BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015961
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2V6F|A Chain A, Structure Of Progesterone 5beta-Reductase From Digitalis
Lanata
pdb|2V6G|A Chain A, Structure Of Progesterone 5beta-reductase From Digitalis
Lanata In Complex With Nadp
Length = 364
Score = 553 bits (1424), Expect = e-158, Method: Compositional matrix adjust.
Identities = 264/372 (70%), Positives = 299/372 (80%), Gaps = 8/372 (2%)
Query: 26 QSVALIVGVTGIVGNSLAEILPLPDTPGGPWKVYGVARRPKPNWNADHLVEYVQCDVSDP 85
SVALIVGVTGI+GNSLAEILPL DTPGGPWKVYGVARR +P W+ D+ + YVQCD+SDP
Sbjct: 1 SSVALIVGVTGIIGNSLAEILPLADTPGGPWKVYGVARRTRPAWHEDNPINYVQCDISDP 60
Query: 86 EETQAKLSQLTDVTHIFYVTWTNRSTEAENCKINGSMFRNVLRAVIPNAPNLRHVCLQTG 145
+++QAKLS LTDVTH+FYVTW NRSTE ENC+ N MFRNVL AVIPN PNL+H+ LQTG
Sbjct: 61 DDSQAKLSPLTDVTHVFYVTWANRSTEQENCEANSKMFRNVLDAVIPNCPNLKHISLQTG 120
Query: 146 TKHYLGPFEAFGKIKPYDPPFTEDMPRLDAPNFYYTLEDILFEEVEKKEELSWSVHRPDT 205
KHY+GPFE++GKI+ +DPP+TED+PRL NFYY LEDI+ EEVEKKE L+WSVHRP
Sbjct: 121 RKHYMGPFESYGKIESHDPPYTEDLPRLKYMNFYYDLEDIMLEEVEKKEGLTWSVHRPGN 180
Query: 206 IFGFSPYSLMNLVGALCVYAAVCKHEGIPLRFPGTKAAWECYSIASDADLIAEHQIWAAV 265
IFGFSPYS+MNLVG LCVYAA+CKHEG LRF G KAAW+ YS SDADLIAEH IWAAV
Sbjct: 181 IFGFSPYSMMNLVGTLCVYAAICKHEGKVLRFTGCKAAWDGYSDCSDADLIAEHHIWAAV 240
Query: 266 DPYAKNEAFNCNNGDVFKWKHLWKVLAEQFXXXXXXXXXXXXXXXXXTQRVKLAEFMKGK 325
DPYAKNEAFN +NGDVFKWKH WKVLAEQF +KL + MKGK
Sbjct: 241 DPYAKNEAFNVSNGDVFKWKHFWKVLAEQFGVECGEYEEGV--------DLKLQDLMKGK 292
Query: 326 EGVWEEIVRENQLQPTRLDEVGAWWFVDLVLTGEAKLASMNKSKEHGFSGFRNSKNSFIT 385
E VWEEIVREN L PT+L +VG WWF D++L E L SMNKSKEHGF GFRNSKN+FI+
Sbjct: 293 EPVWEEIVRENGLTPTKLKDVGIWWFGDVILGNECFLDSMNKSKEHGFLGFRNSKNAFIS 352
Query: 386 WIDKVKGFKIVP 397
WIDK K +KIVP
Sbjct: 353 WIDKAKAYKIVP 364
>pdb|1DB3|A Chain A, E.Coli Gdp-Mannose 4,6-Dehydratase
Length = 372
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 54/137 (39%), Gaps = 32/137 (23%)
Query: 28 VALIVGVTGIVGNSLAEILPLPDTPGGPWKVYGVARRPKPNWNADHLVEYVQCDVSDPEE 87
VALI GVTG G+ LAE L ++V+G+ RR ++N + + Q DP
Sbjct: 3 VALITGVTGQDGSYLAEFLLEKG-----YEVHGIKRRAS-SFNTERVDHIYQ----DPHT 52
Query: 88 TQAKLSQLTDVTHIFYVTWTNRSTEAENCKINGSMFRNVLRAVIP----NAPNLRHVCLQ 143
K H+ Y ++ S +LR V P N + HV +
Sbjct: 53 CNPKF-------HLHYGDLSDTSN-----------LTRILREVQPDEVYNLGAMSHVAVS 94
Query: 144 TGTKHYLGPFEAFGKIK 160
+ Y +A G ++
Sbjct: 95 FESPEYTADVDAMGTLR 111
>pdb|1N7G|A Chain A, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|B Chain B, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|C Chain C, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7G|D Chain D, Crystal Structure Of The Gdp-mannose 4,6-dehydratase
Ternary Complex With Nadph And Gdp-rhamnose.
