BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015960
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QO6|A Chain A, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|B Chain B, Crystal Structure Analysis Of The Plant Protease Deg1
pdb|3QO6|C Chain C, Crystal Structure Analysis Of The Plant Protease Deg1
Length = 348
Score = 332 bits (851), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 181/335 (54%), Positives = 227/335 (67%), Gaps = 7/335 (2%)
Query: 68 FFVSRQCKLKTDEVETAGIFEENLPSVVHITNFGM--NTFTL-TMEYPQATGTGFIWDED 124
F VS KL+TDE+ T +F+EN PSVV+ITN + + FTL +E PQ +G+GF+WD+
Sbjct: 4 FVVSTPKKLQTDELATVRLFQENTPSVVYITNLAVRQDAFTLDVLEVPQGSGSGFVWDKQ 63
Query: 125 GHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSA 184
GHIVTN+HVI GAS ++VTL D+TT DAKVVG DQ D+AVL IDAP +KLR IPVGVSA
Sbjct: 64 GHIVTNYHVIRGASDLRVTLADQTTFDAKVVGFDQDKDVAVLRIDAPKNKLRPIPVGVSA 123
Query: 185 NLRIGQKVYAIGHPLGRKFTCTAGIISAFGLE-PITATGPPIQGLIQIDAAINRXXXXXX 243
+L +GQKV+AIG+P G T T G+IS E ATG PIQ +IQ DAAIN
Sbjct: 124 DLLVGQKVFAIGNPFGLDHTLTTGVISGLRREISSAATGRPIQDVIQTDAAINPGNSGGP 183
Query: 244 XXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVKFGKIIRPYLGI--AHDQ 301
+NT+I + + A G+ SIP+DTV GIVDQLV+FGK+ RP LGI A DQ
Sbjct: 184 LLDSSGTLIGINTAIYSPSGASSGVGFSIPVDTVGGIVDQLVRFGKVTRPILGIKFAPDQ 243
Query: 302 LLEKLMGISGGVIFIAVEEGPAGKAGLRSTKFGANGKFILGDIIKAVNGEDVSNANDLHN 361
+E+L G+SG ++ A GPAGKAGL+STK G+ +LGDII +VNG VSN +DL+
Sbjct: 244 SVEQL-GVSGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGSDLYR 302
Query: 362 ILDQCKVGDEVIVRILRGTQXXXXXXXXXVEPDEA 396
ILDQCKVGDEV V +LRG +PDE+
Sbjct: 303 ILDQCKVGDEVTVEVLRGDHKEKISVTLEPKPDES 337
>pdb|2ZLE|A Chain A, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|B Chain B, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|C Chain C, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|E Chain E, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|F Chain F, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|G Chain G, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|H Chain H, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|I Chain I, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|J Chain J, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|K Chain K, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|L Chain L, Cryo-Em Structure Of Degp12OMP
pdb|2ZLE|M Chain M, Cryo-Em Structure Of Degp12OMP
Length = 448
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 140/272 (51%), Gaps = 21/272 (7%)
Query: 114 ATGTGFIWDED-GHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPN 172
A G+G I D D G++VTN+HV++ A+ +KV L D DAK+VG D +D+A++ I P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPK 145
Query: 173 HKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIISAFGLEPITATGPPIQGLIQID 232
+ L +I + S LR+G AIG+P G T T+GI+SA G + A + IQ D
Sbjct: 146 N-LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAEN--YENFIQTD 202
Query: 233 AAINRXXXXXXXXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVKFGKIIR 292
AAINR +NT+I+ G+ +IP + V + Q+V++G++ R
Sbjct: 203 AAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKR 262
Query: 293 PYLGIAHDQL---LEKLMGIS---GGVIFIAVEEGPAGKAGLRSTKFGANGKFILGDIIK 346
LGI +L L K M + G + + A KAG+++ GD+I
Sbjct: 263 GELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKA-----------GDVIT 311
Query: 347 AVNGEDVSNANDLHNILDQCKVGDEVIVRILR 378
++NG+ +S+ L + VG ++ + +LR
Sbjct: 312 SLNGKPISSFAALRAQVGTMPVGSKLTLGLLR 343
>pdb|4A8D|A Chain A, Degp Dodecamer With Bound Omp
pdb|4A8D|B Chain B, Degp Dodecamer With Bound Omp
pdb|4A8D|C Chain C, Degp Dodecamer With Bound Omp
pdb|4A8D|D Chain D, Degp Dodecamer With Bound Omp
pdb|4A8D|E Chain E, Degp Dodecamer With Bound Omp
pdb|4A8D|F Chain F, Degp Dodecamer With Bound Omp
pdb|4A8D|G Chain G, Degp Dodecamer With Bound Omp
pdb|4A8D|H Chain H, Degp Dodecamer With Bound Omp
pdb|4A8D|I Chain I, Degp Dodecamer With Bound Omp
pdb|4A8D|J Chain J, Degp Dodecamer With Bound Omp
pdb|4A8D|K Chain K, Degp Dodecamer With Bound Omp
pdb|4A8D|L Chain L, Degp Dodecamer With Bound Omp
Length = 448
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 140/272 (51%), Gaps = 21/272 (7%)
Query: 114 ATGTGFIWDED-GHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPN 172
A G+G I D D G++VTN+HV++ A+ +KV L D DAK+VG D +D+A++ I P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPK 145
Query: 173 HKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIISAFGLEPITATGPPIQGLIQID 232
+ L +I + S LR+G AIG+P G T T+GI+SA G + A + IQ D
Sbjct: 146 N-LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAEN--YENFIQTD 202
Query: 233 AAINRXXXXXXXXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVKFGKIIR 292
AAINR +NT+I+ G+ +IP + V + Q+V++G++ R
Sbjct: 203 AAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKR 262
Query: 293 PYLGIAHDQL---LEKLMGIS---GGVIFIAVEEGPAGKAGLRSTKFGANGKFILGDIIK 346
LGI +L L K M + G + + A KAG+++ GD+I
Sbjct: 263 GELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKA-----------GDVIT 311
Query: 347 AVNGEDVSNANDLHNILDQCKVGDEVIVRILR 378
++NG+ +S+ L + VG ++ + +LR
Sbjct: 312 SLNGKPISSFAALRAQVGTMPVGSKLTLGLLR 343
>pdb|3OTP|A Chain A, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|B Chain B, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|C Chain C, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|D Chain D, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|E Chain E, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
pdb|3OTP|F Chain F, Crystal Structure Of The Degp Dodecamer With A Model
Substrate
Length = 459
Score = 127 bits (318), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 140/272 (51%), Gaps = 21/272 (7%)
Query: 114 ATGTGFIWDED-GHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPN 172
A G+G I D D G++VTN+HV++ A+ +KV L D DAK+VG D +D+A++ I P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPK 145
Query: 173 HKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIISAFGLEPITATGPPIQGLIQID 232
+ L +I + S LR+G AIG+P G T T+GI+SA G + A + IQ D
Sbjct: 146 N-LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAEN--YENFIQTD 202
Query: 233 AAINRXXXXXXXXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVKFGKIIR 292
AAINR +NT+I+ G+ +IP + V + Q+V++G++ R
Sbjct: 203 AAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKR 262
Query: 293 PYLGIAHDQL---LEKLMGIS---GGVIFIAVEEGPAGKAGLRSTKFGANGKFILGDIIK 346
LGI +L L K M + G + + A KAG+++ GD+I
Sbjct: 263 GELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKA-----------GDVIT 311
Query: 347 AVNGEDVSNANDLHNILDQCKVGDEVIVRILR 378
++NG+ +S+ L + VG ++ + +LR
Sbjct: 312 SLNGKPISSFAALRAQVGTMPVGSKLTLGLLR 343
>pdb|3MH5|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH5|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH6|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 140/272 (51%), Gaps = 21/272 (7%)
Query: 114 ATGTGFIWDED-GHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPN 172
A G+G I D D G++VTN+HV++ A+ +KV L D DAK+VG D +D+A++ I P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPK 145
Query: 173 HKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIISAFGLEPITATGPPIQGLIQID 232
+ L +I + S LR+G AIG+P G T T+GI+SA G + A + IQ D
Sbjct: 146 N-LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAEN--YENFIQTD 202
Query: 233 AAINRXXXXXXXXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVKFGKIIR 292
AAINR +NT+I+ G+ +IP + V + Q+V++G++ R
Sbjct: 203 AAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKR 262
Query: 293 PYLGIAHDQL---LEKLMGIS---GGVIFIAVEEGPAGKAGLRSTKFGANGKFILGDIIK 346
LGI +L L K M + G + + A KAG+++ GD+I
Sbjct: 263 GELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKA-----------GDVIT 311
Query: 347 AVNGEDVSNANDLHNILDQCKVGDEVIVRILR 378
++NG+ +S+ L + VG ++ + +LR
Sbjct: 312 SLNGKPISSFAALRAQVGTMPVGSKLTLGLLR 343
>pdb|3MH4|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
pdb|3MH4|B Chain B, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 88/272 (32%), Positives = 140/272 (51%), Gaps = 21/272 (7%)
Query: 114 ATGTGFIWDED-GHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPN 172
A G+G I D D G++VTN+HV++ A+ +KV L D DAK+VG D +D+A++ I P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKMVGKDPRSDIALIQIQNPK 145
Query: 173 HKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIISAFGLEPITATGPPIQGLIQID 232
+ L +I + S LR+G AIG+P G T T+GI+SA G + A + IQ D
Sbjct: 146 N-LTAIKMADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAEN--YENFIQTD 202
Query: 233 AAINRXXXXXXXXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVKFGKIIR 292
AAINR +NT+I+ G+ +IP + V + Q+V++G++ R
Sbjct: 203 AAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNMVKNLTSQMVEYGQVKR 262
Query: 293 PYLGIAHDQL---LEKLMGIS---GGVIFIAVEEGPAGKAGLRSTKFGANGKFILGDIIK 346
LGI +L L K M + G + + A KAG+++ GD+I
Sbjct: 263 GELGIMGTELNSELAKAMKVDAQRGAFVSQVLPNSSAAKAGIKA-----------GDVIT 311
Query: 347 AVNGEDVSNANDLHNILDQCKVGDEVIVRILR 378
++NG+ +S+ L + VG ++ + +LR
Sbjct: 312 SLNGKPISSFAALRAQVGTMPVGSKLTLGLLR 343
>pdb|3CS0|A Chain A, Crystal Structure Of Degp24
