Query 015956
Match_columns 397
No_of_seqs 328 out of 1771
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 05:26:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015956.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015956hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3gke_A DDMC; rieske cluster, n 100.0 3.5E-37 1.2E-41 306.6 13.4 166 211-378 2-174 (349)
2 3n0q_A Putative aromatic-ring 100.0 3.2E-36 1.1E-40 306.5 13.4 163 211-375 35-213 (409)
3 2zyl_A Possible oxidoreductase 100.0 6.2E-36 2.1E-40 301.5 13.9 164 210-373 18-190 (386)
4 3vca_A Ring-hydroxylating diox 100.0 4E-36 1.4E-40 306.0 11.2 164 210-375 36-215 (412)
5 3gzx_A Biphenyl dioxygenase su 100.0 3.6E-35 1.2E-39 302.6 13.0 165 211-377 51-247 (457)
6 2de6_A Terminal oxygenase comp 100.0 7.4E-35 2.5E-39 293.4 14.8 162 209-374 20-192 (392)
7 2bmo_A Oxygenase-alpha NBDO; n 100.0 3.1E-35 1E-39 300.8 11.2 165 211-377 30-219 (447)
8 3gkq_A Terminal oxygenase comp 100.0 1.3E-34 4.6E-39 292.4 15.5 163 209-375 23-196 (389)
9 3gcf_A Terminal oxygenase comp 100.0 2E-34 6.9E-39 291.6 15.3 163 209-375 26-199 (394)
10 2gbw_A Biphenyl 2,3-dioxygenas 100.0 6.1E-35 2.1E-39 299.3 10.4 165 211-377 31-220 (454)
11 1z01_A 2-OXO-1,2-dihydroquinol 100.0 3.8E-34 1.3E-38 293.2 14.9 160 212-374 38-230 (446)
12 2b1x_A Naphthalene dioxygenase 100.0 4.3E-34 1.5E-38 294.4 10.2 179 179-376 24-228 (470)
13 1uli_A Biphenyl dioxygenase la 100.0 6.5E-33 2.2E-37 285.1 9.6 161 211-373 49-234 (460)
14 2qpz_A Naphthalene 1,2-dioxyge 99.9 2.7E-27 9.1E-32 196.1 11.5 101 216-321 2-103 (103)
15 2i7f_A Ferredoxin component of 99.9 2.1E-27 7.2E-32 198.5 9.9 102 217-323 3-106 (108)
16 1vm9_A Toluene-4-monooxygenase 99.9 3.8E-27 1.3E-31 197.9 11.4 104 217-325 1-106 (111)
17 1fqt_A Rieske-type ferredoxin 99.9 6.5E-27 2.2E-31 197.0 12.2 102 217-323 5-108 (112)
18 3dqy_A Toluene 1,2-dioxygenase 99.9 4.8E-27 1.6E-31 195.7 8.8 101 217-322 1-102 (106)
19 2de6_D Ferredoxin component of 99.9 6.4E-27 2.2E-31 198.5 8.9 103 216-323 3-107 (115)
20 2jo6_A Nitrite reductase [NAD( 99.9 3.1E-26 1.1E-30 192.8 11.8 100 217-321 6-112 (113)
21 3c0d_A Putative nitrite reduct 99.9 2.1E-26 7.3E-31 196.3 10.3 103 216-323 4-112 (119)
22 2jza_A Nitrite reductase [NAD( 99.9 8.5E-26 2.9E-30 195.8 13.7 104 217-325 3-113 (130)
23 3gce_A Ferredoxin component of 99.9 4.3E-26 1.5E-30 195.1 11.3 102 217-323 10-114 (121)
24 3d89_A Rieske domain-containin 99.9 4.5E-26 1.5E-30 203.0 7.2 111 214-325 13-138 (157)
25 4aiv_A Probable nitrite reduct 99.9 2.1E-25 7.2E-30 191.2 10.7 101 216-321 8-116 (119)
26 4aay_B AROB; oxidoreductase, r 99.9 3.2E-24 1.1E-28 195.7 8.5 143 156-319 5-161 (175)
27 1rie_A Rieske iron-sulfur prot 99.9 5.8E-22 2E-26 171.8 11.1 97 217-318 5-128 (129)
28 1rfs_A Rieske protein; iron-su 99.8 1E-21 3.5E-26 172.6 7.6 102 215-321 19-124 (139)
29 1g8k_B Arsenite oxidase; molyb 99.8 3.1E-21 1.1E-25 168.0 9.6 97 218-319 8-119 (133)
30 2qjy_C Ubiquinol-cytochrome C 99.8 2E-20 7E-25 172.0 5.2 96 218-318 49-186 (187)
31 3azc_A Cytochrome B6-F complex 99.7 6.6E-21 2.3E-25 166.8 0.0 97 222-323 21-121 (133)
32 3cx5_E Cytochrome B-C1 complex 99.8 7.6E-19 2.6E-23 161.4 11.2 99 215-318 60-184 (185)
33 1pp9_E Ubiquinol-cytochrome C 99.8 1.2E-18 4E-23 161.6 9.9 95 220-318 74-195 (196)
34 2nwf_A Ubiquinol-cytochrome C 99.8 1.4E-18 4.8E-23 153.3 9.7 93 222-318 6-140 (141)
35 1nyk_A Rieske iron-sulfur prot 99.7 2.5E-18 8.7E-23 155.3 9.5 98 223-325 26-151 (165)
36 1vf5_D Rieske iron-sulfur prot 99.7 7.6E-19 2.6E-23 160.1 1.9 92 224-320 70-164 (179)
37 1jm1_A Rieske iron-sulfur prot 99.6 1.7E-17 5.9E-22 154.6 0.7 85 233-321 56-167 (204)
38 3bvo_A CO-chaperone protein HS 74.8 8.4 0.00029 35.3 7.7 84 70-160 92-195 (207)
39 1fpo_A HSC20, chaperone protei 74.3 7.4 0.00025 34.5 7.0 88 69-160 49-156 (171)
40 3pp5_A BRK1, protein brick1; t 67.9 12 0.00041 29.2 5.9 57 88-150 14-70 (73)
41 3uo3_A J-type CO-chaperone JAC 66.7 27 0.00093 31.1 9.0 44 67-110 54-118 (181)
42 3p8c_E Probable protein brick1 60.8 11 0.00038 29.5 4.6 57 88-150 14-70 (75)
43 3j20_Y 30S ribosomal protein S 59.7 3.7 0.00013 29.6 1.6 37 248-285 11-47 (50)
44 3hho_A CO-chaperone protein HS 53.1 44 0.0015 29.4 7.9 88 69-160 52-160 (174)
45 2jee_A YIIU; FTSZ, septum, coi 42.0 73 0.0025 25.2 6.5 56 100-155 9-78 (81)
46 3caz_A BAR protein; thermo-aci 40.6 7.6 0.00026 35.9 0.7 72 51-141 62-136 (294)
47 2yy0_A C-MYC-binding protein; 38.4 35 0.0012 24.8 3.9 29 120-148 21-49 (53)
48 4i0x_B ESAT-6-like protein MAB 37.7 55 0.0019 25.8 5.5 38 120-157 34-81 (103)
49 2l5g_A GPS2 protein, G protein 37.7 30 0.001 23.6 3.1 29 114-142 4-32 (38)
50 3m7n_A Putative uncharacterize 37.1 19 0.00067 31.9 2.9 56 227-286 112-167 (179)
51 1pft_A TFIIB, PFTFIIBN; N-term 36.6 10 0.00036 26.5 0.8 29 258-287 7-36 (50)
52 3uul_A Utrophin; spectrin repe 35.8 94 0.0032 24.1 6.6 55 100-154 52-114 (118)
53 4emc_A Monopolin complex subun 34.8 72 0.0025 29.0 6.2 61 102-162 18-78 (190)
54 1d7m_A Cortexillin I; coiled-c 34.4 1.5E+02 0.0052 23.9 7.3 58 105-163 5-69 (101)
55 4ani_A Protein GRPE; chaperone 34.2 82 0.0028 29.0 6.7 39 120-158 68-106 (213)
56 2a26_A Calcyclin-binding prote 33.8 34 0.0012 24.6 3.1 32 117-154 3-34 (50)
57 3azd_A Short alpha-tropomyosin 33.2 16 0.00054 24.7 1.2 23 119-141 5-27 (37)
58 2wuj_A Septum site-determining 33.1 25 0.00086 25.7 2.4 33 105-140 24-56 (57)
59 3mq9_A Bone marrow stromal ant 31.5 1E+02 0.0035 30.5 7.4 59 101-159 377-449 (471)
60 3uun_A Dystrophin; triple heli 30.9 1.5E+02 0.005 22.9 7.0 56 100-155 52-115 (119)
61 3twe_A Alpha4H; unknown functi 30.6 60 0.0021 20.1 3.4 21 121-141 4-24 (27)
62 2z5i_A TM, general control pro 30.0 61 0.0021 23.3 4.0 37 119-155 13-49 (52)
63 2rjz_A PILO protein; structura 29.3 86 0.0029 26.8 5.6 43 115-158 12-54 (147)
64 2pk7_A Uncharacterized protein 28.8 31 0.001 26.3 2.3 37 258-295 10-47 (69)
65 1ic2_A Tropomyosin alpha chain 28.5 78 0.0027 24.4 4.7 32 120-151 43-74 (81)
66 2h8b_A Insulin-like 3; insulin 28.0 10 0.00035 23.7 -0.4 8 92-99 16-23 (26)
67 3j21_W 50S ribosomal protein L 27.0 1.6E+02 0.0054 22.5 6.1 28 118-145 9-36 (72)
68 2hf1_A Tetraacyldisaccharide-1 25.5 31 0.001 26.3 1.8 38 258-296 10-48 (68)
69 2jny_A Uncharacterized BCR; st 25.3 31 0.0011 26.2 1.8 38 258-296 12-50 (67)
70 2jr6_A UPF0434 protein NMA0874 24.9 32 0.0011 26.2 1.8 38 258-296 10-48 (68)
71 3hnw_A Uncharacterized protein 24.7 2.1E+02 0.0073 24.3 7.3 43 117-159 88-130 (138)
72 3a7o_A Autophagy protein 16; c 24.6 1.5E+02 0.0053 22.9 5.5 29 121-149 14-42 (75)
73 3viq_B Mating-type switching p 24.5 1.7E+02 0.0059 23.2 6.1 41 119-159 9-51 (85)
74 3qfl_A MLA10; coiled-coil, (CC 24.1 1.1E+02 0.0036 24.9 5.0 45 114-158 15-67 (115)
75 3hnw_A Uncharacterized protein 23.9 1E+02 0.0035 26.4 5.0 37 122-158 86-122 (138)
76 3mq7_A Bone marrow stromal ant 23.5 1E+02 0.0035 26.0 4.8 41 107-149 55-95 (121)
77 2js4_A UPF0434 protein BB2007; 23.1 29 0.001 26.5 1.3 37 258-295 10-47 (70)
78 2jz8_A Uncharacterized protein 22.9 77 0.0026 25.4 3.7 20 273-292 46-65 (87)
79 2r2v_A GCN4 leucine zipper; co 22.6 88 0.003 20.9 3.3 25 101-132 5-29 (34)
80 1ykh_B RNA polymerase II holoe 22.5 2.6E+02 0.0087 23.6 7.3 69 89-157 54-124 (132)
81 3u1c_A Tropomyosin alpha-1 cha 22.0 2.2E+02 0.0075 22.8 6.5 32 120-151 53-84 (101)
82 1oeg_A Apolipoprotein E; siali 21.7 38 0.0013 21.4 1.3 18 120-137 3-20 (26)
83 1z23_A CRK-associated substrat 21.4 1E+02 0.0035 27.4 4.6 63 72-134 7-105 (163)
84 4etp_A Kinesin-like protein KA 21.1 1.5E+02 0.0051 29.6 6.3 37 121-157 6-42 (403)
85 4e61_A Protein BIM1; EB1-like 20.9 2.4E+02 0.0081 23.3 6.4 32 119-150 5-36 (106)
86 2h7b_A Core-binding factor, ML 20.9 63 0.0022 26.8 2.9 37 98-135 44-80 (105)
87 3m0a_A TNF receptor-associated 20.8 2.1E+02 0.0072 20.8 5.7 43 102-150 16-58 (66)
88 3lay_A Zinc resistance-associa 20.3 1.2E+02 0.0041 27.0 5.0 44 99-142 94-137 (175)
89 4ayb_P DNA-directed RNA polyme 20.2 35 0.0012 24.5 1.1 27 258-284 5-32 (48)
No 1
>3gke_A DDMC; rieske cluster, non-heme mononuclear iron, oxygenase, oxidoreductase; 1.75A {Stenotrophomonas maltophilia} PDB: 3gb4_A 3gl0_A* 3gl2_A* 3gob_A* 3gte_A 3gts_A*
Probab=100.00 E-value=3.5e-37 Score=306.62 Aligned_cols=166 Identities=29% Similarity=0.630 Sum_probs=142.6
Q ss_pred chhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCc
Q 015956 211 NTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 290 (397)
Q Consensus 211 ~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~ 290 (397)
...+++.|++||+++|| +|+++.++++|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|+
T Consensus 2 ~~~~~~~W~~v~~~~el-~g~~~~~~~~g~~vvv~R~~~G~v~a~~n~CpHrg~~L~~G~~~~~~i~CpyHgw~fd~~G~ 80 (349)
T 3gke_A 2 ATFVRNAWYVAALPEEL-SEKPLGRTILDTPLALYRQPDGVVAALLDICPHRFAPLSDGILVNGHLQCPYHGLEFDGGGQ 80 (349)
T ss_dssp CCCCCSSCEEEECGGGC-CSSCEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCGGGCEEETTEEECTTTCCEECTTCC
T ss_pred CcccccccEEEEEHHHC-CCCeEEEEECCEEEEEEEcCCCcEEEEeCcCCCCCcCCccCCccceEEEECCCCCEEcCCCC
Confidence 45678999999999999 89999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC-ccc--ccCCccccceEEEcCEEEEeCCCCC-CC-CCCCCCC--CCCCceEeEEEEEEEecChhhHHHhhcCCC
Q 015956 291 CEKMPS-TQL--RNVKIKSLPCFEQEGMIWIWPGDEP-PT-ATIPCLL--PPSGFEIHAEIVMELPIEHGLLLDNLLDLA 363 (397)
Q Consensus 291 ~~~vP~-~~~--~~~~L~~ypV~e~~G~IwV~l~~~~-p~-~~lp~l~--~~~g~~~~~~~~~~~~~NWKl~vEN~lD~y 363 (397)
|+.+|. ... ...+|++|||.+++|+|||++++++ +. ..+|++. +..++.+. ...++++||||+++||++|+|
T Consensus 81 ~~~~P~~~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~~~~~~~p~~~~~~~~~~~~~-~~~~~~~~nwk~~~EN~~D~~ 159 (349)
T 3gke_A 81 CVHNPHGNGARPASLNVRSFPVVERDALIWIWPGDPALADPGAIPDFGCRVDPAYRTV-GGYGHVDCNYKLLVDNLMDLG 159 (349)
T ss_dssp EEECCSTTCCCCGGGCCCBCCEEEETTEEEECCSCGGGCCGGGSCCCGGGGCTTSEEE-EEEEEESSCHHHHHHHHHCGG
T ss_pred ccccCccccccccccccceeeEEEECCEEEEeeCCCCCCcccccCCccccCCCCCEEE-eEEEEEecCHHhHHHhccccc
Confidence 999995 221 2468999999999999999998764 21 1245442 22456654 456789999999999999999
Q ss_pred CCCccCcccccCCCC
Q 015956 364 HAPFTHTSTFAKGWS 378 (397)
Q Consensus 364 H~p~vH~~tf~~g~~ 378 (397)
|++++|+++++....
T Consensus 160 H~~~~H~~~~~~~~~ 174 (349)
T 3gke_A 160 HAQYVHRANAQTDAF 174 (349)
T ss_dssp GHHHHTHHHHCCTTG
T ss_pred cchhccchhhcCccc
Confidence 999999999987654
No 2
>3n0q_A Putative aromatic-ring hydroxylating dioxygenase; rieske [2Fe-2S] domain, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.80A {Ruegeria SP}
Probab=100.00 E-value=3.2e-36 Score=306.49 Aligned_cols=163 Identities=21% Similarity=0.334 Sum_probs=140.3
Q ss_pred chhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCC-CcccceeEEccccCeEEcCC
Q 015956 211 NTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHL-GSVNEGRIQCPYHGWEYSTD 288 (397)
Q Consensus 211 ~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~-G~v~~~~L~CPyHGW~Fd~d 288 (397)
..+|++.|++||+++||+ +|+++.++++|++++|+|+.+|+++||.|+|||||++|+. |.++++.|+||||||+||.+
T Consensus 35 ~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~n~C~Hrga~L~~~g~~~~~~i~CpyHgw~fd~d 114 (409)
T 3n0q_A 35 QEIFYKEWLFAIPACELDKPGSYVTHQVGNYNVIIVRGADNVIRAFHNACRHRGSVICKAKKGNNPKLVCPYHQWTYELD 114 (409)
T ss_dssp HHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSEEECSSEECTTTCCEECTT
T ss_pred HHHHhcCCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEeecCcCCcCcCCccCcCccCCCEEEECCCCCEEeCC
Confidence 457888999999999998 5999999999999999999999999999999999999995 88888999999999999999
Q ss_pred CccccCCCcc----cccCCccccceEEEcCEEEEeCCCCCCCCCCCCCC----------CCCCceEeEEEEEEEecChhh
Q 015956 289 GKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----------PPSGFEIHAEIVMELPIEHGL 354 (397)
Q Consensus 289 G~~~~vP~~~----~~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l~----------~~~g~~~~~~~~~~~~~NWKl 354 (397)
|+|+.+|... ....+|++|||++++|+|||++++++|+ +++++ ....+.+.....+.++||||+
T Consensus 115 G~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~Vfv~~~~~~~~--l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK~ 192 (409)
T 3n0q_A 115 GRLLWARDMGPDFEPSRHGLKTVHCRELAGLIYICLADEAPD--FERFAEVARPYLEVHDLSNAKVAHESSIVERGNWKL 192 (409)
T ss_dssp SCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCCC--CHHHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHHH
T ss_pred CCcccCCcCCcccCcccCCCceEEEEEECCEEEEEeCCCCCC--hHHhhhhhhhhhccccCCCeEEeeEEEEEEecchHh
Confidence 9999999753 2357899999999999999999877543 33321 112344445567789999999
Q ss_pred HHHhhcCCCCCCccCcccccC
Q 015956 355 LLDNLLDLAHAPFTHTSTFAK 375 (397)
Q Consensus 355 ~vEN~lD~yH~p~vH~~tf~~ 375 (397)
++||++|+||++++|+++++.
T Consensus 193 ~~EN~~D~yH~~~~H~~~~~~ 213 (409)
T 3n0q_A 193 VWENNRECYHCGGNHPALCRT 213 (409)
T ss_dssp HHHHHTCCTTHHHHCTTGGGT
T ss_pred hhhhccccccccccCcchhhc
Confidence 999999999999999988764
No 3
>2zyl_A Possible oxidoreductase; KSHA, cholesterol, rieske; 2.30A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.2e-36 Score=301.49 Aligned_cols=164 Identities=21% Similarity=0.424 Sum_probs=139.0
Q ss_pred cchhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCC
Q 015956 210 YNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDG 289 (397)
Q Consensus 210 ~~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG 289 (397)
.+..|.+.|++||++++|++|+++.++++|++++|+|+.+|+++|+.|+|||||++|+.|.++++.|+||||||+||.+|
T Consensus 18 ~~~~f~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R~~~G~v~a~~n~CpHrga~L~~g~~~~~~i~CpyHgw~f~~~G 97 (386)
T 2zyl_A 18 LPTRYARGWHCLGVAKDYLEGKPHGVEAFGTKLVVFADSHGDLKVLDGYCRHMGGDLSEGTVKGDEVACPFHDWRWGGDG 97 (386)
T ss_dssp CCSSCCSEEEEEEEGGGGCSSSCEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBGGGSEEETTEEECTTTCCEEETTS
T ss_pred CchhhhcceEEEEEHHHCCCCCeEEEEECCeEEEEEECCCCCEEEEcCcCCCCCCCCCCCcccCCEEEeCCCCCEECCCC
Confidence 34578889999999999999999999999999999999999999999999999999999999889999999999999999
Q ss_pred ccccCCCcccc--cCCccccceEEEcCEEEEeCCCCC-CC---CCCCCCCC--CCCceEeEEEEEEEe-cChhhHHHhhc
Q 015956 290 KCEKMPSTQLR--NVKIKSLPCFEQEGMIWIWPGDEP-PT---ATIPCLLP--PSGFEIHAEIVMELP-IEHGLLLDNLL 360 (397)
Q Consensus 290 ~~~~vP~~~~~--~~~L~~ypV~e~~G~IwV~l~~~~-p~---~~lp~l~~--~~g~~~~~~~~~~~~-~NWKl~vEN~l 360 (397)
+|+.+|..+.. ..++++|||.+++|+|||+++++. |+ ..+|.+.. ..++.......+.++ ||||+++||++
T Consensus 98 ~~~~~P~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~nwk~~~EN~~ 177 (386)
T 2zyl_A 98 RCKLVPYARRTPRMARTRSWTTDVRSGLLFVWHDHEGNPPDPAVRIPEIPEAASDEWTDWRWNRILIEGSNCRDIIDNVT 177 (386)
T ss_dssp BEEECTTCSSCCTTCBCCEECEEEETTEEEEEECTTCCCCCGGGCCCCCGGGGCTTBCCCEEEEEEEESSCGGGGGGGGG
T ss_pred CccccCcccccCcccCcceEeEEEECCEEEEEECCccCCCcccccCcccccccCCCceEEEEEEEEEcCcCHHhHhhhcc
Confidence 99999985432 357999999999999999997642 22 12343321 234443344577889 99999999999
Q ss_pred CCCCCCccCcccc
Q 015956 361 DLAHAPFTHTSTF 373 (397)
Q Consensus 361 D~yH~p~vH~~tf 373 (397)
|+||++++|+++.
