Query 015962
Match_columns 397
No_of_seqs 298 out of 1258
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 02:31:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015962.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015962hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03193 beta-1,3-galactosyltr 100.0 2E-109 4E-114 831.0 34.4 397 1-397 1-408 (408)
2 KOG2288 Galactosyltransferases 100.0 9.8E-72 2.1E-76 523.4 16.7 265 125-397 8-273 (274)
3 PLN03133 beta-1,3-galactosyltr 100.0 3.4E-54 7.4E-59 454.1 22.4 236 124-396 381-624 (636)
4 KOG2287 Galactosyltransferases 100.0 9.6E-53 2.1E-57 421.8 21.6 239 127-395 94-336 (349)
5 PF01762 Galactosyl_T: Galacto 100.0 2.3E-48 5.1E-53 359.1 17.3 191 142-340 1-195 (195)
6 PTZ00210 UDP-GlcNAc-dependent 100.0 4.1E-32 9E-37 269.7 18.4 193 122-333 74-307 (382)
7 PF13334 DUF4094: Domain of un 99.9 5E-27 1.1E-31 193.9 7.5 85 17-102 1-94 (95)
8 PF02434 Fringe: Fringe-like; 99.8 5.5E-19 1.2E-23 170.4 12.5 193 128-347 6-210 (252)
9 KOG2246 Galactosyltransferases 99.7 2.6E-16 5.7E-21 158.8 15.2 169 125-340 88-269 (364)
10 PLN03153 hypothetical protein; 99.1 4E-10 8.7E-15 117.0 13.3 181 127-345 121-318 (537)
11 KOG3708 Uncharacterized conser 97.5 0.00096 2.1E-08 69.6 11.2 195 129-393 27-240 (681)
12 PF01755 Glyco_transf_25: Glyc 95.4 0.33 7.1E-06 44.5 12.7 93 132-241 4-101 (200)
13 TIGR03472 HpnI hopanoid biosyn 94.4 1.3 2.8E-05 44.9 15.1 161 166-335 70-241 (373)
14 PF13641 Glyco_tranf_2_3: Glyc 94.1 0.98 2.1E-05 41.4 12.3 114 216-335 77-198 (228)
15 TIGR03469 HonB hopene-associat 93.8 2.4 5.3E-05 43.2 15.6 160 166-333 70-248 (384)
16 cd04192 GT_2_like_e Subfamily 93.5 2.2 4.8E-05 38.6 13.5 165 167-339 29-203 (229)
17 cd02525 Succinoglycan_BP_ExoA 92.3 8 0.00017 35.4 15.5 160 165-336 30-197 (249)
18 cd02510 pp-GalNAc-T pp-GalNAc- 91.2 13 0.00028 36.0 16.3 124 217-340 75-220 (299)
19 PF13506 Glyco_transf_21: Glyc 90.8 0.4 8.6E-06 43.8 5.0 123 211-340 17-147 (175)
20 PF00535 Glycos_transf_2: Glyc 90.8 4.5 9.7E-05 34.0 11.3 135 166-308 27-168 (169)
21 cd02520 Glucosylceramide_synth 90.5 13 0.00028 33.5 16.1 134 166-335 30-165 (196)
22 PRK11204 N-glycosyltransferase 88.4 29 0.00063 35.3 17.1 148 182-340 96-255 (420)
23 cd04196 GT_2_like_d Subfamily 87.8 19 0.00041 32.0 13.7 177 145-339 11-197 (214)
24 cd06421 CESA_CelA_like CESA_Ce 87.8 19 0.00042 32.6 13.9 120 217-342 76-208 (234)
25 cd04186 GT_2_like_c Subfamily 87.1 17 0.00037 30.6 14.0 79 224-334 73-152 (166)
26 cd06423 CESA_like CESA_like is 86.2 15 0.00033 30.5 11.5 95 215-309 68-170 (180)
27 cd04187 DPM1_like_bac Bacteria 85.8 9.9 0.00021 33.4 10.5 135 165-310 28-164 (181)
28 cd04185 GT_2_like_b Subfamily 85.7 26 0.00055 31.3 13.5 92 213-333 68-160 (202)
29 cd06532 Glyco_transf_25 Glycos 85.4 7.4 0.00016 33.4 9.2 116 133-314 3-119 (128)
30 cd06439 CESA_like_1 CESA_like_ 84.5 32 0.0007 31.8 13.9 117 217-340 101-224 (251)
31 PF13632 Glyco_trans_2_3: Glyc 82.0 4.3 9.4E-05 36.3 6.6 117 228-348 1-127 (193)
32 PF04646 DUF604: Protein of un 81.9 2.2 4.7E-05 41.6 4.7 51 294-344 12-66 (255)
33 cd06433 GT_2_WfgS_like WfgS an 78.9 15 0.00032 32.1 8.9 113 216-335 66-182 (202)
34 cd06435 CESA_NdvC_like NdvC_li 76.8 60 0.0013 29.6 12.7 114 216-335 73-197 (236)
35 cd04179 DPM_DPG-synthase_like 75.1 28 0.0006 30.3 9.5 132 166-309 28-167 (185)
36 cd02526 GT2_RfbF_like RfbF is 74.9 66 0.0014 29.2 12.8 127 213-342 64-201 (237)
37 cd06420 GT2_Chondriotin_Pol_N 74.3 19 0.00041 31.4 8.2 96 217-333 71-166 (182)
38 cd04195 GT2_AmsE_like GT2_AmsE 72.4 69 0.0015 28.3 12.7 114 217-339 72-195 (201)
39 PRK10714 undecaprenyl phosphat 70.9 1.1E+02 0.0024 30.5 13.7 135 165-310 37-174 (325)
40 COG1216 Predicted glycosyltran 70.0 31 0.00067 33.8 9.4 137 194-333 55-206 (305)
41 COG1215 Glycosyltransferases, 66.4 1.5E+02 0.0033 29.9 14.6 164 167-340 85-260 (439)
42 PF10111 Glyco_tranf_2_2: Glyc 61.0 1.6E+02 0.0035 28.4 14.4 165 164-336 32-211 (281)
43 PRK14583 hmsR N-glycosyltransf 58.0 2.4E+02 0.0051 29.3 18.8 161 166-339 104-275 (444)
44 PHA01631 hypothetical protein 57.9 23 0.00049 32.6 5.3 92 194-311 39-133 (176)
45 cd04184 GT2_RfbC_Mx_like Myxoc 57.6 1.3E+02 0.0029 26.4 16.5 111 216-335 74-189 (202)
46 cd06434 GT2_HAS Hyaluronan syn 55.4 1.1E+02 0.0023 27.8 9.6 153 167-334 29-200 (235)
47 cd02522 GT_2_like_a GT_2_like_ 55.1 90 0.0019 27.9 9.0 105 218-334 65-174 (221)
48 cd02514 GT13_GLCNAC-TI GT13_GL 54.1 50 0.0011 33.6 7.7 82 215-308 87-174 (334)
49 cd06442 DPM1_like DPM1_like re 53.9 1.6E+02 0.0036 26.3 12.5 85 224-309 77-167 (224)
50 TIGR01556 rhamnosyltran L-rham 53.8 86 0.0019 29.9 9.1 114 216-332 65-186 (281)
51 cd04188 DPG_synthase DPG_synth 50.0 1.9E+02 0.0042 25.9 10.6 89 165-261 29-119 (211)
52 cd06437 CESA_CaSu_A2 Cellulose 46.0 2.3E+02 0.0051 25.7 15.2 118 217-340 79-208 (232)
53 PLN02726 dolichyl-phosphate be 42.1 2.9E+02 0.0062 25.6 15.8 156 166-338 40-211 (243)
54 PF03071 GNT-I: GNT-I family; 41.0 2.2E+02 0.0047 30.2 10.1 87 213-311 175-272 (434)
55 COG4092 Predicted glycosyltran 36.7 1.4E+02 0.0031 29.7 7.4 80 164-248 36-117 (346)
56 cd00761 Glyco_tranf_GTA_type G 35.9 2.2E+02 0.0048 22.6 11.8 34 216-249 68-101 (156)
57 KOG2547 Ceramide glucosyltrans 35.7 42 0.00091 34.8 3.8 99 166-270 114-213 (431)
58 cd04191 Glucan_BSP_ModH Glucan 34.5 2.4E+02 0.0053 27.1 8.8 134 199-334 68-218 (254)
59 PRK05454 glucosyltransferase M 32.9 4.8E+02 0.01 29.3 11.8 202 125-339 121-350 (691)
60 PF06305 DUF1049: Protein of u 32.6 63 0.0014 24.2 3.6 18 20-37 19-36 (68)
61 TIGR03030 CelA cellulose synth 29.6 8.3E+02 0.018 27.3 15.4 133 208-344 212-357 (713)
62 PF04508 Pox_A_type_inc: Viral 27.7 71 0.0015 19.8 2.4 19 83-101 3-21 (23)
63 PF04666 Glyco_transf_54: N-Ac 27.5 3.3E+02 0.0072 27.2 8.5 120 125-247 49-191 (297)
64 PF09258 Glyco_transf_64: Glyc 26.8 69 0.0015 30.9 3.5 101 224-330 74-180 (247)
65 cd06427 CESA_like_2 CESA_like_ 25.6 5.3E+02 0.011 23.7 12.8 121 216-339 75-206 (241)
66 PF03452 Anp1: Anp1; InterPro 25.1 4.3E+02 0.0094 26.1 8.7 96 164-260 54-180 (269)
67 cd06913 beta3GnTL1_like Beta 1 23.6 5.4E+02 0.012 23.1 11.6 43 218-260 77-119 (219)
68 cd06438 EpsO_like EpsO protein 23.5 5E+02 0.011 22.6 10.7 89 215-307 70-169 (183)
69 PF03742 PetN: PetN ; InterPr 22.6 77 0.0017 20.8 1.9 23 16-38 4-26 (29)
70 TIGR03111 glyc2_xrt_Gpos1 puta 22.3 8.8E+02 0.019 25.1 14.1 125 216-343 122-265 (439)
71 PF06072 Herpes_US9: Alphaherp 21.5 81 0.0018 24.1 2.2 16 21-36 42-57 (60)
72 PF13704 Glyco_tranf_2_4: Glyc 20.9 4.1E+02 0.009 20.7 7.0 48 194-242 40-88 (97)
No 1
>PLN03193 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=1.8e-109 Score=830.95 Aligned_cols=397 Identities=70% Similarity=1.207 Sum_probs=367.7
Q ss_pred CCccccCCCcccCCCCchhHHHHHHHHHHhhHhhhcccCCCCCcCccccccccC--------ccCcchhh---hhccccc
Q 015962 1 MSFKSTGGEFASRNLIPRKWALFLCACSFCAGMSFTNRMWMMPESKGVARISKT--------EEIENPEL---KAVKHES 69 (397)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~---~~~~~~~ 69 (397)
||.|+||+++++++.||+||+++||++|||+|++||||||..||+.+..+...+ .+||++|+ |..++++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~ 80 (408)
T PLN03193 1 MSTKSRGEEYSSRSVVSRKWTLLLCLGCFCAGMLFTDRMWTIPESKGISRTTVTEAERLKLVSEGCDPKTLYQKEVKRDS 80 (408)
T ss_pred CCcccccccccccccccHHHHHHHHHHHHHHHHhhccccccCCccccccccccchhhhhhhhccccccccccccccccch
Confidence 899999999999999999999999999999999999999999998887654432 37898876 6666799
Q ss_pred chhhhhHHHHHHHHHHHHHhHHHHhhhHHHhhhccccccCCCCCCCCccCCCCCCCCceeEEEEEeCCCCChHHHHHHHH
Q 015962 70 NNNTEKLAMVEQAIQSQDKRLDGLKTKITAVRAERDSVSLSHPVKGTSNISGSMLKRKYFMVIGINTAFSSRKRRDSVRA 149 (397)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llI~V~S~~~~~~rR~aIR~ 149 (397)
++||+||++||+|||+|+|+|+.||||||+|++.+..+.++.|.+++....+...+++++|||+|+|+|+|++||++||+
T Consensus 81 ~~~~~~~~~t~~~~~~~~~~~~~le~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LvIgI~Sap~~~~RR~AIR~ 160 (408)
T PLN03193 81 KDIIGEVSKTHNAIQTLDKTISNLEMELAAARAAQESILNGSPISEDLKKTQSSGKRRYLMVVGINTAFSSRKRRDSVRA 160 (408)
T ss_pred hHHHHHHhhHHHHHHHHhhhhhHHhHHHHHHHhhhhhhccCCCccccccccCCCCcceEEEEEEEeCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999977666766665433333345567889999999999999999999999
Q ss_pred HhhhcchhhhhhhccCCEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccCCchhhHHHHHHHHHHhcCCceEE
Q 015962 150 TWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFY 229 (397)
Q Consensus 150 TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fv 229 (397)
|||++++.+.+++.+.+|+++||||++.++++.++++|++|+++|+|||++||+|+|.|||+||+++|+||.++++++||
T Consensus 161 TWg~~~~~~~kle~~~gv~vrFVIG~s~~~~~~ldr~Le~Ea~~ygDIL~lDfvDsY~NLT~KTl~~f~wA~~~~dAkF~ 240 (408)
T PLN03193 161 TWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLDHVEGYLELSAKTKTYFATAVAMWDADFY 240 (408)
T ss_pred HHcCCcccccccccCCcEEEEEEeecCCCcchHHHHHHHHHHHHhCCEEEEecccccccchHHHHHHHHHHHHcCCCeEE
Confidence 99999877777777899999999999986667899999999999999999999999999999999999999999999999
Q ss_pred EEeccceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccccccccCCCCCCCCCCCCCCceeeCHHHHHHHH
Q 015962 230 IKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYIS 309 (397)
Q Consensus 230 lKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~~~pv~rd~~~Kwyvp~~~~fg~p~~~YP~y~~G~gYvlS~dla~~I~ 309 (397)
||+|||+|||+++|+.+|+.+..++++|+|||+++|++.++++|||+|++|+||++++.|||||+|+|||||+|+|++|+
T Consensus 241 mK~DDDvfVnv~~L~~~L~~~~~~~rlYiG~m~~gPvr~~~~~ky~epe~w~~~~~~~~YPpyAsG~gYVlS~DLa~~I~ 320 (408)
T PLN03193 241 VKVDDDVHVNIATLGETLVRHRKKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGENGNKYFRHATGQLYAISKDLASYIS 320 (408)
T ss_pred EEcCCCceEcHHHHHHHHHhcCCCCCEEEEecccCccccCCCCcCcCcccccccCccccCCCCCCcceEEehHHHHHHHH
Confidence 99999999999999999998877778999999989998778889999999999988999999999999999999999999
Q ss_pred HhccccCCCCcchHHHHHHHhcCCCeEecCCCcccCCCCCcccccccCCcccccccccccccchhHHHHHHhhccCcchH
Q 015962 310 INQHLLHKYANEDVSLGSWFIGLDVEHVDDRRLCCGTPPDCEWKAQLGKTCVATFDWRCSGICKSVERIKEVHELCGEGE 389 (397)
Q Consensus 310 ~~~~~l~~~~~EDV~vG~~l~~L~v~~i~~~~f~~~~~~~~~wk~~~~~~C~~sf~~~~~g~c~~~~~~~~vH~~~p~~~ 389 (397)
.++..++.|++|||+||+||.+|+|+|+|+++|||+++|+|+||++++++|+++|||+|||+|++.+||.++|+.|+|+.
T Consensus 321 ~n~~~L~~y~~EDV~vG~Wl~~L~V~~vdd~~fcc~~~~~C~~~~~~~~~c~~~~~~~csg~c~~~~~~~~~h~~c~~~~ 400 (408)
T PLN03193 321 INQHVLHKYANEDVSLGSWFIGLDVEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSADRIKEVHRRCGEGE 400 (408)
T ss_pred hChhhhcccCcchhhhhhHhccCCceeeecccccCCCCccccccccCCCeeEEEecccCcccCCHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcC
Q 015962 390 DTLWRASF 397 (397)
Q Consensus 390 ~~~W~~~~ 397 (397)
.++|+++|
T Consensus 401 ~~~~~~~~ 408 (408)
T PLN03193 401 NALWSATF 408 (408)
T ss_pred ccceeecC
Confidence 99999876
No 2
>KOG2288 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.8e-72 Score=523.42 Aligned_cols=265 Identities=67% Similarity=1.137 Sum_probs=255.2
Q ss_pred CCceeEEEEEeCCCCChHHHHHHHHHhhhcchhhhhhhccCCEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEec-cc
Q 015962 125 KRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLE-HI 203 (397)
Q Consensus 125 ~~~~~llI~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ld-f~ 203 (397)
+++++++|+|.|++++.+||+++|+||+++++.+++++.+++|.++||||+.. .+++++++|++|+++|+|+|.+| ++
T Consensus 8 ~~k~l~vigI~T~f~s~~RR~~vR~TWmp~~~~l~rle~e~gv~~RFvIG~~~-~g~~~~r~ie~E~~~~~DfllLd~h~ 86 (274)
T KOG2288|consen 8 RRKVLLVIGINTAFSSRKRRDSVRQTWMPSGEGLKRLEEEKGVIIRFVIGTAT-LGASLDRALEEENAQHGDFLLLDRHE 86 (274)
T ss_pred ccceEEEEEeecccchhhhHHHHHHhhcCCccchhhhccccceEEEEEeccCC-ccHHHHHHHHHHHHhcCCeEeechhH
Confidence 77899999999999999999999999999999999999999999999999943 47899999999999999999999 99
Q ss_pred ccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccccccccC
Q 015962 204 EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFG 283 (397)
Q Consensus 204 DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~~~pv~rd~~~Kwyvp~~~~fg 283 (397)
|+|.+||.||+.+|.+|..+|+++||+|+|||+|||++.|...|++++.++++|+|||++|||+.++++|||+|+ |+||
T Consensus 87 E~Y~~Ls~Kt~~~f~~A~~~~daeFyvKvDDDv~v~l~~L~~~la~~r~~pr~YiGcmksg~v~~~~~~kw~Epe-Wkfg 165 (274)
T KOG2288|consen 87 EAYEELSAKTKAFFSAAVAHWDAEFYVKVDDDVYVRLARLGTLLARERSHPRLYIGCMKSGPVLTQPGGKWYEPE-WKFG 165 (274)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceEEEEccccceecHHHHHHHHHhhccCCceEEEEecCCccccCCCCcccChh-hhcC
Confidence 999999999999999999999999999999999999999999999999899999999999999999999999999 9999
Q ss_pred CCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCeEecCCCcccCCCCCcccccccCCccccc
Q 015962 284 EIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEHVDDRRLCCGTPPDCEWKAQLGKTCVAT 363 (397)
Q Consensus 284 ~p~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~~i~~~~f~~~~~~~~~wk~~~~~~C~~s 363 (397)
+.++ |+||+.|++|+||++||.+|+.|+..++.|.+|||++|.||.+|+|+|+|++++||+++ +++.+++|.++
T Consensus 166 ~~g~-YfrhA~G~~YvlS~dLa~yi~in~~lL~~y~nEDVSlGaW~~gldV~h~dd~rlC~~~~-----~~~~~~~~~~~ 239 (274)
T KOG2288|consen 166 DNGN-YFRHATGGGYVLSKDLATYISINRQLLHKYANEDVSLGAWMIGLDVEHVDDPRLCCSTP-----KALAGMVCAAS 239 (274)
T ss_pred cccc-cchhccCceEEeeHHHHHHHHHhHHHHHhhccCCcccceeeeeeeeeEecCCcccccch-----hhhccceeeee
Confidence 8777 99999999999999999999999999999999999999999999999999999999863 77899999999
Q ss_pred ccccccccchhHHHHHHhhccCcchHHHhhhhcC
Q 015962 364 FDWRCSGICKSVERIKEVHELCGEGEDTLWRASF 397 (397)
Q Consensus 364 f~~~~~g~c~~~~~~~~vH~~~p~~~~~~W~~~~ 397 (397)
|+|+|+|+|++..||..+|..|.++..+.|.+.|
T Consensus 240 ~~~kcsglC~~~~rm~~~h~~~~~~~~~~~~~~~ 273 (274)
T KOG2288|consen 240 FDWKCSGLCKSEDRMLEVHKYDWEGKPATCCSRF 273 (274)
T ss_pred ecccccccCchHHHHhHHHHhhccCCCcccCccc
Confidence 9999999999999999999999999999997754
No 3
>PLN03133 beta-1,3-galactosyltransferase; Provisional
Probab=100.00 E-value=3.4e-54 Score=454.07 Aligned_cols=236 Identities=22% Similarity=0.335 Sum_probs=207.5
Q ss_pred CCCceeEEEEEeCCCCChHHHHHHHHHhhhcchhhhhhhccCCEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEeccc
Q 015962 124 LKRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI 203 (397)
Q Consensus 124 ~~~~~~llI~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~ 203 (397)
++++++|||+|+|+|+|++||+|||+|||+... ..+..++++|++|.+. ++.++..|++|+++|+||||+||.
T Consensus 381 ~~~~~~LlI~V~Sap~nf~rR~AIR~TWg~~~~-----~~~~~v~~rFvVG~s~--n~~l~~~L~~Ea~~ygDIIq~dF~ 453 (636)
T PLN03133 381 PKKPLDLFIGVFSTANNFKRRMAVRRTWMQYDA-----VRSGAVAVRFFVGLHK--NQMVNEELWNEARTYGDIQLMPFV 453 (636)
T ss_pred CCCceEEEEEEeCCcccHHHHHHHHHhhccccc-----cCCCceEEEEEEecCC--cHHHHHHHHHHHHHcCCeEEEeee
Confidence 356799999999999999999999999999642 2345699999999986 467899999999999999999999
Q ss_pred ccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEec-cCcccccCCCcccccccccc
Q 015962 204 EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMK-SGPVLARKGVKYYEPEYWKF 282 (397)
Q Consensus 204 DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~-~~pv~rd~~~Kwyvp~~~~f 282 (397)
|+|+|||+||++++.|+.+|++++|+||+|||+|||+++|+++|......+++|+|++. ...|+|++.+|||+|.+.|
T Consensus 454 DsY~NLTlKtl~~~~wa~~c~~akFilK~DDDvFVnv~~Ll~~L~~~~~~~~Ly~G~v~~~~~PiRd~~sKWYVs~~ey- 532 (636)
T PLN03133 454 DYYSLITWKTLAICIFGTEVVSAKYVMKTDDDAFVRVDEVLASLKRTNVSHGLLYGLINSDSQPHRNPDSKWYISPEEW- 532 (636)
T ss_pred chhhhhHHHHHHHHHHHHhCCCceEEEEcCCceEEcHHHHHHHHHhcCCCCceEEEEeccCCCcccCCCCCCCCCHHHC-
Confidence 99999999999999999999999999999999999999999999877667789999986 4567799999999998887
Q ss_pred CCCCCCCCCCCCCCceeeCHHHHHHHHHhc--cccCCCCcchHHHHHHHh-----cCCCeEecCCCcccCCCCCcccccc
Q 015962 283 GEIGNKYFRHATGQLYALSKDLATYISINQ--HLLHKYANEDVSLGSWFI-----GLDVEHVDDRRLCCGTPPDCEWKAQ 355 (397)
Q Consensus 283 g~p~~~YP~y~~G~gYvlS~dla~~I~~~~--~~l~~~~~EDV~vG~~l~-----~L~v~~i~~~~f~~~~~~~~~wk~~ 355 (397)
|.+.|||||+|+|||||+++|++|+.++ ..++.|++||||+|+|+. ++.+.+.++.+||+.
