Query 015966
Match_columns 397
No_of_seqs 245 out of 888
Neff 5.1
Searched_HMMs 46136
Date Fri Mar 29 02:34:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015966.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015966hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF07942 N2227: N2227-like pro 100.0 9.7E-82 2.1E-86 610.6 23.3 254 142-396 8-264 (270)
2 KOG2798 Putative trehalase [Ca 100.0 4.5E-81 9.8E-86 609.3 19.7 288 102-396 68-358 (369)
3 PRK11207 tellurite resistance 99.7 9.3E-16 2E-20 141.9 14.6 136 189-373 30-168 (197)
4 PF13489 Methyltransf_23: Meth 99.7 7.3E-16 1.6E-20 133.8 11.6 146 174-373 9-161 (161)
5 PRK11036 putative S-adenosyl-L 99.6 4.5E-15 9.7E-20 141.9 16.8 157 189-385 44-219 (255)
6 TIGR00477 tehB tellurite resis 99.6 3.8E-15 8.2E-20 137.7 14.9 137 189-374 30-168 (195)
7 PF05724 TPMT: Thiopurine S-me 99.6 1.5E-15 3.2E-20 144.0 12.2 164 171-374 23-189 (218)
8 TIGR03840 TMPT_Se_Te thiopurin 99.6 8.8E-15 1.9E-19 138.0 16.7 150 189-374 34-186 (213)
9 PRK13256 thiopurine S-methyltr 99.6 6E-15 1.3E-19 140.9 14.9 164 171-372 29-194 (226)
10 COG2226 UbiE Methylase involve 99.6 5.6E-15 1.2E-19 142.0 14.7 154 174-372 39-221 (238)
11 PLN02233 ubiquinone biosynthes 99.6 2.3E-14 5E-19 138.4 18.8 191 142-374 25-247 (261)
12 PRK13255 thiopurine S-methyltr 99.6 1.8E-14 4E-19 136.3 17.1 169 169-377 21-192 (218)
13 PRK10258 biotin biosynthesis p 99.6 3.6E-14 7.7E-19 134.7 17.9 174 145-373 6-185 (251)
14 PRK14103 trans-aconitate 2-met 99.6 2E-14 4.4E-19 137.2 16.2 134 189-372 29-181 (255)
15 PLN02396 hexaprenyldihydroxybe 99.6 4.7E-14 1E-18 141.0 19.2 160 174-374 112-288 (322)
16 PF01209 Ubie_methyltran: ubiE 99.6 2.4E-15 5.2E-20 143.7 9.4 143 189-373 47-218 (233)
17 PF12847 Methyltransf_18: Meth 99.6 8.4E-15 1.8E-19 121.0 10.6 101 189-331 1-108 (112)
18 PLN02244 tocopherol O-methyltr 99.6 5.9E-14 1.3E-18 140.4 16.7 145 189-374 118-277 (340)
19 PRK01683 trans-aconitate 2-met 99.5 1.7E-13 3.7E-18 130.3 16.7 138 189-374 31-186 (258)
20 PF08241 Methyltransf_11: Meth 99.5 2.9E-14 6.2E-19 112.8 9.5 93 194-331 1-94 (95)
21 TIGR02752 MenG_heptapren 2-hep 99.5 4.4E-13 9.5E-18 125.2 18.6 185 145-374 4-217 (231)
22 PRK15068 tRNA mo(5)U34 methylt 99.5 1.6E-13 3.5E-18 136.8 16.5 143 189-374 122-273 (322)
23 PRK12335 tellurite resistance 99.5 1.4E-13 2.9E-18 134.4 15.7 134 190-373 121-257 (287)
24 PF03848 TehB: Tellurite resis 99.5 1.4E-13 3E-18 128.6 13.7 134 189-372 30-166 (192)
25 TIGR00452 methyltransferase, p 99.5 3E-13 6.5E-18 134.8 16.6 143 189-374 121-272 (314)
26 TIGR00740 methyltransferase, p 99.5 1.3E-12 2.8E-17 123.5 16.4 141 189-372 53-224 (239)
27 smart00828 PKS_MT Methyltransf 99.5 6.6E-13 1.4E-17 123.4 14.2 146 192-380 2-149 (224)
28 PRK15451 tRNA cmo(5)U34 methyl 99.5 6.7E-13 1.4E-17 126.8 14.4 140 189-372 56-227 (247)
29 PLN02585 magnesium protoporphy 99.5 1.3E-12 2.8E-17 130.4 16.7 150 189-379 144-303 (315)
30 PTZ00098 phosphoethanolamine N 99.5 9.5E-13 2.1E-17 127.3 15.2 142 189-374 52-201 (263)
31 TIGR02021 BchM-ChlM magnesium 99.5 2.9E-12 6.2E-17 119.5 17.5 159 172-380 43-211 (219)
32 PF02353 CMAS: Mycolic acid cy 99.4 2.7E-12 5.8E-17 125.6 16.0 155 174-376 50-218 (273)
33 PF13847 Methyltransf_31: Meth 99.4 9.5E-13 2E-17 115.9 11.0 103 189-332 3-108 (152)
34 PLN02490 MPBQ/MSBQ methyltrans 99.4 3.3E-12 7.1E-17 128.7 16.0 141 189-376 113-257 (340)
35 PRK00216 ubiE ubiquinone/menaq 99.4 1.2E-11 2.5E-16 114.5 17.3 146 189-375 51-225 (239)
36 PRK05785 hypothetical protein; 99.4 3.3E-12 7.1E-17 121.2 12.5 106 174-334 41-147 (226)
37 TIGR03438 probable methyltrans 99.4 7.6E-12 1.6E-16 123.3 15.4 140 147-331 26-174 (301)
38 COG2227 UbiG 2-polyprenyl-3-me 99.4 1.6E-12 3.4E-17 124.9 9.6 190 139-374 11-214 (243)
39 PLN02336 phosphoethanolamine N 99.4 1.1E-11 2.4E-16 128.3 16.3 141 189-374 266-413 (475)
40 PRK11873 arsM arsenite S-adeno 99.4 6.1E-12 1.3E-16 120.9 13.3 141 189-373 77-228 (272)
41 TIGR01983 UbiG ubiquinone bios 99.4 4.3E-11 9.4E-16 110.9 17.4 146 189-375 45-203 (224)
42 PRK07580 Mg-protoporphyrin IX 99.3 6.4E-11 1.4E-15 110.0 17.8 142 189-375 63-214 (230)
43 TIGR02072 BioC biotin biosynth 99.3 7.9E-12 1.7E-16 115.3 11.6 137 189-372 34-173 (240)
44 PRK05134 bifunctional 3-demeth 99.3 8.1E-11 1.8E-15 110.2 18.2 156 174-374 36-204 (233)
45 TIGR00537 hemK_rel_arch HemK-r 99.3 3.6E-11 7.9E-16 108.9 15.2 125 189-374 19-164 (179)
46 PRK11705 cyclopropane fatty ac 99.3 2.8E-11 6E-16 123.5 15.7 137 189-375 167-312 (383)
47 PRK11088 rrmA 23S rRNA methylt 99.3 1E-11 2.3E-16 120.1 10.8 97 189-339 85-186 (272)
48 PF08242 Methyltransf_12: Meth 99.3 6.7E-13 1.5E-17 108.3 1.9 97 194-330 1-99 (99)
49 TIGR00138 gidB 16S rRNA methyl 99.3 5.7E-11 1.2E-15 109.3 14.5 126 189-378 42-172 (181)
50 PRK08317 hypothetical protein; 99.3 8.3E-11 1.8E-15 108.1 15.5 140 189-373 19-174 (241)
51 COG2230 Cfa Cyclopropane fatty 99.3 5.7E-11 1.2E-15 117.0 14.5 155 174-377 60-225 (283)
52 PRK00517 prmA ribosomal protei 99.3 8.4E-11 1.8E-15 112.7 15.3 128 174-374 109-237 (250)
53 KOG1270 Methyltransferases [Co 99.3 3E-11 6.6E-16 117.4 12.2 189 143-372 34-246 (282)
54 TIGR00406 prmA ribosomal prote 99.3 8.6E-11 1.9E-15 115.2 15.6 132 174-373 149-281 (288)
55 PRK06202 hypothetical protein; 99.3 6E-11 1.3E-15 111.7 13.8 139 189-374 60-221 (232)
56 PRK14968 putative methyltransf 99.3 1.6E-10 3.4E-15 103.6 15.3 129 189-374 23-172 (188)
57 TIGR02081 metW methionine bios 99.3 8.5E-11 1.8E-15 108.0 13.6 145 175-374 4-166 (194)
58 TIGR01934 MenG_MenH_UbiE ubiqu 99.3 2.4E-10 5.3E-15 104.6 16.4 142 189-374 39-209 (223)
59 PF13649 Methyltransf_25: Meth 99.3 1.8E-11 3.9E-16 100.8 7.8 93 193-328 1-101 (101)
60 PLN02336 phosphoethanolamine N 99.2 7.8E-11 1.7E-15 122.0 13.7 141 189-372 37-179 (475)
61 PRK14967 putative methyltransf 99.2 1.7E-10 3.7E-15 108.4 14.5 125 189-373 36-182 (223)
62 PRK00107 gidB 16S rRNA methylt 99.2 2.4E-10 5.3E-15 106.1 15.1 121 189-373 45-167 (187)
63 KOG1271 Methyltransferases [Ge 99.2 5.7E-11 1.2E-15 110.5 10.6 151 159-373 42-203 (227)
64 TIGR02469 CbiT precorrin-6Y C5 99.2 3E-10 6.4E-15 94.6 13.3 100 189-332 19-120 (124)
65 KOG1540 Ubiquinone biosynthesi 99.2 9.1E-11 2E-15 113.9 11.0 145 189-372 100-278 (296)
66 PF13659 Methyltransf_26: Meth 99.2 9.4E-11 2E-15 97.7 9.0 104 190-332 1-113 (117)
67 PRK08287 cobalt-precorrin-6Y C 99.2 8.4E-10 1.8E-14 100.7 15.1 122 189-373 31-154 (187)
68 TIGR03534 RF_mod_PrmC protein- 99.2 8.4E-10 1.8E-14 103.6 15.5 136 174-373 76-239 (251)
69 PRK00121 trmB tRNA (guanine-N( 99.2 1.7E-10 3.7E-15 107.4 10.5 145 189-392 40-195 (202)
70 TIGR01177 conserved hypothetic 99.2 3.2E-10 6.9E-15 112.9 12.7 123 189-373 182-313 (329)
71 PHA03411 putative methyltransf 99.1 5.4E-10 1.2E-14 109.9 13.1 133 189-381 64-220 (279)
72 PRK04266 fibrillarin; Provisio 99.1 3E-09 6.4E-14 101.6 15.9 143 189-382 72-216 (226)
73 PF08003 Methyltransf_9: Prote 99.1 2.5E-09 5.5E-14 106.2 15.6 176 143-373 67-265 (315)
74 PRK00377 cbiT cobalt-precorrin 99.1 2.4E-09 5.2E-14 99.0 14.4 127 189-374 40-169 (198)
75 smart00138 MeTrc Methyltransfe 99.1 7.8E-10 1.7E-14 107.4 11.4 117 189-331 99-239 (264)
76 TIGR02716 C20_methyl_CrtF C-20 99.1 5.2E-09 1.1E-13 102.7 16.9 140 189-372 149-303 (306)
77 TIGR03587 Pse_Me-ase pseudamin 99.1 1.7E-09 3.6E-14 101.4 12.8 92 189-331 43-139 (204)
78 PF05401 NodS: Nodulation prot 99.1 5.8E-10 1.3E-14 104.7 9.5 131 189-372 43-176 (201)
79 PTZ00146 fibrillarin; Provisio 99.1 3.2E-09 6.9E-14 105.2 15.0 168 155-383 106-278 (293)
80 TIGR03533 L3_gln_methyl protei 99.0 1.1E-08 2.3E-13 100.5 16.5 125 189-373 121-272 (284)
81 PRK09328 N5-glutamine S-adenos 99.0 8.5E-09 1.8E-13 98.6 15.1 124 189-373 108-260 (275)
82 TIGR00080 pimt protein-L-isoas 99.0 4.1E-09 8.9E-14 98.6 12.5 109 173-332 64-175 (215)
83 PRK13944 protein-L-isoaspartat 99.0 5.7E-09 1.2E-13 97.3 13.3 111 172-332 58-171 (205)
84 PRK06922 hypothetical protein; 99.0 2.1E-09 4.6E-14 116.0 11.3 104 189-333 418-536 (677)
85 PF05175 MTS: Methyltransferas 99.0 6.8E-09 1.5E-13 94.0 13.0 109 173-331 22-137 (170)
86 COG4123 Predicted O-methyltran 99.0 8.2E-09 1.8E-13 100.1 14.2 132 189-376 44-195 (248)
87 TIGR00091 tRNA (guanine-N(7)-) 99.0 2.2E-09 4.8E-14 99.1 9.6 104 189-332 16-130 (194)
88 cd02440 AdoMet_MTases S-adenos 99.0 6.6E-09 1.4E-13 80.6 10.3 100 192-332 1-102 (107)
89 PRK07402 precorrin-6B methylas 99.0 7E-09 1.5E-13 95.4 12.1 99 189-332 40-140 (196)
90 TIGR03704 PrmC_rel_meth putati 98.9 1.8E-08 3.8E-13 97.3 15.0 131 190-381 87-245 (251)
91 PRK15001 SAM-dependent 23S rib 98.9 8.9E-09 1.9E-13 105.3 13.3 116 176-334 218-340 (378)
92 PRK13942 protein-L-isoaspartat 98.9 1E-08 2.2E-13 96.3 12.4 112 170-332 60-174 (212)
93 PRK14966 unknown domain/N5-glu 98.9 3.6E-08 7.8E-13 102.1 16.9 126 189-374 251-404 (423)
94 PRK09489 rsmC 16S ribosomal RN 98.9 1.4E-08 3E-13 102.5 13.4 101 190-335 197-304 (342)
95 PRK00312 pcm protein-L-isoaspa 98.9 1.8E-08 3.9E-13 93.7 12.8 110 172-332 64-173 (212)
96 PRK11805 N5-glutamine S-adenos 98.9 4.5E-08 9.7E-13 97.3 16.3 122 191-372 135-283 (307)
97 PHA03412 putative methyltransf 98.9 1.1E-08 2.4E-13 98.8 11.5 141 189-381 49-208 (241)
98 PF06325 PrmA: Ribosomal prote 98.9 8.6E-09 1.9E-13 102.3 10.9 133 172-374 149-282 (295)
99 PF07021 MetW: Methionine bios 98.9 5E-08 1.1E-12 91.4 14.9 138 189-377 13-169 (193)
100 COG2264 PrmA Ribosomal protein 98.9 2.8E-08 6.1E-13 98.8 13.8 137 172-374 150-287 (300)
101 PF06080 DUF938: Protein of un 98.8 5.9E-08 1.3E-12 91.8 14.2 166 165-373 7-190 (204)
102 PRK11188 rrmJ 23S rRNA methylt 98.8 1.3E-08 2.8E-13 95.7 9.5 94 189-332 51-163 (209)
103 TIGR00536 hemK_fam HemK family 98.8 5.5E-08 1.2E-12 95.1 13.3 123 191-373 116-267 (284)
104 KOG2361 Predicted methyltransf 98.8 2.5E-08 5.4E-13 96.3 10.6 159 173-373 56-235 (264)
105 PRK01544 bifunctional N5-gluta 98.8 8.1E-08 1.8E-12 101.6 14.7 123 190-372 139-290 (506)
106 COG4106 Tam Trans-aconitate me 98.8 1.2E-08 2.5E-13 97.4 7.1 159 158-371 2-182 (257)
107 TIGR00438 rrmJ cell division p 98.8 3.5E-08 7.6E-13 90.2 9.3 94 189-332 32-144 (188)
108 PRK00811 spermidine synthase; 98.8 5.3E-08 1.2E-12 95.6 11.0 108 189-332 76-189 (283)
109 KOG4300 Predicted methyltransf 98.8 5.7E-08 1.2E-12 92.3 10.6 104 189-332 76-180 (252)
110 PLN02232 ubiquinone biosynthes 98.7 4.8E-08 1E-12 87.8 9.4 95 277-374 27-146 (160)
111 PRK14121 tRNA (guanine-N(7)-)- 98.7 1.2E-07 2.6E-12 97.4 13.3 144 142-331 68-232 (390)
112 PF05148 Methyltransf_8: Hypot 98.7 2.1E-07 4.5E-12 88.5 13.7 144 145-374 41-184 (219)
113 KOG2940 Predicted methyltransf 98.7 3.1E-08 6.7E-13 95.4 7.0 184 151-381 34-235 (325)
114 smart00650 rADc Ribosomal RNA 98.7 1.2E-07 2.7E-12 85.3 10.2 96 189-331 13-110 (169)
115 PRK03612 spermidine synthase; 98.7 3.9E-07 8.4E-12 96.7 15.0 134 189-369 297-438 (521)
116 TIGR00417 speE spermidine synt 98.7 2.2E-07 4.8E-12 90.3 12.2 122 170-332 57-184 (270)
117 PRK01581 speE spermidine synth 98.7 2.7E-07 5.8E-12 94.2 12.9 144 189-380 150-302 (374)
118 KOG1541 Predicted protein carb 98.6 2E-07 4.3E-12 89.4 10.9 121 189-369 50-181 (270)
119 PRK04457 spermidine synthase; 98.6 1.5E-07 3.2E-12 91.5 10.3 103 189-331 66-174 (262)
120 PLN03075 nicotianamine synthas 98.6 3.9E-07 8.4E-12 90.7 12.8 104 189-332 123-231 (296)
121 PLN02781 Probable caffeoyl-CoA 98.6 2.8E-07 6.1E-12 88.1 11.3 111 174-332 59-176 (234)
122 PRK15128 23S rRNA m(5)C1962 me 98.6 3.5E-07 7.5E-12 94.2 12.6 125 189-365 220-355 (396)
123 PRK13943 protein-L-isoaspartat 98.6 4.2E-07 9.1E-12 91.3 12.7 110 172-332 66-178 (322)
124 COG4976 Predicted methyltransf 98.6 6.3E-08 1.4E-12 93.2 5.5 134 189-374 125-264 (287)
125 PF05891 Methyltransf_PK: AdoM 98.5 8.8E-07 1.9E-11 84.5 12.4 139 189-374 55-200 (218)
126 PF05219 DREV: DREV methyltran 98.5 1.6E-06 3.5E-11 84.7 13.4 140 189-382 94-245 (265)
127 PRK11783 rlmL 23S rRNA m(2)G24 98.5 4.4E-07 9.5E-12 99.5 10.4 129 189-373 538-678 (702)
128 PRK10901 16S rRNA methyltransf 98.5 1.1E-06 2.3E-11 91.0 12.1 130 189-372 244-398 (427)
129 PLN02672 methionine S-methyltr 98.4 2.5E-06 5.5E-11 97.1 14.8 142 190-374 119-302 (1082)
130 PRK14904 16S rRNA methyltransf 98.4 1.6E-06 3.4E-11 90.2 11.8 100 189-331 250-374 (445)
131 PLN02366 spermidine synthase 98.4 2.3E-06 5E-11 85.5 12.5 108 189-332 91-204 (308)
132 PF05185 PRMT5: PRMT5 arginine 98.4 1.1E-06 2.5E-11 91.8 10.2 115 174-331 170-294 (448)
133 COG2890 HemK Methylase of poly 98.4 7.6E-06 1.6E-10 80.6 15.1 119 192-372 113-260 (280)
134 PRK04148 hypothetical protein; 98.4 2.7E-06 5.9E-11 75.7 10.8 100 173-326 3-103 (134)
135 COG2521 Predicted archaeal met 98.4 1.8E-06 3.8E-11 83.6 10.3 151 173-372 119-274 (287)
136 PRK13168 rumA 23S rRNA m(5)U19 98.4 5.9E-06 1.3E-10 85.8 14.9 136 189-386 297-436 (443)
137 COG2242 CobL Precorrin-6B meth 98.4 7.3E-06 1.6E-10 76.7 13.3 122 188-372 33-158 (187)
138 PF01596 Methyltransf_3: O-met 98.4 1.9E-06 4E-11 81.5 9.5 111 174-332 36-153 (205)
139 KOG3045 Predicted RNA methylas 98.4 4.7E-06 1E-10 81.7 12.2 141 145-373 149-289 (325)
140 PF01135 PCMT: Protein-L-isoas 98.4 3.7E-06 8E-11 79.7 11.3 138 146-334 18-173 (209)
141 PLN02476 O-methyltransferase 98.3 4.5E-06 9.7E-11 82.5 11.7 117 174-339 109-232 (278)
142 COG2263 Predicted RNA methylas 98.3 2.9E-06 6.4E-11 79.6 9.7 127 189-383 45-180 (198)
143 PRK14903 16S rRNA methyltransf 98.3 3.1E-06 6.6E-11 88.0 10.7 102 189-331 237-363 (431)
144 PRK14902 16S rRNA methyltransf 98.3 5E-06 1.1E-10 86.3 11.8 102 189-331 250-376 (444)
145 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.3 2.6E-06 5.7E-11 83.2 9.1 204 149-374 19-238 (256)
146 KOG3010 Methyltransferase [Gen 98.3 2.5E-06 5.4E-11 82.7 8.5 95 192-331 36-133 (261)
147 PRK03522 rumB 23S rRNA methylu 98.3 5.9E-06 1.3E-10 82.1 11.3 39 190-228 174-212 (315)
148 KOG2899 Predicted methyltransf 98.3 1.3E-05 2.8E-10 78.0 13.2 183 189-382 58-265 (288)
149 PRK10909 rsmD 16S rRNA m(2)G96 98.3 6.9E-06 1.5E-10 77.2 10.8 39 190-228 54-93 (199)
150 PRK14896 ksgA 16S ribosomal RN 98.3 9.9E-06 2.2E-10 78.3 11.9 52 174-228 17-68 (258)
151 TIGR00446 nop2p NOL1/NOP2/sun 98.2 7.7E-06 1.7E-10 79.4 10.7 101 189-331 71-196 (264)
152 PF03291 Pox_MCEL: mRNA cappin 98.2 6.5E-06 1.4E-10 83.1 10.0 155 189-374 62-266 (331)
153 PF01739 CheR: CheR methyltran 98.2 4.4E-06 9.5E-11 78.5 8.0 124 189-331 31-172 (196)
154 PRK00274 ksgA 16S ribosomal RN 98.2 1.1E-05 2.3E-10 78.8 10.9 53 173-228 29-81 (272)
155 KOG1975 mRNA cap methyltransfe 98.2 8.1E-06 1.8E-10 82.1 10.1 137 160-335 84-238 (389)
156 COG2519 GCD14 tRNA(1-methylade 98.2 2.1E-05 4.5E-10 76.7 12.3 117 169-335 77-196 (256)
157 COG2813 RsmC 16S RNA G1207 met 98.2 1.7E-05 3.7E-10 79.0 11.9 117 176-339 148-273 (300)
158 TIGR00479 rumA 23S rRNA (uraci 98.2 1.1E-05 2.3E-10 83.3 10.5 112 173-331 279-393 (431)
159 PLN02589 caffeoyl-CoA O-methyl 98.1 1.8E-05 3.8E-10 77.0 11.1 117 174-339 70-194 (247)
160 PTZ00338 dimethyladenosine tra 98.1 1.8E-05 3.9E-10 78.6 11.2 97 174-317 24-122 (294)
161 PRK14901 16S rRNA methyltransf 98.1 1.2E-05 2.6E-10 83.4 9.6 104 189-331 252-381 (434)
162 TIGR00095 RNA methyltransferas 98.1 2.7E-05 5.9E-10 72.3 11.0 40 189-228 49-89 (189)
163 PRK10611 chemotaxis methyltran 98.1 2.4E-05 5.1E-10 77.7 10.9 121 189-331 115-259 (287)
164 PF03141 Methyltransf_29: Puta 98.1 3.2E-06 6.9E-11 88.9 4.5 147 174-374 101-252 (506)
165 COG1041 Predicted DNA modifica 98.1 2.7E-05 5.9E-10 79.0 10.8 123 170-335 180-311 (347)
166 TIGR02085 meth_trns_rumB 23S r 98.1 3E-05 6.5E-10 79.1 11.3 132 190-387 234-369 (374)
167 PF11968 DUF3321: Putative met 98.1 7E-05 1.5E-09 71.7 13.0 140 170-374 31-180 (219)
168 TIGR00563 rsmB ribosomal RNA s 98.1 2.8E-05 6E-10 80.4 11.2 41 189-229 238-280 (426)
169 PF12147 Methyltransf_20: Puta 98.0 0.00018 3.8E-09 71.8 15.1 210 115-374 67-297 (311)
170 TIGR00478 tly hemolysin TlyA f 98.0 0.00015 3.3E-09 69.7 14.2 38 189-226 75-113 (228)
171 PF02390 Methyltransf_4: Putat 98.0 1.7E-05 3.7E-10 74.2 7.3 101 191-331 19-130 (195)
172 PF01170 UPF0020: Putative RNA 98.0 4.2E-05 9.1E-10 70.4 9.1 103 189-332 28-149 (179)
173 PF08704 GCD14: tRNA methyltra 97.9 5.1E-05 1.1E-09 73.8 9.8 153 157-372 11-168 (247)
174 PF01564 Spermine_synth: Sperm 97.9 5.5E-05 1.2E-09 73.2 9.5 107 189-332 76-189 (246)
175 COG0500 SmtA SAM-dependent met 97.9 0.00016 3.6E-09 56.6 10.2 98 193-332 52-153 (257)
176 COG2518 Pcm Protein-L-isoaspar 97.9 0.00017 3.6E-09 68.7 12.1 110 174-334 60-170 (209)
177 COG4122 Predicted O-methyltran 97.9 0.0001 2.2E-09 70.6 10.7 99 189-331 59-163 (219)
178 PLN02823 spermine synthase 97.9 7.8E-05 1.7E-09 75.5 10.3 109 189-335 103-222 (336)
179 TIGR00755 ksgA dimethyladenosi 97.9 0.00016 3.6E-09 69.4 11.7 52 174-228 17-68 (253)
180 PF00891 Methyltransf_2: O-met 97.8 0.00011 2.3E-09 69.6 10.0 93 189-333 100-198 (241)
181 KOG1499 Protein arginine N-met 97.8 8.7E-05 1.9E-09 75.2 9.0 100 189-331 60-164 (346)
182 COG0421 SpeE Spermidine syntha 97.8 0.00025 5.4E-09 70.3 11.9 105 191-332 78-188 (282)
183 PRK00536 speE spermidine synth 97.8 0.00019 4.1E-09 70.5 10.8 98 189-332 72-169 (262)
184 TIGR03439 methyl_EasF probable 97.8 0.00073 1.6E-08 68.1 15.2 117 172-331 64-194 (319)
185 PF02384 N6_Mtase: N-6 DNA Met 97.8 0.00016 3.5E-09 71.0 10.2 122 173-335 33-184 (311)
186 PRK11727 23S rRNA mA1618 methy 97.7 0.00058 1.3E-08 68.9 12.8 43 189-231 114-158 (321)
187 COG1352 CheR Methylase of chem 97.6 0.0004 8.7E-09 68.5 10.9 125 189-331 96-238 (268)
188 PRK11783 rlmL 23S rRNA m(2)G24 97.6 0.00035 7.5E-09 77.0 11.1 104 189-331 190-344 (702)
189 KOG1661 Protein-L-isoaspartate 97.5 0.00035 7.6E-09 66.9 8.4 123 170-335 68-195 (237)
190 TIGR02987 met_A_Alw26 type II 97.5 0.00065 1.4E-08 72.0 11.3 43 189-231 31-83 (524)
191 COG3963 Phospholipid N-methylt 97.5 0.00089 1.9E-08 62.3 10.0 104 188-336 47-160 (194)
192 PRK00050 16S rRNA m(4)C1402 me 97.4 0.0014 3.1E-08 65.4 11.7 52 174-228 7-61 (296)
193 COG0030 KsgA Dimethyladenosine 97.4 0.0012 2.6E-08 64.8 10.8 79 189-310 30-110 (259)
194 KOG1269 SAM-dependent methyltr 97.4 0.00038 8.2E-09 71.4 7.6 147 189-376 110-269 (364)
195 COG0220 Predicted S-adenosylme 97.4 0.0011 2.3E-08 63.9 9.7 102 190-331 49-161 (227)
196 PF02475 Met_10: Met-10+ like- 97.3 0.00098 2.1E-08 63.0 8.6 113 159-330 84-198 (200)
197 PF08123 DOT1: Histone methyla 97.3 0.001 2.2E-08 63.0 8.4 117 189-336 42-160 (205)
198 PRK04338 N(2),N(2)-dimethylgua 97.3 0.0013 2.9E-08 67.6 10.0 96 190-331 58-155 (382)
199 PF10294 Methyltransf_16: Puta 97.3 0.00087 1.9E-08 61.3 7.6 104 189-331 45-153 (173)
200 PF01728 FtsJ: FtsJ-like methy 97.2 0.00077 1.7E-08 61.1 6.8 49 173-222 8-59 (181)
201 KOG3178 Hydroxyindole-O-methyl 97.1 0.0061 1.3E-07 62.0 12.7 133 191-373 179-328 (342)
202 KOG2352 Predicted spermine/spe 97.1 0.0043 9.3E-08 65.5 11.9 99 191-332 50-159 (482)
203 PF09243 Rsm22: Mitochondrial 97.0 0.008 1.7E-07 59.0 12.2 58 173-233 20-80 (274)
204 PF09445 Methyltransf_15: RNA 97.0 0.00098 2.1E-08 61.3 5.0 37 192-228 2-38 (163)
205 PF03602 Cons_hypoth95: Conser 97.0 0.0031 6.6E-08 58.6 8.4 101 189-331 42-150 (183)
206 KOG1500 Protein arginine N-met 97.0 0.0048 1E-07 63.0 9.9 99 189-331 177-279 (517)
207 PRK01544 bifunctional N5-gluta 96.9 0.0034 7.3E-08 66.9 9.1 102 189-331 347-459 (506)
208 COG1092 Predicted SAM-dependen 96.9 0.0047 1E-07 64.0 9.3 136 189-372 217-363 (393)
209 TIGR00308 TRM1 tRNA(guanine-26 96.8 0.0036 7.8E-08 64.4 7.7 97 190-331 45-144 (374)
210 KOG0820 Ribosomal RNA adenine 96.7 0.0071 1.5E-07 60.1 8.7 49 174-225 46-94 (315)
211 PF10672 Methyltrans_SAM: S-ad 96.7 0.012 2.7E-07 58.6 10.2 133 189-373 123-264 (286)
212 PRK11760 putative 23S rRNA C24 96.6 0.015 3.3E-07 59.5 10.7 86 189-327 211-296 (357)
213 COG1064 AdhP Zn-dependent alco 96.5 0.007 1.5E-07 61.6 7.4 93 188-334 165-259 (339)
214 TIGR02143 trmA_only tRNA (urac 96.5 0.0066 1.4E-07 61.7 7.1 38 191-228 199-236 (353)
215 PF13679 Methyltransf_32: Meth 96.4 0.0087 1.9E-07 52.7 6.5 41 189-229 25-71 (141)
216 PRK11933 yebU rRNA (cytosine-C 96.4 0.023 5E-07 60.2 10.6 41 189-229 113-156 (470)
217 COG2265 TrmA SAM-dependent met 96.3 0.012 2.6E-07 61.8 8.1 125 189-374 293-419 (432)
218 PRK05031 tRNA (uracil-5-)-meth 96.3 0.01 2.2E-07 60.5 7.3 38 191-228 208-245 (362)
219 PRK10742 putative methyltransf 96.2 0.013 2.8E-07 57.5 7.3 41 191-231 90-130 (250)
220 KOG3420 Predicted RNA methylas 96.1 0.0091 2E-07 54.7 5.1 52 174-228 36-88 (185)
221 COG2520 Predicted methyltransf 96.1 0.079 1.7E-06 54.2 12.4 147 159-373 171-318 (341)
222 KOG1663 O-methyltransferase [S 96.0 0.095 2.1E-06 51.0 11.8 129 151-331 45-180 (237)
223 KOG2904 Predicted methyltransf 95.9 0.087 1.9E-06 52.7 11.1 61 164-228 127-189 (328)
224 KOG3987 Uncharacterized conser 95.8 0.0025 5.5E-08 61.3 0.3 139 189-381 112-264 (288)
225 PF01269 Fibrillarin: Fibrilla 95.7 0.088 1.9E-06 51.0 10.0 64 153-224 45-111 (229)
226 PF03059 NAS: Nicotianamine sy 95.6 0.11 2.4E-06 51.6 11.0 103 189-331 120-227 (276)
227 PF04445 SAM_MT: Putative SAM- 95.6 0.024 5.1E-07 55.1 6.1 81 191-303 77-157 (234)
228 PF00398 RrnaAD: Ribosomal RNA 95.5 0.048 1E-06 52.9 7.9 37 189-225 30-66 (262)
229 COG4076 Predicted RNA methylas 95.4 0.068 1.5E-06 51.0 8.0 114 163-331 16-132 (252)
230 COG0742 N6-adenine-specific me 95.3 0.11 2.4E-06 48.9 9.1 40 189-228 43-83 (187)
231 KOG3191 Predicted N6-DNA-methy 95.1 0.28 6.2E-06 46.5 11.0 139 174-372 28-190 (209)
232 PF07757 AdoMet_MTase: Predict 95.1 0.065 1.4E-06 46.6 6.3 73 146-219 12-88 (112)
233 PF02527 GidB: rRNA small subu 95.1 0.13 2.8E-06 48.1 8.8 119 192-372 51-172 (184)
234 PF05958 tRNA_U5-meth_tr: tRNA 94.7 0.074 1.6E-06 54.1 6.7 52 173-228 184-235 (352)
235 PF04816 DUF633: Family of unk 94.6 1 2.2E-05 42.8 13.6 122 193-375 1-124 (205)
236 PF06859 Bin3: Bicoid-interact 94.2 0.017 3.6E-07 50.1 0.7 77 297-374 1-91 (110)
237 COG0293 FtsJ 23S rRNA methylas 94.2 0.23 4.9E-06 47.5 8.3 130 176-374 34-182 (205)