Length = 448
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 135/272 (49%), Gaps = 21/272 (7%)
Query: 114 ATGTGFIWDED-GHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPN 172
A G+G I D D G++VTN+HV++ A+ +KV L D DAK VG D +D+A++ I P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPK 145
Query: 173 HKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIISAFGLEPITATGPPIQGLIQID 232
+ L +I S LR+G AIG+P G T T+GI+SA G + A + IQ D
Sbjct: 146 N-LTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAEN--YENFIQTD 202
Query: 233 AAINRXXXXXXXXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVKFGKIIR 292
AAINR +NT+I+ G+ +IP + V + Q V++G++ R
Sbjct: 203 AAINRGNSGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKR 262
Query: 293 PYLGIAHDQLLEKLMGIS------GGVIFIAVEEGPAGKAGLRSTKFGANGKFILGDIIK 346
LGI +L +L G + + A KAG+++ GD+I
Sbjct: 263 GELGIXGTELNSELAKAXKVDAQRGAFVSQVLPNSSAAKAGIKA-----------GDVIT 311
Query: 347 AVNGEDVSNANDLHNILDQCKVGDEVIVRILR 378
++NG+ +S+ L + VG ++ + +LR
Sbjct: 312 SLNGKPISSFAALRAQVGTXPVGSKLTLGLLR 343
>pdb|1KY9|A Chain A, Crystal Structure Of Degp (Htra)
pdb|1KY9|B Chain B, Crystal Structure Of Degp (Htra)
pdb|3OU0|A Chain A, Re-Refined 3cs0
Length = 448
Score = 122 bits (305), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 135/272 (49%), Gaps = 21/272 (7%)
Query: 114 ATGTGFIWDED-GHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPN 172
A G+G I D D G++VTN+HV++ A+ +KV L D DAK VG D +D+A++ I P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPK 145
Query: 173 HKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIISAFGLEPITATGPPIQGLIQID 232
+ L +I S LR+G AIG+P G T T+GI+SA G + A + IQ D
Sbjct: 146 N-LTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAEN--YENFIQTD 202
Query: 233 AAINRXXXXXXXXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVKFGKIIR 292
AAINR +NT+I+ G+ +IP + V + Q V++G++ R
Sbjct: 203 AAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKR 262
Query: 293 PYLGIAHDQLLEKLMGIS------GGVIFIAVEEGPAGKAGLRSTKFGANGKFILGDIIK 346
LGI +L +L G + + A KAG+++ GD+I
Sbjct: 263 GELGIXGTELNSELAKAXKVDAQRGAFVSQVLPNSSAAKAGIKA-----------GDVIT 311
Query: 347 AVNGEDVSNANDLHNILDQCKVGDEVIVRILR 378
++NG+ +S+ L + VG ++ + +LR
Sbjct: 312 SLNGKPISSFAALRAQVGTXPVGSKLTLGLLR 343
>pdb|3MH7|A Chain A, Htra Proteases Are Activated By A Conserved Mechanism That
Can Be Triggered By Distinct Molecular Cues
Length = 456
Score = 122 bits (305), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 86/272 (31%), Positives = 135/272 (49%), Gaps = 21/272 (7%)
Query: 114 ATGTGFIWDED-GHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPN 172
A G+G I D D G++VTN+HV++ A+ +KV L D DAK VG D +D+A++ I P
Sbjct: 86 ALGSGVIIDADKGYVVTNNHVVDNATVIKVQLSDGRKFDAKXVGKDPRSDIALIQIQNPK 145
Query: 173 HKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIISAFGLEPITATGPPIQGLIQID 232
+ L +I S LR+G AIG+P G T T+GI+SA G + A + IQ D
Sbjct: 146 N-LTAIKXADSDALRVGDYTVAIGNPFGLGETVTSGIVSALGRSGLNAEN--YENFIQTD 202
Query: 233 AAINRXXXXXXXXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVKFGKIIR 292
AAINR +NT+I+ G+ +IP + V + Q V++G++ R
Sbjct: 203 AAINRGNAGGALVNLNGELIGINTAILAPDGGNIGIGFAIPSNXVKNLTSQXVEYGQVKR 262
Query: 293 PYLGIAHDQLLEKLMGIS------GGVIFIAVEEGPAGKAGLRSTKFGANGKFILGDIIK 346
LGI +L +L G + + A KAG+++ GD+I
Sbjct: 263 GELGIXGTELNSELAKAXKVDAQRGAFVSQVLPNSSAAKAGIKA-----------GDVIT 311
Query: 347 AVNGEDVSNANDLHNILDQCKVGDEVIVRILR 378
++NG+ +S+ L + VG ++ + +LR
Sbjct: 312 SLNGKPISSFAALRAQVGTXPVGSKLTLGLLR 343
>pdb|3PV3|A Chain A, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|B Chain B, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|C Chain C, Structure Of Legionella Fallonii Degq (S193a Variant)
pdb|3PV3|D Chain D, Structure Of Legionella Fallonii Degq (S193a Variant)
Length = 451
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 135/279 (48%), Gaps = 28/279 (10%)
Query: 113 QATGTGFIWD-EDGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAP 171
++ G+G I D +G I+TN HVI AS + VTL D L A+++G D TDLAVL IDA
Sbjct: 76 ESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAK 135
Query: 172 NHKLRSIPVGVSANLRIGQKVYAIGHP-----LGRKFTCTAGIISAFGLEPITATGPPIQ 226
N L+S+ +G S L +G V AIG+P G + T GI+SA + G ++
Sbjct: 136 N--LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEG--VE 191
Query: 227 GLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVK 286
IQ DAAIN +NT+I++ G+ +IPI+ V + Q++K
Sbjct: 192 NFIQTDAAINPGNAGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIK 251
Query: 287 FGKIIRPYLGIAHDQL---LEKLMG----ISGGVIFIAVEEGPAGKAGLRSTKFGANGKF 339
FG I R +GI L L + MG G ++ PA AGL++
Sbjct: 252 FGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKA--------- 302
Query: 340 ILGDIIKAVNGEDVSNANDLHNILDQCKVGDEVIVRILR 378
GDII +N ++ A + + +VG V + + R
Sbjct: 303 --GDIITQINDTKITQATQVKTTISLLRVGSTVKIIVER 339
>pdb|3PV2|A Chain A, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|B Chain B, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|C Chain C, Structure Of Legionella Fallonii Degq (Wt)
pdb|3PV2|D Chain D, Structure Of Legionella Fallonii Degq (Wt)
Length = 451
Score = 118 bits (295), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 135/279 (48%), Gaps = 28/279 (10%)
Query: 113 QATGTGFIWD-EDGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAP 171
++ G+G I D +G I+TN HVI AS + VTL D L A+++G D TDLAVL IDA
Sbjct: 76 ESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAK 135
Query: 172 NHKLRSIPVGVSANLRIGQKVYAIGHP-----LGRKFTCTAGIISAFGLEPITATGPPIQ 226
N L+S+ +G S L +G V AIG+P G + T GI+SA + G ++
Sbjct: 136 N--LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEG--VE 191
Query: 227 GLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVK 286
IQ DAAIN +NT+I++ G+ +IPI+ V + Q++K
Sbjct: 192 NFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIK 251
Query: 287 FGKIIRPYLGIAHDQL---LEKLMG----ISGGVIFIAVEEGPAGKAGLRSTKFGANGKF 339
FG I R +GI L L + MG G ++ PA AGL++
Sbjct: 252 FGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKA--------- 302
Query: 340 ILGDIIKAVNGEDVSNANDLHNILDQCKVGDEVIVRILR 378
GDII +N ++ A + + +VG V + + R
Sbjct: 303 --GDIITQINDTKITQATQVKTTISLLRVGSTVKIIVER 339
>pdb|3PV4|A Chain A, Structure Of Legionella Fallonii Degq (Delta-Pdz2 Variant)
Length = 354
Score = 117 bits (294), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 92/279 (32%), Positives = 135/279 (48%), Gaps = 28/279 (10%)
Query: 113 QATGTGFIWD-EDGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAP 171
++ G+G I D +G I+TN HVI AS + VTL D L A+++G D TDLAVL IDA
Sbjct: 76 ESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAK 135
Query: 172 NHKLRSIPVGVSANLRIGQKVYAIGHP-----LGRKFTCTAGIISAFGLEPITATGPPIQ 226
N L+S+ +G S L +G V AIG+P G + T GI+SA + G ++
Sbjct: 136 N--LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEG--VE 191
Query: 227 GLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVK 286
IQ DAAIN +NT+I++ G+ +IPI+ V + Q++K
Sbjct: 192 NFIQTDAAINPGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIK 251
Query: 287 FGKIIRPYLGIAHDQL---LEKLMG----ISGGVIFIAVEEGPAGKAGLRSTKFGANGKF 339
FG I R +GI L L + MG G ++ PA AGL++
Sbjct: 252 FGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKA--------- 302
Query: 340 ILGDIIKAVNGEDVSNANDLHNILDQCKVGDEVIVRILR 378
GDII +N ++ A + + +VG V + + R
Sbjct: 303 --GDIITQINDTKITQATQVKTTISLLRVGSTVKIIVER 339
>pdb|3PV5|A Chain A, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|B Chain B, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|C Chain C, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
pdb|3PV5|D Chain D, Structure Of Legionella Fallonii Degq (N189gP190G VARIANT)
Length = 451
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 91/279 (32%), Positives = 134/279 (48%), Gaps = 28/279 (10%)
Query: 113 QATGTGFIWD-EDGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAP 171
++ G+G I D +G I+TN HVI AS + VTL D L A+++G D TDLAVL IDA
Sbjct: 76 ESIGSGVIIDPNNGVIITNDHVIRNASLITVTLQDGRRLKARLIGGDSETDLAVLKIDAK 135
Query: 172 NHKLRSIPVGVSANLRIGQKVYAIGHP-----LGRKFTCTAGIISAFGLEPITATGPPIQ 226
N L+S+ +G S L +G V AIG+P G + T GI+SA + G ++
Sbjct: 136 N--LKSLVIGDSDKLEVGDFVVAIGNPFGLNSFGNSQSATFGIVSALKRSDLNIEG--VE 191
Query: 227 GLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVK 286
IQ DAAI +NT+I++ G+ +IPI+ V + Q++K
Sbjct: 192 NFIQTDAAIGGGNSGGALVNAKGELIGINTAILSPYGGNVGIGFAIPINMVKDVAQQIIK 251
Query: 287 FGKIIRPYLGIAHDQL---LEKLMG----ISGGVIFIAVEEGPAGKAGLRSTKFGANGKF 339
FG I R +GI L L + MG G ++ PA AGL++
Sbjct: 252 FGSIHRGLMGIFVQHLTPELAQAMGYPEDFQGALVSQVNPNSPAELAGLKA--------- 302
Query: 340 ILGDIIKAVNGEDVSNANDLHNILDQCKVGDEVIVRILR 378
GDII +N ++ A + + +VG V + + R
Sbjct: 303 --GDIITQINDTKITQATQVKTTISLLRVGSTVKIIVER 339
>pdb|3STJ|A Chain A, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|B Chain B, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|C Chain C, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|D Chain D, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|E Chain E, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|F Chain F, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|G Chain G, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|H Chain H, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|I Chain I, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|J Chain J, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|K Chain K, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