T Consensus 533 --p~~~YPpYasG~gYVlS~Dla~~L~~~s~s~~l~~f~lEDVyvGi~l~~l~k~gl~v~~~~~~r~~~~---------- 600 (636)
T PLN03133 533 --PEETYPPWAHGPGYVVSRDIAKEVYKRHKEGRLKMFKLEDVAMGIWIAEMKKEGLEVKYENDGRIYNE---------- 600 (636)
T ss_pred --CCCCCCCCCCcCEEEEcHHHHHHHHHhhhhcccCcCChhhHhHHHHHHHhcccCCCceeeCCCcccCC----------
Confidence 7889999999999999999999999864 589999999999999985 556777777777632
Q ss_pred cCCcccccccccccccchhHHHHHHhhccCcchHHHhhhhc
Q 015962 356 LGKTCVATFDWRCSGICKSVERIKEVHELCGEGEDTLWRAS 396 (397)
Q Consensus 356 ~~~~C~~sf~~~~~g~c~~~~~~~~vH~~~p~~~~~~W~~~ 396 (397)
.|. ..++.+|...|++|..+|+..
T Consensus 601 ---~C~--------------~~~i~~H~~sP~eM~~lW~~l 624 (636)
T PLN03133 601 ---GCK--------------DGYVVAHYQSPREMLCLWQKL 624 (636)
T ss_pred ---cCC--------------CCeEEEecCCHHHHHHHHHHH
Confidence 242 235779999999999999863
No 4
>KOG2287 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=9.6e-53 Score=421.77 Aligned_cols=239 Identities=24% Similarity=0.337 Sum_probs=216.0
Q ss_pred ceeEEEEEeCCCCChHHHHHHHHHhhhcchhhhhhhccCCEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccC
Q 015962 127 KYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 206 (397)
Q Consensus 127 ~~~llI~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY 206 (397)
.++++|+|.|+++|++||++||+|||+... ..+..++++|++|.+.+.+ .+++.|.+|++.||||||+||.|+|
T Consensus 94 ~~~lLl~V~S~~~~farR~aiR~TW~~~~~-----v~~~~v~~~FLvG~~~~~~-~~~~~l~~Ea~~ygDIi~~df~Dty 167 (349)
T KOG2287|consen 94 PPELLLLVKSAPDNFARRNAIRKTWGNENN-----VRGGRVRVLFLVGLPSNED-KLNKLLADEARLYGDIIQVDFEDTY 167 (349)
T ss_pred CceEEEEEecCCCCHHHHHHHHHHhcCccc-----cCCCcEEEEEEecCCCcHH-HHHHHHHHHHHHhCCEEEEecccch
Confidence 589999999999999999999999999863 4567899999999998543 6689999999999999999999999
Q ss_pred CchhhHHHHHHHHHHh-cCCceEEEEeccceeeeHHHHHHHHHhc-CCCCceEEEEec-cCcccccCCCccccccccccC
Q 015962 207 LELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAH-RTKPRVYVGCMK-SGPVLARKGVKYYEPEYWKFG 283 (397)
Q Consensus 207 ~NLt~Ktl~~~~wa~~-c~~a~fvlKvDDDvfVn~~~L~~~L~~~-~~~~~lyiG~~~-~~pv~rd~~~Kwyvp~~~~fg 283 (397)
.|||+||++++.|+.. |++++|++|+|||+|||+++|+.+|..+ .+.+.+|.|.+. ..+++|++.+|||+|+..|
T Consensus 168 ~nltlKtl~~l~w~~~~cp~akfi~K~DDDvfv~~~~L~~~L~~~~~~~~~~~~G~v~~~~~p~R~~~~KwyVp~~~y-- 245 (349)
T KOG2287|consen 168 FNLTLKTLAILLWGVSKCPDAKFILKIDDDVFVNPDNLLEYLDKLNDPSSDLYYGRVIQNAPPIRDKTSKWYVPESEY-- 245 (349)
T ss_pred hchHHHHHHHHHHHHhcCCcceEEEeccCceEEcHHHHHHHHhccCCCCcceEEEeecccCCCCCCCCCCCccCHHHC--
Confidence 9999999999999996 9999999999999999999999999999 788899999986 4688899999999999888
Q ss_pred CCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcC-CCeEecCCCcccCCCCCcccccccCCcccc
Q 015962 284 EIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGL-DVEHVDDRRLCCGTPPDCEWKAQLGKTCVA 362 (397)
Q Consensus 284 ~p~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L-~v~~i~~~~f~~~~~~~~~wk~~~~~~C~~ 362 (397)
|...||+||+|+|||||+++|+.|+.++.+++.+++|||++|+|++.. |+.+++...|.... ...++|
T Consensus 246 -~~~~YP~Y~sG~gYvis~~~a~~l~~~s~~~~~~~iEDV~~g~~l~~~~gi~~~~~~~~~~~~--------~~~~~~-- 314 (349)
T KOG2287|consen 246 -PCSVYPPYASGPGYVISGDAARRLLKASKHLKFFPIEDVFVGGCLAEDLGIKPVNHPGFFEIP--------LSFDPC-- 314 (349)
T ss_pred -CCCCCCCcCCCceeEecHHHHHHHHHHhcCCCccchHHHHHHHHHHHhcCCCcccCccccccc--------ccCCCC--
Confidence 788999999999999999999999999999999999999999999877 99999988754321 122333
Q ss_pred cccccccccchhHHHHHHhhccCcchHHHhhhh
Q 015962 363 TFDWRCSGICKSVERIKEVHELCGEGEDTLWRA 395 (397)
Q Consensus 363 sf~~~~~g~c~~~~~~~~vH~~~p~~~~~~W~~ 395 (397)
. +++++++|...|++|..+|+.
T Consensus 315 ----------~-~~~~~~~H~~~p~e~~~~w~~ 336 (349)
T KOG2287|consen 315 ----------C-YRDLLAVHRLSPNEMIYLWKK 336 (349)
T ss_pred ----------c-ccceEEEecCCHHHHHHHHHH
Confidence 3 789999999999999999975
No 5
>PF01762 Galactosyl_T: Galactosyltransferase; InterPro: IPR002659 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 31 (GH31 from CAZY) comprises enzymes with a number of known activities; N-acetyllactosaminide beta-1,3-N-acetylglucosaminyltransferase (2.4.1.149 from EC); beta-1,3-galactosyltransferase (2.4.1 from EC); fucose-specific beta-1,3-N-acetylglucosaminyltransferase (2.4.1 from EC); globotriosylceramide beta-1,3-GalNAc transferase (2.4.1.79 from EC) [, ].; GO: 0008378 galactosyltransferase activity, 0006486 protein glycosylation, 0016020 membrane
Probab=100.00 E-value=2.3e-48 Score=359.08 Aligned_cols=191 Identities=29% Similarity=0.404 Sum_probs=172.9
Q ss_pred HHHHHHHHHhhhcchhhhhhhccCCEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccCCchhhHHHHHHHHHH
Q 015962 142 KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAV 221 (397)
Q Consensus 142 ~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY~NLt~Ktl~~~~wa~ 221 (397)
+||++||+|||+... ....+++++||+|.+...+..+++.|.+|+++|+||||+||.|+|+|||+||+++|+|+.
T Consensus 1 ~rR~~IR~TW~~~~~-----~~~~~~~~~FvvG~~~~~~~~~~~~l~~E~~~y~Dil~~d~~D~y~nlt~K~~~~~~w~~ 75 (195)
T PF01762_consen 1 ERRQAIRETWGNQRN-----FKGVRVKVVFVVGESPNSDSDLQEALQEEAEKYGDILQGDFVDSYRNLTLKTLAGLKWAS 75 (195)
T ss_pred ChHHHHHHHHhcccc-----cCCCcEEEEEEEecCCCCcHHHHHHhhhhhhhcCceEeeecccccchhhHHHHHHHHHHH
Confidence 589999999999863 235789999999999855678889999999999999999999999999999999999998
Q ss_pred h-cCCceEEEEeccceeeeHHHHHHHHHhc--CC-CCceEEEEeccCcccccCCCccccccccccCCCCCCCCCCCCCCc
Q 015962 222 S-MWDAEFYIKVDDDVHVNLATLGMTLAAH--RT-KPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQL 297 (397)
Q Consensus 222 ~-c~~a~fvlKvDDDvfVn~~~L~~~L~~~--~~-~~~lyiG~~~~~pv~rd~~~Kwyvp~~~~fg~p~~~YP~y~~G~g 297 (397)
+ |++++|++|+|||+|||+++|..+|... .. ...+|.+++..+++.|++.+|||+|+..| |.+.|||||+|+|
T Consensus 76 ~~c~~~~~v~k~DDD~~vn~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~r~~~~kw~v~~~~y---~~~~yP~y~~G~~ 152 (195)
T PF01762_consen 76 KHCPNAKYVLKVDDDVFVNPDRLVSFLKSLKQDPSKNSIYGGCIKNGPPIRDPSSKWYVSEEEY---PDDYYPPYCSGGG 152 (195)
T ss_pred hhCCchhheeecCcEEEEehHHhhhhhhhcccCccccccccccccCCccccccccCceeeeeec---ccccCCCcCCCCe
Confidence 5 8889999999999999999999999988 33 33455555667788899999999999888 7889999999999
Q ss_pred eeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCeEecCC
Q 015962 298 YALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEHVDDR 340 (397)
Q Consensus 298 YvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~~i~~~ 340 (397)
|+||+++|+.|+.++..++.+++|||++|+|+.++||+++|++
T Consensus 153 yvls~~~v~~i~~~~~~~~~~~~eDv~iGi~~~~~~i~~~~~~ 195 (195)
T PF01762_consen 153 YVLSSDVVKRIYKASSHTPFFPLEDVFIGILAEKLGIKPIHDP 195 (195)
T ss_pred EEecHHHHHHHHHHhhcCCCCCchHHHHHHHHHHCCCCccCCC
Confidence 9999999999999999999999999999999999999999874
No 6
>PTZ00210 UDP-GlcNAc-dependent glycosyltransferase; Provisional
Probab=100.00 E-value=4.1e-32 Score=269.66 Aligned_cols=193 Identities=19% Similarity=0.259 Sum_probs=158.4
Q ss_pred CCCCCceeEEEEEeCCCCC--hHHHHHHHHHhhhcchhh-hhhhccCCEEEEEEeecCCCCCCchHHHHHHHHhHcCCEE
Q 015962 122 SMLKRKYFMVIGINTAFSS--RKRRDSVRATWMPQGEKR-KMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFL 198 (397)
Q Consensus 122 ~~~~~~~~llI~V~S~~~~--~~rR~aIR~TW~~~~~~l-~~l~~~~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL 198 (397)
....+..++++||.|..++ +.||++.|+||.+-..-. +.+.-...+.++|++|..++.+-+++.+|.+|+++|+|||
T Consensus 74 ~w~~~~~lv~~Gi~S~d~~~r~~rR~lqr~t~w~y~~va~~~n~ftg~~lv~y~l~~H~~~~~~~~~~L~eEA~~~~DIV 153 (382)
T PTZ00210 74 VWKAQRFLAVLGIPSVDNSERSRRRDLQRQTCWKYSGVATRSNNFSGSLLPLYLLAPHQSNSYLISHSLKEEAARTHDII 153 (382)
T ss_pred HhccCCceEEEeccCCCchHHHHHHHHHHhhhhcchhhhhhccCCchhhhhhhhhccCCccchhhhHHHHHHHHHhCCEE
Confidence 3457789999999999988 899999999999875422 2222234567889999998766689999999999999999
Q ss_pred Eecc------------------cccCCchhhHHHHHHHHHHh-cCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEE
Q 015962 199 RLEH------------------IEGYLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVG 259 (397)
Q Consensus 199 ~ldf------------------~DsY~NLt~Ktl~~~~wa~~-c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG 259 (397)
++|| .|+|.|+|+||+++|+|+.+ |++++|++|+|||+|||+++++++|+.. ++..+|+|
T Consensus 154 ilpf~d~~~tTnKkiG~~g~WG~e~e~~mT~KT~l~~~wA~~~cP~a~YImKgDDDvFVrVp~lL~~Lr~~-prr~LY~G 232 (382)
T PTZ00210 154 TLPTNDVSPSTRKKIGENGNWGIEAEVAMSRKTYLWLRFALHMFPNVSYIVKGDDDIFIRVPKYLADLRVM-PRHGLYMG 232 (382)
T ss_pred EEecccCccccccccccCCcccchhhcchhHHHHHHHHHHHHhCCCCCeEEEcCCCeEeeHHHHHHHHhhC-CCCceEEE
Confidence 9999 77888999999999999996 9999999999999999999999999665 45569999
Q ss_pred EeccC-cccccCCCccccccccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccc--c---------------CCCCcc
Q 015962 260 CMKSG-PVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHL--L---------------HKYANE 321 (397)
Q Consensus 260 ~~~~~-pv~rd~~~Kwyvp~~~~fg~p~~~YP~y~~G~gYvlS~dla~~I~~~~~~--l---------------~~~~~E 321 (397)
.+... .+. .+.+||||+|+||+||+|+|+.|+...+. + -.+.+|
T Consensus 233 ~v~~~~~p~------------------Rd~~PpY~~G~gYvLSrDVA~~Lvs~~pl~rL~~~pys~~~~~~y~~~~~~~E 294 (382)
T PTZ00210 233 RYNYYNRIW------------------RRNQLTYVNGYCITLSRDTAQAIISYKPLERLVNMPFSMWDYFDFLDLGMFYE 294 (382)
T ss_pred eeCCCCccc------------------cCCCCCccccceeeccHHHHHHHHhhChHhHhhcCCCchHHHHHHHHhhcCch
Confidence 97521 111 12379999999999999999999986432 2 235799
Q ss_pred hHHHHHHH-hcCC
Q 015962 322 DVSLGSWF-IGLD 333 (397)
Q Consensus 322 DV~vG~~l-~~L~ 333 (397)
|+.+|.++ .++.
T Consensus 295 DiMvG~vLr~~~k 307 (382)
T PTZ00210 295 DVMVGMILREKVV 307 (382)
T ss_pred HHHHHHHHHHhcC
Confidence 99999999 4554
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=99.94 E-value=5e-27 Score=193.86 Aligned_cols=85 Identities=42% Similarity=0.736 Sum_probs=74.4
Q ss_pred chhHHHHHHHHHHhhHhhhcccCCCCCcCcccccccc---------CccCcchhhhhcccccchhhhhHHHHHHHHHHHH
Q 015962 17 PRKWALFLCACSFCAGMSFTNRMWMMPESKGVARISK---------TEEIENPELKAVKHESNNNTEKLAMVEQAIQSQD 87 (397)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (397)
|+||+++||++|||||+|||||||..||+.+...... ..++|+++. ..+.+++++|+||+|||++||+||
T Consensus 1 S~kw~l~Lc~~SF~~G~lft~R~W~~pe~~~~~~~~~~~~~~~l~l~s~~c~~k~-~~~~~~~di~~eV~kTh~aIq~Ld 79 (95)
T PF13334_consen 1 SRKWVLLLCIASFCAGMLFTNRMWTVPESKEISRRSSQDAEERLQLVSEDCDPKK-LKESDQRDIMGEVSKTHEAIQSLD 79 (95)
T ss_pred CchHHHHHHHHHHHHHHHHhcccccCCccccchhhhccccccccccccccccccc-cccCCccchhHHHHHHHHHHHHHH
Confidence 6899999999999999999999999999877664221 127998765 335689999999999999999999
Q ss_pred HhHHHHhhhHHHhhh
Q 015962 88 KRLDGLKTKITAVRA 102 (397)
Q Consensus 88 ~~~~~le~el~~~~~ 102 (397)
|+||+||||||+||+
T Consensus 80 KtIS~LEMELAaARa 94 (95)
T PF13334_consen 80 KTISSLEMELAAARA 94 (95)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999999997
No 8
>PF02434 Fringe: Fringe-like; InterPro: IPR003378 The Notch receptor is a large, cell surface transmembrane protein involved in a wide variety of developmental processes in higher organisms []. It becomes activated when its extracellular region binds to ligands located on adjacent cells. Much of this extracellular region is composed of EGF-like repeats, many of which can be O-fucosylated. A number of these O-fucosylated repeats can in turn be further modified by the action of a beta-1,3-N-acetylglucosaminyltransferase enzyme known as Fringe []. Fringe potentiates the activation of Notch by Delta ligands, while inhibiting activation by Serrate/Jagged ligands. This regulation of Notch signalling by Fringe is important in many processes []. Four distinct Fringe proteins have so far been studied in detail; Drosophila Fringe (Dfng) and its three mammalian homologues Lunatic Fringe (Lfng), Radical Fringe (Rfng) and Manic Fringe (Mfng). Dfng, Lfng and Rfng have all been shown to play important roles in developmental processes within their host, though the phenotype of mutants can vary between species e.g. Rfng mutants are retarded in wing development in chickens, but have no obvious phenotype in mice [, , ]. Mfng mutants have not, so far, been charcterised. Biochemical studies indicate that the Fringe proteins are fucose-specific transferases requiring manganese for activity and utilising UDP-N-acetylglucosamine as a donor substrate []. The three mammalian proteins show distinct variations in their catalytic efficiencies with different substrates. Dfng is a glucosaminyltransferase that controls the response of the Notch receptor to specific ligands which is localised to the Golgi apparatus [] (not secreted as previously thought). Modification of Notch occurs through glycosylation by Dfng. This entry consists of Fringe proteins and related glycosyltransferase enzymes including: Beta-1,3-glucosyltransferase, which glucosylates O-linked fucosylglycan on thrombospondin type 1 repeat domains []. Core 1 beta1,3-galactosyltransferase 1, generates the core T antigen, which is a precursor for many extended O-glycans in glycoproteins and plays a central role in many processes, such as angiogenesis, thrombopoiesis and kidney homeostasis development []. ; GO: 0016757 transferase activity, transferring glycosyl groups, 0016020 membrane; PDB: 2J0B_A 2J0A_A.
Probab=99.79 E-value=5.5e-19 Score=170.36 Aligned_cols=193 Identities=18% Similarity=0.195 Sum_probs=101.0
Q ss_pred eeEEEEEeCCCCCh-HHHHHHHHHhhhcchhhhhhhccCCEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccC
Q 015962 128 YFMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY 206 (397)
Q Consensus 128 ~~llI~V~S~~~~~-~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY 206 (397)
-.++|+|+|++++. .|-.+|++||++.+.. + .|+.... .+..|..+ ...+++.-+...++
T Consensus 6 ~dI~i~V~T~~k~h~tR~~~I~~TW~~~~~~---------~--~~ifsd~------~d~~l~~~--~~~~l~~~~~~~~~ 66 (252)
T PF02434_consen 6 DDIFIAVKTTKKFHKTRAPAIKQTWAKRCNK---------Q--TFIFSDA------EDPSLPTV--TGVHLVNPNCDAGH 66 (252)
T ss_dssp GGEEEEEE--GGGTTTTHHHHHHTGGGGSGG---------G--EEEEESS--------HHHHHH--HGGGEEE-------
T ss_pred ccEEEEEEeCHHHHHHHHHHHHHHHHhhcCC---------c--eEEecCc------cccccccc--cccccccCCCcchh
Confidence 36889999999866 4669999999999742 1 2432211 12333333 23456666666555
Q ss_pred CchhhHHHHHHHHHHh-cCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEec-cCcccccCCCccccccccccCC
Q 015962 207 LELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMK-SGPVLARKGVKYYEPEYWKFGE 284 (397)
Q Consensus 207 ~NLt~Ktl~~~~wa~~-c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~-~~pv~rd~~~Kwyvp~~~~fg~ 284 (397)
...+++.++.+.+... .++++|++++|||+||++++|+.+|...++.+++|+|+.. ..+...-.......+
T Consensus 67 ~~~~~~~~~~~~y~~~~~~~~~Wf~~~DDDtyv~~~~L~~~L~~~~~~~~~yiG~~~~~~~~~~~~~~~~~~~------- 139 (252)
T PF02434_consen 67 CRKTLSCKMAYEYDHFLNSDKDWFCFADDDTYVNVENLRRLLSKYDPSEPIYIGRPSGDRPIEIIHRFNPNKS------- 139 (252)
T ss_dssp ------HHHHHHHHHHHHHT-SEEEEEETTEEE-HHHHHHHHTTS-TTS--EEE-EE-----------------------
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEEeCCceecHHHHHHHHhhCCCccCEEeeeeccCccceeecccccccc-------
Confidence 5445555555555332 4688999999999999999999999999999999999974 233211000000000
Q ss_pred CCCCCCCCC-CCCceeeCHHHHHHHHHh---ccccCCC----CcchHHHHHHHhc-CCCeEecCCCcccCCC
Q 015962 285 IGNKYFRHA-TGQLYALSKDLATYISIN---QHLLHKY----ANEDVSLGSWFIG-LDVEHVDDRRLCCGTP 347 (397)
Q Consensus 285 p~~~YP~y~-~G~gYvlS~dla~~I~~~---~~~l~~~----~~EDV~vG~~l~~-L~v~~i~~~~f~~~~~ 347 (397)
...-..|+ +|+||+||+.++++|... ....... ..||+.+|.|+.. |||..++.+.|+...+
T Consensus 140 -~~~~~~f~~GGaG~vlSr~~~~k~~~~~~~~~~~~~~~~~~~~dD~~lG~ci~~~lgv~lt~s~~fhs~~~ 210 (252)
T PF02434_consen 140 -KDSGFWFATGGAGYVLSRALLKKMSPWASGCKCPSTDEKIRLPDDMTLGYCIENLLGVPLTHSPLFHSHLE 210 (252)
T ss_dssp -------EE-GGG-EEEEHHHHHHHHHHHTT-TTS--TTTTTS-HHHHHHHHHHHTT---EEE-TT---SSS
T ss_pred -CcCceEeeCCCeeHHHhHHHHHHHhhhcccccccCCcCCCCCcccChhhhhHHhcCCcceeechhhcccCc
Confidence 11222345 679999999999999542 2222222 3899999999988 9999999999976543
No 9
>KOG2246 consensus Galactosyltransferases [Carbohydrate transport and metabolism]
Probab=99.69 E-value=2.6e-16 Score=158.84 Aligned_cols=169 Identities=23% Similarity=0.318 Sum_probs=131.4
Q ss_pred CCceeEEEEEeCCCCChHH-HHHHHHHhhhcchhhhhhhccCCEEEEEEe---ecCCCCCCchHHHHHHHHhHcCCEEEe
Q 015962 125 KRKYFMVIGINTAFSSRKR-RDSVRATWMPQGEKRKMLEEAKGIIIRFVI---GHSATSGGILDKAIDAEEKMHGDFLRL 200 (397)
Q Consensus 125 ~~~~~llI~V~S~~~~~~r-R~aIR~TW~~~~~~l~~l~~~~~i~~~Fvl---G~s~~~~~~l~~~I~~E~~~~~DIL~l 200 (397)
.++..+++.|.|++.+..- -+++-+||++.++. ..|+- .+.. ..+. .|..
T Consensus 88 ~r~~~v~cwv~t~~~~~~~~~~~v~~TW~~rc~~-----------~~f~s~~~s~~~--------------~~f~-~v~~ 141 (364)
T KOG2246|consen 88 SRSGRVLCWVLTSPMRHVTRADAVKETWLKRCDK-----------GIFFSPTLSKDD--------------SRFP-TVYY 141 (364)
T ss_pred CCCceEEEEEEecCcCceeehhhhhcccccccCc-----------ceecCccCCCCC--------------CcCc-eeec
Confidence 5678999999999887764 47999999999852 23443 3222 1122 3478
Q ss_pred cccccCCchhhHHHHHHHHHHh--cCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCcccccc
Q 015962 201 EHIEGYLELSAKTKTYFATAVS--MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPE 278 (397)
Q Consensus 201 df~DsY~NLt~Ktl~~~~wa~~--c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~~~pv~rd~~~Kwyvp~ 278 (397)
+..|+|+++..||..+|+++.. ..+++|++|+|||||+.++||..+|..+++.+++|+|+.. |.|.