T Consensus 178 D~~H~~~~H~~~~ 190 (386)
T 2zyl_A 178 DMAHFFYIHFGLP 190 (386)
T ss_dssp CSTHHHHTTCEEE
T ss_pred cccchhhhCcCcc
Confidence 9999999999753
No 4
>3vca_A Ring-hydroxylating dioxygenase; rieske-type, mononuclear non-heme iron, N-demethylase, oxido; 1.59A {Sinorhizobium meliloti} PDB: 3vcp_A
Probab=100.00 E-value=4e-36 Score=306.04 Aligned_cols=164 Identities=19% Similarity=0.299 Sum_probs=140.5
Q ss_pred cchhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCC-CCcccceeEEccccCeEEcC
Q 015956 210 YNTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLH-LGSVNEGRIQCPYHGWEYST 287 (397)
Q Consensus 210 ~~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls-~G~v~~~~L~CPyHGW~Fd~ 287 (397)
+..+|++.|++||+++||+ +|+++.++++|++++|+|+.+|+++|+.|+|||||++|+ .|.++++.|+||||||+||.
T Consensus 36 ~~~if~~~W~~v~~~~elp~~G~~~~~~i~g~~vvv~R~~dG~v~A~~n~CpHrga~L~~~g~~~~~~i~CPyHgw~fdl 115 (412)
T 3vca_A 36 LQHIFYKQWLYAVPVCQLAKAGSYTTLRVGAYEVVIVRSRDGEVRAFHNSCRHRGSLICKARQGQVAKLVCPYHQWTYEL 115 (412)
T ss_dssp HHHTTTTSCEEEEEGGGGCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCSSEEECSSEECTTTCCEECT
T ss_pred HHHHHhccCEEEEEHHHCCCCCCeEEEEECCEEEEEEEcCCCCEEEecccCCCCCCEeecccccCCCEEEcCCCCCEEcC
Confidence 3457888999999999998 699999999999999999999999999999999999998 78888899999999999999
Q ss_pred CCccccCCCcc----cccCCccccceEEEcCEEEEeCCCCCCCCCCCCCCC----------CCCceEeEEEEEEEecChh
Q 015956 288 DGKCEKMPSTQ----LRNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP----------PSGFEIHAEIVMELPIEHG 353 (397)
Q Consensus 288 dG~~~~vP~~~----~~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l~~----------~~g~~~~~~~~~~~~~NWK 353 (397)
+|+|+.+|... ..+.+|++|||++++|+|||++++++|+ ++++++ ...+.+.....+.++||||
T Consensus 116 dG~~~~~P~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~--l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~NWK 193 (412)
T 3vca_A 116 DGKLIWANDMGPDFDASKYGLKPVNLRNLDGLIYICLSDTPPD--FQTFAQLARPYLEVHDLKDAKVAFTSTIIEKGNWK 193 (412)
T ss_dssp TSCEEECTTCCTTCCGGGCSCCEEEEEEETTEEEEECSSSCCC--CHHHHHHHHHHHHTTCGGGEEEEEEEEEEESSCHH
T ss_pred CCccccCCccccccCcccCCCcEEEEEEECCEEEEEecCCCCC--HHHHhhhhHHhhccccCCCeEEeEEEEEEEccCch
Confidence 99999999753 2356899999999999999999877543 333221 1234444556778999999
Q ss_pred hHHHhhcCCCCCCccCcccccC
Q 015956 354 LLLDNLLDLAHAPFTHTSTFAK 375 (397)
Q Consensus 354 l~vEN~lD~yH~p~vH~~tf~~ 375 (397)
+++||++|+||++++|+++++.
T Consensus 194 ~~~EN~~D~yH~~~~H~~~~~~ 215 (412)
T 3vca_A 194 LVWENNRECYHCSSNHPALCRS 215 (412)
T ss_dssp HHHHHHTCCTTHHHHCHHHHTT
T ss_pred hhHhhccccccCcccCcchhhc
Confidence 9999999999999999987653
No 5
>3gzx_A Biphenyl dioxygenase subunit alpha; rieskie, non-heme iron, 2Fe-2S, aromatic hydroc catabolism, iron, iron-sulfur, metal-binding, NAD; HET: BNL MES; 1.58A {Comamonas testosteroni} PDB: 3gzy_A* 1wql_A 2xso_A 2xsh_A 2xrx_A* 2xr8_A* 2yfi_A 2yfj_A* 2yfl_A*
Probab=100.00 E-value=3.6e-35 Score=302.58 Aligned_cols=165 Identities=20% Similarity=0.318 Sum_probs=139.0
Q ss_pred chhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc-ccceeEEccccCeEEcCC
Q 015956 211 NTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS-VNEGRIQCPYHGWEYSTD 288 (397)
Q Consensus 211 ~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~-v~~~~L~CPyHGW~Fd~d 288 (397)
..+|.+.|++||+++||+ +|+++++++++++|+|+|+.+|+++||.|+|||||++|+.|. ++++.|+||||||+||.+
T Consensus 51 ~~if~~~W~~v~~~~elp~~G~~~~~~i~~~~vvv~R~~dG~v~A~~n~C~Hrga~L~~g~~g~~~~i~CpyHgw~fd~~ 130 (457)
T 3gzx_A 51 ERVFGRSWLMLGHETHIPKIGDYLTTYMGEDPVIMVRQKDQSIKVFLNQCRHRGMRIVRSDGGNAKAFTCTYHGWAYDIA 130 (457)
T ss_dssp HHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSEEECSEEECTTTCCEEETT
T ss_pred HHHHhcCCEEEeEHHHcCCCCCeEEEEECCEEEEEEECCCCeEEEEeCcCCCCCcCccCCCCCcCCEEEcCCCCCEecCC
Confidence 346778899999999998 699999999999999999999999999999999999999886 567899999999999999
Q ss_pred CccccCCCccc--------------ccCCccccceEEEcCEEEEeCCCCCCCCCCCCCCC-------------CCCceEe
Q 015956 289 GKCEKMPSTQL--------------RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP-------------PSGFEIH 341 (397)
Q Consensus 289 G~~~~vP~~~~--------------~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l~~-------------~~g~~~~ 341 (397)
|+|+.+|..+. ...+|++|+|.+++|+||||+++++|+ ++++++ +.++.+.
T Consensus 131 G~~~~~P~~~~~~~~~~~~~~~~~~~~~~L~~~~v~e~~G~Vfv~~~~~ap~--l~e~lg~~~~~ld~~~~~~~~~~~~~ 208 (457)
T 3gzx_A 131 GNLVNVPFEKEAFCDKKEGDCGFDKADWGPLQARVETYKGLVFANWDPEAPD--LKTYLSDAMPYMDVMLDRTEAGTEAI 208 (457)
T ss_dssp SCEEECTTHHHHTCSSSTTTTSCCGGGCCCCEEEEEEETTEEEEESCTTSCC--HHHHTTTCHHHHHHHHSSSTTCEEEC
T ss_pred CcceecCccccccccccccccccChhhCCCceEeEEEECCEEEEecCCCCCC--hHHHHhhhHHHHHHHhccCCCceEEE
Confidence 99999998531 135789999999999999999877543 333322 1244544
Q ss_pred -EEEEEEEecChhhHHHhh-cCCCCCC-ccCcccccCCC
Q 015956 342 -AEIVMELPIEHGLLLDNL-LDLAHAP-FTHTSTFAKGW 377 (397)
Q Consensus 342 -~~~~~~~~~NWKl~vEN~-lD~yH~p-~vH~~tf~~g~ 377 (397)
+...+.++||||+++||+ +|+||++ ++|.++++.+.
T Consensus 209 ~~~~~~~~~~NWKl~~EN~~~D~yH~~~~~H~~~~~~~~ 247 (457)
T 3gzx_A 209 GGIQKWVIPCNWKFAAEQFCSDMYHAGTMSHLSGVLAGL 247 (457)
T ss_dssp SCCEEEEESSCHHHHHHHHHHBCTTTTTTTTHHHHHHTS
T ss_pred cceEEEEEccccchhhhccccccCCcccceehhhhhccc
Confidence 246778999999999999 8999999 99998876543
No 6
>2de6_A Terminal oxygenase component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Janthinobacterium} SCOP: b.33.1.2 d.129.3.3 PDB: 1ww9_A 2de5_A 2de7_A*
Probab=100.00 E-value=7.4e-35 Score=293.37 Aligned_cols=162 Identities=25% Similarity=0.501 Sum_probs=135.5
Q ss_pred CcchhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc--cceeEEccccCeEEc
Q 015956 209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV--NEGRIQCPYHGWEYS 286 (397)
Q Consensus 209 ~~~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v--~~~~L~CPyHGW~Fd 286 (397)
.+..+|++.|++||+++||++|+++.++++|++++|+| .+|+++|+.|+|||||++|+.|.+ +++.|+||||||+||
T Consensus 20 e~~~~~~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~R-~~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~f~ 98 (392)
T 2de6_A 20 DAKLGFRNHWYPVMFSKEINEGEPKTLKLLGENLLVNR-IDGKLYCLKDRCLHRGVQLSVKVECKTKSTITCWYHAWTYR 98 (392)
T ss_dssp HCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCCSTTEEECTTTCEEEE
T ss_pred hhhhhhccccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCCCCCCCcCCcccCCCCEEEeCCCCCEEc
Confidence 44668999999999999999999999999999999999 599999999999999999999875 468999999999999
Q ss_pred C-CCccccCCCccc----ccCCccccceEEEcCEEEEeCCCCCCCC---CC-CCCCCCCCceEeEEEEEEEecChhhHHH
Q 015956 287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTA---TI-PCLLPPSGFEIHAEIVMELPIEHGLLLD 357 (397)
Q Consensus 287 ~-dG~~~~vP~~~~----~~~~L~~ypV~e~~G~IwV~l~~~~p~~---~l-p~l~~~~g~~~~~~~~~~~~~NWKl~vE 357 (397)
. +|+|+.+|..+. ...+|++|||.+++|+|||+++++.+++ .+ |.+. ..++... ....+++||||+++|
T Consensus 99 ~~~G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~~~~l~~~l~~~~~-~~~~~~~-~~~~~~~~nwk~~~E 176 (392)
T 2de6_A 99 WEDGVLCDILTNPTSAQIGRQKLKTYPVQEAKGCVFIYLGDGDPPPLARDTPPNFL-DDDMEIL-GKNQIIKSNWRLAVE 176 (392)
T ss_dssp TTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSSCCCGGGGSCTTTT-CTTEEEE-EEEEEESSCHHHHHH
T ss_pred CCCCccccccCCccccccccCCCceEeEEEECCEEEEEeCCCCCCChhHhcccccc-CCCeEEE-EEEEEEecChHhhhH
Confidence 7 999999976432 2468999999999999999997643221 12 1222 2355554 346689999999999
Q ss_pred hhcCCCCCCccCccccc
Q 015956 358 NLLDLAHAPFTHTSTFA 374 (397)
Q Consensus 358 N~lD~yH~p~vH~~tf~ 374 (397)
|++|+||+ ++|+++++
T Consensus 177 N~~D~~H~-~~H~~~~~ 192 (392)
T 2de6_A 177 NGFDPSHI-YIHKDSIL 192 (392)
T ss_dssp HHHCGGGG-GGGTTCHH
T ss_pred hcchhhhh-hhhcchhc
Confidence 99999999 99998874
No 7
>2bmo_A Oxygenase-alpha NBDO; nitrobenzene dioxygenase, nitroarene, rieske non-heme dioxygenase, substrate specificity iron- sulfur, metal-binding, NAD; 1.2A {Comamonas SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2bmq_A 2bmr_A* 2hmj_A 2hml_A* 2hmn_A* 1o7n_A 1ndo_A 1o7g_A* 1o7h_A 1o7m_A 1eg9_A 1o7p_A* 1o7w_A 1uuv_A 1uuw_A 2hmk_A* 2hmm_A* 2hmo_A*
Probab=100.00 E-value=3.1e-35 Score=300.80 Aligned_cols=165 Identities=21% Similarity=0.353 Sum_probs=138.5
Q ss_pred chhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cceeEEccccCeEEcCC
Q 015956 211 NTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTD 288 (397)
Q Consensus 211 ~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v-~~~~L~CPyHGW~Fd~d 288 (397)
..+|.+.|++||+++||+ +|+++.+.++|++|+|+|+.+|+++||.|+|||||++|+.|.. +++.|+||||||+||.+
T Consensus 30 ~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~g~~~~l~CpyHgw~f~~~ 109 (447)
T 2bmo_A 30 KTIFARNWLFLTHDSLIPSPGDYVKAKMGVDEVIVSRQNDGSVRAFLNVCRHRGKTLVHAEAGNAKGFVCGYHGWGYGSN 109 (447)
T ss_dssp HHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESBCTTTCCBCCCSSEEECSEEECTTTCCEEETT
T ss_pred HHhhccCCeEEeEHHHCCCCCCeEEEEECCeeEEEEECCCCCEEEEeccCcCCCCCccccccCCcCeEECCCCcchhcCC
Confidence 346678899999999998 6999999999999999999999999999999999999998875 56799999999999999
Q ss_pred CccccCCCcc--------cccCCccccc-eEEEcCEEEEeCCCCCCCCCCCCCCC------------CCCceEe-EEEEE
Q 015956 289 GKCEKMPSTQ--------LRNVKIKSLP-CFEQEGMIWIWPGDEPPTATIPCLLP------------PSGFEIH-AEIVM 346 (397)
Q Consensus 289 G~~~~vP~~~--------~~~~~L~~yp-V~e~~G~IwV~l~~~~p~~~lp~l~~------------~~g~~~~-~~~~~ 346 (397)
|+|+.+|..+ ....+|++|| |++++|+|||++++++|+ ++++++ ..++.+. ....+
T Consensus 110 G~~~~~P~~~~~~~~~~~~~~~~l~~~~~v~~~~G~v~v~~~~~~~~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (447)
T 2bmo_A 110 GELQSVPFEKELYGDAIKKKCLGLKEVPRIESFHGFIYGCFDAEAPP--LIDYLGDAAWYLEPTFKYSGGLELVGPPGKV 187 (447)
T ss_dssp SCEEECTTHHHHTGGGCCGGGCCCCBCSEEEEETTEEEEESCTTCCC--HHHHHTTHHHHHHHHHTTTSCEEEEEEEEEE
T ss_pred CcccccCcccccccccCCHhHCCCcccceEEEECCEEEEEcCCCCCC--HHHHhccHHHHHHHHhccCCCeEEeeeeEEE
Confidence 9999999753 1236899998 999999999999876543 333211 2345554 35677
Q ss_pred EEecChhhHHHhh-cCCCCCCccCcccccCCC
Q 015956 347 ELPIEHGLLLDNL-LDLAHAPFTHTSTFAKGW 377 (397)
Q Consensus 347 ~~~~NWKl~vEN~-lD~yH~p~vH~~tf~~g~ 377 (397)
.++||||+++||+ +|+||++++|+.+++.++
T Consensus 188 ~~~~nwk~~~EN~~~D~yH~~~~H~~~l~~~~ 219 (447)
T 2bmo_A 188 VVKANWKSFAENFVGDGYHVGWTHAAALRAGQ 219 (447)
T ss_dssp EESSCHHHHHHHHHHBCTTHHHHTHHHHHHHC
T ss_pred EECCCcchhhhcCCCCCCCCcccchhhhhccc
Confidence 8999999999999 799999999987776543
No 8
>3gkq_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske nonheme iron oxygenase, electron transfer, putidaredoxin-type ferredoxin; 2.10A {Sphingomonas}
Probab=100.00 E-value=1.3e-34 Score=292.38 Aligned_cols=163 Identities=23% Similarity=0.493 Sum_probs=137.3
Q ss_pred CcchhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc--ccceeEEccccCeEEc
Q 015956 209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYS 286 (397)
Q Consensus 209 ~~~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~--v~~~~L~CPyHGW~Fd 286 (397)
....+|++.|++||+++||++|+++.++++|++++|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||
T Consensus 23 E~e~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fd 101 (389)
T 3gkq_A 23 DAKLGFRNHWYPVRLSAEVAEASPVPVQLLGEKVLLNR-VDGVVHAIADRCLHRGVTLSDKVECYSKATISCWYHGWTYR 101 (389)
T ss_dssp HCTTCBSSEEEEEEEGGGSCBTCCEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGGCCCSBTTEEECTTTCEEEE
T ss_pred hhhhhhcCccEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeCCcCCCCCCCccCCcccCcCCEEECCCCCCEEE
Confidence 44578999999999999999999999999999999999 79999999999999999999986 4678999999999999
Q ss_pred C-CCccccCCCccc----ccCCccccceEEEcCEEEEeCCCCCCCCCCCCCC----CCCCceEeEEEEEEEecChhhHHH
Q 015956 287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----PPSGFEIHAEIVMELPIEHGLLLD 357 (397)
Q Consensus 287 ~-dG~~~~vP~~~~----~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l~----~~~g~~~~~~~~~~~~~NWKl~vE 357 (397)
. +|+|+.+|..+. ...+|++|||++++|+|||++++++++ ++++.+ ...++.+.. ....++||||+++|
T Consensus 102 l~dG~cv~iP~~P~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~p-pL~e~l~~~~~~~~~~~~~-~~~~i~~NWK~~~E 179 (389)
T 3gkq_A 102 WDNGKLVDILTNPTSVQIGRHALKTYPVREEKGLVFLFVGDQEPH-DLAEDVPPGFLDADLAVHG-QHRVVDANWRMGVE 179 (389)
T ss_dssp TTTCBEEEETTCTTCTTTTSCBCCBCCEEEETTEEEEEESSSCCC-CGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHH
T ss_pred CCCCCeecccCCcccccccccCCcEEEEEEECCeEEEecCCCCCC-CchhhcchhccCCceEEEe-EEEEEecCchhhHH
Confidence 8 999999886432 246899999999999999999754322 232221 123455443 46789999999999
Q ss_pred hhcCCCCCCccCcccccC
Q 015956 358 NLLDLAHAPFTHTSTFAK 375 (397)
Q Consensus 358 N~lD~yH~p~vH~~tf~~ 375 (397)
|++|+||+ ++|+++++.