238 COG0116 Predicted N6-adenine-s 94.1 0.45 9.8E-06 49.4 10.9 106 189-335 191-345 (381)
239 KOG2730 Methylase [General fun 94.0 0.06 1.3E-06 52.3 4.1 40 189-228 94-133 (263)
240 PRK13699 putative methylase; P 94.0 0.2 4.3E-06 48.1 7.6 77 279-373 3-94 (227)
241 COG0357 GidB Predicted S-adeno 93.9 0.76 1.7E-05 44.2 11.4 141 190-391 68-211 (215)
242 TIGR01444 fkbM_fam methyltrans 93.8 0.099 2.2E-06 44.9 4.8 37 192-228 1-39 (143)
243 PRK09424 pntA NAD(P) transhydr 93.8 0.33 7.1E-06 52.2 9.5 117 188-334 163-285 (509)
244 KOG0822 Protein kinase inhibit 93.7 0.18 3.8E-06 54.4 7.1 116 173-331 351-475 (649)
245 COG1189 Predicted rRNA methyla 93.6 1.4 3E-05 43.3 12.6 150 173-373 66-222 (245)
246 COG0144 Sun tRNA and rRNA cyto 93.4 1.1 2.3E-05 46.0 12.1 41 188-228 155-199 (355)
247 KOG2915 tRNA(1-methyladenosine 93.3 0.41 8.8E-06 48.0 8.5 132 158-336 77-212 (314)
248 COG4262 Predicted spermidine s 93.1 0.66 1.4E-05 48.3 9.9 110 188-332 288-405 (508)
249 cd08283 FDH_like_1 Glutathione 93.0 0.45 9.7E-06 48.1 8.7 40 189-228 184-226 (386)
250 cd08254 hydroxyacyl_CoA_DH 6-h 93.0 0.65 1.4E-05 44.8 9.4 39 189-227 165-205 (338)
251 PRK09880 L-idonate 5-dehydroge 92.8 0.36 7.9E-06 47.7 7.6 40 189-228 169-211 (343)
252 cd08232 idonate-5-DH L-idonate 92.6 0.58 1.3E-05 45.6 8.6 38 189-226 165-205 (339)
253 PF13578 Methyltransf_24: Meth 92.5 0.052 1.1E-06 44.7 1.0 50 277-331 50-102 (106)
254 cd00401 AdoHcyase S-adenosyl-L 92.4 0.82 1.8E-05 48.0 9.8 39 189-227 201-241 (413)
255 cd00315 Cyt_C5_DNA_methylase C 92.1 2.9 6.3E-05 41.0 12.8 37 192-228 2-39 (275)
256 PRK01747 mnmC bifunctional tRN 91.5 0.83 1.8E-05 50.0 9.1 71 277-373 148-225 (662)
257 COG4798 Predicted methyltransf 91.5 0.35 7.6E-06 46.4 5.4 75 297-377 130-207 (238)
258 PF05430 Methyltransf_30: S-ad 91.5 0.17 3.7E-06 44.5 3.1 74 278-374 33-110 (124)
259 TIGR00006 S-adenosyl-methyltra 91.3 3.7 8E-05 41.5 12.7 55 174-231 8-64 (305)
260 cd05188 MDR Medium chain reduc 91.1 1.1 2.4E-05 41.2 8.3 38 189-226 134-173 (271)
261 KOG4058 Uncharacterized conser 90.8 0.24 5.2E-06 45.7 3.4 41 189-229 72-113 (199)
262 KOG1709 Guanidinoacetate methy 90.6 2.6 5.7E-05 41.2 10.3 115 173-332 89-204 (271)
263 KOG2671 Putative RNA methylase 90.4 0.54 1.2E-05 48.5 5.9 53 171-225 192-244 (421)
264 TIGR02822 adh_fam_2 zinc-bindi 89.8 2.1 4.4E-05 42.5 9.4 39 189-227 165-205 (329)
265 PRK07417 arogenate dehydrogena 89.6 1.3 2.8E-05 43.2 7.7 34 192-225 2-37 (279)
266 TIGR00518 alaDH alanine dehydr 89.4 0.7 1.5E-05 47.4 5.9 36 189-224 166-203 (370)
267 PF00145 DNA_methylase: C-5 cy 88.8 2.5 5.5E-05 40.7 9.1 37 192-228 2-39 (335)
268 PLN03154 putative allyl alcoho 88.8 1.3 2.7E-05 44.4 7.1 37 189-225 158-197 (348)
269 KOG1331 Predicted methyltransf 88.8 0.73 1.6E-05 46.2 5.3 120 156-331 17-140 (293)
270 cd08230 glucose_DH Glucose deh 88.8 1.8 3.9E-05 42.9 8.2 31 189-219 172-204 (355)
271 PF01555 N6_N4_Mtase: DNA meth 88.7 1.2 2.6E-05 40.4 6.4 52 173-228 179-230 (231)
272 TIGR03451 mycoS_dep_FDH mycoth 88.6 1.2 2.6E-05 44.4 6.8 40 188-227 175-217 (358)
273 cd08285 NADP_ADH NADP(H)-depen 88.4 1.2 2.6E-05 43.9 6.6 41 188-228 165-208 (351)
274 cd05278 FDH_like Formaldehyde 88.2 1.8 3.8E-05 42.2 7.6 38 189-226 167-207 (347)
275 cd08261 Zn_ADH7 Alcohol dehydr 87.7 2.2 4.8E-05 41.6 7.9 37 189-225 159-197 (337)
276 cd08237 ribitol-5-phosphate_DH 87.6 2.1 4.6E-05 42.5 7.9 39 189-227 163-205 (341)
277 cd08245 CAD Cinnamyl alcohol d 87.5 3.4 7.4E-05 40.0 9.1 37 189-225 162-200 (330)
278 KOG3201 Uncharacterized conser 87.5 1 2.3E-05 42.2 5.1 62 295-373 101-164 (201)
279 cd08294 leukotriene_B4_DH_like 87.4 1.7 3.8E-05 41.8 6.9 37 189-225 143-182 (329)
280 PF02826 2-Hacid_dh_C: D-isome 87.3 1.4 3E-05 40.2 5.9 34 189-224 35-72 (178)
281 cd08295 double_bond_reductase_ 87.3 1.8 4E-05 42.4 7.1 38 188-225 150-190 (338)
282 PRK11524 putative methyltransf 86.9 0.77 1.7E-05 45.1 4.2 54 278-332 9-78 (284)
283 PLN02494 adenosylhomocysteinas 86.7 2 4.3E-05 46.0 7.3 35 189-223 253-289 (477)
284 COG0604 Qor NADPH:quinone redu 86.5 3.5 7.7E-05 41.5 8.8 99 189-336 142-243 (326)
285 TIGR00936 ahcY adenosylhomocys 85.9 3.2 6.9E-05 43.5 8.3 36 189-224 194-231 (406)
286 cd08293 PTGR2 Prostaglandin re 85.9 2.2 4.7E-05 41.7 6.8 35 191-225 156-194 (345)
287 cd08286 FDH_like_ADH2 formalde 85.7 2.6 5.7E-05 41.2 7.3 34 296-335 234-267 (345)
288 PTZ00357 methyltransferase; Pr 85.6 4.9 0.00011 45.2 9.7 105 191-326 702-823 (1072)
289 COG0270 Dcm Site-specific DNA 85.6 6.3 0.00014 39.7 10.0 40 189-228 2-42 (328)
290 PRK12480 D-lactate dehydrogena 85.5 3.7 8.1E-05 41.5 8.4 33 189-221 145-179 (330)
291 PF00107 ADH_zinc_N: Zinc-bind 85.5 0.61 1.3E-05 39.2 2.4 89 199-335 1-90 (130)
292 PTZ00075 Adenosylhomocysteinas 85.5 3.8 8.2E-05 43.9 8.7 35 189-223 253-289 (476)
293 cd08255 2-desacetyl-2-hydroxye 85.4 5.5 0.00012 37.5 9.1 39 188-226 96-137 (277)
294 PF07091 FmrO: Ribosomal RNA m 85.4 2.4 5.3E-05 41.8 6.7 82 143-231 66-149 (251)
295 TIGR01202 bchC 2-desacetyl-2-h 85.3 3 6.5E-05 40.8 7.4 37 189-225 144-183 (308)
296 PF03446 NAD_binding_2: NAD bi 85.3 4.7 0.0001 36.1 8.1 59 298-373 58-118 (163)
297 cd08234 threonine_DH_like L-th 84.9 2.9 6.3E-05 40.4 7.1 37 189-225 159-198 (334)
298 COG5459 Predicted rRNA methyla 84.4 3.4 7.3E-05 43.1 7.4 22 312-333 203-224 (484)
299 PRK11559 garR tartronate semia 84.4 9.5 0.00021 37.2 10.4 34 191-224 3-38 (296)
300 TIGR02825 B4_12hDH leukotriene 84.0 3.6 7.8E-05 40.1 7.3 38 188-225 137-177 (325)
301 cd08281 liver_ADH_like1 Zinc-d 83.5 4.6 0.0001 40.5 8.0 40 189-228 191-233 (371)
302 COG1889 NOP1 Fibrillarin-like 83.4 3.6 7.7E-05 39.9 6.7 166 155-383 50-221 (231)
303 TIGR00872 gnd_rel 6-phosphoglu 83.0 17 0.00037 35.8 11.7 34 192-225 2-37 (298)
304 TIGR00692 tdh L-threonine 3-de 82.7 5.5 0.00012 39.1 8.1 37 189-225 161-200 (340)
305 KOG1562 Spermidine synthase [A 82.7 4 8.6E-05 41.5 7.0 113 189-338 121-240 (337)
306 cd08236 sugar_DH NAD(P)-depend 82.7 5.1 0.00011 39.1 7.8 37 189-225 159-198 (343)
307 TIGR00561 pntA NAD(P) transhyd 82.4 4.2 9.2E-05 43.9 7.6 117 189-333 163-283 (511)
308 PRK05476 S-adenosyl-L-homocyst 82.2 6.6 0.00014 41.5 8.8 36 189-224 211-248 (425)
309 PRK13699 putative methylase; P 82.1 4.6 9.9E-05 38.8 7.1 51 174-228 152-202 (227)
310 PRK11064 wecC UDP-N-acetyl-D-m 82.0 9.5 0.00021 39.7 9.9 35 191-225 4-40 (415)
311 KOG1501 Arginine N-methyltrans 82.0 2.4 5.3E-05 45.2 5.4 45 189-233 66-111 (636)
312 PF01861 DUF43: Protein of unk 82.0 33 0.00072 33.8 12.9 126 189-373 44-176 (243)
313 cd05285 sorbitol_DH Sorbitol d 82.0 8.4 0.00018 37.8 9.1 38 188-225 161-201 (343)
314 KOG2872 Uroporphyrinogen decar 81.9 4.3 9.4E-05 41.1 6.9 76 152-228 209-289 (359)
315 TIGR03366 HpnZ_proposed putati 81.4 3.7 8E-05 39.5 6.2 40 189-228 120-162 (280)
316 PRK11524 putative methyltransf 80.9 8.4 0.00018 37.9 8.6 54 174-231 197-250 (284)
317 cd08239 THR_DH_like L-threonin 80.4 6.5 0.00014 38.4 7.7 38 189-226 163-203 (339)
318 cd08233 butanediol_DH_like (2R 80.4 5.1 0.00011 39.4 6.9 39 189-227 172-213 (351)
319 KOG2187 tRNA uracil-5-methyltr 80.3 1.7 3.6E-05 46.9 3.6 39 190-228 384-422 (534)
320 PF03269 DUF268: Caenorhabditi 79.7 2 4.2E-05 40.2 3.4 37 295-332 61-109 (177)
321 PF03141 Methyltransf_29: Puta 79.4 6.4 0.00014 42.4 7.6 71 284-374 416-490 (506)
322 cd01080 NAD_bind_m-THF_DH_Cycl 79.1 3.9 8.4E-05 37.7 5.2 45 174-221 31-78 (168)
323 cd08263 Zn_ADH10 Alcohol dehyd 79.0 5.4 0.00012 39.7 6.7 37 189-225 187-226 (367)
324 PRK10458 DNA cytosine methylas 78.9 69 0.0015 34.3 15.2 40 189-228 87-127 (467)
325 PTZ00354 alcohol dehydrogenase 78.5 8.2 0.00018 37.0 7.6 38 189-226 140-180 (334)
326 PLN02712 arogenate dehydrogena 77.8 10 0.00022 42.3 8.9 34 189-222 51-86 (667)
327 PF01189 Nol1_Nop2_Fmu: NOL1/N 77.7 10 0.00022 37.5 8.1 40 189-228 85-127 (283)
328 cd08279 Zn_ADH_class_III Class 77.7 9.9 0.00021 37.8 8.1 37 189-225 182-221 (363)
329 cd08235 iditol_2_DH_like L-idi 77.5 9.1 0.0002 37.3 7.6 37 189-225 165-204 (343)
330 cd05283 CAD1 Cinnamyl alcohol 77.2 10 0.00022 37.1 8.0 38 189-226 169-208 (337)
331 PF04672 Methyltransf_19: S-ad 77.1 5.5 0.00012 39.7 5.9 137 191-372 70-233 (267)
332 COG1233 Phytoene dehydrogenase 77.0 2.7 5.9E-05 44.5 4.1 29 190-218 3-33 (487)
333 cd08278 benzyl_alcohol_DH Benz 76.8 13 0.00027 37.3 8.6 40 189-228 186-228 (365)
334 PRK15469 ghrA bifunctional gly 76.4 5.1 0.00011 40.3 5.6 33 189-221 135-169 (312)
335 PF01795 Methyltransf_5: MraW 76.1 11 0.00024 38.2 8.0 40 189-228 20-61 (310)
336 cd08274 MDR9 Medium chain dehy 76.0 16 0.00035 35.6 8.9 33 189-221 177-212 (350)
337 PRK15057 UDP-glucose 6-dehydro 76.0 12 0.00027 38.7 8.5 34 192-226 2-37 (388)
338 PRK10083 putative oxidoreducta 75.9 15 0.00033 35.7 8.7 39 189-227 160-202 (339)
339 cd08242 MDR_like Medium chain 75.7 14 0.00031 35.6 8.4 40 189-228 155-196 (319)
340 PRK07502 cyclohexadienyl dehyd 75.3 13 0.00027 36.7 8.0 36 190-225 6-45 (307)
341 KOG3115 Methyltransferase-like 75.3 1.9 4.1E-05 41.8 2.1 41 189-232 60-102 (249)
342 PRK10309 galactitol-1-phosphat 75.2 9 0.00019 37.7 7.0 39 189-227 160-201 (347)
343 KOG2651 rRNA adenine N-6-methy 75.1 9.8 0.00021 40.1 7.3 43 189-231 153-196 (476)
344 cd08243 quinone_oxidoreductase 75.1 10 0.00022 35.9 7.1 36 189-224 142-180 (320)
345 PRK06436 glycerate dehydrogena 74.9 6 0.00013 39.7 5.7 32 189-220 121-154 (303)
346 TIGR01505 tartro_sem_red 2-hyd 74.7 22 0.00048 34.6 9.5 33 192-224 1-35 (291)
347 COG3897 Predicted methyltransf 74.3 15 0.00032 35.6 7.7 39 189-227 79-118 (218)
348 PRK11199 tyrA bifunctional cho 73.5 20 0.00044 36.8 9.3 78 142-221 44-132 (374)
349 PF02005 TRM: N2,N2-dimethylgu 73.5 8.3 0.00018 40.0 6.4 100 189-331 49-151 (377)
350 PRK09599 6-phosphogluconate de 73.5 51 0.0011 32.5 11.8 33 192-224 2-36 (301)
351 KOG1201 Hydroxysteroid 17-beta 73.2 6.5 0.00014 39.8 5.4 52 174-225 21-76 (300)
352 PLN02586 probable cinnamyl alc 73.1 15 0.00032 36.9 8.0 35 189-223 183-219 (360)
353 PF02086 MethyltransfD12: D12 72.9 5.9 0.00013 37.4 4.9 55 174-231 8-62 (260)
354 KOG2920 Predicted methyltransf 72.9 3.9 8.4E-05 41.0 3.7 55 170-224 97-152 (282)
355 PF01494 FAD_binding_3: FAD bi 72.6 3.4 7.3E-05 39.6 3.2 29 192-220 3-33 (356)
356 cd08231 MDR_TM0436_like Hypoth 72.3 16 0.00035 36.0 8.0 37 189-225 177-216 (361)
357 PRK08507 prephenate dehydrogen 72.3 21 0.00046 34.6 8.7 33 192-224 2-38 (275)
358 cd08260 Zn_ADH6 Alcohol dehydr 72.2 14 0.00031 36.1 7.5 37 189-225 165-203 (345)
359 cd08270 MDR4 Medium chain dehy 72.2 21 0.00046 33.8 8.5 37 189-225 132-171 (305)
360 TIGR00027 mthyl_TIGR00027 meth 71.9 1E+02 0.0022 30.1 13.7 68 305-373 169-248 (260)
361 TIGR02733 desat_CrtD C-3',4' d 71.8 3.6 7.9E-05 43.0 3.4 30 191-220 2-33 (492)
362 PRK08339 short chain dehydroge 71.6 65 0.0014 30.6 11.7 36 189-224 7-45 (263)
363 PRK13243 glyoxylate reductase; 71.5 11 0.00024 38.1 6.7 33 189-221 149-183 (333)
364 cd08267 MDR1 Medium chain dehy 71.1 23 0.0005 33.5 8.5 32 189-220 143-177 (319)
365 cd08289 MDR_yhfp_like Yhfp put 71.0 15 0.00033 35.3 7.3 36 190-225 147-185 (326)
366 cd05286 QOR2 Quinone oxidoredu 71.0 13 0.00028 34.8 6.7 37 189-225 136-175 (320)
367 PRK12490 6-phosphogluconate de 71.0 56 0.0012 32.2 11.4 34 192-225 2-37 (299)
368 cd08266 Zn_ADH_like1 Alcohol d 70.9 15 0.00033 34.9 7.3 36 189-224 166-204 (342)
369 PLN03209 translocon at the inn 70.4 17 0.00037 40.0 8.2 36 189-224 79-117 (576)
370 PRK05396 tdh L-threonine 3-deh 70.3 21 0.00045 34.9 8.2 37 189-225 163-202 (341)
371 PRK12939 short chain dehydroge 70.2 20 0.00044 32.9 7.7 36 189-224 6-44 (250)
372 TIGR01470 cysG_Nterm siroheme 70.1 23 0.00049 33.5 8.1 31 189-219 8-40 (205)
373 PRK08229 2-dehydropantoate 2-r 70.0 33 0.00072 34.0 9.6 31 191-221 3-35 (341)
374 PRK12475 thiamine/molybdopteri 70.0 5.3 0.00011 40.7 4.0 33 189-221 23-58 (338)
375 cd05289 MDR_like_2 alcohol deh 69.7 26 0.00056 32.7 8.4 33 189-221 144-179 (309)
376 TIGR00675 dcm DNA-methyltransf 69.7 49 0.0011 33.1 10.8 36 193-228 1-37 (315)
377 PRK07233 hypothetical protein; 69.4 3.9 8.5E-05 41.1 3.0 29 192-220 1-31 (434)
378 PLN02256 arogenate dehydrogena 69.4 29 0.00062 34.8 9.1 33 189-221 35-69 (304)
379 PRK15461 NADH-dependent gamma- 69.3 20 0.00043 35.4 7.9 33 192-224 3-37 (296)
380 PRK07574 formate dehydrogenase 69.3 12 0.00025 39.0 6.4 33 189-221 191-225 (385)
381 PRK08655 prephenate dehydrogen 69.3 18 0.00039 38.0 7.9 33 192-224 2-37 (437)
382 COG1063 Tdh Threonine dehydrog 69.0 26 0.00057 35.4 8.8 41 189-229 168-211 (350)
383 cd05281 TDH Threonine dehydrog 68.6 21 0.00045 35.0 7.8 35 189-223 163-200 (341)
384 COG4627 Uncharacterized protei 68.5 2.8 6E-05 39.1 1.5 78 293-370 43-133 (185)
385 cd08265 Zn_ADH3 Alcohol dehydr 68.1 14 0.00031 37.2 6.7 35 296-335 274-308 (384)
386 TIGR02356 adenyl_thiF thiazole 68.1 5.8 0.00013 37.1 3.6 33 189-221 20-55 (202)
387 cd08241 QOR1 Quinone oxidoredu 67.8 45 0.00098 31.2 9.7 37 189-225 139-178 (323)
388 PRK06249 2-dehydropantoate 2-r 67.5 30 0.00064 34.3 8.7 33 189-221 4-38 (313)
389 PF06962 rRNA_methylase: Putat 67.4 31 0.00068 31.2 8.0 115 213-375 1-125 (140)
390 PF11312 DUF3115: Protein of u 67.3 18 0.0004 36.9 7.1 145 167-332 54-240 (315)
391 cd08269 Zn_ADH9 Alcohol dehydr 67.1 22 0.00048 33.7 7.5 35 296-336 197-231 (312)
392 PRK07688 thiamine/molybdopteri 67.0 6.7 0.00015 39.9 4.1 33 189-221 23-58 (339)
393 KOG2539 Mitochondrial/chloropl 66.6 15 0.00032 39.5 6.5 62 170-231 181-246 (491)
394 COG0287 TyrA Prephenate dehydr 66.3 23 0.00049 35.3 7.5 38 190-227 3-44 (279)
395 PF04989 CmcI: Cephalosporin h 66.2 74 0.0016 30.6 10.7 163 170-388 23-203 (206)
396 PLN02985 squalene monooxygenas 66.1 6.5 0.00014 42.1 3.9 68 149-220 6-75 (514)
397 PLN02827 Alcohol dehydrogenase 65.7 22 0.00047 36.0 7.5 39 189-227 193-234 (378)
398 PRK06567 putative bifunctional 65.1 7.1 0.00015 45.4 4.2 32 188-219 381-414 (1028)
399 COG2384 Predicted SAM-dependen 64.3 1.5E+02 0.0032 29.1 13.6 124 190-374 17-142 (226)
400 PRK13771 putative alcohol dehy 64.2 29 0.00064 33.5 7.8 38 189-226 162-202 (334)
401 TIGR01316 gltA glutamate synth 63.5 8.9 0.00019 40.0 4.3 32 189-220 132-165 (449)
402 PRK06475 salicylate hydroxylas 63.4 6.6 0.00014 39.8 3.3 30 191-220 3-34 (400)
403 KOG1596 Fibrillarin and relate 63.4 25 0.00055 35.1 7.0 34 188-221 155-191 (317)
404 PRK07236 hypothetical protein; 63.3 7.2 0.00016 39.3 3.5 33 189-221 5-39 (386)
405 TIGR02824 quinone_pig3 putativ 63.0 58 0.0013 30.6 9.4 37 189-225 139-178 (325)
406 TIGR02734 crtI_fam phytoene de 62.9 5.2 0.00011 41.9 2.5 28 193-220 1-30 (502)
407 PLN03139 formate dehydrogenase 62.9 28 0.00061 36.3 7.8 31 189-221 198-232 (386)
408 cd08296 CAD_like Cinnamyl alco 62.8 28 0.00061 34.0 7.5 39 189-227 163-203 (333)
409 COG1748 LYS9 Saccharopine dehy 62.6 14 0.00031 38.6 5.5 35 191-225 2-39 (389)
410 PRK10754 quinone oxidoreductas 62.6 26 0.00057 33.8 7.1 37 189-225 140-179 (327)
411 PF08729 HUN: HPC2 and ubinucl 62.5 7.2 0.00016 29.6 2.5 31 306-337 24-54 (55)
412 cd08297 CAD3 Cinnamyl alcohol 62.4 31 0.00067 33.6 7.6 36 189-224 165-203 (341)
413 COG0286 HsdM Type I restrictio 62.4 15 0.00033 39.2 5.9 80 146-228 144-231 (489)
414 COG3349 Uncharacterized conser 62.2 7.1 0.00015 42.0 3.3 28 191-218 1-30 (485)
415 PRK08324 short chain dehydroge 62.1 39 0.00085 37.3 9.1 37 189-225 421-460 (681)
416 cd08250 Mgc45594_like Mgc45594 61.3 27 0.00059 33.6 7.0 37 189-225 139-178 (329)
417 PRK12409 D-amino acid dehydrog 61.2 7.6 0.00017 39.3 3.3 28 192-219 3-32 (410)
418 cd08292 ETR_like_2 2-enoyl thi 61.2 21 0.00045 34.2 6.1 36 189-224 139-177 (324)
419 TIGR01988 Ubi-OHases Ubiquinon 61.0 7 0.00015 38.6 2.9 29 193-221 2-32 (385)
420 KOG0024 Sorbitol dehydrogenase 61.0 23 0.0005 36.5 6.5 42 188-229 168-212 (354)
421 PRK08163 salicylate hydroxylas 60.8 8.7 0.00019 38.5 3.5 32 190-221 4-37 (396)
422 PLN02688 pyrroline-5-carboxyla 60.6 66 0.0014 30.7 9.4 33 297-332 61-93 (266)
423 PF01266 DAO: FAD dependent ox 60.4 8.1 0.00018 37.1 3.1 29 193-221 2-32 (358)
424 PF01210 NAD_Gly3P_dh_N: NAD-d 60.3 38 0.00082 30.2 7.2 100 192-333 1-102 (157)
425 cd05282 ETR_like 2-enoyl thioe 60.3 26 0.00056 33.5 6.6 36 189-224 138-176 (323)
426 TIGR02032 GG-red-SF geranylger 60.2 8.6 0.00019 36.1 3.2 30 192-221 2-33 (295)
427 PRK07364 2-octaprenyl-6-methox 60.1 8.5 0.00018 38.8 3.3 33 189-221 17-51 (415)
428 PRK08306 dipicolinate synthase 59.9 42 0.00091 33.4 8.1 36 189-224 151-188 (296)
429 PHA01634 hypothetical protein 59.7 15 0.00032 33.5 4.3 40 189-228 28-68 (156)
430 PLN02927 antheraxanthin epoxid 59.2 8.6 0.00019 42.9 3.4 33 188-220 79-113 (668)
431 PRK09072 short chain dehydroge 59.1 1.3E+02 0.0029 28.0 11.1 36 189-224 4-42 (263)
432 cd05288 PGDH Prostaglandin deh 58.9 32 0.00068 33.1 6.9 37 189-225 145-184 (329)
433 PLN02989 cinnamyl-alcohol dehy 58.8 21 0.00045 34.7 5.7 32 189-221 4-39 (325)
434 cd05276 p53_inducible_oxidored 58.7 30 0.00064 32.4 6.6 37 189-225 139-178 (323)
435 TIGR02730 carot_isom carotene 58.6 8.2 0.00018 40.6 3.0 29 192-220 2-32 (493)
436 PLN02702 L-idonate 5-dehydroge 58.6 23 0.0005 35.2 6.1 38 189-226 181-221 (364)
437 PF02737 3HCDH_N: 3-hydroxyacy 58.5 16 0.00035 33.6 4.6 37 192-228 1-39 (180)
438 PRK06753 hypothetical protein; 58.5 9.4 0.0002 37.9 3.3 30 192-221 2-33 (373)
439 TIGR03026 NDP-sugDHase nucleot 58.4 79 0.0017 32.6 10.1 33 192-224 2-36 (411)
440 COG1867 TRM1 N2,N2-dimethylgua 58.2 35 0.00075 35.7 7.3 95 190-331 53-151 (380)
441 cd08298 CAD2 Cinnamyl alcohol 57.8 70 0.0015 30.9 9.1 34 296-335 224-257 (329)
442 PRK07538 hypothetical protein; 57.6 9.4 0.0002 38.9 3.2 30 192-221 2-33 (413)
443 PLN02712 arogenate dehydrogena 57.5 43 0.00094 37.3 8.5 34 189-222 368-403 (667)
444 cd08268 MDR2 Medium chain dehy 57.5 34 0.00075 32.2 6.8 37 189-225 144-183 (328)
445 cd08256 Zn_ADH2 Alcohol dehydr 57.4 23 0.00051 34.8 5.9 37 189-225 174-213 (350)
446 PF13450 NAD_binding_8: NAD(P) 57.4 9.7 0.00021 29.5 2.6 27 195-221 1-29 (68)
447 PRK07231 fabG 3-ketoacyl-(acyl 57.4 16 0.00034 33.6 4.4 36 189-224 4-42 (251)
448 KOG1197 Predicted quinone oxid 56.5 62 0.0013 32.8 8.5 40 189-228 146-188 (336)
449 PF05971 Methyltransf_10: Prot 56.4 36 0.00078 34.5 7.0 44 189-232 102-147 (299)
450 PRK07588 hypothetical protein; 55.9 11 0.00023 38.1 3.2 29 192-220 2-32 (391)
451 PLN02780 ketoreductase/ oxidor 55.7 1E+02 0.0023 30.5 10.2 36 189-224 52-90 (320)
452 PRK09126 hypothetical protein; 55.7 10 0.00022 38.0 3.0 30 191-220 4-35 (392)
453 PRK07045 putative monooxygenas 55.4 11 0.00024 37.9 3.2 33 189-221 4-38 (388)
454 TIGR02360 pbenz_hydroxyl 4-hyd 55.3 11 0.00024 38.3 3.3 31 191-221 3-35 (390)
455 cd05279 Zn_ADH1 Liver alcohol 55.3 35 0.00077 34.0 6.8 39 189-227 183-224 (365)
456 COG0677 WecC UDP-N-acetyl-D-ma 55.3 42 0.00091 35.6 7.4 35 191-225 10-46 (436)
457 KOG2614 Kynurenine 3-monooxyge 54.7 12 0.00026 39.6 3.3 33 190-222 2-36 (420)
458 cd05280 MDR_yhdh_yhfp Yhdh and 54.6 75 0.0016 30.3 8.7 36 190-225 147-185 (325)
459 PRK05708 2-dehydropantoate 2-r 54.6 1.3E+02 0.0028 29.9 10.5 34 191-224 3-38 (305)
460 PTZ00142 6-phosphogluconate de 54.5 82 0.0018 33.7 9.7 34 192-225 3-38 (470)
461 PRK04176 ribulose-1,5-biphosph 54.4 19 0.00042 34.9 4.7 32 190-221 25-58 (257)
462 cd01483 E1_enzyme_family Super 54.2 13 0.00027 32.4 3.0 29 192-220 1-32 (143)
463 PRK12771 putative glutamate sy 53.7 17 0.00036 39.2 4.4 32 188-219 135-168 (564)
464 PLN02487 zeta-carotene desatur 53.6 15 0.00033 40.1 4.1 61 147-221 43-108 (569)
465 PRK05868 hypothetical protein; 53.5 12 0.00026 37.9 3.2 30 191-220 2-33 (372)
466 PRK06847 hypothetical protein; 53.4 14 0.00031 36.6 3.6 32 190-221 4-37 (375)
467 PF03721 UDPG_MGDP_dh_N: UDP-g 53.4 29 0.00063 32.2 5.4 34 192-225 2-37 (185)
468 TIGR03219 salicylate_mono sali 53.2 12 0.00026 38.1 3.1 31 191-221 1-34 (414)
469 cd08244 MDR_enoyl_red Possible 53.1 56 0.0012 31.1 7.6 37 189-225 142-181 (324)
470 TIGR02823 oxido_YhdH putative 52.8 96 0.0021 29.7 9.2 35 189-223 144-182 (323)
471 cd05284 arabinose_DH_like D-ar 52.6 54 0.0012 31.8 7.5 36 189-224 167-205 (340)
472 PF02636 Methyltransf_28: Puta 52.5 18 0.0004 34.7 4.1 42 190-231 19-70 (252)
473 PRK06849 hypothetical protein; 52.3 20 0.00043 36.5 4.5 36 189-224 3-41 (389)
474 PRK00421 murC UDP-N-acetylmura 52.2 16 0.00035 38.1 3.9 33 189-221 6-41 (461)
475 PRK08243 4-hydroxybenzoate 3-m 51.9 14 0.0003 37.4 3.3 31 191-221 3-35 (392)
476 cd00757 ThiF_MoeB_HesA_family 51.9 16 0.00035 34.7 3.5 33 189-221 20-55 (228)
477 cd08284 FDH_like_2 Glutathione 51.8 49 0.0011 32.1 7.1 35 296-336 234-268 (344)
478 PRK08849 2-octaprenyl-3-methyl 51.8 12 0.00027 37.6 2.9 30 191-220 4-35 (384)
479 PRK05714 2-octaprenyl-3-methyl 51.7 13 0.00027 37.7 3.0 30 192-221 4-35 (405)
480 PRK07208 hypothetical protein; 51.5 14 0.0003 38.3 3.3 31 190-220 4-36 (479)
481 PRK05562 precorrin-2 dehydroge 51.4 74 0.0016 30.8 8.0 37 189-225 24-64 (223)
482 PRK06126 hypothetical protein; 51.2 14 0.0003 39.2 3.3 31 189-219 6-38 (545)
483 PLN02350 phosphogluconate dehy 51.1 1.4E+02 0.003 32.3 10.8 104 190-338 6-111 (493)
484 TIGR03201 dearomat_had 6-hydro 51.1 26 0.00057 34.7 5.1 41 188-228 165-207 (349)
485 PRK08013 oxidoreductase; Provi 51.0 14 0.00031 37.5 3.2 31 191-221 4-36 (400)
486 PRK08773 2-octaprenyl-3-methyl 50.9 15 0.00032 37.0 3.3 32 189-220 5-38 (392)
487 PRK12769 putative oxidoreducta 50.8 16 0.00034 40.2 3.7 32 189-220 326-359 (654)
488 PLN02668 indole-3-acetate carb 50.6 21 0.00045 37.4 4.4 25 351-375 284-309 (386)
489 PRK06184 hypothetical protein; 50.5 15 0.00033 38.6 3.5 31 190-220 3-35 (502)
490 cd08249 enoyl_reductase_like e 50.4 43 0.00093 32.9 6.4 33 189-222 154-189 (339)
491 cd01487 E1_ThiF_like E1_ThiF_l 50.4 16 0.00034 33.5 3.1 30 192-221 1-33 (174)
492 PRK12767 carbamoyl phosphate s 50.2 20 0.00043 35.1 4.1 31 191-221 2-35 (326)
493 PRK08850 2-octaprenyl-6-methox 50.1 14 0.00031 37.4 3.1 30 191-220 5-36 (405)
