Query 015962
Match_columns 397
No_of_seqs 298 out of 1258
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 05:33:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015962.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015962hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j0a_A Beta-1,3-N-acetylglucos 99.9 3E-25 1E-29 215.3 14.7 194 126-347 11-217 (280)
2 1xhb_A Polypeptide N-acetylgal 91.8 3.7 0.00013 40.9 15.5 165 167-338 62-251 (472)
3 2d7i_A Polypeptide N-acetylgal 89.2 12 0.00041 38.6 17.0 159 168-333 146-324 (570)
4 1qg8_A Protein (spore coat pol 87.1 16 0.00053 32.4 15.5 117 215-339 78-208 (255)
5 2ffu_A Ppgalnact-2, polypeptid 85.0 19 0.00065 36.1 15.3 161 167-338 99-283 (501)
6 4fix_A UDP-galactofuranosyl tr 84.7 25 0.00084 37.3 16.5 117 215-333 258-403 (657)
7 2z86_A Chondroitin synthase; G 76.5 57 0.0019 33.4 15.6 117 216-333 165-316 (625)
8 3bcv_A Putative glycosyltransf 71.5 40 0.0014 29.3 11.3 165 166-340 34-220 (240)
9 2z86_A Chondroitin synthase; G 65.9 75 0.0026 32.5 13.6 156 166-339 404-566 (625)
10 4hg6_A Cellulose synthase subu 56.0 2.2E+02 0.0074 30.6 16.6 131 211-345 225-368 (802)
11 4dzn_A Coiled-coil peptide CC- 29.1 74 0.0025 19.8 3.7 28 75-102 3-30 (33)
12 2akf_A Coronin-1A; coiled coil 27.8 94 0.0032 19.5 4.0 24 75-98 7-30 (32)
13 1fo8_A Alpha-1,3-mannosyl-glyc 26.0 1.3E+02 0.0045 29.0 7.0 86 215-310 89-179 (343)
14 1vf5_H Protein PET N; photosyn 23.6 47 0.0016 20.8 2.0 24 15-38 3-26 (29)
15 2bo4_A Mannosylglycerate synth 23.0 3.3E+02 0.011 26.7 9.3 167 166-337 28-209 (397)
16 1pyi_A Protein (pyrimidine pat 22.4 1E+02 0.0035 23.4 4.4 31 82-112 49-79 (96)
17 2z5i_A TM, general control pro 21.9 1.1E+02 0.0038 21.5 4.1 22 81-102 12-33 (52)
No 1
>2j0a_A Beta-1,3-N-acetylglucosaminyltransferase manic FR; glycosyltransferase, developmental protein, transmembrane, G apparatus, notch signaling; 1.8A {Mus musculus} PDB: 2j0b_A*
Probab=99.92 E-value=3e-25 Score=215.32 Aligned_cols=194 Identities=17% Similarity=0.185 Sum_probs=132.4
Q ss_pred CceeEEEEEeCCCCC-hHHHHHHHHHhhhcchhhhhhhccCCEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEeccc-
Q 015962 126 RKYFMVIGINTAFSS-RKRRDSVRATWMPQGEKRKMLEEAKGIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHI- 203 (397)
Q Consensus 126 ~~~~llI~V~S~~~~-~~rR~aIR~TW~~~~~~l~~l~~~~~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~- 203 (397)
..-.|+|+|+|++.+ .+|+++||+||++.+.. . .||.+... +.. +... ..+++++.++.
T Consensus 11 ~~~~I~~~V~T~~~~~~~R~~~I~~TW~~~~~~-------~----~fifsd~~--d~~----l~~~--~~~~~~~~~~~~ 71 (280)
T 2j0a_A 11 QLGDIFIAVKTTWAFHRSRLDLLLDTWVSRIRQ-------Q----TFIFTDSP--DER----LQER--LGPHLVVTQCSA 71 (280)
T ss_dssp CGGGEEEEEECCGGGTTTTHHHHHHTGGGGSGG-------G----EEEEESSC--CHH----HHHH--HGGGEEECCC--
T ss_pred CcccEEEEEECcHHHHHHHHHHHHHHHhccCCC-------c----eEEEcCCC--ccc----cccc--ccccceeccccc
Confidence 345688899999984 57889999999997631 1 24333322 122 2222 35678888764
Q ss_pred -ccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCCceEEEEecc-CcccccCCCccccccccc
Q 015962 204 -EGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKPRVYVGCMKS-GPVLARKGVKYYEPEYWK 281 (397)
Q Consensus 204 -DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~~lyiG~~~~-~pv~rd~~~Kwyvp~~~~ 281 (397)
+++.+|+.|+...+.+.. +++++|++|+|||+|||+++|+++|..+++.+++|+|+... .|+. .++++|...+
T Consensus 72 ~~~~~~l~~K~~~~~~~~l-~~~~~Wf~~~DDDtyv~~~nL~~~L~~~d~~~~~YiG~~~~~~~~~----~~~~~~~~~~ 146 (280)
T 2j0a_A 72 EHSHPALSCKMAAEFDAFL-VSGLRWFCHVDDDNYVNPKALLQLLKTFPQDRDVYVGKPSLNRPIH----ASELQSKQRT 146 (280)
T ss_dssp -----CCCHHHHHHHHHHH-HHTCSEEEEEETTEEECHHHHHHHHTTSCTTSCCEEECEEC-------------------
T ss_pred cccccchHHHHHHHHHHHh-CCCCcEEEEeCCCcEEcHHHHHHHHHhCCCCCCEEEEEeccCcccc----ccccCccccc
Confidence 467899999999998764 36999999999999999999999999999999999999753 3432 1345554322
Q ss_pred cCCCCCCCCCCC-CCCceeeCHHHHHHHHHhcccc-------CCCCcchHHHHHHHh-cCCCeEecCCCcccCCC
Q 015962 282 FGEIGNKYFRHA-TGQLYALSKDLATYISINQHLL-------HKYANEDVSLGSWFI-GLDVEHVDDRRLCCGTP 347 (397)
Q Consensus 282 fg~p~~~YP~y~-~G~gYvlS~dla~~I~~~~~~l-------~~~~~EDV~vG~~l~-~L~v~~i~~~~f~~~~~ 347 (397)
+...|+ || +|+|||||++++++|+.....- .....||+++|.|+. .+||.+++...|+...+
T Consensus 147 ---~~~~~~-y~~GGaG~vlSr~~l~~l~~~~~~~~~~~~~~~~~~~dD~~lG~Cl~~~lGV~~~~~~~Fh~~~~ 217 (280)