T Consensus 180 N~lD~yH~-~vH~~si~~ 196 (389)
T 3gkq_A 180 NGFDAGHV-FIHKSSILL 196 (389)
T ss_dssp HHTCSGGG-GGGTTCHHH
T ss_pred hcchhchh-hCccccccc
Confidence 99999999 999998863
No 9
>3gcf_A Terminal oxygenase component of carbazole 1,9A- dioxygenase; rieske oxygenase, 2Fe-2S, electron transfer, oxidoreductase; 2.30A {Nocardioides aromaticivorans}
Probab=100.00 E-value=2e-34 Score=291.63 Aligned_cols=163 Identities=25% Similarity=0.471 Sum_probs=137.2
Q ss_pred CcchhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc--ccceeEEccccCeEEc
Q 015956 209 PYNTRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYS 286 (397)
Q Consensus 209 ~~~~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~--v~~~~L~CPyHGW~Fd 286 (397)
....+|++.|++||+++||++|+++.++++|++|+|+| .+|+++|+.|+|||||++|+.|. +.++.|+||||||+||
T Consensus 26 E~~~if~~~W~~V~~~~ELp~G~~~~v~i~G~~VvV~R-~dG~v~A~~N~CpHRGa~Ls~G~~~~~~~~I~CPyHGW~Fd 104 (394)
T 3gcf_A 26 EATLGFDNHWHPAAFDHELAEGEFVAVTMLGEKVLLTR-AKGEVKAIADGCAHRGVPFSKEPLCFKAGTVSCWYHGWTYD 104 (394)
T ss_dssp HCTTCEESEEEEEEEGGGCCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCBCSSTTEEECTTTCEEEE
T ss_pred hhhhhhcccCEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCeEEEeeCcCCCCCCCCcCCcccCcCCEEECCCCCcEEE
Confidence 34568999999999999999999999999999999999 79999999999999999999986 4678999999999999
Q ss_pred C-CCccccCCCccc----ccCCccccceEEEcCEEEEeCCCCCCCCCCCCCC----CCCCceEeEEEEEEEecChhhHHH
Q 015956 287 T-DGKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLL----PPSGFEIHAEIVMELPIEHGLLLD 357 (397)
Q Consensus 287 ~-dG~~~~vP~~~~----~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l~----~~~g~~~~~~~~~~~~~NWKl~vE 357 (397)
. +|+|+.+|..+. ...+|++|||++++|+|||+++++++ +++++.+ ...++.+.. ....++||||+++|
T Consensus 105 l~dG~cv~iP~~p~~~~~~~~~L~~ypV~e~~G~VfV~lgd~~~-ppL~e~L~~~~~d~~~~~~~-~~~~i~~NWK~~~E 182 (394)
T 3gcf_A 105 LDDGRLVDVLTSPGSPVIGKIGIKVYPVQVAQGVVFVFIGDEEP-HALSEDLPPGFLDEDTHLLG-IRRTVQSNWRLGVE 182 (394)
T ss_dssp TTTCBEEEETTSTTCTTTTSCBCCEECEEEETTEEEEEESSSCC-CCGGGGSCTTTTCTTEEEEE-EEEEESSCHHHHHH
T ss_pred CCCCceeccCCCcccccccccCceEEEEEEECCcEEEecCCCCC-CCchhhcchhhcCCceEEEe-EEEEEecCchhhHh
Confidence 8 899999887532 24689999999999999999975432 2232221 123455443 46789999999999
Q ss_pred hhcCCCCCCccCcccccC
Q 015956 358 NLLDLAHAPFTHTSTFAK 375 (397)
Q Consensus 358 N~lD~yH~p~vH~~tf~~ 375 (397)
|++|.||+ ++|+++++.
T Consensus 183 N~lD~yH~-~vH~~ti~~ 199 (394)
T 3gcf_A 183 NGFDTTHI-FMHRNSPWV 199 (394)
T ss_dssp HHSCSSGG-GGGTTCHHH
T ss_pred hccccchh-hCchhhhcc
Confidence 99999999 999999874
No 10
>2gbw_A Biphenyl 2,3-dioxygenase alpha subunit; rieske oxygenase, oxidoreductase, non heme iron; 1.70A {Sphingobium yanoikuyae} PDB: 2gbx_A* 2ckf_A
Probab=100.00 E-value=6.1e-35 Score=299.34 Aligned_cols=165 Identities=19% Similarity=0.331 Sum_probs=138.2
Q ss_pred chhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cceeEEccccCeEEcCC
Q 015956 211 NTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTD 288 (397)
Q Consensus 211 ~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v-~~~~L~CPyHGW~Fd~d 288 (397)
..+|.+.|++||+++||+ +|+++.+.+++++|+|+|+.+|+++||.|+|||||++|+.|.. +++.|+||||||+||.+
T Consensus 31 ~~if~~~W~~v~~~~el~~~g~~~~~~~~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~f~~~ 110 (454)
T 2gbw_A 31 ERIFSRAWLMLGHESLVPKPGDFITTYMAEDKVILSHQSDGTFRAFINSCSHRGNQICHADSGNAKAFVCNYHGWVFGQD 110 (454)
T ss_dssp HHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESSCTTTCCCSCCCSEEECSEEECTTTCCEEETT
T ss_pred HHHhhcCcEEEeEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEeccCCCCCCCCcccccCCcCEEEeCCCCCEecCC
Confidence 346778899999999999 6999999999999999999999999999999999999998765 56799999999999999
Q ss_pred CccccCCCccc--------ccCCccccceEEEcCEEEEeCCCCCCCCCCCCCCC-------------CCCceEe-EEEEE
Q 015956 289 GKCEKMPSTQL--------RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP-------------PSGFEIH-AEIVM 346 (397)
Q Consensus 289 G~~~~vP~~~~--------~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l~~-------------~~g~~~~-~~~~~ 346 (397)
|+|+.+|..+. ...+|++|+|.+++|+|||+++++.|+ ++++++ +.++.+. ....+
T Consensus 111 G~~~~~P~~~~~~~~~~~~~~~~l~~~~v~~~~G~v~v~~~~~~p~--~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 188 (454)
T 2gbw_A 111 GSLVDVPLESRCYHNSLDKQKLAAKSVRVETYKGFIFGCHDPEAPS--LEDYLGEFRYYLDTIWEGAGGGMELLGPPMKS 188 (454)
T ss_dssp SCEEECTTTTTTTTTCCCGGGCCCCEEEEEEETTEEEEECCTTCCC--HHHHHGGGHHHHHHHHTTTTTCEEEEEEEEEE
T ss_pred CCcccCCcccccccccCCHhhCCCeeEEEEEECCEEEEEeCCCCCC--HHHHhhhhHHHHHHHHhcCCCceEEEeeEEEE
Confidence 99999997532 135799999999999999999876543 333211 2345554 35677
Q ss_pred EEecChhhHHHhh-cCCCCCCccCcccccCCC
Q 015956 347 ELPIEHGLLLDNL-LDLAHAPFTHTSTFAKGW 377 (397)
Q Consensus 347 ~~~~NWKl~vEN~-lD~yH~p~vH~~tf~~g~ 377 (397)
.++||||+++||+ +|+||++++|+.+++.++
T Consensus 189 ~~~~Nwk~~~EN~~~D~yH~~~~H~~~~~~~~ 220 (454)
T 2gbw_A 189 LLQCNWKVPAENFIGDGYHVGWTHAAALSQIG 220 (454)
T ss_dssp EESSCTHHHHHHHHHBCTTHHHHTHHHHHHHC
T ss_pred EeCCCccchhhhcCCccCCCCcCCHhHHhccc
Confidence 8999999999999 799999999987776543
No 11
>1z01_A 2-OXO-1,2-dihydroquinoline 8-monooxygenase, oxygenase component; rieske center, oxygen binding/activation, substrate bound complex; 1.80A {Pseudomonas putida} SCOP: b.33.1.2 d.129.3.3 PDB: 1z02_A 1z03_A*
Probab=100.00 E-value=3.8e-34 Score=293.24 Aligned_cols=160 Identities=21% Similarity=0.402 Sum_probs=132.1
Q ss_pred hhcccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCc--ccceeEEccccCeEEcC-C
Q 015956 212 TRLKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGS--VNEGRIQCPYHGWEYST-D 288 (397)
Q Consensus 212 ~~~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~--v~~~~L~CPyHGW~Fd~-d 288 (397)
.+|++.|++||++++|++|+++.++++|++++|+| .+|+++|+.|+|||||++|+.|. ++++.|+||||||+||+ +
T Consensus 38 ~if~~~W~~v~~~~el~~g~~~~~~~~g~~vvl~r-~~G~v~a~~n~CpHrga~L~~g~~~~~~~~i~CpyHgw~fd~~~ 116 (446)
T 1z01_A 38 WGFINHWYPALFTHELEEDQVQGIQICGVPIVLRR-VNGKVFALKDQCLHRGVRLSEKPTCFTKSTISCWYHGFTFDLET 116 (446)
T ss_dssp TCBCSEEEEEEEGGGSCBTCEEEEEETTEEEEEEE-ETTEEEEEESSCTTTCCCGGGSCCCSSTTEEECTTTCEEEETTT
T ss_pred hhhhhceEEEEEHHHCCCCCeEEEEECCEEEEEEE-eCCEEEEEeCcCCCCcCCCCCCccCCCCCEEEeCCCCeEEeCCC
Confidence 36788999999999999999999999999999999 79999999999999999999986 46789999999999997 9
Q ss_pred CccccCCCccc----ccCCccccceEEEcCEEEEeCCCCC------CCC--CCCC-CC-----------------CCCCc
Q 015956 289 GKCEKMPSTQL----RNVKIKSLPCFEQEGMIWIWPGDEP------PTA--TIPC-LL-----------------PPSGF 338 (397)
Q Consensus 289 G~~~~vP~~~~----~~~~L~~ypV~e~~G~IwV~l~~~~------p~~--~lp~-l~-----------------~~~g~ 338 (397)
|+|+.+|..+. ...+|++|||.+++|+|||+++++. |+. .+|. +. ...++
T Consensus 117 G~~~~~p~~p~~~~~~~~~l~~~~v~~~~G~V~v~~~~~~~p~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (446)
T 1z01_A 117 GKLVTIVANPEDKLIGTTGVTTYPVHEVNGMIFVFVREDDFPDEDVPPLAHDLPFRFPERSEQFPHPLWPSSPSVLDDNA 196 (446)
T ss_dssp CBEEEETTCTTCTTTTSCBCCEECEEEETTEEEEEECCTTCCGGGCCCGGGGSCCCTTTTTTTSCCTTSCCCCCTTSTTE
T ss_pred CCccccCCCccccCcccCCCcEEEEEEECCEEEEEeCCccccccCCCChhHhccchhhhhhhccccccccccccccCCCe
Confidence 99999876431 2468999999999999999997642 111 1221 00 01244
Q ss_pred eEeEEEEEEEecChhhHHHhhcCCCCCCccCccccc
Q 015956 339 EIHAEIVMELPIEHGLLLDNLLDLAHAPFTHTSTFA 374 (397)
Q Consensus 339 ~~~~~~~~~~~~NWKl~vEN~lD~yH~p~vH~~tf~ 374 (397)
.+. ....+++||||+++||++|+||+ ++|+++++
T Consensus 197 ~~~-~~~~~~~~nwk~~~EN~~D~~H~-~vH~~~~~ 230 (446)
T 1z01_A 197 VVH-GMHRTGFGNWRIACENGFDNAHI-LVHKDNTI 230 (446)
T ss_dssp EEE-EEEEEEESCHHHHHTTTTCTTGG-GGGTTCHH
T ss_pred EEE-eEEEEEcCCHHHHHHhccchhhh-hhhhhhhh
Confidence 443 34568999999999999999999 99998875
No 12
>2b1x_A Naphthalene dioxygenase large subunit; rieske non-heme iron oxygenase, oxidoreductase; 2.00A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 2b24_A
Probab=100.00 E-value=4.3e-34 Score=294.36 Aligned_cols=179 Identities=20% Similarity=0.342 Sum_probs=143.7
Q ss_pred cCCCCCCchhhhhhhcCCCCCcccccCCCCCcchhcccceEEeeecCCCCC-CCceeEeeCCeeEEEEEcCCCcEEEEee
Q 015956 179 CASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKD-DTMVPFDCFEEPWVIFRGKDGIPGCVQN 257 (397)
Q Consensus 179 sa~~~tS~e~~~~~~~~~~~~sl~v~~~~~~~~~~~~~~W~~Va~ssdL~~-G~~~~v~i~G~~IVV~R~~dG~i~A~~N 257 (397)
.+.--+|++.++.|.++ +|.+.|++||+++||++ |+++.++++|++|+|+|+.+|+++||.|
T Consensus 24 p~~~Ytd~~~~~~E~~~-----------------if~~~W~~v~~~~el~~~g~~~~~~~~g~~vvv~R~~~G~v~a~~n 86 (470)
T 2b1x_A 24 PAAIINDPEVHDVERER-----------------IFGHAWVFLAHESEIPERGDYVVRYISEDQFIVCRDEGGEIRGHLN 86 (470)
T ss_dssp EGGGSSCHHHHHHHHHH-----------------TTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEES
T ss_pred CHHHcCCHHHHHHHHHH-----------------HhhcCCeEeeeHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEec
Confidence 34445566666655543 56778999999999995 8899999999999999999999999999
Q ss_pred cCCCCCCCCCCCcccc-eeEEccccCeEEcCCCccccCCCccc--------ccCCcccc-ceEEEcCEEEEeCCCCCCCC
Q 015956 258 TCAHRACPLHLGSVNE-GRIQCPYHGWEYSTDGKCEKMPSTQL--------RNVKIKSL-PCFEQEGMIWIWPGDEPPTA 327 (397)
Q Consensus 258 ~CPHRGa~Ls~G~v~~-~~L~CPyHGW~Fd~dG~~~~vP~~~~--------~~~~L~~y-pV~e~~G~IwV~l~~~~p~~ 327 (397)
+|||||++|+.|.+.+ +.|+||||||+||.+|+|+.+|..+. ...+|.++ .|++++|+|||++++++|+
T Consensus 87 ~C~Hrga~L~~g~~~~~~~i~CpyHgw~f~~~G~~~~~P~~~~~~~~~~~~~~~~l~~~p~ve~~~G~Vfv~~~~~~~~- 165 (470)
T 2b1x_A 87 ACRHRGMQVCRAEMGNTSHFRCPYHGWTYSNTGSLVGVPAGKDAYGNQLKKSDWNLRPMPNLASYKGLIFGSLDPHADS- 165 (470)
T ss_dssp SCTTTCCCSCCSSEEECSEEECTTTCCEEETTSCEEECTTTTTTTTTCCCGGGGSCCBCSEEEEETTEEEEESCTTCCC-
T ss_pred ccCCCCCEeeccCcCCCCEEEECCCCCeecCCCceeecCcccccccccCCHhhCCCcccceEEEECCEEEEEeCCCCCC-
Confidence 9999999999887654 79999999999999999999997532 13578888 4666799999999876543
Q ss_pred CCCCCCC-------------CCCceEeE-EEEEEEecChhhHHHhh-cCCCCCCccCcccccCC
Q 015956 328 TIPCLLP-------------PSGFEIHA-EIVMELPIEHGLLLDNL-LDLAHAPFTHTSTFAKG 376 (397)
Q Consensus 328 ~lp~l~~-------------~~g~~~~~-~~~~~~~~NWKl~vEN~-lD~yH~p~vH~~tf~~g 376 (397)
++++++ ..++.+.. ...++++||||+++||+ +|+||++++|++++..+
T Consensus 166 -~~~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~NWk~~~EN~~~D~yH~~~~H~~~~~~~ 228 (470)
T 2b1x_A 166 -LEDYLGDLKFYLDIVLDRSDAGLQVVGAPQRWVIDANWKLGADNFVGDAYHTMMTHRSMVELG 228 (470)
T ss_dssp -HHHHHGGGHHHHHHHHCSSSSCEEECSCCEEEEESSCTHHHHHHHHHCCTTHHHHTHHHHHHT
T ss_pred -HHHHhcchhHHHHHHhccCCCCeEEEeeeEEEEeccCHhhhhhccccccCcccccChhhhhcc
Confidence 332211 23455543 46778999999999999 99999999999876543
No 13
>1uli_A Biphenyl dioxygenase large subunit; alpha3 BETA3 hetero hexamer, oxidoreductase; 2.20A {Rhodococcus SP} SCOP: b.33.1.2 d.129.3.3 PDB: 1ulj_A* 3en1_A* 3eqq_A
Probab=99.97 E-value=6.5e-33 Score=285.07 Aligned_cols=161 Identities=20% Similarity=0.343 Sum_probs=133.9
Q ss_pred chhcccceEEeeecCCCC-CCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcc-cceeEEccccCeEEcCC
Q 015956 211 NTRLKNFWFPVAFSTDLK-DDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSV-NEGRIQCPYHGWEYSTD 288 (397)
Q Consensus 211 ~~~~~~~W~~Va~ssdL~-~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v-~~~~L~CPyHGW~Fd~d 288 (397)
..+|.+.|++||+++||+ +|+++.+.+++++|+|+|+.+|+++||.|+|||||++|+.|.. +++.|+||||||+||.+
T Consensus 49 ~~if~~~W~~v~~~~el~~~g~~~~~~i~~~~vvv~R~~~G~v~a~~n~CpHrga~L~~g~~g~~~~i~CpyHgw~fd~~ 128 (460)
T 1uli_A 49 ERIFGRSWLLMGHETQIPKAGDFMTNYMGEDPVMVVRQKNGEIRVFLNQCRHRGMRICRADGGNAKSFTCSYHGWAYDTG 128 (460)
T ss_dssp HHTTTTSCEEEEEGGGSCSTTEEEEEEETTEEEEEEECTTSCEEEEESCCTTTCCCSCCSSEEECSCEECTTTCCEECTT
T ss_pred HHhhhcCceEEEEHHHCCCCCCeEEEEECCeEEEEEEcCCCCEEEEeeeCCCCCCCCccccCCCCCEEEcCCCCCEEeCC
Confidence 346778899999999998 5888999999999999999999999999999999999998865 45799999999999999
Q ss_pred CccccCCCccc-------ccCCccccceEEEcCEEEEeCCCCCCCCCCCCCCC-------------CCCceE-eEEEEEE
Q 015956 289 GKCEKMPSTQL-------RNVKIKSLPCFEQEGMIWIWPGDEPPTATIPCLLP-------------PSGFEI-HAEIVME 347 (397)
Q Consensus 289 G~~~~vP~~~~-------~~~~L~~ypV~e~~G~IwV~l~~~~p~~~lp~l~~-------------~~g~~~-~~~~~~~ 347 (397)
|+|+.+|..+. ...+|++|+|++++|+|||++++++|+ ++++++ +.++.+ .....++
T Consensus 129 G~~~~~P~~~~~~~~~~~~~~~L~~~~v~~~~G~V~v~~~~~~p~--l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 206 (460)
T 1uli_A 129 GNLVSVPFEEQAFPGLRKEDWGPLQARVETYKGLIFANWDADAPD--LDTYLGEAKFYMDHMLDRTEAGTEAIPGIQKWV 206 (460)
T ss_dssp CCEEECTTHHHHCTTCCGGGSSCCEEEEEEETTEEEEECCTTSCC--HHHHHTTHHHHHHHHHCSSTTCEEECSCCEEEE
T ss_pred CCEeeCCccccccCCCCHhHcCCceeeEEEECCEEEEEeCCCCCC--HHHHhcchHHHHHHHhhcCCCceEEEeeEEEEE
Confidence 99999997531 236799999999999999999876543 222211 123444 2345678
Q ss_pred EecChhhHHHhh-cCCCCC-CccCcccc
Q 015956 348 LPIEHGLLLDNL-LDLAHA-PFTHTSTF 373 (397)
Q Consensus 348 ~~~NWKl~vEN~-lD~yH~-p~vH~~tf 373 (397)
++||||+++||+ +|+||+ .++|..++
T Consensus 207 ~~~Nwk~~~EN~~~D~yH~~~~~H~~~~ 234 (460)
T 1uli_A 207 IPCNWKFAAEQFCSDMYHAGTTSHLSGI 234 (460)
T ss_dssp ECSCHHHHHHHHHHBHHHHHTTTTHHHH
T ss_pred eccCHHHHHhhcCCCCCCchhhhhhhcc
Confidence 999999999999 799999 69998665
No 14
>2qpz_A Naphthalene 1,2-dioxygenase system ferredoxin subunit; rieske ferredoxin, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport, iron; 1.85A {Pseudomonas putida}
Probab=99.94 E-value=2.7e-27 Score=196.11 Aligned_cols=101 Identities=19% Similarity=0.315 Sum_probs=95.0
Q ss_pred cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccC
Q 015956 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 294 (397)
Q Consensus 216 ~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~v 294 (397)
..|++|+.++||++|+++.+++.|++++|+| .+|+++|+.|+|||+|++|+.|.+.++.|+||||||+||. +|+|+..
T Consensus 2 ~~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~~G~~~~~ 80 (103)
T 2qpz_A 2 VKWIEAVALSDILEGDVLGVTVEGKELALYE-VEGEIYATDNLCTHGSARMSDGYLEGREIECPLHQGRFDVCTGKALCA 80 (103)
T ss_dssp CCEEEEEETTSCCTTCEEEEEETTEEEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTTCEEETTTCCEEET
T ss_pred CccEEEEEHHHcCCCCEEEEEECCEEEEEEE-ECCEEEEECCcCCCCCCCCCCCeEeCCEEECCCCCCEEeCCCCCEeCC
Confidence 3699999999999999999999999999999 7999999999999999999999988899999999999997 9999999
Q ss_pred CCcccccCCccccceEEEcCEEEEeCC
Q 015956 295 PSTQLRNVKIKSLPCFEQEGMIWIWPG 321 (397)
Q Consensus 295 P~~~~~~~~L~~ypV~e~~G~IwV~l~ 321 (397)
|.. .+|++|||++++|+|||+++
T Consensus 81 P~~----~~L~~~~v~~~~g~v~v~~~ 103 (103)
T 2qpz_A 81 PVT----QNIKTYPVKIENLRVMIDLS 103 (103)
T ss_dssp TCC----SCCCEECEEEETTEEEEECC
T ss_pred CCC----CCCCEEeEEEECCEEEEEcC
Confidence 974 37999999999999999873
No 15
>2i7f_A Ferredoxin component of dioxygenase; rieske ferredoxin, oxidoreductase; HET: CIT; 1.90A {Sphingobium yanoikuyae}
Probab=99.94 E-value=2.1e-27 Score=198.53 Aligned_cols=102 Identities=24% Similarity=0.380 Sum_probs=94.8
Q ss_pred ceEEeeecCCCCCCCceeEeeCCee-EEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccC
Q 015956 217 FWFPVAFSTDLKDDTMVPFDCFEEP-WVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 294 (397)
Q Consensus 217 ~W~~Va~ssdL~~G~~~~v~i~G~~-IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~v 294 (397)
.|++|+.++||++|+++.+++.|++ ++|+|. +|+++|+.|+|||+|++|+.|.++++.|+||||||+||+ +|+|+..