pdb|3STJ|L Chain L, Crystal Structure Of The Protease + Pdz1 Domain Of Degq
From Escherichia Coli
Length = 345
Score = 112 bits (280), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 136/273 (49%), Gaps = 21/273 (7%)
Query: 113 QATGTGFIWD-EDGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAP 171
+ G+G I + G+++TN+HVI A + + L D DAK++G D +D+A+L I P
Sbjct: 62 EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNP 121
Query: 172 NHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIISAFGLEPITATGPPIQGLIQI 231
+ KL I + S LR+G A+G+P G T T+GI+SA G + G ++ IQ
Sbjct: 122 S-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEG--LENFIQT 178
Query: 232 DAAINRXXXXXXXXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVKFGKII 291
DA+INR +NT+I+ G+ +IP + + QL+ FG+I
Sbjct: 179 DASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIK 238
Query: 292 RPYLGIAHDQLLEKL-----MGISGGVIFIAVEEGP-AGKAGLRSTKFGANGKFILGDII 345
R LGI ++ + + + G V G + KAG+++ GDII
Sbjct: 239 RGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKA-----------GDII 287
Query: 346 KAVNGEDVSNANDLHNILDQCKVGDEVIVRILR 378
++NG+ +++ +L + + + G +V + +LR
Sbjct: 288 TSLNGKPLNSFAELRSRIATTEPGTKVKLGLLR 320
>pdb|1SOZ|A Chain A, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|B Chain B, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1SOZ|C Chain C, Crystal Structure Of Degs Protease In Complex With An
Activating Peptide
pdb|1VCW|A Chain A, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|B Chain B, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|1VCW|C Chain C, Crystal Structure Of Degs After Backsoaking The Activating
Peptide
pdb|2R3Y|A Chain A, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|B Chain B, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
pdb|2R3Y|C Chain C, Crystal Structure Of The Degs Protease In Complex With The
Ywf Activating Peptide
Length = 314
Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 126/250 (50%), Gaps = 18/250 (7%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 15 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE 74
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T T GIIS
Sbjct: 75 ALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS 133
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q +Q DA+IN +NT ++ + G+
Sbjct: 134 ATGRIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGI 191
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIRPYLGIAHDQL---------LEKLMGISGGVIFIAVE 319
+IP + I+D+L++ G++IR Y+GI ++ +++L GI V+
Sbjct: 192 GFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGI---VVNEVSP 248
Query: 320 EGPAGKAGLR 329
+GPA AG++
Sbjct: 249 DGPAANAGIQ 258
>pdb|4A8A|A Chain A, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|B Chain B, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|C Chain C, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|D Chain D, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|E Chain E, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|F Chain F, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|G Chain G, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|H Chain H, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|I Chain I, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|J Chain J, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|K Chain K, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8A|L Chain L, Asymmetric Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozyme
pdb|4A8B|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8B|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With Lysozymes
pdb|4A8C|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A8C|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 12-Mer
In Complex With A Binding Peptide
pdb|4A9G|A Chain A, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|B Chain B, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|C Chain C, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|D Chain D, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|E Chain E, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|F Chain F, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|G Chain G, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|H Chain H, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|I Chain I, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|J Chain J, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|K Chain K, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|L Chain L, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|M Chain M, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|N Chain N, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|O Chain O, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|P Chain P, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Q Chain Q, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|R Chain R, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|S Chain S, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|T Chain T, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|U Chain U, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|V Chain V, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|W Chain W, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
pdb|4A9G|Y Chain Y, Symmetrized Cryo-Em Reconstruction Of E. Coli Degq 24-Mer
In Complex With Beta-Casein
Length = 436
Score = 111 bits (278), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 80/273 (29%), Positives = 136/273 (49%), Gaps = 21/273 (7%)
Query: 113 QATGTGFIWD-EDGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAP 171
+ G+G I + G+++TN+HVI A + + L D DAK++G D +D+A+L I P
Sbjct: 62 EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNP 121
Query: 172 NHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIISAFGLEPITATGPPIQGLIQI 231
+ KL I + S LR+G A+G+P G T T+GI+SA G + G ++ IQ
Sbjct: 122 S-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEG--LENFIQT 178
Query: 232 DAAINRXXXXXXXXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVKFGKII 291
DA+INR +NT+I+ G+ +IP + + QL+ FG+I
Sbjct: 179 DASINRGNAGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIK 238
Query: 292 RPYLGIAHDQLLEKL-----MGISGGVIFIAVEEGP-AGKAGLRSTKFGANGKFILGDII 345
R LGI ++ + + + G V G + KAG+++ GDII
Sbjct: 239 RGLLGIKGTEMSADIAKAFNLDVQRGAFVSEVLPGSGSAKAGVKA-----------GDII 287
Query: 346 KAVNGEDVSNANDLHNILDQCKVGDEVIVRILR 378
++NG+ +++ +L + + + G +V + +LR
Sbjct: 288 TSLNGKPLNSFAELRSRIATTEPGTKVKLGLLR 320
>pdb|3GCN|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Omp Peptide (Yqf)
pdb|3GCO|A Chain A, Crystal Structure Of Degs H198p/d320a Mutant Modified By
Dfp In Complex With Dnrdgnvyqf Omp Peptide
pdb|3GDS|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP IN Complex With Dnrdgnvyyf Peptide
pdb|3GDU|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDU|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yrf Peptide
pdb|3GDV|A Chain A, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|B Chain B, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
pdb|3GDV|C Chain C, Crystal Structure Of Degs H198pD320A MUTANT MODIFIED BY
DFP And In Complex With Yqf Peptide
Length = 340
Score = 110 bits (276), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 127/250 (50%), Gaps = 18/250 (7%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 41 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE 100
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T T GIIS
Sbjct: 101 ALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS 159
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q +Q DA+IN +NT ++ + G+
Sbjct: 160 ATGRIGLNPTGR--QNFLQTDASINPGNXGGALVNSLGELMGINTLSFDKSNDGETPEGI 217
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIRPYLGIAHDQL---------LEKLMGISGGVIFIAVE 319
+IP + I+D+L++ G++IR Y+GI ++ +++L GI V+
Sbjct: 218 GFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGI---VVNEVSP 274
Query: 320 EGPAGKAGLR 329
+GPA AG++
Sbjct: 275 DGPAANAGIQ 284
>pdb|1L1J|A Chain A, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
pdb|1L1J|B Chain B, Crystal Structure Of The Protease Domain Of An Atp-
Independent Heat Shock Protease Htra
Length = 239
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 65/183 (35%), Positives = 103/183 (56%), Gaps = 2/183 (1%)
Query: 116 GTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKL 175
G+GFI+D +G+I+TN+HV+ GA ++ VT+ D + DA+ +G D+ D+AV+ I A + K
Sbjct: 58 GSGFIFDPEGYILTNYHVVGGADNITVTMLDGSKYDAEYIGGDEELDIAVIKIKASDKKF 117
Query: 176 RSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIISAFGLEPITATGPPIQ-GLIQIDAA 234
+ G S ++IG+ AIG+PLG + T T G++SA G GLIQ DAA
