=+-|-..|..||+.-..|.||+.+-..|.|
T Consensus 16 ~le~ei~ea~n~Ps~dd~~i~eLKRrKL~lKeeIEkLka~~~ 57 (57)
T COG5570 16 NLEREIQEAMNSPSSDDLAIRELKRRKLRLKEEIEKLKAQMH 57 (57)
T ss_pred hHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 456778888888888888888898888888888877666654
No 170
>PF01025 GrpE: GrpE; InterPro: IPR000740 Molecular chaperones are a diverse family of proteins that function to protect proteins in the intracellular milieu from irreversible aggregation during synthesis and in times of cellular stress. The bacterial molecular chaperone DnaK is an enzyme that couples cycles of ATP binding, hydrolysis, and ADP release by an N-terminal ATP-hydrolysing domain to cycles of sequestration and release of unfolded proteins by a C-terminal substrate binding domain. In prokaryotes the grpE protein. Dimeric GrpE is the co-chaperone for DnaK, and acts as a nucleotide exchange factor, stimulating the rate of ADP release 5000-fold []. DnaK is itself a weak ATPase; ATP hydrolysis by DnaK is stimulated by its interaction with another co-chaperone, DnaJ. Thus the co-chaperones DnaJ and GrpE are capable of tightly regulating the nucleotide-bound and substrate-bound state of DnaK in ways that are necessary for the normal housekeeping functions and stress-related functions of the DnaK molecular chaperone cycle. The X-ray crystal structure of GrpE in complex with the ATPase domain of DnaK revealed that GrpE is an asymmetric homodimer, bent in a manner that favours extensive contacts with only one DnaKATPase monomer []. GrpE does not actively compete for the atomic positions occupied by the nucleotide. GrpE and ADP mutually reduce one another's affinity for DnaK 200-fold, and ATP instantly dissociates GrpE from DnaK.; GO: 0000774 adenyl-nucleotide exchange factor activity, 0042803 protein homodimerization activity, 0051087 chaperone binding, 0006457 protein folding; PDB: 3A6M_A 4ANI_A 1DKG_B.
Probab=22.25 E-value=1.8e+02 Score=25.93 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=33.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 117 YKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 117 ~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
...+..|++++..|++++.++.........|.....+....+
T Consensus 17 ~~~l~~l~~~~~~l~~~~~r~~ae~en~~~r~~~e~~~~~~~ 58 (165)
T PF01025_consen 17 EEELEELEKEIEELKERLLRLQAEFENYRKRLEKEKEEAKKY 58 (165)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677888999999999988888888888888777666554
No 171
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=21.73 E-value=54 Score=31.72 Aligned_cols=34 Identities=26% Similarity=0.599 Sum_probs=26.1
Q ss_pred cCCCCCCCCCCCcccceeEEccccCeEEcC--CCccccCC
Q 015956 258 TCAHRACPLHLGSVNEGRIQCPYHGWEYST--DGKCEKMP 295 (397)
Q Consensus 258 ~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~--dG~~~~vP 295 (397)
.||.++.+|.. .++.++|+- |.+||. +|-.--.|
T Consensus 4 ~CP~C~~~l~~---~~~~~~C~~-~h~fd~a~~Gy~~ll~ 39 (272)
T PRK11088 4 QCPLCHQPLTL---EENSWICPQ-NHQFDCAKEGYVNLLP 39 (272)
T ss_pred cCCCCCcchhc---CCCEEEcCC-CCCCccccCceEEecc
Confidence 69999999964 346899999 999994 78754444
No 172
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=21.56 E-value=2.4e+02 Score=27.20 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=15.7
Q ss_pred HhhChhhhhccchh---hHHHHHHHHHHHHHHHHHHhhhh
Q 015956 108 EVLNPLARDYKSIG---TMKKELAELQEDLAQAHRQVHIS 144 (397)
Q Consensus 108 ~~l~~~~~~~~~~~---~~~~~l~~lq~~~~~ah~~~h~~ 144 (397)
+-|..+...-+++. .+++||...|.|+.+..-|....