494 cd08259 Zn_ADH5 Alcohol dehydr 50.0 69 0.0015 30.6 7.7 36 189-224 162-200 (332)
495 KOG1209 1-Acyl dihydroxyaceton 49.9 18 0.00039 35.7 3.5 33 189-221 6-42 (289)
496 PF11599 AviRa: RRNA methyltra 49.8 43 0.00093 32.9 6.0 45 189-233 51-99 (246)
497 PRK08293 3-hydroxybutyryl-CoA 49.8 26 0.00057 34.2 4.8 37 191-227 4-42 (287)
498 PRK12831 putative oxidoreducta 49.8 17 0.00037 38.2 3.7 32 189-220 139-172 (464)
499 cd08291 ETR_like_1 2-enoyl thi 49.6 41 0.00089 32.6 6.1 38 190-227 143-184 (324)
500 TIGR01984 UbiH 2-polyprenyl-6- 49.5 13 0.00029 36.9 2.8 29 193-221 2-33 (382)
No 1
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=100.00 E-value=9.7e-82 Score=610.58 Aligned_cols=254 Identities=54% Similarity=0.969 Sum_probs=237.7
Q ss_pred CchhhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCC-CCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCC
Q 015966 142 LADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGRLALEISHLGFISQGNEFS 220 (397)
Q Consensus 142 ~~d~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~-~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S 220 (397)
..|++||+++|+|++||||+||+.||+++|+||++.|++++|. ...+.+.+|||||||+||||+|||++||.|+|||+|
T Consensus 8 ~~d~~kV~s~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S 87 (270)
T PF07942_consen 8 PSDMDKVRSTLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFS 87 (270)
T ss_pred hhhHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEch
Confidence 4999999999999999999999999999999999999999984 334578999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCC-CCCCCcceeEecccccccCCCCCCCCcc
Q 015966 221 YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVYSDPSQVGAWD 299 (397)
Q Consensus 221 ~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~-~~~~~~ls~~~GDF~ely~~~~~~~~fD 299 (397)
++||++++||||++.+.++++||||+|++||+.++++|+|+++|||+.|.. ...+.+|+|++|||+++|..+...++||
T Consensus 88 ~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d 167 (270)
T PF07942_consen 88 YFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFD 167 (270)
T ss_pred HHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCccc
Confidence 999999999999999999999999999999999999999999999999976 4556789999999999998654568999
Q ss_pred EEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe-ecCC
Q 015966 300 AVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK-TIET 378 (397)
Q Consensus 300 ~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~-~i~~ 378 (397)
+||||||||||+||++||++|+++|||||+|||+|||+|||++. +.+++.++|||+|||+++++++||++++++ .+.+
T Consensus 168 ~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~-~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~i~~ 246 (270)
T PF07942_consen 168 VVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM-SIPNEMSVELSLEEIKELIEKLGFEIEKEESSILS 246 (270)
T ss_pred EEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC-CCCCCcccCCCHHHHHHHHHHCCCEEEEEEEeeec
Confidence 99999999999999999999999999999999999999999974 234456899999999999999999999987 4999
Q ss_pred CCCCCccccccccccccc
Q 015966 379 TYTTNPRSMMQVSFLPCT 396 (397)
Q Consensus 379 ~Y~~d~~sm~~~~Y~c~~ 396 (397)
+|++|++||+|+.|+|.|
T Consensus 247 ~Y~~d~~Sm~q~~Y~~~~ 264 (270)
T PF07942_consen 247 GYTTDPESMMQTYYGCVF 264 (270)
T ss_pred CCCCCHHHHhhCccccEE
Confidence 999999999999999987
No 2
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.5e-81 Score=609.32 Aligned_cols=288 Identities=56% Similarity=0.931 Sum_probs=266.1
Q ss_pred ccccchhHhhhhccccccccCCCCCCCCCCCCCc-ccCCCCCchhhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHh
Q 015966 102 KLENREETNQSCSNDFTDSNGNASSPACDWLDPS-IQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDA 180 (397)
Q Consensus 102 ~~~~n~~~~~~~~~~~~~~~g~~~~~~~~w~~~~-~~~~~~~~d~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~ 180 (397)
.|+-|..+...++... +..-.+|...+ ...++.+.+|.||+|+|+|++||||+||+.||+++|+||+++|..
T Consensus 68 ~I~~N~~v~r~Ia~~~-------~~~f~ed~~~~~~~~~~n~~~m~kv~s~l~~i~RdwssE~~~ERd~~ykpii~~l~~ 140 (369)
T KOG2798|consen 68 CIEENSRVIRAIAEEC-------PFEFTEDHDQKGELAQVNPDFMSKVSSTLKQICRDWSSEGQRERDQLYKPIIEELNS 140 (369)
T ss_pred HHHhhhHHHHHHHhhC-------ccccchhhhcccceecCCHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhHHHHHHh
Confidence 3778888888877722 23444577766 778888999999999999999999999999999999999999999
Q ss_pred hCCCCC-CCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCc
Q 015966 181 LFPNRS-KESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQL 259 (397)
Q Consensus 181 ~~p~~~-~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~ql 259 (397)
+||... .+.+.+|||||||+||||++||..||.+|||||||+||++|.||||.++.+++++||||||++||+++++|||
T Consensus 141 lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQl 220 (369)
T KOG2798|consen 141 LFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQL 220 (369)
T ss_pred hCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccccccccc
Confidence 999643 4578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCC-CCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcc
Q 015966 260 RPVSIPDIHPA-SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLY 338 (397)
Q Consensus 260 r~v~iPDv~p~-~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlY 338 (397)
|+++|||+.|. ..+....|+|++|||+++|+.+...+.||+||||||||||+||++||++|+++|||||+|||+|||+|
T Consensus 221 rpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlY 300 (369)
T KOG2798|consen 221 RPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLY 300 (369)
T ss_pred ccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceee
Confidence 99999999997 56667789999999999998766667899999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCCCccccccccccccc
Q 015966 339 HFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQVSFLPCT 396 (397)
Q Consensus 339 h~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~d~~sm~~~~Y~c~~ 396 (397)
||+++.|-.+++++|||.|+|.++++..||++++++.|+++|+.||+||+++.|.|+|
T Consensus 301 HF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~Y~~nprsm~~~~Y~~~y 358 (369)
T KOG2798|consen 301 HFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKERGIDTTYGTNPRSMMENRYQCHY 358 (369)
T ss_pred eccCCCCCcccccccccHHHHHHHHHhcCcEEEEeeeeecccCCCHHHHhhhccccee
Confidence 9999877677889999999999999999999999999999999999999999999986
No 3
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.67 E-value=9.3e-16 Score=141.94 Aligned_cols=136 Identities=19% Similarity=0.227 Sum_probs=95.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..||++|+.|+|+|+|..|+..++-..... .+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~--------------------------~~------ 77 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAE--------------------------NL------ 77 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------CC------
Confidence 4579999999999999999999999999999999998766332110 00
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeec---cCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF---IDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FF---IDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
.++.+..+|+.++.. .++||+|++.+. ++ ..++..+++.++++|||||++|-+..+ ..++. .
T Consensus 78 -------~~v~~~~~d~~~~~~----~~~fD~I~~~~~~~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~~~--~~~~~-~ 142 (197)
T PRK11207 78 -------DNLHTAVVDLNNLTF----DGEYDFILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVAAM--DTADY-P 142 (197)
T ss_pred -------CcceEEecChhhCCc----CCCcCEEEEecchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEe--cCCCC-C
Confidence 114556677765421 367999998753 33 345889999999999999997542211 11110 0
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
......+.++.+|+.+.++ ||+++.-
T Consensus 143 ~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 143 CTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 0111246799999999996 9999884
No 4
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.66 E-value=7.3e-16 Score=133.76 Aligned_cols=146 Identities=22% Similarity=0.318 Sum_probs=101.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
+.+.|.++.+.. .++.+|||+|||.|.++..|++.|++|+|+|+|..|+.. .+
T Consensus 9 ~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----~~--------------------- 61 (161)
T PF13489_consen 9 YADLLERLLPRL--KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----RN--------------------- 61 (161)
T ss_dssp HHHHHHHHHTCT--TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----TT---------------------
T ss_pred HHHHHHHHhccc--CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----hh---------------------
Confidence 444444444321 267899999999999999999999999999999999853 00
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
+. ....... +.. ...++||+|+++..|...+|...+|+.|+++|||||+++-.
T Consensus 62 --------~~--------------~~~~~~~--~~~---~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 62 --------VV--------------FDNFDAQ--DPP---FPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp --------SE--------------EEEEECH--THH---CHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEE
T ss_pred --------hh--------------hhhhhhh--hhh---ccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEE
Confidence 00 0111111 111 12579999999988877778999999999999999999965
Q ss_pred cCCcch-----hhhc-cCCCC-CccccCCHHHHHHHHHhCCCEEEEE
Q 015966 334 GPLLYH-----FADL-YGQED-EMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 334 GPLlYh-----~~d~-~g~~~-~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
-|..+. +... +.... .....++.++++.+++++||++++|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~~ 161 (161)
T PF13489_consen 115 DPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVEE 161 (161)
T ss_dssp EEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE-
T ss_pred EcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEEC
Confidence 454321 1110 00000 1234689999999999999999875
No 5
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.65 E-value=4.5e-15 Score=141.87 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=109.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..||++|..|+|+|+|..|+..|+-.....
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~---------------------------------- 89 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAK---------------------------------- 89 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 4579999999999999999999999999999999998776322100
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe----cCCcc------
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL----GPLLY------ 338 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~----GPLlY------ 338 (397)
....++.++.+|+.++-. ...++||+|++...+.-..+...+++.++++|||||+++-. ..+.+
T Consensus 90 ----g~~~~v~~~~~d~~~l~~--~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~ 163 (255)
T PRK11036 90 ----GVSDNMQFIHCAAQDIAQ--HLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAG 163 (255)
T ss_pred ----CCccceEEEEcCHHHHhh--hcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHcc
Confidence 011236788889877532 22578999998765554456678999999999999999732 11111
Q ss_pred --hhhhc-cCC----CCCccccCCHHHHHHHHHhCCCEEEEEeecC--CCCCCCcc
Q 015966 339 --HFADL-YGQ----EDEMSIELSLEDVKRVALHYGFEFEKEKTIE--TTYTTNPR 385 (397)
Q Consensus 339 --h~~d~-~g~----~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~--~~Y~~d~~ 385 (397)
++... ... .......++.+++.+++++.||+++....+. ..|..+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~gi~~~~~~~~~~~ 219 (255)
T PRK11036 164 NFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKTGVRVFHDYLRNKH 219 (255)
T ss_pred ChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeeeeEEEEeeccCccc
Confidence 11000 000 0001235899999999999999999876543 45676644
No 6
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.64 E-value=3.8e-15 Score=137.68 Aligned_cols=137 Identities=15% Similarity=0.125 Sum_probs=92.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..||++|+.|+|+|+|..|+..++-... .. .+.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~---~~-----------------------~~~----- 78 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKA---RE-----------------------NLP----- 78 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHH---Hh-----------------------CCC-----
Confidence 35699999999999999999999999999999999986653221 00 000
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
+....+|+... .. .++||+|++.+.+. ...++..+++.++++|||||+++-+ .|...+....
T Consensus 79 ---------v~~~~~d~~~~-~~---~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~---~~~~~~~~~~ 142 (195)
T TIGR00477 79 ---------LRTDAYDINAA-AL---NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV---AAMDTADYPC 142 (195)
T ss_pred ---------ceeEeccchhc-cc---cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE---EecccCCCCC
Confidence 23445565432 11 35799999874322 2356889999999999999985521 1211111111
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.+...+.++.+||++++. +|+++...
T Consensus 143 ~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 143 HMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred CCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 122356799999999995 59998843
No 7
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.64 E-value=1.5e-15 Score=143.98 Aligned_cols=164 Identities=22% Similarity=0.305 Sum_probs=102.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
-+.+.+++.+. .. .++.+|||||||.|..+..||++||+|+|+|+|...+..+. ..+.. .|-+.
T Consensus 23 ~p~L~~~~~~l-~~---~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~--~e~~~-------~~~~~--- 86 (218)
T PF05724_consen 23 NPALVEYLDSL-AL---KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAF--EENNL-------EPTVT--- 86 (218)
T ss_dssp THHHHHHHHHH-TT---STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHH--HHCTT-------EEECT---
T ss_pred CHHHHHHHHhc-CC---CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHH--HHhcc-------CCCcc---
Confidence 34455555552 21 25679999999999999999999999999999998876542 11100 00000
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe-ec--cCChhhHHHHHHHHHHhccCC
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FF--IDTAHNIVEYIEIISRILKDG 327 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~-FF--IDta~Ni~~yi~~I~~~LKPG 327 (397)
. ..... .....++++.+|||+++.. ...++||+|+-+ +| |+. .-..+|.+.+.++||||
T Consensus 87 ----~---~~~~~--------~~~~~~i~~~~gDfF~l~~--~~~g~fD~iyDr~~l~Alpp-~~R~~Ya~~l~~ll~p~ 148 (218)
T PF05724_consen 87 ----S---VGGFK--------RYQAGRITIYCGDFFELPP--EDVGKFDLIYDRTFLCALPP-EMRERYAQQLASLLKPG 148 (218)
T ss_dssp ----T---CTTEE--------EETTSSEEEEES-TTTGGG--SCHHSEEEEEECSSTTTS-G-GGHHHHHHHHHHCEEEE
T ss_pred ----c---cccee--------eecCCceEEEEcccccCCh--hhcCCceEEEEecccccCCH-HHHHHHHHHHHHHhCCC
Confidence 0 00000 0012358999999999753 233689999965 33 443 34789999999999999
Q ss_pred cEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 328 G~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
|.++-+. +.|..... .++ ++.++.+||++++. .+|+++...
T Consensus 149 g~~lLi~-l~~~~~~~-~GP---Pf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 149 GRGLLIT-LEYPQGEM-EGP---PFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp EEEEEEE-EES-CSCS-SSS---S----HHHHHHHHT-TTEEEEEEE
T ss_pred CcEEEEE-EEcCCcCC-CCc---CCCCCHHHHHHHhc-CCcEEEEEe
Confidence 9954221 33432222 123 47899999999998 699998844
No 8
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.63 E-value=8.8e-15 Score=138.02 Aligned_cols=150 Identities=15% Similarity=0.138 Sum_probs=97.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||||||.||.+..||++|++|+|+|+|..++..+. +.. ... ....++ .+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~---~~~----~~~------------~~~~~~-----~~~- 88 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFF---AEN----GLT------------PTVTQQ-----GEF- 88 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHH---HHc----CCC------------cceecc-----ccc-
Confidence 4569999999999999999999999999999999987432 110 000 000000 000
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCC-hhhHHHHHHHHHHhccCCcEEEEecCCcchhhh-ccC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT-AHNIVEYIEIISRILKDGGVWINLGPLLYHFAD-LYG 345 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt-a~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d-~~g 345 (397)
+.....++.+..+||.++.. ...+.||.|+-+- |+.. ......|++.|.++|||||+++-+ .|.+.. ..+
T Consensus 89 --~~~~~~~v~~~~~D~~~~~~--~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~---~~~~~~~~~~ 161 (213)
T TIGR03840 89 --TRYRAGNIEIFCGDFFALTA--ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI---TLDYDQSEMA 161 (213)
T ss_pred --eeeecCceEEEEccCCCCCc--ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE---EEEcCCCCCC
Confidence 00012348899999988632 1236799998653 3332 233578999999999999975531 122211 112
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
++ .+.++.+||++++.. +|+++..+
T Consensus 162 gp---p~~~~~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 162 GP---PFSVSPAEVEALYGG-HYEIELLE 186 (213)
T ss_pred Cc---CCCCCHHHHHHHhcC-CceEEEEe
Confidence 22 367999999999964 67777744
No 9
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.63 E-value=6e-15 Score=140.87 Aligned_cols=164 Identities=11% Similarity=0.093 Sum_probs=106.5
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
-+.+.+++.+.-+ .++.||||||||.|+.+..||.+||+|+|+|+|...+..+. . +..+.|-+..
T Consensus 29 np~L~~~~~~l~~----~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~--~-------e~~~~~~~~~-- 93 (226)
T PRK13256 29 NEFLVKHFSKLNI----NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFF--S-------QNTINYEVIH-- 93 (226)
T ss_pred CHHHHHHHHhcCC----CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHH--H-------HcCCCcceec--
Confidence 3445566655422 24579999999999999999999999999999998876432 1 0111110000
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe-eccC-ChhhHHHHHHHHHHhccCCc
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFID-TAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~-FFID-ta~Ni~~yi~~I~~~LKPGG 328 (397)
. +.. ......++.+.+|||+++-..+...+.||+|+-+ +|+. ..+-..+|++.+.++|+|||
T Consensus 94 -----~---~~~--------~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg 157 (226)
T PRK13256 94 -----G---NDY--------KLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNT 157 (226)
T ss_pred -----c---ccc--------ceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCc
Confidence 0 000 0011234899999999974211234689999854 3433 22347799999999999999
Q ss_pred EEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 329 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 329 ~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.++-+ .+.+....+++ ++.++.+||++++.. +|++..
T Consensus 158 ~llll---~~~~~~~~~GP---Pf~v~~~e~~~lf~~-~~~i~~ 194 (226)
T PRK13256 158 QILLL---VMEHDKKSQTP---PYSVTQAELIKNFSA-KIKFEL 194 (226)
T ss_pred EEEEE---EEecCCCCCCC---CCcCCHHHHHHhccC-CceEEE
Confidence 99963 34443322333 477999999999965 455544
No 10
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.62 E-value=5.6e-15 Score=142.03 Aligned_cols=154 Identities=22% Similarity=0.243 Sum_probs=112.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
|-..+.+.... .++.+|||+|||||.+|..||+.. .+|+|+|+|..||..++-- ..
T Consensus 39 Wr~~~i~~~~~---~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k---~~---------------- 96 (238)
T COG2226 39 WRRALISLLGI---KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREK---LK---------------- 96 (238)
T ss_pred HHHHHHHhhCC---CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHH---hh----------------
Confidence 55555554432 268899999999999999999996 7899999999999887621 11
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
+.. ..+++++.||+.++ |+.+++||+|...|=|....++..+|++++|+|||||+++
T Consensus 97 --------------~~~------~~~i~fv~~dAe~L---Pf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 97 --------------KKG------VQNVEFVVGDAENL---PFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred --------------ccC------ccceEEEEechhhC---CCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 100 01288999999886 3568999999999988888899999999999999999988
Q ss_pred Ee-------cCC--cch---hhhc---cCC----CCC--------ccccCCHHHHHHHHHhCCCEEEE
Q 015966 332 NL-------GPL--LYH---FADL---YGQ----EDE--------MSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 332 N~-------GPL--lYh---~~d~---~g~----~~~--------~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.+ +++ .|+ +... .|. ..+ ..-.++.+++.+++++.||+.+.
T Consensus 154 vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 154 VLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred EEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 52 222 122 1100 110 000 11236999999999999999877
No 11
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.62 E-value=2.3e-14 Score=138.40 Aligned_cols=191 Identities=18% Similarity=0.138 Sum_probs=119.8
Q ss_pred CchhhHHHHHHHHHHhcccccChhHHhh----chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeE
Q 015966 142 LADVDKVRCIIRNIVRDWAAEGKTERDQ----CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FIS 214 (397)
Q Consensus 142 ~~d~dkv~stL~q~~RDWS~eG~~ER~~----~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V 214 (397)
..|+-++.+.++++...++.....-.+. ....+-..+.+.... .++.+|||+|||+|+++..|+++ | ..|
T Consensus 25 ~~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~~~~V 101 (261)
T PLN02233 25 RRDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGSDGKV 101 (261)
T ss_pred cCChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCCEE
Confidence 3566666666665555555433321111 011122222222221 25679999999999999999986 4 389
Q ss_pred EEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCC
Q 015966 215 QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQ 294 (397)
Q Consensus 215 ~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~ 294 (397)
+|+|+|..||..|+--.+... . ....++.++.+|+.++ |..