Sbjct: 118 PYLEFGDSDKVKIGEWAIAIGNPLGFQHTVTVGVVSATNRRIPKPDGSGYYVGLIQTDAA 177
Query: 235 INRXXXXXXXXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVKFGKIIRPY 294
IN +NT+I+ +A + +IPI+TV +D ++ K+ + Y
Sbjct: 178 INPGNSGGPLLNIHGEVIGINTAIVNPQEA-VNLGFAIPINTVKKFLDTILTQKKVEKAY 236
Query: 295 LGI 297
LG+
Sbjct: 237 LGV 239
>pdb|1SOT|A Chain A, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|B Chain B, Crystal Structure Of The Degs Stress Sensor
pdb|1SOT|C Chain C, Crystal Structure Of The Degs Stress Sensor
Length = 320
Score = 110 bits (275), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 84/250 (33%), Positives = 126/250 (50%), Gaps = 18/250 (7%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 15 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIXDQRGYIITNKHVINDADQIIVALQDGRVFE 74
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T T GIIS
Sbjct: 75 ALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS 133
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q +Q DA+IN +NT ++ + G+
Sbjct: 134 ATGRIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELXGINTLSFDKSNDGETPEGI 191
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIRPYLGIAHDQL---------LEKLMGISGGVIFIAVE 319
+IP + I D+L++ G++IR Y+GI ++ +++L GI V+
Sbjct: 192 GFAIPFQLATKIXDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGI---VVNEVSP 248
Query: 320 EGPAGKAGLR 329
+GPA AG++
Sbjct: 249 DGPAANAGIQ 258
>pdb|1TE0|A Chain A, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
pdb|1TE0|B Chain B, Structural Analysis Of Degs, A Stress Sensor Of The
Bacterial Periplasm
Length = 318
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 125/250 (50%), Gaps = 18/250 (7%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 20 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE 79
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I A L +IP+ IG V AIG+P T T GIIS
Sbjct: 80 ALLVGSDSLTDLAVLIIKA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS 138
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q +Q DA+IN +NT ++ + G+
Sbjct: 139 ATGRIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGI 196
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIRPYLGIAHDQL---------LEKLMGISGGVIFIAVE 319
+IP + I+D+L++ G++IR Y+GI ++ +++L GI V+
Sbjct: 197 GFAIPFQLATKIMDKLIRDGRVIRGYIGIGGREIAPLHAQGGGIDQLQGI---VVNEVSP 253
Query: 320 EGPAGKAGLR 329
+GPA AG++
Sbjct: 254 DGPAANAGIQ 263
>pdb|3STI|A Chain A, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|B Chain B, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
pdb|3STI|C Chain C, Crystal Structure Of The Protease Domain Of Degq From
Escherichia Coli
Length = 245
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 59/181 (32%), Positives = 94/181 (51%), Gaps = 4/181 (2%)
Query: 113 QATGTGFIWD-EDGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAP 171
+ G+G I + G+++TN+HVI A + + L D DAK++G D +D+A+L I P
Sbjct: 62 EGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGREFDAKLIGSDDQSDIALLQIQNP 121
Query: 172 NHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIISAFGLEPITATGPPIQGLIQI 231
+ KL I + S LR+G A+G+P G T T+GI+SA G + G ++ IQ
Sbjct: 122 S-KLTQIAIADSDKLRVGDFAVAVGNPFGLGQTATSGIVSALGRSGLNLEG--LENFIQT 178
Query: 232 DAAINRXXXXXXXXXXXXXXXXVNTSIITRTDAFCGMACSIPIDTVSGIVDQLVKFGKII 291
DA+INR +NT+I+ G+ +IP + + QL+ FG+I+
Sbjct: 179 DASINRGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQLIDFGEIL 238
Query: 292 R 292
Sbjct: 239 E 239
>pdb|3LGI|A Chain A, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|B Chain B, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
pdb|3LGI|C Chain C, Structure Of The Protease Domain Of Degs (Degs-Deltapdz)
At 1.65 A
Length = 237
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 6/204 (2%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 31 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE 90
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T T GIIS
Sbjct: 91 ALLVGSDSLTDLAVLKINATG-GLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS 149
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q +Q DA+IN +NT ++ + G+
Sbjct: 150 ATGRIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGI 207
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIR 292
+IP + I+D+L++ G++IR
Sbjct: 208 GFAIPFQLATKIMDKLIRDGRVIR 231
>pdb|3LGY|A Chain A, R178a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 6/204 (2%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 41 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE 100
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T T GIIS
Sbjct: 101 ALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS 159
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q +Q DA+IN +NT ++ + G+
Sbjct: 160 ATGAIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGI 217
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIR 292
+IP + I+D+L++ G++IR
Sbjct: 218 GFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|2QGR|A Chain A, Structure Of The R178a Mutant Of Delta Pdz Degs Protease
Length = 243
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 6/204 (2%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 43 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE 102
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T T GIIS
Sbjct: 103 ALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS 161
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q +Q DA+IN +NT ++ + G+
Sbjct: 162 ATGAIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGI 219
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIR 292
+IP + I+D+L++ G++IR
Sbjct: 220 GFAIPFQLATKIMDKLIRDGRVIR 243
>pdb|2QF3|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF3|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 6/204 (2%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 43 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE 102
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T T GIIS
Sbjct: 103 ALLVGSDSLTDLAVLKINATG-GLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS 161
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q +Q DA+IN +NT ++ + G+
Sbjct: 162 ATGRIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGI 219
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIR 292
+IP + I+D+L++ G++IR
Sbjct: 220 GFAIPFQLATKIMDKLIRDGRVIR 243
>pdb|3LH3|A Chain A, Dfp Modified Degs Delta Pdz
pdb|3LH3|B Chain B, Dfp Modified Degs Delta Pdz
pdb|3LH3|C Chain C, Dfp Modified Degs Delta Pdz
pdb|3LH3|D Chain D, Dfp Modified Degs Delta Pdz
pdb|3LH3|E Chain E, Dfp Modified Degs Delta Pdz
pdb|3LH3|F Chain F, Dfp Modified Degs Delta Pdz
pdb|3LH3|G Chain G, Dfp Modified Degs Delta Pdz
pdb|3LH3|H Chain H, Dfp Modified Degs Delta Pdz
pdb|3LH3|I Chain I, Dfp Modified Degs Delta Pdz
Length = 241
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 105/204 (51%), Gaps = 6/204 (2%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 41 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE 100
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T T GIIS
Sbjct: 101 ALLVGSDSLTDLAVLKINATG-GLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS 159
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q +Q DA+IN +NT ++ + G+
Sbjct: 160 ATGRIGLNPTGR--QNFLQTDASINHGNXGGALVNSLGELMGINTLSFDKSNDGETPEGI 217
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIR 292
+IP + I+D+L++ G++IR
Sbjct: 218 GFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|2RCE|A Chain A, Dfp Modified Degs Delta Pdz
pdb|2RCE|B Chain B, Dfp Modified Degs Delta Pdz
pdb|2RCE|C Chain C, Dfp Modified Degs Delta Pdz
pdb|2RCE|D Chain D, Dfp Modified Degs Delta Pdz
pdb|2RCE|E Chain E, Dfp Modified Degs Delta Pdz
pdb|2RCE|F Chain F, Dfp Modified Degs Delta Pdz
pdb|2RCE|G Chain G, Dfp Modified Degs Delta Pdz
pdb|2RCE|H Chain H, Dfp Modified Degs Delta Pdz
pdb|2RCE|I Chain I, Dfp Modified Degs Delta Pdz
Length = 243
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 105/204 (51%), Gaps = 6/204 (2%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 43 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE 102
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T T GIIS
Sbjct: 103 ALLVGSDSLTDLAVLKINATG-GLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS 161
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q +Q DA+IN +NT ++ + G+
Sbjct: 162 ATGRIGLNPTGR--QNFLQTDASINHGNXGGALVNSLGELMGINTLSFDKSNDGETPEGI 219
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIR 292
+IP + I+D+L++ G++IR
Sbjct: 220 GFAIPFQLATKIMDKLIRDGRVIR 243
>pdb|3LGU|A Chain A, Y162a Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 6/204 (2%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 41 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE 100
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T T GIIS
Sbjct: 101 ALLVGSDSLTDLAVLKINATG-GLPTIPINARRVPHIGDVVLAIGNPANLGQTITQGIIS 159
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q +Q DA+IN +NT ++ + G+
Sbjct: 160 ATGRIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGI 217
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIR 292