T Consensus 3 ~w~~v~~~~~l~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~tG~~~~~ 81 (108)
T 2i7f_A 3 NKLRLCQVASVKDGEPVAVYQEKMPALAVYNV-DGEVFVTDNLCTHGNAMLTDGYQDGTIIECPFHGGSFDIATGAAKAF 81 (108)
T ss_dssp CEEEEEEGGGCBTTBCEEECCTTSSCEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTEEECSSTTCEEETTTCCBCST
T ss_pred ccEEEEEHhHcCCCCeEEEEECCeeEEEEEEE-CCEEEEEeCcCCCCCCCCCCCEEeCCEEEcCCCCCEEeCCCcCEeCC
Confidence 4999999999999999999999999 999997 999999999999999999999888899999999999996 9999999
Q ss_pred CCcccccCCccccceEEEcCEEEEeCCCC
Q 015956 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (397)
Q Consensus 295 P~~~~~~~~L~~ypV~e~~G~IwV~l~~~ 323 (397)
|.. .+|++|||++++|+|||+++++
T Consensus 82 P~~----~~L~~~~v~~~~g~v~v~~~~~ 106 (108)
T 2i7f_A 82 PCQ----IPIKTYPVTIEDGWVCIDQPKE 106 (108)
T ss_dssp TCC----SCCCEECEEEETTEEEEECC--
T ss_pred CCC----CCccEEeEEEECCEEEEeCCCC
Confidence 974 4799999999999999998654
No 16
>1vm9_A Toluene-4-monooxygenase system protein C; structural genomics, CESG, protein structure initiative, PSI, ferredoxin, FES, [2Fe-2S] cluster; 1.48A {Pseudomonas mendocina} SCOP: b.33.1.1 PDB: 2q3w_A 1sjg_A
Probab=99.94 E-value=3.8e-27 Score=197.89 Aligned_cols=104 Identities=19% Similarity=0.285 Sum_probs=96.1
Q ss_pred ceEEeeecCCCCCCCceeEee-CCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccC
Q 015956 217 FWFPVAFSTDLKDDTMVPFDC-FEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKM 294 (397)
Q Consensus 217 ~W~~Va~ssdL~~G~~~~v~i-~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~v 294 (397)
.|++|+.++||++|+++.+++ .|++++|+|..+|+++|+.|+|||+|++|+.|.++++.|+||||||+||. +|+|+.
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~~g~~v~v~r~~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fd~~tG~~~~- 79 (111)
T 1vm9_A 1 SFEKICSLDDIWVGEMETFETSDGTEVLIVNSEEHGVKAYQAMCPHQEILLSEGSYEGGVITCRAHLWTFNDGTGHGIN- 79 (111)
T ss_dssp CCEEEEEGGGSCTTCEEEEECTTCCEEEEEEETTTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCBBSS-
T ss_pred CcEEEEEHHHCCCCCeEEEEEcCCCEEEEEEeCCCeEEEEeCcCCCCCcCCCCceEcCCEEEcCCCCCEEeCCCccCCC-
Confidence 499999999999999999999 99999999988999999999999999999999888899999999999998 599998
Q ss_pred CCcccccCCccccceEEEcCEEEEeCCCCCC
Q 015956 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (397)
Q Consensus 295 P~~~~~~~~L~~ypV~e~~G~IwV~l~~~~p 325 (397)
|.. .+|++|++++++|+|||++++++|
T Consensus 80 p~~----~~L~~~~v~~~~g~v~v~~~~~~~ 106 (111)
T 1vm9_A 80 PDD----AALAEYPVEVKGDDIYVSTKGILP 106 (111)
T ss_dssp SSS----CBCCEECEEEETTEEEECCTTCCC
T ss_pred CCc----CCcCEEEEEEECCEEEEeccCcCC
Confidence 653 479999999999999999976644
No 17
>1fqt_A Rieske-type ferredoxin of biphenyl dioxygenase; 2Fe-2S cluster, beta sandwich, oxido; 1.60A {Burkholderia xenovorans} SCOP: b.33.1.1 PDB: 2e4q_A 2e4p_A 2yvj_B*
Probab=99.94 E-value=6.5e-27 Score=196.96 Aligned_cols=102 Identities=18% Similarity=0.243 Sum_probs=95.6
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCC-cccceeEEccccCeEEcC-CCccccC
Q 015956 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG-SVNEGRIQCPYHGWEYST-DGKCEKM 294 (397)
Q Consensus 217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G-~v~~~~L~CPyHGW~Fd~-dG~~~~v 294 (397)
.|++|+.++||++|+++.+++.|++++|+|. +|+++||.|+|||+|++|+.| .++++.|+||||||+||. +|+|+..
T Consensus 5 ~w~~v~~~~~l~~g~~~~~~~~g~~i~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~~i~CP~Hg~~Fd~~tG~~~~~ 83 (112)
T 1fqt_A 5 KFTRVCDRRDVPEGEALKVESGGTSVAIFNV-DGELFATQDRCTHGDWSLSDGGYLEGDVVECSLHMGKFCVRTGKVKSP 83 (112)
T ss_dssp CCEEEEEGGGSCTTCEEEEEETTEEEEEEEE-TTEEEEEESBCTTSSCBSSTTCCEETTEEECTTTCCEEETTTCCEEES
T ss_pred ceEEeEeHHHCCCCCeEEEEECCEEEEEEEE-CCEEEEEECCCCCCCcCCCCCCEEcCCEEECCCCCCEEeCCCCcEeCC
Confidence 5999999999999999999999999999997 999999999999999999998 788889999999999998 8999999
Q ss_pred CCcccccCCccccceEEEcCEEEEeCCCC
Q 015956 295 PSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (397)
Q Consensus 295 P~~~~~~~~L~~ypV~e~~G~IwV~l~~~ 323 (397)
|.. .+|++|||++++|+|||+++++
T Consensus 84 P~~----~~L~~~~v~~~~g~v~v~~~~~ 108 (112)
T 1fqt_A 84 PPC----EALKIFPIRIEDNDVLVDFEAG 108 (112)
T ss_dssp SCC----SCCCBCCEEEETTEEEECTTCC
T ss_pred CCC----CCccEEEEEEECCEEEEEeccc
Confidence 974 4799999999999999998654
No 18
>3dqy_A Toluene 1,2-dioxygenase system ferredoxin subunit; rieske, iron-sulfur cluster, 2Fe-2S, aromatic hydrocarbons catabolism, electron transport; 1.20A {Pseudomonas putida} SCOP: b.33.1.0 PDB: 4emj_B*
Probab=99.94 E-value=4.8e-27 Score=195.73 Aligned_cols=101 Identities=23% Similarity=0.348 Sum_probs=95.1
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCccccCC
Q 015956 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEKMP 295 (397)
Q Consensus 217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~vP 295 (397)
+|++|+.++||++|+++.+.+.|++++|+| .+|+++|+.|+|||+|++|+.|.++++.|+||||||+||+ +|+|+.+|
T Consensus 1 ~W~~v~~~~~l~~g~~~~~~~~g~~i~v~r-~~g~~~A~~~~CpH~g~~L~~g~~~~~~i~Cp~Hg~~Fdl~~G~~~~~P 79 (106)
T 3dqy_A 1 TWTYILRQGDLPPGEMQRYEGGPEPVMVCN-VDGEFFAVQDTCTHGDWALSDGYLDGDIVECTLHFGKFCVRTGKVKALP 79 (106)
T ss_dssp CCEEEEEGGGSCTTCEEEECCSSSCEEEEE-ETTEEEEEESBCSSSSCBGGGSEEETTEEECTTTCCEEETTTCCEEETT
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEE-ECCEEEEEeCcCCCCCCCCcCcEEeCCEEECCCCCCEEeCCCCCEeCCC
Confidence 599999999999999999999999999999 6999999999999999999999988899999999999995 99999999
Q ss_pred CcccccCCccccceEEEcCEEEEeCCC
Q 015956 296 STQLRNVKIKSLPCFEQEGMIWIWPGD 322 (397)
Q Consensus 296 ~~~~~~~~L~~ypV~e~~G~IwV~l~~ 322 (397)
.. .+|++||+++++|.|||++++
T Consensus 80 ~~----~~L~~~~v~~~~g~v~v~~~~ 102 (106)
T 3dqy_A 80 AC----KPIKVFPIKVEGDEVHVDLDN 102 (106)
T ss_dssp CC----SCCCEECEEEETTEEEECGGG
T ss_pred CC----CCccEEEEEEECCEEEEEccc
Confidence 74 489999999999999999854
No 19
>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D*
Probab=99.94 E-value=6.4e-27 Score=198.49 Aligned_cols=103 Identities=21% Similarity=0.465 Sum_probs=96.0
Q ss_pred cceEEeeecCCCCCCCceeEeeCCe-eEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC-CCcccc
Q 015956 216 NFWFPVAFSTDLKDDTMVPFDCFEE-PWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST-DGKCEK 293 (397)
Q Consensus 216 ~~W~~Va~ssdL~~G~~~~v~i~G~-~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~-dG~~~~ 293 (397)
+.|++|+.++||++|+++.+++.|+ +++|+|. +|+++|+.|+|||+|++|+.|.+.++.|+||||||+||+ +|+|+.
T Consensus 3 ~~w~~v~~~~el~~g~~~~~~~~g~~~v~v~r~-~g~~~A~~n~CpH~g~~L~~g~~~~~~i~CP~Hg~~Fdl~tG~~~~ 81 (115)
T 2de6_D 3 QIWLKVCAASDMQPGTIRRVNRVGAAPLAVYRV-GDQFYATEDTCTHGIASLSEGTLDGDVIECPFHGGAFNVCTGMPAS 81 (115)
T ss_dssp -CCEEEEEGGGCCTTEEEEEEETTEEEEEEEEE-TTEEEEEESBCTTSSCBGGGSEEETTEEECTTTCCEEETTTCCEEE
T ss_pred cceEEeEEHHHCCCCCeEEEEECCccEEEEEEE-CCEEEEEeCCCCCCCCCCcCCEEeCCEEECCCCCCEEcCCCcCEeC
Confidence 5699999999999999999999999 9999997 999999999999999999999888899999999999996 999999
Q ss_pred CCCcccccCCccccceEEEcCEEEEeCCCC
Q 015956 294 MPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (397)
Q Consensus 294 vP~~~~~~~~L~~ypV~e~~G~IwV~l~~~ 323 (397)
.|.. .+|++|||++++|+|||+++++
T Consensus 82 ~P~~----~~L~~~~v~~~~g~V~v~~~~~ 107 (115)
T 2de6_D 82 SPCT----VPLGVFEVEVKEGEVYVAGEKK 107 (115)
T ss_dssp TTCC----SCCCEEEEEESSSEEEEEEEEC
T ss_pred CCCc----CCCCEEEEEEECCEEEEecCCc
Confidence 9974 4799999999999999998654
No 20
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=99.93 E-value=3.1e-26 Score=192.83 Aligned_cols=100 Identities=19% Similarity=0.217 Sum_probs=92.5
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCC-cEEEEeecCCCCCC-CCCCCcccc---e-eEEccccCeEEcC-CC
Q 015956 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVNE---G-RIQCPYHGWEYST-DG 289 (397)
Q Consensus 217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG-~i~A~~N~CPHRGa-~Ls~G~v~~---~-~L~CPyHGW~Fd~-dG 289 (397)
.|+.|+.++||++|+++.+++.|++++|+|..+| +++|+.|+|||+|+ +|+.|.+.+ . .|+||||||+||. +|
T Consensus 6 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fd~~tG 85 (113)
T 2jo6_A 6 QWKDICKIDDILPETGVCALLGDEQVAIFRPYHSDQVFAISNIDPFFESSVLSRGLIAEHQGELWVASPLKKQRFRLSDG 85 (113)
T ss_dssp CCEEEEETTTSCTTEEEEEEETTEEEEEEECSSSSCCEEEESSCSSSCCSCSTTSEEEEETTEEEEEETTTTEEEETTTT
T ss_pred hheEEeeHHHCCCCCeEEEEECCEEEEEEEECCCCEEEEEeCcCCCCCCcccCCeEEeccCCCcEEECCCCCCEEeCCCc
Confidence 4999999999999999999999999999998799 69999999999999 799998752 3 8999999999998 99
Q ss_pred ccccCCCcccccCCccccceEEEcCEEEEeCC
Q 015956 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 321 (397)
Q Consensus 290 ~~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l~ 321 (397)
+|+..|. .+|++|||++++|+|||+++
T Consensus 86 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~ 112 (113)
T 2jo6_A 86 LCMEDEQ-----FSVKHYEARVKDGVVQLRGG 112 (113)
T ss_dssp EETTTTT-----TCCCEEEEEEETTEEEEECC
T ss_pred cCCCCCc-----ccccEEeEEEECCEEEEEcC
Confidence 9999997 37999999999999999974
No 21
>3c0d_A Putative nitrite reductase NADPH (small subunit) oxidoreductase protein; NESG, VPR162, Q87HB1, XRAY, structure; 2.40A {Vibrio parahaemolyticus rimd 2210633} SCOP: b.33.1.3
Probab=99.93 E-value=2.1e-26 Score=196.33 Aligned_cols=103 Identities=14% Similarity=0.016 Sum_probs=95.1
Q ss_pred cceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCC-CCCCCcccce----eEEccccCeEEcC-CC
Q 015956 216 NFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRAC-PLHLGSVNEG----RIQCPYHGWEYST-DG 289 (397)
Q Consensus 216 ~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa-~Ls~G~v~~~----~L~CPyHGW~Fd~-dG 289 (397)
..|++|+.++||++|+++.+++.|++++|+|..+|+++|+.|+|||+|+ +|+.|.+.+. .|+||||||+||. +|
T Consensus 4 ~~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~~~G~~~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 83 (119)
T 3c0d_A 4 LTKVKLCQLDDLMPFIGATVLIEGERVALFYIPDSGVYAVQDWDPIGKAYVMSRGIVGDINGEMCVASPLYKQHFSLKSG 83 (119)
T ss_dssp CCEEEEEEGGGSCBTCCEEEEETTEEEEEEEETTTEEEEEESEETTTTEECGGGSEEEESSSSEEEECTTTCCEEETTTC
T ss_pred CccEEEEEHHHCCCCCeEEEEECCeEEEEEEecCCeEEEEeCCCCCCCCccCCCeEEcCCCCCeEEECCCCCCEEECCCC
Confidence 4699999999999999999999999999999889999999999999999 8999987643 8999999999998 99
Q ss_pred ccccCCCcccccCCccccceEEEcCEEEEeCCCC
Q 015956 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (397)
Q Consensus 290 ~~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l~~~ 323 (397)
+|+..|. .+|++|||++++|.|||++++.
T Consensus 84 ~~~~~P~-----~~l~~~~v~v~~g~V~v~~~~~ 112 (119)
T 3c0d_A 84 QCLEDEA-----HCLKTWRVTVDDNQVCYLAKEL 112 (119)
T ss_dssp BBSSCTT-----CBCCEECEEESSSEEEEECCCC
T ss_pred cCCCCCC-----ceeeEEEEEEECCEEEEEeCCc
Confidence 9999997 3799999999999999998654
No 22
>2jza_A Nitrite reductase [NAD(P)H] small subunit; ISP domain, rieske iron-sulfur protein, 3-layer beta- sandwich; NMR {Pectobacterium atrosepticum SCRI1043} SCOP: b.33.1.3
Probab=99.93 E-value=8.5e-26 Score=195.75 Aligned_cols=104 Identities=17% Similarity=0.167 Sum_probs=94.8
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCC-cEEEEeecCCCCCC-CCCCCccc---c-eeEEccccCeEEcC-CC
Q 015956 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDG-IPGCVQNTCAHRAC-PLHLGSVN---E-GRIQCPYHGWEYST-DG 289 (397)
Q Consensus 217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG-~i~A~~N~CPHRGa-~Ls~G~v~---~-~~L~CPyHGW~Fd~-dG 289 (397)
.|+.||.++||++|+++.+++.|++++|+|..+| +++|+.|+|||+|+ +|+.|.+. + ..|+||||||+||. +|
T Consensus 3 ~w~~v~~~~el~~g~~~~~~~~g~~i~v~r~~~g~~v~A~~n~CpH~g~~~L~~G~~~~~~g~~~i~CP~Hg~~Fdl~tG 82 (130)
T 2jza_A 3 QWTTVCKLDDILPGTGVCALVEQQQIAVFRPRNDEQVYAISNIDPFAQASVLSRGIVAEHQDDLWVASPLKKQHFRLYDG 82 (130)
T ss_dssp SEEEEEETTTSCTTBCCEEEETTEEEEEEBCSSSSCCEEEBCCCTTTSSGGGTSSEEEESSSSEEEECSSSCCEEETTTC
T ss_pred ceEEEEEHHHCCCCCeEEEEECCcEEEEEEECCCCEEEEEeCcCCCCCCCcCCCccCcccCCCeEEECCCCCCEEeCCCc
Confidence 5999999999999999999999999999998677 99999999999999 59999875 2 38999999999998 99
Q ss_pred ccccCCCcccccCCccccceEEEcCEEEEeCCCCCC
Q 015956 290 KCEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (397)
Q Consensus 290 ~~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l~~~~p 325 (397)
+|+..|. .+|++|||++++|+|||+++++++
T Consensus 83 ~~~~~P~-----~~L~~~~v~v~~g~V~V~~~~~~~ 113 (130)
T 2jza_A 83 FCLEDGA-----YSVAAYDTQVTNGNVQISIADSDV 113 (130)
T ss_dssp CBSSCCS-----SCCBCCCEEESSSEEEEECCCCCC
T ss_pred CCCCCCc-----CcceEEEEEEECCEEEEEeCCCCC
Confidence 9999997 379999999999999999976543
No 23
>3gce_A Ferredoxin component of carbazole 1,9A- dioxygenase; rieske ferredoxin, 2Fe-2S, electron transfer, oxidoreductase; 2.00A {Nocardioides aromaticivorans}
Probab=99.93 E-value=4.3e-26 Score=195.15 Aligned_cols=102 Identities=20% Similarity=0.318 Sum_probs=94.6
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCC--cccceeEEccccCeEEcC-CCcccc
Q 015956 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLG--SVNEGRIQCPYHGWEYST-DGKCEK 293 (397)
Q Consensus 217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G--~v~~~~L~CPyHGW~Fd~-dG~~~~ 293 (397)
.|++|+.++||++|+++.+++.|++++|+|. +|+++|+.|+|||+|++|+.| .++++.|+||||||+||+ +|+|+.
T Consensus 10 ~w~~v~~~~el~~g~~~~~~~~g~~v~v~r~-~g~~~A~~n~CpH~g~~L~~G~~~~~~~~i~CP~Hg~~Fdl~tG~~~~ 88 (121)
T 3gce_A 10 TPVRVATLDQLKPGVPTAFDVDGDEVMVVRD-GDSVYAISNLCSHAEAYLDMGVFHAESLEIECPLHVGRFDVRTGAPTA 88 (121)
T ss_dssp CCEEEEEGGGSCTTCCEEEEETTEEEEEEEE-TTEEEEEESBCSSSSCBGGGSEEETTTTEEECTTTCCEEETTTCCEEE
T ss_pred CcEEEEEHHHCCCCCEEEEEECCEEEEEEEE-CCEEEEEeCcCCCCCCCCCCCceeecCCEEEcCCCCCEEcCCCccEeC
Confidence 4999999999999999999999999999995 999999999999999999999 888899999999999995 999999
Q ss_pred CCCcccccCCccccceEEEcCEEEEeCCCC
Q 015956 294 MPSTQLRNVKIKSLPCFEQEGMIWIWPGDE 323 (397)
Q Consensus 294 vP~~~~~~~~L~~ypV~e~~G~IwV~l~~~ 323 (397)
+|.. .+|++|||++++|.|||+++..