T 2j0a_A 147 ---KLVRFW-FATGGAGFCINRQLALKMVPWASGSHFVDTSALIRLPDDCTVGYIIECKLGGRLQPSPLFHSHLE 217 (280)
T ss_dssp -------CC-EECGGGCEEEEHHHHHHHHHHHTTCTTSCCTTTTTSCHHHHHHHHHHHTTCCCEEECTTCCCSSS
T ss_pred ---cccccC-cccCCCEEEECHHHHHHHHHhhcccccccccccCCCCccHHHHHHHHhcCCCCceecccccCCCc
Confidence 222454 66 6789999999999999753322 223469999999998 99999999999986443
No 2
>1xhb_A Polypeptide N-acetylgalactosaminyltransferase 1; glycosyltransferase-A (GT-A); HET: NAG BMA; 2.50A {Mus musculus} SCOP: b.42.2.1 c.68.1.17
Probab=91.85 E-value=3.7 Score=40.92 Aligned_cols=165 Identities=15% Similarity=0.110 Sum_probs=85.4
Q ss_pred EEEEEEeecCCCCCCchHHHHHHHHhHcC-CEEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHH
Q 015962 167 IIIRFVIGHSATSGGILDKAIDAEEKMHG-DFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (397)
Q Consensus 167 i~~~FvlG~s~~~~~~l~~~I~~E~~~~~-DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~ 245 (397)
..++.|-..|. ++.....+++-.+.+. .+..+...+.. .+ ..+...+.+....+|++..|+|+.+..+.|..
T Consensus 62 ~EIIvVDd~S~--d~~t~~~l~~~~~~~~~~v~vi~~~~n~-G~----~~a~N~g~~~A~gd~i~flD~D~~~~p~~L~~ 134 (472)
T 1xhb_A 62 EEIVLVDDASE--RDFLKRPLESYVKKLKVPVHVIRMEQRS-GL----IRARLKGAAVSRGQVITFLDAHCECTAGWLEP 134 (472)
T ss_dssp EEEEEEECSCC--CGGGTHHHHHHHHSSSSCEEEEECSSCC-CH----HHHHHHHHHHCCSSEEEEEESSEEECTTCHHH
T ss_pred eEEEEEECCCC--cHHHHHHHHHHHHHCCCcEEEEECCCCC-Ch----HHHHHHHHHhccCCeEEEECCCeEeCccHHHH
Confidence 35555554443 2234445555555566 45555443322 22 22333444445689999999999999988877
Q ss_pred HHHhcCCCCc-eEEEEec--c-CcccccC-------CCccccccccc-c---------CC-CCCCCCCCCCCCceeeCHH
Q 015962 246 TLAAHRTKPR-VYVGCMK--S-GPVLARK-------GVKYYEPEYWK-F---------GE-IGNKYFRHATGQLYALSKD 303 (397)
Q Consensus 246 ~L~~~~~~~~-lyiG~~~--~-~pv~rd~-------~~Kwyvp~~~~-f---------g~-p~~~YP~y~~G~gYvlS~d 303 (397)
++......+. +..|.+. . ....... .-.|.....+. + .+ .....-+++.|++++++++
T Consensus 135 ll~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~ 214 (472)
T 1xhb_A 135 LLARIKHDRRTVVCPIIDVISDDTFEYMAGSDMTYGGFNWKLNFRWYPVPQREMDRRKGDRTLPVRTPTMAGGLFSIDRD 214 (472)
T ss_dssp HHHHHHHCTTEEEEEEEEEECSSSCCEECCCTTEEEEECTTCCEEEEECCHHHHHHTTTCTTSCEECSBCCSSSEEEEHH
T ss_pred HHHHHHhCCCEEEEeeeeeEcCCCceeccCCCcccceeeccceeecccCCHHHHhcccCCCCCcccCccccceeEEEEHH
Confidence 7766543333 3333321 1 1100000 00111110000 0 00 0022335688999999999
Q ss_pred HHHHHHHhccccCCCCcchHHHHHHHh--cCCCeEec
Q 015962 304 LATYISINQHLLHKYANEDVSLGSWFI--GLDVEHVD 338 (397)
Q Consensus 304 la~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~i~ 338 (397)
+...+---...+..+..||+-++.-+. |..+..+.
T Consensus 215 ~~~~iGgfde~~~~~g~ED~dl~~R~~~~G~~i~~~p 251 (472)
T 1xhb_A 215 YFQEIGTYDAGMDIWGGENLEISFRIWQCGGTLEIVT 251 (472)
T ss_dssp HHHHTTSCCTTSCTTCCCCSHHHHHHHHTTCEEEEEE
T ss_pred HHHHcCCCCCcccccCchhHHHHHHHHhcCCeEEEcc
Confidence 998875433444445579988876654 44444433
No 3
>2d7i_A Polypeptide N-acetylgalactosaminyltransferase 10; beta trefoil, rossmann fold; HET: NAG NGA UDP; 2.50A {Homo sapiens} PDB: 2d7r_A*
Probab=89.22 E-value=12 Score=38.61 Aligned_cols=159 Identities=11% Similarity=-0.015 Sum_probs=82.9
Q ss_pred EEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHH
Q 015962 168 IIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTL 247 (397)
Q Consensus 168 ~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L 247 (397)
.++.|-..|. ++++...|++..+.+..|..+...+.. .+.. +...+......+|++..|+|+.+..+-|..++
T Consensus 146 EIIVVDDgS~--D~tl~~~l~~~~~~~~~v~vi~~~~n~-G~~~----A~N~G~~~A~gd~i~fLD~D~~~~p~~L~~ll 218 (570)
T 2d7i_A 146 EIVLVDDFSD--REHLKKPLEDYMALFPSVRILRTKKRE-GLIR----TRMLGASVATGDVITFLDSHCEANVNWLPPLL 218 (570)
T ss_dssp EEEEEECSCC--CGGGTHHHHHHHTTSTTEEEEECSSCC-CHHH----HHHHHHHHCCSSEEEECCSSEEECTTCSHHHH
T ss_pred EEEEEECCCC--cHHHHHHHHHHHHhCCeEEEEECCCCC-CHHH----HHHHHHHhcCCCEEEEEcCCccccccHHHHHH
Confidence 5555554444 334355566655666666555443321 2322 23333333467999999999999987777766
Q ss_pred HhcCCCCceEEEE-ec--cC-cc-ccc---CC----Ccccccccc-------ccCCC-CCCCCCCCCCCceeeCHHHHHH
Q 015962 248 AAHRTKPRVYVGC-MK--SG-PV-LAR---KG----VKYYEPEYW-------KFGEI-GNKYFRHATGQLYALSKDLATY 307 (397)
Q Consensus 248 ~~~~~~~~lyiG~-~~--~~-pv-~rd---~~----~Kwyvp~~~-------~fg~p-~~~YP~y~~G~gYvlS~dla~~ 307 (397)
......+.+.+|. +. .+ .. .+. .. -.|.....+ .+..+ .....+++.|+++++++++...