T Consensus 102 ~gvD~S~~ml~~A~~r~~~~~---------------------~---------------~~~~~i~~~~~d~~~l---p~~ 142 (261)
T PLN02233 102 MGLDFSSEQLAVAASRQELKA---------------------K---------------SCYKNIEWIEGDATDL---PFD 142 (261)
T ss_pred EEEECCHHHHHHHHHHhhhhh---------------------h---------------ccCCCeEEEEcccccC---CCC
Confidence 999999999987651110000 0 0012377899998775 234
Q ss_pred CCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE--ecC-------Ccchhhh---------ccCCCCC-------
Q 015966 295 VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN--LGP-------LLYHFAD---------LYGQEDE------- 349 (397)
Q Consensus 295 ~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN--~GP-------LlYh~~d---------~~g~~~~------- 349 (397)
+++||+|++.|-+...+|...++++++++|||||.++- +++ .++.|.- .++..+.
T Consensus 143 ~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s 222 (261)
T PLN02233 143 DCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSS 222 (261)
T ss_pred CCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHH
Confidence 67899999888777777889999999999999999874 221 1111100 0010000
Q ss_pred ccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 350 MSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 350 ~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
....+|.+|+.++++++||+.++..
T Consensus 223 ~~~f~s~~el~~ll~~aGF~~~~~~ 247 (261)
T PLN02233 223 INEYLTGEELEKLALEAGFSSAKHY 247 (261)
T ss_pred HHhcCCHHHHHHHHHHCCCCEEEEE
Confidence 0124799999999999999988754
No 12
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.62 E-value=1.8e-14 Score=136.30 Aligned_cols=169 Identities=17% Similarity=0.145 Sum_probs=106.3
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 169 ~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
...+.+.+++.+... .++.+|||||||.||.+..||++|++|+|+|+|..++..+. ...... +
T Consensus 21 ~p~~~L~~~~~~~~~----~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~--~~~~l~-------~---- 83 (218)
T PRK13255 21 EVNPLLQKYWPALAL----PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF--AENGLT-------P---- 83 (218)
T ss_pred CCCHHHHHHHHhhCC----CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH--HHcCCC-------c----
Confidence 345566666655322 14579999999999999999999999999999999886431 110000 0
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe-eccC-ChhhHHHHHHHHHHhccC
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFID-TAHNIVEYIEIISRILKD 326 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~-FFID-ta~Ni~~yi~~I~~~LKP 326 (397)
...+..........++.+.++|+.++-. ...+.||.|+-. +|+. ..+...+|++.|.++|||
T Consensus 84 --------------~~~~~~~~~~~~~~~v~~~~~D~~~l~~--~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p 147 (218)
T PRK13255 84 --------------QTRQSGEFEHYQAGEITIYCGDFFALTA--ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPA 147 (218)
T ss_pred --------------cccccccccccccCceEEEECcccCCCc--ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC
Confidence 0000000000112348899999988632 223689999943 2222 233467999999999999
Q ss_pred CcEEEEecCCcchhh-hccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecC
Q 015966 327 GGVWINLGPLLYHFA-DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIE 377 (397)
Q Consensus 327 GG~wIN~GPLlYh~~-d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~ 377 (397)
||+++-+ .+.+. +..+++ ++.++.+||++++.. +|+++..+...
T Consensus 148 gG~~~l~---~~~~~~~~~~gP---p~~~~~~el~~~~~~-~~~i~~~~~~~ 192 (218)
T PRK13255 148 GCRGLLV---TLDYPQEELAGP---PFSVSDEEVEALYAG-CFEIELLERQD 192 (218)
T ss_pred CCeEEEE---EEEeCCccCCCC---CCCCCHHHHHHHhcC-CceEEEeeecc
Confidence 9864421 11122 112223 367999999999964 48888755443
No 13
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.60 E-value=3.6e-14 Score=134.67 Aligned_cols=174 Identities=11% Similarity=0.109 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHH
Q 015966 145 VDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 145 ~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML 224 (397)
..+|+......+..|..... ....+.+.|.+.++. .+..+|||+|||+|.++..|++.|..|+|+|+|..|+
T Consensus 6 k~~i~~~F~~aa~~Y~~~~~-----~q~~~a~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l 77 (251)
T PRK10258 6 KQAIAAAFGRAAAHYEQHAE-----LQRQSADALLAMLPQ---RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPML 77 (251)
T ss_pred HHHHHHHHHHHHHhHhHHHH-----HHHHHHHHHHHhcCc---cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHH
Confidence 34555444444445543222 223466666666653 2467899999999999999999999999999999999
Q ss_pred HHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe
Q 015966 225 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (397)
Q Consensus 225 ~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~ 304 (397)
..++-.. + ...++.+|+.++. ..+++||+|++.
T Consensus 78 ~~a~~~~---------------------------------~-----------~~~~~~~d~~~~~---~~~~~fD~V~s~ 110 (251)
T PRK10258 78 AQARQKD---------------------------------A-----------ADHYLAGDIESLP---LATATFDLAWSN 110 (251)
T ss_pred HHHHhhC---------------------------------C-----------CCCEEEcCcccCc---CCCCcEEEEEEC
Confidence 7655110 0 0245677876642 235789999998
Q ss_pred eccCChhhHHHHHHHHHHhccCCcEEEEe--cCCcch-hhhc---cCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 305 FFIDTAHNIVEYIEIISRILKDGGVWINL--GPLLYH-FADL---YGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 305 FFIDta~Ni~~yi~~I~~~LKPGG~wIN~--GPLlYh-~~d~---~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
+.+....++...|..++++|||||+++-. ++-.+. +... .+..+...--++.+++..++...||+...+
T Consensus 111 ~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 185 (251)
T PRK10258 111 LAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQHHIQ 185 (251)
T ss_pred chhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCceeeee
Confidence 87766667889999999999999999953 321111 1110 011111122479999999999888876443
No 14
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.60 E-value=2e-14 Score=137.18 Aligned_cols=134 Identities=14% Similarity=0.069 Sum_probs=96.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..|+-
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~------------------------------------- 71 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE------------------------------------- 71 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-------------------------------------
Confidence 5679999999999999999998 7899999999999976540
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC-----cch--
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL-----LYH-- 339 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL-----lYh-- 339 (397)
.++.+..+|+.++.. .++||+|++.+.+...++....++.++++|||||+++-.-|. .+.
T Consensus 72 ---------~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 138 (255)
T PRK14103 72 ---------RGVDARTGDVRDWKP----KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAV 138 (255)
T ss_pred ---------cCCcEEEcChhhCCC----CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHH
Confidence 014567788876532 478999999876655567789999999999999999842111 110
Q ss_pred --------hhhccCCCC--CccccCCHHHHHHHHHhCCCEEEE
Q 015966 340 --------FADLYGQED--EMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 340 --------~~d~~g~~~--~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
|.......+ ......+.+++.++++++||++..
T Consensus 139 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 139 RALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDA 181 (255)
T ss_pred HHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEE
Confidence 000000000 012246899999999999998654
No 15
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.60 E-value=4.7e-14 Score=140.97 Aligned_cols=160 Identities=14% Similarity=0.129 Sum_probs=110.1
Q ss_pred HHHHHHhhCCCCC----CCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 174 ILEELDALFPNRS----KESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 174 Il~~L~~~~p~~~----~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
|.+.|.++++... ..++.+|||+|||+|+++..||+.|+.|+|+|.|..|+..|+-... .
T Consensus 112 i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~---~------------- 175 (322)
T PLN02396 112 IRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHAD---M------------- 175 (322)
T ss_pred HHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---h-------------
Confidence 4445555554321 1245699999999999999999999999999999999987762110 0
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcE
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~ 329 (397)
+ . ...++.++.+|+.++- ...++||+|++...|....+...+++.++++|||||+
T Consensus 176 -------~---~------------~~~~i~~~~~dae~l~---~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~ 230 (322)
T PLN02396 176 -------D---P------------VTSTIEYLCTTAEKLA---DEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGA 230 (322)
T ss_pred -------c---C------------cccceeEEecCHHHhh---hccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcE
Confidence 0 0 0123778889987753 2357899999987776666788999999999999999
Q ss_pred EEEe--cCCc--chhh---hc--cC-CCCCc---cccCCHHHHHHHHHhCCCEEEEEe
Q 015966 330 WINL--GPLL--YHFA---DL--YG-QEDEM---SIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 330 wIN~--GPLl--Yh~~---d~--~g-~~~~~---~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+|-. ..-. |... .. .. .+... .-.++.+|+.+++++.||++++..
T Consensus 231 liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 231 TVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred EEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 9932 1110 1000 00 00 01111 124799999999999999999865
No 16
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.60 E-value=2.4e-15 Score=143.70 Aligned_cols=143 Identities=24% Similarity=0.289 Sum_probs=75.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||||.++..|+++ | ..|+|+|+|..||..|+--+... +
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~--------------------------~---- 96 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE--------------------------G---- 96 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT--------------------------T----
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh--------------------------C----
Confidence 5779999999999999999986 3 58999999999998877322100 0
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe------cCCc--
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL------GPLL-- 337 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~------GPLl-- 337 (397)
..++.+++||..++- ..+++||+|++.|-|...+|+...+++++|+|||||+++-+ .|++
T Consensus 97 ---------~~~i~~v~~da~~lp---~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~ 164 (233)
T PF01209_consen 97 ---------LQNIEFVQGDAEDLP---FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRA 164 (233)
T ss_dssp -----------SEEEEE-BTTB-----S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHH
T ss_pred ---------CCCeeEEEcCHHHhc---CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhc
Confidence 013789999988863 34799999998887887788999999999999999999841 1111
Q ss_pred -chh-h----hccC----CC-C-----Cccc--cCCHHHHHHHHHhCCCEEEEE
Q 015966 338 -YHF-A----DLYG----QE-D-----EMSI--ELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 338 -Yh~-~----d~~g----~~-~-----~~~i--eLS~EEl~~ll~~~GFeii~e 373 (397)
|.+ - ...| +. . ..++ -.+.+|+.++++++||+.++-
T Consensus 165 ~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 165 LYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEY 218 (233)
T ss_dssp HHHH--------------------------------------------------
T ss_pred eeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 110 0 0001 00 0 0122 258999999999999997663
No 17
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.59 E-value=8.4e-15 Score=121.02 Aligned_cols=101 Identities=23% Similarity=0.318 Sum_probs=78.1
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|+++.++++ .|.+|+|+|+|+.|+..++-.... .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~----------------------------- 48 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE---E----------------------------- 48 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH---T-----------------------------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh---c-----------------------------
Confidence 357999999999999999999 899999999999999877732200 0
Q ss_pred CCCCCCCCCCcceeEeccc-ccccCCCCCCCCccEEEEeec-c---CChhhHHHHHHHHHHhccCCcEEE
Q 015966 267 IHPASAGITEGFSMCGGDF-VEVYSDPSQVGAWDAVVTCFF-I---DTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF-~ely~~~~~~~~fD~VvT~FF-I---Dta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
....++.++.+|+ .+.. ..+.||+|++..| + -..++..++++.+++.|||||++|
T Consensus 49 ------~~~~~i~~~~~d~~~~~~----~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lv 108 (112)
T PF12847_consen 49 ------GLSDRITFVQGDAEFDPD----FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLV 108 (112)
T ss_dssp ------TTTTTEEEEESCCHGGTT----TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ------CCCCCeEEEECccccCcc----cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEE
Confidence 1123588999999 3322 2467999998872 2 112567889999999999999998
No 18
>PLN02244 tocopherol O-methyltransferase
Probab=99.57 E-value=5.9e-14 Score=140.43 Aligned_cols=145 Identities=15% Similarity=0.115 Sum_probs=102.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..||++ |..|+|+|+|..|+..++-.....
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~--------------------------------- 164 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ--------------------------------- 164 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc---------------------------------
Confidence 5679999999999999999997 899999999999998766332110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCc--ch-hhhcc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL--YH-FADLY 344 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLl--Yh-~~d~~ 344 (397)
....++.+..+|+.++. ..+++||+|++..-+....+...++++++++|||||+++-..... .. .+...
T Consensus 165 -----g~~~~v~~~~~D~~~~~---~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l 236 (340)
T PLN02244 165 -----GLSDKVSFQVADALNQP---FEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSL 236 (340)
T ss_pred -----CCCCceEEEEcCcccCC---CCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccC
Confidence 01123778889987752 346899999987666555678899999999999999998521110 00 00000
Q ss_pred -----------CCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 345 -----------GQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 345 -----------g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
...-...-..+.+++.++++++||+.++..
T Consensus 237 ~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~ 277 (340)
T PLN02244 237 KPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTE 277 (340)
T ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEee
Confidence 000000112489999999999999988754
No 19
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.55 E-value=1.7e-13 Score=130.34 Aligned_cols=138 Identities=12% Similarity=0.019 Sum_probs=98.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|+++..||++ +..|+|+|+|..|+..++..+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----------------------------------- 75 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----------------------------------- 75 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----------------------------------
Confidence 5679999999999999999987 578999999999997655110
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcc---h---h
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLY---H---F 340 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlY---h---~ 340 (397)
.++.+..+|+.++.. .++||+|++.+.++-..+...+++.++++|||||+++-..|-.+ . .
T Consensus 76 ---------~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~ 142 (258)
T PRK01683 76 ---------PDCQFVEADIASWQP----PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLM 142 (258)
T ss_pred ---------CCCeEEECchhccCC----CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHH
Confidence 014567788766532 36899999988776666778999999999999999986433211 0 0
Q ss_pred ---------hhccCCCC-CccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 341 ---------ADLYGQED-EMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 341 ---------~d~~g~~~-~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
...++... ......+.+++.+++...||.+...+
T Consensus 143 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~ 186 (258)
T PRK01683 143 REVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAACRVDIWH 186 (258)
T ss_pred HHHHccCchHHHhccccccCcCCCCHHHHHHHHHhCCCceeeee
Confidence 00000000 11234688999999999999875544
No 20
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.55 E-value=2.9e-14 Score=112.82 Aligned_cols=93 Identities=27% Similarity=0.355 Sum_probs=72.6
Q ss_pred EEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCC
Q 015966 194 LVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASA 272 (397)
Q Consensus 194 LvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~ 272 (397)
||+|||+|+.+..|+++ +..|+|+|+|..|+..++-...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~---------------------------------------- 40 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK---------------------------------------- 40 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT----------------------------------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc----------------------------------------
Confidence 89999999999999999 9999999999999976663211
Q ss_pred CCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 273 GITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 273 ~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
..+.++..+|+.++ |..+++||+|+++..+.-.++...++++|+|+|||||++|
T Consensus 41 --~~~~~~~~~d~~~l---~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 41 --NEGVSFRQGDAEDL---PFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp --TSTEEEEESBTTSS---SS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEE
T ss_pred --ccCchheeehHHhC---ccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEe
Confidence 01244788898776 2457899999988655444789999999999999999987
No 21
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.54 E-value=4.4e-13 Score=125.17 Aligned_cols=185 Identities=14% Similarity=0.189 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCH
Q 015966 145 VDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSY 221 (397)
Q Consensus 145 ~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~ 221 (397)
..+|+....+++..|-.-....--..+..+.+.+.+.+.. .++.+|||+|||+|.++..|++. +..|+|+|+|.
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 80 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE 80 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH
Confidence 3566666666666665311100000011122223333321 25679999999999999999976 35899999999
Q ss_pred HHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEE
Q 015966 222 YMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAV 301 (397)
Q Consensus 222 ~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~V 301 (397)
.|+..++-.+... . ..++.++.+|+.++- ...++||+|
T Consensus 81 ~~~~~a~~~~~~~----------------------------~-----------~~~v~~~~~d~~~~~---~~~~~fD~V 118 (231)
T TIGR02752 81 NMLSVGRQKVKDA----------------------------G-----------LHNVELVHGNAMELP---FDDNSFDYV 118 (231)
T ss_pred HHHHHHHHHHHhc----------------------------C-----------CCceEEEEechhcCC---CCCCCccEE
Confidence 9997766322100 0 012677888887642 235789999
Q ss_pred EEeeccCChhhHHHHHHHHHHhccCCcEEEEe--c-CCcchhhh---------------ccCCC--------CCccccCC
Q 015966 302 VTCFFIDTAHNIVEYIEIISRILKDGGVWINL--G-PLLYHFAD---------------LYGQE--------DEMSIELS 355 (397)
Q Consensus 302 vT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~--G-PLlYh~~d---------------~~g~~--------~~~~ieLS 355 (397)
++.+.+...++..+.++.+.++|||||++|-+ + |-...+.. ..+.. +...-.++
T Consensus 119 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (231)
T TIGR02752 119 TIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPG 198 (231)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCC
Confidence 98887777777889999999999999999842 1 11100000 00000 00011358
Q ss_pred HHHHHHHHHhCCCEEEEEe
Q 015966 356 LEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 356 ~EEl~~ll~~~GFeii~e~ 374 (397)
.+|++++++++||+.++.+
T Consensus 199 ~~~l~~~l~~aGf~~~~~~ 217 (231)
T TIGR02752 199 MDELAEMFQEAGFKDVEVK 217 (231)
T ss_pred HHHHHHHHHHcCCCeeEEE
Confidence 8999999999999988754
No 22
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.54 E-value=1.6e-13 Score=136.75 Aligned_cols=143 Identities=15% Similarity=0.103 Sum_probs=99.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|++++.+|..|.. |+|+|.|..|+..++.+.+...
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~-------------------------------- 169 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG-------------------------------- 169 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC--------------------------------
Confidence 4679999999999999999999974 9999999999865443211100
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe-----cC---Ccch
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-----GP---LLYH 339 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~-----GP---LlYh 339 (397)
...++.++.+|+.++- . .+.||+|++.-.+....+...+|+.++++|||||.+|-- |. .++.
T Consensus 170 ------~~~~i~~~~~d~e~lp---~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p 239 (322)
T PRK15068 170 ------NDQRAHLLPLGIEQLP---A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP 239 (322)
T ss_pred ------CCCCeEEEeCCHHHCC---C-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc
Confidence 0012677888887652 2 578999998754444456789999999999999999841 10 0111
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 340 ~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.+.+..-....+..|.+++..+++++||+.++..
T Consensus 240 -~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~ 273 (322)
T PRK15068 240 -GDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIV 273 (322)
T ss_pred -hhHHhcCccceeCCCHHHHHHHHHHcCCceEEEE
Confidence 0111111111234599999999999999998754
No 23
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.54 E-value=1.4e-13 Score=134.42 Aligned_cols=134 Identities=17% Similarity=0.182 Sum_probs=94.7
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p 269 (397)
+.+|||+|||+|+++..||++|++|+|+|+|..|+..++-... . . .+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~---~-~----------------------~l------- 167 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAE---K-E----------------------NL------- 167 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---H-c----------------------CC-------
Confidence 3599999999999999999999999999999999986652221 0 0 00
Q ss_pred CCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 270 ~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
++.+..+|+.+.. ..++||+|++.+ |++ .+++..+++.++++|||||+++-+.+.- .+....
T Consensus 168 -------~v~~~~~D~~~~~----~~~~fD~I~~~~vl~~l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~---~~~~~~ 232 (287)
T PRK12335 168 -------NIRTGLYDINSAS----IQEEYDFILSTVVLMFLN-RERIPAIIKNMQEHTNPGGYNLIVCAMD---TEDYPC 232 (287)
T ss_pred -------ceEEEEechhccc----ccCCccEEEEcchhhhCC-HHHHHHHHHHHHHhcCCCcEEEEEEecc---cccCCC
Confidence 1455667765532 147899999764 444 3568899999999999999966432211 111111
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
++.....++.+||++++. +|++++-
T Consensus 233 ~~p~~~~~~~~el~~~~~--~~~i~~~ 257 (287)
T PRK12335 233 PMPFSFTFKEGELKDYYQ--DWEIVKY 257 (287)
T ss_pred CCCCCcccCHHHHHHHhC--CCEEEEE
Confidence 222356699999999995 4999883
No 24
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.52 E-value=1.4e-13 Score=128.64 Aligned_cols=134 Identities=18% Similarity=0.169 Sum_probs=88.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||.||.+..||++||+|+|+|.|...|...+-+.+. . .+.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~----~----------------------~l~----- 78 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEE----E----------------------GLD----- 78 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHH----T----------------------T-T-----
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhh----c----------------------Cce-----
Confidence 567999999999999999999999999999999998754433211 1 111
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
++....|+.+... .+.||+|++. .|++. +.+...++.|...|||||+.+-... ...++++
T Consensus 79 ---------i~~~~~Dl~~~~~----~~~yD~I~st~v~~fL~~-~~~~~i~~~m~~~~~pGG~~li~~~---~~~~d~p 141 (192)
T PF03848_consen 79 ---------IRTRVADLNDFDF----PEEYDFIVSTVVFMFLQR-ELRPQIIENMKAATKPGGYNLIVTF---METPDYP 141 (192)
T ss_dssp ---------EEEEE-BGCCBS-----TTTEEEEEEESSGGGS-G-GGHHHHHHHHHHTEEEEEEEEEEEE---B--SSS-
T ss_pred ---------eEEEEecchhccc----cCCcCEEEEEEEeccCCH-HHHHHHHHHHHhhcCCcEEEEEEEe---cccCCCC
Confidence 5566778766422 3689999863 47775 4688999999999999999774211 1111222
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.+....+-+...||++... ||+|++
T Consensus 142 ~~~~~~f~~~~~EL~~~y~--dW~il~ 166 (192)
T PF03848_consen 142 CPSPFPFLLKPGELREYYA--DWEILK 166 (192)
T ss_dssp -SS--S--B-TTHHHHHTT--TSEEEE
T ss_pred CCCCCCcccCHHHHHHHhC--CCeEEE
Confidence 2222356678899999984 799988
No 25
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.52 E-value=3e-13 Score=134.82 Aligned_cols=143 Identities=15% Similarity=0.068 Sum_probs=97.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|+++..++..|. .|+|+|.|..|+..++.+.+....
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~------------------------------- 169 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN------------------------------- 169 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-------------------------------
Confidence 567999999999999999999997 599999999998654432211000
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe-----cCCc---ch
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-----GPLL---YH 339 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~-----GPLl---Yh 339 (397)
..++.+..+++.++-. ...||+|++...+....+..++|+.++++|||||.+|-- |+.. ..
T Consensus 170 -------~~~v~~~~~~ie~lp~----~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p 238 (314)
T TIGR00452 170 -------DKRAILEPLGIEQLHE----LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP 238 (314)
T ss_pred -------CCCeEEEECCHHHCCC----CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCc
Confidence 0114455566655421 357999998865555567789999999999999999941 2110 00
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 340 ~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
. +.+.......+-.|.++++.+++++||+.++..
T Consensus 239 ~-~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 239 K-DRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred h-HHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 0 000000111234699999999999999998743
No 26
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.48 E-value=1.3e-12 Score=123.52 Aligned_cols=141 Identities=15% Similarity=0.084 Sum_probs=96.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
++.+|||+|||+|.++..|+++ +..++|+|+|..|+..|+..++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~------------------------------ 102 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY------------------------------ 102 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------------------
Confidence 4568999999999999999985 568999999999998776332110
Q ss_pred CCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCc-----
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLL----- 337 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLl----- 337 (397)
....++.++.+|+.++.. ..+|+|++.+-+. ...+...+++.++++|||||+++...+..
T Consensus 103 --------~~~~~v~~~~~d~~~~~~-----~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~ 169 (239)
T TIGR00740 103 --------HSEIPVEILCNDIRHVEI-----KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK 169 (239)
T ss_pred --------CCCCCeEEEECChhhCCC-----CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHh
Confidence 001236788999987532 3589888766332 22457899999999999999999653321
Q ss_pred -----ch----hhhccCCCC-----------CccccCCHHHHHHHHHhCCCEEEE
Q 015966 338 -----YH----FADLYGQED-----------EMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 338 -----Yh----~~d~~g~~~-----------~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.. |....|..+ .....+|.+|++.+++++||+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 170 INHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETHKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHH
Confidence 10 100001000 012357999999999999998543
No 27
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.48 E-value=6.6e-13 Score=123.44 Aligned_cols=146 Identities=15% Similarity=0.134 Sum_probs=101.8
Q ss_pred eEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCC
Q 015966 192 ACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p 269 (397)
+|||+|||+|.++..+|+. +..|+|+|+|..|+..++-.+...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~----------------------------------- 46 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL----------------------------------- 46 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-----------------------------------
Confidence 7999999999999999987 478999999999987665221100
Q ss_pred CCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCC
Q 015966 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDE 349 (397)
Q Consensus 270 ~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~ 349 (397)
....++++..+|+.+. .. .++||+|++...+....+...+|+.++++|||||+++-..+..-.+... +....
T Consensus 47 ---gl~~~i~~~~~d~~~~-~~---~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~~~ 118 (224)
T smart00828 47 ---GLQGRIRIFYRDSAKD-PF---PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAI-EHEET 118 (224)
T ss_pred ---CCCcceEEEecccccC-CC---CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccc-ccccc
Confidence 0112367788887553 11 3589999987655555667899999999999999999644321001110 00111
Q ss_pred ccccCCHHHHHHHHHhCCCEEEEEeecCCCC
Q 015966 350 MSIELSLEDVKRVALHYGFEFEKEKTIETTY 380 (397)
Q Consensus 350 ~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y 380 (397)
....++.+++.+++++.||++++...+...|
T Consensus 119 ~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~ 149 (224)
T smart00828 119 TSYLVTREEWAELLARNNLRVVEGVDASLEI 149 (224)
T ss_pred ccccCCHHHHHHHHHHCCCeEEEeEECcHhH
Confidence 1345799999999999999999865443333
No 28
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.47 E-value=6.7e-13 Score=126.81 Aligned_cols=140 Identities=19% Similarity=0.237 Sum_probs=96.7
Q ss_pred CCCeEEEecCCCChhHHHHHH----cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 189 SPPACLVPGAGLGRLALEISH----LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~----~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
++.+|||+|||+|.++..|++ .|..|+|+|+|..|+..|+-.+...
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~------------------------------ 105 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY------------------------------ 105 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------------------
Confidence 467999999999999998887 3679999999999998776322110
Q ss_pred CCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEEEEe--------
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWINL-------- 333 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~wIN~-------- 333 (397)
....++.++.+|+.++- ...+|+|++++ |++. .....++++|+++|||||.+|..
T Consensus 106 --------~~~~~v~~~~~d~~~~~-----~~~~D~vv~~~~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~ 171 (247)
T PRK15451 106 --------KAPTPVDVIEGDIRDIA-----IENASMVVLNFTLQFLEP-SERQALLDKIYQGLNPGGALVLSEKFSFEDA 171 (247)
T ss_pred --------CCCCCeEEEeCChhhCC-----CCCCCEEehhhHHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEEecCCCcc
Confidence 00123778899987752 14589988765 5553 44678999999999999999963
Q ss_pred --cCCcch----hhhccCCCC-----------CccccCCHHHHHHHHHhCCCEEEE
Q 015966 334 --GPLLYH----FADLYGQED-----------EMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 334 --GPLlYh----~~d~~g~~~-----------~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
+++++. +....|-.. .....+|.++..++|+++||+-+.
T Consensus 172 ~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 172 KVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSE 227 (247)
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHH
Confidence 332221 100011100 012236999999999999997543
No 29
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.47 E-value=1.3e-12 Score=130.35 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=99.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..|+++|+.|+|+|+|..||..++-..... ....+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~--------------------------~~~~~--- 194 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEA--------------------------LAALP--- 194 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------------------------ccccc---
Confidence 4679999999999999999999999999999999998776321100 00000
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeecc-CC-hhhHHHHHHHHHHhccCCcEEEEecCCcchhhh--c-
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI-DT-AHNIVEYIEIISRILKDGGVWINLGPLLYHFAD--L- 343 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFI-Dt-a~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d--~- 343 (397)
...++.+..+|+.++ .++||+|+++..+ .- ...+...++.+.+ |++||++|.+.|-.+.+.- .
T Consensus 195 -----~~~~~~f~~~Dl~~l------~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~ 262 (315)
T PLN02585 195 -----PEVLPKFEANDLESL------SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRI 262 (315)
T ss_pred -----cccceEEEEcchhhc------CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHH
Confidence 001256777886543 3789999876432 21 1234456666664 5789999998776443321 1
Q ss_pred ---cCCCCC--ccccCCHHHHHHHHHhCCCEEEEEeecCCC
Q 015966 344 ---YGQEDE--MSIELSLEDVKRVALHYGFEFEKEKTIETT 379 (397)
Q Consensus 344 ---~g~~~~--~~ieLS~EEl~~ll~~~GFeii~e~~i~~~ 379 (397)
+.++.. ..+..+.+|+++++++.||+++..+.+.+.
T Consensus 263 g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~~~~ 303 (315)
T PLN02585 263 GELFPGPSKATRAYLHAEADVERALKKAGWKVARREMTATQ 303 (315)
T ss_pred HhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEEeecc
Confidence 111111 123458999999999999999886654443
No 30
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.47 E-value=9.5e-13 Score=127.34 Aligned_cols=142 Identities=12% Similarity=0.119 Sum_probs=97.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..||+. |..|+|+|+|..|+..|+-... .