T Consensus 89 ~P~~----~~L~~~~v~v~~g~V~v~~~~~ 114 (121)
T 3gce_A 89 LPCV----LPVRAYDVVVDGTEILVAPKEA 114 (121)
T ss_dssp TTCC----SCCCBCCEEEETTEEEECCC--
T ss_pred CCCc----CCcceEEEEEECCEEEEEECcc
Confidence 9984 4799999999999999998654
No 24
>3d89_A Rieske domain-containing protein; CAsp target, rieske ferredoxin, [2Fe-2S] cluster, protein ST initiative, PSI; 2.07A {Mus musculus}
Probab=99.92 E-value=4.5e-26 Score=203.02 Aligned_cols=111 Identities=23% Similarity=0.375 Sum_probs=95.8
Q ss_pred cccceEEeeecCCCCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccc----eeEEccccCeEEcC-C
Q 015956 214 LKNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE----GRIQCPYHGWEYST-D 288 (397)
Q Consensus 214 ~~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~----~~L~CPyHGW~Fd~-d 288 (397)
..+.|++||+++||++|+++.++++|++|+|+| .+|+++||.|+|||||++|+.|.+.+ +.|+||||||+||. +
T Consensus 13 ~~~~W~~v~~~~el~~g~~~~~~~~g~~i~v~r-~~G~v~A~~n~CpH~g~~L~~G~~~~~~g~~~i~CP~Hgw~Fdl~t 91 (157)
T 3d89_A 13 KKYTSVCVGREEDIRKSERMTAVVHDREVVIFY-HKGEYHAMDIRCYHSGGPLHLGEIEDFNGQSCIVCPWHKYKITLAT 91 (157)
T ss_dssp -CCSCEEEEEHHHHHHHSEEEEEETTEEEEEEE-ETTEEEEEESBCTTTCCBGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred CCCceEEEEEHHHCCCCCeEEEEECCEEEEEEE-ECCEEEEEeCCCCCCCCCCcCCEecCcCCCCEEECCCCCCEEecCC
Confidence 467899999999999999999999999999999 69999999999999999999998764 68999999999998 9
Q ss_pred Ccccc--C-CCcc-c------ccCCccccceEEEcCEEEEeCCCCCC
Q 015956 289 GKCEK--M-PSTQ-L------RNVKIKSLPCFEQEGMIWIWPGDEPP 325 (397)
Q Consensus 289 G~~~~--v-P~~~-~------~~~~L~~ypV~e~~G~IwV~l~~~~p 325 (397)
|+|+. + |... . ...+|++|||++++|+|||+++++++
T Consensus 92 G~~~~~~i~P~~~~~~~~~~~~~~~L~~~~v~v~~G~V~V~~~~~~~ 138 (157)
T 3d89_A 92 GEGLYQSINPKDPSAKPKWCSKGVKQRIHTVKVDNGNIYVTLSKEPF 138 (157)
T ss_dssp CEEEEEECCCC-----CEEEEEEECSCEEEEEEETTEEEEECCCCSS
T ss_pred cCEEEeccCCCccccccccccccCcceEEEEEEECCEEEEEeCCCCc
Confidence 99986 2 5321 1 12579999999999999999987643
No 25
>4aiv_A Probable nitrite reductase [NAD(P)H] small subuni; oxidoreductase, nitrite metabolism; 2.00A {Mycobacterium tuberculosis}
Probab=99.92 E-value=2.1e-25 Score=191.23 Aligned_cols=101 Identities=19% Similarity=0.203 Sum_probs=89.1
Q ss_pred cceEEeeecCCCCCCCceeEeeC-CeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccc-----eeEEccccCeEEcC-C
Q 015956 216 NFWFPVAFSTDLKDDTMVPFDCF-EEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNE-----GRIQCPYHGWEYST-D 288 (397)
Q Consensus 216 ~~W~~Va~ssdL~~G~~~~v~i~-G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~-----~~L~CPyHGW~Fd~-d 288 (397)
+.|++||.++||++|..+.+.+. |++|+|||..+|+++|++|+|||+|++|..|.+.+ ..|+||||||+||+ +
T Consensus 8 ~~W~~Vc~~~dL~~g~~~~~~~~~G~~v~l~r~~dG~v~A~~n~CpH~ga~L~~~~~~~~~~~~~~i~CP~Hg~~Fdl~t 87 (119)
T 4aiv_A 8 QVWTTACAYDHLIPGRGVGVLLDDGSQVALFRLDDGSVHAVGNVDPFSGAAVMSRGIVGDRGGRAMVQSPILKQAFALDD 87 (119)
T ss_dssp EEEEEEEEGGGSCTTCCEEEECTTSCEEEEEECTTSCEEEEESBCTTTCCBCGGGSEEEEETTEEEEECTTTCCEEETTT
T ss_pred cceeEeeEHHHcCCCCceEEEEcCCcEEEEEEcCCCeEEEEECCCCCCCCccccCceeccccCCCEEECCCCCCEEeCCC
Confidence 46999999999999998888885 79999999989999999999999999998765432 36999999999995 9
Q ss_pred CccccCCCcccccCCccccceEEE-cCEEEEeCC
Q 015956 289 GKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWIWPG 321 (397)
Q Consensus 289 G~~~~vP~~~~~~~~L~~ypV~e~-~G~IwV~l~ 321 (397)
|+|+..|.. ++++|||+++ +|+|||.+.
T Consensus 88 G~~~~~p~~-----~l~~ypv~ve~dG~V~V~~~ 116 (119)
T 4aiv_A 88 GSCLDDPRV-----SVPVYPARVTPEGRIQVARV 116 (119)
T ss_dssp CBBSSCTTC-----BCCEECEEECTTSEEEEEEE
T ss_pred CcCcCCCCC-----ccceEEEEEEeCCEEEEecC
Confidence 999999974 7999999875 899999863
No 26
>4aay_B AROB; oxidoreductase, rieske, iron sulfur, molybdopterin; HET: MGD; 2.70A {Rhizobium species}
Probab=99.90 E-value=3.2e-24 Score=195.73 Aligned_cols=143 Identities=15% Similarity=0.148 Sum_probs=88.9
Q ss_pred HHHHHHHHhhhcCCCCccccccccCCCCCCchhhhhhhcCCCCCcccccCCCCCcchhcccceEEeeecCCCCCCCceeE
Q 015956 156 AYMEALVNDRLLQDRHTSGTDQTCASPSTSKQSLDIVKGKLPRKSLNVSGPVQPYNTRLKNFWFPVAFSTDLKDDTMVPF 235 (397)
Q Consensus 156 ~~~~~~~r~r~l~~ssaat~~~asa~~~tS~e~~~~~~~~~~~~sl~v~~~~~~~~~~~~~~W~~Va~ssdL~~G~~~~v 235 (397)
..|.++.||.||+++.+|++..+.++-... ..+.+ ...+. ...+|+. ..||.++||++|+++.+
T Consensus 5 ~~~~~~~rr~fl~~~~~a~~~~~~~~~~~~---~~~~~-~~~~~------~~~~~p~------~~v~~~~dL~~g~~~~v 68 (175)
T 4aay_B 5 QNMVDIGRRQFLRGGALAAAGATAAVFGVG---APQAR-AATAA------AGVEYPA------NRLANISELTLNEPLDV 68 (175)
T ss_dssp -------------------------------------------C------CSCCCCC------EEEEEGGGCBBTBCEEE
T ss_pred hhhccccHHHHhhhhHHhhhheeEeccccc---ccccc-ccccC------cccCCCc------ceEEEHHHCCCCCEEEE
Confidence 457789999999976666654333321110 00011 11111 1124543 38999999999999999
Q ss_pred eeCC--eeEEEEEc---------CCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEcC--CCccccCCCcccccC
Q 015956 236 DCFE--EPWVIFRG---------KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYST--DGKCEKMPSTQLRNV 302 (397)
Q Consensus 236 ~i~G--~~IVV~R~---------~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~--dG~~~~vP~~~~~~~ 302 (397)
++.+ .+++|+|. .+|+++||+|+|||+|++|+.| .+++.|+||||||+||. +|+|+..|.. .
T Consensus 69 ~~~~~~~pv~v~R~g~~~~~~r~~~G~v~A~~n~CpH~G~~L~~g-~~~~~i~CP~Hg~~Fd~~~tG~~~~gPa~----~ 143 (175)
T 4aay_B 69 AYPDEDAAGVLLKLGTRVEGGVGPDGDIVGFSTICPHKGFPLSYS-ADNKTFNCPGHFSVFDPEKGGQQVWGQAT----Q 143 (175)
T ss_dssp ESSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEEGGGTTEEEECSCS----S
T ss_pred EECCCCCEEEEEEcccccccccCCCCEEEEEeCCCCCCCCCCccC-CCCCEEEcCCCCCEECCCCCceEecCCCC----C
Confidence 9974 58999996 5899999999999999999988 57789999999999997 4999999984 4
Q ss_pred CccccceEE-EcCEEEEe
Q 015956 303 KIKSLPCFE-QEGMIWIW 319 (397)
Q Consensus 303 ~L~~ypV~e-~~G~IwV~ 319 (397)
.|++||+++ .+|.||+-
T Consensus 144 ~L~~y~v~vd~dG~V~av 161 (175)
T 4aay_B 144 NLPQYVLRVADNGDIFAE 161 (175)
T ss_dssp CCCBEEEEECTTSEEEEE
T ss_pred CcCEEEEEEEcCCEEEEE
Confidence 799999999 69999964
No 27
>1rie_A Rieske iron-sulfur protein; oxidoreductase, cytochrome BC1 complex, histidine ligands, rieske iron-sulfur cluster, electron transport; 1.50A {Bos taurus} SCOP: b.33.1.1
Probab=99.86 E-value=5.8e-22 Score=171.80 Aligned_cols=97 Identities=16% Similarity=0.284 Sum_probs=89.1
Q ss_pred ceEEeeecCCCCCCCceeEeeCCeeEEEEEcC--------------------------CCcEEEEeecCCCCCCCCCCCc
Q 015956 217 FWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHLGS 270 (397)
Q Consensus 217 ~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~--------------------------dG~i~A~~N~CPHRGa~Ls~G~ 270 (397)
.|..+ ..++|++|+.+.+.+.|.+++|+|.. +|+++||.|+|||+|++|+.|.
T Consensus 5 ~~~~v-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~~~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~~C~H~g~~l~~g~ 83 (129)
T 1rie_A 5 SKIEI-KLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANA 83 (129)
T ss_dssp SSEEE-EGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETC
T ss_pred CceEe-eHHHCCCCCEEEEEECCeEEEEEECCHHHHhhhhccccceecCcccccccccCCeEEEEECccCCCCeeccccc
Confidence 46677 89999999999999999999999953 8999999999999999999998
Q ss_pred ccceeEEccccCeEEcCCCccccCCCcccccCCccccceEE-EcCEEEE
Q 015956 271 VNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 318 (397)
Q Consensus 271 v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e-~~G~IwV 318 (397)
++++.|+||||||+||.+|+++..|.. ..|+.||+++ ++|.|||
T Consensus 84 ~~~~~i~CP~Hg~~fd~~G~~~~~P~~----~~l~~~~v~v~~~~~v~v 128 (129)
T 1rie_A 84 GDFGGYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV 128 (129)
T ss_dssp TTTEEEEETTTTEEEETTCCEEESSCC----SCCCCCCEEESSSSEEEE
T ss_pred CCCCEEEcCCCCCEEcCCCCEeeCCCC----CCCCceeEEEEeCCEEEE
Confidence 888999999999999999999999884 3799999999 8999987
No 28
>1rfs_A Rieske protein; iron-sulfur protein, electron transport; 1.83A {Spinacia oleracea} SCOP: b.33.1.1 PDB: 1q90_C*
Probab=99.85 E-value=1e-21 Score=172.58 Aligned_cols=102 Identities=17% Similarity=0.264 Sum_probs=89.3
Q ss_pred ccceEEeee-cCCCCCCCceeEe-eCCeeEEEEEcCCCcE--EEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCc
Q 015956 215 KNFWFPVAF-STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGK 290 (397)
Q Consensus 215 ~~~W~~Va~-ssdL~~G~~~~v~-i~G~~IVV~R~~dG~i--~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~ 290 (397)
...|+.++. .+||++|..+.+. +.+++++++|..+|++ +|++|+|||+|++|+.|. .++.|+||||||+||.+|+
T Consensus 19 ~g~~i~v~~~~~dlp~g~~~~~~~~~g~~~ilv~~~~G~i~~~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~ 97 (139)
T 1rfs_A 19 LGNDVIAAEWLKTHAPGDRTLTQGLKGDPTYLVVESDKTLATFGINAVCTHLGCVVPFNA-AENKFICPCHGSQYNNQGR 97 (139)
T ss_dssp TSCBCBHHHHHHHSCTTCEEEEECGGGCEEEEEBCTTSSBCSEEEECBCTTTCCBCCEET-TTTEEECTTTCCEEETTCC
T ss_pred CCCEEEeehhHhhCCCCccEEEEecCCCeEEEEEeCCCcEEEEEEeCcCCCCCCCCccCC-CCCEEEcCCCCCEECCCCC
Confidence 356888887 8999988766665 5778888888889999 999999999999999877 4689999999999999999
Q ss_pred cccCCCcccccCCccccceEEEcCEEEEeCC
Q 015956 291 CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPG 321 (397)
Q Consensus 291 ~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l~ 321 (397)
|+..|.. .+|++|||++++|.|||.+.
T Consensus 98 ~~~~P~~----~~L~~~~v~v~~g~V~V~~~ 124 (139)
T 1rfs_A 98 VVRGPAP----LSLALAHCDVDDGKVVFVPW 124 (139)
T ss_dssp EEESSCC----SCCCEEEEEEETTEEEEEEC
T ss_pred CccCCCC----CCCCEEEEEEECCEEEEEeC
Confidence 9999974 47999999999999999864
No 29
>1g8k_B Arsenite oxidase; molybdopterin, [3Fe-4S] cluster, [2Fe-2S] rieske, oxidoreductase; HET: MGD; 1.64A {Alcaligenes faecalis} SCOP: b.33.1.1 PDB: 1g8j_B*
Probab=99.84 E-value=3.1e-21 Score=168.01 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=87.6
Q ss_pred eEEeeecCCCCCCCceeEeeC--CeeEEEEEcC---------CCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEc
Q 015956 218 WFPVAFSTDLKDDTMVPFDCF--EEPWVIFRGK---------DGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS 286 (397)
Q Consensus 218 W~~Va~ssdL~~G~~~~v~i~--G~~IVV~R~~---------dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd 286 (397)
|+.||.++||++|+++.+.+. +.+++|+|.. +|+++||.|.|||+|++|+.+ ..++.|+||||||+||
T Consensus 8 ~~~v~~~~dl~~g~~~~~~~~~~g~~v~v~r~~~~~~~~~~~~g~~~A~~n~CpH~g~~L~~~-~~~~~i~CP~Hg~~Fd 86 (133)
T 1g8k_B 8 ATAVSVAKNLAANEPVSFTYPDTSSPCVAVKLGAPVPGGVGPDDDIVAYSVLCTHMGCPTSYD-SSSKTFSCPCHFTEFD 86 (133)
T ss_dssp CEEEEEGGGCCBTCCEEEECSSTTSEEEEEECSSCCTTCBTTTTCEEEEECBCTTTCCBCEEE-TTTTEEECTTTCCEEE
T ss_pred ceeEEEHHHCCCCCeEEEEecCCCceEEEEEccccccccccCCCEEEEEeCcCCCCCCCCCcc-cCCCEEECCCCCCEEC
Confidence 889999999999999999985 8999999974 899999999999999999974 4568999999999999
Q ss_pred C--CCccccCCCcccccCCccccceEEE--cCEEEEe
Q 015956 287 T--DGKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIW 319 (397)
Q Consensus 287 ~--dG~~~~vP~~~~~~~~L~~ypV~e~--~G~IwV~ 319 (397)
. +|+++..|.. ..|++|+++++ +|.|||.
T Consensus 87 ~~~~G~~~~gP~~----~~L~~~~v~v~~~g~~V~v~ 119 (133)
T 1g8k_B 87 AEKAGQMICGEAT----ADLPRVLLRYDAASDALTAV 119 (133)
T ss_dssp GGGTTEEEESSCS----SCCCEEEEEEETTTTEEEEE
T ss_pred CCCCCCEEcCCCC----CCCCEEEEEEECCCCEEEEE
Confidence 7 8999999974 37999999998 6789995
No 30
>2qjy_C Ubiquinol-cytochrome C reductase iron-sulfur SUBU; cytochrome B, 8 TM helixces cytochrome C1, 1 C-TERM TM helix 1 N-TERM TM helix; HET: BGL HEM SMA LOP UQ2; 2.40A {Rhodobacter sphaeroides} PDB: 2fyn_C* 2qjk_C* 2qjp_C* 1zrt_E* 2yiu_C*
Probab=99.80 E-value=2e-20 Score=171.98 Aligned_cols=96 Identities=22% Similarity=0.265 Sum_probs=84.2
Q ss_pred eEEeeecCCCCCCCceeEeeCCeeEEEEEc----------------------------------------CCCcEEEEee
Q 015956 218 WFPVAFSTDLKDDTMVPFDCFEEPWVIFRG----------------------------------------KDGIPGCVQN 257 (397)
Q Consensus 218 W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~----------------------------------------~dG~i~A~~N 257 (397)
|+.| ..++|++|+.+.+++.|.+++|+|. .+|+++|+.|
T Consensus 49 ~v~v-~ls~l~~G~~~~v~~~g~pv~i~rrt~~~i~~~~~~~~~~l~dp~~~~~~~p~~~~~~~~~r~~~~~g~~~a~~~ 127 (187)
T 2qjy_C 49 SIFV-DVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWG 127 (187)
T ss_dssp CEEE-ECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTCCEEEEEC
T ss_pred cEEE-EHHHCCCCCeEEEEECCEEEEEEECCHHHhhhhhccchhhccCcccccccccccccccccccccCCCCeEEEEeC
Confidence 5555 8999999999999999999999992 2899999999
Q ss_pred cCCCCCCCCCCC-cccceeEEccccCeEEcCCCccccCCCcccccCCccccceEEE-cCEEEE
Q 015956 258 TCAHRACPLHLG-SVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQ-EGMIWI 318 (397)
Q Consensus 258 ~CPHRGa~Ls~G-~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e~-~G~IwV 318 (397)
+|||+||+|..+ ..+.+.|.||||||+||.+|+++..|.. ..|+.||+++. +|.|+|
T Consensus 128 ~C~H~G~~l~~~~~g~~~~~~CP~Hg~~Fd~~G~~~~gPa~----~~L~~~~~~v~~d~~i~i 186 (187)
T 2qjy_C 128 VCTHLGCSPIGGVSGDFGGWFCPCHGSHYDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL 186 (187)
T ss_dssp CCTTTSCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEEEETTEEEE
T ss_pred ccCCCCeECccCcCCCcCEEEeCCCCCEECCCCeEeCCCCC----CCCceEEEEEEeCCEEEE
Confidence 999999999973 3344799999999999999999999874 47999999986 689987
No 31
>3azc_A Cytochrome B6-F complex iron-sulfur subunit; rieske, thermosynechococcus elongatu photosynthesis, electron transport; 2.00A {Thermosynechococcus elongatus}
Probab=99.66 E-value=6.6e-21 Score=166.78 Aligned_cols=97 Identities=16% Similarity=0.303 Sum_probs=81.3
Q ss_pred eecCCCCCCCceeEe-eCCeeEEEEEcCCCc--EEEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCCCcc
Q 015956 222 AFSTDLKDDTMVPFD-CFEEPWVIFRGKDGI--PGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQ 298 (397)
Q Consensus 222 a~ssdL~~G~~~~v~-i~G~~IVV~R~~dG~--i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~ 298 (397)
...+++++|+...+. +.|.+.+++|..+|+ ++|+.|+|||+|++|+.|. .++.|+||||||+||.+|+|+..|..