+IP + I+D+L++ G++IR
Sbjct: 218 GFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|3LGV|A Chain A, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|B Chain B, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|C Chain C, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|D Chain D, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|E Chain E, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|F Chain F, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|G Chain G, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|H Chain H, H198p Mutant Of The Degs-Deltapdz Protease
pdb|3LGV|I Chain I, H198p Mutant Of The Degs-Deltapdz Protease
Length = 241
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 6/204 (2%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 41 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE 100
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T T GIIS
Sbjct: 101 ALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS 159
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q +Q DA+IN +NT ++ + G+
Sbjct: 160 ATGRIGLNPTGR--QNFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGI 217
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIR 292
+IP + I+D+L++ G++IR
Sbjct: 218 GFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|3NZI|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 334
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 143/317 (45%), Gaps = 50/317 (15%)
Query: 84 AGIFEENLPSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVT 143
A + E+ P+VVHI F F+ E P A+G+GFI EDG IVTN HV+ VKV
Sbjct: 17 ADVVEKIAPAVVHIELFRKLPFS-KREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVE 75
Query: 144 LFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKF 203
L + T +AK+ D+ D+A++ ID KL + +G S+ LR G+ V AIG P +
Sbjct: 76 LKNGATYEAKIKDVDEKADIALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQN 134
Query: 204 TCTAGIISAFGLEPITATGPPIQGL-------IQIDAAINRXXXXXXXXXXXXXXXXVNT 256
T T GI+S T G GL IQ DA IN +NT
Sbjct: 135 TVTTGIVST------TQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINT 188
Query: 257 SIITRTDAFCGMACSIPIDTVSGIV----DQLVKFGKII--RPYLGIAHDQLLEKLMG-- 308
+T G++ +IP D + + D+ K GK I + Y+GI L
Sbjct: 189 LKVT-----AGISFAIPSDKIKKFLTESHDRQAK-GKAITKKKYIGIRMMSLTSSKAKEL 242
Query: 309 ----------ISGGVIFIAVEEGPAGKAGLRSTKFGANGKFILGDIIKAVNGEDVSNAND 358
ISG I + + PA GL+ D+I ++NG+ V +AND
Sbjct: 243 KDRHRDFPDVISGAYIIEVIPDTPAEAGGLKEN-----------DVIISINGQSVVSAND 291
Query: 359 LHNILDQCKVGDEVIVR 375
+ +++ + + V+ R
Sbjct: 292 VSDVIKRESTLNMVVRR 308
>pdb|3LGT|A Chain A, Y162aH198P DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 6/204 (2%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 41 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE 100
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T T GIIS
Sbjct: 101 ALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPANLGQTITQGIIS 159
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q +Q DA+IN +NT ++ + G+
Sbjct: 160 ATGRIGLNPTGR--QNFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGI 217
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIR 292
+IP + I+D+L++ G++IR
Sbjct: 218 GFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|3NUM|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 332
Score = 99.8 bits (247), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 98/317 (30%), Positives = 143/317 (45%), Gaps = 50/317 (15%)
Query: 84 AGIFEENLPSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVT 143
A + E+ P+VVHI F F+ E P A+G+GFI EDG IVTN HV+ VKV
Sbjct: 17 ADVVEKIAPAVVHIELFRKLPFS-KREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVE 75
Query: 144 LFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKF 203
L + T +AK+ D+ D+A++ ID KL + +G S+ LR G+ V AIG P +
Sbjct: 76 LKNGATYEAKIKDVDEKADIALIKIDH-QGKLPVLLLGRSSELRPGEFVVAIGSPFSLQN 134
Query: 204 TCTAGIISAFGLEPITATGPPIQGL-------IQIDAAINRXXXXXXXXXXXXXXXXVNT 256
T T GI+S T G GL IQ DA IN +NT
Sbjct: 135 TVTTGIVST------TQRGGKELGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEVIGINT 188
Query: 257 SIITRTDAFCGMACSIPIDTVSGIV----DQLVKFGKII--RPYLGIAHDQLLEKLMG-- 308
+T G++ +IP D + + D+ K GK I + Y+GI L
Sbjct: 189 LKVT-----AGISFAIPSDKIKKFLTESHDRQAK-GKAITKKKYIGIRMMSLTSSKAKEL 242
Query: 309 ----------ISGGVIFIAVEEGPAGKAGLRSTKFGANGKFILGDIIKAVNGEDVSNAND 358
ISG I + + PA GL+ D+I ++NG+ V +AND
Sbjct: 243 KDRHRDFPDVISGAYIIEVIPDTPAEAGGLKEN-----------DVIISINGQSVVSAND 291
Query: 359 LHNILDQCKVGDEVIVR 375
+ +++ + + V+ R
Sbjct: 292 VSDVIKRESTLNMVVRR 308
>pdb|2QF0|A Chain A, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|B Chain B, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|C Chain C, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|D Chain D, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|E Chain E, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|F Chain F, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|G Chain G, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|H Chain H, Structure Of The Delta Pdz Truncation Of The Degs Protease
pdb|2QF0|I Chain I, Structure Of The Delta Pdz Truncation Of The Degs Protease
Length = 243
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/204 (35%), Positives = 104/204 (50%), Gaps = 6/204 (2%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 43 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIXDQRGYIITNKHVINDADQIIVALQDGRVFE 102
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T T GIIS
Sbjct: 103 ALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS 161
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q +Q DA+IN +NT ++ + G+
Sbjct: 162 ATGRIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELXGINTLSFDKSNDGETPEGI 219
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIR 292
+IP + I D+L++ G++IR
Sbjct: 220 GFAIPFQLATKIXDKLIRDGRVIR 243
>pdb|3LGW|A Chain A, H198pT167V DOUBLE MUTANT OF DEGS-Deltapdz Protease
Length = 241
Score = 98.2 bits (243), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 103/204 (50%), Gaps = 6/204 (2%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 41 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE 100
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T GIIS
Sbjct: 101 ALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQVITQGIIS 159
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q +Q DA+IN +NT ++ + G+
Sbjct: 160 ATGRIGLNPTGR--QNFLQTDASINPGNSGGALVNSLGELMGINTLSFDKSNDGETPEGI 217
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIR 292
+IP + I+D+L++ G++IR
Sbjct: 218 GFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|3LH1|A Chain A, Q191a Mutant Of The Degs-Deltapdz
Length = 241
Score = 97.8 bits (242), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 103/204 (50%), Gaps = 6/204 (2%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 41 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE 100
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T T GIIS
Sbjct: 101 ALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS 159
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q + DA+IN +NT ++ + G+
Sbjct: 160 ATGRIGLNPTGR--QNFLATDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGI 217
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIR 292
+IP + I+D+L++ G++IR
Sbjct: 218 GFAIPFQLATKIMDKLIRDGRVIR 241
>pdb|3B8J|A Chain A, Q191a Mutant Of Degs-Deltapdz
Length = 243
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/204 (34%), Positives = 103/204 (50%), Gaps = 6/204 (2%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 43 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE 102
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T T GIIS
Sbjct: 103 ALLVGSDSLTDLAVLKINA-TGGLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS 161
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q + DA+IN +NT ++ + G+
Sbjct: 162 ATGRIGLNPTGR--QNFLATDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGI 219
Query: 269 ACSIPIDTVSGIVDQLVKFGKIIR 292
+IP + I+D+L++ G++IR
Sbjct: 220 GFAIPFQLATKIMDKLIRDGRVIR 243
>pdb|2R3U|A Chain A, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|B Chain B, Crystal Structure Of The Pdz Deletion Mutant Of Degs
pdb|2R3U|C Chain C, Crystal Structure Of The Pdz Deletion Mutant Of Degs
Length = 211
Score = 94.4 bits (233), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 69/200 (34%), Positives = 100/200 (50%), Gaps = 6/200 (3%)
Query: 92 PSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLD 151
P+VV++ N G+NT + + G+G I D+ G+I+TN HVI A + V L D +
Sbjct: 15 PAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDADQIIVALQDGRVFE 74
Query: 152 AKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIIS 211
A +VG D TDLAVL I+A L +IP+ IG V AIG+P T T GIIS
Sbjct: 75 ALLVGSDSLTDLAVLKINATG-GLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIIS 133
Query: 212 AFGLEPITATGPPIQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIITRT---DAFCGM 268
A G + TG Q +Q DA+IN +NT ++ + G+
Sbjct: 134 ATGRIGLNPTGR--QNFLQTDASINHGNSGGALVNSLGELMGINTLSFDKSNDGETPEGI 191
