BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015957
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JV1|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV1|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpglcnac
pdb|1JV3|A Chain A, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
pdb|1JV3|B Chain B, Crystal Structure Of Human Agx1 Complexed With Udpgalnac
Length = 505
Score = 328 bits (842), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 190/420 (45%), Positives = 251/420 (59%), Gaps = 38/420 (9%)
Query: 2 DERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 61
D+ + W GL IS K+AVLLL+GGQGTRLG + PKG ++GLPS K+LFQ+QAERIL
Sbjct: 85 DQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERIL 144
Query: 62 CVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTI 121
+Q++A E I WYIMTS T ++T+++F HKYFGL+ + V FFQQG +
Sbjct: 145 KLQQVA-----EKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGML 199
Query: 122 PCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRV 181
P +S DG+ I+E KV+ APDGNGG+Y AL + ++EDM RGI I Y VDN LV+V
Sbjct: 200 PAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKV 259
Query: 182 ADPTFLGYFIDKGVSAGAKVVRKAYPQEXXXXXXXXXXXXPLTVVEYSELDPSLASAINQ 241
ADP F+G+ I KG GAKVV K P E VVEYSE+ SLA+A +
Sbjct: 260 ADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGV--YQVVEYSEI--SLATAQKR 315
Query: 242 ET-GRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSI--HGQTV------G 292
+ GRL F N+ H FT+ FL V N E +H+A+KKIP + GQ + G
Sbjct: 316 SSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNG 375
Query: 293 FKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSN-FDTPDSARLLVLRLHTRWVIA 351
K+E+F+FD F +A ++EVLRE+EF+P+KNA+ N D P +AR ++ LH WV+
Sbjct: 376 IKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHCWVLN 435
Query: 352 AGGFL----------------THSVPLYATGVEVSPLCSYAGENLEAICRGRTFHAPCEI 395
AGG + VP+ E+SPL SYAGE LE+ + FHAP I
Sbjct: 436 AGGHFIDENGSRLPAIPRLKDANDVPIQC---EISPLISYAGEGLESYVADKEFHAPLII 492
>pdb|1JVD|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVD|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpglcnac
pdb|1JVG|A Chain A, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
pdb|1JVG|B Chain B, Crystal Structure Of Human Agx2 Complexed With Udpgalnac
Length = 522
Score = 325 bits (834), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 191/434 (44%), Positives = 252/434 (58%), Gaps = 49/434 (11%)
Query: 2 DERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 61
D+ + W GL IS K+AVLLL+GGQGTRLG + PKG ++GLPS K+LFQ+QAERIL
Sbjct: 85 DQLQAWESEGLFQISQNKVAVLLLAGGQGTRLGVAYPKGMYDVGLPSRKTLFQIQAERIL 144
Query: 62 CVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTI 121
+Q++A E I WYIMTS T ++T+++F HKYFGL+ + V FFQQG +
Sbjct: 145 KLQQVA-----EKYYGNKCIIPWYIMTSGRTMESTKEFFTKHKYFGLKKENVIFFQQGML 199
Query: 122 PCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRV 181
P +S DG+ I+E KV+ APDGNGG+Y AL + ++EDM RGI I Y VDN LV+V
Sbjct: 200 PAMSFDGKIILEEKNKVSMAPDGNGGLYRALAAQNIVEDMEQRGIWSIHVYCVDNILVKV 259
Query: 182 ADPTFLGYFIDKGVSAGAKVVRKAYPQEXXXXXXXXXXXXPLTVVEYSELDPSLASAINQ 241
ADP F+G+ I KG GAKVV K P E VVEYSE+ SLA+A +