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~---~------------------------------- 97 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS---D------------------------------- 97 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcC---c-------------------------------
Confidence 6679999999999999999875 7899999999999976652110 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccC-ChhhHHHHHHHHHHhccCCcEEEEecCCcch---hhh
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID-TAHNIVEYIEIISRILKDGGVWINLGPLLYH---FAD 342 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FID-ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh---~~d 342 (397)
..++.+..+|+.+.. ..+++||+|++.. ++. ...+...+|+.++++|||||+++-..+..-. +..
T Consensus 98 -------~~~i~~~~~D~~~~~---~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~ 167 (263)
T PTZ00098 98 -------KNKIEFEANDILKKD---FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDE 167 (263)
T ss_pred -------CCceEEEECCcccCC---CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHH
Confidence 012677888887642 2357899999853 222 2346889999999999999999954321100 000
Q ss_pred ccC--CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 343 LYG--QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 343 ~~g--~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
... ......-.++.+++.++++++||+.+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 168 EFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 000 00000113689999999999999988754
No 31
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.46 E-value=2.9e-12 Score=119.47 Aligned_cols=159 Identities=16% Similarity=0.264 Sum_probs=107.9
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
..++++|.+. ..+..+|||+|||+|.++..|++.|..|+|+|+|..|+..++-.+...
T Consensus 43 ~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~----------------- 100 (219)
T TIGR02021 43 RKLLDWLPKD-----PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGR----------------- 100 (219)
T ss_pred HHHHHHHhcC-----CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----------------
Confidence 3466666541 125679999999999999999999999999999999998776222100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeecc--CChhhHHHHHHHHHHhccCCcE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI--DTAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFI--Dta~Ni~~yi~~I~~~LKPGG~ 329 (397)
....++.+..+|+.++ .++||+|+.++.+ .+..++...++.+++++|+|++
T Consensus 101 ---------------------~~~~~i~~~~~d~~~~------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~ 153 (219)
T TIGR02021 101 ---------------------DVAGNVEFEVNDLLSL------CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVI 153 (219)
T ss_pred ---------------------CCCCceEEEECChhhC------CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEE
Confidence 0011367788887653 2689999886533 2345688899999999997766
Q ss_pred EEEecCCcchh------hhccCC--CCCccccCCHHHHHHHHHhCCCEEEEEeecCCCC
Q 015966 330 WINLGPLLYHF------ADLYGQ--EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 380 (397)
Q Consensus 330 wIN~GPLlYh~------~d~~g~--~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y 380 (397)
+. +.|-.+.+ ...... .......++.++++.+++++||++++.+....+|
T Consensus 154 i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~ 211 (219)
T TIGR02021 154 FT-FAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVSTGF 211 (219)
T ss_pred EE-ECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccccc
Confidence 55 44422111 010111 1111234799999999999999999887555554
No 32
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.44 E-value=2.7e-12 Score=125.59 Aligned_cols=155 Identities=22% Similarity=0.245 Sum_probs=97.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.++.+.+.+. ..++.+|||+|||-|.++..+|++ |..|+|+.+|......++- ...+.
T Consensus 50 k~~~~~~~~~---l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~---~~~~~--------------- 108 (273)
T PF02353_consen 50 KLDLLCEKLG---LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARE---RIREA--------------- 108 (273)
T ss_dssp HHHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHH---HHHCS---------------
T ss_pred HHHHHHHHhC---CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHH---HHHhc---------------
Confidence 5566655543 237889999999999999999999 9999999999999876652 22111
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh--hhHHHHHHHHHHhccCCcEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~w 330 (397)
.+.+.+.+..+|++++. .+||.||+.=-+... .|...||+.|+++|||||++
T Consensus 109 --------------------gl~~~v~v~~~D~~~~~------~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~ 162 (273)
T PF02353_consen 109 --------------------GLEDRVEVRLQDYRDLP------GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRL 162 (273)
T ss_dssp --------------------TSSSTEEEEES-GGG---------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEE
T ss_pred --------------------CCCCceEEEEeeccccC------CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEE
Confidence 11234778889988752 489999998544433 78999999999999999999
Q ss_pred EE--ec-C-CcchhhhccC-------CCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 331 IN--LG-P-LLYHFADLYG-------QEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 331 IN--~G-P-LlYh~~d~~g-------~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
+. ++ + -.++...... ..| .+.-.|.+++...+++.||++......
T Consensus 163 ~lq~i~~~~~~~~~~~~~~~~~i~kyiFP-gg~lps~~~~~~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 163 VLQTITHRDPPYHAERRSSSDFIRKYIFP-GGYLPSLSEILRAAEDAGLEVEDVENL 218 (273)
T ss_dssp EEEEEEE--HHHHHCTTCCCHHHHHHTST-TS---BHHHHHHHHHHTT-EEEEEEE-
T ss_pred EEEecccccccchhhcCCCceEEEEeeCC-CCCCCCHHHHHHHHhcCCEEEEEEEEc
Confidence 83 11 1 1122110000 011 123458999999999999999886543
No 33
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.43 E-value=9.5e-13 Score=115.95 Aligned_cols=103 Identities=21% Similarity=0.309 Sum_probs=81.6
Q ss_pred CCCeEEEecCCCChhHHHHHH-c--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISH-L--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~-~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|+++..|++ . +.+++|+|+|..|+..|+..+... .
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~----------------------------~-- 52 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL----------------------------G-- 52 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT----------------------------T--
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc----------------------------c--
Confidence 578999999999999999994 4 679999999999998877433211 0
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
. .++.+.++|+.++... . .+.||+|++...+....+....++.+.++||+||++|-
T Consensus 53 --------~-~ni~~~~~d~~~l~~~-~-~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 53 --------L-DNIEFIQGDIEDLPQE-L-EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp --------S-TTEEEEESBTTCGCGC-S-STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEE
T ss_pred --------c-cccceEEeehhccccc-c-CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEE
Confidence 0 1378999999985321 1 17999999987777777788999999999999999994
No 34
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.42 E-value=3.3e-12 Score=128.71 Aligned_cols=141 Identities=20% Similarity=0.094 Sum_probs=100.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..+++. +..|+|+|.|..|+..++-.. .
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~-----------------------------~----- 158 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----------------------------P----- 158 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhh-----------------------------h-----
Confidence 4679999999999999999875 578999999999997665110 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchh--hhcc
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHF--ADLY 344 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~--~d~~ 344 (397)
..++.++.+|+.++- ...+.||+|+++..+....+....|++++++|||||.++-++|..-.+ ....
T Consensus 159 --------~~~i~~i~gD~e~lp---~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~ 227 (340)
T PLN02490 159 --------LKECKIIEGDAEDLP---FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFF 227 (340)
T ss_pred --------ccCCeEEeccHHhCC---CCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHh
Confidence 012566888887642 235789999988766655667789999999999999998666542111 1000
Q ss_pred CCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 345 GQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 345 g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
. +......+.+|+.++++++||+.++.+.+
T Consensus 228 ~--~~~~~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 228 A--DVWMLFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred h--hhhccCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 0 00011358999999999999998875543
No 35
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.41 E-value=1.2e-11 Score=114.54 Aligned_cols=146 Identities=21% Similarity=0.253 Sum_probs=101.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..+++++ ..++|+|+|..|+..++-.....
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~------------------------------- 99 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL------------------------------- 99 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-------------------------------
Confidence 45799999999999999999987 78999999999987665211000
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEec---CCcch---
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG---PLLYH--- 339 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~G---PLlYh--- 339 (397)
....++.+..+|+.+.. ...+.||+|+..+.+....++...++.+.++|||||++|-+. |....
T Consensus 100 -------~~~~~~~~~~~d~~~~~---~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~ 169 (239)
T PRK00216 100 -------GLSGNVEFVQGDAEALP---FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKK 169 (239)
T ss_pred -------ccccCeEEEecccccCC---CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHH
Confidence 00123677888887642 235789999988777777778899999999999999998532 11100
Q ss_pred ----h--------hhccCCCCC--------ccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 340 ----F--------ADLYGQEDE--------MSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 340 ----~--------~d~~g~~~~--------~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
+ ....+.... ..-.++.+++..+++++||++++...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 225 (239)
T PRK00216 170 AYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRN 225 (239)
T ss_pred HHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeee
Confidence 0 000000000 01135889999999999999988653
No 36
>PRK05785 hypothetical protein; Provisional
Probab=99.39 E-value=3.3e-12 Score=121.16 Aligned_cols=106 Identities=19% Similarity=0.318 Sum_probs=81.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
+++.+....+ ++.+|||+|||||.++..|+++ |..|+|+|+|..||..|+- +
T Consensus 41 ~~~~l~~~~~-----~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~-------~--------------- 93 (226)
T PRK05785 41 LVKTILKYCG-----RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLV-------A--------------- 93 (226)
T ss_pred HHHHHHHhcC-----CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHh-------c---------------
Confidence 5555555433 3569999999999999999999 6899999999999976540 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
...+.+|+.++ |..+++||+|++.|-|....|+...+++++++|||++.++-
T Consensus 94 -------------------------~~~~~~d~~~l---p~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~~ile 145 (226)
T PRK05785 94 -------------------------DDKVVGSFEAL---PFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQVGFIA 145 (226)
T ss_pred -------------------------cceEEechhhC---CCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCceEEEE
Confidence 01245677664 23468999999998888778899999999999999655664
Q ss_pred ec
Q 015966 333 LG 334 (397)
Q Consensus 333 ~G 334 (397)
++
T Consensus 146 ~~ 147 (226)
T PRK05785 146 MG 147 (226)
T ss_pred eC
Confidence 43
No 37
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.39 E-value=7.6e-12 Score=123.26 Aligned_cols=140 Identities=15% Similarity=0.114 Sum_probs=86.2
Q ss_pred HHHHHHHHHHh--cccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCH
Q 015966 147 KVRCIIRNIVR--DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSY 221 (397)
Q Consensus 147 kv~stL~q~~R--DWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~ 221 (397)
+=.....++++ +|-. -+.|.+ .+....+.|.+.++ ++.+||++|||+|+.+..|++. |+.|+|+|+|.
T Consensus 26 ~G~~lf~~i~~~peYy~-tr~E~~-il~~~~~~ia~~~~-----~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~ 98 (301)
T TIGR03438 26 RGSELFEQICELPEYYP-TRTEAA-ILERHADEIAAATG-----AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISA 98 (301)
T ss_pred hHHHHHHHHHCCCcccc-HHHHHH-HHHHHHHHHHHhhC-----CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCH
Confidence 33445666666 4442 233332 22333344444443 4568999999999999999888 69999999999
Q ss_pred HHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCC-CCccE
Q 015966 222 YMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQV-GAWDA 300 (397)
Q Consensus 222 ~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~-~~fD~ 300 (397)
.||..++--+. . .+|.+ .+..++|||.+....+... ....+
T Consensus 99 ~mL~~a~~~l~---~--------------------------~~p~~---------~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 99 DALKESAAALA---A--------------------------DYPQL---------EVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred HHHHHHHHHHH---h--------------------------hCCCc---------eEEEEEEcccchhhhhcccccCCeE
Confidence 99987652211 0 01111 2567889998743221110 11222
Q ss_pred EEE---eeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 301 VVT---CFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 301 VvT---~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
|+. .+..-...+....|+.|+++|||||++|
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 322 1232345668899999999999999998
No 38
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.38 E-value=1.6e-12 Score=124.93 Aligned_cols=190 Identities=16% Similarity=0.145 Sum_probs=119.5
Q ss_pred CCCCchhhHHHHHHHHHHhcccccChhHHhhch-HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEE
Q 015966 139 NVPLADVDKVRCIIRNIVRDWAAEGKTERDQCY-KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGN 217 (397)
Q Consensus 139 ~~~~~d~dkv~stL~q~~RDWS~eG~~ER~~~y-~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~Gn 217 (397)
.++..+++|-. .|++...|+ +|+-..--.. +--++++.+.........+.+|||.|||-|-|+.-+|++|+.|+|+
T Consensus 11 ~id~~e~~~F~-~la~~wwd~--~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~Vtgi 87 (243)
T COG2227 11 NVDYKELDKFE-ALASRWWDP--EGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGI 87 (243)
T ss_pred cCCHHHHHHHH-HHHhhhcCC--CCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEe
Confidence 34444444443 555555444 4433321111 1123444444432111378999999999999999999999999999
Q ss_pred eCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCC
Q 015966 218 EFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGA 297 (397)
Q Consensus 218 D~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~ 297 (397)
|+|..|+..|+ .++.+. ++. +.+.++...++.. ..++
T Consensus 88 D~se~~I~~Ak---~ha~e~-----------------------gv~--------------i~y~~~~~edl~~---~~~~ 124 (243)
T COG2227 88 DASEKPIEVAK---LHALES-----------------------GVN--------------IDYRQATVEDLAS---AGGQ 124 (243)
T ss_pred cCChHHHHHHH---Hhhhhc-----------------------ccc--------------ccchhhhHHHHHh---cCCC
Confidence 99999998877 122110 111 3355555555543 2389
Q ss_pred ccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe----cCCcchh---------hhccCCCCCccccCCHHHHHHHHH
Q 015966 298 WDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL----GPLLYHF---------ADLYGQEDEMSIELSLEDVKRVAL 364 (397)
Q Consensus 298 fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~----GPLlYh~---------~d~~g~~~~~~ieLS~EEl~~ll~ 364 (397)
||+|+|.=.|...+|...+++...++|||||+.+-- -+.-|-. ...+.+.-...--+-.+|+...+.
T Consensus 125 FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~ 204 (243)
T COG2227 125 FDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLL 204 (243)
T ss_pred ccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcc
Confidence 999999888888888889999999999999999831 1111111 000110000112357899999999
Q ss_pred hCCCEEEEEe
Q 015966 365 HYGFEFEKEK 374 (397)
Q Consensus 365 ~~GFeii~e~ 374 (397)
..||++....
T Consensus 205 ~~~~~~~~~~ 214 (243)
T COG2227 205 GANLKIIDRK 214 (243)
T ss_pred cCCceEEeec
Confidence 9899988753
No 39
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.37 E-value=1.1e-11 Score=128.27 Aligned_cols=141 Identities=13% Similarity=0.045 Sum_probs=98.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..||+. |..|+|+|+|..|+..|+.-. .
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~---~-------------------------------- 310 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERA---I-------------------------------- 310 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHh---h--------------------------------
Confidence 5679999999999999999986 789999999999998765110 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCc------chhh
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL------YHFA 341 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLl------Yh~~ 341 (397)
....++.+..+|+.+.. ...++||+|++..-+....+...+++.++++|||||.++-..+.. -.+.
T Consensus 311 -----~~~~~v~~~~~d~~~~~---~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 382 (475)
T PLN02336 311 -----GRKCSVEFEVADCTKKT---YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFA 382 (475)
T ss_pred -----cCCCceEEEEcCcccCC---CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHH
Confidence 00113678888987642 224789999987544444567799999999999999998421110 0000
Q ss_pred hccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 342 DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 342 d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.... .. .....+.+++.++++++||+++..+
T Consensus 383 ~~~~-~~-g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 383 EYIK-QR-GYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred HHHH-hc-CCCCCCHHHHHHHHHHCCCeeeeee
Confidence 0000 00 0124689999999999999998643
No 40
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.37 E-value=6.1e-12 Score=120.92 Aligned_cols=141 Identities=16% Similarity=0.106 Sum_probs=99.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..++++ |. .|+|+|+|..|+..|+...... . +
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~--------------------------g--~- 127 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA--------------------------G--Y- 127 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc--------------------------C--C-
Confidence 6779999999999999888775 54 6999999999998776322100 0 0
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecC-----Ccchh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP-----LLYHF 340 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GP-----LlYh~ 340 (397)
.++.+..+|+.++- ..++.||+|++...+....+...+++.++++|||||+++-.+. +.-..
T Consensus 128 ----------~~v~~~~~d~~~l~---~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~ 194 (272)
T PRK11873 128 ----------TNVEFRLGEIEALP---VADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEI 194 (272)
T ss_pred ----------CCEEEEEcchhhCC---CCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHH
Confidence 12567888887642 2356899999887666666778999999999999999985322 11000
Q ss_pred hh---ccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 341 AD---LYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 341 ~d---~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
.. ..+.. ..-.++.+++.+++++.||..++.
T Consensus 195 ~~~~~~~~~~--~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 195 RNDAELYAGC--VAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred HHhHHHHhcc--ccCCCCHHHHHHHHHHCCCCceEE
Confidence 00 00000 012368899999999999998764
No 41
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.35 E-value=4.3e-11 Score=110.88 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=101.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..+++.|..++|+|+|..|+..++..+... .+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~--------------------------~~------ 92 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKD--------------------------PL------ 92 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHc--------------------------CC------
Confidence 4679999999999999999999999999999999987665211100 00
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC----cchhh---
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL----LYHFA--- 341 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL----lYh~~--- 341 (397)
.++.+..+|+.++-. ...+.||+|++...+....+....++.+.++|+|||.++-..+. .+...
T Consensus 93 -------~~~~~~~~d~~~~~~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~ 163 (224)
T TIGR01983 93 -------LKIEYRCTSVEDLAE--KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVG 163 (224)
T ss_pred -------CceEEEeCCHHHhhc--CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHh
Confidence 025667778766532 12478999998876666677889999999999999998742221 00000
Q ss_pred h--ccCC----CCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 342 D--LYGQ----EDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 342 d--~~g~----~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
. ..+. .....-.++.+++.+++++.||++++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 164 AEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVKG 203 (224)
T ss_pred hhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeeee
Confidence 0 0000 00011235889999999999999988653
No 42
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.34 E-value=6.4e-11 Score=110.01 Aligned_cols=142 Identities=15% Similarity=0.274 Sum_probs=95.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
+..+|||+|||+|.++..|+++|..|+|+|+|..|+..|+-.....
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~---------------------------------- 108 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEA---------------------------------- 108 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 4679999999999999999999999999999999998776222100
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeecc-C-ChhhHHHHHHHHHHhccCCcEEEEecCC---cchhhhc
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI-D-TAHNIVEYIEIISRILKDGGVWINLGPL---LYHFADL 343 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFI-D-ta~Ni~~yi~~I~~~LKPGG~wIN~GPL---lYh~~d~ 343 (397)
....++.+..+|+.. ..++||+|++...+ . ..+++...++.+.+.++ ||.+|.+.|- ...+...
T Consensus 109 ----~~~~~i~~~~~d~~~------~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~~~~~~~~~~~~~~l 177 (230)
T PRK07580 109 ----GLAGNITFEVGDLES------LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTR-GSLIFTFAPYTPLLALLHWI 177 (230)
T ss_pred ----CCccCcEEEEcCchh------ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEEECCccHHHHHHHHh
Confidence 001236778888432 14789999987543 2 34567788888888775 4555654332 1111000
Q ss_pred ---c-C-CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 344 ---Y-G-QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 344 ---~-g-~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
. + ........++.+++..++++.||++.+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 178 GGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred ccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 0 0 011113457999999999999999988654
No 43
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.34 E-value=7.9e-12 Score=115.26 Aligned_cols=137 Identities=19% Similarity=0.172 Sum_probs=95.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
.+.+|||+|||+|.++..|++.|. .++|+|+|..|+..++-.+ +
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~---------------------------------~- 79 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL---------------------------------S- 79 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc---------------------------------C-
Confidence 457899999999999999999975 4699999999986554100 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
.++.++.+|+.+.- ...++||+|++.+.+.-..+...+++.+.++|||||+++-..|..-.+......
T Consensus 80 ---------~~~~~~~~d~~~~~---~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~ 147 (240)
T TIGR02072 80 ---------ENVQFICGDAEKLP---LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQS 147 (240)
T ss_pred ---------CCCeEEecchhhCC---CCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHH
Confidence 12566778877642 235789999998776666678899999999999999999644332221110000
Q ss_pred -CCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 347 -EDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 347 -~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.....-..+.+++.+++.+. |+...
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~-f~~~~ 173 (240)
T TIGR02072 148 FGQHGLRYLSLDELKALLKNS-FELLT 173 (240)
T ss_pred HHHhccCCCCHHHHHHHHHHh-cCCcE
Confidence 00001235889999999887 87665
No 44
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.33 E-value=8.1e-11 Score=110.23 Aligned_cols=156 Identities=13% Similarity=0.100 Sum_probs=105.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
-++++...... .++.+||++|||+|.++..+++.|..|+|+|+|..|+..++......
T Consensus 36 ~~~~l~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~------------------- 93 (233)
T PRK05134 36 RLNYIREHAGG---LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALES------------------- 93 (233)
T ss_pred HHHHHHHhccC---CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHc-------------------
Confidence 35566655532 25679999999999999999999999999999999987665211100
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
. ..+.+..+|+.++.. ...+.||+|++.+.+....+....++.+.++|+|||+++-.
T Consensus 94 -------~--------------~~~~~~~~~~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 94 -------G--------------LKIDYRQTTAEELAA--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred -------C--------------CceEEEecCHHHhhh--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 0 013455666655421 12478999998877776677889999999999999998842
Q ss_pred cCC--cchh-----------hhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 334 GPL--LYHF-----------ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 334 GPL--lYh~-----------~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.+- ...+ ...........-.++.+++..++++.||+++...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 151 TLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred ecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 221 0000 0000000001224689999999999999998754
No 45
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.33 E-value=3.6e-11 Score=108.91 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=90.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+||++|||+|.++..++++|..|+|+|+|..|+..++..+.. + .
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~----~----------------------~------- 65 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKL----N----------------------N------- 65 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHH----c----------------------C-------
Confidence 456899999999999999999999999999999999876632210 0 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-cc--CC------------------hhhHHHHHHHHHHhccCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FI--DT------------------AHNIVEYIEIISRILKDG 327 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FI--Dt------------------a~Ni~~yi~~I~~~LKPG 327 (397)
.++.+..+|+.+.. .++||+|+++- |+ +. ..-+.++++.+.++||||
T Consensus 66 -------~~~~~~~~d~~~~~-----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g 133 (179)
T TIGR00537 66 -------VGLDVVMTDLFKGV-----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG 133 (179)
T ss_pred -------CceEEEEccccccc-----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC
Confidence 01456778876642 25899999862 22 11 111467899999999999
Q ss_pred cEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 328 G~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
|.++-+.+ ..-...++..++++.||+.+...
T Consensus 134 G~~~~~~~----------------~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 134 GRVQLIQS----------------SLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CEEEEEEe----------------ccCChHHHHHHHHhCCCeEEEEE
Confidence 99884211 11236888999999999987743
No 46
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.33 E-value=2.8e-11 Score=123.54 Aligned_cols=137 Identities=18% Similarity=0.185 Sum_probs=94.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|++ |..|+|+|+|..|+..++-... .+
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~----------------------------~l----- 213 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA----------------------------GL----- 213 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----------------------------cC-----
Confidence 5679999999999999999986 8899999999999987652110 00
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC--hhhHHHHHHHHHHhccCCcEEEE--ecCC-cchhhh
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWIN--LGPL-LYHFAD 342 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~yi~~I~~~LKPGG~wIN--~GPL-lYh~~d 342 (397)
.+.+..+|+.++ .++||+|++...+.. ..++..+++.++++|||||+++. ++.- .+...+
T Consensus 214 ---------~v~~~~~D~~~l------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~ 278 (383)
T PRK11705 214 ---------PVEIRLQDYRDL------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVD 278 (383)
T ss_pred ---------eEEEEECchhhc------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCC
Confidence 145566776654 368999998754432 35678999999999999999985 2211 110000
Q ss_pred cc-C--CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 343 LY-G--QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 343 ~~-g--~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
.+ . ..| ...-.+.+++..+++. ||++.....
T Consensus 279 ~~i~~yifp-~g~lps~~~i~~~~~~-~~~v~d~~~ 312 (383)
T PRK11705 279 PWINKYIFP-NGCLPSVRQIAQASEG-LFVMEDWHN 312 (383)
T ss_pred CCceeeecC-CCcCCCHHHHHHHHHC-CcEEEEEec
Confidence 00 0 011 1234588999998775 899887543
No 47
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.31 E-value=1e-11 Score=120.06 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=72.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 263 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-----Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~ 263 (397)
+..+|||+|||+|.++..|++. |..|+|+|+|..|+..|+-.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~--------------------------------- 131 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR--------------------------------- 131 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh---------------------------------
Confidence 4568999999999999999875 34789999999999765410
Q ss_pred cCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcch
Q 015966 264 IPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYH 339 (397)
Q Consensus 264 iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh 339 (397)
.| ++.+..+|..++ |..+++||+|++.|.- ..+++++++|||||++|.+.|.-.|
T Consensus 132 ~~-----------~~~~~~~d~~~l---p~~~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 132 YP-----------QVTFCVASSHRL---PFADQSLDAIIRIYAP-------CKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred CC-----------CCeEEEeecccC---CCcCCceeEEEEecCC-------CCHHHHHhhccCCCEEEEEeCCCcc
Confidence 00 156677887664 2346799999986531 2357899999999999987665433
No 48
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.30 E-value=6.7e-13 Score=108.33 Aligned_cols=97 Identities=23% Similarity=0.213 Sum_probs=56.3
Q ss_pred EEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCC
Q 015966 194 LVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 271 (397)
Q Consensus 194 LvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~ 271 (397)
||+|||+|+++..|+.. +.+++|+|+|..|+..++.-+... ....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~-------------------------~~~~-------- 47 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL-------------------------GNDN-------- 47 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC-------------------------T-----------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-------------------------CCcc--------
Confidence 79999999999999999 889999999999984332111000 0000
Q ss_pred CCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEE
Q 015966 272 AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 272 ~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
...+.+...|..+.. ..++||+|++...+...+++.++++.++++|||||++
T Consensus 48 ---~~~~~~~~~~~~~~~----~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 48 ---FERLRFDVLDLFDYD----PPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---EEEEE--SSS---CC----C----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred ---eeEEEeecCChhhcc----cccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 001222223322211 1269999999987777788999999999999999985
No 49
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.29 E-value=5.7e-11 Score=109.31 Aligned_cols=126 Identities=12% Similarity=0.148 Sum_probs=88.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..+|..+ ..|+|+|.|..|+..++...+.. .
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~----------------------------~--- 90 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL----------------------------G--- 90 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh----------------------------C---
Confidence 36799999999999999999775 57999999999997665322100 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
. .++.++.+|+.++ . ..++||+|++.. ..++.++++.++++|||||+++- ++-
T Consensus 91 -------~-~~i~~i~~d~~~~-~---~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi-----~~~------ 143 (181)
T TIGR00138 91 -------L-NNVEIVNGRAEDF-Q---HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLA-----YKG------ 143 (181)
T ss_pred -------C-CCeEEEecchhhc-c---ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEE-----EcC------
Confidence 0 1267899998775 2 247899998755 24567889999999999999993 221
Q ss_pred CCCccccCCHHHHHHHHH---hCCCEEEEEeecCC
Q 015966 347 EDEMSIELSLEDVKRVAL---HYGFEFEKEKTIET 378 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~---~~GFeii~e~~i~~ 378 (397)
.-...++..+.+ ..||+.++...+..
T Consensus 144 ------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181)
T TIGR00138 144 ------KKYLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181)
T ss_pred ------CCcHHHHHHHHHhhhhcCceEeeccccCC
Confidence 112344444444 48999988654433
No 50
>PRK08317 hypothetical protein; Provisional
Probab=99.29 E-value=8.3e-11 Score=108.06 Aligned_cols=140 Identities=17% Similarity=0.125 Sum_probs=97.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..+|++. -.|+|+|+|..|+..++-....
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-------------------------------- 66 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-------------------------------- 66 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--------------------------------
Confidence 56799999999999999999874 5899999999998766521000
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC----cchhh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL----LYHFA 341 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL----lYh~~ 341 (397)
...++.+..+|+.++- ...++||+|++...+....+...+++.++++|||||.++-..|- .+...
T Consensus 67 --------~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 135 (241)
T PRK08317 67 --------LGPNVEFVRGDADGLP---FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSG 135 (241)
T ss_pred --------CCCceEEEecccccCC---CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCC
Confidence 0112667778876532 23578999999887777777889999999999999999864431 11100
Q ss_pred hc---------cCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 342 DL---------YGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 342 d~---------~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
+. +... ..-..+..++.+++++.||+.+..
T Consensus 136 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~aGf~~~~~ 174 (241)
T PRK08317 136 DRALMRKILNFWSDH--FADPWLGRRLPGLFREAGLTDIEV 174 (241)
T ss_pred ChHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHcCCCceeE
Confidence 00 0000 001234578999999999987763
No 51
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.28 E-value=5.7e-11 Score=116.96 Aligned_cols=155 Identities=18% Similarity=0.253 Sum_probs=108.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.++.+.+.+.. .++.+|||+|||-|.++..+|++ |..|+|+++|..|+..++-.. ..
T Consensus 60 k~~~~~~kl~L---~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~---~~---------------- 117 (283)
T COG2230 60 KLDLILEKLGL---KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRI---AA---------------- 117 (283)
T ss_pred HHHHHHHhcCC---CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHH---HH----------------
Confidence 56666665543 37899999999999999999999 999999999999997665211 10
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~w 330 (397)
.....++.+...|..++- +.||.||+.=-+. ..+|..+||+.++++|+|||++
T Consensus 118 -------------------~gl~~~v~v~l~d~rd~~------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ 172 (283)
T COG2230 118 -------------------RGLEDNVEVRLQDYRDFE------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRM 172 (283)
T ss_pred -------------------cCCCcccEEEeccccccc------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceE
Confidence 011234677778877763 5599999972111 3367899999999999999999
Q ss_pred EE--e-cCCc-c-hhh---hccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecC
Q 015966 331 IN--L-GPLL-Y-HFA---DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIE 377 (397)
Q Consensus 331 IN--~-GPLl-Y-h~~---d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~ 377 (397)
++ + +|=. + .+. ..+ ..| ...-.|..++.+...+.||.+...+...