T Consensus 21 ~~~~~l~~g~~~~v~~l~g~~~vlv~~~~G~~~v~A~~n~CpH~g~~L~~g~-~~~~i~CP~Hg~~Fd~tG~~~~~P~~- 98 (133)
T 3azc_A 21 EYLAKHLPGDRSLAQGIKGDPTYVIVTEDHQIANYGLNAVCTHLGCVVPWNV-SENKFICPCHGSQYDSTGKVVRGPAP- 98 (133)
Confidence 356788888877776 334455555557898 9999999999999999887 66899999999999999999999974
Q ss_pred cccCCccccceEE-EcCEEEEeCCCC
Q 015956 299 LRNVKIKSLPCFE-QEGMIWIWPGDE 323 (397)
Q Consensus 299 ~~~~~L~~ypV~e-~~G~IwV~l~~~ 323 (397)
.+|++|||++ ++|.|||.++.+
T Consensus 99 ---~~L~~ypv~v~~~g~V~V~~~~e 121 (133)
T 3azc_A 99 ---LSLALVKATVTEDDKLVFTPWTE 121 (133)
Confidence 3799999999 999999987543
No 32
>3cx5_E Cytochrome B-C1 complex subunit rieske, mitochondrial; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: b.33.1.1 f.23.12.1 PDB: 1kb9_E* 1kyo_E* 1p84_E* 2ibz_E* 1ezv_E* 3cxh_E*
Probab=99.78 E-value=7.6e-19 Score=161.35 Aligned_cols=99 Identities=17% Similarity=0.157 Sum_probs=85.5
Q ss_pred ccceEEeeecCCCCCCCceeEeeCCeeEEEEEcC--------------------------CCcEEEEeecCCCCCCCCCC
Q 015956 215 KNFWFPVAFSTDLKDDTMVPFDCFEEPWVIFRGK--------------------------DGIPGCVQNTCAHRACPLHL 268 (397)
Q Consensus 215 ~~~W~~Va~ssdL~~G~~~~v~i~G~~IVV~R~~--------------------------dG~i~A~~N~CPHRGa~Ls~ 268 (397)
...|+.| .+++|++|+.+.+.+.|++++|+|.. +|+++|+.|+|||+||.+..
T Consensus 60 a~~~v~V-~~s~l~~G~~~~v~~~g~pv~v~r~~~~~i~~~~~~~~~~l~dp~~~~~r~~~g~~~a~~~iCtHlGc~p~~ 138 (185)
T 3cx5_E 60 AMAKVEV-NLAAIPLGKNVVVKWQGKPVFIRHRTPHEIQEANSVDMSALKDPQTDADRVKDPQWLIMLGICTHLGCVPIG 138 (185)
T ss_dssp CCCCEEE-EGGGCCTTCEEEEEETTEEEEEEECCHHHHHHHHCSCGGGCSSCCCSTTTCSSTTEEEEECCCTTTSCCCEE
T ss_pred ccCcEEE-EHHHCCCCCeEEEEECCeEEEEEECCHHHhhhhhhcchhhhcCcccccccccCCeEEEEecccCCCCceecc
Confidence 3469899 69999999999999999999999963 69999999999999996443
Q ss_pred CcccceeEEccccCeEEcCCCccccCCCcccccCCccccceEEEcCEEEE
Q 015956 269 GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFEQEGMIWI 318 (397)
Q Consensus 269 G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e~~G~IwV 318 (397)
...+.+.|.||||||+||.+|+++..|.. ..|+.+|+.+.+|.|||
T Consensus 139 ~~~~~~~~~CPcHGs~FD~~G~v~~gPa~----~~L~v~p~~v~~~~I~v 184 (185)
T 3cx5_E 139 EAGDFGGWFCPCHGSHYDISGRIRKGPAP----LNLEIPAYEFDGDKVIV 184 (185)
T ss_dssp EETTTTEEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTEEEE
T ss_pred CCCCCCEEEcCCCCCEECCCCCEecCCCC----CCcceEEEEEECCEEEE
Confidence 32355799999999999999999999874 36888888889999987
No 33
>1pp9_E Ubiquinol-cytochrome C reductase iron-sulfur SUBU mitochondrial; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: b.33.1.1 f.23.12.1 PDB: 1bgy_E* 1be3_E* 1l0n_E* 1ntk_E* 1ntm_E* 1ntz_E* 1nu1_E* 1l0l_E* 1ppj_E* 1qcr_E* 1sqb_E* 1sqp_E* 1sqq_E* 1sqv_E* 1sqx_E* 2a06_E* 2fyu_E* 2ybb_E* 1bcc_E* 2bcc_E* ...
Probab=99.76 E-value=1.2e-18 Score=161.56 Aligned_cols=95 Identities=18% Similarity=0.292 Sum_probs=86.6
Q ss_pred EeeecCCCCCCCceeEeeCCeeEEEEEc--------------------------CCCcEEEEeecCCCCCCCCCCCcccc
Q 015956 220 PVAFSTDLKDDTMVPFDCFEEPWVIFRG--------------------------KDGIPGCVQNTCAHRACPLHLGSVNE 273 (397)
Q Consensus 220 ~Va~ssdL~~G~~~~v~i~G~~IVV~R~--------------------------~dG~i~A~~N~CPHRGa~Ls~G~v~~ 273 (397)
..+..++|++|+.+.+++.|.+++|+|. .+|+++|+.|+|||+||+|..|.++.
T Consensus 74 v~v~ls~l~~G~~~~v~~~G~pV~V~r~t~~~i~~~~~~~~~~l~dp~~~~~r~~~ge~~a~~~~CtH~G~~l~~~~~~~ 153 (196)
T 1pp9_E 74 IEIKLSDIPEGKNMAFKWRGKPLFVRHRTKKEIDQEAAVEVSQLRDPQHDLERVKKPEWVILIGVCTHLGCVPIANAGDF 153 (196)
T ss_dssp EEEEGGGSCTTCEEEEEETTEEEEEEECCHHHHHHHHHSCTTTCSSCCCGGGTCSSTTEEEEECCCTTTSCCCEETCSTT
T ss_pred cEEEHHHCCCCCeEEEEECCEEEEEEECCHHHHhhhhccccccccCcccccccccCCeEEEEECccCCCCeeccccCCCC
Confidence 3478999999999999999999999985 28999999999999999999988777
Q ss_pred eeEEccccCeEEcCCCccccCCCcccccCCccccceEE-EcCEEEE
Q 015956 274 GRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 318 (397)
Q Consensus 274 ~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e-~~G~IwV 318 (397)
+.|.||||||+||.+|+++..|.. ..|..||+++ .+|.|+|
T Consensus 154 ~~~~CP~HGs~FD~~G~v~~gPa~----~~L~~~p~~v~~d~~I~v 195 (196)
T 1pp9_E 154 GGYYCPCHGSHYDASGRIRKGPAP----LNLEVPSYEFTSDDMVIV 195 (196)
T ss_dssp SSEEETTTTEEECTTCCEEESSCC----SCCCCCCEEEETTTEEEE
T ss_pred CEEEeCCCCCEECCCCCCccCCCC----CCCcceeEEEEECCEEEE
Confidence 899999999999999999999884 4799999999 7999987
No 34
>2nwf_A Ubiquinol-cytochrome C reductase iron-sulfur SUBU; rieske [2Fe-2S] ISP, oxidoreductase; HET: GOL; 1.10A {Rhodobacter sphaeroides} PDB: 2nuk_A 2nve_A 2num_A 2nvg_A 2nvf_A
Probab=99.76 E-value=1.4e-18 Score=153.28 Aligned_cols=93 Identities=19% Similarity=0.237 Sum_probs=83.7
Q ss_pred eecCCCCCCCceeEeeCCeeEEEEEc----------------------------------------CCCcEEEEeecCCC
Q 015956 222 AFSTDLKDDTMVPFDCFEEPWVIFRG----------------------------------------KDGIPGCVQNTCAH 261 (397)
Q Consensus 222 a~ssdL~~G~~~~v~i~G~~IVV~R~----------------------------------------~dG~i~A~~N~CPH 261 (397)
..+++|++|+.++++..|.|+.|.|. .+|+++|+.|+|||
T Consensus 6 vd~s~l~~g~~~~v~wrgkPv~i~~rt~~~~~~~~~~~~~~l~Dp~~~~~~~p~~~y~~~~~R~~~~~g~~~a~~~~C~H 85 (141)
T 2nwf_A 6 VDVSSVEPGVQLTVKFLGKPIFIRRRTEADIELGRSVQLGQLVDTNARNANIDAGAEATDQNRTLDEAGEWLVMWGVCTH 85 (141)
T ss_dssp EECTTCCTTEEEEEEETTEEEEEEECCHHHHHHHHTCCGGGCSCCBCCBTTSCTTCBCCGGGGSSSTTSCEEEEECCCTT
T ss_pred EecccCCCCCEEEEEECCEEEEEEECCHHHHhhhhcccccccCCcccccccCCccccccchhccccCCCcEEEEeCcCCC
Confidence 46889999999999999999999984 17899999999999
Q ss_pred CCCCCCC-CcccceeEEccccCeEEcCCCccccCCCcccccCCccccceEE-EcCEEEE
Q 015956 262 RACPLHL-GSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLRNVKIKSLPCFE-QEGMIWI 318 (397)
Q Consensus 262 RGa~Ls~-G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~~~~L~~ypV~e-~~G~IwV 318 (397)
+||+|+. +.++++.|.||||||+||.+|+++..|+. ..|..||+++ .+|.|+|
T Consensus 86 ~G~~l~~~~~~~~~~~~CP~Hgs~Fd~~G~~~~gPa~----~~L~~~pv~v~~d~~i~v 140 (141)
T 2nwf_A 86 LGCVPIGGVSGDFGGWFCPCHGSHWDSAGRIRKGPAP----ENLPIPLAKFIDETTIQL 140 (141)
T ss_dssp TCCCCEEEEETTTTEEEETTTTEEECTTSCEEESSCC----SCCCBCSEEESSSSEEEE
T ss_pred CCeEccccCccCCCEEEcCCCCCEECCCCCCccCCCC----CCCCceeEEEEECCEEEE
Confidence 9999998 66666899999999999999999999874 3799999999 7999987
No 35
>1nyk_A Rieske iron-sulfur protein; beta barrel, iron sulfur cluster, electron transport; 1.31A {Thermus thermophilus} SCOP: b.33.1.1 PDB: 3fou_A
Probab=99.75 E-value=2.5e-18 Score=155.28 Aligned_cols=98 Identities=20% Similarity=0.288 Sum_probs=81.2
Q ss_pred ecCCCCCCCceeEeeCCee-------------EEEEEc-------------CCCcEEEEeecCCCCCCCCCCCcccceeE
Q 015956 223 FSTDLKDDTMVPFDCFEEP-------------WVIFRG-------------KDGIPGCVQNTCAHRACPLHLGSVNEGRI 276 (397)
Q Consensus 223 ~ssdL~~G~~~~v~i~G~~-------------IVV~R~-------------~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L 276 (397)
..++|++|+.+.+.+-|.+ +++.|- .+| ++||.|+|||+||+|+.|.++++.|
T Consensus 26 ~~sdl~~G~~~~~~~~g~p~~~~~r~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-v~A~~~~CpH~G~~L~~g~~~~~~i 104 (165)
T 1nyk_A 26 RLEELKPGDPFVLAYPMDPKTKVVKSGEAKNTLLVARFDPEELAPEVAQHAAEG-VVAYSAVCTHLGCIVSQWVADEEAA 104 (165)
T ss_dssp BGGGCCTTSCCEEEEEECTTTCCBCTTSGGGCEEEEECCGGGSCHHHHTTCBTT-EEEEECBCTTTCCBCCEEEGGGTEE
T ss_pred cHHHCCCCCEEEEEeCCCcchhhccCcchhcchheeccChhhcCccccccccCC-EEEEEeecCCCCeEcccccCCCCEE
Confidence 6788888887777654433 556664 355 9999999999999999888888899
Q ss_pred EccccCeEEcC-CCc-cccCCCcccccCCccccceEEEcCEEEEeCCCCCC
Q 015956 277 QCPYHGWEYST-DGK-CEKMPSTQLRNVKIKSLPCFEQEGMIWIWPGDEPP 325 (397)
Q Consensus 277 ~CPyHGW~Fd~-dG~-~~~vP~~~~~~~~L~~ypV~e~~G~IwV~l~~~~p 325 (397)
.||||||+||. +|. |+..|+. ..|..||+++++|.|||+++...|
T Consensus 105 ~CP~Hgs~Fd~~tG~~~~~gPa~----~~L~~~~v~v~~g~V~v~~~~~~~ 151 (165)
T 1nyk_A 105 LCPCHGGVYDLRHGAQVIAGPPP----RPVPQLPVRVEDGVLVAAGEFLGP 151 (165)
T ss_dssp ECTTTCCEEEGGGTTEEEESSCS----SCCCEECEEEETTEEEECSSCSSC
T ss_pred ECCCCCCEEcCCCCCeeecCCCC----CCCcEEEEEEECCEEEEEecCccc
Confidence 99999999997 486 9999874 479999999999999999876544
No 36
>1vf5_D Rieske iron-sulfur protein; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: b.33.1.1 f.23.12.1 PDB: 2d2c_D* 2e74_D* 2e75_D* 2e76_D* 2zt9_D*
Probab=99.72 E-value=7.6e-19 Score=160.07 Aligned_cols=92 Identities=18% Similarity=0.325 Sum_probs=82.3
Q ss_pred cCCCCCCCceeEe-eCCeeEEEEEcCCCcE--EEEeecCCCCCCCCCCCcccceeEEccccCeEEcCCCccccCCCcccc
Q 015956 224 STDLKDDTMVPFD-CFEEPWVIFRGKDGIP--GCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYSTDGKCEKMPSTQLR 300 (397)
Q Consensus 224 ssdL~~G~~~~v~-i~G~~IVV~R~~dG~i--~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd~dG~~~~vP~~~~~ 300 (397)
.++|++|+...+. +.|++++++|+.+|++ +|+.|+|||+||+|..+. .++.|.||||||+||.+|+++..|..
T Consensus 70 ~~~l~~g~~~~~~~~~g~~~~lv~~~~g~~~~~a~~~~CtH~G~~l~~~~-~~~~~~CP~Hgs~Fd~~G~~~~gPa~--- 145 (179)
T 1vf5_D 70 LESHNAGDRVLVQGLKGDPTYIVVESKEAIRDYGINAVCTHLGCVVPWNA-AENKFKCPCHGSQYDETGRVIRGPAP--- 145 (179)
T ss_dssp HHCCCTTCCCEESCSSSSCEECCBCTTCCBCSCCCBCBCTTTSCBCCBCS-SSSSEECTTTCCEECSSSCCCSSSCC---
T ss_pred ccccCCCceEEEeccCCCeEEEEEECCCcEEEEEEeCccCCCCCCCcccC-CCCEEECCCCCCEECCCCcEecCCCC---
Confidence 5788999887776 7788999888899998 999999999999999887 45899999999999999999999974
Q ss_pred cCCccccceEEEcCEEEEeC
Q 015956 301 NVKIKSLPCFEQEGMIWIWP 320 (397)
Q Consensus 301 ~~~L~~ypV~e~~G~IwV~l 320 (397)
..|+.||+.+++|.|||.+
T Consensus 146 -~~L~~~~v~v~~g~v~v~~ 164 (179)
T 1vf5_D 146 -LSLALCHATVQDDNIVLTP 164 (179)
T ss_dssp -SCCBCCCCCCSSSSCCCCC
T ss_pred -CCCCeEEEEEECCEEEEEe
Confidence 4799999999999999975
No 37
>1jm1_A Rieske iron-sulfur protein SOXF; electron transport, respiratory chain, oxidoreductase; 1.11A {Sulfolobus acidocaldarius} SCOP: b.33.1.1
Probab=99.64 E-value=1.7e-17 Score=154.62 Aligned_cols=85 Identities=18% Similarity=0.284 Sum_probs=72.4
Q ss_pred eeEeeCCeeEEEEEcC------------CCcEEEEeecCCCCCCCCCCCcc-----------cceeEEccccCeEEcCC-
Q 015956 233 VPFDCFEEPWVIFRGK------------DGIPGCVQNTCAHRACPLHLGSV-----------NEGRIQCPYHGWEYSTD- 288 (397)
Q Consensus 233 ~~v~i~G~~IVV~R~~------------dG~i~A~~N~CPHRGa~Ls~G~v-----------~~~~L~CPyHGW~Fd~d- 288 (397)
+.+++.+..++++|.. +|+++|+.|+|||+||+|+.|.+ .++.|.||||||+||.+
T Consensus 56 ~~v~v~~~~i~v~r~~~~~~r~~ggvg~~g~i~A~~n~CpH~G~~L~~g~~~p~~~~~~~~~~~~~i~CP~Hgs~FDl~t 135 (204)
T 1jm1_A 56 QITEIPNPYYGKYAGPLGQIQTIKGVGPNGTIFAFSDVCVHLGCQLPAQVIVSSESDPGLYAKGADLHCPCHGSIYALKD 135 (204)
T ss_dssp CCCEEECTTTTSSCTTGGGCCEEECBTTTTCEEEEESBCTTTCCBCCTTEEESSTTSSEEETTTTEEECTTTCCEEEGGG
T ss_pred ceEeeCCceEEEEecCccccccccccccCCEEEEEeCcCCCCCcCccccccccccccccccCCCCEEECCCCCCEEeCCC
Confidence 5677788888888865 79999999999999999998853 56799999999999986
Q ss_pred -CccccCCCcccccCCccccceEEE--cCEEEEeCC
Q 015956 289 -GKCEKMPSTQLRNVKIKSLPCFEQ--EGMIWIWPG 321 (397)
Q Consensus 289 -G~~~~vP~~~~~~~~L~~ypV~e~--~G~IwV~l~ 321 (397)
|+++..|+. ..|+.|++.++ +|.||+...
T Consensus 136 GG~v~~gPa~----~~L~~~~v~v~~~~g~v~v~g~ 167 (204)
T 1jm1_A 136 GGVVVSGPAP----RPLPIVILDYDSSTGDIYAVGT 167 (204)
T ss_dssp TSEEEESSCC----SCCCBEEEEECTTTCEEEEEEE
T ss_pred CCeEecCCCC----CCCCeEeeEEEecCCEEEEEeC
Confidence 699998874 36899999987 899999753
No 38
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=74.78 E-value=8.4 Score=35.28 Aligned_cols=84 Identities=19% Similarity=0.238 Sum_probs=47.6
Q ss_pred ceeehhhHHHHhh-------hcccccccccch--------hhH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHH
Q 015956 70 KFLDVNQALEVAR-------YDIQYCDWRARQ--------DVL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQED 133 (397)
Q Consensus 70 ~~~~~~~~~~~~~-------~~~~~~~~~~~~--------d~~-~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~ 133 (397)
+|-.+|+|.++++ ||.+.-.+.... +.| .+|++++.+.++=+. ..+..|++++.+.+++
T Consensus 92 ~f~~In~AY~vLsdp~~R~~Yd~~l~G~~~~~e~~~~~d~~fLme~me~~E~le~~~~~-----~~l~~l~~~~~~~~~~ 166 (207)
T 3bvo_A 92 HSTLVNDAYKTLLAPLSRGLYLLKLHGIEIPERTDYEMDRQFLIEIMEINEKLAEAESE-----AAMKEIESIVKAKQKE 166 (207)
T ss_dssp HHHHHHHHHHHHHSHHHHHHHHHHHTTCCCCSSCSSSSCHHHHHHHHHHHHHHHHCCSH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHhcCCCcccccccCCCHHHHHHHHHHHHHHHHccCH-----HHHHHHHHHHHHHHHH
Confidence 6789999999985 444332232222 355 499999999986543 2256666666665555
Q ss_pred HH----HHHHHhhhhhhhHHHHhhhhHHHHH
Q 015956 134 LA----QAHRQVHISEARVATALDKLAYMEA 160 (397)
Q Consensus 134 ~~----~ah~~~h~~~~Rv~~ald~~~~~~~ 160 (397)
+. +|=.+ .+- ......+.|++++.+
T Consensus 167 ~~~~l~~~~~~-~d~-~~A~~~v~kL~y~~k 195 (207)
T 3bvo_A 167 FTDNVSSAFEQ-DDF-EEAKEILTKMRYFSN 195 (207)
T ss_dssp HHHHHHHHHHT-TCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCH-HHHHHHHHHHHHHHH
Confidence 43 33221 111 334455566666543
No 39
>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1
Probab=74.35 E-value=7.4 Score=34.45 Aligned_cols=88 Identities=16% Similarity=0.239 Sum_probs=48.1
Q ss_pred CceeehhhHHHHhh-------hcccccccccch--------hhH-HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 015956 69 GKFLDVNQALEVAR-------YDIQYCDWRARQ--------DVL-TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (397)
Q Consensus 69 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~--------d~~-~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~ 132 (397)
-+|--+|+|.++++ ||...--..... +.| .+|++++++.|+-+. .+...+..|++++...++
T Consensus 49 ~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~~e~~~~~d~~fLme~me~rE~lee~~~~--~d~~~l~~l~~~~~~~~~ 126 (171)
T 1fpo_A 49 QQSATINQAWQTLRHPLMRAEYLLSLHGFDLASEQHTVRDTAFLMEQLELREELDEIEQA--KDEARLESFIKRVKKMFD 126 (171)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHTTTCCTTCSSSCCSCHHHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHhcCCCccccccccCCHHHHHHHHHHHHHHHHhhcc--CCHHHHHHHHHHHHHHHH
Confidence 37899999999986 444332222222 245 499999999987542 222335556655555443
Q ss_pred HH----HHHHHHhhhhhhhHHHHhhhhHHHHH
Q 015956 133 DL----AQAHRQVHISEARVATALDKLAYMEA 160 (397)
Q Consensus 133 ~~----~~ah~~~h~~~~Rv~~ald~~~~~~~ 160 (397)
++ .+|=..-+. ......+.|++++.+
T Consensus 127 ~~~~~l~~~~~~~~~--~~A~~~~~kl~y~~k 156 (171)
T 1fpo_A 127 TRHQLMVEQLDNETW--DAAADTCRKLRFLDK 156 (171)
T ss_dssp HHHHHHHHHHHTTCH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCcH--HHHHHHHHHHHHHHH
Confidence 33 333322221 233345556666543
No 40
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=67.94 E-value=12 Score=29.21 Aligned_cols=57 Identities=32% Similarity=0.468 Sum_probs=48.7
Q ss_pred cccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 015956 88 CDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (397)
Q Consensus 88 ~~~~~~~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ 150 (397)
-||-.|.=+-.|-.-=.|+++-||..+- .-+..|+.|.+.|.+.-.++-+.|++|+.