T Consensus 142 ~~~~g~~~~~~ktr~~~~yv~~~~~~~~dWf~~aDDDTy~i~eNLr~~L~~yDp~~p~YiG~~~----------~~~~-- 209 (364)
T KOG2246|consen 142 NLPDGYRSLWRKTRIAFKYVYDHILKDYDWFLKADDDTYFIMENLRYVLSKYDPEKPVYLGYRS----------KSYF-- 209 (364)
T ss_pred cCCcchHHHHHHHHHHHHHHHHhccCCCCeEEeccCCeEEeHHHHHHHHhhcCCCCcEEecccc----------cccc--
Confidence 8999999999999999999983 4799999999999999999999999999999999999863 1111
Q ss_pred ccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhc-----cccCCCC--cchHHHHHHHhcCCCeEecCC
Q 015962 279 YWKFGEIGNKYFRHATGQLYALSKDLATYISINQ-----HLLHKYA--NEDVSLGSWFIGLDVEHVDDR 340 (397)
Q Consensus 279 ~~~fg~p~~~YP~y~~G~gYvlS~dla~~I~~~~-----~~l~~~~--~EDV~vG~~l~~L~v~~i~~~ 340 (397)
.+.| ..+|+||++|+++.+.+++.. .....++ .||+-||.||+.+||...|.+
T Consensus 210 -------~~~y--~~g~ag~~ls~aa~~~la~~l~~~~~~C~~~~~~~~eD~~i~~Cl~~~GV~~~d~~ 269 (364)
T KOG2246|consen 210 -------QNGY--SSGGAGYVLSFAALRRLAERLLNNEDKCPQRYPSYGEDRRIGRCLAEVGVPATDER 269 (364)
T ss_pred -------cccc--ccCCCCcceeHHHHHHHHHHHhcchhhcccccCCchhHHHHHHHHHHhCCCccCch
Confidence 1122 147899999999999887732 1233444 899999999999999888774
No 10
>PLN03153 hypothetical protein; Provisional
Probab=99.14 E-value=4e-10 Score=117.02 Aligned_cols=181 Identities=18% Similarity=0.160 Sum_probs=113.7
Q ss_pred ceeEEEEEeCCCCCh-HHHHHHHHHhhhcchhhhhhhccCCEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEeccccc
Q 015962 127 KYFMVIGINTAFSSR-KRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEG 205 (397)
Q Consensus 127 ~~~llI~V~S~~~~~-~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~Ds 205 (397)
--.++++|.++.+.. +|+..|+.+|.+... . ..+|+.....+. ..+.. --- |.+. .|+
T Consensus 121 ~~hIvF~I~~s~~~w~~R~~yik~wW~p~~~--------r--g~v~ld~~~~~~--~~~~~-------~P~-i~is-~d~ 179 (537)
T PLN03153 121 LNHIMFGIAGSSQLWKRRKELVRLWWRPNQM--------R--GHVWLEEQVSPE--EGDDS-------LPP-IMVS-EDT 179 (537)
T ss_pred cccEEEEEEEchhhhhhhhhhhhhhcCcccc--------e--eEEEecccCCCC--CCcCC-------CCC-EEeC-CCc
Confidence 346888888877765 566999999998531 1 134544332210 00000 000 1110 111
Q ss_pred ----CC---chhhHHHH--HHHHHHh--cCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCcc
Q 015962 206 ----YL---ELSAKTKT--YFATAVS--MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKY 274 (397)
Q Consensus 206 ----Y~---NLt~Ktl~--~~~wa~~--c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~~~pv~rd~~~Kw 274 (397)
|. +......+ +...+.. .++++||+++|||+|+++++|+..|..++++++.|+|......
T Consensus 180 s~f~y~~~~Gh~sa~rI~rmv~et~~~~~pd~kWfVf~DDDTyf~~~NLv~~Ls~YDptkp~YIGs~Se~~--------- 250 (537)
T PLN03153 180 SRFRYTNPTGHPSGLRISRIVLESFRLGLPDVRWFVLGDDDTIFNADNLVAVLSKYDPSEMVYVGGPSESH--------- 250 (537)
T ss_pred ccccccCCCCcHHHHHHHHHHHHHHHhhCCCCCEEEEecCCccccHHHHHHHHhhcCCCCCEEeccccccc---------
Confidence 22 22222111 2333332 5899999999999999999999999999999999999763110
Q ss_pred ccccccccCCCCCCCCCC-CCCCceeeCHHHHHHHHHhcc-ccCC---CCcchHHHHHHHhcCCCeEecCCCcccC
Q 015962 275 YEPEYWKFGEIGNKYFRH-ATGQLYALSKDLATYISINQH-LLHK---YANEDVSLGSWFIGLDVEHVDDRRLCCG 345 (397)
Q Consensus 275 yvp~~~~fg~p~~~YP~y-~~G~gYvlS~dla~~I~~~~~-~l~~---~~~EDV~vG~~l~~L~v~~i~~~~f~~~ 345 (397)
+...+|+ | .| -+|+||+||+.+++.|..... .... ..-+|.-||.|+..+||...+.++|+..
T Consensus 251 --~qn~~f~-----~-~fA~GGAG~~LSrPLae~L~~~~d~C~~rY~~~~~gD~rL~~CL~elGV~LT~~~gfhQ~ 318 (537)
T PLN03153 251 --SANSYFS-----H-NMAFGGGGIAISYPLAEALSRILDDCLDRYPKLYGSDDRLHACITELGVPLSREPGFHQW 318 (537)
T ss_pred --ccccccc-----c-ccccCCceEEEcHHHHHHHHHHhhhhhhhcccCCCcHHHHHHHHHHcCCCceecCCcccc
Confidence 0001111 1 12 389999999999999887522 2222 2358888999999999999999988754
No 11
>KOG3708 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.46 E-value=0.00096 Score=69.59 Aligned_cols=195 Identities=16% Similarity=0.151 Sum_probs=119.4
Q ss_pred eEEEEEeCCCCChHHHHHHHHHhhhcchhhhhhhccCCEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccCCc
Q 015962 129 FMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLE 208 (397)
Q Consensus 129 ~llI~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY~N 208 (397)
.|+++|+|. ..---+|-.|=+..- -++.|+.+.+.-. .|.-++..+-.|..
T Consensus 27 rl~~aVmte---~tlA~a~NrT~ahhv-----------prv~~F~~~~~i~---------------~~~a~~~~vs~~d~ 77 (681)
T KOG3708|consen 27 RLMAAVMTE---STLALAINRTLAHHV-----------PRVHLFADSSRID---------------NDLAQLTNVSPYDL 77 (681)
T ss_pred HHHHHHHHH---HHHHHHHHHHHHhhc-----------ceeEEeecccccc---------------ccHhhccccCcccc
Confidence 345566662 244556666666552 1456777765421 12223333333333
Q ss_pred hhhHHH-HHHHHHHh--cCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccccccccCCC
Q 015962 209 LSAKTK-TYFATAVS--MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEI 285 (397)
Q Consensus 209 Lt~Ktl-~~~~wa~~--c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~~~pv~rd~~~Kwyvp~~~~fg~p 285 (397)
-..|+. +.++++.+ .-++||++-+-|++|||...|+.++....-+.++|+|.-- --| .
T Consensus 78 r~~~~~s~vl~~l~~~~~~~YDwFll~~D~tYv~a~~L~~l~~hmsin~dlymGEe~------------------~~g-s 138 (681)
T KOG3708|consen 78 RGQKTHSMVLGLLFNMVHNNYDWFLLAKDSTYVNAFVLLRLIDHMSINEDLYMGEEA------------------EDG-S 138 (681)
T ss_pred CccccHHHHHHHHHHhhccccceEEEecCcceecHHHHHHHHhhcccccccccchhh------------------hCc-c
Confidence 334443 44566654 4689999999999999999999999988878899998210 001 1
Q ss_pred CCCCCCCC-CCCceeeCHHHHHHHHHhccc---cCCCCcchHHHHHHHh---cCCCeEecCC--CcccC--CCC----Cc
Q 015962 286 GNKYFRHA-TGQLYALSKDLATYISINQHL---LHKYANEDVSLGSWFI---GLDVEHVDDR--RLCCG--TPP----DC 350 (397)
Q Consensus 286 ~~~YP~y~-~G~gYvlS~dla~~I~~~~~~---l~~~~~EDV~vG~~l~---~L~v~~i~~~--~f~~~--~~~----~~ 350 (397)
+. | .|.||+||+.++..+-.|-.- .-.-.-.|+.+|.|+. +++.++.|.. +|... +|. ..
T Consensus 139 ~r-----C~l~~G~LLS~s~l~~lrnnle~C~~~~lsad~d~~lgrCi~~At~v~C~~~hQGvrq~s~~~dspgr~~~~~ 213 (681)
T KOG3708|consen 139 GR-----CRLDTGMLLSQSLLHALRNNLEGCRNDILSADPDEWLGRCIQDATGVGCKPLHQGVRQYSEREDSPGRHDSIP 213 (681)
T ss_pred Cc-----cccccceeecHHHHHHHHhhHHHhhcccccCCcHHHHHHHHHHhhcCCccchhhhHHhhhHhhcCCCccccch
Confidence 11 6 589999999999999886432 2223567899999994 4555544432 22221 111 22
Q ss_pred ccccccCCcccccccccccccchhHHHHHHhhcc-CcchHHHhh
Q 015962 351 EWKAQLGKTCVATFDWRCSGICKSVERIKEVHEL-CGEGEDTLW 393 (397)
Q Consensus 351 ~wk~~~~~~C~~sf~~~~~g~c~~~~~~~~vH~~-~p~~~~~~W 393 (397)
+|+. ++ .+++..+||.+ +|++|+++=
T Consensus 214 e~~~---s~--------------aFr~A~tv~pv~~p~d~yrLH 240 (681)
T KOG3708|consen 214 EWEG---SP--------------AFRSALTVHPVLSPADMYRLH 240 (681)
T ss_pred hhcC---Ch--------------HHhhhhccCccCCHHHHHHHH
Confidence 3431 11 27788899987 777887763
No 12
>PF01755 Glyco_transf_25: Glycosyltransferase family 25 (LPS biosynthesis protein); InterPro: IPR002654 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 25 GT25 from CAZY comprises enzymes with only one known activity; as a lipopolysaccharide biosynthesis protein. These enzymes catalyse the transfer of various sugars onto the growing lipopolysaccharide chain during its biosynthesis [].; GO: 0009103 lipopolysaccharide biosynthetic process
Probab=95.41 E-value=0.33 Score=44.47 Aligned_cols=93 Identities=17% Similarity=0.106 Sum_probs=51.1
Q ss_pred EEEeCCCCChHHHHHHHHHhhhcchhhhhhhccCCEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecc---cccCCc
Q 015962 132 IGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEH---IEGYLE 208 (397)
Q Consensus 132 I~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf---~DsY~N 208 (397)
|.|.|-+.+.+||+.+.+..... ++.+.|+-|.... .++. .+....+..-..... .=+..+
T Consensus 4 i~vInL~~~~~Rr~~~~~~~~~~-----------~~~~e~~~Avdg~---~l~~--~~~~~~~~~~~~~~~~~~~lt~gE 67 (200)
T PF01755_consen 4 IYVINLDRSTERRERIQQQLAKL-----------GINFEFFDAVDGR---DLSE--DELFRRYDPELFKKRYGRPLTPGE 67 (200)
T ss_pred EEEEECCCCHHHHHHHHHHHHHc-----------CCceEEEEeeccc---ccch--HHHHHHhhhhhhhccccccCCcce
Confidence 45667888899999997766644 3456677665442 1111 111111211111100 001111
Q ss_pred h--hhHHHHHHHHHHhcCCceEEEEeccceeeeHH
Q 015962 209 L--SAKTKTYFATAVSMWDAEFYIKVDDDVHVNLA 241 (397)
Q Consensus 209 L--t~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~ 241 (397)
+ .+-.+..++-+++ .+.++.+-..||+.++.+
T Consensus 68 iGC~lSH~~~w~~~v~-~~~~~~lIlEDDv~~~~~ 101 (200)
T PF01755_consen 68 IGCALSHIKAWQRIVD-SGLEYALILEDDVIFDPD 101 (200)
T ss_pred EeehhhHHHHHHHHHH-cCCCeEEEEecccccccc
Confidence 1 3445666666665 367899999999999965
No 13
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=94.41 E-value=1.3 Score=44.92 Aligned_cols=161 Identities=16% Similarity=0.135 Sum_probs=84.5
Q ss_pred CEEEEEEeecCCCCCCchHHHHHHHHhHcCC--EEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHH
Q 015962 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGD--FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 243 (397)
Q Consensus 166 ~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~D--IL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L 243 (397)
.+.++++...++ +.....+++=.+.|.+ +..+. ...-.....|.-...+ +.+..+.++++.+|+|+.+..+.|
T Consensus 70 ~~EIivvdd~s~---D~t~~iv~~~~~~~p~~~i~~v~-~~~~~G~~~K~~~l~~-~~~~a~ge~i~~~DaD~~~~p~~L 144 (373)
T TIGR03472 70 GFQMLFGVQDPD---DPALAVVRRLRADFPDADIDLVI-DARRHGPNRKVSNLIN-MLPHARHDILVIADSDISVGPDYL 144 (373)
T ss_pred CeEEEEEeCCCC---CcHHHHHHHHHHhCCCCceEEEE-CCCCCCCChHHHHHHH-HHHhccCCEEEEECCCCCcChhHH
Confidence 467777666554 2222333333355665 32221 1111222346655444 344458999999999999999999
Q ss_pred HHHHHhcCCCCce-EEEEe-ccCcc--cccC-----CCccccccccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccc
Q 015962 244 GMTLAAHRTKPRV-YVGCM-KSGPV--LARK-----GVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHL 314 (397)
Q Consensus 244 ~~~L~~~~~~~~l-yiG~~-~~~pv--~rd~-----~~Kwyvp~~~~fg~p~~~YP~y~~G~gYvlS~dla~~I~~~~~~ 314 (397)
...+..... +++ .+++. ...+. .... ..-++.|.... ... ..-+.+|.|+.+++.+++...+---...
T Consensus 145 ~~lv~~~~~-~~v~~V~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~-~~~~~~~~G~~~a~RR~~l~~iGGf~~~ 221 (373)
T TIGR03472 145 RQVVAPLAD-PDVGLVTCLYRGRPVPGFWSRLGAMGINHNFLPSVMV-ARA-LGRARFCFGATMALRRATLEAIGGLAAL 221 (373)
T ss_pred HHHHHHhcC-CCcceEeccccCCCCCCHHHHHHHHHhhhhhhHHHHH-HHh-ccCCccccChhhheeHHHHHHcCChHHh
Confidence 888877642 222 22222 11110 0000 00112221000 000 0123458899999999999887532221
Q ss_pred cCCCCcchHHHHHHHhcCCCe
Q 015962 315 LHKYANEDVSLGSWFIGLDVE 335 (397)
Q Consensus 315 l~~~~~EDV~vG~~l~~L~v~ 335 (397)
...-.||+.+|.-+...|.+
T Consensus 222 -~~~~~ED~~l~~~i~~~G~~ 241 (373)
T TIGR03472 222 -AHHLADDYWLGELVRALGLR 241 (373)
T ss_pred -cccchHHHHHHHHHHHcCCe
Confidence 12235999999998665543
No 14
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=94.09 E-value=0.98 Score=41.39 Aligned_cols=114 Identities=12% Similarity=-0.010 Sum_probs=56.8
Q ss_pred HHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhc-CCCCceEEEEec--cCc-ccc--c--CCCccccccccccCCCCC
Q 015962 216 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAH-RTKPRVYVGCMK--SGP-VLA--R--KGVKYYEPEYWKFGEIGN 287 (397)
Q Consensus 216 ~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~-~~~~~lyiG~~~--~~p-v~r--d--~~~Kwyvp~~~~fg~p~~ 287 (397)
.+.++.+..+.+|++.+|||+.+..+.|..++... .+.-.+..|.+. .+. ... . .-..|+... ..++....
T Consensus 77 a~n~~~~~~~~d~i~~lD~D~~~~p~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 155 (228)
T PF13641_consen 77 ALNEALAAARGDYILFLDDDTVLDPDWLERLLAAFADPGVGAVGGPVFPDNDRNWLTRLQDLFFARWHLRF-RSGRRALG 155 (228)
T ss_dssp HHHHHHHH---SEEEEE-SSEEE-CHHHHHHHHHHHBSS--EEEEEEEETTCCCEEEE-TT--S-EETTTS--TT-B---
T ss_pred HHHHHHHhcCCCEEEEECCCcEECHHHHHHHHHHHHhCCCCeEeeeEeecCCCCHHHHHHHHHHhhhhhhh-hhhhcccc
Confidence 34555554569999999999999999988888776 333333434432 111 100 0 000111110 01111111
Q ss_pred CCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCe
Q 015962 288 KYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 335 (397)
Q Consensus 288 ~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 335 (397)
. .++.|++.++.++++..+-.-.. ....||..++.-+...|..
T Consensus 156 -~-~~~~G~~~~~rr~~~~~~g~fd~---~~~~eD~~l~~r~~~~G~~ 198 (228)
T PF13641_consen 156 -V-AFLSGSGMLFRRSALEEVGGFDP---FILGEDFDLCLRLRAAGWR 198 (228)
T ss_dssp ---S-B--TEEEEEHHHHHHH-S--S---SSSSHHHHHHHHHHHTT--
T ss_pred -e-eeccCcEEEEEHHHHHHhCCCCC---CCcccHHHHHHHHHHCCCc
Confidence 1 34679999999999998853222 3446999999988766543
No 15
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=93.76 E-value=2.4 Score=43.20 Aligned_cols=160 Identities=15% Similarity=0.080 Sum_probs=81.7
Q ss_pred CEEEEEEeecCCCCCCchHHHHHHHHhHcC---CEEEecccccCCchhhHH---HHHHHHHHh-cCCceEEEEeccceee
Q 015962 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHG---DFLRLEHIEGYLELSAKT---KTYFATAVS-MWDAEFYIKVDDDVHV 238 (397)
Q Consensus 166 ~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~---DIL~ldf~DsY~NLt~Kt---l~~~~wa~~-c~~a~fvlKvDDDvfV 238 (397)
...+++|-..|.+ + ..+.+++-.+.+. .+..+...+.-.+-.-|. -.+++.+.. +.+.+|++.+|+|+.+
T Consensus 70 ~~eIIVVDd~StD--~-T~~i~~~~~~~~~~~~~i~vi~~~~~~~g~~Gk~~A~n~g~~~A~~~~~~gd~llflDaD~~~ 146 (384)
T TIGR03469 70 KLHVILVDDHSTD--G-TADIARAAARAYGRGDRLTVVSGQPLPPGWSGKLWAVSQGIAAARTLAPPADYLLLTDADIAH 146 (384)
T ss_pred ceEEEEEeCCCCC--c-HHHHHHHHHHhcCCCCcEEEecCCCCCCCCcchHHHHHHHHHHHhccCCCCCEEEEECCCCCC
Confidence 3667777666652 2 2222322223343 344443322222223453 234455442 3458999999999999
Q ss_pred eHHHHHHHHHhcCCCC-ceEEEEeccCcccccCCCccccc-----------cccccCCCCCCCCCCCCCCceeeCHHHHH
Q 015962 239 NLATLGMTLAAHRTKP-RVYVGCMKSGPVLARKGVKYYEP-----------EYWKFGEIGNKYFRHATGQLYALSKDLAT 306 (397)
Q Consensus 239 n~~~L~~~L~~~~~~~-~lyiG~~~~~pv~rd~~~Kwyvp-----------~~~~fg~p~~~YP~y~~G~gYvlS~dla~ 306 (397)
..+.|.+.++.....+ .+..|...... .....+...| -.+. .+ .......+.|++.++++++..
T Consensus 147 ~p~~l~~lv~~~~~~~~~~vs~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~G~~~lirr~~~~ 222 (384)
T TIGR03469 147 GPDNLARLVARARAEGLDLVSLMVRLRC--ESFWEKLLIPAFVFFFQKLYPFRWV-ND-PRRRTAAAAGGCILIRREALE 222 (384)
T ss_pred ChhHHHHHHHHHHhCCCCEEEecccccC--CCHHHHHHHHHHHHHHHHhcchhhh-cC-CCccceeecceEEEEEHHHHH
Confidence 9998888887654322 33322221100 0000000001 0110 00 111233467999999999998
Q ss_pred HHHHhccccCCCCcchHHHHHHHhcCC
Q 015962 307 YISINQHLLHKYANEDVSLGSWFIGLD 333 (397)
Q Consensus 307 ~I~~~~~~l~~~~~EDV~vG~~l~~L~ 333 (397)
.+---.... ....||+.++.-+...|
T Consensus 223 ~vGGf~~~~-~~~~ED~~L~~r~~~~G 248 (384)
T TIGR03469 223 RIGGIAAIR-GALIDDCTLAAAVKRSG 248 (384)
T ss_pred HcCCHHHHh-hCcccHHHHHHHHHHcC
Confidence 873322211 12379999999886554
No 16
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=93.54 E-value=2.2 Score=38.64 Aligned_cols=165 Identities=15% Similarity=-0.004 Sum_probs=83.5
Q ss_pred EEEEEEeecCCCCCCchHHHHHHHHhHc--CCEEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHH
Q 015962 167 IIIRFVIGHSATSGGILDKAIDAEEKMH--GDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 244 (397)
Q Consensus 167 i~~~FvlG~s~~~~~~l~~~I~~E~~~~--~DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~ 244 (397)
+.++.|-+.+. +.....+. +...+ ..+..++... ..|.. |. ..+.++....+.+|++.+|+|..+..+.|.
T Consensus 29 ~eiivvdd~s~---d~t~~~~~-~~~~~~~~~v~~~~~~~-~~~~g-~~-~a~n~g~~~~~~d~i~~~D~D~~~~~~~l~ 101 (229)
T cd04192 29 FEVILVDDHST---DGTVQILE-FAAAKPNFQLKILNNSR-VSISG-KK-NALTTAIKAAKGDWIVTTDADCVVPSNWLL 101 (229)
T ss_pred eEEEEEcCCCC---cChHHHHH-HHHhCCCcceEEeeccC-cccch-hH-HHHHHHHHHhcCCEEEEECCCcccCHHHHH
Confidence 56666665553 22333444 22223 3455555443 22322 22 234555555578999999999999998888
Q ss_pred HHHHhcCC-CCceEEEEeccCcc---ccc-CCCccccccccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCC
Q 015962 245 MTLAAHRT-KPRVYVGCMKSGPV---LAR-KGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYA 319 (397)
Q Consensus 245 ~~L~~~~~-~~~lyiG~~~~~pv---~rd-~~~Kwyvp~~~~fg~p~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~ 319 (397)
.++..... ...++.|.....+. ... ....+........+.....++..+.|+++++++++...+---.... ...
T Consensus 102 ~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~rr~~~~~~ggf~~~~-~~~ 180 (229)
T cd04192 102 TFVAFIQKEQIGLVAGPVIYFKGKSLLAKFQRLDWLSLLGLIAGSFGLGKPFMCNGANMAYRKEAFFEVGGFEGND-HIA 180 (229)
T ss_pred HHHHHhhcCCCcEEeeeeeecCCccHHHHHHHHHHHHHHHHHhhHHHhcCccccccceEEEEHHHHHHhcCCcccc-ccc
Confidence 88875432 23345554321100 000 0000000000000001234555678999999999998874422222 234
Q ss_pred cchHHHHHHH--hcC-CCeEecC
Q 015962 320 NEDVSLGSWF--IGL-DVEHVDD 339 (397)
Q Consensus 320 ~EDV~vG~~l--~~L-~v~~i~~ 339 (397)
.||..++.-+ .+. .+....+
T Consensus 181 ~eD~~~~~~~~~~g~~~~~~~~~ 203 (229)
T cd04192 181 SGDDELLLAKVASKYPKVAYLKN 203 (229)
T ss_pred cCCHHHHHHHHHhCCCCEEEeeC
Confidence 6777666544 344 3444433
No 17
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=92.30 E-value=8 Score=35.41 Aligned_cols=160 Identities=12% Similarity=-0.037 Sum_probs=80.0
Q ss_pred CCEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHH
Q 015962 165 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 244 (397)
Q Consensus 165 ~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~ 244 (397)
..+.++.+-+.+. +.....++...+.+..+....-. +.. +. .++..+.+..+.+|++.+|+|..+.++.|.