Sbjct: 260 ADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGV--YQVVEYSEI--SLATAQKR 315
Query: 242 ET-GRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSI--HGQTV------G 292
+ GRL F N+ H FT+ FL V N E +H+A+KKIP + GQ + G
Sbjct: 316 SSDGRLLFNAGNIANHFFTVPFLRDVVNVYEPQLQHHVAQKKIPYVDTQGQLIKPDKPNG 375
Query: 293 FKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSN-FDTPDSARLLVLRLHTRWVIA 351
K+E+F+FD F +A ++EVLRE+EF+P+KNA+ N D P +AR ++ LH WV+
Sbjct: 376 IKMEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALMSLHHCWVLN 435
Query: 352 AGGFLTH-------SVPLYATG-----------------------VEVSPLCSYAGENLE 381
AGG ++P AT E+SPL SYAGE LE
Sbjct: 436 AGGHFIDENGSRLPAIPRSATNGKSETITADVNHNLKDANDVPIQCEISPLISYAGEGLE 495
Query: 382 AICRGRTFHAPCEI 395
+ + FHAP I
Sbjct: 496 SYVADKEFHAPLII 509
>pdb|1VM8|A Chain A, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
pdb|1VM8|B Chain B, Crystal Structure Of Udp-N-Acetylglucosamine
Pyrophosphorylase (Agx2) From Mus Musculus At 2.50 A
Resolution
Length = 534
Score = 318 bits (815), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 188/435 (43%), Positives = 244/435 (56%), Gaps = 49/435 (11%)
Query: 1 MDERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERI 60
++ + W GL IS K+AVLLL+GGQGTRLG S PKG ++GLPS K+LFQ+QAERI
Sbjct: 96 QEQLQAWESEGLSQISQNKVAVLLLAGGQGTRLGVSYPKGXYDVGLPSHKTLFQIQAERI 155
Query: 61 LCVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGT 120
L +Q+LA E I WYI TS T ++T+++F HK+FGL+ + V FFQQG
Sbjct: 156 LKLQQLA-----EKHHGNKCTIPWYIXTSGRTXESTKEFFTKHKFFGLKKENVVFFQQGX 210
Query: 121 IPCVSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVR 180
+P S DG+ I+E KV+ APDGNGG+Y AL + ++ED RGI I Y VDN LV+
Sbjct: 211 LPAXSFDGKIILEEKNKVSXAPDGNGGLYRALAAQNIVEDXEQRGICSIHVYCVDNILVK 270
Query: 181 VADPTFLGYFIDKGVSAGAKVVRKAYPQEXXXXXXXXXXXXPLTVVEYSELDPSLASAIN 240
VADP F+G+ I KG GAKVV K P E VVEYSE+ SLA+A
Sbjct: 271 VADPRFIGFCIQKGADCGAKVVEKTNPTEPVGVVCRVDGV--YQVVEYSEI--SLATAQR 326
Query: 241 QET-GRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTV-------- 291
+ + GRL F N+ H FT+ FL V N E +H+A+KKIP + Q
Sbjct: 327 RSSDGRLLFNAGNIANHFFTVPFLKDVVNVYEPQLQHHVAQKKIPYVDSQGYFIKPDKPN 386
Query: 292 GFKLEQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSN-FDTPDSARLLVLRLHTRWVI 350
G K E+F+FD F +A ++EVLRE+EF+P+KNA+ N D P +AR + LH WV+
Sbjct: 387 GIKXEKFVFDIFQFAKKFVVYEVLREDEFSPLKNADSQNGKDNPTTARHALXSLHHCWVL 446
Query: 351 AAGGFLTH-------SVPLYATG-----------------------VEVSPLCSYAGENL 380
AGG ++P AT E+SPL SYAGE L
Sbjct: 447 NAGGHFIDENGSRLPAIPRSATNGKSEAITADVNHNLKDANDVPIQCEISPLISYAGEGL 506
Query: 381 EAICRGRTFHAPCEI 395
E + FHAP I
Sbjct: 507 EGYVADKEFHAPLII 521
>pdb|2YQC|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The Apo-Like
Form
pdb|2YQH|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Substrate-Binding Form
pdb|2YQH|B Chain B, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Substrate-Binding Form
pdb|2YQJ|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Reaction-Completed Form
pdb|2YQJ|B Chain B, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Reaction-Completed Form