T Consensus 14 ~DW~nRe~ie~is~~I~~~v~FLN~F~~------sce~KLa~ln~kL~~lE~~L~iLEAklsS 70 (73)
T 3pp5_A 14 KDWEQREFIEDMSINIQKIVEFLNKFEL------STRNKLSDLNEKLTILDRQVDYLEATFKT 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4899998877777777899999998753 46788999999999999999999999873
No 41
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A
Probab=66.66 E-value=27 Score=31.13 Aligned_cols=44 Identities=16% Similarity=0.277 Sum_probs=30.1
Q ss_pred cCCceeehhhHHHHhh-------hcccc-cccccch------------h-hHHHHHHHHHHHHhh
Q 015956 67 CKGKFLDVNQALEVAR-------YDIQY-CDWRARQ------------D-VLTIMLLHEKVVEVL 110 (397)
Q Consensus 67 ~~~~~~~~~~~~~~~~-------~~~~~-~~~~~~~------------d-~~~~~~~~~~v~~~l 110 (397)
..-+|.-+|+|.+++. ||.+- -.....+ + |..+|++|+++.|.=
T Consensus 54 a~~~f~~i~~AY~vL~dp~~R~~Yd~~l~~g~~~~~e~~~~~~~~~d~~fLme~me~rE~leea~ 118 (181)
T 3uo3_A 54 GSEQSSTLNQAYHTLKDPLRRSQYMLKLLRNIDLTQEQTSNEVTTSDPQLLLKVLDIHDELSQMD 118 (181)
T ss_dssp CSSGGGSHHHHHHHHHSHHHHHHHHHHHHHCCCTTSHHHHHHHHHTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHcChHHHHHHHHHHHhCCCccccccccccccCCHHHHHHHHHHHHHHHhcc
Confidence 6778999999999975 55543 2222111 2 338899999999863
No 42
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=60.79 E-value=11 Score=29.51 Aligned_cols=57 Identities=30% Similarity=0.463 Sum_probs=48.5
Q ss_pred cccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 015956 88 CDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (397)
Q Consensus 88 ~~~~~~~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ 150 (397)
-||-.|+=+-.|-..=.++++-||..+- .-+..|+.|.+.|.+.-.++-+.|+||+.
T Consensus 14 ~DW~nRe~ie~in~~I~~~v~FLN~F~~------sce~KLa~ln~KL~~LEr~L~iLEAklss 70 (75)
T 3p8c_E 14 QDWANREYIEIITSSIKKIADFLNSFDM------SCRSRLATLNEKLTALERRIEYIEARVTK 70 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5899999887777777899999998753 45788999999999999999999999863
No 43
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=59.67 E-value=3.7 Score=29.56 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=29.2
Q ss_pred CCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEE
Q 015956 248 KDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEY 285 (397)
Q Consensus 248 ~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~F 285 (397)
.+|+|.-....||..|..+.... +.+++.|+=.|++|
T Consensus 11 ~~~kv~~~~k~CP~CG~~~fm~~-~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 11 KDGKVIRKNKFCPRCGPGVFMAD-HGDRWACGKCGYTE 47 (50)
T ss_dssp CSSCEECSSEECSSSCSSCEEEE-CSSEEECSSSCCEE
T ss_pred ECCEEEEecccCCCCCCceEEec-CCCeEECCCCCCEE
Confidence 36788888899999998765543 35799999888876
No 44
>3hho_A CO-chaperone protein HSCB homolog; structural genomics, IDP01304, center for structural genomics of infectious diseases, CSGI; 2.15A {Vibrio cholerae}
Probab=53.12 E-value=44 Score=29.39 Aligned_cols=88 Identities=17% Similarity=0.235 Sum_probs=46.6
Q ss_pred CceeehhhHHHHhh-------hcccccccccch------h---hHHHHHHHHHHHHhhChhhhh-ccchhhHHHHHHHHH
Q 015956 69 GKFLDVNQALEVAR-------YDIQYCDWRARQ------D---VLTIMLLHEKVVEVLNPLARD-YKSIGTMKKELAELQ 131 (397)
Q Consensus 69 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~------d---~~~~~~~~~~v~~~l~~~~~~-~~~~~~~~~~l~~lq 131 (397)
-+|.-+|+|.++++ ||.+-....... | +..+|++++++.++-+. .+ ..++..|++++...+
T Consensus 52 ~~f~~In~AY~vL~dp~~R~~Yd~~l~g~~~~~e~~~~~d~~fLme~me~rE~le~~~~~--~d~~~~l~~l~~~~~~~~ 129 (174)
T 3hho_A 52 QQAAQINDAYQTLKDPLRRAEYLLSLQGIEMNAEQQTLQDPMFLMEQMELREELESVTAC--ADPEAALVAFDTKVTAMQ 129 (174)
T ss_dssp HHHHHHHHHHHHHHSHHHHHHHHHHHTTCCCC----CCCCHHHHHHHHHHHHHHHHHTSS--SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcChHHHHHHHHHccCCCcccccCCCCCHHHHHHHHHHHHHHHHHhhc--cchHHHHHHHHHHHHHHH
Confidence 57889999999976 444333333322 2 33889999999987432 11 122444444444443
Q ss_pred ----HHHHHHHHHhhhhhhhHHHHhhhhHHHHH
Q 015956 132 ----EDLAQAHRQVHISEARVATALDKLAYMEA 160 (397)
Q Consensus 132 ----~~~~~ah~~~h~~~~Rv~~ald~~~~~~~ 160 (397)
+++.+|=.+-... .....+.||+++.+
T Consensus 130 ~~~~~~l~~~~~~~d~~--~A~~~~~kL~f~~k 160 (174)
T 3hho_A 130 RHYLAQLQGQLAQSEWL--AAADQIRKLKFIAK 160 (174)
T ss_dssp HHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHH--HHHHHHHHHHHHHH
Confidence 3344443322111 23344666666644
No 45
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=41.96 E-value=73 Score=25.22 Aligned_cols=56 Identities=16% Similarity=0.199 Sum_probs=35.3
Q ss_pred HHHHHHHHHhhChhhhhccchhhHHHHHHH--------------HHHHHHHHHHHhhhhhhhHHHHhhhh
Q 015956 100 MLLHEKVVEVLNPLARDYKSIGTMKKELAE--------------LQEDLAQAHRQVHISEARVATALDKL 155 (397)
Q Consensus 100 ~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~--------------lq~~~~~ah~~~h~~~~Rv~~ald~~ 155 (397)
..|..||-..+..++-=++=|..||.+-.. |++|..+-.++-+.-+.|+..-|+|+
T Consensus 9 eqLE~KIq~avdtI~lLqmEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LLgk~ 78 (81)
T 2jee_A 9 EKLEAKVQQAIDTITLLQMEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALLGRM 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 356677777777666655556666666655 44455555555666667777766663
No 46
>3caz_A BAR protein; thermo-acidophilic RED ALGA, protein structure initiative, PSI, center for eukaryotic structural genomics, signaling protein; 3.34A {Galdieria sulphuraria}
Probab=40.62 E-value=7.6 Score=35.88 Aligned_cols=72 Identities=26% Similarity=0.393 Sum_probs=44.4
Q ss_pred eeeeeeecCCCCCCCCcCCceeehhhHHHH--hhhcccccccccchhhHHHHHHHHHHHHhhChhhhhccchhhHHHHHH
Q 015956 51 WSTLFDVEDPRSKVPQCKGKFLDVNQALEV--ARYDIQYCDWRARQDVLTIMLLHEKVVEVLNPLARDYKSIGTMKKELA 128 (397)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~ 128 (397)
-..+|.-||||- .|-||=.- --||+.|+|-. .--+.+...|..+-.-+.-|.|||+||+
T Consensus 62 lnqifnkedpry----------evvqagasaahdfdvryldih---------khgreiarllekiqkyfQ~IEtlK~ql~ 122 (294)
T 3caz_A 62 LNQIFNKEDPRY----------EVVQAGASAAHDFDVRYLDIH---------KHGREIARLLEKIQKYRQEIEEIKKEYK 122 (294)
T ss_dssp HTSSCCSCCTTH----------HHHHHHHHHHHHHHHHHHHHH---------HHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccCcch----------HHHHcccccccccchhhhhHH---------hhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456899999985 34454333 35788888732 2223344444455555667999999999
Q ss_pred HHHHH-HHHHHHHh
Q 015956 129 ELQED-LAQAHRQV 141 (397)
Q Consensus 129 ~lq~~-~~~ah~~~ 141 (397)
+.|+- |-=-||++
T Consensus 123 nf~e~RLiYDHYKl 136 (294)
T 3caz_A 123 ETDKYRERYDHYKV 136 (294)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH
Confidence 98862 22235544
No 47
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=38.42 E-value=35 Score=24.75 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=19.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARV 148 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv 148 (397)
+..||.|+++||.++..-..+.-...+|+
T Consensus 21 ~eaLk~E~~eLk~k~~~L~~~~~el~~~l 49 (53)
T 2yy0_A 21 IELLRLELAEMKEKYEAIVEENKKLKAKL 49 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55777777777777776666665555544
No 48
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=37.68 E-value=55 Score=25.79 Aligned_cols=38 Identities=13% Similarity=0.266 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHH----------HHHHHHHhhhhhhhHHHHhhhhHH
Q 015956 120 IGTMKKELAELQED----------LAQAHRQVHISEARVATALDKLAY 157 (397)
Q Consensus 120 ~~~~~~~l~~lq~~----------~~~ah~~~h~~~~Rv~~ald~~~~ 157 (397)
+..|+.+++.|+.. +..++.+++..-..+.++|+.++.
T Consensus 34 l~~L~~~v~~L~~~g~W~G~A~~ay~~~~~~W~~~a~~l~~~L~~i~~ 81 (103)
T 4i0x_B 34 LDQLESRAQKLVQSGQWAGAAAAAYSQAHKEWMDAARELVEGLSQMEE 81 (103)
T ss_dssp HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCeechHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777777766 888999999999999999998776
No 49
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=37.68 E-value=30 Score=23.58 Aligned_cols=29 Identities=21% Similarity=0.351 Sum_probs=20.6
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHhh
Q 015956 114 ARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (397)
Q Consensus 114 ~~~~~~~~~~~~~l~~lq~~~~~ah~~~h 142 (397)
..|.++.+..|+|+..|+.+|..-.+.-|
T Consensus 4 ~ee~mTLeEtkeQi~~l~~kl~~LkeEKH 32 (38)
T 2l5g_A 4 MEERMSLEETKEQILKLEEKLLALQEEKH 32 (38)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667777888888888877776665555
No 50
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=37.14 E-value=19 Score=31.86 Aligned_cols=56 Identities=11% Similarity=0.171 Sum_probs=40.9
Q ss_pred CCCCCceeEeeCCeeEEEEEcCCCcEEEEeecCCCCCCCCCCCcccceeEEccccCeEEc
Q 015956 227 LKDDTMVPFDCFEEPWVIFRGKDGIPGCVQNTCAHRACPLHLGSVNEGRIQCPYHGWEYS 286 (397)
Q Consensus 227 L~~G~~~~v~i~G~~IVV~R~~dG~i~A~~N~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd 286 (397)
+.+||.+..++.+..+.+-. .+.++-.+.+.|+-+|.+|..- . ..+.||-.|+.-.
T Consensus 112 ~~~GD~V~akVi~~~i~LS~-k~~~lGvv~a~~~~~g~~m~~~--~-~~~~cp~~g~~e~ 167 (179)
T 3m7n_A 112 VGYLDILKARVIGDNLRLST-KEEEMGVLRALCSNCKTEMVRE--G-DILKCPECGRVEK 167 (179)
T ss_dssp CCTTCEEEEEEEETTTEEEC-CSTTCEEEECBCTTTCCBCEEC--S-SSEECSSSCCEEC
T ss_pred CCCCCEEEEEEECCeEEEEE-ecCCCCEEEecccccCCceEEC--C-CEEECCCCCCEEE
Confidence 45688777776554555554 4667888899999888888642 3 7899999998755
No 51
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=36.56 E-value=10 Score=26.51 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=22.0
Q ss_pred cCCCCCC-CCCCCcccceeEEccccCeEEcC
Q 015956 258 TCAHRAC-PLHLGSVNEGRIQCPYHGWEYST 287 (397)
Q Consensus 258 ~CPHRGa-~Ls~G~v~~~~L~CPyHGW~Fd~ 287 (397)
.||..|. +|.... ..+.++|+..|..|..
T Consensus 7 ~CP~C~~~~l~~d~-~~gelvC~~CG~v~~e 36 (50)
T 1pft_A 7 VCPACESAELIYDP-ERGEIVCAKCGYVIEE 36 (50)
T ss_dssp SCTTTSCCCEEEET-TTTEEEESSSCCBCCC
T ss_pred eCcCCCCcceEEcC-CCCeEECcccCCcccc
Confidence 6999887 666543 3467999999999874
No 52
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=35.80 E-value=94 Score=24.11 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhChhhhhccc--------hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Q 015956 100 MLLHEKVVEVLNPLARDYKS--------IGTMKKELAELQEDLAQAHRQVHISEARVATALDK 154 (397)
Q Consensus 100 ~~~~~~v~~~l~~~~~~~~~--------~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~ 154 (397)
+..|...++.+|..+..... ...++++|..|++.+..-..++..-..++.+||..
T Consensus 52 i~~~~~~v~~v~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~L~~aL~~ 114 (118)
T 3uul_A 52 LSAHQSSVGSVLQAGNQLMTQGTLSDEEEFEIQEQMTLLNARWEALRVESMERQSRLHDALME 114 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36677777777777766532 23477888888888887777777777777777765
No 53
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=34.83 E-value=72 Score=29.04 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=39.8
Q ss_pred HHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHH
Q 015956 102 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYMEALV 162 (397)
Q Consensus 102 ~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~~~~~ 162 (397)
+|.-|-.+.++..+=..-+.+...|+..||++++.+..|.-..+.+.+.++..+--.++|.
T Consensus 18 ad~LV~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~~~~~~~e~i~i~~DL~ 78 (190)
T 4emc_A 18 ADLLVANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKTQTSQQAENSEVIKDLY 78 (190)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhhhHHHHHH
Confidence 4444444555444444445677888888888888888888878777777776655544443
No 54
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=34.42 E-value=1.5e+02 Score=23.94 Aligned_cols=58 Identities=24% Similarity=0.311 Sum_probs=36.5
Q ss_pred HHHHhhChhhhhccchhhHHH-------HHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHH
Q 015956 105 KVVEVLNPLARDYKSIGTMKK-------ELAELQEDLAQAHRQVHISEARVATALDKLAYMEALVN 163 (397)
Q Consensus 105 ~v~~~l~~~~~~~~~~~~~~~-------~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~~~~~r 163 (397)
|..-.=|.|-.|..|...|-| -|+.|..|-+.-..++...++|+.++|..+-. |++.|
T Consensus 5 ~La~le~sLe~EK~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~Lk~l~~-EklAk 69 (101)
T 1d7m_A 5 RLAGLENSLESEKVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDETLKNLEL-EKLAR 69 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccH-HHHHH
Confidence 333334455566666655544 45666666667777888999999998876543 44443
No 55
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=34.18 E-value=82 Score=29.05 Aligned_cols=39 Identities=10% Similarity=0.174 Sum_probs=34.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+..|++++++|+++|.+++.......+|........+.+
T Consensus 68 l~~l~~e~~el~d~~lR~~AEfeN~RkR~~rE~e~~~~~ 106 (213)
T 4ani_A 68 IAELEAKLSEMEHRYLRLYADFENFRRRTRQEMEAAEKY 106 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999888887776
No 56
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=33.76 E-value=34 Score=24.65 Aligned_cols=32 Identities=28% Similarity=0.344 Sum_probs=26.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Q 015956 117 YKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDK 154 (397)
Q Consensus 117 ~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~ 154 (397)
-+|+..|+.+|++|+.=+.+| .+.||.+.|+.
T Consensus 3 ~m~~eeL~~DL~El~~Ll~~A------kR~rVk~~L~~ 34 (50)
T 2a26_A 3 HMASEELQKDLEEVKVLLEKA------TRKRVRDALTA 34 (50)
T ss_dssp CCCHHHHHHHHHHHHHHHHHC------CSHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHh------ccHHHHHHHHH
Confidence 478899999999999988887 45688877764
No 57
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=33.21 E-value=16 Score=24.71 Aligned_cols=23 Identities=22% Similarity=0.395 Sum_probs=15.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHh
Q 015956 119 SIGTMKKELAELQEDLAQAHRQV 141 (397)
Q Consensus 119 ~~~~~~~~l~~lq~~~~~ah~~~ 141 (397)
++..||+.+..||.|+-+|..++
T Consensus 5 ~i~avKkKiq~lq~q~d~aee~~ 27 (37)
T 3azd_A 5 SLEAVRRKIRSLQEQNYHLENEV 27 (37)
T ss_dssp -CHHHHHHHHHHHHHTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888887776665554
No 58
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=33.09 E-value=25 Score=25.68 Aligned_cols=33 Identities=21% Similarity=0.431 Sum_probs=18.5
Q ss_pred HHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHH
Q 015956 105 KVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQ 140 (397)
Q Consensus 105 ~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~ 140 (397)
.|-+.|..++.++. +|.+|..+|++++.+...+
T Consensus 24 EVD~FLd~v~~~~~---~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 24 EVNEFLAQVRKDYE---IVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 45555666665543 6677777777777666554
No 59
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=31.50 E-value=1e+02 Score=30.51 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=39.3
Q ss_pred HHHHHHHHhhChhhhhc---cchhhHHHHHHHHHHHHHHHHHHhh-----------hhhhhHHHHhhhhHHHH
Q 015956 101 LLHEKVVEVLNPLARDY---KSIGTMKKELAELQEDLAQAHRQVH-----------ISEARVATALDKLAYME 159 (397)
Q Consensus 101 ~~~~~v~~~l~~~~~~~---~~~~~~~~~l~~lq~~~~~ah~~~h-----------~~~~Rv~~ald~~~~~~ 159 (397)
.+.+++.+.|+....+. .-..-|++||.++|+-++++..|-. ..++.|++++.|+.++|
T Consensus 377 ~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (471)
T 3mq9_A 377 DAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQAATANHTVMALMASLDAEKAQGQKKVEELE 449 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555554443331 2234589999999999998887743 35778888888888876
No 60
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=30.93 E-value=1.5e+02 Score=22.87 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhChhhhhccc--------hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Q 015956 100 MLLHEKVVEVLNPLARDYKS--------IGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 155 (397)
Q Consensus 100 ~~~~~~v~~~l~~~~~~~~~--------~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~ 155 (397)
+..|...++.++..+.+..+ ...++++|..|++.+..-...+..-..++..||...
T Consensus 52 i~~~~~~v~~~~~~g~~L~~~~~~~~~~~~~i~~~l~~l~~rw~~L~~~~~~R~~~Le~aL~~~ 115 (119)
T 3uun_A 52 LTAHQGRVGNILQLGSKLIGTGKLSEDEETEVQEQMNLLNSRWECLRVASMEKQSNLHRVLMDL 115 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777766532 235788888888888877777777777777777653
No 61
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=30.59 E-value=60 Score=20.07 Aligned_cols=21 Identities=33% Similarity=0.548 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHh
Q 015956 121 GTMKKELAELQEDLAQAHRQV 141 (397)
Q Consensus 121 ~~~~~~l~~lq~~~~~ah~~~ 141 (397)
..|-|||..|||.|.+-..++
T Consensus 4 delykeledlqerlrklrkkl 24 (27)
T 3twe_A 4 DELYKELEDLQERLRKLRKKL 24 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 357789999999887766554
No 62
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=30.02 E-value=61 Score=23.32 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=27.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhh
Q 015956 119 SIGTMKKELAELQEDLAQAHRQVHISEARVATALDKL 155 (397)
Q Consensus 119 ~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~ 155 (397)
||..|.|++..|.++|..+..+--.....+.++|..+
T Consensus 13 sV~KLek~ID~LEdeL~~eKek~~~i~~eLD~tl~el 49 (52)
T 2z5i_A 13 EVARLKKLVDDLEDELYAQKLKYKAISEELDHALNDM 49 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 5788899999999999888777666666666665443
No 63
>2rjz_A PILO protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Pseudomonas aeruginosa}
Probab=29.34 E-value=86 Score=26.84 Aligned_cols=43 Identities=19% Similarity=0.314 Sum_probs=35.4
Q ss_pred hhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 115 RDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 115 ~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
+.-.....||+|++.|++++.+.-.|+- +.+.+..-|+.+...