T Consensus 173 llh~I~~~~~~~~~~~~~i~~y-iFP-gG~lPs~~~i~~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 173 LLHSITGPDQEFRRFPDFIDKY-IFP-GGELPSISEILELASEAGFVVLDVESLR 225 (283)
T ss_pred EEEEecCCCcccccchHHHHHh-CCC-CCcCCCHHHHHHHHHhcCcEEehHhhhc
Confidence 96 2 2210 0 110 000 011 1334589999999999999999865433
No 52
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.28 E-value=8.4e-11 Score=112.69 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=89.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.++.|.+... ++.+|||+|||+|.++..+++.|.. |+|+|+|..|+..|+-.+.. +
T Consensus 109 ~l~~l~~~~~-----~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~----~-------------- 165 (250)
T PRK00517 109 CLEALEKLVL-----PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL----N-------------- 165 (250)
T ss_pred HHHHHHhhcC-----CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 4555554432 5679999999999999999999986 99999999999876622110 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.+. ..+.+..+ +.+||+|+++.. +..+..+++.+.++|||||++|-
T Consensus 166 --------~~~------------~~~~~~~~-----------~~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~lil 211 (250)
T PRK00517 166 --------GVE------------LNVYLPQG-----------DLKADVIVANIL---ANPLLELAPDLARLLKPGGRLIL 211 (250)
T ss_pred --------CCC------------ceEEEccC-----------CCCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcEEEE
Confidence 000 00111111 126999987643 34467889999999999999996
Q ss_pred ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 333 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 333 ~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.|.+ .-..+++.+.+++.||+++...
T Consensus 212 sgi~----------------~~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 212 SGIL----------------EEQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred EECc----------------HhhHHHHHHHHHHCCCEEEEEE
Confidence 4432 2246789999999999988743
No 53
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.28 E-value=3e-11 Score=117.39 Aligned_cols=189 Identities=20% Similarity=0.232 Sum_probs=116.9
Q ss_pred chhhHHHHHHHHHHh-cccccChhHHhh-----chHHHHHHHHhhCCCCCC----CCCCeEEEecCCCChhHHHHHHcCC
Q 015966 143 ADVDKVRCIIRNIVR-DWAAEGKTERDQ-----CYKPILEELDALFPNRSK----ESPPACLVPGAGLGRLALEISHLGF 212 (397)
Q Consensus 143 ~d~dkv~stL~q~~R-DWS~eG~~ER~~-----~y~pIl~~L~~~~p~~~~----~~~~rVLvPGCGlGRLa~eLA~~Gf 212 (397)
.|.+.|+ .++-++- .|..+|-.+--- -.+-|.+-+.+++++... --+.+|||.|||+|-|+.-||+.|+
T Consensus 34 i~~~eV~-~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga 112 (282)
T KOG1270|consen 34 IDVDEVK-KFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA 112 (282)
T ss_pred ccHHHHH-HHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC
Confidence 3345566 4444444 556666533211 112334444444433210 1246899999999999999999999
Q ss_pred eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCC
Q 015966 213 ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDP 292 (397)
Q Consensus 213 ~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~ 292 (397)
+|+|+|.|..|+.+|+-- .+.. ++. +......+++...|..++
T Consensus 113 ~V~GID~s~~~V~vA~~h--~~~d------------------------P~~-------~~~~~y~l~~~~~~~E~~---- 155 (282)
T KOG1270|consen 113 QVTGIDASDDMVEVANEH--KKMD------------------------PVL-------EGAIAYRLEYEDTDVEGL---- 155 (282)
T ss_pred eeEeecccHHHHHHHHHh--hhcC------------------------chh-------ccccceeeehhhcchhhc----
Confidence 999999999999998821 1100 100 001112355666664443
Q ss_pred CCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE----E------ecCCcchhhhccCCCCC--c--cccCCHHH
Q 015966 293 SQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI----N------LGPLLYHFADLYGQEDE--M--SIELSLED 358 (397)
Q Consensus 293 ~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI----N------~GPLlYh~~d~~g~~~~--~--~ieLS~EE 358 (397)
.+.||+||+.--+....|+.++++...++|||||.+. | +|.+++ .+.....-|. . .-.++++|
T Consensus 156 --~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~-~E~vl~ivp~Gth~~ekfi~p~e 232 (282)
T KOG1270|consen 156 --TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFL-AEIVLRIVPKGTHTWEKFINPEE 232 (282)
T ss_pred --ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccH-HHHHHHhcCCCCcCHHHcCCHHH
Confidence 3569999998777767778899999999999999876 2 222222 1111000010 0 12479999
Q ss_pred HHHHHHhCCCEEEE
Q 015966 359 VKRVALHYGFEFEK 372 (397)
Q Consensus 359 l~~ll~~~GFeii~ 372 (397)
+.++++..|+.+..
T Consensus 233 ~~~~l~~~~~~v~~ 246 (282)
T KOG1270|consen 233 LTSILNANGAQVND 246 (282)
T ss_pred HHHHHHhcCcchhh
Confidence 99999999988765
No 54
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.28 E-value=8.6e-11 Score=115.17 Aligned_cols=132 Identities=22% Similarity=0.174 Sum_probs=92.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.++.|.++.. ++.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..... +.
T Consensus 149 ~l~~l~~~~~-----~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~----n~------------- 206 (288)
T TIGR00406 149 CLEWLEDLDL-----KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL----NQ------------- 206 (288)
T ss_pred HHHHHHhhcC-----CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----cC-------------
Confidence 4455555432 457999999999999999999987 799999999999877632210 00
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
+ ...+....++.... ..++||+|+++.. +..+.++++.+.++|||||++|-
T Consensus 207 ---------~------------~~~~~~~~~~~~~~-----~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 207 ---------V------------SDRLQVKLIYLEQP-----IEGKADVIVANIL---AEVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred ---------C------------CcceEEEecccccc-----cCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcEEEE
Confidence 0 01133444442221 2468999998764 34567899999999999999997
Q ss_pred ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 333 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 333 ~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
.|.+ .-..+++++.+++. |++++.
T Consensus 258 sgi~----------------~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 258 SGIL----------------ETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred EeCc----------------HhHHHHHHHHHHcc-CceeeE
Confidence 6643 12357888888775 988764
No 55
>PRK06202 hypothetical protein; Provisional
Probab=99.28 E-value=6e-11 Score=111.72 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=90.3
Q ss_pred CCCeEEEecCCCChhHHHHHH----cC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccc
Q 015966 189 SPPACLVPGAGLGRLALEISH----LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~----~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v 262 (397)
++.+|||+|||+|.++..|++ .| ..|+|+|+|..|+..|+-.. ..
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~---~~-------------------------- 110 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP---RR-------------------------- 110 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc---cc--------------------------
Confidence 567999999999999999885 35 48999999999998765110 00
Q ss_pred ccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh--HHHHHHHHHHhccCCcEEEE-e--cCCc
Q 015966 263 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWIN-L--GPLL 337 (397)
Q Consensus 263 ~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yi~~I~~~LKPGG~wIN-~--GPLl 337 (397)
.++.+..++...+. ..+++||+|++++.+....+ +...++.++++|| |+++|+ + +++.
T Consensus 111 -------------~~~~~~~~~~~~l~---~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~~~~~~ 173 (232)
T PRK06202 111 -------------PGVTFRQAVSDELV---AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLIRSRLA 173 (232)
T ss_pred -------------CCCeEEEEeccccc---ccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEeccccCHHH
Confidence 01233333332321 12478999999876543333 6689999999998 777776 1 2222
Q ss_pred chh---hhc--c-C----CCCCccc--cCCHHHHHHHHHhCCCEEEEEe
Q 015966 338 YHF---ADL--Y-G----QEDEMSI--ELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 338 Yh~---~d~--~-g----~~~~~~i--eLS~EEl~~ll~~~GFeii~e~ 374 (397)
|.. ... . + .....++ -+|.+|+.+++++ ||+++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~ 221 (232)
T PRK06202 174 YALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQW 221 (232)
T ss_pred HHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCeEEecc
Confidence 210 000 0 0 0111233 4799999999999 99998754
No 56
>PRK14968 putative methyltransferase; Provisional
Probab=99.26 E-value=1.6e-10 Score=103.60 Aligned_cols=129 Identities=20% Similarity=0.278 Sum_probs=90.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..|+++|.+|+|+|+|..|+..++..+... . + .
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~-----------------~------~---~----- 71 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLN-----------------N------I---R----- 71 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHc-----------------C------C---C-----
Confidence 4568999999999999999999999999999999997765322100 0 0 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee--cc-------------------CChhhHHHHHHHHHHhccCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FI-------------------DTAHNIVEYIEIISRILKDG 327 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F--FI-------------------Dta~Ni~~yi~~I~~~LKPG 327 (397)
..++.++.+|+.+... .++||+|++.. +. +....+..+++.+.++||||
T Consensus 72 ------~~~~~~~~~d~~~~~~----~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g 141 (188)
T PRK14968 72 ------NNGVEVIRSDLFEPFR----GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG 141 (188)
T ss_pred ------CcceEEEecccccccc----ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence 0114556777766432 34799998652 22 11333567899999999999
Q ss_pred cEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 328 G~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
|.++-+-+ -....+++.+++.+.||++....
T Consensus 142 G~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 142 GRILLLQS----------------SLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred eEEEEEEc----------------ccCCHHHHHHHHHHCCCeeeeee
Confidence 98873211 01235789999999999887643
No 57
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.26 E-value=8.5e-11 Score=107.95 Aligned_cols=145 Identities=17% Similarity=0.186 Sum_probs=94.7
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
++.+.+.++ ++.+|||+|||+|.++..|++. +..++|+|+|..|+..++-
T Consensus 4 ~~~i~~~i~-----~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~------------------------ 54 (194)
T TIGR02081 4 LESILNLIP-----PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA------------------------ 54 (194)
T ss_pred HHHHHHhcC-----CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH------------------------
Confidence 344555443 4568999999999999999865 6788999999999865430
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
.++.++.+|+.+... +..+++||+|++...+....|....++.+.+++|++.+ .+
T Consensus 55 ----------------------~~~~~~~~d~~~~l~-~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii--~~ 109 (194)
T TIGR02081 55 ----------------------RGVNVIQGDLDEGLE-AFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHAIV--SF 109 (194)
T ss_pred ----------------------cCCeEEEEEhhhccc-ccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEE--Ec
Confidence 013445667654211 12357899999987666667788899999998886532 22
Q ss_pred cCCcch------hhh--c--cC-------CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 334 GPLLYH------FAD--L--YG-------QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 334 GPLlYh------~~d--~--~g-------~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+...|. +.. . .+ ..+ .....+.+++.+++++.||++++..
T Consensus 110 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 110 PNFGYWRVRWSILTKGRMPVTGELPYDWYNTP-NIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred CChhHHHHHHHHHhCCccccCCCCCccccCCC-CcccCcHHHHHHHHHHCCCEEEEEE
Confidence 111110 000 0 00 000 0124699999999999999999854
No 58
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.26 E-value=2.4e-10 Score=104.63 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=99.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..+++.+. +++|+|.|..|+..++-..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------------------------------- 85 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------------------------------- 85 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---------------------------------
Confidence 567999999999999999999876 79999999999865541110
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecC---Cc----c
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP---LL----Y 338 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GP---Ll----Y 338 (397)
...++.+..+|+.+.. ...+.||+|++.+.+....+....++.+.++|||||+++-++. .. .
T Consensus 86 --------~~~~i~~~~~d~~~~~---~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 154 (223)
T TIGR01934 86 --------LPLNIEFIQADAEALP---FEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKK 154 (223)
T ss_pred --------cCCCceEEecchhcCC---CCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHH
Confidence 0012667888887742 2246899999888777777788999999999999999995321 10 0
Q ss_pred ----hhhhc---cCC---CCCc---------cccCCHHHHHHHHHhCCCEEEEEe
Q 015966 339 ----HFADL---YGQ---EDEM---------SIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 339 ----h~~d~---~g~---~~~~---------~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+.... .+. .... .-.++.++++.++++.||+++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 209 (223)
T TIGR01934 155 FYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYR 209 (223)
T ss_pred HHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceee
Confidence 00000 000 0000 113588999999999999988754
No 59
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.25 E-value=1.8e-11 Score=100.76 Aligned_cols=93 Identities=19% Similarity=0.199 Sum_probs=68.7
Q ss_pred EEEecCCCChhHHHHHHcC-----CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 193 CLVPGAGLGRLALEISHLG-----FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 193 VLvPGCGlGRLa~eLA~~G-----f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
|||+|||+|+.+..|++.. -.++|+|+|..||..++.... .. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~---~~-----------------------~------ 48 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS---ED-----------------------G------ 48 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH---HT-----------------------T------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch---hc-----------------------C------
Confidence 7999999999999999884 799999999999986652110 00 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG 328 (397)
..+.++++|+.++- ...++||+|++.+ ..-+.+.+...++.+.++|||||
T Consensus 49 --------~~~~~~~~D~~~l~---~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 49 --------PKVRFVQADARDLP---FSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp --------TTSEEEESCTTCHH---HHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred --------CceEEEECCHhHCc---ccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 02678999998863 2357999999942 23445668999999999999998
No 60
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.24 E-value=7.8e-11 Score=122.00 Aligned_cols=141 Identities=15% Similarity=0.097 Sum_probs=96.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..|++++..|+|+|+|..|+..++-. +.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~-~~----------------------------------- 80 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESI-NG----------------------------------- 80 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH-hc-----------------------------------
Confidence 456899999999999999999999999999999998644310 00
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
...++.++.+|+.+.. .+...++||+|++.+.+. +...+.+.++.++++|||||+++-.-.. ++...+...
T Consensus 81 -----~~~~i~~~~~d~~~~~-~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~-~~~~~~~~~ 153 (475)
T PLN02336 81 -----HYKNVKFMCADVTSPD-LNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC-FHQSGDSKR 153 (475)
T ss_pred -----cCCceEEEEecccccc-cCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc-CCCCCcccc
Confidence 0012667888876421 122357899999876433 2234789999999999999999842211 111110000
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
....+.-.+..++.+++.+.||..+.
T Consensus 154 ~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 154 KNNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred cCCCCeecChHHHHHHHHHheeccCC
Confidence 00113446788999999999998775
No 61
>PRK14967 putative methyltransferase; Provisional
Probab=99.23 E-value=1.7e-10 Score=108.41 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=87.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|+.|. .|+|+|+|..|+..++-.+... .+
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~--------------------------~~----- 84 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA--------------------------GV----- 84 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh--------------------------CC-----
Confidence 457999999999999999999988 8999999999998765221100 00
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCCh-------------------hhHHHHHHHHHHhccC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA-------------------HNIVEYIEIISRILKD 326 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta-------------------~Ni~~yi~~I~~~LKP 326 (397)
++.++.+|+.+.. ..++||+|++. |+-... ..+..+++.+.++|||
T Consensus 85 ---------~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~ 151 (223)
T PRK14967 85 ---------DVDVRRGDWARAV----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP 151 (223)
T ss_pred ---------eeEEEECchhhhc----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC
Confidence 1456778887642 24689999986 332211 1245678899999999
Q ss_pred CcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 327 GG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
||+++-+ . .. ....+++.+++++.||.+...
T Consensus 152 gG~l~~~----~--~~----------~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 152 GGSLLLV----Q--SE----------LSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CcEEEEE----E--ec----------ccCHHHHHHHHHHCCCCeEEE
Confidence 9999831 1 00 124567778888888876664
No 62
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.23 E-value=2.4e-10 Score=106.07 Aligned_cols=121 Identities=15% Similarity=0.163 Sum_probs=90.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..+|++ +..|+|+|.|..|+..++......
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~-------------------------------- 92 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL-------------------------------- 92 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc--------------------------------
Confidence 3679999999999999999864 679999999999998776322110
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
.. .++++..+|+.++. . .++||+|++..+ .++.++++.++++|||||+++-+-+
T Consensus 93 ------~l-~~i~~~~~d~~~~~---~-~~~fDlV~~~~~----~~~~~~l~~~~~~LkpGG~lv~~~~----------- 146 (187)
T PRK00107 93 ------GL-KNVTVVHGRAEEFG---Q-EEKFDVVTSRAV----ASLSDLVELCLPLLKPGGRFLALKG----------- 146 (187)
T ss_pred ------CC-CCEEEEeccHhhCC---C-CCCccEEEEccc----cCHHHHHHHHHHhcCCCeEEEEEeC-----------
Confidence 00 12678888887753 2 468999997653 4577899999999999999995311
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
.-...++.++.+..|+.+.+.
T Consensus 147 ------~~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 147 ------RDPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred ------CChHHHHHHHHHhcCceEeee
Confidence 123456777778889998774
No 63
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.23 E-value=5.7e-11 Score=110.53 Aligned_cols=151 Identities=21% Similarity=0.338 Sum_probs=101.5
Q ss_pred ccccChhHHhhchHHHHHHHHhhCCCCCC-CCCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHHhhhhccc
Q 015966 159 WAAEGKTERDQCYKPILEELDALFPNRSK-ESPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSSFILNHTE 235 (397)
Q Consensus 159 WS~eG~~ER~~~y~pIl~~L~~~~p~~~~-~~~~rVLvPGCGlGRLa~eLA~~Gf~--V~GnD~S~~ML~~s~fiLn~~~ 235 (397)
|-.+..+|| |+++|..+...... ....||||+|||.|.+.+.||+.||. .+|+|+|...+..|+-|..+..
T Consensus 42 WFg~~ae~r------iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~ 115 (227)
T KOG1271|consen 42 WFGEDAEER------IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG 115 (227)
T ss_pred ecCCcHHHH------HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC
Confidence 766767777 77888765541101 13349999999999999999999996 5999999999988875543321
Q ss_pred ccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE---e----eccC
Q 015966 236 TAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---C----FFID 308 (397)
Q Consensus 236 ~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT---~----FFID 308 (397)
. +| .++|-+.|+++-- ...++||+|.- . ..-|
T Consensus 116 ~-------------~n-------------------------~I~f~q~DI~~~~---~~~~qfdlvlDKGT~DAisLs~d 154 (227)
T KOG1271|consen 116 F-------------SN-------------------------EIRFQQLDITDPD---FLSGQFDLVLDKGTLDAISLSPD 154 (227)
T ss_pred C-------------Cc-------------------------ceeEEEeeccCCc---ccccceeEEeecCceeeeecCCC
Confidence 1 11 1344444444311 11245555541 1 1112
Q ss_pred Chh-hHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 309 TAH-NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 309 ta~-Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
-+. -+.-|+..+.++|+|||+|+-. +-..|.+||.+.++..||++..+
T Consensus 155 ~~~~r~~~Y~d~v~~ll~~~gifvIt-----------------SCN~T~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 155 GPVGRLVVYLDSVEKLLSPGGIFVIT-----------------SCNFTKDELVEEFENFNFEYLST 203 (227)
T ss_pred CcccceeeehhhHhhccCCCcEEEEE-----------------ecCccHHHHHHHHhcCCeEEEEe
Confidence 111 1356999999999999999941 45689999999999999988775
No 64
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.21 E-value=3e-10 Score=94.63 Aligned_cols=100 Identities=19% Similarity=0.088 Sum_probs=71.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|+++..++++ +-.|+|+|.|..|+..++..++.. .+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------~~-- 68 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF----------------------------GV-- 68 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh----------------------------CC--
Confidence 4569999999999999999997 358999999999998766322110 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.++.++.+|..+... ...++||+|++..-. ..+.++++.++++|||||++|-
T Consensus 69 ---------~~~~~~~~~~~~~~~--~~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 69 ---------SNIVIVEGDAPEALE--DSLPEPDRVFIGGSG---GLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred ---------CceEEEeccccccCh--hhcCCCCEEEECCcc---hhHHHHHHHHHHHcCCCCEEEE
Confidence 014556676543211 123689999875422 2356899999999999999984
No 65
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.20 E-value=9.1e-11 Score=113.85 Aligned_cols=145 Identities=21% Similarity=0.273 Sum_probs=103.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--------CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcc
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--------FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 260 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--------f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr 260 (397)
++.+|||.|||||-+|+-|.+.- -.|++.|+|++||.++.. ++.+ |
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq---Ra~~-----------------------~ 153 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ---RAKK-----------------------R 153 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH---HHhh-----------------------c
Confidence 57899999999999999997762 469999999999987651 1110 1
Q ss_pred ccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe-------
Q 015966 261 PVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL------- 333 (397)
Q Consensus 261 ~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~------- 333 (397)
+++ ....+.++.||..++ |+.+.+||+.+..|=|-...++.+.+++.||+|||||+|..+
T Consensus 154 ~l~----------~~~~~~w~~~dAE~L---pFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~ 220 (296)
T KOG1540|consen 154 PLK----------ASSRVEWVEGDAEDL---PFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVEN 220 (296)
T ss_pred CCC----------cCCceEEEeCCcccC---CCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccccc
Confidence 111 011378899998776 345799999998888888888999999999999999999841
Q ss_pred cCCcchhhh-c------cCC---CCCc-------cc--cCCHHHHHHHHHhCCCEEEE
Q 015966 334 GPLLYHFAD-L------YGQ---EDEM-------SI--ELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 334 GPLlYh~~d-~------~g~---~~~~-------~i--eLS~EEl~~ll~~~GFeii~ 372 (397)
-|+.|-+.. . .|. .+-. +| -++.||+..+++.+||....
T Consensus 221 ~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 221 EPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 233322111 0 000 0001 22 25899999999999998875
No 66
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.19 E-value=9.4e-11 Score=97.68 Aligned_cols=104 Identities=23% Similarity=0.315 Sum_probs=77.1
Q ss_pred CCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
+.+|||||||+|+++..++++| ..++|+|+++..+..++..+...
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~---------------------------------- 46 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRN---------------------------------- 46 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHC----------------------------------
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHc----------------------------------
Confidence 3589999999999999999999 99999999999998887443211
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCCh-------hhHHHHHHHHHHhccCCcEEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------HNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta-------~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
....++.++.+|+.++.. +...++||+|+++- |.... ....+.++.+.++|||||+++-
T Consensus 47 ----~~~~~~~~~~~D~~~~~~-~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 47 ----GLDDRVEVIVGDARDLPE-PLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp ----TTTTTEEEEESHHHHHHH-TCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----cCCceEEEEECchhhchh-hccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 011237889999988741 12368999999983 33321 1235789999999999999984
No 67
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.17 E-value=8.4e-10 Score=100.67 Aligned_cols=122 Identities=14% Similarity=-0.017 Sum_probs=86.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..+++++ ..|+|+|+|..|+..++-..... .+
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~----------------------------~~-- 80 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF----------------------------GC-- 80 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----------------------------CC--
Confidence 56799999999999999999885 58999999999997765211100 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
.++.++.+|..... .+.||+|+..... .++.++++.++++|||||+++-...
T Consensus 81 ---------~~i~~~~~d~~~~~-----~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~----------- 132 (187)
T PRK08287 81 ---------GNIDIIPGEAPIEL-----PGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFI----------- 132 (187)
T ss_pred ---------CCeEEEecCchhhc-----CcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEe-----------
Confidence 12566777753221 3579999875432 3466789999999999999984110
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
..-+.+++.+++++.||+.++.
T Consensus 133 -----~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 133 -----LLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred -----cHhhHHHHHHHHHHCCCCcceE
Confidence 1234578899999999976553
No 68
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.17 E-value=8.4e-10 Score=103.63 Aligned_cols=136 Identities=18% Similarity=0.182 Sum_probs=93.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
+++.+.+.++. ...+|||+|||+|.++..+++. +..++|+|+|..|+..++..+...
T Consensus 76 l~~~~l~~~~~----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~----------------- 134 (251)
T TIGR03534 76 LVEAALERLKK----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL----------------- 134 (251)
T ss_pred HHHHHHHhccc----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 44444444431 3468999999999999999987 678999999999998776332110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCC------h--------------
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------A-------------- 310 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt------a-------------- 310 (397)
. . .++.+..+|+.+... .++||+|+++. |+.. .
T Consensus 135 ---------~------------~-~~~~~~~~d~~~~~~----~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~ 188 (251)
T TIGR03534 135 ---------G------------L-DNVTFLQSDWFEPLP----GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFG 188 (251)
T ss_pred ---------C------------C-CeEEEEECchhccCc----CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcC
Confidence 0 0 126778899876432 47899999862 2210 0
Q ss_pred -----hhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 311 -----HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 311 -----~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
......++.+.++|||||+++-- .+ .-..+++++++++.||+.++.
T Consensus 189 ~~~~~~~~~~~i~~~~~~L~~gG~~~~~----~~-------------~~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 189 GEDGLDFYRRIIAQAPRLLKPGGWLLLE----IG-------------YDQGEAVRALFEAAGFADVET 239 (251)
T ss_pred CCcHHHHHHHHHHHHHHhcccCCEEEEE----EC-------------ccHHHHHHHHHHhCCCCceEE
Confidence 11235788999999999998831 10 123578999999999987654
No 69
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.16 E-value=1.7e-10 Score=107.38 Aligned_cols=145 Identities=19% Similarity=0.133 Sum_probs=93.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..++-.+... .
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~----------------------------~--- 88 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE----------------------------G--- 88 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc----------------------------C---
Confidence 4679999999999999999987 457999999999998665221100 0
Q ss_pred CCCCCCCCCCcceeEeccc-ccccCCCCCCCCccEEEEeecc---CChh-----hHHHHHHHHHHhccCCcEEEEecCCc
Q 015966 267 IHPASAGITEGFSMCGGDF-VEVYSDPSQVGAWDAVVTCFFI---DTAH-----NIVEYIEIISRILKDGGVWINLGPLL 337 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF-~ely~~~~~~~~fD~VvT~FFI---Dta~-----Ni~~yi~~I~~~LKPGG~wIN~GPLl 337 (397)
..++.++.+|+ ..+.. ....++||+|++.|-. .... ....+++.++++|||||+++-.-+
T Consensus 89 --------~~~v~~~~~d~~~~l~~-~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~-- 157 (202)
T PRK00121 89 --------LTNLRLLCGDAVEVLLD-MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD-- 157 (202)
T ss_pred --------CCCEEEEecCHHHHHHH-HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC--
Confidence 01367788898 43321 0125789999875421 1111 145789999999999999984211
Q ss_pred chhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCCCccccccccc
Q 015966 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQVSF 392 (397)
Q Consensus 338 Yh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~d~~sm~~~~Y 392 (397)
..--.+++.+.+++.||..... .-.|+..+.....+.|
T Consensus 158 --------------~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~ 195 (202)
T PRK00121 158 --------------WEGYAEYMLEVLSAEGGFLVSE---AGDYVPRPEGRPMTEY 195 (202)
T ss_pred --------------CHHHHHHHHHHHHhCccccccc---chhhcccCccCCCcHH
Confidence 1123456777888889866522 2244444444444444
No 70
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.15 E-value=3.2e-10 Score=112.93 Aligned_cols=123 Identities=21% Similarity=0.195 Sum_probs=87.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||||||+|.++.+.+..|..|+|+|++..|+..++..++.. .+
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~----------------------------g~---- 229 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHY----------------------------GI---- 229 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHh----------------------------CC----
Confidence 5679999999999999999999999999999999998766322110 00
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--ecc----C--Ch-hhHHHHHHHHHHhccCCcEEEEecCCcch
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFI----D--TA-HNIVEYIEIISRILKDGGVWINLGPLLYH 339 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFI----D--ta-~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh 339 (397)
.++.+..+|+.++. ...+.||+|++. |-+ . .. ....+.++.++++|||||.++-.-|
T Consensus 230 -------~~i~~~~~D~~~l~---~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~---- 295 (329)
T TIGR01177 230 -------EDFFVKRGDATKLP---LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP---- 295 (329)
T ss_pred -------CCCeEEecchhcCC---cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc----
Confidence 01466788988752 225789999986 321 1 11 2246889999999999999885322
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 340 ~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
+..++..+++++|| ++..