pdb|2YQS|A Chain A, Crystal Structure Of Uridine-Diphospho-N-Acetylglucosamine
Pyrophosphorylase From Candida Albicans, In The
Product-Binding Form
Length = 486
Score = 301 bits (772), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 171/404 (42%), Positives = 242/404 (59%), Gaps = 25/404 (6%)
Query: 2 DERERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERIL 61
D + W ++GLKAI +G++AVLL++GGQGTRLGSS PKGC NI LPS KSLFQ+QAE+IL
Sbjct: 86 DILQNWTELGLKAIGNGEVAVLLMAGGQGTRLGSSAPKGCFNIELPSQKSLFQIQAEKIL 145
Query: 62 CVQRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTI 121
+++LA Q + I+WYIMTS T +AT +F + YFGL S QV FF QGT+
Sbjct: 146 KIEQLAQQYLK---STKKPIINWYIMTSGPTRNATESFFIENNYFGLNSHQVIFFNQGTL 202
Query: 122 PCVSKDG-RFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVR 180
PC + G + ++E + ++PDGNGG+Y ALK + +L+D+ ++GIK+I Y VDN LV+
Sbjct: 203 PCFNLQGNKILLELKNSICQSPDGNGGLYKALKDNGILDDLNSKGIKHIHMYCVDNCLVK 262
Query: 181 VADPTFLGYFIDKGVSAGAKVVRKAYPQEXXXXXXXXXXXXPLTVVEYSELDPSLASAIN 240
VADP F+G+ I K KVVRK E V+EYSE+ LA+ +
Sbjct: 263 VADPIFIGFAIAKKFDLATKVVRKRDANESVGLIVLDQDNQKPCVIEYSEISQELANKKD 322
Query: 241 -QETGRLRFCWSNVCLHMFTLDFLNQVAN---GLEKDSVYHLAEKKIPSIH--------- 287
Q++ +L +N+ H ++++FLN++ +K +H+A+KKIPS++
Sbjct: 323 PQDSSKLFLRAANIVNHYYSVEFLNKMIPKWISSQKYLPFHIAKKKIPSLNLENGEFYKP 382
Query: 288 GQTVGFKLEQFIFDAFPYAPSTAL--FEVLREEEFAPVKNANGSNFDTPDSARLLVLRLH 345
+ G KLEQFIFD FP EV R +EF+P+KNA+G+ DTP + R L
Sbjct: 383 TEPNGIKLEQFIFDVFPSVELNKFGCLEVDRLDEFSPLKNADGAKNDTPTTCRNHYLERS 442
Query: 346 TRWVIAAGGFLTHSVPLYATGVEVSPLCSYAGENLEAICRGRTF 389
++WVI GG + + VEV SY GE LE + G+ F
Sbjct: 443 SKWVIQNGGVIDNQ-----GLVEVDSKTSYGGEGLEFV-NGKHF 480
>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine
Pyrophosphorylase From Entamoeba Histolytica
Length = 405
Score = 210 bits (534), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/403 (32%), Positives = 210/403 (52%), Gaps = 36/403 (8%)
Query: 4 RERWWKMGLKAISDGKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCV 63
+E +++ GL+ IS GK A++ +GGQG+RLG PKG + KS+FQ+ +ER+L +
Sbjct: 21 KEHYYR-GLELISQGKTALITPAGGQGSRLGFEHPKGMFVLPFEIPKSIFQMTSERLLRL 79
Query: 64 QRLAAQVTSEGGGSGSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPC 123
Q LA SE + IHW++MT+ T + YF+ H+YFGL S+Q+ F QG +P
Sbjct: 80 QELA----SEYSHQKNVMIHWFLMTNEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPV 135
Query: 124 VSKDGRFIMETPYKVAKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVAD 183
V +G+ + E K AP+G+GG++ ALK + +LE M +GIKY + VDN L + D
Sbjct: 136 VDFNGKILYEKKDKPYMAPNGHGGLFKALKDNGILEFMNEKGIKYSVAHNVDNILCKDVD 195
Query: 184 PTFLGYFIDKGVSAGAKVVRKAYPQEXXXXXXXXXXXXPLTVVEYSELDPSLASAINQET 243
P +GY K+V+K + +E + VVEY+EL L ++
Sbjct: 196 PNMIGYMDLLQSEICIKIVKKGFKEEKVGVLVKEQER--IKVVEYTELTDELNKQLS--N 251
Query: 244 GRLRFCWSNVCLHMFTLDFLNQVANGLEKDSVYHLAEKKIPSIHGQTV--------GFKL 295
G + ++ ++ ++ FL + A E YH+A+KK+P ++ Q + G K
Sbjct: 252 GEFIYNCGHISINGYSTSFLEKAA---EYQLPYHIAKKKVPFVNEQGIVIHPSENNGIKK 308
Query: 296 EQFIFDAFPYAPSTALFEVLREEEFAPVKNANGSNFDTPDSARLLVLRLHTRWVIAAGGF 355
E F FD FP A ++FE+ R EF+ +KN+ +FD ++ + RL+ ++ AG
Sbjct: 309 EIFFFDVFPLATKVSIFEIQRFIEFSALKNSLNESFDNVNTVKRDWYRLNIYYLKKAGAI 368