T Consensus 219 ~~l~~~~~~vv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~~~~ 298 (570)
T 2d7i_A 219 DRIARNRKTIVCPMIDVIDHDDFRYETQAGDAMRGAFDWEMYYKRIPIPPELQKADPSDPFESPVMAGGLFAVDRKWFWE 298 (570)
T ss_dssp HHHHHCTTEEEEEEEEEECTTTCCEECCTTSSCEEEECTTCCEEEECCCTTTCCSSTTSCEECSSCCSSSEEEEHHHHHH
T ss_pred HHHHhCCCEEEeeeeeccCCCchhhccccCCcccccccccccccccccchhhhccCCCcceecccccceEEEEEHHHHHh
Confidence 6553333444443 21 11 00 000 00 001100000 00000 0112345789999999999988
Q ss_pred HHHhccccCCCCcchHHHHHHHhcCC
Q 015962 308 ISINQHLLHKYANEDVSLGSWFIGLD 333 (397)
Q Consensus 308 I~~~~~~l~~~~~EDV~vG~~l~~L~ 333 (397)
+---...+..+..||+-+..-+...|
T Consensus 299 iGgfDe~~~~~g~ED~dl~~Rl~~~G 324 (570)
T 2d7i_A 299 LGGYDPGLEIWGGEQYEISFKVWMCG 324 (570)
T ss_dssp TTSSCTTCCSSSSHHHHHHHHHHHTT
T ss_pred cCCCCCcccccCcchHHHHHHHHhCC
Confidence 75433444444579998876664443
No 4
>1qg8_A Protein (spore coat polysaccharide biosynthesis P SPSA); glycosyltransferase, transferase; 1.50A {Bacillus subtilis} SCOP: c.68.1.1 PDB: 1h7q_A* 1h7l_A 1qgq_A* 1qgs_A*
Probab=87.09 E-value=16 Score=32.41 Aligned_cols=117 Identities=10% Similarity=-0.046 Sum_probs=67.1
Q ss_pred HHHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcC--CCCceEEEEec----c--CcccccCCCccccccccccCCCC
Q 015962 215 TYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR--TKPRVYVGCMK----S--GPVLARKGVKYYEPEYWKFGEIG 286 (397)
Q Consensus 215 ~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~--~~~~lyiG~~~----~--~pv~rd~~~Kwyvp~~~~fg~p~ 286 (397)
..+..+.+..+.+|++..|+|.++.++.|...+.... +.-.+..|.+. . +... ..+..|.... .
T Consensus 78 ~a~N~gi~~a~g~~i~~lD~Dd~~~~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~----~ 149 (255)
T 1qg8_A 78 ALINQAIEMAEGEYITYATDDNIYMPDRLLKMVRELDTHPEKAVIYSASKTYHLNENRDIV----KETVRPAAQV----T 149 (255)
T ss_dssp HHHHHHHHHCCCSEEEEEETTEEECTTHHHHHHHHHHHCTTCCEEEEEEEEEEEC---CEE----EEEEECCCSC----B
T ss_pred HHHHHHHHHcCCCEEEEeCCCCccChHHHHHHHHHHHhCCCceEEEeceEEEEeCCCCcch----hhccCchHHH----H
Confidence 3455555545889999999999999888877776553 23344444432 1 1111 1111221110 1
Q ss_pred CCCCCCCCCCceeeCHHHHHHHHHhc-----cccCCCCcchHHHHHHHhcCC-CeEecC
Q 015962 287 NKYFRHATGQLYALSKDLATYISINQ-----HLLHKYANEDVSLGSWFIGLD-VEHVDD 339 (397)
Q Consensus 287 ~~YP~y~~G~gYvlS~dla~~I~~~~-----~~l~~~~~EDV~vG~~l~~L~-v~~i~~ 339 (397)
.....+..|++.++.++++..+-... ........||..+..-+...+ +..++.