T Consensus 149 ~rl~~ll~ka~~~~d~l~ie~~L~~v~~eIe~~~~~~~~l 188 (262)
T PF14257_consen 149 ERLLELLEKAKTVEDLLEIERELSRVRSEIEQLEGQLKYL 188 (262)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444333344 33444444444444444444333
No 173
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=21.54 E-value=5.3e+02 Score=27.78 Aligned_cols=37 Identities=22% Similarity=0.331 Sum_probs=23.9
Q ss_pred hHHHHHHHHHHHHHHHHHHh-----hhhhhhHHHHhhhhHHH
Q 015956 122 TMKKELAELQEDLAQAHRQV-----HISEARVATALDKLAYM 158 (397)
Q Consensus 122 ~~~~~l~~lq~~~~~ah~~~-----h~~~~Rv~~ald~~~~~ 158 (397)
++|++++.||+-|.+.-.+- |.+|.|-+...|--|+|
T Consensus 289 ~~reen~rlQrkL~~e~erRealcr~lsEsesslemdeery~ 330 (552)
T KOG2129|consen 289 DHREENERLQRKLINELERREALCRMLSESESSLEMDEERYL 330 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 56778888888776654433 66666666666665554
No 174
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=21.53 E-value=42 Score=25.69 Aligned_cols=35 Identities=20% Similarity=0.467 Sum_probs=24.3
Q ss_pred cCCCCCCCCCCCcccceeEEc-----cccCeEEcCCCccccCC
Q 015956 258 TCAHRACPLHLGSVNEGRIQC-----PYHGWEYSTDGKCEKMP 295 (397)
Q Consensus 258 ~CPHRGa~Ls~G~v~~~~L~C-----PyHGW~Fd~dG~~~~vP 295 (397)
.|+=.|-++.. .++.++| |||.|-|+..|.|+..+
T Consensus 7 ~C~~Cg~~~~~---~dDiVvCp~CgapyHR~C~~~~g~C~~~~ 46 (54)
T PF14446_consen 7 KCPVCGKKFKD---GDDIVVCPECGAPYHRDCWEKAGGCINYS 46 (54)
T ss_pred cChhhCCcccC---CCCEEECCCCCCcccHHHHhhCCceEecc
Confidence 45555555532 2467777 59999999999998755
No 175
>TIGR01206 lysW lysine biosynthesis protein LysW. This very small, poorly characterized protein has been shown essential in Thermus thermophilus for an unusual pathway of Lys biosynthesis from aspartate by way of alpha-aminoadipate (AAA) rather than diaminopimelate. It is found also in Deinococcus radiodurans and Pyrococcus horikoshii, which appear to share the AAA pathway.
Probab=21.35 E-value=77 Score=24.14 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=22.9
Q ss_pred ecCCCCCCCCCC-CcccceeEEccccCeEEc
Q 015956 257 NTCAHRACPLHL-GSVNEGRIQCPYHGWEYS 286 (397)
Q Consensus 257 N~CPHRGa~Ls~-G~v~~~~L~CPyHGW~Fd 286 (397)
-.||+.|..+.- +...+..+.||-.|..|-
T Consensus 3 ~~CP~CG~~iev~~~~~GeiV~Cp~CGaele 33 (54)
T TIGR01206 3 FECPDCGAEIELENPELGELVICDECGAELE 33 (54)
T ss_pred cCCCCCCCEEecCCCccCCEEeCCCCCCEEE
Confidence 379999988763 323467889999999887
No 176
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=21.33 E-value=1.3e+02 Score=23.36 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=17.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHH
Q 015956 117 YKSIGTMKKELAELQEDLAQAHRQ 140 (397)
Q Consensus 117 ~~~~~~~~~~l~~lq~~~~~ah~~ 140 (397)
..||..|..-++-|+.|++++...
T Consensus 20 ~lSv~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 20 LLSVEELEERIALLEAEIARLEAA 43 (59)
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHH
Confidence 347888888888888887765543
No 177
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=21.31 E-value=33 Score=30.65 Aligned_cols=29 Identities=21% Similarity=0.436 Sum_probs=17.8
Q ss_pred cCCCCCCCCCCCcc-----cceeEEccccCeEEc
Q 015956 258 TCAHRACPLHLGSV-----NEGRIQCPYHGWEYS 286 (397)
Q Consensus 258 ~CPHRGa~Ls~G~v-----~~~~L~CPyHGW~Fd 286 (397)
.||++|........ ..+.|+||.+|-.--
T Consensus 101 ~Cp~C~~~y~~~ea~~~~d~~~~f~Cp~Cg~~l~ 134 (147)
T smart00531 101 KCPNCQSKYTFLEANQLLDMDGTFTCPRCGEELE 134 (147)
T ss_pred ECcCCCCEeeHHHHHHhcCCCCcEECCCCCCEEE
Confidence 58887755542111 134599998887654
No 178
>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.