T Consensus 30 ~~~evivvd~~s~---d~~~~~~~~~~~~~~~v~~i~~~----~~~-~~-~a~N~g~~~a~~d~v~~lD~D~~~~~~~l~ 100 (249)
T cd02525 30 DLIEIIVVDGGST---DGTREIVQEYAAKDPRIRLIDNP----KRI-QS-AGLNIGIRNSRGDIIIRVDAHAVYPKDYIL 100 (249)
T ss_pred CccEEEEEeCCCC---ccHHHHHHHHHhcCCeEEEEeCC----CCC-ch-HHHHHHHHHhCCCEEEEECCCccCCHHHHH
Confidence 3456666655544 23344444444443334333221 111 11 345555555588999999999999988888
Q ss_pred HHHHhcCCCC-ceEEEEecc---Ccccc----cCCCccccccccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccC
Q 015962 245 MTLAAHRTKP-RVYVGCMKS---GPVLA----RKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLH 316 (397)
Q Consensus 245 ~~L~~~~~~~-~lyiG~~~~---~pv~r----d~~~Kwyvp~~~~fg~p~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~ 316 (397)
..+......+ .+..|.... .+... .....+......+.. ....+-.++.|++.++++++...+-.-...
T Consensus 101 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-- 177 (249)
T cd02525 101 ELVEALKRTGADNVGGPMETIGESKFQKAIAVAQSSPLGSGGSAYRG-GAVKIGYVDTVHHGAYRREVFEKVGGFDES-- 177 (249)
T ss_pred HHHHHHhcCCCCEEecceecCCCChHHHHHHHHhhchhccCCccccc-cccccccccccccceEEHHHHHHhCCCCcc--
Confidence 8886553322 334444321 11100 000000000000000 000001145778889999998876432222
Q ss_pred CCCcchHHHHHHHhcCCCeE
Q 015962 317 KYANEDVSLGSWFIGLDVEH 336 (397)
Q Consensus 317 ~~~~EDV~vG~~l~~L~v~~ 336 (397)
....||..++.-+...|.+.
T Consensus 178 ~~~~eD~~l~~r~~~~G~~~ 197 (249)
T cd02525 178 LVRNEDAELNYRLRKAGYKI 197 (249)
T ss_pred cCccchhHHHHHHHHcCcEE
Confidence 23479999987776555443
No 18
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=91.16 E-value=13 Score=36.05 Aligned_cols=124 Identities=13% Similarity=0.070 Sum_probs=66.5
Q ss_pred HHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEE-Eec--cC--cccccC------------CCccccccc
Q 015962 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVG-CMK--SG--PVLARK------------GVKYYEPEY 279 (397)
Q Consensus 217 ~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG-~~~--~~--pv~rd~------------~~Kwyvp~~ 279 (397)
...+......+|++..|+|+.+..+-|..++......+...+| .+. .+ ...... ...|.....
T Consensus 75 ~N~g~~~A~gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~~~v~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (299)
T cd02510 75 RIAGARAATGDVLVFLDSHCEVNVGWLEPLLARIAENRKTVVCPIIDVIDADTFEYRGSSGDARGGFDWSLHFKWLPLPE 154 (299)
T ss_pred HHHHHHHccCCEEEEEeCCcccCccHHHHHHHHHHhCCCeEEEeeeccccCCCeeEecCCCceeEEecccceeccccCCH
Confidence 3444444478999999999999988877777665433333332 221 01 000000 001111100
Q ss_pred cc--cCC-CCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHH--hcCCCeEecCC
Q 015962 280 WK--FGE-IGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWF--IGLDVEHVDDR 340 (397)
Q Consensus 280 ~~--fg~-p~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l--~~L~v~~i~~~ 340 (397)
.. ... +.....++++|++.++++++...+---...+..+..||+-+..=+ .|..+..+.+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~vGgfDe~~~~~~~ED~Dl~~R~~~~G~~i~~~p~a 220 (299)
T cd02510 155 EERRRESPTAPIRSPTMAGGLFAIDREWFLELGGYDEGMDIWGGENLELSFKVWQCGGSIEIVPCS 220 (299)
T ss_pred HHhhhcCCCCCccCccccceeeEEEHHHHHHhCCCCCcccccCchhHHHHHHHHHcCCeEEEeecc
Confidence 00 000 012234567899999999999988544444555557998775444 45555444443
No 19
>PF13506 Glyco_transf_21: Glycosyl transferase family 21
Probab=90.81 E-value=0.4 Score=43.75 Aligned_cols=123 Identities=15% Similarity=0.070 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCC-CCceEEEEec-cCcccccCCC---c---ccccccccc
Q 015962 211 AKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRT-KPRVYVGCMK-SGPVLARKGV---K---YYEPEYWKF 282 (397)
Q Consensus 211 ~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~-~~~lyiG~~~-~~pv~rd~~~---K---wyvp~~~~f 282 (397)
.|+-..........+.++++-.|+|+.|+.+.|.+.+..... +-.+ +.++. ..|.. .-.+ . ...+.-+.
T Consensus 17 ~Kv~nL~~~~~~~a~~d~~~~~DsDi~v~p~~L~~lv~~l~~p~vgl-Vt~~~~~~~~~-~~~~~l~~~~~~~~~~~~~- 93 (175)
T PF13506_consen 17 PKVNNLAQGLEAGAKYDYLVISDSDIRVPPDYLRELVAPLADPGVGL-VTGLPRGVPAR-GFWSRLEAAFFNFLPGVLQ- 93 (175)
T ss_pred hHHHHHHHHHHhhCCCCEEEEECCCeeECHHHHHHHHHHHhCCCCcE-EEecccccCCc-CHHHHHHHHHHhHHHHHHH-
Confidence 566655554333368999999999999999999998887643 2222 22221 11110 0000 0 01111111
Q ss_pred CCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCeEecCC
Q 015962 283 GEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVEHVDDR 340 (397)
Q Consensus 283 g~p~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~~i~~~ 340 (397)
.-...+++.|+.+++.++++..+-- ...+..+--||..+|..+...|.+..-.+
T Consensus 94 ---a~~~~~~~~G~~m~~rr~~L~~~GG-~~~l~~~ladD~~l~~~~~~~G~~v~~~~ 147 (175)
T PF13506_consen 94 ---ALGGAPFAWGGSMAFRREALEEIGG-FEALADYLADDYALGRRLRARGYRVVLSP 147 (175)
T ss_pred ---HhcCCCceecceeeeEHHHHHHccc-HHHHhhhhhHHHHHHHHHHHCCCeEEEcc
Confidence 0124577999999999999988732 11222244899999999987776655443
No 20
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=90.79 E-value=4.5 Score=33.99 Aligned_cols=135 Identities=16% Similarity=0.104 Sum_probs=64.4
Q ss_pred CEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHH
Q 015962 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (397)
Q Consensus 166 ~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~ 245 (397)
.+.+.++-..+. +.....+++-.+....+..+...+.. .+.. .+..+.+....+|++.+|||.++..+.|..
T Consensus 27 ~~eiivvdd~s~---d~~~~~~~~~~~~~~~i~~i~~~~n~-g~~~----~~n~~~~~a~~~~i~~ld~D~~~~~~~l~~ 98 (169)
T PF00535_consen 27 DFEIIVVDDGST---DETEEILEEYAESDPNIRYIRNPENL-GFSA----ARNRGIKHAKGEYILFLDDDDIISPDWLEE 98 (169)
T ss_dssp EEEEEEEECS-S---SSHHHHHHHHHCCSTTEEEEEHCCCS-HHHH----HHHHHHHH--SSEEEEEETTEEE-TTHHHH
T ss_pred CEEEEEeccccc---cccccccccccccccccccccccccc-cccc----cccccccccceeEEEEeCCCceEcHHHHHH
Confidence 455655555442 33444444444324445545544433 2322 223333334555999999999999887777
Q ss_pred HHHhcCC-CCceEEEEec--cCc--ccccCCC--ccccccccccCCCCCCCCCCCCCCceeeCHHHHHHH
Q 015962 246 TLAAHRT-KPRVYVGCMK--SGP--VLARKGV--KYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYI 308 (397)
Q Consensus 246 ~L~~~~~-~~~lyiG~~~--~~p--v~rd~~~--Kwyvp~~~~fg~p~~~YP~y~~G~gYvlS~dla~~I 308 (397)
++..... ...+.+|... ... ....... .+..............-..++.|++.++++++.+++
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~ 168 (169)
T PF00535_consen 99 LVEALEKNPPDVVIGSVIYIDDDNRYPDRRLRFSFWNRFERKIFNNIRFWKISFFIGSCALFRRSVFEEI 168 (169)
T ss_dssp HHHHHHHCTTEEEEEEEEEEECTTETEECCCTSEEEECCHCHHHHTTHSTTSSEESSSCEEEEEHHHHHC
T ss_pred HHHHHHhCCCcEEEEEEEEecCCccccccccchhhhhhhhhHHHHhhhcCCcccccccEEEEEHHHHHhh
Confidence 6666543 3445666642 111 1000000 011110000000112233457888999999988764
No 21
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=90.49 E-value=13 Score=33.49 Aligned_cols=134 Identities=19% Similarity=0.127 Sum_probs=77.4
Q ss_pred CEEEEEEeecCCCCCCchHHHHHHHHhHcC--CEEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHH
Q 015962 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHG--DFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 243 (397)
Q Consensus 166 ~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~--DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L 243 (397)
.+.+++|...+. +.....+++-...|. ++......... ....|.. .+..+.+....+|++..|+|+.+..+.|
T Consensus 30 ~~eiivVdd~s~---d~t~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~-~~n~g~~~a~~d~i~~~D~D~~~~~~~l 104 (196)
T cd02520 30 KYEILFCVQDED---DPAIPVVRKLIAKYPNVDARLLIGGEKV-GINPKVN-NLIKGYEEARYDILVISDSDISVPPDYL 104 (196)
T ss_pred CeEEEEEeCCCc---chHHHHHHHHHHHCCCCcEEEEecCCcC-CCCHhHH-HHHHHHHhCCCCEEEEECCCceEChhHH
Confidence 367777776665 222334444445554 33222211111 1223433 2344455557899999999999998888
Q ss_pred HHHHHhcCCCCceEEEEeccCcccccCCCccccccccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchH
Q 015962 244 GMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDV 323 (397)
Q Consensus 244 ~~~L~~~~~~~~lyiG~~~~~pv~rd~~~Kwyvp~~~~fg~p~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV 323 (397)
...+.... .+.+ |.+. +.++.|++.++.+++.+.+---.. ...+..||.
T Consensus 105 ~~l~~~~~-~~~~--~~v~---------------------------~~~~~g~~~~~r~~~~~~~ggf~~-~~~~~~eD~ 153 (196)
T cd02520 105 RRMVAPLM-DPGV--GLVT---------------------------CLCAFGKSMALRREVLDAIGGFEA-FADYLAEDY 153 (196)
T ss_pred HHHHHHhh-CCCC--CeEE---------------------------eecccCceeeeEHHHHHhccChHH-HhHHHHHHH
Confidence 88776542 1111 2211 004678999999999988743221 222236999
Q ss_pred HHHHHHhcCCCe
Q 015962 324 SLGSWFIGLDVE 335 (397)
Q Consensus 324 ~vG~~l~~L~v~ 335 (397)
.++.-+...|.+
T Consensus 154 ~l~~rl~~~G~~ 165 (196)
T cd02520 154 FLGKLIWRLGYR 165 (196)
T ss_pred HHHHHHHHcCCe
Confidence 999888665543
No 22
>PRK11204 N-glycosyltransferase; Provisional
Probab=88.42 E-value=29 Score=35.35 Aligned_cols=148 Identities=12% Similarity=0.136 Sum_probs=79.1
Q ss_pred chHHHHHHHHhHcCCEEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEe
Q 015962 182 ILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCM 261 (397)
Q Consensus 182 ~l~~~I~~E~~~~~DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~ 261 (397)
...+.+++..+.+..+...+.. .|.. |. ..++.+.+..+.+|++..|+|..+..+.|...++.....+++ |.+
T Consensus 96 ~t~~~l~~~~~~~~~v~~i~~~---~n~G-ka-~aln~g~~~a~~d~i~~lDaD~~~~~d~L~~l~~~~~~~~~v--~~v 168 (420)
T PRK11204 96 NTGEILDRLAAQIPRLRVIHLA---ENQG-KA-NALNTGAAAARSEYLVCIDGDALLDPDAAAYMVEHFLHNPRV--GAV 168 (420)
T ss_pred cHHHHHHHHHHhCCcEEEEEcC---CCCC-HH-HHHHHHHHHcCCCEEEEECCCCCCChhHHHHHHHHHHhCCCe--EEE
Confidence 3444555555566656555433 2332 43 334555555688999999999999999988888766333332 333
Q ss_pred ccCcccccCCCccccc----cccc-cC-----CCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhc
Q 015962 262 KSGPVLARKGVKYYEP----EYWK-FG-----EIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIG 331 (397)
Q Consensus 262 ~~~pv~rd~~~Kwyvp----~~~~-fg-----~p~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~ 331 (397)
...+...+.. .+... ++.. ++ ......+...+|.+.++.+++...+---. +....||+-++.-+..
T Consensus 169 ~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~rr~~l~~vgg~~---~~~~~ED~~l~~rl~~ 244 (420)
T PRK11204 169 TGNPRIRNRS-TLLGRIQVGEFSSIIGLIKRAQRVYGRVFTVSGVITAFRKSALHEVGYWS---TDMITEDIDISWKLQL 244 (420)
T ss_pred ECCceeccch-hHHHHHHHHHHHHhhhHHHHHHHHhCCceEecceeeeeeHHHHHHhCCCC---CCcccchHHHHHHHHH
Confidence 2112111111 01000 0000 00 00001122357888999999987763211 1224799999988854
Q ss_pred CC--CeEecCC
Q 015962 332 LD--VEHVDDR 340 (397)
Q Consensus 332 L~--v~~i~~~ 340 (397)
.| +...++.
T Consensus 245 ~G~~i~~~p~~ 255 (420)
T PRK11204 245 RGWDIRYEPRA 255 (420)
T ss_pred cCCeEEecccc
Confidence 44 4455543
No 23
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.83 E-value=19 Score=32.02 Aligned_cols=177 Identities=13% Similarity=0.024 Sum_probs=88.3
Q ss_pred HHHHHHhhhcchhhhhhhccCCEEEEEEeecCCCCCCchHHHHHHHHhHcC-CEEEecccccCCchhhHHHHHHHHHHhc
Q 015962 145 DSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHG-DFLRLEHIEGYLELSAKTKTYFATAVSM 223 (397)
Q Consensus 145 ~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~-DIL~ldf~DsY~NLt~Ktl~~~~wa~~c 223 (397)
+.|.++.-+.... ....+.+++|-.-+. +.....+++-...|. .+.......+. ... ..+..+...
T Consensus 11 ~~l~~~l~sl~~q-----~~~~~eiiVvddgS~---d~t~~~~~~~~~~~~~~~~~~~~~~~~-G~~----~~~n~g~~~ 77 (214)
T cd04196 11 KYLREQLDSILAQ-----TYKNDELIISDDGST---DGTVEIIKEYIDKDPFIIILIRNGKNL-GVA----RNFESLLQA 77 (214)
T ss_pred HHHHHHHHHHHhC-----cCCCeEEEEEeCCCC---CCcHHHHHHHHhcCCceEEEEeCCCCc-cHH----HHHHHHHHh
Confidence 5566666554210 112466766655443 223333443334443 23333333222 222 222233444
Q ss_pred CCceEEEEeccceeeeHHHHHHHHHh-cC-CCCceEEEEec----cCcccccCC--CccccccccccCCCCCCCCCCCCC
Q 015962 224 WDAEFYIKVDDDVHVNLATLGMTLAA-HR-TKPRVYVGCMK----SGPVLARKG--VKYYEPEYWKFGEIGNKYFRHATG 295 (397)
Q Consensus 224 ~~a~fvlKvDDDvfVn~~~L~~~L~~-~~-~~~~lyiG~~~----~~pv~rd~~--~Kwyvp~~~~fg~p~~~YP~y~~G 295 (397)
.+.+|++..|+|..+.++.|..++.. .. +...++.|.+. .+....... ...+.+.... .......+..|
T Consensus 78 ~~g~~v~~ld~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 154 (214)
T cd04196 78 ADGDYVFFCDQDDIWLPDKLERLLKAFLKDDKPLLVYSDLELVDENGNPIGESFFEYQKIKPGTSF---NNLLFQNVVTG 154 (214)
T ss_pred CCCCEEEEECCCcccChhHHHHHHHHHhcCCCceEEecCcEEECCCCCCcccccccccccCCccCH---HHHHHhCccCC
Confidence 57999999999999998888888876 22 33334444332 112111000 0000000000 00112345678
Q ss_pred CceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC-CeEecC
Q 015962 296 QLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD-VEHVDD 339 (397)
Q Consensus 296 ~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~-v~~i~~ 339 (397)
+++++.++++..+....... ...||.++...+...+ +..++.
T Consensus 155 ~~~~~r~~~~~~~~~~~~~~--~~~~D~~~~~~~~~~~~~~~~~~ 197 (214)
T cd04196 155 CTMAFNRELLELALPFPDAD--VIMHDWWLALLASAFGKVVFLDE 197 (214)
T ss_pred ceeeEEHHHHHhhccccccc--cccchHHHHHHHHHcCceEEcch
Confidence 99999999998876543332 3578888877665443 444444
No 24
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=87.75 E-value=19 Score=32.64 Aligned_cols=120 Identities=13% Similarity=0.015 Sum_probs=67.4
Q ss_pred HHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCCce-EE-EEec--c-Ccc---cccC--CCcccccc-ccccCCC
Q 015962 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV-YV-GCMK--S-GPV---LARK--GVKYYEPE-YWKFGEI 285 (397)
Q Consensus 217 ~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l-yi-G~~~--~-~pv---~rd~--~~Kwyvp~-~~~fg~p 285 (397)
+..+.+..+.+|++.+|+|.++..+.|..++......+++ .+ |... . ... .+.. ....+... .+. .
T Consensus 76 ~n~~~~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 152 (234)
T cd06421 76 LNNALAHTTGDFVAILDADHVPTPDFLRRTLGYFLDDPKVALVQTPQFFYNPDPFDWLADGAPNEQELFYGVIQPG---R 152 (234)
T ss_pred HHHHHHhCCCCEEEEEccccCcCccHHHHHHHHHhcCCCeEEEecceEEecCCcchhHHHHHHHHHHHHHHHHHHH---H
Confidence 3444444488999999999999999888888766442332 22 2211 1 110 0000 00001000 000 0
Q ss_pred CCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeEecCCCc
Q 015962 286 GNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDRRL 342 (397)
Q Consensus 286 ~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~~~f 342 (397)
......++.|++.++++++.+.+---. ..+..||..++.-+...| +..+++...
T Consensus 153 ~~~~~~~~~g~~~~~r~~~~~~ig~~~---~~~~~eD~~l~~r~~~~g~~i~~~~~~~~ 208 (234)
T cd06421 153 DRWGAAFCCGSGAVVRREALDEIGGFP---TDSVTEDLATSLRLHAKGWRSVYVPEPLA 208 (234)
T ss_pred hhcCCceecCceeeEeHHHHHHhCCCC---ccceeccHHHHHHHHHcCceEEEecCccc
Confidence 111244678999999999998864321 223479999998886554 555555443
No 25
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=87.07 E-value=17 Score=30.62 Aligned_cols=79 Identities=18% Similarity=0.141 Sum_probs=52.3
Q ss_pred CCceEEEEeccceeeeHHHHHHHHHhcCCCCce-EEEEeccCcccccCCCccccccccccCCCCCCCCCCCCCCceeeCH
Q 015962 224 WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV-YVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSK 302 (397)
Q Consensus 224 ~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l-yiG~~~~~pv~rd~~~Kwyvp~~~~fg~p~~~YP~y~~G~gYvlS~ 302 (397)
.+.+|++..|||..+..+.|..++......+.+ .++.. +.|++.++++
T Consensus 73 ~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~~~~~-------------------------------~~~~~~~~~~ 121 (166)
T cd04186 73 AKGDYVLLLNPDTVVEPGALLELLDAAEQDPDVGIVGPK-------------------------------VSGAFLLVRR 121 (166)
T ss_pred CCCCEEEEECCCcEECccHHHHHHHHHHhCCCceEEEcc-------------------------------CceeeEeeeH
Confidence 389999999999999998888888754322221 11110 5788899999
Q ss_pred HHHHHHHHhccccCCCCcchHHHHHHHhcCCC
Q 015962 303 DLATYISINQHLLHKYANEDVSLGSWFIGLDV 334 (397)
Q Consensus 303 dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v 334 (397)
++++.+-.-...... ..||..+..-+...|.
T Consensus 122 ~~~~~~~~~~~~~~~-~~eD~~~~~~~~~~g~ 152 (166)
T cd04186 122 EVFEEVGGFDEDFFL-YYEDVDLCLRARLAGY 152 (166)
T ss_pred HHHHHcCCCChhhhc-cccHHHHHHHHHHcCC
Confidence 988876432222212 5689988776654443
No 26
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=86.24 E-value=15 Score=30.54 Aligned_cols=95 Identities=11% Similarity=0.138 Sum_probs=50.5
Q ss_pred HHHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCCc--eEEEEecc---C-ccccc-CCCccccccccc-cCCCC
Q 015962 215 TYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPR--VYVGCMKS---G-PVLAR-KGVKYYEPEYWK-FGEIG 286 (397)
Q Consensus 215 ~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~--lyiG~~~~---~-pv~rd-~~~Kwyvp~~~~-fg~p~ 286 (397)
..+.++.+..+.+|++.+|+|..+..+.|..++......+. +..|.... . ..... ...++....... .+...
T Consensus 68 ~~~n~~~~~~~~~~i~~~D~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (180)
T cd06423 68 GALNAGLRHAKGDIVVVLDADTILEPDALKRLVVPFFADPKVGAVQGRVRVRNGSENLLTRLQAIEYLSIFRLGRRAQSA 147 (180)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHhccCCCeeeEeeeEEEecCcCcceeccchheecceeeeeeehhhe
Confidence 34455555458999999999999998888877555433332 33333321 1 11100 001111110000 00001
Q ss_pred CCCCCCCCCCceeeCHHHHHHHH
Q 015962 287 NKYFRHATGQLYALSKDLATYIS 309 (397)
Q Consensus 287 ~~YP~y~~G~gYvlS~dla~~I~ 309 (397)
..++..+.|.+++++++++..+-
T Consensus 148 ~~~~~~~~g~~~~~~~~~~~~~g 170 (180)
T cd06423 148 LGGVLVLSGAFGAFRREALREVG 170 (180)
T ss_pred ecceeecCchHHHHHHHHHHHhC
Confidence 23445678999999999988764
No 27
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=85.78 E-value=9.9 Score=33.43 Aligned_cols=135 Identities=13% Similarity=0.078 Sum_probs=72.6
Q ss_pred CCEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHH
Q 015962 165 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 244 (397)
Q Consensus 165 ~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~ 244 (397)
..+.++.+-+.+. ++ ....+.....++..+..+.....+ - |. .++..+......+|++.+|+|.....+.|.
T Consensus 28 ~~~eiivvdd~s~--d~-t~~~~~~~~~~~~~i~~i~~~~n~---G-~~-~a~n~g~~~a~~d~i~~~D~D~~~~~~~l~ 99 (181)
T cd04187 28 YDYEIIFVDDGST--DR-TLEILRELAARDPRVKVIRLSRNF---G-QQ-AALLAGLDHARGDAVITMDADLQDPPELIP 99 (181)
T ss_pred CCeEEEEEeCCCC--cc-HHHHHHHHHhhCCCEEEEEecCCC---C-cH-HHHHHHHHhcCCCEEEEEeCCCCCCHHHHH
Confidence 3456666665554 22 233344444455556555544322 1 22 333444444456999999999999988888
Q ss_pred HHHHhcCCCCceEEEEecc--CcccccCCCccccccccccCCCCCCCCCCCCCCceeeCHHHHHHHHH
Q 015962 245 MTLAAHRTKPRVYVGCMKS--GPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISI 310 (397)
Q Consensus 245 ~~L~~~~~~~~lyiG~~~~--~pv~rd~~~Kwyvp~~~~fg~p~~~YP~y~~G~gYvlS~dla~~I~~ 310 (397)
..++...+...+.+|.... .+..+.-..+.+......+ ....-+...|+.++++++++..+..