T Consensus 150 ~~~~~~~~~~~~~~rr~~~~~~g~~f~~~~~~~~~~~~~eD~~~~~r~~~~g~~~~~~~ 208 (255)
T 1qg8_A 150 WNAPCAIDHCSVMHRYSVLEKVKEKFGSYWDESPAFYRIGDARFFWRVNHFYPFYPLDE 208 (255)
T ss_dssp SCCTTTSCGGGEEEETHHHHHHHHHHSSSSCCCGGGSTTHHHHHHHHHTTTCCBEEEEE
T ss_pred HhhcCCCccceEEEEHHHHHhhcccccccccCCcccchHHHHHHHHHHHHhCCEEEecC
Confidence 12344578999999999999876211 011223579998887775433 333433
No 5
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2, protein-UDP; ppgalnact, mucin, glycosyltransferase; HET: UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Probab=85.05 E-value=19 Score=36.14 Aligned_cols=161 Identities=12% Similarity=-0.018 Sum_probs=82.2
Q ss_pred EEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHH
Q 015962 167 IIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMT 246 (397)
Q Consensus 167 i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~ 246 (397)
..+++|-.-|. ++++. ...+.+..+..+...+ |.- ...+...+......+|++..|+|+.+.++.|..+
T Consensus 99 ~EIIvVDDgS~--D~t~~----~~~~~~~~v~vi~~~~---n~G--~~~A~N~G~~~A~gd~i~flD~D~~~~p~~L~~l 167 (501)
T 2ffu_A 99 KEIILVDDYSN--DPEDG----ALLGKIEKVRVLRNDR---REG--LMRSRVRGADAAQAKVLTFLDSHCECNEHWLEPL 167 (501)
T ss_dssp EEEEEEECSCS--CTHHH----HGGGGBTTEEEEECSS---CCH--HHHHHHHHHHHCCSSEEEECCSSEEECTTCHHHH
T ss_pred eeEEEEECCCC--chHHH----HHHhcCCCEEEEECCC---CcC--HHHHHHHHHHhcCCCEEEEECCCcccCccHHHHH
Confidence 45666655444 23322 2234455555554433 222 2233444444447899999999999998887777
Q ss_pred HHhcCCCCceEEEE-ec--c-Cccc--------cc-----CCCccc-ccccc---ccCCC-CCCCCCCCCCCceeeCHHH
Q 015962 247 LAAHRTKPRVYVGC-MK--S-GPVL--------AR-----KGVKYY-EPEYW---KFGEI-GNKYFRHATGQLYALSKDL 304 (397)
Q Consensus 247 L~~~~~~~~lyiG~-~~--~-~pv~--------rd-----~~~Kwy-vp~~~---~fg~p-~~~YP~y~~G~gYvlS~dl 304 (397)
+......+...++. +. . .... +. ...+|. .+... ...++ .....+++.|++.++++++
T Consensus 168 l~~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~irr~~ 247 (501)
T 2ffu_A 168 LERVAEDRTRVVSPIIDVINMDNFQYVGASADLKGGFDWNLVFKWDYMTPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFY 247 (501)
T ss_dssp HHHHHHCTTEEEEEEEEEECTTTCCEECBCSSEEEEECTTCCEEEEECCHHHHHHTSSCTTSCEECSSCCSSSEEEEHHH
T ss_pred HHHHHhCCCeEEEeeeccCcCCCceeecCCcccceEeeecCCCccccCCHHHHhhccCCCCCcccCccccceEEEEEHHH
Confidence 76653333333333 21 1 0000 00 000110 11000 00000 1122356789999999999
Q ss_pred HHHHHHhccccCCCCcchHHHHHHHh--cCCCeEec
Q 015962 305 ATYISINQHLLHKYANEDVSLGSWFI--GLDVEHVD 338 (397)
Q Consensus 305 a~~I~~~~~~l~~~~~EDV~vG~~l~--~L~v~~i~ 338 (397)
...+-.-...+..+..||+-+..-+. |..+..+.
T Consensus 248 ~~~iGgfde~~~~~g~ED~dl~~Rl~~~G~~i~~~p 283 (501)
T 2ffu_A 248 FEELGKYDMMMDVWGGENLEISFRVWQCGGSLEIIP 283 (501)
T ss_dssp HHHTTCCCTTCCSSSSHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHhCCCCccccccCcchHHHHHHHHhcCCeEEEcc
Confidence 98875433444445589998876554 44444333
No 6
>4fix_A UDP-galactofuranosyl transferase GLFT2; CAZY GT-2 family, glycosyltrans carbohydrate binding, membrane; 2.45A {Mycobacterium tuberculosis} PDB: 4fiy_A*
Probab=84.71 E-value=25 Score=37.27 Aligned_cols=117 Identities=17% Similarity=0.118 Sum_probs=65.5
Q ss_pred HHHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcC--CCCceEEEEec--cCc--------ccccCCCccc-cccccc
Q 015962 215 TYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR--TKPRVYVGCMK--SGP--------VLARKGVKYY-EPEYWK 281 (397)
Q Consensus 215 ~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~--~~~~lyiG~~~--~~p--------v~rd~~~Kwy-vp~~~~ 281 (397)
.+++.|....+++|++..|||+.+..+.|..++.... +...++.|.+. ..+ ........|. .|...+
T Consensus 258 ~Gl~~A~g~~~~dyIlfLD~D~~~~pd~L~~ll~~l~~~~~~~~vg~~il~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 337 (657)
T 4fix_A 258 RVMYEALKNTDCQQILFMDDDIRLEPDSILRVLAMHRFAKAPMLVGGQMLNLQEPSHLHIMGEVVDRSIFMWTAAPHAEY 337 (657)
T ss_dssp HHHHHHHHHCCCSEEEEECSSEEECTHHHHHHHHHHHHBSSCCEEEEEEEETTSTTEECCSCEEEETTTTEEEECTTCCS
T ss_pred HHHHHHHhcCCCCEEEEECCCCccChhHHHHHHHHHHhCCCcEEEEeEEecCCCCceeeecccEeccccccccccccccc
Confidence 4566665434789999999999999988888776543 22233333442 111 1100000000 000000
Q ss_pred ---cC-------------CCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 015962 282 ---FG-------------EIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 333 (397)
Q Consensus 282 ---fg-------------~p~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~ 333 (397)
|+ ........|++|.+.++.+++...+---.. -.+..||+-++.=+...|
T Consensus 338 ~~~f~~~~l~~~~~~~~~~~~~~~v~~~~g~~~lirr~v~~~vGgfd~--~F~~~ED~Dl~lR~~~~G 403 (657)
T 4fix_A 338 DHDFAEYPLNDNNSRSKLLHRRIDVDYNGWWTCMIPRQVAEELGQPLP--LFIKWDDADYGLRAAEHG 403 (657)
T ss_dssp CEETTTSCSSCSSHHHHGGGBCCCCSBCCTTEEEEEHHHHHHHCSCCS--CSSSSHHHHHHHHHHHTT
T ss_pred cccccccccccccccccccccceeccccchhHhHhhHHHHHHhCCChh--HhccCcHHHHHHHHHHcC
Confidence 00 011223458899999999999988743211 123569999988775544
No 7
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=76.54 E-value=57 Score=33.40 Aligned_cols=117 Identities=15% Similarity=0.123 Sum_probs=63.4
Q ss_pred HHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcCCCC-ceEEEEec---cCc--cc---ccC----------------
Q 015962 216 YFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHRTKP-RVYVGCMK---SGP--VL---ARK---------------- 270 (397)
Q Consensus 216 ~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~~~~-~lyiG~~~---~~p--v~---rd~---------------- 270 (397)
.+..+....+.+|++..|+|..+..+.|..++......+ ...+|... ... .. ...