Query: 269 ACSIPIDTVSGIVDQLVKFG 288
+IP + I+D+L++ G
Sbjct: 192 GFAIPFQLATKIMDKLIRDG 211
>pdb|1Y8T|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|1Y8T|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|A Chain A, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|B Chain B, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
pdb|2Z9I|C Chain C, Crystal Structure Of Rv0983 From Mycobacterium
Tuberculosis- Proteolytically Active Form
Length = 324
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 71/203 (34%), Positives = 98/203 (48%), Gaps = 23/203 (11%)
Query: 116 GTGFIWDEDGHIVTNHHVIEGASS---------VKVTLFDKTTLDAKVVGHDQGTDLAVL 166
G+G I +G I+TN+HVI A+ VT D T VVG D +D+AV+
Sbjct: 33 GSGIILSAEGLILTNNHVIAAAAKPPLGSPPPKTTVTFSDGRTAPFTVVGADPTSDIAVV 92
Query: 167 HIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIISAFGLEPITATGPP-- 224
+ + L I +G S++LR+GQ V AIG PLG + T T GI+SA P++ TG
Sbjct: 93 RVQGVSG-LTPISLGSSSDLRVGQPVLAIGSPLGLEGTVTTGIVSALN-RPVSTTGEAGN 150
Query: 225 ---IQGLIQIDAAINRXXXXXXXXXXXXXXXXVNTSIIT----RTDA---FCGMACSIPI 274
+ IQ DAAIN VN++I T DA G+ +IP+
Sbjct: 151 QNTVLDAIQTDAAINPGNSGGALVNXNAQLVGVNSAIATLGADSADAQSGSIGLGFAIPV 210
Query: 275 DTVSGIVDQLVKFGKIIRPYLGI 297
D I D+L+ GK LG+
Sbjct: 211 DQAKRIADELISTGKASHASLGV 233
>pdb|3NWU|A Chain A, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|B Chain B, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
pdb|3NWU|C Chain C, Substrate Induced Remodeling Of The Active Site Regulates
Htra1 Activity
Length = 227
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 97/201 (48%), Gaps = 20/201 (9%)
Query: 84 AGIFEENLPSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVT 143
A + E+ P+VVHI F F+ E P A+G+GFI EDG IVTN HV+ VKV
Sbjct: 17 ADVVEKIAPAVVHIELFRKLPFS-KREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVE 75
Query: 144 LFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKF 203
L + T +AK+ D+ D+A++ ID KL + +G S+ LR G+ V AIG P +
Sbjct: 76 LKNGATYEAKIKDVDEKADIALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQN 134
Query: 204 TCTAGIISAFGLEPITATGPPIQGL-------IQIDAAINRXXXXXXXXXXXXXXXXVNT 256
T T GI+S T G GL IQ DA IN +NT
Sbjct: 135 TVTTGIVST------TQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINT 188
Query: 257 SIITRTDAFCGMACSIPIDTV 277
+T G++ +IP D +
Sbjct: 189 LKVT-----AGISFAIPSDKI 204
>pdb|3TJO|A Chain A, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|B Chain B, Htra1 Catalytic Domain, Mutationally Inactivated
pdb|3TJO|D Chain D, Htra1 Catalytic Domain, Mutationally Inactivated
Length = 231
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 97/201 (48%), Gaps = 20/201 (9%)
Query: 84 AGIFEENLPSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVT 143
A + E+ P+VVHI F F+ E P A+G+GFI EDG IVTN HV+ VKV
Sbjct: 34 ADVVEKIAPAVVHIELFRKLPFS-KREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVE 92
Query: 144 LFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKF 203
L + T +AK+ D+ D+A++ ID KL + +G S+ LR G+ V AIG P +
Sbjct: 93 LKNGATYEAKIKDVDEKADIALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQN 151
Query: 204 TCTAGIISAFGLEPITATGPPIQGL-------IQIDAAINRXXXXXXXXXXXXXXXXVNT 256
T T GI+S T G GL IQ DA IN +NT
Sbjct: 152 TVTTGIVST------TQRGGKELGLRNSDMDYIQTDAIINYGNAGGPLVNLDGEVIGINT 205
Query: 257 SIITRTDAFCGMACSIPIDTV 277
+T G++ +IP D +
Sbjct: 206 LKVT-----AGISFAIPSDKI 221
>pdb|3TJN|A Chain A, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|B Chain B, Htra1 Catalytic Domain, Apo Form
pdb|3TJN|D Chain D, Htra1 Catalytic Domain, Apo Form
Length = 228
Score = 85.9 bits (211), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 71/201 (35%), Positives = 97/201 (48%), Gaps = 20/201 (9%)
Query: 84 AGIFEENLPSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVT 143
A + E+ P+VVHI F F+ E P A+G+GFI EDG IVTN HV+ VKV
Sbjct: 34 ADVVEKIAPAVVHIELFRKLPFS-KREVPVASGSGFIVSEDGLIVTNAHVVTNKHRVKVE 92
Query: 144 LFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKF 203
L + T +AK+ D+ D+A++ ID KL + +G S+ LR G+ V AIG P +
Sbjct: 93 LKNGATYEAKIKDVDEKADIALIKIDHQG-KLPVLLLGRSSELRPGEFVVAIGSPFSLQN 151
Query: 204 TCTAGIISAFGLEPITATGPPIQGL-------IQIDAAINRXXXXXXXXXXXXXXXXVNT 256
T T GI+S T G GL IQ DA IN +NT
Sbjct: 152 TVTTGIVST------TQRGGKELGLRNSDMDYIQTDAIINYGNSGGPLVNLDGEVIGINT 205
Query: 257 SIITRTDAFCGMACSIPIDTV 277
+T G++ +IP D +
Sbjct: 206 LKVT-----AGISFAIPSDKI 221
>pdb|1LCY|A Chain A, Crystal Structure Of The Mitochondrial Serine Protease
Htra2
Length = 325
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/318 (29%), Positives = 143/318 (44%), Gaps = 42/318 (13%)
Query: 84 AGIFEENLPSVVHITNFGMNTFTLTMEYPQATGTGFIWDEDGHIVTNHHVIEGASSVKVT 143
A + E+ P+VV+I + F L E P + G+GF+ DG IVTN HV+ V+V
Sbjct: 18 ADVVEKTAPAVVYIEILDRHPF-LGREVPISNGSGFVVAADGLIVTNAHVVADRRRVRVR 76
Query: 144 LFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVSANLRIGQKVYAIGHPLGRKF 203
L T +A V D D+A L I L ++P+G SA++R G+ V A+G P +
Sbjct: 77 LLSGDTYEAVVTAVDPVADIATLRIQT-KEPLPTLPLGRSADVRQGEFVVAMGSPFALQN 135
Query: 204 TCTAGIISAFGLEPITATGPPIQGL--IQIDAAINRXXXXXXXXXXXXXXXXVNTSIITR 261
T T+GI+S+ P G P + IQ DAAI+ VNT +T
Sbjct: 136 TITSGIVSS-AQRPARDLGLPQTNVEYIQTDAAIDFGNAGGPLVNLDGEVIGVNTMKVT- 193
Query: 262 TDAFCGMACSIPIDTVSGIVDQLVK------FGKIIRPYLGI----------AHDQLLE- 304
G++ +IP D + + + K R Y+G+ A QL E
Sbjct: 194 ----AGISFAIPSDRLREFLHRGEKKNSSSGISGSQRRYIGVMMLTLSPSILAELQLREP 249
Query: 305 KLMGISGGVIFIAVEEG-PAGKAGLRSTKFGANGKFILGDIIKAVNGEDVSNANDLHNIL 363
+ GV+ V G PA +AGLR GD+I A+ + V NA D++
Sbjct: 250 SFPDVQHGVLIHKVILGSPAHRAGLRP-----------GDVILAIGEQMVQNAEDVY--- 295
Query: 364 DQCKVGDEVIVRILRGTQ 381
+ + ++ V+I RG +
Sbjct: 296 EAVRTQSQLAVQIRRGRE 313
>pdb|4FLN|A Chain A, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|B Chain B, Crystal Structure Of Plant Protease Deg2
pdb|4FLN|C Chain C, Crystal Structure Of Plant Protease Deg2
Length = 539
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 63/125 (50%), Gaps = 4/125 (3%)
Query: 114 ATGTGFIWDEDGHIVTNHHVIEGASSVKVTLF-DKTTLDAKVVGHDQGTDLAVLHIDAPN 172
+TG+ F+ DG ++TN H +E + VKV D AKV+ D+A+L +++ +
Sbjct: 74 STGSAFMIG-DGKLLTNAHCVEHDTQVKVKRRGDDRKYVAKVLVRGVDCDIALLSVESED 132
Query: 173 HKLRSIPVGVSANLRIGQKVYAIGHPL-GRKFTCTAGIISAFGLEPITATGPPIQGLIQI 231
+ P+ + R+ V +G+PL G + T G++S + + G IQI
Sbjct: 133 FWKGAEPLRLGHLPRLQDSVTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSSDLLG-IQI 191
Query: 232 DAAIN 236
DAAIN
Sbjct: 192 DAAIN 196
>pdb|3K6Y|A Chain A, Crystal Structure Of Rv3671c Protease From M.
Tuberculosis, Active Form
Length = 237
Score = 46.6 bits (109), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 116 GTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKL 175
GTGF+ D ++TN HV+ G+++V V DK +A VV +D D+A+L +
Sbjct: 60 GTGFVISPD-RVMTNAHVVAGSNNVTVYAGDK-PFEATVVSYDPSVDVAILAVPHLPPPP 117
Query: 176 RSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIISAFGLEPITATGPPIQG 227
+ + G V +G+P G FT T I E I +GP I G
Sbjct: 118 LVF---AAEPAKTGADVVVLGYPGGGNFTATPARIR----EAIRLSGPDIYG 162
>pdb|3K6Z|A Chain A, Crystal Structure Of Rv3671c Protease, Inactive Form
pdb|3K6Z|B Chain B, Crystal Structure Of Rv3671c Protease, Inactive Form
Length = 219
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 116 GTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKL 175
GTGF+ D ++TN HV+ G+++V V DK +A VV +D D+A+L +
Sbjct: 42 GTGFVISPD-RVMTNAHVVAGSNNVTVYAGDK-PFEATVVSYDPSVDVAILAVPHLPPPP 99
Query: 176 RSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIISAFGLEPITATGPPIQG 227
+ + G V +G+P G FT T I E I +GP I G
Sbjct: 100 LVF---AAEPAKTGADVVVLGYPGGGNFTATPARIR----EAIRLSGPDIYG 144
>pdb|3LT3|A Chain A, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
pdb|3LT3|B Chain B, Crystal Structure Of Rv3671c From M. Tuberculosis H37rv,
Ser343ala Mutant, Inactive Form
Length = 217
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 9/112 (8%)
Query: 116 GTGFIWDEDGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKL 175
GTGF+ D ++TN HV+ G+++V V DK +A VV +D D+A+L +
Sbjct: 40 GTGFVISPD-RVMTNAHVVAGSNNVTVYAGDK-PFEATVVSYDPSVDVAILAVPHLPPPP 97
Query: 176 RSIPVGVSANLRIGQKVYAIGHPLGRKFTCTAGIISAFGLEPITATGPPIQG 227
+ + G V +G+P G FT T I E I +GP I G
Sbjct: 98 LVF---AAEPAKTGADVVVLGYPGGGNFTATPARIR----EAIRLSGPDIYG 142
>pdb|2L97|A Chain A, Solution Structure Of Htra Pdz Domain From Streptococcus
Pneumoniae
Length = 134
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 21/123 (17%)
Query: 267 GMACSIPIDTVSGIVDQLVKFGKIIRPYLGIAHDQL-------LEKL---MGISGGVIFI 316
G+ +IP + I++QL K GK+ RP LGI L + +L ++ GVI
Sbjct: 3 GLGFAIPANDAINIIEQLEKNGKVTRPALGIQMVNLSNVSTSDIRRLNIPSNVTSGVIVR 62
Query: 317 AVEEGPAGKAGLRSTKFGANGKFILGDIIKAVNGEDVSNANDLHNILDQCKVGDEVIVRI 376
+V+ + ANG D+I V+ ++++++ DL + L +GD + +
Sbjct: 63 SVQ-----------SNMPANGHLEKYDVITKVDDKEIASSTDLQSALYNHSIGDTIKITY 111
Query: 377 LRG 379
R
Sbjct: 112 YRN 114
>pdb|2KJP|A Chain A, Solution Structure Of Protein Ylbl (Bsu15050) From
Bacillus Subtilis, Northeast Structural Genomics
Consortium Target Sr713a
Length = 91
Score = 31.2 bits (69), Expect = 0.96, Method: Composition-based stats.