Query: 356 LTHSVPLYATGVEVSPLC------SYAGENLEAICRGRTFHAP 392
+ S SP+C S+ E L+ +G+T P
Sbjct: 369 VDDS---------KSPICEISFRKSFEEEGLKEF-KGKTIQLP 401
>pdb|2I5K|A Chain A, Crystal Structure Of Ugp1p
pdb|2I5K|B Chain B, Crystal Structure Of Ugp1p
Length = 488
Score = 45.1 bits (105), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 73/180 (40%), Gaps = 20/180 (11%)
Query: 18 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGS 77
KLAVL L+GG GT +G PK + + G + L +I + R Q S+
Sbjct: 91 SKLAVLKLNGGLGTSMGCVGPKSVIEVR--EGNTFLDLSVRQIEYLNR---QYDSD---- 141
Query: 78 GSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYK 137
+ +M S TD T K + ++ F Q P V KD + T Y
Sbjct: 142 ----VPLLLMNSFNTDKDTEHLI---KKYSANRIRIRSFNQSRFPRVYKDSLLPVPTEYD 194
Query: 138 V---AKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKG 194
A P G+G ++ +L S L+ + +G + + DN L D L + I+ G
Sbjct: 195 SPLDAWYPPGHGDLFESLHVSGELDALIAQGREILFVSNGDN-LGATVDLKILNHMIETG 253
>pdb|3R2W|A Chain A, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|B Chain B, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|C Chain C, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R2W|D Chain D, Crystal Strucutre Of Udp-Glucose Pyrophosphorylase Of Homo
Sapiens
pdb|3R3I|A Chain A, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|B Chain B, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|C Chain C, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
pdb|3R3I|D Chain D, Crystal Structure Of C-Terminal Truncation Of Udp-Glucose
Pyrophosphorylase Of Homo Sapiens
Length = 528
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 74/171 (43%), Gaps = 34/171 (19%)
Query: 18 GKLAVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGS 77
KL V+ L+GG GT +G PK IG+ + + L ++I + + +
Sbjct: 126 NKLVVVKLNGGLGTSMGCKGPKSL--IGVRNENTFLDLTVQQIEHLNK-----------T 172
Query: 78 GSAAIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYK 137
+ + +M S TD+ T+K + + + + ++ F Q P ++K E+
Sbjct: 173 YNTDVPLVLMNSFNTDEDTKKILQKYNHCRV---KIYTFNQSRYPRINK------ESLLP 223
Query: 138 VAKA------------PDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDN 176
VAK P G+G +Y++ +S LL+ G +YI +DN
Sbjct: 224 VAKDVSYSGENTEAWYPPGHGDIYASFYNSGLLDTFIGEGKEYIFVSNIDN 274
>pdb|3GUE|A Chain A, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
pdb|3GUE|B Chain B, Crystal Structure Of Udp-Glucose Phosphorylase From
Trypanosoma Brucei, (Tb10.389.0330)
Length = 484
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 76/187 (40%), Gaps = 16/187 (8%)
Query: 21 AVLLLSGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSA 80
VL L+GG GT +G + PK + + +G++ A ++ +++ +
Sbjct: 78 VVLKLNGGLGTGMGLNGPKSLLQV--KNGQTFLDFTALQLEHFRQVR-----------NC 124
Query: 81 AIHWYIMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRF--IMETPYKV 138
+ + +M S T T+ + + D Q +P + +D F E
Sbjct: 125 NVPFMLMNSFSTSGETKNFLRKYPTLYEVFDSDIELMQNRVPKIRQDNFFPVTYEADPTC 184
Query: 139 AKAPDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSAG 198
P G+G VY+ L SS L+ + +G +Y+ DN L D L Y +K +
Sbjct: 185 EWVPPGHGDVYTVLYSSGKLDYLLGKGYRYMFISNGDN-LGATLDVRLLDYMHEKQLGFL 243
Query: 199 AKVVRKA 205