T Consensus 165 a~N~g~~~a~g~~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (625)
T 2z86_A 165 VRNLGLRAAKYNYVAILDCDMAPNPLWVQSYMELLAVDDNVALIGPRKYIDTSKHTYLDFLSQKSLINEIPEIITNNQVA 244 (625)
T ss_dssp HHHHHHHHCCSSEEEEECTTEEECTTHHHHHHHHHHHCTTEEEECCEEEECCTTCCHHHHHHSTTGGGTSCC--------
T ss_pred HHHHHHHhCCcCEEEEECCCCCCCHHHHHHHHHHHhcCCceEEEEeeeeccCcccchhhcccchHHhhhcchhccCCchh
Confidence 334444445789999999999999888877776653222 23334321 111 00 000
Q ss_pred -------CCcccccccc---ccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC
Q 015962 271 -------GVKYYEPEYW---KFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD 333 (397)
Q Consensus 271 -------~~Kwyvp~~~---~fg~p~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~ 333 (397)
...|...... .+. .......++.|++.+++++++..+---...+..+..||.-++.=+...|
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~rr~~l~~iGgfde~~~~~g~ED~dl~~Rl~~~G 316 (625)
T 2z86_A 245 GKVEQNKSVDWRIEHFKNTDNLR-LCNTPFRFFSGGNVAFAKKWLFRAGWFDEEFTHWGGEDNEFGYRLYREG 316 (625)
T ss_dssp -------CCCTHHHHHHHTTTTT-TCSCGGGGCCTTEEEEETHHHHHHCCCCTTCSSCCCHHHHHHHHHHHTT
T ss_pred hhhccCCccccchhhhccccccc-ccCCceeEEeeceeeeEHHHHHHhCCCccccccCCcchhhhhhhHHhCC
Confidence 0011100000 000 0011123478999999999999874323334444579999987775444
No 8
>3bcv_A Putative glycosyltransferase protein; protein structure initiative II, PSI-II NYSGXRC, structural genomics; 2.35A {Bacteroides fragilis}
Probab=71.48 E-value=40 Score=29.26 Aligned_cols=165 Identities=11% Similarity=-0.003 Sum_probs=80.1
Q ss_pred CEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHH
Q 015962 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (397)
Q Consensus 166 ~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~ 245 (397)
.+.++.|-..+. +...+.+++-.+.+..|..+. .+ |.- .-.+...+.+....+|++.+|+|.++.++.|..
T Consensus 34 ~~eiIvvDd~S~---d~t~~~~~~~~~~~~~i~~i~-~~---n~G--~~~a~N~g~~~a~g~~i~~lD~Dd~~~~~~l~~ 104 (240)
T 3bcv_A 34 DIEIILIDDESP---DNCPKICDDYAAQYPNIKVIH-KK---NAG--LGMACNSGLDVATGEYVAFCDSDDYVDSDMYMT 104 (240)
T ss_dssp SEEEEEEECCCS---SSHHHHHHHHHHHCSSEEEEE-CC---CCC--HHHHHHHHHHHCCSSEEEECCTTCCCCTTHHHH
T ss_pred CeEEEEEECCCC---cCHHHHHHHHHhhCCCEEEEE-CC---CCC--hHHHHHHHHHHcCCCEEEEECCCCcCCHHHHHH
Confidence 466666655443 233444555455666665554 22 322 223344444444789999999999999888777
Q ss_pred HHHhcCC-CCceEEEEec----cCc----ccccC-CCcccccccc------ccCCCCCCC---C-CCCCCCceeeCHHHH
Q 015962 246 TLAAHRT-KPRVYVGCMK----SGP----VLARK-GVKYYEPEYW------KFGEIGNKY---F-RHATGQLYALSKDLA 305 (397)
Q Consensus 246 ~L~~~~~-~~~lyiG~~~----~~p----v~rd~-~~Kwyvp~~~------~fg~p~~~Y---P-~y~~G~gYvlS~dla 305 (397)
++..... ...+.+|... .+. +...+ ...++..... .++ ....+ + ...+|++.++.++++
T Consensus 105 l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~rr~~~ 183 (240)
T 3bcv_A 105 MYNVAQKYTCDAVFTGLKRITMAGIPTGTVTHQKEFKLYKNKNEIHTLLKDLIA-SDPYAREERAIQVSAKVVLYRRNLI 183 (240)
T ss_dssp HHHHHHHHTCSEEEC--------------------CEEECSHHHHHHHHGGGTS-SCHHHHHHHHHHHTCSCEEEEHHHH
T ss_pred HHHHHHhcCCCEEEEeeEEEccCCccccccccccccccccCHHHHHHHHHHHhh-cchhhccccccccchhheeeeHHHH
Confidence 7765532 3344444321 111 11000 0011111000 000 00000 0 013578899999999
Q ss_pred HHHHHhccccCCCCcchHHHHHHHhcC--CCeEecCC
Q 015962 306 TYISINQHLLHKYANEDVSLGSWFIGL--DVEHVDDR 340 (397)
Q Consensus 306 ~~I~~~~~~l~~~~~EDV~vG~~l~~L--~v~~i~~~ 340 (397)
..+-.....-..+..||+-+..-+... .+..++..