T Consensus 100 ~l~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~i~~ 164 (181)
T cd04187 100 EMLAKWEEGYDVVYGVRKNRKESWLKRLTSKLFYRLINKL---SGVDIPDNGGDFRLMDRKVVDALLL 164 (181)
T ss_pred HHHHHHhCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHH---cCCCCCCCCCCEEEEcHHHHHHHHh
Confidence 8887654555666666431 1111000011110000000 1123345678889999999998765
No 28
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=85.71 E-value=26 Score=31.29 Aligned_cols=92 Identities=13% Similarity=0.019 Sum_probs=56.3
Q ss_pred HHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcC-CCCceEEEEeccCcccccCCCccccccccccCCCCCCCCC
Q 015962 213 TKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR-TKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFR 291 (397)
Q Consensus 213 tl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~-~~~~lyiG~~~~~pv~rd~~~Kwyvp~~~~fg~p~~~YP~ 291 (397)
.-.+++++. ..+.+|++..|||..+..+.|..++.... +.-.++.|... .. .+
T Consensus 68 ~n~~~~~a~-~~~~d~v~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~------~~--------------~~----- 121 (202)
T cd04185 68 FYEGVRRAY-ELGYDWIWLMDDDAIPDPDALEKLLAYADKDNPQFLAPLVL------DP--------------DG----- 121 (202)
T ss_pred HHHHHHHHh-ccCCCEEEEeCCCCCcChHHHHHHHHHHhcCCceEecceeE------cC--------------CC-----
Confidence 344566665 56889999999999999888777776554 22122221110 00 01
Q ss_pred CCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 015962 292 HATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 333 (397)
Q Consensus 292 y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~ 333 (397)
.+++.++.+++...+--..... .+..||+.++.-+...|
T Consensus 122 --~~~~~~~~~~~~~~~g~~~~~~-~~~~eD~~~~~r~~~~G 160 (202)
T cd04185 122 --SFVGVLISRRVVEKIGLPDKEF-FIWGDDTEYTLRASKAG 160 (202)
T ss_pred --ceEEEEEeHHHHHHhCCCChhh-hccchHHHHHHHHHHcC
Confidence 3356789999988774322222 23469999987775444
No 29
>cd06532 Glyco_transf_25 Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of Neisseria gonorrhoeae and Lic2A of Haemophilus influenzae. M. catarrhalis Lgt2 catalyzes the addition of galactose (Gal) to the growing chain of LOS on the cell surface. N. gonorrhoeae LgtB and LgtE link Gal-beta(1,4) to GlcNAc (N-acetylglucosamine) and Glc (glucose), respectively. The genes encoding LgtB and LgtE are two genes of a five gene locus involved in the synthesis of gonococcal LOS. LgtE is believed to perform the first step in LOS biosynthesis.
Probab=85.45 E-value=7.4 Score=33.37 Aligned_cols=116 Identities=13% Similarity=0.060 Sum_probs=64.8
Q ss_pred EEeCCCCChHHHHHHHHHhhhcchhhhhhhccCCEEEEEEeecCCCCCCchHHHHHHHHhHcCCE-EEecccccCCchhh
Q 015962 133 GINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDF-LRLEHIEGYLELSA 211 (397)
Q Consensus 133 ~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DI-L~ldf~DsY~NLt~ 211 (397)
.|.+-+...+||+.+++.-... ++.+.|+-|..... .....+......+... ...+..-+--.-.+
T Consensus 3 ~vInL~~~~~Rr~~~~~~~~~~-----------~~~~~~~~Avd~~~--~~~~~~~~~~~~~~~~~~~~~l~~gEiGC~l 69 (128)
T cd06532 3 FVINLDRSTDRRERMEAQLAAL-----------GLDFEFFDAVDGKD--LSEEELAALYDALFLPRYGRPLTPGEIGCFL 69 (128)
T ss_pred EEEECCCCHHHHHHHHHHHHHc-----------CCCeEEEecccccc--CCHHHHHHHhHHHhhhhcCCCCChhhHHHHH
Confidence 4567788889999999854433 34566776655421 1111122111100000 00001111111123
Q ss_pred HHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccccccccCCCCCCCCC
Q 015962 212 KTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFR 291 (397)
Q Consensus 212 Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~~~pv~rd~~~Kwyvp~~~~fg~p~~~YP~ 291 (397)
-.+..++.+++ .+.++.+-..||+.+..+
T Consensus 70 SH~~~w~~~~~-~~~~~alIlEDDv~~~~~-------------------------------------------------- 98 (128)
T cd06532 70 SHYKLWQKIVE-SNLEYALILEDDAILDPD-------------------------------------------------- 98 (128)
T ss_pred HHHHHHHHHHH-cCCCeEEEEccCcEECCC--------------------------------------------------
Confidence 34444555553 366888889999987766
Q ss_pred CCCCCceeeCHHHHHHHHHhccc
Q 015962 292 HATGQLYALSKDLATYISINQHL 314 (397)
Q Consensus 292 y~~G~gYvlS~dla~~I~~~~~~ 314 (397)
+..||++|+..|+++......
T Consensus 99 --~~~~Y~vs~~~A~~ll~~~~~ 119 (128)
T cd06532 99 --GTAGYLVSRKGAKKLLAALEP 119 (128)
T ss_pred --CceEEEeCHHHHHHHHHhCCC
Confidence 446899999999999986554
No 30
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=84.49 E-value=32 Score=31.78 Aligned_cols=117 Identities=15% Similarity=0.114 Sum_probs=60.6
Q ss_pred HHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCC-CCceEEEEecc-CcccccCCCc--cccccccc-cCCCCCCCCC
Q 015962 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRT-KPRVYVGCMKS-GPVLARKGVK--YYEPEYWK-FGEIGNKYFR 291 (397)
Q Consensus 217 ~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~-~~~lyiG~~~~-~pv~rd~~~K--wyvp~~~~-fg~p~~~YP~ 291 (397)
+..+.+....+|++-+|+|+.+..+.|.+.+..... ...+..|.... .+........ |.....+. +. .....+.
T Consensus 101 ~n~gi~~a~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 179 (251)
T cd06439 101 LNRALALATGEIVVFTDANALLDPDALRLLVRHFADPSVGAVSGELVIVDGGGSGSGEGLYWKYENWLKRAE-SRLGSTV 179 (251)
T ss_pred HHHHHHHcCCCEEEEEccccCcCHHHHHHHHHHhcCCCccEEEeEEEecCCcccchhHHHHHHHHHHHHHHH-HhcCCee
Confidence 444444456799999999999998888888777642 22333343321 1100000001 10000000 00 0011233
Q ss_pred CCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeEecCC
Q 015962 292 HATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDR 340 (397)
Q Consensus 292 y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~~ 340 (397)
.+.|+++++.+++.. ..-.....||..++.-+...| +..++..
T Consensus 180 ~~~g~~~~~rr~~~~------~~~~~~~~eD~~l~~~~~~~G~~~~~~~~~ 224 (251)
T cd06439 180 GANGAIYAIRRELFR------PLPADTINDDFVLPLRIARQGYRVVYEPDA 224 (251)
T ss_pred eecchHHHhHHHHhc------CCCcccchhHHHHHHHHHHcCCeEEecccc
Confidence 467777878877665 111223479999988886655 4444443
No 31
>PF13632 Glyco_trans_2_3: Glycosyl transferase family group 2
Probab=82.02 E-value=4.3 Score=36.32 Aligned_cols=117 Identities=17% Similarity=0.147 Sum_probs=66.9
Q ss_pred EEEEeccceeeeHHHHHHHHHhcCCCCceEE--EEeccCcccccCCCcccccccc------ccCCCCCCCCCCCCCCcee
Q 015962 228 FYIKVDDDVHVNLATLGMTLAAHRTKPRVYV--GCMKSGPVLARKGVKYYEPEYW------KFGEIGNKYFRHATGQLYA 299 (397)
Q Consensus 228 fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyi--G~~~~~pv~rd~~~Kwyvp~~~------~fg~p~~~YP~y~~G~gYv 299 (397)
|++-+|+|+.+..+.|.+.+.... .+++-+ |.....+. ...-.++..-++. .........+.++.|++.+
T Consensus 1 ~v~~~DaDt~~~~d~l~~~~~~~~-~~~~~~vq~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~ 78 (193)
T PF13632_consen 1 YVLFLDADTRLPPDFLERLVAALE-DPKVDAVQGPIIFRNR-GSLLTRLQDFEYAISHGLSRLSQSSLGRPLFLSGSGML 78 (193)
T ss_pred CEEEEcCCCCCChHHHHHHHHHHh-CCCceEEEccEEecCC-CChhheeehhhhhhhhhhhHHHHHhcCCCccccCccee
Confidence 688899999999999888887765 333222 22211000 0000111111110 0000112356678999999
Q ss_pred eCHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeEecCCCcccCCCC
Q 015962 300 LSKDLATYISINQHLLHKYANEDVSLGSWFI--GLDVEHVDDRRLCCGTPP 348 (397)
Q Consensus 300 lS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~i~~~~f~~~~~~ 348 (397)
+++++++.+.--. -.....||..++.=+. |..+..+++....+..|+
T Consensus 79 ~r~~~l~~vg~~~--~~~~~~ED~~l~~~l~~~G~~~~~~~~~~~~~~~p~ 127 (193)
T PF13632_consen 79 FRREALREVGGFD--DPFSIGEDMDLGFRLRRAGYRIVYVPDAIVYTEAPP 127 (193)
T ss_pred eeHHHHHHhCccc--ccccccchHHHHHHHHHCCCEEEEecccceeeeCCC
Confidence 9999999874211 1234469999987775 455667777655554443
No 32
>PF04646 DUF604: Protein of unknown function, DUF604; InterPro: IPR006740 This family includes a conserved region found in several uncharacterised plant proteins.
Probab=81.90 E-value=2.2 Score=41.61 Aligned_cols=51 Identities=18% Similarity=0.159 Sum_probs=39.8
Q ss_pred CCCceeeCHHHHHHHHHhcc-cc---CCCCcchHHHHHHHhcCCCeEecCCCccc
Q 015962 294 TGQLYALSKDLATYISINQH-LL---HKYANEDVSLGSWFIGLDVEHVDDRRLCC 344 (397)
Q Consensus 294 ~G~gYvlS~dla~~I~~~~~-~l---~~~~~EDV~vG~~l~~L~v~~i~~~~f~~ 344 (397)
+|+|++||..||+.|..... .+ +.+.--|--|..|+..++|....+++|+.
T Consensus 12 GGgG~~iS~pLa~~L~~~~d~C~~r~~~~~g~D~~i~~C~~~lgv~LT~e~g~hQ 66 (255)
T PF04646_consen 12 GGGGFAISYPLAKALAKMQDDCIERYPHLYGGDQRIQACIAELGVPLTKEPGFHQ 66 (255)
T ss_pred cCceeEEcHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhCCCceecCCcee
Confidence 89999999999999998521 22 33334688899999989988877777764
No 33
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=78.86 E-value=15 Score=32.12 Aligned_cols=113 Identities=12% Similarity=-0.037 Sum_probs=62.7
Q ss_pred HHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcC--CCCceEEEEec--cCcccccCCCccccccccccCCCCCCCCC
Q 015962 216 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR--TKPRVYVGCMK--SGPVLARKGVKYYEPEYWKFGEIGNKYFR 291 (397)
Q Consensus 216 ~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~--~~~~lyiG~~~--~~pv~rd~~~Kwyvp~~~~fg~p~~~YP~ 291 (397)
.+..+.+..+.+|++-.|+|..+..+.+...+.... +...+..|... .+... ....+. ...... .......
T Consensus 66 a~n~~~~~a~~~~v~~ld~D~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~~~-~~~~~~-~~~~~~---~~~~~~~ 140 (202)
T cd06433 66 AMNKGIALATGDIIGFLNSDDTLLPGALLAVVAAFAEHPEVDVVYGDVLLVDENGR-VIGRRR-PPPFLD---KFLLYGM 140 (202)
T ss_pred HHHHHHHHcCCCEEEEeCCCcccCchHHHHHHHHHHhCCCccEEEeeeEEEcCCCC-cccCCC-Ccchhh---hHHhhcC
Confidence 344455445789999999999999999888874332 33445556542 11110 001110 011000 1112334
Q ss_pred CCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCe
Q 015962 292 HATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 335 (397)
Q Consensus 292 y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 335 (397)
+..|++.++++++...+-.-...+ ...||..+..-+...|..
T Consensus 141 ~~~~~~~~~~~~~~~~~~~f~~~~--~~~~D~~~~~r~~~~g~~ 182 (202)
T cd06433 141 PICHQATFFRRSLFEKYGGFDESY--RIAADYDLLLRLLLAGKI 182 (202)
T ss_pred cccCcceEEEHHHHHHhCCCchhh--CchhhHHHHHHHHHcCCc
Confidence 567788899999998874322222 235788777666555443
No 34
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=76.77 E-value=60 Score=29.64 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=62.0
Q ss_pred HHHHHHhc--CCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccc------cccc-cCCCC
Q 015962 216 YFATAVSM--WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEP------EYWK-FGEIG 286 (397)
Q Consensus 216 ~~~wa~~c--~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~~~pv~rd~~~Kwyvp------~~~~-fg~p~ 286 (397)
++.++.+. .+.+|++..|+|+.+.++.|..++.... .+.+ |.+......++....++.. ..++ .+.+.
T Consensus 73 a~n~g~~~a~~~~d~i~~lD~D~~~~~~~l~~l~~~~~-~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (236)
T cd06435 73 ALNYALERTAPDAEIIAVIDADYQVEPDWLKRLVPIFD-DPRV--GFVQAPQDYRDGEESLFKRMCYAEYKGFFDIGMVS 149 (236)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCcCHHHHHHHHHHhc-CCCe--eEEecCccccCCCccHHHHHHhHHHHHHHHHHhcc
Confidence 45666542 3579999999999999999999887764 2322 2221100011111111110 0000 00000
Q ss_pred -CC-CCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCe
Q 015962 287 -NK-YFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 335 (397)
Q Consensus 287 -~~-YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 335 (397)
.. --.++.|++.++++++...+---.. .+..||+-++.=+...|.+
T Consensus 150 ~~~~~~~~~~g~~~~~rr~~~~~iGgf~~---~~~~eD~dl~~r~~~~G~~ 197 (236)
T cd06435 150 RNERNAIIQHGTMCLIRRSALDDVGGWDE---WCITEDSELGLRMHEAGYI 197 (236)
T ss_pred ccccCceEEecceEEEEHHHHHHhCCCCC---ccccchHHHHHHHHHCCcE
Confidence 00 0124678889999999988743222 2347999998877655433
No 35
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=75.08 E-value=28 Score=30.29 Aligned_cols=132 Identities=10% Similarity=0.012 Sum_probs=69.8
Q ss_pred CEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHH
Q 015962 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (397)
Q Consensus 166 ~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~ 245 (397)
...+..+-..+. +.....+......+..+..+....... | -..+..+.++...+|++..|+|..+..+.|..
T Consensus 28 ~~eiivvd~~s~---d~~~~~~~~~~~~~~~~~~~~~~~n~G----~-~~a~n~g~~~a~gd~i~~lD~D~~~~~~~l~~ 99 (185)
T cd04179 28 DYEIIVVDDGST---DGTAEIARELAARVPRVRVIRLSRNFG----K-GAAVRAGFKAARGDIVVTMDADLQHPPEDIPK 99 (185)
T ss_pred CEEEEEEcCCCC---CChHHHHHHHHHhCCCeEEEEccCCCC----c-cHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHH
Confidence 345555544443 234445555555666654444443331 1 13344444444559999999999999998888
Q ss_pred HHHh-cCCCCceEEEEec--cC----cccccCCCccccccc-cccCCCCCCCCCCCCCCceeeCHHHHHHHH
Q 015962 246 TLAA-HRTKPRVYVGCMK--SG----PVLARKGVKYYEPEY-WKFGEIGNKYFRHATGQLYALSKDLATYIS 309 (397)
Q Consensus 246 ~L~~-~~~~~~lyiG~~~--~~----pv~rd~~~Kwyvp~~-~~fg~p~~~YP~y~~G~gYvlS~dla~~I~ 309 (397)
++.. ......+..|... .+ +..+.- ..+..... ..+ ...-.....|+.++++++++..+-
T Consensus 100 l~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~r~~~~~i~ 167 (185)
T cd04179 100 LLEKLLEGGADVVIGSRFVRGGGAGMPLLRRL-GSRLFNFLIRLL---LGVRISDTQSGFRLFRREVLEALL 167 (185)
T ss_pred HHHHHhccCCcEEEEEeecCCCcccchHHHHH-HHHHHHHHHHHH---cCCCCcCCCCceeeeHHHHHHHHH
Confidence 8886 3444556666632 11 111000 00000000 000 011123356777899999999985
No 36
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=74.94 E-value=66 Score=29.24 Aligned_cols=127 Identities=13% Similarity=-0.059 Sum_probs=64.6
Q ss_pred HHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHH---HhcCCCCce-EEEEe-cc--Cccccc--CCCccccccccccC
Q 015962 213 TKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTL---AAHRTKPRV-YVGCM-KS--GPVLAR--KGVKYYEPEYWKFG 283 (397)
Q Consensus 213 tl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L---~~~~~~~~l-yiG~~-~~--~pv~rd--~~~Kwyvp~~~~fg 283 (397)
.-.+++.+.. .+++|++..|+|+.+.++.|..++ ......+.+ .+|.. .. ...... ....+........+
T Consensus 64 ~N~g~~~a~~-~~~d~v~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (237)
T cd02526 64 LNIGIKAALE-NGADYVLLFDQDSVPPPDMVEKLLAYKILSDKNSNIGAVGPRIIDRRTGENSPGVRKSGYKLRIQKEGE 142 (237)
T ss_pred hhHHHHHHHh-CCCCEEEEECCCCCcCHhHHHHHHHHHHhhccCCCeEEEeeeEEcCCCCeeccceeccCccceeccccc
Confidence 3345555543 278999999999999998888885 323223332 23332 11 110000 00000000000000
Q ss_pred CCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeEecCCCc
Q 015962 284 EIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDRRL 342 (397)
Q Consensus 284 ~p~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~~~f 342 (397)
....-..++.|++.++++++...+---...+ .+..||+.++.-+...| +..+++...
T Consensus 143 -~~~~~~~~~~~~~~~~rr~~~~~~ggfd~~~-~~~~eD~d~~~r~~~~G~~~~~~~~~~v 201 (237)
T cd02526 143 -EGLKEVDFLITSGSLISLEALEKVGGFDEDL-FIDYVDTEWCLRARSKGYKIYVVPDAVL 201 (237)
T ss_pred -CCceEeeeeeccceEEcHHHHHHhCCCCHHH-cCccchHHHHHHHHHcCCcEEEEcCeEE
Confidence 0011123456778899999888864322222 23468999988886554 444444433
No 37
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=74.26 E-value=19 Score=31.36 Aligned_cols=96 Identities=13% Similarity=0.051 Sum_probs=57.6
Q ss_pred HHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccccccccCCCCCCCCCCCCCC
Q 015962 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQ 296 (397)
Q Consensus 217 ~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~~~pv~rd~~~Kwyvp~~~~fg~p~~~YP~y~~G~ 296 (397)
+..+.+....+|++..|+|..+..+.|...++...+ .....|... +... . .-.....|+
T Consensus 71 ~n~g~~~a~g~~i~~lD~D~~~~~~~l~~~~~~~~~-~~~v~g~~~------------~~~~-------~-~~~~~~~~~ 129 (182)
T cd06420 71 RNKAIAAAKGDYLIFIDGDCIPHPDFIADHIELAEP-GVFLSGSRV------------LLNE-------K-LTERGIRGC 129 (182)
T ss_pred HHHHHHHhcCCEEEEEcCCcccCHHHHHHHHHHhCC-CcEEeccee------------eccc-------c-cceeEeccc
Confidence 344445457899999999999998888888776632 222223221 0000 0 000234577
Q ss_pred ceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 015962 297 LYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 333 (397)
Q Consensus 297 gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~ 333 (397)
++++.+.....+---......+..||+.++.-+...|
T Consensus 130 ~~~~~r~~~~~~ggf~~~~~~~~~eD~~l~~r~~~~g 166 (182)
T cd06420 130 NMSFWKKDLLAVNGFDEEFTGWGGEDSELVARLLNSG 166 (182)
T ss_pred eEEEEHHHHHHhCCCCcccccCCcchHHHHHHHHHcC
Confidence 7888888777543333333334579999988776665
No 38
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=72.43 E-value=69 Score=28.30 Aligned_cols=114 Identities=12% Similarity=0.071 Sum_probs=60.2
Q ss_pred HHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCC--CceEEEEecc--CcccccCCCcccccc---c-cccCCCCCC
Q 015962 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTK--PRVYVGCMKS--GPVLARKGVKYYEPE---Y-WKFGEIGNK 288 (397)
Q Consensus 217 ~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~--~~lyiG~~~~--~pv~rd~~~Kwyvp~---~-~~fg~p~~~ 288 (397)
+..+....+.+|++..|+|..+..+.|...+...... -.++.|.+.. .... ....+. .|. . ..+.. ..
T Consensus 72 ~N~g~~~a~gd~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~--~~ 147 (201)
T cd04195 72 LNEGLKHCTYDWVARMDTDDISLPDRFEKQLDFIEKNPEIDIVGGGVLEFDSDGN-DIGKRR-LPTSHDDILKFAR--RR 147 (201)
T ss_pred HHHHHHhcCCCEEEEeCCccccCcHHHHHHHHHHHhCCCeEEEcccEEEECCCCC-eecccc-CCCCHHHHHHHhc--cC
Confidence 4444444578999999999999998888888765322 2344444421 1100 000011 111 0 01100 01
Q ss_pred CCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHh--cCCCeEecC
Q 015962 289 YFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFI--GLDVEHVDD 339 (397)
Q Consensus 289 YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~i~~ 339 (397)
- + ..|++.++.+.+...+-.-. +....||..+...+. +..+.++++
T Consensus 148 ~-~-~~~~~~~~rr~~~~~~g~~~---~~~~~eD~~~~~r~~~~g~~~~~~~~ 195 (201)
T cd04195 148 S-P-FNHPTVMFRKSKVLAVGGYQ---DLPLVEDYALWARMLANGARFANLPE 195 (201)
T ss_pred C-C-CCChHHhhhHHHHHHcCCcC---CCCCchHHHHHHHHHHcCCceecccH
Confidence 1 1 24566777777766542211 124589999988875 444555444
No 39
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=70.87 E-value=1.1e+02 Score=30.47 Aligned_cols=135 Identities=10% Similarity=0.036 Sum_probs=70.0
Q ss_pred CCEEEEEEeecCCCCCCchHHHHHHHHhHcCC-EEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHH
Q 015962 165 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGD-FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 243 (397)
Q Consensus 165 ~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~D-IL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L 243 (397)
..+.+++|-..|.+ ++. +.+++-.+.+++ ++......++. |.- ++..+.+..+.+|++-.|.|.-.+++.+
T Consensus 37 ~~~EIIvVDDgS~D--~T~-~il~~~~~~~~~~v~~i~~~~n~G----~~~-A~~~G~~~A~gd~vv~~DaD~q~~p~~i 108 (325)
T PRK10714 37 KEYEILLIDDGSSD--NSA-EMLVEAAQAPDSHIVAILLNRNYG----QHS-AIMAGFSHVTGDLIITLDADLQNPPEEI 108 (325)
T ss_pred CCEEEEEEeCCCCC--cHH-HHHHHHHhhcCCcEEEEEeCCCCC----HHH-HHHHHHHhCCCCEEEEECCCCCCCHHHH
Confidence 35678888766652 222 233332333444 44443333331 111 2223333347899999999999999999
Q ss_pred HHHHHhcCCCCceEEEEec--cCcccccCCCccccccccccCCCCCCCCCCCCCCceeeCHHHHHHHHH
Q 015962 244 GMTLAAHRTKPRVYVGCMK--SGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISI 310 (397)
Q Consensus 244 ~~~L~~~~~~~~lyiG~~~--~~pv~rd~~~Kwyvp~~~~fg~p~~~YP~y~~G~gYvlS~dla~~I~~ 310 (397)
..+++......++..|... ..+..+.-.++.+---...+ .+..++.+.+| .-++++++++.+..