T Consensus 12 ~~aa~L~~l~~ql~~l~~~l~~l~~~LP-~~~em~~LL~~i~~~ 54 (147)
T 2rjz_A 12 FQAANLEAYKAQMKEMEESFGALLRQLP-SDTEVPGLLEDITRT 54 (147)
T ss_dssp GGCSSHHHHHHHHHHHHHHHHHHHHTTT-GGGHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhCC-ChhHHHHHHHHHHHH
Confidence 3445678999999999999999999986 778888888887663
No 64
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=28.81 E-value=31 Score=26.34 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=27.6
Q ss_pred cCCCCCCCCCCCcccceeEEccccCeEEc-CCCccccCC
Q 015956 258 TCAHRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMP 295 (397)
Q Consensus 258 ~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd-~dG~~~~vP 295 (397)
+||-.+.+|.... ..+.++|+-.|-.|- .+|-.+=.|
T Consensus 10 ~CP~ck~~L~~~~-~~~~LiC~~cg~~YPI~dGIPvmL~ 47 (69)
T 2pk7_A 10 ACPICKGPLKLSA-DKTELISKGAGLAYPIRDGIPVMLE 47 (69)
T ss_dssp CCTTTCCCCEECT-TSSEEEETTTTEEEEEETTEECCCG
T ss_pred eCCCCCCcCeEeC-CCCEEEcCCCCcEecCcCCeeeeCh
Confidence 6888888887543 357899999999999 588654433
No 65
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=28.45 E-value=78 Score=24.38 Aligned_cols=32 Identities=13% Similarity=0.291 Sum_probs=19.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~a 151 (397)
|..|++.+..|+++|-++..++......++.+
T Consensus 43 v~~L~kKiq~lE~eld~~ee~l~~a~~kLeea 74 (81)
T 1ic2_A 43 LVALQKKLKGTEDELDKYSESLKDAQEKLELA 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777666666665555555443
No 66
>2h8b_A Insulin-like 3; insulin/relaxin suparfamily fold, hormone/growth factor complex; NMR {Synthetic} PDB: 2k6t_A 2k6u_A
Probab=28.02 E-value=10 Score=23.73 Aligned_cols=8 Identities=50% Similarity=0.858 Sum_probs=6.6
Q ss_pred cchhhHHH
Q 015956 92 ARQDVLTI 99 (397)
Q Consensus 92 ~~~d~~~~ 99 (397)
+||||||.
T Consensus 16 t~QDLL~l 23 (26)
T 2h8b_A 16 TQQDLLTL 23 (26)
T ss_dssp CHHHHHTT
T ss_pred cHHHHHhh
Confidence 79999874
No 67
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.03 E-value=1.6e+02 Score=22.46 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=23.6
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhh
Q 015956 118 KSIGTMKKELAELQEDLAQAHRQVHISE 145 (397)
Q Consensus 118 ~~~~~~~~~l~~lq~~~~~ah~~~h~~~ 145 (397)
+|...|.++|.+|..||.+-.-|-...+
T Consensus 9 ~s~~EL~~~L~elk~ELf~LR~q~atgq 36 (72)
T 3j21_W 9 MSIEEIDAKIRELRLQLAKERGLLTMGT 36 (72)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 5789999999999999998887776664
No 68
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=25.54 E-value=31 Score=26.27 Aligned_cols=38 Identities=18% Similarity=0.343 Sum_probs=28.1
Q ss_pred cCCCCCCCCCCCcccceeEEccccCeEEc-CCCccccCCC
Q 015956 258 TCAHRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMPS 296 (397)
Q Consensus 258 ~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd-~dG~~~~vP~ 296 (397)
+||-.+.+|.... ..+.|+|+-.|-.|- .||-.+=.|.
T Consensus 10 ~CP~ck~~L~~~~-~~~~LiC~~cg~~YPI~dGIPvmL~~ 48 (68)
T 2hf1_A 10 VCPLCKGPLVFDK-SKDELICKGDRLAFPIKDGIPMMLES 48 (68)
T ss_dssp BCTTTCCBCEEET-TTTEEEETTTTEEEEEETTEECCCGG
T ss_pred ECCCCCCcCeEeC-CCCEEEcCCCCcEecCCCCeeeeChh
Confidence 6898888887543 357899999999999 5886544433
No 69
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=25.25 E-value=31 Score=26.19 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=26.9
Q ss_pred cCCCCCCCCCCCcccceeEEccccCeEEc-CCCccccCCC
Q 015956 258 TCAHRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMPS 296 (397)
Q Consensus 258 ~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd-~dG~~~~vP~ 296 (397)
+||....+|.... ..+.|+|+-.|-.|- .||-.+=.|.
T Consensus 12 ~CP~ck~~L~~~~-~~g~LvC~~c~~~YPI~dGIPvmL~~ 50 (67)
T 2jny_A 12 ACPKDKGPLRYLE-SEQLLVNERLNLAYRIDDGIPVLLID 50 (67)
T ss_dssp BCTTTCCBCEEET-TTTEEEETTTTEEEEEETTEECCCSS
T ss_pred CCCCCCCcCeEeC-CCCEEEcCCCCccccCCCCEeeeChh
Confidence 6888888887543 357899999888888 5775444433
No 70
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=24.93 E-value=32 Score=26.20 Aligned_cols=38 Identities=13% Similarity=0.184 Sum_probs=27.8
Q ss_pred cCCCCCCCCCCCcccceeEEccccCeEEc-CCCccccCCC
Q 015956 258 TCAHRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMPS 296 (397)
Q Consensus 258 ~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd-~dG~~~~vP~ 296 (397)
+||-.+.+|.... ..+.|+|+-.|-.|- .||-.+=.|.
T Consensus 10 ~CP~ck~~L~~~~-~~~~LiC~~cg~~YPI~dGIPvmL~~ 48 (68)
T 2jr6_A 10 VCPVTKGRLEYHQ-DKQELWSRQAKLAYPIKDGIPYMLEN 48 (68)
T ss_dssp BCSSSCCBCEEET-TTTEEEETTTTEEEEEETTEECCCTT
T ss_pred ECCCCCCcCeEeC-CCCEEEcCCCCcEecCCCCeeeeChh
Confidence 6888888887543 347899999999999 5886554443
No 71
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=24.68 E-value=2.1e+02 Score=24.31 Aligned_cols=43 Identities=16% Similarity=0.205 Sum_probs=24.2
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHH
Q 015956 117 YKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAYME 159 (397)
Q Consensus 117 ~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~~ 159 (397)
-+-+-.||.+|..+|.++..+..++-....++..-..++..+|
T Consensus 88 ~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le 130 (138)
T 3hnw_A 88 DKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLE 130 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3335566666666666666666665555555554444444443
No 72
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=24.64 E-value=1.5e+02 Score=22.87 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=18.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 015956 121 GTMKKELAELQEDLAQAHRQVHISEARVA 149 (397)
Q Consensus 121 ~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~ 149 (397)
.+++..|+.||+||-.--++++..+.+++
T Consensus 14 ~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~ 42 (75)
T 3a7o_A 14 DALLNTLAILQKELKSKEQEIRRLKEVIA 42 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666677666666666666666554
No 73
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=24.54 E-value=1.7e+02 Score=23.24 Aligned_cols=41 Identities=15% Similarity=0.253 Sum_probs=27.1
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhh--hhhhHHHHhhhhHHHH
Q 015956 119 SIGTMKKELAELQEDLAQAHRQVHI--SEARVATALDKLAYME 159 (397)
Q Consensus 119 ~~~~~~~~l~~lq~~~~~ah~~~h~--~~~Rv~~ald~~~~~~ 159 (397)
.|..|+.|.+.|+.+++++..++.. .+.=|++-.++|-.|-
T Consensus 9 ~i~~L~~q~~~L~~ei~~~~a~L~~~~~~~~~~~hI~~Lh~YN 51 (85)
T 3viq_B 9 RVHLLEQQKEQLESSLQDALAKLKNRDAKQTVQKHIDLLHTYN 51 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHh
Confidence 3556666666666666666665553 2445778888888883
No 74
>3qfl_A MLA10; coiled-coil, (CC) domain, NLRS, nucleotide-binding domain, L rich repeat containing receptors, protein binding; 2.00A {Hordeum vulgare}
Probab=24.07 E-value=1.1e+02 Score=24.95 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=28.8
Q ss_pred hhhccchhhHHHHHHHHHHHHHHHHHHhhhhhh--------hHHHHhhhhHHH
Q 015956 114 ARDYKSIGTMKKELAELQEDLAQAHRQVHISEA--------RVATALDKLAYM 158 (397)
Q Consensus 114 ~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~--------Rv~~ald~~~~~ 158 (397)
..|++-..-+++++..|++||..-|.-+++.+. .|..=++.|+++
T Consensus 15 ~~E~~l~~gv~~~i~~Lk~eL~~m~a~L~da~~~~~~~~d~~vk~W~~~vrdl 67 (115)
T 3qfl_A 15 TEEFKLHKGVKKNIEDLGKELESMNAALIKIGEVPREQLDSQDKLWADEVREL 67 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHH
Confidence 456666667777777777777666655555443 356666677765
No 75
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=23.88 E-value=1e+02 Score=26.38 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=17.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHH
Q 015956 122 TMKKELAELQEDLAQAHRQVHISEARVATALDKLAYM 158 (397)
Q Consensus 122 ~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~~ 158 (397)
.+++++..|-.|+..+..+.-.++.-++....++..+
T Consensus 86 ~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l 122 (138)
T 3hnw_A 86 NKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKY 122 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443
No 76
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=23.50 E-value=1e+02 Score=26.01 Aligned_cols=41 Identities=22% Similarity=0.303 Sum_probs=27.8
Q ss_pred HHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHH
Q 015956 107 VEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVA 149 (397)
Q Consensus 107 ~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~ 149 (397)
|+-|+.---+-||.+ .+++.+||+|+..-.+++++..+-|+
T Consensus 55 V~tL~~SL~~ekaq~--q~~vqeLqgEI~~Lnq~Lq~a~ae~e 95 (121)
T 3mq7_A 55 VMALMASLDAEKAQG--QKKVEELEGEITTLNHKLQDASAEVE 95 (121)
T ss_dssp HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443333445566 67799999999998888888766554
No 77
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=23.15 E-value=29 Score=26.52 Aligned_cols=37 Identities=14% Similarity=0.274 Sum_probs=26.5
Q ss_pred cCCCCCCCCCCCcccceeEEccccCeEEc-CCCccccCC
Q 015956 258 TCAHRACPLHLGSVNEGRIQCPYHGWEYS-TDGKCEKMP 295 (397)
Q Consensus 258 ~CPHRGa~Ls~G~v~~~~L~CPyHGW~Fd-~dG~~~~vP 295 (397)
+||-.+.+|.... ..+.++|+-.|-.|- .||-.+=.|
T Consensus 10 ~CP~ck~~L~~~~-~~~~LiC~~cg~~YPI~dGIPvmL~ 47 (70)
T 2js4_A 10 VCPVCKGRLEFQR-AQAELVCNADRLAFPVRDGVPIMLE 47 (70)
T ss_dssp BCTTTCCBEEEET-TTTEEEETTTTEEEEEETTEECCCG
T ss_pred ECCCCCCcCEEeC-CCCEEEcCCCCceecCCCCeeeeCh
Confidence 5888887776543 347899999999999 588544333
No 78
>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}
Probab=22.89 E-value=77 Score=25.42 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=17.1
Q ss_pred ceeEEccccCeEEcCCCccc
Q 015956 273 EGRIQCPYHGWEYSTDGKCE 292 (397)
Q Consensus 273 ~~~L~CPyHGW~Fd~dG~~~ 292 (397)
.+...|||.|-.|-.++...
T Consensus 46 ~g~~~CpYCg~~y~~~~~~~ 65 (87)
T 2jz8_A 46 TDEKICPYCSTLYRYDPSLS 65 (87)
T ss_dssp CCEECCTTTCCEEECCTTSC
T ss_pred CCeEECCCCCCEeEcCCCCC
Confidence 57899999999999887653
No 79
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=22.61 E-value=88 Score=20.85 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=15.4
Q ss_pred HHHHHHHHhhChhhhhccchhhHHHHHHHHHH
Q 015956 101 LLHEKVVEVLNPLARDYKSIGTMKKELAELQE 132 (397)
Q Consensus 101 ~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~ 132 (397)
.+-+||+|+++.. .+|..|++.|++
T Consensus 5 QledKvEel~~~~-------~~l~nEv~Rl~~ 29 (34)
T 2r2v_A 5 QVADKLEEVASKL-------YHNANELARVAK 29 (34)
T ss_dssp HHHHHHHHHHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-------HHHHHHHHHHHH
Confidence 4567888887653 355555555554
No 80
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=22.53 E-value=2.6e+02 Score=23.58 Aligned_cols=69 Identities=13% Similarity=0.184 Sum_probs=43.9
Q ss_pred ccccchhhH--HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHH
Q 015956 89 DWRARQDVL--TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (397)
Q Consensus 89 ~~~~~~d~~--~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~ 157 (397)
.|.+.++-+ .|+..-..+....+.|=..-.|-..=-+.|+.|++|+.+|-.+.-...++-+.-|.+|..
T Consensus 54 ~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIEAIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666665 344444445444555555556666777778888888888877776666666666665544
No 81
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=22.05 E-value=2.2e+02 Score=22.78 Aligned_cols=32 Identities=16% Similarity=0.270 Sum_probs=16.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHH
Q 015956 120 IGTMKKELAELQEDLAQAHRQVHISEARVATA 151 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~a 151 (397)
+..|..+|..+++.|..|..++-..+.+.+.|
T Consensus 53 ~~~lE~eld~~ee~L~ea~~kLee~ek~~~~a 84 (101)
T 3u1c_A 53 LRVTEDSRDQVLEELHKSEDSLLFAEENAAKA 84 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555533
No 82
>1oeg_A Apolipoprotein E; sialic acid, heparin-binding, repeat, signal, disease mutation, polymorphism; NMR {Homo sapiens} SCOP: j.39.1.1
Probab=21.71 E-value=38 Score=21.37 Aligned_cols=18 Identities=28% Similarity=0.442 Sum_probs=14.4
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 015956 120 IGTMKKELAELQEDLAQA 137 (397)
Q Consensus 120 ~~~~~~~l~~lq~~~~~a 137 (397)
+..||+|+++|=|.+..|
T Consensus 3 ~e~mr~Q~~~lveKvq~a 20 (26)
T 1oeg_A 3 VEDMQRQWAGLVEKVQAA 20 (26)
T ss_dssp HHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 457899999998887765
No 83
>1z23_A CRK-associated substrate; four-helix bundle, cell adhesion; NMR {Rattus norvegicus}
Probab=21.39 E-value=1e+02 Score=27.40 Aligned_cols=63 Identities=19% Similarity=0.340 Sum_probs=45.8
Q ss_pred eehhhHHHH-hh--hc--------cccc-------ccccc-----hhhHHHHHHHHHHHHhhChhh-------------h
Q 015956 72 LDVNQALEV-AR--YD--------IQYC-------DWRAR-----QDVLTIMLLHEKVVEVLNPLA-------------R 115 (397)
Q Consensus 72 ~~~~~~~~~-~~--~~--------~~~~-------~~~~~-----~d~~~~~~~~~~v~~~l~~~~-------------~ 115 (397)
||.+.|+|- .| +. ..|+ +||.+ +.+--|-.+=++|.+.|+.+. -
T Consensus 7 Ldld~A~E~L~rLQ~~v~~sVs~Ll~fv~s~~~~~~WR~~~~~le~~i~~i~~a~~~v~~Sl~efL~Farga~~nA~~~~ 86 (163)
T 1z23_A 7 LELEVAVETLARLQQGVSTTVAHLLDLVGSASGPGGWRSTSEPQEPPVQDLKAAVAAVHGAVHELLEFARSAVSSATHTS 86 (163)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCSSSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCccCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 899999886 22 22 3467 99999 666677777788888888876 3
Q ss_pred hccchhhHHHHHHHHHHHH
Q 015956 116 DYKSIGTMKKELAELQEDL 134 (397)
Q Consensus 116 ~~~~~~~~~~~l~~lq~~~ 134 (397)
|..=...||+||.-|++-+
T Consensus 87 d~~L~~kl~r~Lq~l~ds~ 105 (163)
T 1z23_A 87 DRTLHAKLSRQLQKMEDVY 105 (163)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhhHH
Confidence 4443477899998887743
No 84
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=21.06 E-value=1.5e+02 Score=29.55 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=19.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHH
Q 015956 121 GTMKKELAELQEDLAQAHRQVHISEARVATALDKLAY 157 (397)
Q Consensus 121 ~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ald~~~~ 157 (397)
..|+.+|+.|+++..+-..+++..+.++++.-.++..
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 42 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIK 42 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555555555544444443
No 85
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=20.93 E-value=2.4e+02 Score=23.33 Aligned_cols=32 Identities=22% Similarity=0.348 Sum_probs=20.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 015956 119 SIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (397)
Q Consensus 119 ~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ 150 (397)
|+..|.+||+..++++.+-..++......|..
T Consensus 5 s~~al~~eL~~~~~ei~~L~~ei~eLk~~ve~ 36 (106)
T 4e61_A 5 SLVAIQAELTKSQETIGSLNEEIEQYKGTVST 36 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56667777777777777666666655555543
No 86
>2h7b_A Core-binding factor, ML1-ETO; helix bundle, transcription; NMR {Homo sapiens} SCOP: a.277.1.1 PDB: 2pp4_A 2knh_A
Probab=20.89 E-value=63 Score=26.76 Aligned_cols=37 Identities=35% Similarity=0.366 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHH
Q 015956 98 TIMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLA 135 (397)
Q Consensus 98 ~~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~ 135 (397)
++++.|.|.-++||-=.|-|- +.=||+-|--||.|+.
T Consensus 44 ~~EeFt~~Lq~~lns~pqP~l-vPFLK~sLp~Lr~~l~ 80 (105)
T 2h7b_A 44 TIEEFHSKLQEATNFPLRPFV-IPFLKANLPLLQRELL 80 (105)
T ss_dssp CHHHHHHHHHHHSSSSCCSSS-HHHHHTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCCCcch-hHHHHHhHHHHHHHHH
Confidence 889999999999998888887 8999999999998886
No 87
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=20.82 E-value=2.1e+02 Score=20.78 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=30.4
Q ss_pred HHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 015956 102 LHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVHISEARVAT 150 (397)
Q Consensus 102 ~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h~~~~Rv~~ 150 (397)
..++|++++|. .+..+.-+++.+..+....+..+|..+.+|.+
T Consensus 16 ~~e~iv~~l~~------~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~ 58 (66)
T 3m0a_A 16 TFENIVCVLNR------EVERVAMTAEACSRQHRLDQDKIEALSSKVQQ 58 (66)
T ss_dssp HHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh------HHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHH
Confidence 34667776654 46677777888877777777888888777754
No 88
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=20.34 E-value=1.2e+02 Score=26.99 Aligned_cols=44 Identities=16% Similarity=0.222 Sum_probs=32.4
Q ss_pred HHHHHHHHHHhhChhhhhccchhhHHHHHHHHHHHHHHHHHHhh
Q 015956 99 IMLLHEKVVEVLNPLARDYKSIGTMKKELAELQEDLAQAHRQVH 142 (397)
Q Consensus 99 ~~~~~~~v~~~l~~~~~~~~~~~~~~~~l~~lq~~~~~ah~~~h 142 (397)
|...+.+.-+.+..-.-|...|..|-+|++.||.++...+.+.+
T Consensus 94 l~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~ 137 (175)
T 3lay_A 94 LISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRD 137 (175)
T ss_dssp HHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666666666655555667799999999999999888776544
No 89
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=20.24 E-value=35 Score=24.45 Aligned_cols=27 Identities=19% Similarity=0.498 Sum_probs=18.2
Q ss_pred cCCCCCCCCCCCccc-ceeEEccccCeE
Q 015956 258 TCAHRACPLHLGSVN-EGRIQCPYHGWE 284 (397)
Q Consensus 258 ~CPHRGa~Ls~G~v~-~~~L~CPyHGW~ 284 (397)
.|--.|...+....+ -..++|||.|.+
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGyr 32 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGYK 32 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCCS
T ss_pred EeeccCCCccHHHHhhCCCcccCccCcE
Confidence 466666666655432 357999999976
Done!