Probab=20.98 E-value=1.4e+02 Score=21.46 Aligned_cols=12 Identities=50% Similarity=1.226 Sum_probs=10.6
Q ss_pred eeEEccccCeEE
Q 015956 274 GRIQCPYHGWEY 285 (397)
Q Consensus 274 ~~L~CPyHGW~F 285 (397)
+...|||.|-.|
T Consensus 28 ~~~~CpYCg~~y 39 (40)
T PF10276_consen 28 GPVVCPYCGTRY 39 (40)
T ss_dssp CEEEETTTTEEE
T ss_pred CeEECCCCCCEE
Confidence 579999999988
No 179
>PRK11546 zraP zinc resistance protein; Provisional
Probab=20.83 E-value=2e+02 Score=26.24 Aligned_cols=45 Identities=18% Similarity=0.247 Sum_probs=34.1
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhh
Q 015956 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHI 143 (397)
Q Consensus 99 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~ 143 (397)
|..-+.+.-..|+.-+=|.+.|..|.+|+..|+.+|.+-|.+.++
T Consensus 70 L~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~r~~~~~ 114 (143)
T PRK11546 70 LVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDELRVKRDI 114 (143)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667777778888999999999999999887765443
No 180
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=20.78 E-value=3.8e+02 Score=26.85 Aligned_cols=53 Identities=13% Similarity=0.303 Sum_probs=34.8
Q ss_pred HHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHH
Q 015956 104 EKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (397)
Q Consensus 104 ~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~ 157 (397)
..+-++...+..=.+++..++++-+.|+..+.+-...+--.+.|.+ +|.+|+|
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~-sLq~vRP 221 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQ-SLQSVRP 221 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCh
Confidence 3344445555555666777777777777777777777777777774 5666665
No 181
>KOG1594 consensus Uncharacterized enzymes related to aldose 1-epimerase [Carbohydrate transport and metabolism]
Probab=20.59 E-value=1.3e+02 Score=30.33 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=43.9
Q ss_pred ccccccccccccccceE-EEEEecCCCccccccCceeeeeeecCCCCCCCCcCCceeeh
Q 015956 17 YRPAKINTKKSVRGGFR-VFALFGEEGGLVDKKSAWSTLFDVEDPRSKVPQCKGKFLDV 74 (397)
Q Consensus 17 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (397)
+..+.++-.|-+||||- +|-.||.=|.+-.-.-+....+.||++-+..|.+..-+.|.
T Consensus 60 S~kA~f~ppKpIRGGIP~~FPQFG~~g~l~qHGFaRn~~W~v~~~p~~lp~~~~a~Vdl 118 (305)
T KOG1594|consen 60 STKAIFKPPKPIRGGIPICFPQFGNFGSLPQHGFARNRFWEVENNPPPLPSLGKATVDL 118 (305)
T ss_pred chhhhcCCCCcccCCcceEeeccCCCCcccccccccceeeEeccCCCCCCcCCceeEEE
Confidence 34467888899999996 68999987776665556666778999999999666666653
No 182
>PF14430 Imm1: Immunity protein Imm1
Probab=20.54 E-value=2.2e+02 Score=24.53 Aligned_cols=56 Identities=18% Similarity=0.382 Sum_probs=39.5
Q ss_pred ccccccceEEEEEecCCCccccccCcee---eeeeecCCCCCCCCcCCceeehhhHHHHhh
Q 015956 25 KKSVRGGFRVFALFGEEGGLVDKKSAWS---TLFDVEDPRSKVPQCKGKFLDVNQALEVAR 82 (397)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (397)
--|+.|++.++-.|+++.+.....+.=. ..|++..-..-+|. +..|.+.++...++
T Consensus 52 ~vgv~g~~g~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~e~Pa--~~~vpl~~~~~A~~ 110 (127)
T PF14430_consen 52 GVGVNGDYGVLHYFGDDDGFWSSGDPNPPGDVEYDLNNGGTEFPA--DSEVPLETARQALR 110 (127)
T ss_pred EEEecCCEEEEEEEeCCCCeEecCCCCCCCceeEEecCCCcccCC--CceecHHHHHHHHH
Confidence 3577899999999999766554433322 56666555555765 88899999888876
No 183
>PF15567 Imm19: Immunity protein 19
Probab=20.28 E-value=61 Score=26.91 Aligned_cols=47 Identities=13% Similarity=0.048 Sum_probs=34.7
Q ss_pred hcccceEEeeecCC-CCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCC
Q 015956 213 RLKNFWFPVAFSTD-LKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCA 260 (397)
Q Consensus 213 ~~~~~W~~Va~ssd-L~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CP 260 (397)
.+..+|++-+.+.+ |..|++....+++-+++|=| .+|+++.+.+.+|
T Consensus 30 e~~~GW~f~~~s~~fl~tgd~~~~L~gn~pvvV~~-~~g~~~~~~~~~p 77 (88)
T PF15567_consen 30 EFPYGWVFPYQSVEFLETGDPRDMLAGNAPVVVDK-DGGEIHFLGTAPP 77 (88)
T ss_pred eecceeEEEeehHHHHhcCCHHHhccCCccEEeeC-CCCcEEecCCCCc
Confidence 45678999998888 45688666666666655554 7999998887776
No 184
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=20.14 E-value=3.3e+02 Score=21.25 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 129 ELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 129 ~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
.+|+||.+.+..-...+.|..++-.+-+.+
T Consensus 15 ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL 44 (61)
T PF08826_consen 15 AIQEELTKVKSANLAFESKLQEAEKRNREL 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466677666666666666666666665555
Done!