T Consensus 296 ---------------~~~~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 296 ---------------TRIDLESLAEDAFR-VVKR 313 (329)
T ss_pred ---------------CCCCHHHHHhhcCc-chhe
Confidence 11244467889999 6653
No 71
>PHA03411 putative methyltransferase; Provisional
Probab=99.14 E-value=5.4e-10 Score=109.87 Aligned_cols=133 Identities=16% Similarity=0.088 Sum_probs=94.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
...+|||+|||+|.++..++++ +.+|+|+|+|..|+..++.. +|
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n---------------------------------~~- 109 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL---------------------------------LP- 109 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---------------------------------Cc-
Confidence 3568999999999999999876 57999999999999766511 01
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCCh---hh---------------HHHHHHHHHHhccC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA---HN---------------IVEYIEIISRILKD 326 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta---~N---------------i~~yi~~I~~~LKP 326 (397)
++.++.+|++++.. ..+||+|++. |+.... .+ +.+.++.+..+|||
T Consensus 110 ----------~v~~v~~D~~e~~~----~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p 175 (279)
T PHA03411 110 ----------EAEWITSDVFEFES----NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP 175 (279)
T ss_pred ----------CCEEEECchhhhcc----cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecC
Confidence 15678899987532 3689999985 653211 22 23556777788899
Q ss_pred CcEEEEe--cCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCC
Q 015966 327 GGVWINL--GPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYT 381 (397)
Q Consensus 327 GG~wIN~--GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~ 381 (397)
+|..+-. |--+| .-.|+.+|++++++..||....-=.+++.|-
T Consensus 176 ~G~~~~~yss~~~y------------~~sl~~~~y~~~l~~~g~~~~~~~~~~~~~~ 220 (279)
T PHA03411 176 TGSAGFAYSGRPYY------------DGTMKSNKYLKWSKQTGLVTYAGCGIDTSIY 220 (279)
T ss_pred CceEEEEEeccccc------------cccCCHHHHHHHHHhcCcEecCCCCccccee
Confidence 9955531 21122 2349999999999999999876555665543
No 72
>PRK04266 fibrillarin; Provisional
Probab=99.10 E-value=3e-09 Score=101.55 Aligned_cols=143 Identities=17% Similarity=0.089 Sum_probs=87.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||+.. -.|+|+|+|..||.... ..+.+.
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~---~~a~~~----------------------------- 119 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL---EVAEER----------------------------- 119 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH---HHhhhc-----------------------------
Confidence 67799999999999999999872 47999999999986332 111100
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
.++..+.+|..+........+.||+|+.. +.........++.++++|||||.++-. +-|+-.+ ...
T Consensus 120 ---------~nv~~i~~D~~~~~~~~~l~~~~D~i~~d--~~~p~~~~~~L~~~~r~LKpGG~lvI~--v~~~~~d-~~~ 185 (226)
T PRK04266 120 ---------KNIIPILADARKPERYAHVVEKVDVIYQD--VAQPNQAEIAIDNAEFFLKDGGYLLLA--IKARSID-VTK 185 (226)
T ss_pred ---------CCcEEEECCCCCcchhhhccccCCEEEEC--CCChhHHHHHHHHHHHhcCCCcEEEEE--Eeccccc-CcC
Confidence 12455667765421000112569999753 222222345689999999999999953 1121111 000
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCC
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTT 382 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~ 382 (397)
. ..... ++..+.++++||++++... ..+|..
T Consensus 186 ~---~~~~~-~~~~~~l~~aGF~~i~~~~-l~p~~~ 216 (226)
T PRK04266 186 D---PKEIF-KEEIRKLEEGGFEILEVVD-LEPYHK 216 (226)
T ss_pred C---HHHHH-HHHHHHHHHcCCeEEEEEc-CCCCcC
Confidence 1 11233 4455889999999987543 344544
No 73
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.09 E-value=2.5e-09 Score=106.24 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=112.6
Q ss_pred chhhHHHHHHHHHH---------------hcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHH
Q 015966 143 ADVDKVRCIIRNIV---------------RDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEI 207 (397)
Q Consensus 143 ~d~dkv~stL~q~~---------------RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eL 207 (397)
.+..++..+|++|. -+|-+.-+-.| |..++++. ++.+|||+|||.|...+.+
T Consensus 67 ~~~~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW~r----------l~p~l~~L---~gk~VLDIGC~nGY~~frM 133 (315)
T PF08003_consen 67 EQRQQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKWDR----------LLPHLPDL---KGKRVLDIGCNNGYYSFRM 133 (315)
T ss_pred HHHHHHHHHHHhhCCcccCCcccCCEeecccccccchHHH----------HHhhhCCc---CCCEEEEecCCCcHHHHHH
Confidence 55677777777762 34444433333 34444322 6789999999999999999
Q ss_pred HHcCCe-EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccc
Q 015966 208 SHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFV 286 (397)
Q Consensus 208 A~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ 286 (397)
+.+|.. |.|+|-+..-+....++-+...... . ..++ ....
T Consensus 134 ~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~----------------------~----------------~~~l-plgv 174 (315)
T PF08003_consen 134 LGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDP----------------------P----------------VFEL-PLGV 174 (315)
T ss_pred hhcCCCEEEEECCChHHHHHHHHHHHHhCCCc----------------------c----------------EEEc-Ccch
Confidence 999985 9999999877665554432110000 0 0011 0111
Q ss_pred cccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE-----ecCCcch--hhhccCCCCCccccCCHHHH
Q 015966 287 EVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-----LGPLLYH--FADLYGQEDEMSIELSLEDV 359 (397)
Q Consensus 287 ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN-----~GPLlYh--~~d~~g~~~~~~ieLS~EEl 359 (397)
+..|. .+.||+|+++=.|=...+.++.|+.+.+.|||||.+|- -|+.-.. -++.|..-++..+-.|..-|
T Consensus 175 --E~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L 251 (315)
T PF08003_consen 175 --EDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAAL 251 (315)
T ss_pred --hhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHH
Confidence 12223 57899999884444455678999999999999999992 1222111 11223333334556799999
Q ss_pred HHHHHhCCCEEEEE
Q 015966 360 KRVALHYGFEFEKE 373 (397)
Q Consensus 360 ~~ll~~~GFeii~e 373 (397)
+.+++++||+.++-
T Consensus 252 ~~wl~r~gF~~v~~ 265 (315)
T PF08003_consen 252 KNWLERAGFKDVRC 265 (315)
T ss_pred HHHHHHcCCceEEE
Confidence 99999999998874
No 74
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.09 E-value=2.4e-09 Score=98.96 Aligned_cols=127 Identities=15% Similarity=0.093 Sum_probs=89.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++.++|++ +-.|+|+|.|..|+..++...... .
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~----------------------------g-- 89 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF----------------------------G-- 89 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh----------------------------C--
Confidence 6779999999999999999875 357999999999998766322110 0
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
...++.++.+|+.++.. ...+.||+|+.... ..++.++++.+.++|||||++|-.-+ .
T Consensus 90 --------~~~~v~~~~~d~~~~l~--~~~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~------~--- 147 (198)
T PRK00377 90 --------VLNNIVLIKGEAPEILF--TINEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAI------L--- 147 (198)
T ss_pred --------CCCCeEEEEechhhhHh--hcCCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEee------c---
Confidence 01236677888876432 12368999987542 24567899999999999999883111 0
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.-+.+++..++++.||..+..+
T Consensus 148 -------~~~~~~~~~~l~~~g~~~~~~~ 169 (198)
T PRK00377 148 -------LETVNNALSALENIGFNLEITE 169 (198)
T ss_pred -------HHHHHHHHHHHHHcCCCeEEEE
Confidence 1235788888999999765543
No 75
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.08 E-value=7.8e-10 Score=107.43 Aligned_cols=117 Identities=14% Similarity=0.204 Sum_probs=76.5
Q ss_pred CCCeEEEecCCCCh----hHHHHHHc-------CCeEEEEeCCHHHHHHHHhhhhcccccCccccccc----------cc
Q 015966 189 SPPACLVPGAGLGR----LALEISHL-------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW----------IH 247 (397)
Q Consensus 189 ~~~rVLvPGCGlGR----La~eLA~~-------Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPf----------i~ 247 (397)
++.+||+.|||+|. ||..|++. ++.|+|+|+|..||..|+-- +||- ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~-----------~y~~~~~~~~~~~~~~ 167 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG-----------IYPERELEDLPKALLA 167 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC-----------CCCHHHHhcCCHHHHh
Confidence 46899999999997 45555553 47899999999999877621 1210 00
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhc
Q 015966 248 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRIL 324 (397)
Q Consensus 248 ~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~L 324 (397)
.+-.. ... ...+.+ .+...+.|.++|+.+... ..++||+|++.. |++ .++..+.++.++++|
T Consensus 168 ~yf~~--~~~---~~~v~~------~ir~~V~F~~~dl~~~~~---~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L 232 (264)
T smart00138 168 RYFSR--VED---KYRVKP------ELKERVRFAKHNLLAESP---PLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEAL 232 (264)
T ss_pred hhEEe--CCC---eEEECh------HHhCcCEEeeccCCCCCC---ccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHh
Confidence 00000 000 011100 122358899999887532 257899999853 344 355779999999999
Q ss_pred cCCcEEE
Q 015966 325 KDGGVWI 331 (397)
Q Consensus 325 KPGG~wI 331 (397)
||||+++
T Consensus 233 ~pGG~L~ 239 (264)
T smart00138 233 KPGGYLF 239 (264)
T ss_pred CCCeEEE
Confidence 9999999
No 76
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.07 E-value=5.2e-09 Score=102.70 Aligned_cols=140 Identities=13% Similarity=0.045 Sum_probs=91.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+|||+|||+|.++..++++. ..++++|+ +.|+..++-.+. +.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~---~~----------------------------- 195 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA---EK----------------------------- 195 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHH---hC-----------------------------
Confidence 56799999999999999999994 67999998 678876552111 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCc-------
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLL------- 337 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLl------- 337 (397)
...+++++++|||.+. .. ..+|+|+...++. ..+.....|+.+++.|||||+++-.-...
T Consensus 196 ------gl~~rv~~~~~d~~~~-~~----~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~ 264 (306)
T TIGR02716 196 ------GVADRMRGIAVDIYKE-SY----PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN 264 (306)
T ss_pred ------CccceEEEEecCccCC-CC----CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCch
Confidence 1123478899998763 21 2369988776543 23445789999999999999998532111
Q ss_pred ----chhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 338 ----YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 338 ----Yh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
+++-...+......-..+.+|++++++++||+.++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 265 FDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred hhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence 00000000000000012479999999999998765
No 77
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.07 E-value=1.7e-09 Score=101.40 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=69.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|+++..|++. |..++|+|+|..|+..|+-. +|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~---------------------------------~~- 88 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY---------------------------------LP- 88 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh---------------------------------CC-
Confidence 4568999999999999999987 68999999999999876510 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
++.+..+|+.+. ...++||+|++.. +++ ..++..++++++++++ +++|
T Consensus 89 ----------~~~~~~~d~~~~----~~~~sfD~V~~~~vL~hl~-p~~~~~~l~el~r~~~--~~v~ 139 (204)
T TIGR03587 89 ----------NINIIQGSLFDP----FKDNFFDLVLTKGVLIHIN-PDNLPTAYRELYRCSN--RYIL 139 (204)
T ss_pred ----------CCcEEEeeccCC----CCCCCEEEEEECChhhhCC-HHHHHHHHHHHHhhcC--cEEE
Confidence 134567787662 2357999999875 354 3568899999999984 4444
No 78
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.06 E-value=5.8e-10 Score=104.75 Aligned_cols=131 Identities=16% Similarity=0.164 Sum_probs=91.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
.-.++|+||||.|.|+..||.+.-.++++|+|...|..|+--+. .
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~---~-------------------------------- 87 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA---G-------------------------------- 87 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT---T--------------------------------
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC---C--------------------------------
Confidence 34689999999999999999999899999999999987772221 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
..++++.++|+.+... .++||+||.. ||++...++..+++.+...|+|||.+|- | |+.+...
T Consensus 88 ------~~~V~~~~~dvp~~~P----~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~-g----~~rd~~c 152 (201)
T PF05401_consen 88 ------LPHVEWIQADVPEFWP----EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVF-G----HARDANC 152 (201)
T ss_dssp -------SSEEEEES-TTT-------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEE-E----EE-HHHH
T ss_pred ------CCCeEEEECcCCCCCC----CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEE-E----EecCCcc
Confidence 0137889999877643 5899999965 7999888899999999999999999994 2 3333210
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.. -......|.|.+++.+. |..++
T Consensus 153 ~~--wgh~~ga~tv~~~~~~~-~~~~~ 176 (201)
T PF05401_consen 153 RR--WGHAAGAETVLEMLQEH-LTEVE 176 (201)
T ss_dssp HH--TT-S--HHHHHHHHHHH-SEEEE
T ss_pred cc--cCcccchHHHHHHHHHH-hhhee
Confidence 00 01346899999999885 55444
No 79
>PTZ00146 fibrillarin; Provisional
Probab=99.06 E-value=3.2e-09 Score=105.20 Aligned_cols=168 Identities=16% Similarity=0.100 Sum_probs=98.3
Q ss_pred HHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhh
Q 015966 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 155 ~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiL 231 (397)
-+|.|..- |. .+-..|..-+......++.+|||+|||+|..+..||+. | =.|+++|+|..|+.- ++
T Consensus 106 eyR~w~p~----rS----Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~d---Ll 174 (293)
T PTZ00146 106 EYRVWNPF----RS----KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRD---LT 174 (293)
T ss_pred eeeeeCCc----cc----HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHH---HH
Confidence 38999864 32 34444433333222346789999999999999999987 2 269999999876521 11
Q ss_pred hcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccc--cCCCCCCCCccEEEEeeccCC
Q 015966 232 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDT 309 (397)
Q Consensus 232 n~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~el--y~~~~~~~~fD~VvT~FFIDt 309 (397)
+.+... .++..+.+|++.. |.. ..+.+|+|+.... .
T Consensus 175 ~~ak~r--------------------------------------~NI~~I~~Da~~p~~y~~--~~~~vDvV~~Dva--~ 212 (293)
T PTZ00146 175 NMAKKR--------------------------------------PNIVPIIEDARYPQKYRM--LVPMVDVIFADVA--Q 212 (293)
T ss_pred HHhhhc--------------------------------------CCCEEEECCccChhhhhc--ccCCCCEEEEeCC--C
Confidence 111100 1244566676532 221 1357999976543 1
Q ss_pred hhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCCC
Q 015966 310 AHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTN 383 (397)
Q Consensus 310 a~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~d 383 (397)
..+...++..++++|||||.+|- .+........++ ...-++ +|+ +.|++.||++++... ..+|..+
T Consensus 213 pdq~~il~~na~r~LKpGG~~vI----~ika~~id~g~~-pe~~f~-~ev-~~L~~~GF~~~e~v~-L~Py~~~ 278 (293)
T PTZ00146 213 PDQARIVALNAQYFLKNGGHFII----SIKANCIDSTAK-PEVVFA-SEV-QKLKKEGLKPKEQLT-LEPFERD 278 (293)
T ss_pred cchHHHHHHHHHHhccCCCEEEE----EEeccccccCCC-HHHHHH-HHH-HHHHHcCCceEEEEe-cCCccCC
Confidence 22344566789999999999994 233222100011 011133 445 778899999886543 3455544
No 80
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.01 E-value=1.1e-08 Score=100.52 Aligned_cols=125 Identities=12% Similarity=0.158 Sum_probs=88.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+|||+|||+|.++..||++ +..|+|+|+|..|+..|+.-.+.. .
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~--------------------------~----- 169 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH--------------------------G----- 169 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-----
Confidence 3468999999999999999987 578999999999998877322100 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCC------------------------hhhHHHHHHHHH
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------------------------AHNIVEYIEIIS 321 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt------------------------a~Ni~~yi~~I~ 321 (397)
...++.++.+|+.+... .++||+|+++= |+.. ..-....++.+.
T Consensus 170 -------~~~~i~~~~~D~~~~~~----~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~ 238 (284)
T TIGR03533 170 -------LEDRVTLIQSDLFAALP----GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAA 238 (284)
T ss_pred -------CCCcEEEEECchhhccC----CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHH
Confidence 01237788899866332 35799999861 1110 012345688889
Q ss_pred HhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 322 RILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 322 ~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
++|||||+++- .+..+.+++++++.+.||.....
T Consensus 239 ~~L~~gG~l~~------------------e~g~~~~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 239 DHLNENGVLVV------------------EVGNSMEALEEAYPDVPFTWLEF 272 (284)
T ss_pred HhcCCCCEEEE------------------EECcCHHHHHHHHHhCCCceeee
Confidence 99999999883 01234578999999999987654
No 81
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.01 E-value=8.5e-09 Score=98.60 Aligned_cols=124 Identities=23% Similarity=0.269 Sum_probs=87.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+|||+|||+|.++..+++.. ..|+|+|+|..|+..++-.+..
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~--------------------------------- 154 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH--------------------------------- 154 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh---------------------------------
Confidence 56799999999999999999986 7899999999999877632210
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCC-------------------------hhhHHHHHHHH
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT-------------------------AHNIVEYIEII 320 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt-------------------------a~Ni~~yi~~I 320 (397)
....++.++.+|+.+.. ..++||+|+++. |+.. ...+..+++.+
T Consensus 155 ------~~~~~i~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~ 224 (275)
T PRK09328 155 ------GLGARVEFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQA 224 (275)
T ss_pred ------CCCCcEEEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHH
Confidence 00123677888875532 147899999862 2221 12234678888
Q ss_pred HHhccCCcEEEE-ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 321 SRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 321 ~~~LKPGG~wIN-~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
.++|||||+++- .|+ -..++++.++++.||..+..
T Consensus 225 ~~~Lk~gG~l~~e~g~------------------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 225 PRYLKPGGWLLLEIGY------------------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred HHhcccCCEEEEEECc------------------hHHHHHHHHHHhCCCceeEE
Confidence 899999999883 111 12367889999999975443
No 82
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.00 E-value=4.1e-09 Score=98.56 Aligned_cols=109 Identities=15% Similarity=0.091 Sum_probs=76.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~---V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
.++..+.+.+.. .++.+|||+|||+|.++..||+++-. |+|+|++..|+..|+..+...
T Consensus 64 ~~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~--------------- 125 (215)
T TIGR00080 64 HMVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL--------------- 125 (215)
T ss_pred HHHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC---------------
Confidence 344555555432 26779999999999999999998544 999999999998776333210
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcE
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~ 329 (397)
. -.++.++.+|..+... ..+.||+|+...-. ..+.+.+.+.|||||+
T Consensus 126 -----------g-------------~~~v~~~~~d~~~~~~---~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG~ 172 (215)
T TIGR00080 126 -----------G-------------LDNVIVIVGDGTQGWE---PLAPYDRIYVTAAG------PKIPEALIDQLKEGGI 172 (215)
T ss_pred -----------C-------------CCCeEEEECCcccCCc---ccCCCCEEEEcCCc------ccccHHHHHhcCcCcE
Confidence 0 0136778899876432 24689999865322 2345678899999999
Q ss_pred EEE
Q 015966 330 WIN 332 (397)
Q Consensus 330 wIN 332 (397)
+|-
T Consensus 173 lv~ 175 (215)
T TIGR00080 173 LVM 175 (215)
T ss_pred EEE
Confidence 984
No 83
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.00 E-value=5.7e-09 Score=97.30 Aligned_cols=111 Identities=18% Similarity=0.132 Sum_probs=76.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
+.++..+.+.+.. .++.+|||+|||+|.++..||++ +-.|+|+|+|..|+..++-.+...
T Consensus 58 p~~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~-------------- 120 (205)
T PRK13944 58 PHMVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL-------------- 120 (205)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--------------
Confidence 3355555555432 25679999999999999999875 358999999999997665222110
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCc
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG 328 (397)
....++++..+|+.+... ..+.||+|+...-+. .+.+.+.+.|||||
T Consensus 121 ------------------------~~~~~v~~~~~d~~~~~~---~~~~fD~Ii~~~~~~------~~~~~l~~~L~~gG 167 (205)
T PRK13944 121 ------------------------GYWGVVEVYHGDGKRGLE---KHAPFDAIIVTAAAS------TIPSALVRQLKDGG 167 (205)
T ss_pred ------------------------CCCCcEEEEECCcccCCc---cCCCccEEEEccCcc------hhhHHHHHhcCcCc
Confidence 001136788899876432 246899998765433 23457889999999
Q ss_pred EEEE
Q 015966 329 VWIN 332 (397)
Q Consensus 329 ~wIN 332 (397)
++|-
T Consensus 168 ~lvi 171 (205)
T PRK13944 168 VLVI 171 (205)
T ss_pred EEEE
Confidence 9973
No 84
>PRK06922 hypothetical protein; Provisional
Probab=98.99 E-value=2.1e-09 Score=115.98 Aligned_cols=104 Identities=17% Similarity=0.111 Sum_probs=76.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..++-.+. .
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~---~------------------------------ 464 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQ---N------------------------------ 464 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhh---h------------------------------
Confidence 4679999999999999999875 5799999999999976652110 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC-------------ChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-------------TAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID-------------ta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
.+.++.++.+|+.++.. ...+++||+|++++.++ ...++...|+.++++|||||.+|..
T Consensus 465 -------~g~~ie~I~gDa~dLp~-~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 465 -------EGRSWNVIKGDAINLSS-SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred -------cCCCeEEEEcchHhCcc-ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 00125667888776421 12357899999875322 2356889999999999999999963
No 85
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=98.99 E-value=6.8e-09 Score=93.98 Aligned_cols=109 Identities=19% Similarity=0.249 Sum_probs=78.4
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~--V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
-+++.+... +..+|||+|||+|-++..+|+++-. |+++|+|..++..++.-+.. +.
T Consensus 22 lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~----n~----------- 79 (170)
T PF05175_consen 22 LLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER----NG----------- 79 (170)
T ss_dssp HHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH----TT-----------
T ss_pred HHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh----cC-----------
Confidence 466666654 3568999999999999999999876 99999999999877632210 00
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee--ccCCh---hhHHHHHHHHHHhcc
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTA---HNIVEYIEIISRILK 325 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F--FIDta---~Ni~~yi~~I~~~LK 325 (397)
. .++.++.+|+.+-.. .++||+|+++- .-... .-+.+.++...++||
T Consensus 80 -----------------------~-~~v~~~~~d~~~~~~----~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk 131 (170)
T PF05175_consen 80 -----------------------L-ENVEVVQSDLFEALP----DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLK 131 (170)
T ss_dssp -----------------------C-TTEEEEESSTTTTCC----TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEE
T ss_pred -----------------------c-ccccccccccccccc----ccceeEEEEccchhcccccchhhHHHHHHHHHHhcc
Confidence 0 115678888766332 58999999984 22211 235678999999999
Q ss_pred CCcEEE
Q 015966 326 DGGVWI 331 (397)
Q Consensus 326 PGG~wI 331 (397)
|||.++
T Consensus 132 ~~G~l~ 137 (170)
T PF05175_consen 132 PGGRLF 137 (170)
T ss_dssp EEEEEE
T ss_pred CCCEEE
Confidence 999886
No 86
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.99 E-value=8.2e-09 Score=100.13 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=99.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
...+|||+|||+|-++..||++ . ..++|+|+...|...|+--++. +
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l----n---------------------------- 91 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL----N---------------------------- 91 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh----C----------------------------
Confidence 4789999999999999999999 6 7899999999998877622211 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCCh----------------hhHHHHHHHHHHhccCCc
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA----------------HNIVEYIEIISRILKDGG 328 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta----------------~Ni~~yi~~I~~~LKPGG 328 (397)
+..++++++++|+.++.. .....+||+|+++ ||-... -++.++++...++|||||
T Consensus 92 ------~l~~ri~v~~~Di~~~~~-~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G 164 (248)
T COG4123 92 ------PLEERIQVIEADIKEFLK-ALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGG 164 (248)
T ss_pred ------cchhceeEehhhHHHhhh-cccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCC
Confidence 123458999999988654 2234579999988 663211 247789999999999999
Q ss_pred EEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 329 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 329 ~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
.+.-+-| .....||..++.+++|+..+-..+
T Consensus 165 ~l~~V~r-----------------~erl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 165 RLAFVHR-----------------PERLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred EEEEEec-----------------HHHHHHHHHHHHhcCCCceEEEEe
Confidence 9884211 245678999999999988876544
No 87
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.98 E-value=2.2e-09 Score=99.14 Aligned_cols=104 Identities=21% Similarity=0.285 Sum_probs=73.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
.+.+|||+|||+|.++..+|++ +..|+|+|+|..|+..++-.+... .
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~--------------------------~----- 64 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL--------------------------G----- 64 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh--------------------------C-----
Confidence 4569999999999999999998 568999999999997665221100 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC----hh--h---HHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT----AH--N---IVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt----a~--N---i~~yi~~I~~~LKPGG~wIN 332 (397)
. .++.++.+|+.++.......+.+|.|+..| -|. .+ + ..+.++.++++|||||.++-
T Consensus 65 -------l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~-pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 65 -------L-KNLHVLCGDANELLDKFFPDGSLSKVFLNF-PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred -------C-CCEEEEccCHHHHHHhhCCCCceeEEEEEC-CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 0 137889999876421111246899998765 121 10 1 14789999999999999973
No 88
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.96 E-value=6.6e-09 Score=80.64 Aligned_cols=100 Identities=21% Similarity=0.306 Sum_probs=75.3
Q ss_pred eEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCC
Q 015966 192 ACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~ 270 (397)
+||++|||.|.++..+++ .+..++++|.+..++..++......
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------------------------------------ 44 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL------------------------------------ 44 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc------------------------------------
Confidence 589999999999999998 6779999999999987554211000
Q ss_pred CCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC-hhhHHHHHHHHHHhccCCcEEEE
Q 015966 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-AHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 271 ~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-a~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
....+.+..+|+.+... ...+.||+|++...+.. ......+++.+.+.|||||+++-
T Consensus 45 ---~~~~~~~~~~~~~~~~~--~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 45 ---LADNVEVLKGDAEELPP--EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred ---cccceEEEEcChhhhcc--ccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEE
Confidence 01126677888776532 12468999998876665 66788999999999999999983
No 89
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.96 E-value=7e-09 Score=95.42 Aligned_cols=99 Identities=19% Similarity=0.153 Sum_probs=69.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++.++|++ +..|+|+|+|..|+..++-.++.. .+
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~----------------------------~~-- 89 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF----------------------------GV-- 89 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----------------------------CC--
Confidence 5679999999999999999875 478999999999998765221100 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.++.++.+|+.+.+. .....+|.|+ ++...++.++++.++++|||||++|-
T Consensus 90 ---------~~v~~~~~d~~~~~~--~~~~~~d~v~----~~~~~~~~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 90 ---------KNVEVIEGSAPECLA--QLAPAPDRVC----IEGGRPIKEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred ---------CCeEEEECchHHHHh--hCCCCCCEEE----EECCcCHHHHHHHHHHhcCCCeEEEE
Confidence 125667788755322 1123456653 23344577899999999999999995
No 90
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=98.95 E-value=1.8e-08 Score=97.31 Aligned_cols=131 Identities=14% Similarity=0.132 Sum_probs=87.9
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
..+|||+|||+|.++..++++ |..|+|+|+|..|+..|+.-++. +
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~----~----------------------------- 133 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD----A----------------------------- 133 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 458999999999999999876 67899999999999877632210 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCCh-------------------------hhHHHHHHHHH
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------------------------HNIVEYIEIIS 321 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta-------------------------~Ni~~yi~~I~ 321 (397)
+..++.+|+.+.... ...++||+|+++- |+.+. .-+.+.++.+.
T Consensus 134 ---------~~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~ 203 (251)
T TIGR03704 134 ---------GGTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAP 203 (251)
T ss_pred ---------CCEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHH
Confidence 024566777653210 1135799999872 33211 11346777788
Q ss_pred HhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCC
Q 015966 322 RILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYT 381 (397)
Q Consensus 322 ~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~ 381 (397)
++|||||+++- .++ .-..+++..++++.||+.......+. |+
T Consensus 204 ~~L~~gG~l~l----~~~-------------~~~~~~v~~~l~~~g~~~~~~~~~~~-~~ 245 (251)
T TIGR03704 204 DWLAPGGHLLV----ETS-------------ERQAPLAVEAFARAGLIARVASSEEL-YA 245 (251)
T ss_pred HhcCCCCEEEE----EEC-------------cchHHHHHHHHHHCCCCceeeEcccc-cc
Confidence 99999999883 111 11246899999999998766543333 54
No 91
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.94 E-value=8.9e-09 Score=105.35 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=79.7
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
..|.+++|.. ...+|||+|||+|.++..++++ +..|+++|.|+.|+..|+.-+.. +.
T Consensus 218 rllL~~lp~~---~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~----n~-------------- 276 (378)
T PRK15001 218 RFFMQHLPEN---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET----NM-------------- 276 (378)
T ss_pred HHHHHhCCcc---cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----cC--------------
Confidence 3455566642 3469999999999999999998 47899999999999887632210 00
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccC---ChhhHHHHHHHHHHhccCCc
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID---TAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFID---ta~Ni~~yi~~I~~~LKPGG 328 (397)
++ ...++.+..+|+.+.. ..++||+|+++ |... +..-..+.|+.++++|||||
T Consensus 277 -----------~~-------~~~~v~~~~~D~l~~~----~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG 334 (378)
T PRK15001 277 -----------PE-------ALDRCEFMINNALSGV----EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING 334 (378)
T ss_pred -----------cc-------cCceEEEEEccccccC----CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCC
Confidence 00 0012677778875422 13589999996 4321 22334688999999999999
Q ss_pred EEEEec
Q 015966 329 VWINLG 334 (397)
Q Consensus 329 ~wIN~G 334 (397)
.++-++
T Consensus 335 ~L~iV~ 340 (378)
T PRK15001 335 ELYIVA 340 (378)
T ss_pred EEEEEE
Confidence 988654
No 92
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.94 E-value=1e-08 Score=96.33 Aligned_cols=112 Identities=15% Similarity=0.062 Sum_probs=78.9
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccCcccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi 246 (397)
..+.+...+.+.+.. .++.+|||+|||+|.++..||++. -.|+|+|++..|+..++-.+...