T Consensus 184 ~~~g~~f~~~~~~~~eD~~~~~r~~~~g~~i~~~~~~ 220 (240)
T 3bcv_A 184 EKKHLRFVSERILPSEDLIFNVDVLANSNIVCVLPQT 220 (240)
T ss_dssp HHTTCCCCCTTTCTTHHHHHHHHHHTTCSCEEECC--
T ss_pred HHcCCccCCCCCccCCCHHHHHHHHHhCCEEEEECCC
Confidence 885311111112346999998766544 45555554
No 9
>2z86_A Chondroitin synthase; GT-A, glycosyltransferase A, fold; HET: UGA UDP; 2.40A {Escherichia coli} PDB: 2z87_A*
Probab=65.87 E-value=75 Score=32.47 Aligned_cols=156 Identities=10% Similarity=0.037 Sum_probs=78.4
Q ss_pred CEEEEEEeecCCCCCCchHHHHHHHHhHcCCEEEecccccCCchhhHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHH
Q 015962 166 GIIIRFVIGHSATSGGILDKAIDAEEKMHGDFLRLEHIEGYLELSAKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGM 245 (397)
Q Consensus 166 ~i~~~FvlG~s~~~~~~l~~~I~~E~~~~~DIL~ldf~DsY~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~ 245 (397)
.+.++.|-..|. +.....+.+-.+.+..+..+. . .|.. .-.++..+......+|++..|+|.++.++.|..
T Consensus 404 ~~eiivvdd~S~---d~t~~~~~~~~~~~~~i~~~~-~---~n~G--~~~a~n~g~~~a~g~~i~~ld~D~~~~~~~l~~ 474 (625)
T 2z86_A 404 DLEVCICDDGST---DDTLRILQEHYANHPRVRFIS-Q---KNKG--IGSASNTAVRLCRGFYIGQLDSDDFLEPDAVEL 474 (625)
T ss_dssp SEEEEEEEESCS---SSHHHHHHHHHTTCTTEEEEE-E---CCCC--HHHHHHHHHHHCCSSEEEECCTTCEECTTHHHH
T ss_pred CeEEEEEECcCC---hhHHHHHHHHHhhCCcEEEEe-C---CCCC--HHHHHHHHHHhcCCCEEEEECCCcccChhHHHH
Confidence 466666665554 223334444344455555543 2 2321 223344455444789999999999999988887
Q ss_pred HHHhcC--CCCceEEEEec----cCcccccCCCccccccccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhccccCCCC
Q 015962 246 TLAAHR--TKPRVYVGCMK----SGPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQHLLHKYA 319 (397)
Q Consensus 246 ~L~~~~--~~~~lyiG~~~----~~pv~rd~~~Kwyvp~~~~fg~p~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~ 319 (397)
.+.... +.-.+..|... .+...... +..|.. . +......++.|.+.++.+++...+---...+ ..
T Consensus 475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~-~---~~~~~~~~~~~~~~~~~r~~~~~~ggfd~~~--~~ 545 (625)
T 2z86_A 475 CLDEFRKDLSLACVYTTNRNIDREGNLISNG---YNWPIY-S---REKLTSAMICHHFRMFTARAWNLTEGFNESI--SN 545 (625)
T ss_dssp HHHHHHHCTTCSEEEEEEEEECTTSCEEEEC---CCCSSC-C---HHHHTTSCCCCSCEEEEHHHHTTTTCCCSSC--SS
T ss_pred HHHHHHhCCCeeEEEeeeEEECCCCCEeccC---cccccC-C---HHHHhhcccCCceEEEEHHHHHHhCCCCCcc--CC
Confidence 776542 22223323221 12221110 111110 0 0011223456788899988765543211222 24
Q ss_pred cchHHHHHHHhcCC-CeEecC
Q 015962 320 NEDVSLGSWFIGLD-VEHVDD 339 (397)
Q Consensus 320 ~EDV~vG~~l~~L~-v~~i~~ 339 (397)
.||.-+..-+...| +.+++.
T Consensus 546 ~eD~dl~~r~~~~g~~~~~~~ 566 (625)
T 2z86_A 546 AVDYDMYLKLSEVGPFKHINK 566 (625)
T ss_dssp CHHHHHHHHHTTTSCEEEEEE
T ss_pred hHHHHHHHHHHHhCCEEEeCC
Confidence 69998877665444 334433
No 10
>4hg6_A Cellulose synthase subunit A; membrane translocation, cellulose synthesis, UDP-GLC binding membrane, transferase; HET: BGC UDP LDA; 3.25A {Rhodobacter sphaeroides}
Probab=55.98 E-value=2.2e+02 Score=30.56 Aligned_cols=131 Identities=13% Similarity=-0.020 Sum_probs=69.7
Q ss_pred hHHHHHHHHHHhcCCceEEEEeccceeeeHHHHHHHHHhcC--CCCceEEEEec--c-CcccccCCCccccc-ccc-ccC
Q 015962 211 AKTKTYFATAVSMWDAEFYIKVDDDVHVNLATLGMTLAAHR--TKPRVYVGCMK--S-GPVLARKGVKYYEP-EYW-KFG 283 (397)
Q Consensus 211 ~Ktl~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~~L~~~~--~~~~lyiG~~~--~-~pv~rd~~~Kwyvp-~~~-~fg 283 (397)
.|.- .+..+.+..+.+|++.+|+|+.+..+.|...+.... ++-.+..|... + .+..+....-...+ +.. ++.
T Consensus 225 GKa~-alN~gl~~a~gd~Il~lDaD~~~~pd~L~~lv~~~~~dp~v~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (802)
T 4hg6_A 225 AKAG-NMSAALERLKGELVVVFDADHVPSRDFLARTVGYFVEDPDLFLVQTPHFFINPDPIQRNLALGDRCPPENEMFYG 303 (802)
T ss_dssp HHHH-HHHHHHHHCCCSEEEECCTTEEECTTHHHHHHHHHHHSSSCCEEECCCCBSSCCHHHHHHTCCTTSCCTTHHHHH
T ss_pred cchH-HHHHHHHhcCCCEEEEECCCCCcChHHHHHHHHHHhcCCCeEEEeccEEEeCCchHhhhhhHHhhhhHHHHHHHH
Confidence 3443 355555555889999999999999988888777652 22223323221 1 11111100000000 000 000
Q ss_pred C--C--CCCCCCCCCCCceeeCHHHHHHHHHhccccCCCCcchHHHHHHHhcCC--CeEecCCCcccC
Q 015962 284 E--I--GNKYFRHATGQLYALSKDLATYISINQHLLHKYANEDVSLGSWFIGLD--VEHVDDRRLCCG 345 (397)
Q Consensus 284 ~--p--~~~YP~y~~G~gYvlS~dla~~I~~~~~~l~~~~~EDV~vG~~l~~L~--v~~i~~~~f~~~ 345 (397)
. . ...-.+++.|++.++.+++.+.+---. .....||..++.-+...| +..+++....+.