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 335 ANGKFILGDIIKAVNGEDVSNANDLHNILDQCKVGDEVIVRILRGTQXXXXXXXXXVEPD 394
A GK +GD I + +G++ +A L + + K GD+V ++I R + PD
Sbjct: 14 AKGKIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPD 73
Query: 395 EAE 397
E +
Sbjct: 74 EPD 76
>pdb|1Z87|A Chain A, Solution Structure Of The Split Ph-Pdz Supramodule Of
Alpha- Syntrophin
Length = 263
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 339 FILGDIIKAVNGEDVSNANDLHNILDQCKVGDEVIVRI 376
+GD I +VNGED+S+A + K G EV++ +
Sbjct: 122 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 159
>pdb|3QGW|A Chain A, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGW|B Chain B, Crystal Structure Of Itk Kinase Bound To An Inhibitor
pdb|3QGY|A Chain A, Crystal Structure Of Itk Inhibitor Complex
pdb|3QGY|B Chain B, Crystal Structure Of Itk Inhibitor Complex
Length = 286
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 69 FVSRQCKLKTDEVETAGIFEENLPSVVHITNFGMNTFTLTMEYPQATGTGF 119
++ C + D + EN V+ +++FGM F L +Y +TGT F
Sbjct: 138 YLEEACVIHRDLAARNCLVGEN--QVIKVSDFGMTRFVLDDQYTSSTGTKF 186
>pdb|1SM2|A Chain A, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SM2|B Chain B, Crystal Structure Of The Phosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|A Chain A, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNU|B Chain B, Crystal Structure Of The Unphosphorylated Interleukin-2
Tyrosine Kinase Catalytic Domain
pdb|1SNX|A Chain A, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
pdb|1SNX|B Chain B, Crystal Structure Of Apo Interleukin-2 Tyrosine Kinase
Catalytic Domain
Length = 264
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 69 FVSRQCKLKTDEVETAGIFEENLPSVVHITNFGMNTFTLTMEYPQATGTGF 119
++ C + D + EN V+ +++FGM F L +Y +TGT F
Sbjct: 116 YLEEACVIHRDLAARNCLVGEN--QVIKVSDFGMTRFVLDDQYTSSTGTKF 164
>pdb|4HCT|A Chain A, Crystal Structure Of Itk In Complex With Compound 52
pdb|4HCU|A Chain A, Crystal Structure Of Itk In Complext With Compound 40
pdb|4HCV|A Chain A, Crystal Structure Of Itk In Complex With Compound 53
Length = 269
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 69 FVSRQCKLKTDEVETAGIFEENLPSVVHITNFGMNTFTLTMEYPQATGTGF 119
++ C + D + EN V+ +++FGM F L +Y +TGT F
Sbjct: 121 YLEEACVIHRDLAARNCLVGEN--QVIKVSDFGMTRFVLDDQYTSSTGTKF 169
>pdb|3V5J|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5J|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 090
pdb|3V5L|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|C Chain C, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V5L|D Chain D, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 542
pdb|3V8T|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8T|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 477
pdb|3V8W|A Chain A, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
pdb|3V8W|B Chain B, Crystal Structure Of Interleukin-2 Inducible T-Cell Kinase
Itk Catalytic Domain With Thienopyrazolylindole
Inhibitor 469
Length = 266
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 69 FVSRQCKLKTDEVETAGIFEENLPSVVHITNFGMNTFTLTMEYPQATGTGF 119
++ C + D + EN V+ +++FGM F L +Y +TGT F
Sbjct: 118 YLEEACVIHRDLAARNCLVGEN--QVIKVSDFGMTRFVLDDQYTSSTGTKF 166
>pdb|3T9T|A Chain A, Crystal Structure Of Btk Mutant (F435t,K596r) Complexed
With Imidazo[1,5-A]quinoxaline
Length = 267
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 69 FVSRQCKLKTDEVETAGIFEENLPSVVHITNFGMNTFTLTMEYPQATGTGF 119
++ C + D + EN V+ +++FGM F L +Y +TGT F
Sbjct: 119 YLEEACVIHRDLAARNCLVGEN--QVIKVSDFGMTRFVLDDQYTSSTGTKF 167
>pdb|3MIY|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MIY|B Chain B, X-Ray Crystal Structure Of Itk Complexed With Sunitinib
pdb|3MJ1|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Ro5191614
pdb|3MJ2|A Chain A, X-Ray Crystal Structure Of Itk Complexed With Inhibitor
Bms-509744
Length = 266
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 94 VVHITNFGMNTFTLTMEYPQATGTGF 119
V+ +++FGM F L +Y +TGT F
Sbjct: 141 VIKVSDFGMTRFVLDDQYTSSTGTKF 166
>pdb|2JOA|A Chain A, Htra1 Bound To An Optimized Peptide: Nmr Assignment Of Pdz
Domain And Ligand Resonances
Length = 105
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 309 ISGGVIFIAVEEGPAGKAGLRSTKFGANGKFILGDIIKAVNGEDVSNANDLHNILDQCKV 368
ISG I + + PA GL+ D+I ++NG+ V +AND+ +++ +
Sbjct: 34 ISGAYIIEVIPDTPAEAGGLKEN-----------DVIISINGQSVVSANDVSDVIKREST 82
Query: 369 GDEVIVR 375
+ V+ R
Sbjct: 83 LNMVVRR 89
>pdb|2QG1|A Chain A, Crystal Structure Of The 11th Pdz Domain Of Mpdz (Mupp1)
Length = 92
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 335 ANGKFILGDIIKAVNGEDVSNA 356
A+G+ + GD I VNGEDV NA
Sbjct: 44 ADGRLMQGDQILMVNGEDVRNA 65
>pdb|1Z86|A Chain A, Solution Structure Of The Pdz Domain Of Alpha-Syntrophin
Length = 87
Score = 28.9 bits (63), Expect = 4.8, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 339 FILGDIIKAVNGEDVSNANDLHNILDQCKVGDEVIVRI 376
+GD I +VNGED+S+A + K G EV++ +
Sbjct: 45 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 82
>pdb|2PDZ|A Chain A, Solution Structure Of The Syntrophin Pdz Domain In Complex
With The Peptide Gvkeslv, Nmr, 15 Structures
Length = 86
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 339 FILGDIIKAVNGEDVSNANDLHNILDQCKVGDEVIVRI 376
+GD I +VNGED+S+A + K G EV++ +
Sbjct: 45 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 82
>pdb|1QAV|A Chain A, Unexpected Modes Of Pdz Domain Scaffolding Revealed By
Structure Of Nnos-Syntrophin Complex
Length = 90
Score = 28.9 bits (63), Expect = 5.1, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 339 FILGDIIKAVNGEDVSNANDLHNILDQCKVGDEVIVRI 376
+GD I +VNGED+S+A + K G EV++ +
Sbjct: 49 LFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVVLEV 86
>pdb|2A1N|A Chain A, Crystal Structure Of Ferrous Dioxygen Complex Of D251n
Cytochrome P450cam
pdb|2A1N|B Chain B, Crystal Structure Of Ferrous Dioxygen Complex Of D251n
Cytochrome P450cam
Length = 415
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 124 DGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVS 183
DG I+T+ + G V++ D+ L + G D+ + A +H+D K+ G
Sbjct: 298 DGRILTSDYEFHG---VQLKKGDQILLPQMLSGLDERENAAPMHVDFSRQKVSHTTFGHG 354
Query: 184 ANLRIGQKV 192
++L +GQ +
Sbjct: 355 SHLCLGQHL 363
>pdb|2A1M|A Chain A, Crystal Structure Of Ferrous Dioxygen Complex Of Wild-Type
Cytochrome P450cam
pdb|2A1M|B Chain B, Crystal Structure Of Ferrous Dioxygen Complex Of Wild-Type
Cytochrome P450cam
Length = 415
Score = 28.9 bits (63), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 124 DGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVS 183
DG I+T+ + G V++ D+ L + G D+ + A +H+D K+ G
Sbjct: 298 DGRILTSDYEFHG---VQLKKGDQILLPQMLSGLDERENAAPMHVDFSRQKVSHTTFGHG 354
Query: 184 ANLRIGQKV 192
++L +GQ +
Sbjct: 355 SHLCLGQHL 363
>pdb|2A1O|A Chain A, Crystal Structure Of Ferrous Dioxygen Complex Of T252a
Cytochrome P450cam
pdb|2A1O|B Chain B, Crystal Structure Of Ferrous Dioxygen Complex Of T252a
Cytochrome P450cam
Length = 415
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 124 DGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVS 183
DG I+T+ + G V++ D+ L + G D+ + A +H+D K+ G
Sbjct: 298 DGRILTSDYEFHG---VQLKKGDQILLPQMLSGLDERENAAPMHVDFSRQKVSHTTFGHG 354
Query: 184 ANLRIGQKV 192
++L +GQ +
Sbjct: 355 SHLCLGQHL 363
>pdb|2GQX|A Chain A, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FL244AV247LC334A) WITH PENTACHLOROBENZENE
pdb|2GQX|B Chain B, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FL244AV247LC334A) WITH PENTACHLOROBENZENE
pdb|2GR6|A Chain A, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FL244AV247LC334A)
pdb|2GR6|B Chain B, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FL244AV247LC334A)
Length = 405
Score = 28.9 bits (63), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 124 DGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVS 183