pdb|1N7H|A Chain A, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
pdb|1N7H|B Chain B, Crystal Structure Of Gdp-Mannose 4,6-Dehydratase Ternary
Complex With Nadph And Gdp
Length = 381
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 9/78 (11%)
Query: 26 QSVALIVGVTGIVGNSLAEILPLPDTPGGPWKVYGVARRPKPNWNADHLVEYVQCDVSDP 85
+ +ALI G+TG G+ L E L G ++V+G+ RR N+N + ++ D +
Sbjct: 28 RKIALITGITGQDGSYLTEFL-----LGKGYEVHGLIRR-SSNFNTQR-INHIYIDPHNV 80
Query: 86 EETQAKL--SQLTDVTHI 101
+ KL + LTD + +
Sbjct: 81 NKALMKLHYADLTDASSL 98
>pdb|1T2A|A Chain A, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|B Chain B, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|C Chain C, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
pdb|1T2A|D Chain D, Crystal Structure Of Human Gdp-D-Mannose 4,6-Dehydratase
Length = 375
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 13/94 (13%)
Query: 26 QSVALIVGVTGIVGNSLAEILPLPDTPGGPWKVYGVARRPKP--NWNADHLVEYVQCDVS 83
++VALI G+TG G+ LAE L ++V+G+ RR +HL + Q +
Sbjct: 24 RNVALITGITGQDGSYLAEFLLEKG-----YEVHGIVRRSSSFNTGRIEHLYKNPQAHI- 77
Query: 84 DPEETQAKL--SQLTDVTHIFYVTWTNRSTEAEN 115
E KL LTD T + + + TE N
Sbjct: 78 ---EGNMKLHYGDLTDSTCLVKIINEVKPTEIYN 108
>pdb|2C9W|A Chain A, Crystal Structure Of Socs-2 In Complex With Elongin-B And
Elongin-C At 1.9a Resolution
Length = 169
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/61 (26%), Positives = 29/61 (47%), Gaps = 2/61 (3%)
Query: 89 QAKLSQLTDVTHI--FYVTWTNRSTEAENCKINGSMFRNVLRAVIPNAPNLRHVCLQTGT 146
++KL Q V H+ +YV NG++ + + + +AP+L+H+C T
Sbjct: 84 KSKLKQFDSVVHLIDYYVQMCKDKRTGPEAPRNGTVHLYLTKPLYTSAPSLQHLCRLTIN 143
Query: 147 K 147
K
Sbjct: 144 K 144
>pdb|3F2B|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mg And Zn
pdb|3F2C|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp And Mn
pdb|3F2D|A Chain A, Dna Polymerase Polc From Geobacillus Kaustophilus Complex
With Dna, Dgtp, Mn And Zn
Length = 1041
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 122 MFRNVLRAVIPNAPNLRHVCLQTGTKHYLGPFEA-FGKIKPYDPPFTEDMPRLDAPNFYY 180
M +N++R+++ L + TG HYL P + + KI + + R + P+ Y+
Sbjct: 305 MIKNIIRSIVALGEKLDIPVVATGNVHYLNPEDKIYRKILIHSQGGANPLNRHELPDVYF 364
>pdb|2LQN|A Chain A, Solution Structure Of Crkl
Length = 303
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 20/45 (44%)
Query: 20 EPARSYQSVALIVGVTGIVGNSLAEILPLPDTPGGPWKVYGVARR 64
EPA +Y + + G+ A I PLP T GP + +R
Sbjct: 202 EPAHAYAQPQTTTPLPAVSGSPGAAITPLPSTQNGPVFAKAIQKR 246
>pdb|1MCW|W Chain W, Three-Dimensional Structure Of A Hybrid Light Chain Dimer.
Protein Engineering Of A Binding Cavity
Length = 216
Score = 28.1 bits (61), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 221 LCVYAAVCKHEGIPLRFPGTKA 242
L +YA + GIPLRF G+K+
Sbjct: 48 LLIYAVTFRPSGIPLRFSGSKS 69
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,805,299
Number of Sequences: 62578
Number of extensions: 550087
Number of successful extensions: 1363
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1358
Number of HSP's gapped (non-prelim): 12
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)