T Consensus 304 ~~~~~~~~~~~~~~~G~~~~~Rr~al~~vGgf~---~~~~~ED~~l~~rl~~~G~ri~~~~~~~~~~~ 368 (802)
T 4hg6_A 304 KIHRGLDRWGGAFFCGSAAVLRRRALDEAGGFA---GETITEDAETALEIHSRGWKSLYIDRAMIAGL 368 (802)
T ss_dssp THHHHHHHTTCCCCCSSSEEEEHHHHHHHTTCC---CSSSSHHHHHHHHHHTTTCCEEECCCCCEEEC
T ss_pred HHHhhHhhcCCceecccchhhhHHHHHHcCCcC---CCCcchHHHHHHHHHHcCCeEEEecCCEEEec
Confidence 0 0 000113467999999999998873211 112359999998886554 455555544443
No 11
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=29.13 E-value=74 Score=19.84 Aligned_cols=28 Identities=29% Similarity=0.469 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHHHhhh
Q 015962 75 KLAMVEQAIQSQDKRLDGLKTKITAVRA 102 (397)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~le~el~~~~~ 102 (397)
|+..-.+-|-.|.|.|+.|.-|+|+.++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3334345677888899999999888764
No 12
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=27.81 E-value=94 Score=19.47 Aligned_cols=24 Identities=21% Similarity=0.394 Sum_probs=17.6
Q ss_pred hHHHHHHHHHHHHHhHHHHhhhHH
Q 015962 75 KLAMVEQAIQSQDKRLDGLKTKIT 98 (397)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~le~el~ 98 (397)
+|.+-.-.+|+|+++++.||.-..
T Consensus 7 ~~r~l~~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 7 DVRNLNAIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444478999999999997654
No 13
>1fo8_A Alpha-1,3-mannosyl-glycoprotein beta-1,2-N- acetylglucosaminyltransferase; methylmercury derivative, N- acetylglucosaminyltransferase I; 1.40A {Oryctolagus cuniculus} SCOP: c.68.1.10 PDB: 1fo9_A 1foa_A* 2apc_A* 2am3_A* 2am4_A* 2am5_A*
Probab=25.98 E-value=1.3e+02 Score=29.05 Aligned_cols=86 Identities=14% Similarity=0.146 Sum_probs=47.0
Q ss_pred HHHHHHHhcCCceEEEEeccceeeeHHHHHH---HHHhcCCCCceEEEEecc--CcccccCCCccccccccccCCCCCCC
Q 015962 215 TYFATAVSMWDAEFYIKVDDDVHVNLATLGM---TLAAHRTKPRVYVGCMKS--GPVLARKGVKYYEPEYWKFGEIGNKY 289 (397)
Q Consensus 215 ~~~~wa~~c~~a~fvlKvDDDvfVn~~~L~~---~L~~~~~~~~lyiG~~~~--~pv~rd~~~Kwyvp~~~~fg~p~~~Y 289 (397)
.++.++.+..++++++-+|||+.+.++-+.- .|..+...++++ |+.+ .+...... .-..+...|+
T Consensus 89 ~al~~vf~~~~~~~vIiLEDDl~~spdF~~y~~~~l~~y~~D~~I~--~ISa~n~~g~~~~~-~~~~~~~lyr------- 158 (343)
T 1fo8_A 89 WALGQIFHNFNYPAAVVVEDDLEVAPDFFEYFQATYPLLKADPSLW--CVSAWNDNGKEQMV-DSSKPELLYR------- 158 (343)
T ss_dssp HHHHHHHTTSCCSEEEEEETTEEECTTHHHHHHHHHHHHHHCTTEE--EEESCCTTCBGGGS-CTTCTTCEEE-------
T ss_pred HHHHHHHHhccCCEEEEEcCCCeECHHHHHHHHHHHHHhhcCCcEE--EEecccCccccccc-cccCcceEEe-------
Confidence 4445554444799999999999999976533 333333445664 3321 11100000 0011222332
Q ss_pred CCCCCCCceeeCHHHHHHHHH
Q 015962 290 FRHATGQLYALSKDLATYISI 310 (397)
Q Consensus 290 P~y~~G~gYvlS~dla~~I~~ 310 (397)
-.|..|-|+++++++-+.+-.
T Consensus 159 s~~f~~wGWa~wr~~W~e~~~ 179 (343)
T 1fo8_A 159 TDFFPGLGWLLLAELWAELEP 179 (343)
T ss_dssp ESSCCCSSEEEEHHHHHHHGG
T ss_pred ecCCCchhhhhcHHHHHHHhh
Confidence 224568899999999886543
No 14
>1vf5_H Protein PET N; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.27.1 PDB: 2d2c_H* 2e74_H* 2e75_H* 2e76_H* 2zt9_H*
Probab=23.61 E-value=47 Score=20.81 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=20.5
Q ss_pred CCchhHHHHHHHHHHhhHhhhccc
Q 015962 15 LIPRKWALFLCACSFCAGMSFTNR 38 (397)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~ 38 (397)
-++--|+.++.+|+|-..+.|=||
T Consensus 3 ivsl~WaalmvvftfSlslVVWGR 26 (29)
T 1vf5_H 3 IDVLGWVALLVVFTWSIAMVVWGR 26 (29)
T ss_dssp CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHhheeeeEEEEec
Confidence 356779999999999999988777
No 15
>2bo4_A Mannosylglycerate synthase; catalysis, glycosyltransferase, mannose, transferase, stereoselectivity; HET: FLC; 1.95A {Rhodothermus marinus} SCOP: c.68.1.18 PDB: 2bo6_A 2bo7_A* 2bo8_A* 2xw2_A 2y4j_A 2xw3_A* 2xw4_A* 2xw5_A* 2y4k_A* 2y4l_A* 2y4m_A*
Probab=23.02 E-value=3.3e+02 Score=26.71 Aligned_cols=167 Identities=8% Similarity=-0.021 Sum_probs=83.7
Q ss_pred CEEEEEEeecCCCCCCchH--HHHHHHHh-HcCC-EEEecccc-c--CCchhhHHHHHHHHHHhcCCceEEEEeccce-e
Q 015962 166 GIIIRFVIGHSATSGGILD--KAIDAEEK-MHGD-FLRLEHIE-G--YLELSAKTKTYFATAVSMWDAEFYIKVDDDV-H 237 (397)
Q Consensus 166 ~i~~~FvlG~s~~~~~~l~--~~I~~E~~-~~~D-IL~ldf~D-s--Y~NLt~Ktl~~~~wa~~c~~a~fvlKvDDDv-f 237 (397)
...+++|=+-|.+ ++.+ +.+..+.. .++. ++...... . -.....=...+++||....+.++++-+|-|. .