DG I+T+ + G V++ D+ L + G D+ + A +H+D K+ G
Sbjct: 288 DGRILTSDYEFHG---VQLKKGDQILLPQMLSGLDERENAAPMHVDFSRQKVSHTTFGHG 344
Query: 184 ANLRIGQKV 192
++L +GQ +
Sbjct: 345 SHLCLGQHL 353
>pdb|1QMQ|A Chain A, Optical Detection Of Cytochrome P450 By Sensitizer-Linked
Substrates
pdb|1GJM|A Chain A, Covalent Attachment Of An Electroactive Sulphydryl Reagent
In The Active Site Of Cytochrome P450cam
pdb|1K2O|A Chain A, Cytochrome P450cam With Bound
Bis(2,2'-Bipyridine)-(5-Methyl-2-2'-
Bipyridine)-C2-Adamantane Ruthenium (Ii)
pdb|1K2O|B Chain B, Cytochrome P450cam With Bound
Bis(2,2'-Bipyridine)-(5-Methyl-2-2'-
Bipyridine)-C2-Adamantane Ruthenium (Ii)
pdb|1T87|A Chain A, Crystal Structure Of The Ferrous Co-Bound Cytochrome
P450cam (C334a)
pdb|1T87|B Chain B, Crystal Structure Of The Ferrous Co-Bound Cytochrome
P450cam (C334a)
pdb|1T88|A Chain A, Crystal Structure Of The Ferrous Cytochrome P450cam
(C334a)
pdb|1T88|B Chain B, Crystal Structure Of The Ferrous Cytochrome P450cam
(C334a)
pdb|3L61|A Chain A, Crystal Structure Of Substrate-Free P450cam At 200 Mm [k+]
pdb|3L62|A Chain A, Crystal Structure Of Substrate-Free P450cam At Low [k+]
pdb|3L63|A Chain A, Crystal Structure Of Camphor-Bound P450cam At Low [k+]
pdb|3OIA|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac1-C8gluetg-Bio
pdb|3OL5|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized With
A Tethered Substrate Analog 3oh-Adac1-C8-Dans
pdb|3P6M|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac1-C8-Dans
pdb|3P6N|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac1-C8-Dans
pdb|3P6O|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac1-Etg-Dans
pdb|3P6P|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog Adac1-C6-Bio
pdb|3P6Q|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac2-Etg-Boc
pdb|3P6R|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
3oh-Adac1-Etg-Boc
pdb|3P6S|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac2-C8-Dans
pdb|3P6T|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac2-C8-Dans
pdb|3P6U|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac3-C6-Dans
pdb|3P6V|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
3et-Adac1-Etg-Boc
pdb|3P6W|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac3-Etg-Boc
pdb|3P6X|A Chain A, Crystal Structure Of Cytochrome P450cam Crystallized In
The Presence Of A Tethered Substrate Analog
Adac3-C8-Dans
pdb|4G3R|A Chain A, Crystal Structure Of Nitrosyl Cytochrome P450cam
pdb|4G3R|B Chain B, Crystal Structure Of Nitrosyl Cytochrome P450cam
Length = 414
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 124 DGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVS 183
DG I+T+ + G V++ D+ L + G D+ + A +H+D K+ G
Sbjct: 297 DGRILTSDYEFHG---VQLKKGDQILLPQMLSGLDERENAAPMHVDFSRQKVSHTTFGHG 353
Query: 184 ANLRIGQKV 192
++L +GQ +
Sbjct: 354 SHLCLGQHL 362
>pdb|2YTW|A Chain A, Solution Structure Of The Pdz-Domain Of Human Protease
Htra 1 Precursor
Length = 118
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 11/67 (16%)
Query: 309 ISGGVIFIAVEEGPAGKAGLRSTKFGANGKFILGDIIKAVNGEDVSNANDLHNILDQCKV 368
ISG I + + PA GL+ D+I ++NG+ V +AND+ +++ +
Sbjct: 47 ISGAYIIEVIPDTPAEAGGLKEN-----------DVIISINGQSVVSANDVSDVIKREST 95
Query: 369 GDEVIVR 375
+ V+ R
Sbjct: 96 LNMVVRR 102
>pdb|1J51|A Chain A, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FV247LC334A) WITH 1,3,5-Trichlorobenzene
pdb|1J51|B Chain B, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FV247LC334A) WITH 1,3,5-Trichlorobenzene
pdb|1J51|C Chain C, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FV247LC334A) WITH 1,3,5-Trichlorobenzene
pdb|1J51|D Chain D, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FV247LC334A) WITH 1,3,5-Trichlorobenzene
pdb|1MPW|A Chain A, Molecular Recognition In (+)-a-pinene Oxidation By
Cytochrome P450cam
pdb|1MPW|B Chain B, Molecular Recognition In (+)-a-pinene Oxidation By
Cytochrome P450cam
pdb|2FRZ|A Chain A, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FV247LC334A)
pdb|2FRZ|B Chain B, Crystal Structure Of Cytochrome P450cam Mutant
(F87wY96FV247LC334A)
Length = 414
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 124 DGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVS 183
DG I+T+ + G V++ D+ L + G D+ + A +H+D K+ G
Sbjct: 297 DGRILTSDYEFHG---VQLKKGDQILLPQMLSGLDERENAAPMHVDFSRQKVSHTTFGHG 353
Query: 184 ANLRIGQKV 192
++L +GQ +
Sbjct: 354 SHLCLGQHL 362
>pdb|2H7R|A Chain A, L244a Mutant Of Cytochrome P450cam Complexed With
Imidazole
pdb|2H7S|A Chain A, L244a Mutant Of Cytochrome P450cam
pdb|2H7S|C Chain C, L244a Mutant Of Cytochrome P450cam
Length = 414
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 124 DGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVS 183
DG I+T+ + G V++ D+ L + G D+ + A +H+D K+ G
Sbjct: 297 DGRILTSDYEFHG---VQLKKGDQILLPQMLSGLDERENAAPMHVDFSRQKVSHTTFGHG 353
Query: 184 ANLRIGQKV 192
++L +GQ +
Sbjct: 354 SHLCLGQHL 362
>pdb|4EK1|A Chain A, Crystal Structure Of Electron-Spin Labeled Cytochrome
P450cam
pdb|4EK1|B Chain B, Crystal Structure Of Electron-Spin Labeled Cytochrome
P450cam
Length = 414
Score = 28.5 bits (62), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 124 DGHIVTNHHVIEGASSVKVTLFDKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVGVS 183
DG I+T+ + G V++ D+ L + G D+ + A +H+D K+ G
Sbjct: 297 DGRILTSDYEFHG---VQLKKGDQILLPQMLSGLDERENAAPMHVDFSRQKVSHTTFGHG 353
Query: 184 ANLRIGQKV 192
++L +GQ +
Sbjct: 354 SHLCLGQHL 362
>pdb|1EFA|A Chain A, Crystal Structure Of The Lac Repressor Dimer Bound To
Operator And The Anti-Inducer Onpf
pdb|1EFA|B Chain B, Crystal Structure Of The Lac Repressor Dimer Bound To
Operator And The Anti-Inducer Onpf
pdb|1EFA|C Chain C, Crystal Structure Of The Lac Repressor Dimer Bound To
Operator And The Anti-Inducer Onpf
pdb|1JWL|A Chain A, Structure Of The Dimeric Lac RepressorOPERATOR O1ONPF
Complex
pdb|1JWL|B Chain B, Structure Of The Dimeric Lac RepressorOPERATOR O1ONPF
Complex
pdb|1JWL|C Chain C, Structure Of The Dimeric Lac RepressorOPERATOR O1ONPF
Complex
Length = 333
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 146 DKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVG----VSANLRIG 189
D+T +++ + H+ GT L V H+ A H+ ++ G VSA LR+
Sbjct: 152 DQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLA 199
>pdb|1LBI|A Chain A, Lac Repressor
pdb|1LBI|B Chain B, Lac Repressor
pdb|1LBI|C Chain C, Lac Repressor
pdb|1LBI|D Chain D, Lac Repressor
pdb|1LBH|A Chain A, Intact Lactose Operon Repressor With Gratuitous Inducer
Iptg
pdb|1LBH|B Chain B, Intact Lactose Operon Repressor With Gratuitous Inducer
Iptg
pdb|1LBH|C Chain C, Intact Lactose Operon Repressor With Gratuitous Inducer
Iptg
pdb|1LBH|D Chain D, Intact Lactose Operon Repressor With Gratuitous Inducer
Iptg
pdb|1LBG|A Chain A, Lactose Operon Repressor Bound To 21-Base Pair Symmetric
Operator Dna, Alpha Carbons Only
pdb|1LBG|B Chain B, Lactose Operon Repressor Bound To 21-Base Pair Symmetric
Operator Dna, Alpha Carbons Only
pdb|1LBG|C Chain C, Lactose Operon Repressor Bound To 21-Base Pair Symmetric
Operator Dna, Alpha Carbons Only
pdb|1LBG|D Chain D, Lactose Operon Repressor Bound To 21-Base Pair Symmetric
Operator Dna, Alpha Carbons Only
Length = 360
Score = 28.1 bits (61), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
Query: 146 DKTTLDAKVVGHDQGTDLAVLHIDAPNHKLRSIPVG----VSANLRIG 189
D+T +++ + H+ GT L V H+ A H+ ++ G VSA LR+
Sbjct: 152 DQTPINSIIFSHEDGTRLGVEHLVALGHQQIALLAGPLSSVSARLRLA 199
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,499,341
Number of Sequences: 62578
Number of extensions: 411082
Number of successful extensions: 1087
Number of sequences better than 100.0: 100
Number of HSP's better than 100.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 919
Number of HSP's gapped (non-prelim): 109
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)