+V R+
Sbjct: 244 MEVCRRT 250
>pdb|1Z90|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|1Z90|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At3g03250, A Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
pdb|2Q4J|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At3g03250, A
Putative Udp-Glucose Pyrophosphorylase
Length = 469
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 20/169 (11%)
Query: 26 SGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWY 85
+GG GT +G + PK + + G + L + Q+ + G +
Sbjct: 86 NGGLGTTMGCTGPKSVIEVR--DGLTFLDL----------IVIQIENLNNKYG-CKVPLV 132
Query: 86 IMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKA---P 142
+M S T D T K E KY D + F Q P V D + K K P
Sbjct: 133 LMNSFNTHDDTHKIVE--KYTNSNVD-IHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYP 189
Query: 143 DGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFI 191
G+G V+ AL +S L+ ++G +Y+ DN L + D T L + I
Sbjct: 190 PGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDLTILKHLI 237
>pdb|2ICX|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICX|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Utp
pdb|2ICY|A Chain A, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
pdb|2ICY|B Chain B, Crystal Structure Of A Putative Udp-Glucose
Pyrophosphorylase From Arabidopsis Thaliana With Bound
Udp- Glucose
Length = 469
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 68/169 (40%), Gaps = 20/169 (11%)
Query: 26 SGGQGTRLGSSDPKGCVNIGLPSGKSLFQLQAERILCVQRLAAQVTSEGGGSGSAAIHWY 85
+GG GT +G + PK + + G + L + Q+ + G +
Sbjct: 86 NGGLGTTMGCTGPKSVIEVR--DGLTFLDL----------IVIQIENLNNKYG-CKVPLV 132
Query: 86 IMTSPFTDDATRKYFEGHKYFGLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKA---P 142
+M S T D T K E KY D + F Q P V D + K K P
Sbjct: 133 LMNSFNTHDDTHKIVE--KYTNSNVD-IHTFNQSKYPRVVADEFVPWPSKGKTDKEGWYP 189
Query: 143 DGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFI 191
G+G V+ AL +S L+ ++G +Y+ DN L + D T L + I
Sbjct: 190 PGHGDVFPALMNSGKLDTFLSQGKEYVFVANSDN-LGAIVDLTILKHLI 237
>pdb|2OEF|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
pdb|2OEG|A Chain A, Open And Closed Structures Of The Udp-Glucose
Pyrophosphorylase From Leishmania Major
Length = 505
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 10/57 (17%)
Query: 141 APDGNGGVYSALKSSKLLEDMATRGIKYIDCYGVDNALVRVADPTFLGYFIDKGVSA 197
AP G+G +Y+AL S L+++ +G +Y DN LG IDK V A
Sbjct: 187 APPGHGDIYTALYGSGKLQELVEQGYRYXFVSNGDN----------LGATIDKRVLA 233
>pdb|3IZR|SS Chain s, Localization Of The Large Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 319
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 22/46 (47%)
Query: 107 GLESDQVTFFQQGTIPCVSKDGRFIMETPYKVAKAPDGNGGVYSAL 152
GL+ Q +FFQ IP G + TP ++ K D G SAL
Sbjct: 132 GLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGSSESAL 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,904,682
Number of Sequences: 62578
Number of extensions: 498416
Number of successful extensions: 1125
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1084
Number of HSP's gapped (non-prelim): 18
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)