T Consensus 109 ~~l~~~~~~~~DvV~~~r~~~~~~~~r~~~s~~~~~l~~~~--~g~~~~d~~~g-fr~~~r~~~~~l~~ 174 (325)
T PRK10714 109 PRLVAKADEGYDVVGTVRQNRQDSWFRKTASKMINRLIQRT--TGKAMGDYGCM-LRAYRRHIVDAMLH 174 (325)
T ss_pred HHHHHHHHhhCCEEEEEEcCCCCcHHHHHHHHHHHHHHHHH--cCCCCCCCCcC-eEEEcHHHHHHHHH
Confidence 8888876433345444432 12332222222211100001 12344444333 34899999999864
No 40
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=69.98 E-value=31 Score=33.81 Aligned_cols=137 Identities=13% Similarity=0.027 Sum_probs=75.1
Q ss_pred cCCEEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCCce-EEEEec---cCccc--
Q 015962 194 HGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV-YVGCMK---SGPVL-- 267 (397)
Q Consensus 194 ~~DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l-yiG~~~---~~pv~-- 267 (397)
+.++..+...++.- ...=.-.+++.|....+. |++-.++|+.+..+.|.++++.....+.. .+|... .++..
T Consensus 55 ~~~v~~i~~~~NlG-~agg~n~g~~~a~~~~~~-~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~~~~~~i~~~~~~~~~~ 132 (305)
T COG1216 55 FPNVRLIENGENLG-FAGGFNRGIKYALAKGDD-YVLLLNPDTVVEPDLLEELLKAAEEDPAAGVVGPLIRNYDESLYID 132 (305)
T ss_pred CCcEEEEEcCCCcc-chhhhhHHHHHHhcCCCc-EEEEEcCCeeeChhHHHHHHHHHHhCCCCeEeeeeEecCCCCcchh
Confidence 67776665444321 011111455666543222 99999999999999999999887544333 334321 11111
Q ss_pred -ccC-----CCcc-ccccccccCC--CCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 015962 268 -ARK-----GVKY-YEPEYWKFGE--IGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 333 (397)
Q Consensus 268 -rd~-----~~Kw-yvp~~~~fg~--p~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~ 333 (397)
+.. ...| +.+....... +......+++|++.++++++.+.+---.+ --.+..||+-++.=+..+|
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~li~~~~~~~vG~~de-~~F~y~eD~D~~~R~~~~G 206 (305)
T COG1216 133 RRGGESDGLTGGWRASPLLEIAPDLSSYLEVVASLSGACLLIRREAFEKVGGFDE-RFFIYYEDVDLCLRARKAG 206 (305)
T ss_pred eeccccccccccceecccccccccccchhhhhhhcceeeeEEcHHHHHHhCCCCc-ccceeehHHHHHHHHHHcC
Confidence 100 0111 1111110000 01112224789999999999999876222 2234799999988776665
No 41
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=66.38 E-value=1.5e+02 Score=29.89 Aligned_cols=164 Identities=13% Similarity=0.037 Sum_probs=93.5
Q ss_pred EEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHH
Q 015962 167 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMT 246 (397)
Q Consensus 167 i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~ 246 (397)
..+..|...+. +..-+.+++-..++++.+..... -.+- ..-...+.++....+.++++..|-|+.+..+.|.+.
T Consensus 85 ~evivv~d~~~---d~~~~~~~~~~~~~~~~~~~~~~--~~~~-~gK~~al~~~l~~~~~d~V~~~DaD~~~~~d~l~~~ 158 (439)
T COG1215 85 YEVIVVDDGST---DETYEILEELGAEYGPNFRVIYP--EKKN-GGKAGALNNGLKRAKGDVVVILDADTVPEPDALREL 158 (439)
T ss_pred ceEEEECCCCC---hhHHHHHHHHHhhcCcceEEEec--cccC-ccchHHHHHHHhhcCCCEEEEEcCCCCCChhHHHHH
Confidence 56666665443 34455566666666544444422 0111 222445666666556999999999999999999999
Q ss_pred HHhcCCCCce-EEEEec--cCcccccCCCcccccccc-------ccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccC
Q 015962 247 LAAHRTKPRV-YVGCMK--SGPVLARKGVKYYEPEYW-------KFGEIGNKYFRHATGQLYALSKDLATYISINQHLLH 316 (397)
Q Consensus 247 L~~~~~~~~l-yiG~~~--~~pv~rd~~~Kwyvp~~~-------~fg~p~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~ 316 (397)
+......+.. +.|... .++.......+-..-++. ... .....+..+.|+..++.++++..+-. ...
T Consensus 159 ~~~f~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~g~~~~~~G~~~~~rr~aL~~~g~---~~~ 234 (439)
T COG1215 159 VSPFEDPPVGAVVGTPRIRNRPDPSNLLGRIQAIEYLSAFYFRLRAA-SKGGLISFLSGSSSAFRRSALEEVGG---WLE 234 (439)
T ss_pred HhhhcCCCeeEEeCCceeeecCChhhhcchhcchhhhhhHHHhhhhh-hhcCCeEEEcceeeeEEHHHHHHhCC---CCC
Confidence 9887544333 333321 111000000110000100 001 11235777999999999999988872 222
Q ss_pred CCCcchHHHHHHHhcCC--CeEecCC
Q 015962 317 KYANEDVSLGSWFIGLD--VEHVDDR 340 (397)
Q Consensus 317 ~~~~EDV~vG~~l~~L~--v~~i~~~ 340 (397)
..--||..++..+...| +..+++.
T Consensus 235 ~~i~ED~~lt~~l~~~G~~~~~~~~~ 260 (439)
T COG1215 235 DTITEDADLTLRLHLRGYRVVYVPEA 260 (439)
T ss_pred CceeccHHHHHHHHHCCCeEEEeecc
Confidence 23369999999997544 5555554
No 42
>PF10111 Glyco_tranf_2_2: Glycosyltransferase like family 2; InterPro: IPR019290 This conserved domain is found in a set of prokaryotic proteins including putative glucosyltransferases, which are involved in bacterial capsule biosynthesis [, ].
Probab=60.96 E-value=1.6e+02 Score=28.40 Aligned_cols=165 Identities=12% Similarity=0.041 Sum_probs=89.9
Q ss_pred cCCEEEEEEeecCCCCCCchHHHHHHHHhHcCCE-E-EecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHH
Q 015962 164 AKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDF-L-RLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLA 241 (397)
Q Consensus 164 ~~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DI-L-~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~ 241 (397)
...+.+++|=+.+. +.....|.+-.+.++-+ + ..+....+.+.+. +..-+.+....+|++..|.|+.+..+
T Consensus 32 ~~~~eiIvvd~~s~---~~~~~~l~~~~~~~~~~~~i~~~~~~~~f~~a~----arN~g~~~A~~d~l~flD~D~i~~~~ 104 (281)
T PF10111_consen 32 DPDFEIIVVDDGSS---DEFDEELKKLCEKNGFIRYIRHEDNGEPFSRAK----ARNIGAKYARGDYLIFLDADCIPSPD 104 (281)
T ss_pred CCCEEEEEEECCCc---hhHHHHHHHHHhccCceEEEEcCCCCCCcCHHH----HHHHHHHHcCCCEEEEEcCCeeeCHH
Confidence 35677777666554 23445566666666655 2 2222222234332 23334444589999999999999999
Q ss_pred HHHHHHH---hcCC-CCceEEEE-ec-c--C--cccccCCCcccc--ccccccCCCCCCCC-CCCCCCceeeCHHHHHHH
Q 015962 242 TLGMTLA---AHRT-KPRVYVGC-MK-S--G--PVLARKGVKYYE--PEYWKFGEIGNKYF-RHATGQLYALSKDLATYI 308 (397)
Q Consensus 242 ~L~~~L~---~~~~-~~~lyiG~-~~-~--~--pv~rd~~~Kwyv--p~~~~fg~p~~~YP-~y~~G~gYvlS~dla~~I 308 (397)
.|...+. .... ...++++. .. . + .........|.. -+... ....+.+. ....|++.+++++.-..|
T Consensus 105 ~i~~~~~~~~~l~~~~~~~~~~p~~yl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~i~r~~f~~i 183 (281)
T PF10111_consen 105 FIEKLLNHVKKLDKNPNAFLVYPCLYLSEEGSEKFYSQFKNLWDHEFLESFI-SGKNSLWEFIAFASSCFLINREDFLEI 183 (281)
T ss_pred HHHHHHHHHHHHhcCCCceEEEeeeeccchhhHHHhhcchhcchHHHHHHHh-hccccccccccccceEEEEEHHHHHHh
Confidence 9999998 3332 22333332 21 1 1 111110001110 00000 00011111 223569999999998887
Q ss_pred HHhccccCCCCcchHHHHHHHhcCCCeE
Q 015962 309 SINQHLLHKYANEDVSLGSWFIGLDVEH 336 (397)
Q Consensus 309 ~~~~~~l~~~~~EDV~vG~~l~~L~v~~ 336 (397)
----+....+..||.=++.=|...+...
T Consensus 184 GGfDE~f~G~G~ED~D~~~RL~~~~~~~ 211 (281)
T PF10111_consen 184 GGFDERFRGWGYEDIDFGYRLKKAGYKF 211 (281)
T ss_pred CCCCccccCCCcchHHHHHHHHHcCCcE
Confidence 6655666667899999998887666543
No 43
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=58.00 E-value=2.4e+02 Score=29.31 Aligned_cols=161 Identities=12% Similarity=0.104 Sum_probs=84.1
Q ss_pred CEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHH
Q 015962 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (397)
Q Consensus 166 ~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~ 245 (397)
...+++|...+. +...+.+++..+++..+...... .|.. |. .+++.+....+.+|++-.|.|..+..+.|..
T Consensus 104 ~~eIivVdDgs~---D~t~~~~~~~~~~~~~v~vv~~~---~n~G-ka-~AlN~gl~~a~~d~iv~lDAD~~~~~d~L~~ 175 (444)
T PRK14583 104 NIEVIAINDGSS---DDTAQVLDALLAEDPRLRVIHLA---HNQG-KA-IALRMGAAAARSEYLVCIDGDALLDKNAVPY 175 (444)
T ss_pred CeEEEEEECCCC---ccHHHHHHHHHHhCCCEEEEEeC---CCCC-HH-HHHHHHHHhCCCCEEEEECCCCCcCHHHHHH
Confidence 466655554443 23344455555566555433322 2322 43 3455555556899999999999999999888
Q ss_pred HHHhcCCCCceEEEEeccCcccccCC---Cccccccccc-cCC--C-CCC--CCCCCCCCceeeCHHHHHHHHHhccccC
Q 015962 246 TLAAHRTKPRVYVGCMKSGPVLARKG---VKYYEPEYWK-FGE--I-GNK--YFRHATGQLYALSKDLATYISINQHLLH 316 (397)
Q Consensus 246 ~L~~~~~~~~lyiG~~~~~pv~rd~~---~Kwyvp~~~~-fg~--p-~~~--YP~y~~G~gYvlS~dla~~I~~~~~~l~ 316 (397)
.++.....+++ |.+...|..++.. .+....++.. +|. + ... -+..++|.+.++.+++++.+---. +
T Consensus 176 lv~~~~~~~~~--g~v~g~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~g~~~~~sG~~~~~rr~al~~vGg~~---~ 250 (444)
T PRK14583 176 LVAPLIANPRT--GAVTGNPRIRTRSTLIGRVQVGEFSSIIGLIKRTQRVYGQVFTVSGVVAAFRRRALADVGYWS---P 250 (444)
T ss_pred HHHHHHhCCCe--EEEEccceecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCceEecCceeEEEHHHHHHcCCCC---C
Confidence 87765322332 3332222221111 1111111100 000 0 000 112357888999999987763211 1
Q ss_pred CCCcchHHHHHHHhcCC--CeEecC
Q 015962 317 KYANEDVSLGSWFIGLD--VEHVDD 339 (397)
Q Consensus 317 ~~~~EDV~vG~~l~~L~--v~~i~~ 339 (397)
..-.||.-+|.-+...| +...++
T Consensus 251 ~~i~ED~dl~~rl~~~G~~i~~~p~ 275 (444)
T PRK14583 251 DMITEDIDISWKLQLKHWSVFFEPR 275 (444)
T ss_pred CcccccHHHHHHHHHcCCeEEEeec
Confidence 22369999998886555 444444
No 44
>PHA01631 hypothetical protein
Probab=57.89 E-value=23 Score=32.55 Aligned_cols=92 Identities=14% Similarity=0.215 Sum_probs=53.5
Q ss_pred cCCEEEecccccCCchhhHHHHHHHHHHh---cCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccC
Q 015962 194 HGDFLRLEHIEGYLELSAKTKTYFATAVS---MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARK 270 (397)
Q Consensus 194 ~~DIL~ldf~DsY~NLt~Ktl~~~~wa~~---c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~~~pv~rd~ 270 (397)
+.+||...-...+++ +....++..+.+ .-+-+.++-+|.|++|+.-. .. .+.+.++.=|.. -+
T Consensus 39 ~~~Ii~~~t~~e~Rr--~RIAk~Ll~Iln~~s~i~DDi~~iIDSDV~ipn~~--~~----~~~~~v~t~CiP---A~--- 104 (176)
T PHA01631 39 QEKIIWIMTNTEIRW--LRIAKQLLTIVNFAKNIEDDIIAIIDSDLIIPNLR--EI----IPNERVFTPCYW---LY--- 104 (176)
T ss_pred CCceEEecccchhHH--HHHHHHHHHHHHhhccCCccEEEEeccceEecCcc--cc----ccCCCccceeee---ee---
Confidence 555665553322233 233334444543 35778888999999987542 11 123334433321 11
Q ss_pred CCccccccccccCCCCCCCCCCCCCCceeeCHHHHHHHHHh
Q 015962 271 GVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISIN 311 (397)
Q Consensus 271 ~~Kwyvp~~~~fg~p~~~YP~y~~G~gYvlS~dla~~I~~~ 311 (397)
.+ |.+.+-+||.|.-|++.+..+..|...
T Consensus 105 ---------~k---p~~~v~~FC~sTNf~~pr~~l~~l~~v 133 (176)
T PHA01631 105 ---------YD---WANEIRPFCSGTNYIFRKSLLPYLEYT 133 (176)
T ss_pred ---------ec---CCCcEEEEEccccEEeeHHHhHHHHHH
Confidence 11 334566899999999999999998763
No 45
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=57.62 E-value=1.3e+02 Score=26.36 Aligned_cols=111 Identities=14% Similarity=0.117 Sum_probs=58.9
Q ss_pred HHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcC--CCCceEEEEec--c-CcccccCCCccccccccccCCCCCCCC
Q 015962 216 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR--TKPRVYVGCMK--S-GPVLARKGVKYYEPEYWKFGEIGNKYF 290 (397)
Q Consensus 216 ~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~--~~~~lyiG~~~--~-~pv~rd~~~Kwyvp~~~~fg~p~~~YP 290 (397)
++.++......+|++..|+|..+..+.|...++... +...+..+... . ..... ..++.+. |. ....+.
T Consensus 74 a~n~g~~~a~~d~i~~ld~D~~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~~-~~---~~~~~~ 146 (202)
T cd04184 74 ATNSALELATGEFVALLDHDDELAPHALYEVVKALNEHPDADLIYSDEDKIDEGGKRS---EPFFKPD-WS---PDLLLS 146 (202)
T ss_pred HHHHHHHhhcCCEEEEECCCCcCChHHHHHHHHHHHhCCCCCEEEccHHhccCCCCEe---ccccCCC-CC---HHHhhh
Confidence 344444445789999999999999998888887652 22233333221 0 11000 0111111 11 000111
Q ss_pred CCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCCe
Q 015962 291 RHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDVE 335 (397)
Q Consensus 291 ~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v~ 335 (397)
.-+.|++-+++++++..+---... ....||.-++.-+...|.+
T Consensus 147 ~~~~~~~~~~~r~~~~~iggf~~~--~~~~eD~~l~~rl~~~g~~ 189 (202)
T cd04184 147 QNYIGHLLVYRRSLVRQVGGFREG--FEGAQDYDLVLRVSEHTDR 189 (202)
T ss_pred cCCccceEeEEHHHHHHhCCCCcC--cccchhHHHHHHHHhccce
Confidence 123455567888888776431111 2246999888777655544
No 46
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=55.42 E-value=1.1e+02 Score=27.83 Aligned_cols=153 Identities=12% Similarity=0.111 Sum_probs=76.4
Q ss_pred EEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHH
Q 015962 167 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMT 246 (397)
Q Consensus 167 i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~ 246 (397)
..+++|...+. +.....+ .+...+..+.... .+ | .-|.. .+..+....+.+|++.+|+|+.+..+.|...
T Consensus 29 ~eiivvdd~s~---d~~~~~l-~~~~~~~~~~v~~-~~---~-~g~~~-a~n~g~~~a~~d~v~~lD~D~~~~~~~l~~l 98 (235)
T cd06434 29 LEIIVVTDGDD---EPYLSIL-SQTVKYGGIFVIT-VP---H-PGKRR-ALAEGIRHVTTDIVVLLDSDTVWPPNALPEM 98 (235)
T ss_pred CEEEEEeCCCC---hHHHHHH-HhhccCCcEEEEe-cC---C-CChHH-HHHHHHHHhCCCEEEEECCCceeChhHHHHH
Confidence 45556655443 2233333 2344555555543 21 1 12332 2333444458999999999999999999888
Q ss_pred HHhcCCCCce--EEEEec--cC--cccccCCCccccc------cccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhcc-
Q 015962 247 LAAHRTKPRV--YVGCMK--SG--PVLARKGVKYYEP------EYWKFGEIGNKYFRHATGQLYALSKDLATYISINQH- 313 (397)
Q Consensus 247 L~~~~~~~~l--yiG~~~--~~--pv~rd~~~Kwyvp------~~~~fg~p~~~YP~y~~G~gYvlS~dla~~I~~~~~- 313 (397)
+.... .+.+ ..|... .. .+.......++.- ..... .. -...++|+..++.++++..+.-...
T Consensus 99 ~~~~~-~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~G~~~~~rr~~l~~~~~~~~~ 173 (235)
T cd06434 99 LKPFE-DPKVGGVGTNQRILRPRDSKWSFLAAEYLERRNEEIRAAMSY---DG-GVPCLSGRTAAYRTEILKDFLFLEEF 173 (235)
T ss_pred HHhcc-CCCEeEEcCceEeecCcccHHHHHHHHHHHHHHHHHHHHHhh---CC-CEEEccCcHHHHHHHHHhhhhhHHHh
Confidence 88775 3332 112111 00 0000000000000 00000 00 0123567888888888876533211
Q ss_pred ------ccCCCCcchHHHHHHHhcCCC
Q 015962 314 ------LLHKYANEDVSLGSWFIGLDV 334 (397)
Q Consensus 314 ------~l~~~~~EDV~vG~~l~~L~v 334 (397)
-.+....||..++.-+...|.
T Consensus 174 ~~~~~~~~~~~~~eD~~l~~~~~~~g~ 200 (235)
T cd06434 174 TNETFMGRRLNAGDDRFLTRYVLSHGY 200 (235)
T ss_pred hhhhhcCCCCCcCchHHHHHHHHHCCC
Confidence 113345799999887765543
No 47
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=55.14 E-value=90 Score=27.95 Aligned_cols=105 Identities=12% Similarity=0.034 Sum_probs=57.3
Q ss_pred HHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEec----c-CcccccCCCccccccccccCCCCCCCCCC
Q 015962 218 ATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMK----S-GPVLARKGVKYYEPEYWKFGEIGNKYFRH 292 (397)
Q Consensus 218 ~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~----~-~pv~rd~~~Kwyvp~~~~fg~p~~~YP~y 292 (397)
..+......+|++.+|+|..+..+.|...+....... ..+|... . ....+....++..... ....+
T Consensus 65 n~g~~~a~~~~i~~~D~D~~~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~- 135 (221)
T cd02522 65 NAGAAAARGDWLLFLHADTRLPPDWDAAIIETLRADG-AVAGAFRLRFDDPGPRLRLLELGANLRSR-------LFGLP- 135 (221)
T ss_pred HHHHHhccCCEEEEEcCCCCCChhHHHHHHHHhhcCC-cEEEEEEeeecCCccchhhhhhcccceec-------ccCCC-
Confidence 3344434589999999999999888888766554333 3344421 1 1110000011111110 01111
Q ss_pred CCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCCC
Q 015962 293 ATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLDV 334 (397)
Q Consensus 293 ~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~v 334 (397)
.++.+.++++++...+-.-.... ..||.-++.=+...|-
T Consensus 136 ~~~~~~~~r~~~~~~~G~fd~~~---~~ED~d~~~r~~~~G~ 174 (221)
T cd02522 136 YGDQGLFIRRELFEELGGFPELP---LMEDVELVRRLRRRGR 174 (221)
T ss_pred cCCceEEEEHHHHHHhCCCCccc---cccHHHHHHHHHhCCC
Confidence 24567899999887764322222 6899988776665553
No 48
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=54.14 E-value=50 Score=33.55 Aligned_cols=82 Identities=16% Similarity=0.304 Sum_probs=51.5
Q ss_pred HHHHHHHhcCCceEEEEeccceeeeHH---HHHHHHHhcCCCCceEEEEeccCcccccCCCccc---cccccccCCCCCC
Q 015962 215 TYFATAVSMWDAEFYIKVDDDVHVNLA---TLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYY---EPEYWKFGEIGNK 288 (397)
Q Consensus 215 ~~~~wa~~c~~a~fvlKvDDDvfVn~~---~L~~~L~~~~~~~~lyiG~~~~~pv~rd~~~Kwy---vp~~~~fg~p~~~ 288 (397)
.++.|+.+..++++++-+|||..+.++ -+.+.|..+...++++ |+.+-- +.+.+.. .|+..|+.