T Consensus 28 ~~EIIVVDDGStD--~T~eia~~la~~~~~~~g~~vi~~~~~r~~~~n~GkG~Al~~G~~~Al~~a~gd~vv~mDADlq~ 105 (397)
T 2bo4_A 28 RVHEVLCIGYERD--QTYEAVERAAPEISRATGTPVSVRLQERLGTLRPGKGDGMNTALRYFLEETQWERIHFYDADITS 105 (397)
T ss_dssp TCCEEEEEESSCC--HHHHHHHHHHHHHHHHHSCCEEEEECCCCSSSSSSHHHHHHHHHHHHHHHCCCSEEEECCTTCSS
T ss_pred CeEEEEEECcCCc--cHHHHHHHhhhhcccccCCeEEEEecccCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEcCCCCC
Confidence 3567888877763 2222 22222333 3444 33332220 1 1234455777888887334789999999999 4
Q ss_pred eeHHHHHHHHHhcCCCCceEEEEecc---CcccccCCCccccccccccCCCCCCCCCCCCCCceeeCHHHHHHHHHhc--
Q 015962 238 VNLATLGMTLAAHRTKPRVYVGCMKS---GPVLARKGVKYYEPEYWKFGEIGNKYFRHATGQLYALSKDLATYISINQ-- 312 (397)
Q Consensus 238 Vn~~~L~~~L~~~~~~~~lyiG~~~~---~pv~rd~~~Kwyvp~~~~fg~p~~~YP~y~~G~gYvlS~dla~~I~~~~-- 312 (397)
.++..+..++......-++.+|.... +........++.... .+..-.....+...++.++++++++..+....
T Consensus 106 ~~P~~i~~Ll~~l~~g~D~V~g~~~r~~~~~~~~~~~~~~ll~~--~~~~~~~~~i~dp~sG~~a~~R~vl~~l~~~~~~ 183 (397)
T 2bo4_A 106 FGPDWITKAEEAADFGYGLVRHYFPRASTDAMITWMITRTGFAL--LWPHTELSWIEQPLGGELLMRREVAAMLYEDERV 183 (397)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEECCCCTTSCHHHHHTHHHHHHH--HCTTSSGGGCSCTTCCCEEEEHHHHHHHHHCHHH
T ss_pred CCHHHHHHHHHHHHcCCCEEEEEeccccCCcHHHHHHHHHHHHH--HHHHhhccccccCCcccEEEeHHHHHHHhhhccc
Confidence 78877777776543334566675321 111111111110000 00000001222335677899999999885421
Q ss_pred cccCCCCcchHHHHHHH--hcCCCeEe
Q 015962 313 HLLHKYANEDVSLGSWF--IGLDVEHV 337 (397)
Q Consensus 313 ~~l~~~~~EDV~vG~~l--~~L~v~~i 337 (397)
...+.|. .|+.+-..+ .++.|..+
T Consensus 184 ~~~~~fg-~eiel~~~a~~~G~rI~EV 209 (397)
T 2bo4_A 184 RRRSDWG-IDTLYTFVTVQQGVSIYEC 209 (397)
T ss_dssp HTCCSTT-HHHHHHHHHHHTTCCEEEE
T ss_pred CcCCCcc-hHHHHHHHHHHcCCEEEEE
Confidence 1223333 366665544 35555433
No 16
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=22.42 E-value=1e+02 Score=23.44 Aligned_cols=31 Identities=10% Similarity=0.102 Sum_probs=21.1
Q ss_pred HHHHHHHhHHHHhhhHHHhhhccccccCCCC
Q 015962 82 AIQSQDKRLDGLKTKITAVRAERDSVSLSHP 112 (397)
Q Consensus 82 ~~~~~~~~~~~le~el~~~~~~~~~~~~~~~ 112 (397)
.++.|+++|..||..|.........+.+..|
T Consensus 49 ~~~~Le~rl~~le~~l~~~~~~~~~~~~~~p 79 (96)
T 1pyi_A 49 YVFFLEDRLAVMMRVLKEYGVDPTKIRGNIP 79 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCSSCSS
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccccCCCCC
Confidence 5667888899999888877654443444333
No 17
>2z5i_A TM, general control protein GCN4 and tropomyosin alpha-1 chain; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Saccharomyces cerevisiae} PDB: 2z5h_A 1kql_A 1mv4_A 2g9j_C
Probab=21.91 E-value=1.1e+02 Score=21.48 Aligned_cols=22 Identities=18% Similarity=0.299 Sum_probs=18.5
Q ss_pred HHHHHHHHhHHHHhhhHHHhhh
Q 015962 81 QAIQSQDKRLDGLKTKITAVRA 102 (397)
Q Consensus 81 ~~~~~~~~~~~~le~el~~~~~ 102 (397)
.-++.|+|+|+.||.+|...+.
T Consensus 12 RsV~KLek~ID~LEdeL~~eKe 33 (52)
T 2z5i_A 12 NEVARLKKLVDDLEDELYAQKL 33 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHH
Confidence 3677899999999999988774
Done!