T Consensus 87 ~aln~vF~~~~~~~vIILEDDl~~sPdFf~yf~~~l~~y~~D~~v~--~ISa~N---dnG~~~~~~~~~~~lyrs----- 156 (334)
T cd02514 87 WALTQTFNLFGYSFVIILEDDLDIAPDFFSYFQATLPLLEEDPSLW--CISAWN---DNGKEHFVDDTPSLLYRT----- 156 (334)
T ss_pred HHHHHHHHhcCCCEEEEECCCCccCHhHHHHHHHHHHHHhcCCCEE--EEEeec---cCCcccccCCCcceEEEe-----
Confidence 366666654579999999999999998 4455665555555654 332100 1111111 13333321
Q ss_pred CCCCCCCCceeeCHHHHHHH
Q 015962 289 YFRHATGQLYALSKDLATYI 308 (397)
Q Consensus 289 YP~y~~G~gYvlS~dla~~I 308 (397)
.|+.|.|+++.+++-..+
T Consensus 157 --~ff~glGWml~r~~W~e~ 174 (334)
T cd02514 157 --DFFPGLGWMLTRKLWKEL 174 (334)
T ss_pred --cCCCchHHHHHHHHHHHh
Confidence 367899999999999887
No 49
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=53.88 E-value=1.6e+02 Score=26.26 Aligned_cols=85 Identities=9% Similarity=0.022 Sum_probs=47.7
Q ss_pred CCceEEEEeccceeeeHHHHHHHHHh-cCCCCceEEEEec-cCcccccCCCcc--ccc-cccccCCC-CCCCCCCCCCCc
Q 015962 224 WDAEFYIKVDDDVHVNLATLGMTLAA-HRTKPRVYVGCMK-SGPVLARKGVKY--YEP-EYWKFGEI-GNKYFRHATGQL 297 (397)
Q Consensus 224 ~~a~fvlKvDDDvfVn~~~L~~~L~~-~~~~~~lyiG~~~-~~pv~rd~~~Kw--yvp-~~~~fg~p-~~~YP~y~~G~g 297 (397)
...+|++.+|+|..+.++.|..++.. ..+...+..|... ..... .....+ +.+ ....+... ...-.+.++|++
T Consensus 77 a~gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (224)
T cd06442 77 ARGDVIVVMDADLSHPPEYIPELLEAQLEGGADLVIGSRYVEGGGV-EGWGLKRKLISRGANLLARLLLGRKVSDPTSGF 155 (224)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCEEEEeeeecCCcc-CCCcHHHHHHHHHHHHHHHHHcCCCCCCCCCcc
Confidence 34589999999999999988888886 3445556666532 11111 000000 000 00000000 011233577888
Q ss_pred eeeCHHHHHHHH
Q 015962 298 YALSKDLATYIS 309 (397)
Q Consensus 298 YvlS~dla~~I~ 309 (397)
.+++++++..+-
T Consensus 156 ~~~~r~~~~~ig 167 (224)
T cd06442 156 RAYRREVLEKLI 167 (224)
T ss_pred chhhHHHHHHHh
Confidence 899999999987
No 50
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=53.82 E-value=86 Score=29.87 Aligned_cols=114 Identities=7% Similarity=-0.035 Sum_probs=57.1
Q ss_pred HHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCC-c-eEEEEec-c-CcccccC---CCccccccccccCCC-CC
Q 015962 216 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKP-R-VYVGCMK-S-GPVLARK---GVKYYEPEYWKFGEI-GN 287 (397)
Q Consensus 216 ~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~-~-lyiG~~~-~-~pv~rd~---~~Kwyvp~~~~fg~p-~~ 287 (397)
++++|.+ .+++|++..|||+.+..+.|...++.....+ . ..+|... . ......+ ...+..+. .....+ ..
T Consensus 65 Gi~~a~~-~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 142 (281)
T TIGR01556 65 GLDASFR-RGVQGVLLLDQDSRPGNAFLAAQWKLLSAENGQACALGPRFFDRGTSRRLPAIHLDGLLLRQ-ISLDGLTTP 142 (281)
T ss_pred HHHHHHH-CCCCEEEEECCCCCCCHHHHHHHHHHHHhcCCceEEECCeEEcCCCcccCCceeecccceee-ecccccCCc
Confidence 5566654 3789999999999999888877776543221 2 2333221 1 0000000 00010010 000000 00
Q ss_pred CCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcC
Q 015962 288 KYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGL 332 (397)
Q Consensus 288 ~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L 332 (397)
.-..++.++|.++++++++.+---.+.+ .+..||+-+..=+...
T Consensus 143 ~~~~~~~~sg~li~~~~~~~iG~fde~~-fi~~~D~e~~~R~~~~ 186 (281)
T TIGR01556 143 QKTSFLISSGCLITREVYQRLGMMDEEL-FIDHVDTEWSLRAQNY 186 (281)
T ss_pred eeccEEEcCcceeeHHHHHHhCCccHhh-cccchHHHHHHHHHHC
Confidence 1112445566789999998874422222 2346888765555433
No 51
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=50.02 E-value=1.9e+02 Score=25.89 Aligned_cols=89 Identities=11% Similarity=0.016 Sum_probs=51.7
Q ss_pred CCEEEEEEeecCCCCCCchHHHHHHHHhHcCCE-EEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHH
Q 015962 165 KGIIIRFVIGHSATSGGILDKAIDAEEKMHGDF-LRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 243 (397)
Q Consensus 165 ~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DI-L~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L 243 (397)
..+.++.|-+.|. +.....+++..+.++.. ..+.... |.- |. .++..+.+....+|++.+|+|..+.++.|
T Consensus 29 ~~~eiivvdd~S~---D~t~~~~~~~~~~~~~~i~~i~~~~---n~G-~~-~a~~~g~~~a~gd~i~~ld~D~~~~~~~l 100 (211)
T cd04188 29 FSYEIIVVDDGSK---DGTAEVARKLARKNPALIRVLTLPK---NRG-KG-GAVRAGMLAARGDYILFADADLATPFEEL 100 (211)
T ss_pred CCEEEEEEeCCCC---CchHHHHHHHHHhCCCcEEEEEccc---CCC-cH-HHHHHHHHHhcCCEEEEEeCCCCCCHHHH
Confidence 3466766666554 23344455555556654 2222222 211 11 22333333335699999999999999999
Q ss_pred HHHHHh-cCCCCceEEEEe
Q 015962 244 GMTLAA-HRTKPRVYVGCM 261 (397)
Q Consensus 244 ~~~L~~-~~~~~~lyiG~~ 261 (397)
..++.. ......+.+|..
T Consensus 101 ~~l~~~~~~~~~~~v~g~r 119 (211)
T cd04188 101 EKLEEALKTSGYDIAIGSR 119 (211)
T ss_pred HHHHHHHhccCCcEEEEEe
Confidence 888886 334446677764
No 52
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=45.99 E-value=2.3e+02 Score=25.74 Aligned_cols=118 Identities=15% Similarity=0.091 Sum_probs=59.3
Q ss_pred HHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCcccc-----cccccc-----CCCC
Q 015962 217 FATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYE-----PEYWKF-----GEIG 286 (397)
Q Consensus 217 ~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~~~pv~rd~~~Kwyv-----p~~~~f-----g~p~ 286 (397)
+..+....+.+|++.+|.|+.+..+.|...+.... .+. +|.+.......+....|.. +....+ +...
T Consensus 79 ~n~g~~~a~~~~i~~~DaD~~~~~~~l~~~~~~~~-~~~--v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (232)
T cd06437 79 LAEGMKVAKGEYVAIFDADFVPPPDFLQKTPPYFA-DPK--LGFVQTRWGHINANYSLLTRVQAMSLDYHFTIEQVARSS 155 (232)
T ss_pred HHHHHHhCCCCEEEEEcCCCCCChHHHHHhhhhhc-CCC--eEEEecceeeEcCCCchhhHhhhhhHHhhhhHhHhhHhh
Confidence 45555545899999999999999999888554332 232 2332211100111111110 000000 0000
Q ss_pred CCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeEecCC
Q 015962 287 NKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDR 340 (397)
Q Consensus 287 ~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~~ 340 (397)
......+.|++-++.+++...+---.. ....||+.++.-+...| +..+++.
T Consensus 156 ~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~ED~~l~~rl~~~G~~~~~~~~~ 208 (232)
T cd06437 156 TGLFFNFNGTAGVWRKECIEDAGGWNH---DTLTEDLDLSYRAQLKGWKFVYLDDV 208 (232)
T ss_pred cCCeEEeccchhhhhHHHHHHhCCCCC---CcchhhHHHHHHHHHCCCeEEEeccc
Confidence 111112356666788888777632111 22479999998886544 4444443
No 53
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=42.10 E-value=2.9e+02 Score=25.63 Aligned_cols=156 Identities=15% Similarity=0.118 Sum_probs=78.2
Q ss_pred CEEEEEEeecCCCCCCchHHHHHHHHhHcCC--EEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHH
Q 015962 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGD--FLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATL 243 (397)
Q Consensus 166 ~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~D--IL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L 243 (397)
.+.+++|-..|. +...+.+.+-.++|++ +....... |.. | -.++..+....+.+|++..|+|..++++.|
T Consensus 40 ~~eiivvDdgS~---D~t~~i~~~~~~~~~~~~v~~~~~~~---n~G-~-~~a~n~g~~~a~g~~i~~lD~D~~~~~~~l 111 (243)
T PLN02726 40 DFEIIVVDDGSP---DGTQDVVKQLQKVYGEDRILLRPRPG---KLG-L-GTAYIHGLKHASGDFVVIMDADLSHHPKYL 111 (243)
T ss_pred CeEEEEEeCCCC---CCHHHHHHHHHHhcCCCcEEEEecCC---CCC-H-HHHHHHHHHHcCCCEEEEEcCCCCCCHHHH
Confidence 567777766554 2233344443445543 22222221 221 1 123344444446899999999999999988
Q ss_pred HHHHHhcC-CCCceEEEEec--cCcccccCCCcc---cccc------ccccCCCCCCCCCCCCCCceeeCHHHHHHHHHh
Q 015962 244 GMTLAAHR-TKPRVYVGCMK--SGPVLARKGVKY---YEPE------YWKFGEIGNKYFRHATGQLYALSKDLATYISIN 311 (397)
Q Consensus 244 ~~~L~~~~-~~~~lyiG~~~--~~pv~rd~~~Kw---yvp~------~~~fg~p~~~YP~y~~G~gYvlS~dla~~I~~~ 311 (397)
..++.... ....+..|... .+.. .+..| ..+. .+.++ ... +...|+..+++++++..+...
T Consensus 112 ~~l~~~~~~~~~~~v~g~r~~~~~~~---~~~~~~r~~~~~~~~~~~~~~~~---~~~-~d~~g~~~~~rr~~~~~i~~~ 184 (243)
T PLN02726 112 PSFIKKQRETGADIVTGTRYVKGGGV---HGWDLRRKLTSRGANVLAQTLLW---PGV-SDLTGSFRLYKRSALEDLVSS 184 (243)
T ss_pred HHHHHHHHhcCCcEEEEccccCCCCc---CCccHHHHHHHHHHHHHHHHHhC---CCC-CcCCCcccceeHHHHHHHHhh
Confidence 88887653 23456666532 1100 00001 1100 01111 111 235788889999999998653
Q ss_pred ccccCCCCcchHHHHHHHh--cCCCeEec
Q 015962 312 QHLLHKYANEDVSLGSWFI--GLDVEHVD 338 (397)
Q Consensus 312 ~~~l~~~~~EDV~vG~~l~--~L~v~~i~ 338 (397)
...- .| ..|+-+...+. |..+..++
T Consensus 185 ~~~~-~~-~~~~el~~~~~~~g~~i~~vp 211 (243)
T PLN02726 185 VVSK-GY-VFQMEIIVRASRKGYRIEEVP 211 (243)
T ss_pred ccCC-Cc-EEehHHHHHHHHcCCcEEEeC
Confidence 2221 22 23554544443 44444443
No 54
>PF03071 GNT-I: GNT-I family; InterPro: IPR004139 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GNT-I, GLCNAC-T I) 2.4.1.101 from EC transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide. This is an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus, and is probably distributed in all tissues. The catalytic domain is located at the C terminus []. These proteins are members of the glycosyl transferase family 13 (GH13 from CAZY); GO: 0003827 alpha-1,3-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0006487 protein N-linked glycosylation, 0000139 Golgi membrane; PDB: 2APC_A 2AM4_A 1FO9_A 2AM3_A 1FOA_A 2AM5_A 1FO8_A.
Probab=40.97 E-value=2.2e+02 Score=30.19 Aligned_cols=87 Identities=14% Similarity=0.237 Sum_probs=43.6
Q ss_pred HHHHHHHHH----hcCCceEEEEeccceeeeHHHHHHHHHhc---CCCCceEEEEeccCcccccCCCcccc----ccccc
Q 015962 213 TKTYFATAV----SMWDAEFYIKVDDDVHVNLATLGMTLAAH---RTKPRVYVGCMKSGPVLARKGVKYYE----PEYWK 281 (397)
Q Consensus 213 tl~~~~wa~----~c~~a~fvlKvDDDvfVn~~~L~~~L~~~---~~~~~lyiG~~~~~pv~rd~~~Kwyv----p~~~~ 281 (397)
.-.=++|+. ...+++.++-+.||.-|-++-+--+.... ...+.+| |+.+- .|.+...++ |+..|
T Consensus 175 IA~HYk~aL~~vF~~~~~~~vIIlEDDL~isPDFf~Yf~~~~~ll~~D~sl~--ciSaw---NdnG~~~~~~~~~~~~ly 249 (434)
T PF03071_consen 175 IARHYKWALSQVFNKFKYSSVIILEDDLEISPDFFEYFSATLPLLENDPSLW--CISAW---NDNGKEHFVDDSRPSLLY 249 (434)
T ss_dssp HHHHHHHHHHHHHHTS--SEEEEEETTEEE-TTHHHHHHHHHHHHHH-TTEE--EEES-----TT-BGGGS-TT-TT-EE
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEecCcccCccHHHHHHHHHHHHhcCCCeE--EEEcc---ccCCccccccCCCccceE
Confidence 344455654 23578899999999999887554443332 2345666 33210 011111111 33344
Q ss_pred cCCCCCCCCCCCCCCceeeCHHHHHHHHHh
Q 015962 282 FGEIGNKYFRHATGQLYALSKDLATYISIN 311 (397)
Q Consensus 282 fg~p~~~YP~y~~G~gYvlS~dla~~I~~~ 311 (397)
.. .|..|-|++|++++=..|...
T Consensus 250 Rs-------dffpglGWml~r~~w~el~~~ 272 (434)
T PF03071_consen 250 RS-------DFFPGLGWMLTRELWDELEPK 272 (434)
T ss_dssp EE-------SS---SSEEEEHHHHHHHGGG
T ss_pred ec-------ccCCchHHHhhHHHHHhhccc
Confidence 21 145799999999998876543
No 55
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=36.71 E-value=1.4e+02 Score=29.74 Aligned_cols=80 Identities=11% Similarity=0.093 Sum_probs=58.4
Q ss_pred cCCEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEeccc--ccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHH
Q 015962 164 AKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI--EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLA 241 (397)
Q Consensus 164 ~~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~--DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~ 241 (397)
..++.+.|+-|.+ ..++.|..=.....-++-+++. +++..-+.-...+..|+.+..+..+++..|-|+|.-.+
T Consensus 36 ~~~~~vi~~~~~~-----~~d~~i~~~i~~~~~~~yl~~~s~~~F~s~~~c~n~ga~Ysh~~~~Sn~vlFlDvDc~~S~d 110 (346)
T COG4092 36 SDITMVICLRAHE-----VMDRLIRSYIDPMPRVLYLDFGSPEPFASETICANNGADYSHEKCESNLVLFLDVDCFGSSD 110 (346)
T ss_pred cccEEEEEEecch-----hHHHHHHHHhccccceEEEecCCCccccchhhhhhccchhhhccccccEEEEEeccccccHH
Confidence 4566677776644 4567777777777777888764 44444344455677788875699999999999999999
Q ss_pred HHHHHHH
Q 015962 242 TLGMTLA 248 (397)
Q Consensus 242 ~L~~~L~ 248 (397)
+..+.|.
T Consensus 111 nF~k~l~ 117 (346)
T COG4092 111 NFAKMLS 117 (346)
T ss_pred HHHHHHH
Confidence 9999883
No 56
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=35.87 E-value=2.2e+02 Score=22.59 Aligned_cols=34 Identities=15% Similarity=0.041 Sum_probs=25.3
Q ss_pred HHHHHHhcCCceEEEEeccceeeeHHHHHHHHHh
Q 015962 216 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAA 249 (397)
Q Consensus 216 ~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~ 249 (397)
.+..+....+.+|++-+|+|..+..+.+...+..
T Consensus 68 ~~~~~~~~~~~d~v~~~d~D~~~~~~~~~~~~~~ 101 (156)
T cd00761 68 ARNAGLKAARGEYILFLDADDLLLPDWLERLVAE 101 (156)
T ss_pred HHHHHHHHhcCCEEEEECCCCccCccHHHHHHHH
Confidence 3344444348999999999999999888886443
No 57
>KOG2547 consensus Ceramide glucosyltransferase [Lipid transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=35.73 E-value=42 Score=34.79 Aligned_cols=99 Identities=9% Similarity=0.050 Sum_probs=51.8
Q ss_pred CEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccC-CchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHH
Q 015962 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGY-LELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLG 244 (397)
Q Consensus 166 ~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY-~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~ 244 (397)
...++|++-.++ |..-+.++.=.++|..+=--=|..+- -.+..|.-.++- +++.-..+|++-.|||+++.++.++
T Consensus 114 ~~ElLfcv~s~e---DpAi~vv~~Ll~kyp~VdAklf~gG~~vg~npKInN~mp-gy~~a~ydlvlisDsgI~m~pdtil 189 (431)
T KOG2547|consen 114 KYELLFCVESSE---DPAIEVVERLLKKYPNVDAKLFFGGEKVGLNPKINNMMP-GYRAAKYDLVLISDSGIFMKPDTIL 189 (431)
T ss_pred ceEEEEEEccCC---CcHHHHHHHHHhhCCCcceEEEEcccccccChhhhccCH-HHHHhcCCEEEEecCCeeecCchHH
Confidence 455677776554 22333444445556532000021111 123345443332 1222356699999999999999999
Q ss_pred HHHHhcCCCCceEEEEeccCcccccC
Q 015962 245 MTLAAHRTKPRVYVGCMKSGPVLARK 270 (397)
Q Consensus 245 ~~L~~~~~~~~lyiG~~~~~pv~rd~ 270 (397)
+.-.+....+ =+|-+..+|-..|.
T Consensus 190 dm~t~M~she--kmalvtq~py~~dr 213 (431)
T KOG2547|consen 190 DMATTMMSHE--KMALVTQTPYCKDR 213 (431)
T ss_pred HHHHhhhccc--ceeeecCCceeecc
Confidence 9887764322 23445444444333
No 58
>cd04191 Glucan_BSP_ModH Glucan_BSP_ModH catalyzes the elongation of beta-1,2 polyglucose chains of glucan. Periplasmic Glucan Biosynthesis protein ModH is a glucosyltransferase that catalyzes the elongation of beta-1,2 polyglucose chains of glucan, requiring a beta-glucoside as a primer and UDP-glucose as a substrate. Glucans are composed of 5 to 10 units of glucose forming a highly branched structure, where beta-1,2-linked glucose constitutes a linear backbone to which branches are attached by beta-1,6 linkages. In Escherichia coli, glucans are located in the periplasmic space, functioning as regulator of osmolarity. It is synthesized at a maximum when cells are grown in a medium with low osmolarity. It has been shown to span the cytoplasmic membrane.
Probab=34.52 E-value=2.4e+02 Score=27.09 Aligned_cols=134 Identities=10% Similarity=0.022 Sum_probs=69.9
Q ss_pred EecccccCCchhhHHHHHHHHHHhc-CCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCC---cc
Q 015962 199 RLEHIEGYLELSAKTKTYFATAVSM-WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGV---KY 274 (397)
Q Consensus 199 ~ldf~DsY~NLt~Ktl~~~~wa~~c-~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~~~pv~rd~~~---Kw 274 (397)
.+-+.....|.-.|+-..-...... .+.+|++-.|.|+.+.++.|...+......++ +|-+.......+..+ ++
T Consensus 68 ~v~~~~r~~~~g~Kag~l~~~~~~~~~~~~~i~~~DaD~~~~p~~l~~~v~~~~~~~~--vg~vq~~~~~~n~~~~~~~~ 145 (254)
T cd04191 68 RIYYRRRRENTGRKAGNIADFCRRWGSRYDYMVVLDADSLMSGDTIVRLVRRMEANPR--AGIIQTAPKLIGAETLFARL 145 (254)
T ss_pred cEEEEEcCCCCCccHHHHHHHHHHhCCCCCEEEEEeCCCCCCHHHHHHHHHHHHhCCC--EEEEeCCceeECCCCHHHHH
Confidence 3333333334445555544433332 47799999999999999999998877643333 233321100011111 11
Q ss_pred ccccccccCC---CC----CCCCCCCCCCceeeCHHHHHHHHHhc-----ccc-CCCCcchHHHHHHHhcCCC
Q 015962 275 YEPEYWKFGE---IG----NKYFRHATGQLYALSKDLATYISINQ-----HLL-HKYANEDVSLGSWFIGLDV 334 (397)
Q Consensus 275 yvp~~~~fg~---p~----~~YP~y~~G~gYvlS~dla~~I~~~~-----~~l-~~~~~EDV~vG~~l~~L~v 334 (397)
..-+...|.. .+ ...-.+|.|...++.++.+..+..-. .-+ ...-.||..+|..+...|-
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~Rr~al~~~~~~~~i~g~g~~~~~~l~eD~~l~~~~~~~G~ 218 (254)
T cd04191 146 QQFANRLYGPVFGRGLAAWQGGEGNYWGHNAIIRVAAFMEHCALPVLPGRPPFGGHILSHDFVEAALMRRAGW 218 (254)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCccCccceEEEEEHHHHHHhcCCccccCCCCCCCCeecHHHHHHHHHHHcCC
Confidence 0000000000 00 01123467999999999887753211 111 1234799999999876553
No 59
>PRK05454 glucosyltransferase MdoH; Provisional
Probab=32.92 E-value=4.8e+02 Score=29.28 Aligned_cols=202 Identities=12% Similarity=0.053 Sum_probs=100.1
Q ss_pred CCceeEEEEEeCCCCChH-HHHHHHHHhhhcchhhhhhhccCCEEEEEEeecCCCCCCch--HHHHHHHHhHcCCEEEec
Q 015962 125 KRKYFMVIGINTAFSSRK-RRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGIL--DKAIDAEEKMHGDFLRLE 201 (397)
Q Consensus 125 ~~~~~llI~V~S~~~~~~-rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~l--~~~I~~E~~~~~DIL~ld 201 (397)
...+.+.|+|.+.-...+ -+..|+.+..+-.. ......+.+ |++..+.+++-.. ..++.+=.++|++-..+-
T Consensus 121 ~~~~~VaVliP~yNEd~~~v~~~L~a~~~Sl~~----~~~~~~~e~-~vLdD~~d~~~~~~e~~~~~~L~~~~~~~~~i~ 195 (691)
T PRK05454 121 PPEARTAILMPIYNEDPARVFAGLRAMYESLAA----TGHGAHFDF-FILSDTRDPDIAAAEEAAWLELRAELGGEGRIF 195 (691)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHHHh----cCCCCCEEE-EEEECCCChhHHHHHHHHHHHHHHhcCCCCcEE
Confidence 344556666666544433 24677777765321 001224555 8887665321000 111222233443211111
Q ss_pred ccccCCchhhHHHHHHHHHHh-cCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCC---cc---
Q 015962 202 HIEGYLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGV---KY--- 274 (397)
Q Consensus 202 f~DsY~NLt~Ktl~~~~wa~~-c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~~~pv~rd~~~---Kw--- 274 (397)
+..--.|.-.|.-..-.+... ..+.+|++-.|-|+.+..+.|.+++......++ +|-+...+...+..+ ++
T Consensus 196 yr~R~~n~~~KaGNl~~~~~~~~~~~eyivvLDADs~m~~d~L~~lv~~m~~dP~--vGlVQt~~~~~n~~slfaR~qqf 273 (691)
T PRK05454 196 YRRRRRNVGRKAGNIADFCRRWGGAYDYMVVLDADSLMSGDTLVRLVRLMEANPR--AGLIQTLPVAVGADTLFARLQQF 273 (691)
T ss_pred EEECCcCCCccHHHHHHHHHhcCCCcCEEEEEcCCCCCCHHHHHHHHHHHhhCcC--EEEEeCCccCcCCCCHHHHHHHH
Confidence 222223444566655555443 247799999999999999999999876643333 354432222111111 10
Q ss_pred ----ccc------cccccCCCCCCCCCCCCCCceeeCHHHHHHHHH-----hc-cccCCCCcchHHHHHHHhcCC--CeE
Q 015962 275 ----YEP------EYWKFGEIGNKYFRHATGQLYALSKDLATYISI-----NQ-HLLHKYANEDVSLGSWFIGLD--VEH 336 (397)
Q Consensus 275 ----yvp------~~~~fg~p~~~YP~y~~G~gYvlS~dla~~I~~-----~~-~~l~~~~~EDV~vG~~l~~L~--v~~ 336 (397)
|-| ..|..| --+..|...++.++....+.. .. ..-...--||...|..+...| |..
T Consensus 274 ~~~~y~~~~~~G~~~w~~~------~g~f~G~naIiR~~af~~~~glp~L~g~~p~~~~~LseD~~~a~~l~~~GyrV~~ 347 (691)
T PRK05454 274 ATRVYGPLFAAGLAWWQGG------EGNYWGHNAIIRVKAFAEHCGLPPLPGRGPFGGHILSHDFVEAALMRRAGWGVWL 347 (691)
T ss_pred HHHHHHHHHHhhhhhhccC------ccccccceEEEEHHHHHHhcCCccccccCCCCCCcccHHHHHHHHHHHCCCEEEE
Confidence 000 001100 001246667888887665431 00 001123468999999996554 556
Q ss_pred ecC
Q 015962 337 VDD 339 (397)
Q Consensus 337 i~~ 339 (397)
+++
T Consensus 348 ~pd 350 (691)
T PRK05454 348 APD 350 (691)
T ss_pred cCc
Confidence 666
No 60
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.60 E-value=63 Score=24.24 Aligned_cols=18 Identities=17% Similarity=-0.025 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhhHhhhcc
Q 015962 20 WALFLCACSFCAGMSFTN 37 (397)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~ 37 (397)
+..++.++||++|++++.
T Consensus 19 pl~l~il~~f~~G~llg~ 36 (68)
T PF06305_consen 19 PLGLLILIAFLLGALLGW 36 (68)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 456677788888888765
No 61
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=29.59 E-value=8.3e+02 Score=27.28 Aligned_cols=133 Identities=17% Similarity=0.114 Sum_probs=72.4
Q ss_pred chhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCCce-EEEEec----cCcccccCCCcccccc-c-c
Q 015962 208 ELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV-YVGCMK----SGPVLARKGVKYYEPE-Y-W 280 (397)
Q Consensus 208 NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l-yiG~~~----~~pv~rd~~~Kwyvp~-~-~ 280 (397)
|.-.|.- .+..+.+..+.+|++-.|.|..+..+.|.+.+......+++ .++... ..|+.++-......|. . .
T Consensus 212 n~~~KAg-nLN~al~~a~gd~Il~lDAD~v~~pd~L~~~v~~f~~dp~v~~Vqtp~~f~~p~~~~~nl~~~~~~~~e~~~ 290 (713)
T TIGR03030 212 NVHAKAG-NINNALKHTDGELILIFDADHVPTRDFLQRTVGWFVEDPKLFLVQTPHFFVSPDPIERNLGTFRRMPNENEL 290 (713)
T ss_pred CCCCChH-HHHHHHHhcCCCEEEEECCCCCcChhHHHHHHHHHHhCCCEEEEeCCeeccCCCHHhhhhHHHHHhhhHHHH
Confidence 4345543 35666666788999999999999999888877665333333 222211 1122111100001110 0 0
Q ss_pred ccCC--CCC--CCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeEecCCCccc
Q 015962 281 KFGE--IGN--KYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDRRLCC 344 (397)
Q Consensus 281 ~fg~--p~~--~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~~~f~~ 344 (397)
+++. ++. .-..++.|++.++.+++...+---.. ..-.||..++.-+...| +...++.....
T Consensus 291 f~~~i~~g~~~~~~~~~~Gs~~~iRR~al~~iGGf~~---~~vtED~~l~~rL~~~G~~~~y~~~~~~~g 357 (713)
T TIGR03030 291 FYGLIQDGNDFWNAAFFCGSAAVLRREALDEIGGIAG---ETVTEDAETALKLHRRGWNSAYLDRPLIAG 357 (713)
T ss_pred HHHHHHHHHhhhCCeeecCceeEEEHHHHHHcCCCCC---CCcCcHHHHHHHHHHcCCeEEEeccccccc
Confidence 0000 000 01235679999999999887632111 12379999999886555 44566554443
No 62
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=27.74 E-value=71 Score=19.84 Aligned_cols=19 Identities=16% Similarity=0.448 Sum_probs=13.8
Q ss_pred HHHHHHhHHHHhhhHHHhh
Q 015962 83 IQSQDKRLDGLKTKITAVR 101 (397)
Q Consensus 83 ~~~~~~~~~~le~el~~~~ 101 (397)
+..+..+|+.||.+|+..+
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3456778888888887654
No 63
>PF04666 Glyco_transf_54: N-Acetylglucosaminyltransferase-IV (GnT-IV) conserved region; InterPro: IPR006759 The complex-type of oligosaccharides are synthesised through elongation by glycosyltransferases after trimming of the precursor oligosaccharides transferred to proteins in the endoplasmic reticulum. N-Acetylglucosaminyltransferases (GnTs) take part in the formation of branches in the biosynthesis of complex-type sugar chains. In vertebrates, six GnTs, designated as GnT-I to -VI, which catalyse the transfer of GlcNAc to the core mannose residues of Asn-linked sugar chains, have been identified. GnT-IV (2.4.1.145 from EC) catalyzes the transfer of GlcNAc from UDP-GlcNAc to the GlcNAc1-2Man1-3 arm of core oligosaccharide [Gn2(22)core oligosaccharide] and forms a GlcNAc1-4(GlcNAc1-2)Man1-3 structure on the core oligosaccharide (Gn3(2,4,2)core oligosaccharide). In some members the conserved region occupies all but the very N-terminal, where there is a signal sequence on all members. For other members the conserved region does not occupy the entire protein but is still to the N-terminal end of the protein [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0016020 membrane
Probab=27.46 E-value=3.3e+02 Score=27.23 Aligned_cols=120 Identities=18% Similarity=0.191 Sum_probs=57.3
Q ss_pred CCceeEEEEEeCCCCChHHHHHHHHHhhhcchhhhhhhccCCEEEEEEeecCCCC-CCchHHHHHHHHhHc---CCEEEe
Q 015962 125 KRKYFMVIGINTAFSSRKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATS-GGILDKAIDAEEKMH---GDFLRL 200 (397)
Q Consensus 125 ~~~~~llI~V~S~~~~~~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~-~~~l~~~I~~E~~~~---~DIL~l 200 (397)
+..+.|.|||.|-.. ++-+.+..|=++--+.+..-+ ...+.++-+++.+++. ...+...|..+-..| |=+..+
T Consensus 49 ~~~~~L~IGIpTV~R--~~~sYL~~TL~SLl~~ls~~E-r~~i~IvVllAd~Dp~~~~~~~~~i~~~f~~~i~sG~l~VI 125 (297)
T PF04666_consen 49 RTGKKLCIGIPTVKR--EKESYLLDTLASLLDGLSPEE-RKDIVIVVLLADTDPDYHPSVAQNISTRFADHIESGLLEVI 125 (297)
T ss_pred CCCCeEEEEeccccc--CCCchHHHHHHHHHHhCCHHH-hcCeEEEEEecCCChhhhHHHHHHHHHHhHHHHHhCceEEE
Confidence 444559999999643 233566666666533322222 2345555555655431 112222233221111 222222
Q ss_pred ccccc-CCch--------------hhHHHHHHHHHH--h-c-CCceEEEEeccceeeeHHHHHHHH
Q 015962 201 EHIEG-YLEL--------------SAKTKTYFATAV--S-M-WDAEFYIKVDDDVHVNLATLGMTL 247 (397)
Q Consensus 201 df~Ds-Y~NL--------------t~Ktl~~~~wa~--~-c-~~a~fvlKvDDDvfVn~~~L~~~L 247 (397)
+-..+ |-.+ ...++.-+.|+. . | ..++||+-..|||..-..-+..+.
T Consensus 126 ~~p~~~Yp~l~~l~~~~~d~~~rv~wrsKq~lDya~Lm~y~~~~~~YyL~LEDDVia~~~f~~~i~ 191 (297)
T PF04666_consen 126 SPPPSYYPDLDNLKRNFGDSEERVRWRSKQNLDYAFLMNYCQNLGDYYLQLEDDVIAAPGFLSRIK 191 (297)
T ss_pred ecccccCCChhhhhhcccChhhhhhHHHhhcccHHHHHHHHHhcCCeEEEecCCeEechhHHHHHH
Confidence 22222 2111 122333333332 1 3 368899999999998876544443
No 64
>PF09258 Glyco_transf_64: Glycosyl transferase family 64 domain; InterPro: IPR015338 Members of this entry catalyse the transfer reaction of N-acetylglucosamine and N-acetylgalactosamine from the respective UDP-sugars to the non-reducing end of [glucuronic acid]beta 1-3[galactose]beta 1-O-naphthalenemethanol, an acceptor substrate analogue of the natural common linker of various glycosylaminoglycans. They are also required for the biosynthesis of heparan-sulphate []. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0031227 intrinsic to endoplasmic reticulum membrane; PDB: 1ON6_B 1OMZ_B 1OMX_B 1ON8_B.
Probab=26.82 E-value=69 Score=30.94 Aligned_cols=101 Identities=14% Similarity=0.188 Sum_probs=51.8
Q ss_pred CCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccccccccCCCCCCCCCCCCCCceeeCHH
Q 015962 224 WDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKD 303 (397)
Q Consensus 224 ~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~~~pv~rd~~~Kwyvp~~~~fg~p~~~YP~y~~G~gYvlS~d 303 (397)
...+-|+-+|||+.++.+.|...+...+..+.-.+|..-........+++|-....| .+.|- -...++-++.+.
T Consensus 74 i~T~AVl~~DDDv~~~~~~l~faF~~W~~~pdrlVGf~~R~h~~~~~~~~~~Y~~~~-----~~~yS-mvLt~aaf~h~~ 147 (247)
T PF09258_consen 74 IETDAVLSLDDDVMLSCDELEFAFQVWREFPDRLVGFPPRSHSWDPSSGRWKYTSEW-----SNEYS-MVLTGAAFYHRY 147 (247)
T ss_dssp --SSEEEEEETTEEE-HHHHHHHHHHHCCSTTSEEES-EEEEEEE-ETTEEEEE-SS-----S--BS-EE-TTEEEEETH
T ss_pred cCcceEEEecCCcccCHHHHHHHHHHHHhChhheeCCccceeecCCCccccccccCC-----CCcch-hhhhhhHhhcch
Confidence 467889999999999999999888887766666778753111111123444221111 22332 223444455555
Q ss_pred HHHHHHHhc-c----cc-CCCCcchHHHHHHHh
Q 015962 304 LATYISINQ-H----LL-HKYANEDVSLGSWFI 330 (397)
Q Consensus 304 la~~I~~~~-~----~l-~~~~~EDV~vG~~l~ 330 (397)
......... . .+ ....=||+.+-..+.
T Consensus 148 yl~~Y~~~~p~~~r~~Vd~~~NCEDI~mNflvs 180 (247)
T PF09258_consen 148 YLELYTHWLPASIREYVDEHFNCEDIAMNFLVS 180 (247)
T ss_dssp HHHHHHT-S-HHHHHHHHHHTS-HHHHHHHHHH
T ss_pred HHHHHhcCcHHHHHHHHhccCCHHHHHHHHHHH
Confidence 544333210 0 11 122459998887774
No 65
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=25.57 E-value=5.3e+02 Score=23.67 Aligned_cols=121 Identities=13% Similarity=0.062 Sum_probs=65.7
Q ss_pred HHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCC-Cce-EEEE-eccCcccccCCCccccccccc-cC-----CCC
Q 015962 216 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTK-PRV-YVGC-MKSGPVLARKGVKYYEPEYWK-FG-----EIG 286 (397)
Q Consensus 216 ~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~-~~l-yiG~-~~~~pv~rd~~~Kwyvp~~~~-fg-----~p~ 286 (397)
++..+.+....+|++..|+|+.+.++.|.+.+...... +.+ ++|. +...........+.+..+.+. |+ ...
T Consensus 75 a~n~g~~~a~gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (241)
T cd06427 75 ACNYALAFARGEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACVQAPLNYYNARENWLTRMFALEYAAWFDYLLPGLAR 154 (241)
T ss_pred HHHHHHHhcCCCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEEeCceEeeCCCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45555554577999999999999999999888776422 333 3222 211000000000111000000 00 001
Q ss_pred CCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeEecC
Q 015962 287 NKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDD 339 (397)
Q Consensus 287 ~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~ 339 (397)
...+..++|++.++++++...+---.. ....||..++.=+...| +..++.
T Consensus 155 ~~~~~~~~g~~~~~rr~~~~~vgg~~~---~~~~eD~~l~~rl~~~G~r~~~~~~ 206 (241)
T cd06427 155 LGLPIPLGGTSNHFRTDVLRELGGWDP---FNVTEDADLGLRLARAGYRTGVLNS 206 (241)
T ss_pred cCCeeecCCchHHhhHHHHHHcCCCCc---ccchhhHHHHHHHHHCCceEEEecc
Confidence 123334688899999999888743222 22479999988775544 444443
No 66
>PF03452 Anp1: Anp1; InterPro: IPR005109 The members of this family (Anp1, Van1 and Mnn9) are membrane proteins required for proper Golgi function. These proteins colocalize within the cis Golgi, where they are physically associated in two distinct complexes [].
Probab=25.14 E-value=4.3e+02 Score=26.14 Aligned_cols=96 Identities=17% Similarity=0.072 Sum_probs=56.9
Q ss_pred cCCEEEEEEeecCCCCCCchHHHHHHHHh----------HcCCEEEe--cccccC-------Cc-----hhhHHHHHH-H
Q 015962 164 AKGIIIRFVIGHSATSGGILDKAIDAEEK----------MHGDFLRL--EHIEGY-------LE-----LSAKTKTYF-A 218 (397)
Q Consensus 164 ~~~i~~~FvlG~s~~~~~~l~~~I~~E~~----------~~~DIL~l--df~DsY-------~N-----Lt~Ktl~~~-~ 218 (397)
...|.+-|+++.+.. ++...+.|+.+.. .|+-|.++ ||.+.- ++ .-.+.++-. .
T Consensus 54 ~~lIsLgfLv~d~~e-~d~t~~~l~~~~~~~q~~~~~~~~F~~itIl~~df~~~~~~~~~~RH~~~~Q~~RR~~mAraRN 132 (269)
T PF03452_consen 54 HELISLGFLVSDSSE-FDNTLKILEAALKKLQSHGPESKRFRSITILRKDFGQQLSQDRSERHAFEVQRPRRRAMARARN 132 (269)
T ss_pred chheEEEEEcCCCch-hHHHHHHHHHHHHHHhccCcccCCcceEEEEcCCCcccccCchhhccchhhHHHHHHHHHHHHH
Confidence 456889999998873 2344445554432 35554443 564321 11 111222211 1
Q ss_pred HHHh---cCCceEEEEeccceeeeHHHHHHHHHhcCC---CCceEEEE
Q 015962 219 TAVS---MWDAEFYIKVDDDVHVNLATLGMTLAAHRT---KPRVYVGC 260 (397)
Q Consensus 219 wa~~---c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~---~~~lyiG~ 260 (397)
|+.. .+..+|++-.|-|+.-.++.|++-|-.+.. -|++|.+.
T Consensus 133 ~LL~~aL~p~~swVlWlDaDIv~~P~~lI~dli~~~kdIivPn~~~~~ 180 (269)
T PF03452_consen 133 FLLSSALGPWHSWVLWLDADIVETPPTLIQDLIAHDKDIIVPNCWRRY 180 (269)
T ss_pred HHHHhhcCCcccEEEEEecCcccCChHHHHHHHhCCCCEEccceeecc
Confidence 3321 368999999999999999999999987742 24455443
No 67
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=23.64 E-value=5.4e+02 Score=23.06 Aligned_cols=43 Identities=16% Similarity=0.308 Sum_probs=30.3
Q ss_pred HHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEE
Q 015962 218 ATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGC 260 (397)
Q Consensus 218 ~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~ 260 (397)
..+.+....+|++.+|+|..+.++.|...+......+...+|+
T Consensus 77 N~g~~~a~gd~i~~lD~D~~~~~~~l~~~~~~~~~~~~~~v~~ 119 (219)
T cd06913 77 NQAIAQSSGRYLCFLDSDDVMMPQRIRLQYEAALQHPNSIIGC 119 (219)
T ss_pred HHHHHhcCCCEEEEECCCccCChhHHHHHHHHHHhCCCcEEEE
Confidence 4444455789999999999999988877665553334445565
No 68
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=23.45 E-value=5e+02 Score=22.62 Aligned_cols=89 Identities=13% Similarity=0.052 Sum_probs=51.8
Q ss_pred HHHHHHHh-cCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEeccCcccccCCCccccc----cc----c--ccC
Q 015962 215 TYFATAVS-MWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKSGPVLARKGVKYYEP----EY----W--KFG 283 (397)
Q Consensus 215 ~~~~wa~~-c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~~~pv~rd~~~Kwyvp----~~----~--~fg 283 (397)
.++.++.. -.+.+|++-+|.|+.+.++.|..++........+..|+....+ +...|.-. .+ + ..+
T Consensus 70 ~g~~~a~~~~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~~~~~v~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 145 (183)
T cd06438 70 FGFRHLLNLADDPDAVVVFDADNLVDPNALEELNARFAAGARVVQAYYNSKN----PDDSWITRLYAFAFLVFNRLRPLG 145 (183)
T ss_pred HHHHHHHhcCCCCCEEEEEcCCCCCChhHHHHHHHHHhhCCCeeEEEEeeeC----CccCHHHHHHHHHHHHHHHHHHHH
Confidence 34444431 2468999999999999998888888776544556666653111 11112100 00 0 000
Q ss_pred CCCCCCCCCCCCCceeeCHHHHHH
Q 015962 284 EIGNKYFRHATGQLYALSKDLATY 307 (397)
Q Consensus 284 ~p~~~YP~y~~G~gYvlS~dla~~ 307 (397)
...-.-+.++.|+++++++++++.
T Consensus 146 ~~~~~~~~~~~G~~~~~rr~~l~~ 169 (183)
T cd06438 146 RSNLGLSCQLGGTGMCFPWAVLRQ 169 (183)
T ss_pred HHHcCCCeeecCchhhhHHHHHHh
Confidence 000112335789999999999887
No 69
>PF03742 PetN: PetN ; InterPro: IPR005497 PetN is a small hydrophobic protein, crucial for cytochrome b6-f complex assembly and/or stability. It is found in bacteria and plants. Cytochrome b6-f complex is composed of 4 large subunits: cytochrome b6, subunit IV (17 kDa polypeptide, petD), cytochrome f and the Rieske protein, as well as 4 small subunits: petG, petL, petM and petN. The complex functions as a dimer. The cytochrome b6-f complex mediates electron transfer between photosystem II (PSII) and photosystem I (PSI) [].; GO: 0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity, 0017004 cytochrome complex assembly, 0009512 cytochrome b6f complex; PDB: 2ZT9_H 2D2C_H 2E76_H 1VF5_U 2E75_H 2E74_H.
Probab=22.58 E-value=77 Score=20.75 Aligned_cols=23 Identities=17% Similarity=0.452 Sum_probs=19.9
Q ss_pred CchhHHHHHHHHHHhhHhhhccc
Q 015962 16 IPRKWALFLCACSFCAGMSFTNR 38 (397)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~ 38 (397)
++--|+.++.+|+|-..+.|=||
T Consensus 4 v~lgWaal~~~ftfSlalVVWGR 26 (29)
T PF03742_consen 4 VSLGWAALMVVFTFSLALVVWGR 26 (29)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhccceeEEEec
Confidence 45679999999999999998887
No 70
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=22.31 E-value=8.8e+02 Score=25.07 Aligned_cols=125 Identities=10% Similarity=0.119 Sum_probs=65.2
Q ss_pred HHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCCce--EEEEeccCc-ccccCCC--ccccccc--------ccc
Q 015962 216 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRV--YVGCMKSGP-VLARKGV--KYYEPEY--------WKF 282 (397)
Q Consensus 216 ~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~l--yiG~~~~~p-v~rd~~~--Kwyvp~~--------~~f 282 (397)
++.++.+..+.+|++..|+|..+..+.|.+.+......+.+ ..|.+...+ ....... .++..+. +..
T Consensus 122 AlN~gl~~s~g~~v~~~DaD~~~~~d~L~~l~~~f~~~~~v~~v~g~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~l~ 201 (439)
T TIGR03111 122 ALNAAIYNSIGKYIIHIDSDGKLHKDAIKNMVTRFENNPDIHAMTGVILTDKELIEKTKGRFLKLIRRCEYFEYAQAFLA 201 (439)
T ss_pred HHHHHHHHccCCEEEEECCCCCcChHHHHHHHHHHHhCCCeEEEEeEEecCchhhhhhcchhhhHhHHhHHHHHHHHHHh
Confidence 45566665678999999999999999998888766433333 224332211 0000000 0111110 000
Q ss_pred CCC---CCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHh---cCCCeEecCCCcc
Q 015962 283 GEI---GNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFI---GLDVEHVDDRRLC 343 (397)
Q Consensus 283 g~p---~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~---~L~v~~i~~~~f~ 343 (397)
|.+ ....+..++|++.++.++++..+---. +..-.||.-++.-+. +-.+....+..+.
T Consensus 202 ~r~~~s~~~~~~~~sGa~~~~Rr~~l~~vggf~---~~~i~ED~~l~~rl~~~~g~kv~~~~~a~~~ 265 (439)
T TIGR03111 202 GRNFESQVNSLFTLSGAFSAFRRETILKTQLYN---SETVGEDTDMTFQIRELLDGKVYLCENAIFY 265 (439)
T ss_pred hhHHHHhcCCeEEEccHHHhhhHHHHHHhCCCC---CCCcCccHHHHHHHHHhcCCeEEECCCCEEE
Confidence 000 001122357888888998877653211 112379999987553 2234444444443
No 71
>PF06072 Herpes_US9: Alphaherpesvirus tegument protein US9; InterPro: IPR009278 This family consists of several US9 and related proteins from the Alphaherpesviruses. The function of the US9 protein is unknown although in Bovine herpesvirus 5 Us9 is essential for the anterograde spread of the virus from the olfactory mucosa to the bulb [].; GO: 0019033 viral tegument
Probab=21.46 E-value=81 Score=24.11 Aligned_cols=16 Identities=25% Similarity=0.252 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhHhhhc
Q 015962 21 ALFLCACSFCAGMSFT 36 (397)
Q Consensus 21 ~~~~~~~~~~~~~~~~ 36 (397)
++++|++|+.+|.+++
T Consensus 42 ~~~~c~~S~~lG~~~~ 57 (60)
T PF06072_consen 42 VVALCVLSGGLGALVA 57 (60)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 4588999999998876
No 72
>PF13704 Glyco_tranf_2_4: Glycosyl transferase family 2
Probab=20.86 E-value=4.1e+02 Score=20.73 Aligned_cols=48 Identities=10% Similarity=0.214 Sum_probs=29.8
Q ss_pred cCCEEEecccccCCchhhHHHHHHHHHHh-cCCceEEEEeccceeeeHHH
Q 015962 194 HGDFLRLEHIEGYLELSAKTKTYFATAVS-MWDAEFYIKVDDDVHVNLAT 242 (397)
Q Consensus 194 ~~DIL~ldf~DsY~NLt~Ktl~~~~wa~~-c~~a~fvlKvDDDvfVn~~~ 242 (397)
+.++-...+...|..-... ....+.+.+ ..+++|++.+|-|=|+.++.
T Consensus 40 ~~~v~i~~~~~~~~~~~~~-~~~~~~~~~~~~~~dWvl~~D~DEfl~~~~ 88 (97)
T PF13704_consen 40 LPGVGIIRWVDPYRDERRQ-RAWRNALIERAFDADWVLFLDADEFLVPPP 88 (97)
T ss_pred CCCcEEEEeCCCccchHHH-HHHHHHHHHhCCCCCEEEEEeeeEEEecCC
Confidence 4555555555666443333 233333333 35899999999999988764
Done!