T Consensus 60 ~~p~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~------------ 124 (212)
T PRK13942 60 SAIHMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL------------ 124 (212)
T ss_pred CcHHHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------------
Confidence 344555556555432 257799999999999999998873 58999999999998776433210
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccC
Q 015966 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (397)
Q Consensus 247 ~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKP 326 (397)
. ..++.++.||+.+.+. ..+.||+|+...... ++.+.+.+.|||
T Consensus 125 --------------g-------------~~~v~~~~gd~~~~~~---~~~~fD~I~~~~~~~------~~~~~l~~~Lkp 168 (212)
T PRK13942 125 --------------G-------------YDNVEVIVGDGTLGYE---ENAPYDRIYVTAAGP------DIPKPLIEQLKD 168 (212)
T ss_pred --------------C-------------CCCeEEEECCcccCCC---cCCCcCEEEECCCcc------cchHHHHHhhCC
Confidence 0 0136789999876543 247899998654332 334577889999
Q ss_pred CcEEEE
Q 015966 327 GGVWIN 332 (397)
Q Consensus 327 GG~wIN 332 (397)
||++|-
T Consensus 169 gG~lvi 174 (212)
T PRK13942 169 GGIMVI 174 (212)
T ss_pred CcEEEE
Confidence 999984
No 93
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.92 E-value=3.6e-08 Score=102.07 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=86.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..++..... + .
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~----~----------------------g----- 299 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD----L----------------------G----- 299 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------C-----
Confidence 3458999999999999999975 57899999999999887632210 0 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCCh------------------------hhHHHHHHHHH
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------------------------HNIVEYIEIIS 321 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta------------------------~Ni~~yi~~I~ 321 (397)
.++.++.+|+.+... + ..++||+|+++= |+.+. .-+.+.++.+.
T Consensus 300 ---------~rV~fi~gDl~e~~l-~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~ 368 (423)
T PRK14966 300 ---------ARVEFAHGSWFDTDM-P-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAP 368 (423)
T ss_pred ---------CcEEEEEcchhcccc-c-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHH
Confidence 126778889865321 1 135799999862 33221 11235566667
Q ss_pred HhccCCcEEEE-ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 322 RILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 322 ~~LKPGG~wIN-~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+.|||||.++- +|. --.+++++++++.||..++..
T Consensus 369 ~~LkpgG~lilEiG~------------------~Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 369 DRLAEGGFLLLEHGF------------------DQGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred HhcCCCcEEEEEECc------------------cHHHHHHHHHHHCCCcEEEEE
Confidence 89999999773 111 135789999999999866543
No 94
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.92 E-value=1.4e-08 Score=102.53 Aligned_cols=101 Identities=18% Similarity=0.153 Sum_probs=73.6
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
..+|||+|||+|.++..+++++ ..|+++|+|..|+..|+.-+.. + .+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~----n----------------------~l----- 245 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA----N----------------------GL----- 245 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------CC-----
Confidence 4589999999999999999985 4899999999999887632211 0 00
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-c---cCC-hhhHHHHHHHHHHhccCCcEEEEecC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F---IDT-AHNIVEYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-F---IDt-a~Ni~~yi~~I~~~LKPGG~wIN~GP 335 (397)
...+..+|+.+. ..+.||+|+++. | +++ .....+.|+.+.++|||||.++-+++
T Consensus 246 ---------~~~~~~~D~~~~-----~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 246 ---------EGEVFASNVFSD-----IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ---------CCEEEEcccccc-----cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 023455665442 147899999974 2 333 34567899999999999999985443
No 95
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.91 E-value=1.8e-08 Score=93.69 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=76.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
+.+...+.+.+.. .++.+||++|||+|.++..|++++..|+++|.|..|+..++-.+...
T Consensus 64 p~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~----------------- 123 (212)
T PRK00312 64 PYMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQL----------------- 123 (212)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHC-----------------
Confidence 3444555554432 25689999999999999999999779999999999987766332110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
.+ .++.+..+|+.+... ..+.||+|+....+ ..+.+.+.+.|||||++|
T Consensus 124 ---------~~-------------~~v~~~~~d~~~~~~---~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv 172 (212)
T PRK00312 124 ---------GL-------------HNVSVRHGDGWKGWP---AYAPFDRILVTAAA------PEIPRALLEQLKEGGILV 172 (212)
T ss_pred ---------CC-------------CceEEEECCcccCCC---cCCCcCEEEEccCc------hhhhHHHHHhcCCCcEEE
Confidence 00 126778888765332 24789999865422 233567789999999998
Q ss_pred E
Q 015966 332 N 332 (397)
Q Consensus 332 N 332 (397)
-
T Consensus 173 ~ 173 (212)
T PRK00312 173 A 173 (212)
T ss_pred E
Confidence 4
No 96
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.90 E-value=4.5e-08 Score=97.34 Aligned_cols=122 Identities=12% Similarity=0.175 Sum_probs=85.1
Q ss_pred CeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 191 PACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
.+|||+|||+|.++..||++ +..|+|+|+|..|+..|+..+...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~---------------------------------- 180 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH---------------------------------- 180 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----------------------------------
Confidence 68999999999999999987 568999999999998877322100
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCC------------------------hhhHHHHHHHHHHh
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------------------------AHNIVEYIEIISRI 323 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt------------------------a~Ni~~yi~~I~~~ 323 (397)
....++.++.+|+.+... .++||+|++.= |+.. ..-....++.+.++
T Consensus 181 ----~l~~~i~~~~~D~~~~l~----~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~ 252 (307)
T PRK11805 181 ----GLEDRVTLIESDLFAALP----GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDY 252 (307)
T ss_pred ----CCCCcEEEEECchhhhCC----CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHh
Confidence 001236788999866322 35799999861 1110 11234678889999
Q ss_pred ccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 324 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 324 LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
|||||+++- + +..+.+++.+++.+.||....
T Consensus 253 L~pgG~l~~--------E----------~g~~~~~~~~~~~~~~~~~~~ 283 (307)
T PRK11805 253 LTEDGVLVV--------E----------VGNSRVHLEEAYPDVPFTWLE 283 (307)
T ss_pred cCCCCEEEE--------E----------ECcCHHHHHHHHhhCCCEEEE
Confidence 999999883 0 112345688888888886654
No 97
>PHA03412 putative methyltransferase; Provisional
Probab=98.90 E-value=1.1e-08 Score=98.75 Aligned_cols=141 Identities=18% Similarity=0.160 Sum_probs=93.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 263 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-----Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~ 263 (397)
.+.+|||||||+|.++..++++ ...|+|+|++..|+..|+..+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------------------------------- 96 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------------------------------- 96 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------------------------------
Confidence 3579999999999999999874 358999999999998776211
Q ss_pred cCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCChh---------h-HHHHHHHHHHhccCCcEEE
Q 015966 264 IPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAH---------N-IVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 264 iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta~---------N-i~~yi~~I~~~LKPGG~wI 331 (397)
| ++.++.+||.... ..++||+||++ |+..... . ....++.+.++|+||+..+
T Consensus 97 -~-----------~~~~~~~D~~~~~----~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 97 -P-----------EATWINADALTTE----FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred -c-----------CCEEEEcchhccc----ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 0 1456778886532 14689999998 6622211 2 3457888889888887644
Q ss_pred --EecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCC
Q 015966 332 --NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYT 381 (397)
Q Consensus 332 --N~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~ 381 (397)
++.|.-|.+...+.. .-..+-.++++..++-|..+..-=.|+++|-
T Consensus 161 P~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (241)
T PHA03412 161 PQMSANFRYSGTHYFRQ----DESTTSSKCKKFLDETGLEMNPGCGIDTGYY 208 (241)
T ss_pred CcccccCcccCccceee----ccCcccHHHHHHHHhcCeeecCCCCccceee
Confidence 344444432211100 0125667888888898987765546666654
No 98
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.90 E-value=8.6e-09 Score=102.29 Aligned_cols=133 Identities=23% Similarity=0.286 Sum_probs=91.7
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
.-.++.|+++.. ++.+|||.|||+|-|+.--+++|. .|.|+|+++..+..|+.... .|
T Consensus 149 ~lcl~~l~~~~~-----~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~----~N------------ 207 (295)
T PF06325_consen 149 RLCLELLEKYVK-----PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAE----LN------------ 207 (295)
T ss_dssp HHHHHHHHHHSS-----TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHH----HT------------
T ss_pred HHHHHHHHHhcc-----CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHH----Hc------------
Confidence 346777877642 567999999999999999999998 59999999999887763211 01
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEE
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
.+. .++... ...+. ..++||+|+.+-.-+. +...+..+.++|||||++
T Consensus 208 ----------~~~------------~~~~v~--~~~~~-----~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~l 255 (295)
T PF06325_consen 208 ----------GVE------------DRIEVS--LSEDL-----VEGKFDLVVANILADV---LLELAPDIASLLKPGGYL 255 (295)
T ss_dssp ----------T-T------------TCEEES--CTSCT-----CCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEE
T ss_pred ----------CCC------------eeEEEE--Eeccc-----ccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEE
Confidence 000 112111 11111 1378999998766443 668899999999999999
Q ss_pred EEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 331 INLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 331 IN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
|--|= +.=-.+++++.+++ ||++++..
T Consensus 256 IlSGI----------------l~~~~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 256 ILSGI----------------LEEQEDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp EEEEE----------------EGGGHHHHHHHHHT-TEEEEEEE
T ss_pred EEccc----------------cHHHHHHHHHHHHC-CCEEEEEE
Confidence 96442 22345788888987 99998754
No 99
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.88 E-value=5e-08 Score=91.43 Aligned_cols=138 Identities=18% Similarity=0.184 Sum_probs=91.6
Q ss_pred CCCeEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.||||+|||.|.|...|.+ ++..++|+|++...+..+-
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv--------------------------------------- 53 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV--------------------------------------- 53 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH---------------------------------------
Confidence 577999999999999888866 7999999999998875321
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhc----
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL---- 343 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~---- 343 (397)
..+++.++||+.+-.. .+.+++||.|+-.--|....+....|+++ |+-|..-|-.=|.+=||...
T Consensus 54 -------~rGv~Viq~Dld~gL~-~f~d~sFD~VIlsqtLQ~~~~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~ 122 (193)
T PF07021_consen 54 -------ARGVSVIQGDLDEGLA-DFPDQSFDYVILSQTLQAVRRPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLL 122 (193)
T ss_pred -------HcCCCEEECCHHHhHh-hCCCCCccEEehHhHHHhHhHHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHH
Confidence 1246788899755211 13478999998755555555555566655 44455555211222233221
Q ss_pred -cCC-------------CCCccccCCHHHHHHHHHhCCCEEEEEeecC
Q 015966 344 -YGQ-------------EDEMSIELSLEDVKRVALHYGFEFEKEKTIE 377 (397)
Q Consensus 344 -~g~-------------~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~ 377 (397)
.|. .|+ -.-+|..|++++..+.|++|++.....
T Consensus 123 ~~GrmPvt~~lPy~WYdTPN-ih~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 123 LRGRMPVTKALPYEWYDTPN-IHLCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred hcCCCCCCCCCCCcccCCCC-cccccHHHHHHHHHHCCCEEEEEEEEc
Confidence 010 111 124699999999999999999876443
No 100
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.88 E-value=2.8e-08 Score=98.75 Aligned_cols=137 Identities=28% Similarity=0.304 Sum_probs=95.9
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
.-.+++|+++.. ++.+|||+|||+|-|+.-.+++|.. |.|+|+.+..+.+|+- |.. . |
T Consensus 150 ~lcL~~Le~~~~-----~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e--Na~-~-N------------ 208 (300)
T COG2264 150 SLCLEALEKLLK-----KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE--NAR-L-N------------ 208 (300)
T ss_pred HHHHHHHHHhhc-----CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH--HHH-H-c------------
Confidence 346677777653 6789999999999999999999996 9999999999988872 211 0 1
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEE
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
.+. .. ......+-.+.- ..+.||+||.+-. |+=+......|+++|||||++
T Consensus 209 ----------~v~--~~----------~~~~~~~~~~~~----~~~~~DvIVANIL---A~vl~~La~~~~~~lkpgg~l 259 (300)
T COG2264 209 ----------GVE--LL----------VQAKGFLLLEVP----ENGPFDVIVANIL---AEVLVELAPDIKRLLKPGGRL 259 (300)
T ss_pred ----------CCc--hh----------hhcccccchhhc----ccCcccEEEehhh---HHHHHHHHHHHHHHcCCCceE
Confidence 000 00 000111111111 1368999998863 444778999999999999999
Q ss_pred EEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 331 INLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 331 IN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
|--|=| .=-.+.+.+.+++.||++++..
T Consensus 260 IlSGIl----------------~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 260 ILSGIL----------------EDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred EEEeeh----------------HhHHHHHHHHHHhCCCeEeEEE
Confidence 975521 1126788899999999998854
No 101
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=98.85 E-value=5.9e-08 Score=91.75 Aligned_cols=166 Identities=20% Similarity=0.286 Sum_probs=105.7
Q ss_pred hHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHH-HHHHhhhhcccccCccc
Q 015966 165 TERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMM-ICSSFILNHTETAGEWN 241 (397)
Q Consensus 165 ~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML-~~s~fiLn~~~~~~~~~ 241 (397)
.||+. .||++.|++.++... .+||++|||||-.+..+|+. ...-|--|.....+ .+..++...
T Consensus 7 aeRNk--~pIl~vL~~~l~~~~----~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~-------- 72 (204)
T PF06080_consen 7 AERNK--DPILEVLKQYLPDSG----TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA-------- 72 (204)
T ss_pred hhhCH--hHHHHHHHHHhCccC----ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc--------
Confidence 45553 599999999998532 27999999999999999987 44556777777664 222222210
Q ss_pred cccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEeccccccc-CCCCCCCCccEEEEeec--cCChhhHHHHHH
Q 015966 242 IYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVY-SDPSQVGAWDAVVTCFF--IDTAHNIVEYIE 318 (397)
Q Consensus 242 IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely-~~~~~~~~fD~VvT~FF--IDta~Ni~~yi~ 318 (397)
...+..+++. +.+...+ -.+- ..+...+.||+|+|... |-.-......|+
T Consensus 73 ------------~~~Nv~~P~~--------------lDv~~~~-w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~ 125 (204)
T PF06080_consen 73 ------------GLPNVRPPLA--------------LDVSAPP-WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFA 125 (204)
T ss_pred ------------CCcccCCCeE--------------eecCCCC-CccccccccCCCCcceeeehhHHHhcCHHHHHHHHH
Confidence 0011111221 1111110 0000 00112478999998854 566667889999
Q ss_pred HHHHhccCCcEEEEecCCcchhhhc------cC-----CCCCcccc-CCHHHHHHHHHhCCCEEEEE
Q 015966 319 IISRILKDGGVWINLGPLLYHFADL------YG-----QEDEMSIE-LSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 319 ~I~~~LKPGG~wIN~GPLlYh~~d~------~g-----~~~~~~ie-LS~EEl~~ll~~~GFeii~e 373 (397)
.+.++|||||+++-.||..+.-.-. ++ ..| .+. -..|+|.+++.+.|+++++.
T Consensus 126 ~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp--~~GiRD~e~v~~lA~~~GL~l~~~ 190 (204)
T PF06080_consen 126 GAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDP--EWGIRDIEDVEALAAAHGLELEED 190 (204)
T ss_pred HHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCC--CcCccCHHHHHHHHHHCCCccCcc
Confidence 9999999999999999987742110 10 112 233 37899999999999998764
No 102
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.84 E-value=1.3e-08 Score=95.67 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=66.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..|++++ -.|+|+|+|. |. + +|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-------~-------------------------------~~ 91 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-------P-------------------------------IV 91 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-------C-------------------------------CC
Confidence 56799999999999999998873 4799999998 41 0 01
Q ss_pred CCCCCCCCCCCcceeEecccccccC-----CCCCCCCccEEEEee---ccC-Chhh-------HHHHHHHHHHhccCCcE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYS-----DPSQVGAWDAVVTCF---FID-TAHN-------IVEYIEIISRILKDGGV 329 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~-----~~~~~~~fD~VvT~F---FID-ta~N-------i~~yi~~I~~~LKPGG~ 329 (397)
++.+++||+.+... .+...+.||+|++.. +.. ...+ +...++.++++|||||.
T Consensus 92 -----------~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~ 160 (209)
T PRK11188 92 -----------GVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGS 160 (209)
T ss_pred -----------CcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 15678888876310 011247899999854 221 1111 24689999999999999
Q ss_pred EEE
Q 015966 330 WIN 332 (397)
Q Consensus 330 wIN 332 (397)
++-
T Consensus 161 ~vi 163 (209)
T PRK11188 161 FVV 163 (209)
T ss_pred EEE
Confidence 995
No 103
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.81 E-value=5.5e-08 Score=95.06 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=84.9
Q ss_pred CeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 191 PACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
.+|||+|||+|.++..||+.+ ..|+|+|+|..|+..|+..... +
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~----~------------------------------ 161 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEK----N------------------------------ 161 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c------------------------------
Confidence 689999999999999999874 5899999999999887732210 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCC------------------------hhhHHHHHHHHHHh
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------------------------AHNIVEYIEIISRI 323 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt------------------------a~Ni~~yi~~I~~~ 323 (397)
....++.++.+|+.+... .++||+||++= |+.+ ...+..+++.+.++
T Consensus 162 ----~~~~~v~~~~~d~~~~~~----~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~ 233 (284)
T TIGR00536 162 ----QLEHRVEFIQSNLFEPLA----GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDY 233 (284)
T ss_pred ----CCCCcEEEEECchhccCc----CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 001236788899876321 24799999861 2221 12355788999999
Q ss_pred ccCCcEEEE-ecCCcchhhhccCCCCCccccCCHHHHHHHHH-hCCCEEEEE
Q 015966 324 LKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVAL-HYGFEFEKE 373 (397)
Q Consensus 324 LKPGG~wIN-~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~-~~GFeii~e 373 (397)
|||||+++- +|+ --.+.+.+++. +.||..++.
T Consensus 234 L~~gG~l~~e~g~------------------~q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 234 LKPNGFLVCEIGN------------------WQQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred ccCCCEEEEEECc------------------cHHHHHHHHHHhcCCCceeEE
Confidence 999999873 221 12356777777 468865543
No 104
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=98.81 E-value=2.5e-08 Score=96.34 Aligned_cols=159 Identities=19% Similarity=0.293 Sum_probs=98.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
.++.+..++++.... ...+||++|||.|...+.|.+- +..|.+.|+|+..+..-+ ++... ..-..++|+
T Consensus 56 wL~~Efpel~~~~~~-~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk---~~~~~-~e~~~~afv-- 128 (264)
T KOG2361|consen 56 WLLREFPELLPVDEK-SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVK---KSSGY-DESRVEAFV-- 128 (264)
T ss_pred HHHHhhHHhhCcccc-ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHH---hcccc-chhhhcccc--
Confidence 355555555553321 3338999999999999999775 578999999998875332 11110 011111111
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEeccccc--ccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhc
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE--VYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRIL 324 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~e--ly~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~L 324 (397)
-|++. +-. +-..+++|+|+..|-|. ..+.....|+.++++|
T Consensus 129 ----------------------------------~Dlt~~~~~~-~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~ll 173 (264)
T KOG2361|consen 129 ----------------------------------WDLTSPSLKE-PPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLL 173 (264)
T ss_pred ----------------------------------eeccchhccC-CCCcCccceEEEEEEEeccChHHHHHHHHHHHHHh
Confidence 12221 111 22358999998777543 2345788999999999
Q ss_pred cCCcEEEE--ecC--C---cchhhhc-----c-CCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 325 KDGGVWIN--LGP--L---LYHFADL-----Y-GQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 325 KPGG~wIN--~GP--L---lYh~~d~-----~-g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
||||.++- +|- + -++-... + .++....+-++.|||..+++++||..+..
T Consensus 174 KPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 174 KPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred CCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcc
Confidence 99999993 221 1 1110000 0 01112357899999999999999987763
No 105
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.79 E-value=8.1e-08 Score=101.55 Aligned_cols=123 Identities=18% Similarity=0.183 Sum_probs=85.6
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
..+|||+|||+|.++..+|+. +..|+|+|+|..|+..|+..... +
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~----~----------------------------- 185 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIK----Y----------------------------- 185 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 468999999999999999875 67899999999999887732210 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCCh-------------------------hhHHHHHHHHH
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------------------------HNIVEYIEIIS 321 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta-------------------------~Ni~~yi~~I~ 321 (397)
....++.++.+|+.+... .++||+|+++- |+.+. .-+...++.+.
T Consensus 186 -----~l~~~v~~~~~D~~~~~~----~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~ 256 (506)
T PRK01544 186 -----EVTDRIQIIHSNWFENIE----KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAK 256 (506)
T ss_pred -----CCccceeeeecchhhhCc----CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHH
Confidence 001236778889766322 36899999852 22211 12334677888
Q ss_pred HhccCCcEEEE-ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 322 RILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 322 ~~LKPGG~wIN-~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
++|||||.++- +| .-..+.+.+++.+.||..++
T Consensus 257 ~~L~~gG~l~lEig------------------~~q~~~v~~~~~~~g~~~~~ 290 (506)
T PRK01544 257 QFLKPNGKIILEIG------------------FKQEEAVTQIFLDHGYNIES 290 (506)
T ss_pred HhccCCCEEEEEEC------------------CchHHHHHHHHHhcCCCceE
Confidence 99999999873 11 11356788899999998655
No 106
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.78 E-value=1.2e-08 Score=97.43 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=105.0
Q ss_pred cccc----cChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhh
Q 015966 158 DWAA----EGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 158 DWS~----eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiL 231 (397)
+|+. ..+.||.. |..+.|. ++|.. ...+|.|+|||+|..+..|+++ +..++|+|-|..||..|+-
T Consensus 2 ~W~p~~Yl~F~~eRtR---Pa~dLla-~Vp~~---~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-- 72 (257)
T COG4106 2 DWNPDQYLQFEDERTR---PARDLLA-RVPLE---RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-- 72 (257)
T ss_pred CCCHHHHHHHHHhccC---cHHHHHh-hCCcc---ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH--
Confidence 5665 45677764 4444443 34533 5679999999999999999999 7899999999999986651
Q ss_pred hcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChh
Q 015966 232 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH 311 (397)
Q Consensus 232 n~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~ 311 (397)
..|| .+|..||..++.. +...|+++.+--+.=.+
T Consensus 73 -------------------------------rlp~-----------~~f~~aDl~~w~p----~~~~dllfaNAvlqWlp 106 (257)
T COG4106 73 -------------------------------RLPD-----------ATFEEADLRTWKP----EQPTDLLFANAVLQWLP 106 (257)
T ss_pred -------------------------------hCCC-----------CceecccHhhcCC----CCccchhhhhhhhhhcc
Confidence 2233 5778899998753 46789998774322223
Q ss_pred hHHHHHHHHHHhccCCcEEEEecCCc----ch-----------hhhccCCCC-CccccCCHHHHHHHHHhCCCEEE
Q 015966 312 NIVEYIEIISRILKDGGVWINLGPLL----YH-----------FADLYGQED-EMSIELSLEDVKRVALHYGFEFE 371 (397)
Q Consensus 312 Ni~~yi~~I~~~LKPGG~wIN~GPLl----Yh-----------~~d~~g~~~-~~~ieLS~EEl~~ll~~~GFeii 371 (397)
+-.+.|......|.|||++----|-- .| |+...++.+ ...--+|...+-+++...+=++.
T Consensus 107 dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~~rvD 182 (257)
T COG4106 107 DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAPLACRVD 182 (257)
T ss_pred ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCcccceee
Confidence 34578999999999999998322211 11 111111111 01234688888888877655544
No 107
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.76 E-value=3.5e-08 Score=90.23 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=63.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..++++.. .|+|+|+|..| . +
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~--~---------------------------------- 71 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P--I---------------------------------- 71 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c--C----------------------------------
Confidence 678999999999999999988753 59999999854 0 0
Q ss_pred CCCCCCCCCCCcceeEecccccccC-----CCCCCCCccEEEEee--------ccCCh---hhHHHHHHHHHHhccCCcE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYS-----DPSQVGAWDAVVTCF--------FIDTA---HNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~-----~~~~~~~fD~VvT~F--------FIDta---~Ni~~yi~~I~~~LKPGG~ 329 (397)
.++.++.+|+.+... .....+.||+|++.. .++.. .++...++.++++|||||+
T Consensus 72 ----------~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 141 (188)
T TIGR00438 72 ----------ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGN 141 (188)
T ss_pred ----------CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCE
Confidence 013344555543210 001246799998632 12221 2346789999999999999
Q ss_pred EEE
Q 015966 330 WIN 332 (397)
Q Consensus 330 wIN 332 (397)
++-
T Consensus 142 lvi 144 (188)
T TIGR00438 142 FVV 144 (188)
T ss_pred EEE
Confidence 995
No 108
>PRK00811 spermidine synthase; Provisional
Probab=98.75 E-value=5.3e-08 Score=95.56 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=76.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+||++|||.|.++.+++++ +. .|+++|++..|+..|+--+.. .+ . . .
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~------------~~---~---------~--~-- 127 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPE------------IA---G---------G--A-- 127 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHH------------hc---c---------c--c--
Confidence 4569999999999999999987 54 799999999999877622210 00 0 0 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhH--HHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni--~~yi~~I~~~LKPGG~wIN 332 (397)
....++.++.+|..++.. ...++||+|+.-.+-. .+..+ .++++.++++|||||+++.
T Consensus 128 ------~~d~rv~v~~~Da~~~l~--~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 128 ------YDDPRVELVIGDGIKFVA--ETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred ------ccCCceEEEECchHHHHh--hCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 001247889999887532 2357899999754321 11122 5789999999999999995
No 109
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=98.75 E-value=5.7e-08 Score=92.25 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=77.3
Q ss_pred CCCeEEEecCCCChhHHHHH-HcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEIS-HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA-~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
.+..||++|||||+.--..- +.|-.|+++|-++.|-.++.. .+.++ ++..+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~k---s~~E~----------------------k~~~~--- 127 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADK---SAAEK----------------------KPLQV--- 127 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHH---HHhhc----------------------cCcce---
Confidence 46678999999999854443 468999999999999876652 11111 11110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
..|+.++-.++-.. .++++|+||+.|.|-..++..+.++.+.++|||||++|-
T Consensus 128 ----------~~fvva~ge~l~~l--~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 128 ----------ERFVVADGENLPQL--ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred ----------EEEEeechhcCccc--ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 23666665555322 368999999999998888999999999999999999994
No 110
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=98.74 E-value=4.8e-08 Score=87.82 Aligned_cols=95 Identities=22% Similarity=0.284 Sum_probs=64.6
Q ss_pred cceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE--ecCC-------cchhh-hc---
Q 015966 277 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN--LGPL-------LYHFA-DL--- 343 (397)
Q Consensus 277 ~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN--~GPL-------lYh~~-d~--- 343 (397)
++.++.||+.++ |..+++||+|++.|-+....|..+.+++++++|||||.++- +++. ++.|. ..
T Consensus 27 ~i~~~~~d~~~l---p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~ 103 (160)
T PLN02232 27 CIEWIEGDAIDL---PFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVV 103 (160)
T ss_pred ceEEEEechhhC---CCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHh
Confidence 378899998876 23467999999887666556788999999999999999973 2211 00000 00
Q ss_pred -----cCCCCC-----ccc--cCCHHHHHHHHHhCCCEEEEEe
Q 015966 344 -----YGQEDE-----MSI--ELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 344 -----~g~~~~-----~~i--eLS~EEl~~ll~~~GFeii~e~ 374 (397)
.+.... .++ -++.+|+.++++++||+.+..+
T Consensus 104 ~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 104 PVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred hhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 000000 011 2699999999999999977643
No 111
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.73 E-value=1.2e-07 Score=97.38 Aligned_cols=144 Identities=14% Similarity=0.105 Sum_probs=93.9
Q ss_pred CchhhHHHHHHHHHHhcccccChhHH----------hhchHHHHH--HHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH
Q 015966 142 LADVDKVRCIIRNIVRDWAAEGKTER----------DQCYKPILE--ELDALFPNRSKESPPACLVPGAGLGRLALEISH 209 (397)
Q Consensus 142 ~~d~dkv~stL~q~~RDWS~eG~~ER----------~~~y~pIl~--~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~ 209 (397)
+..+..++.+|..++--|-.+-..++ +..| +++ .+.+.+.. ..+..|||+|||+|+.+..+|+
T Consensus 68 p~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~---~~~p~vLEIGcGsG~~ll~lA~ 142 (390)
T PRK14121 68 PSKVGILKKALKIFSELFCADIISHNLAENSKKLSLKKPY--ILDIDNFLDFISK---NQEKILIEIGFGSGRHLLYQAK 142 (390)
T ss_pred ccchHHHHHHHHHHHHHhhccccccccccccccccccccc--cCCHHHHHHHhcC---CCCCeEEEEcCcccHHHHHHHH
Confidence 45567888888888877743211111 1111 222 23333322 2466999999999999999999
Q ss_pred c--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEeccccc
Q 015966 210 L--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE 287 (397)
Q Consensus 210 ~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~e 287 (397)
+ +..+.|+|++..|+..+.-- +... + -.++.++.+|..+
T Consensus 143 ~~P~~~~iGIEI~~~~i~~a~~k---a~~~-----------------------g-------------L~NV~~i~~DA~~ 183 (390)
T PRK14121 143 NNPNKLFIGIEIHTPSIEQVLKQ---IELL-----------------------N-------------LKNLLIINYDARL 183 (390)
T ss_pred hCCCCCEEEEECCHHHHHHHHHH---HHHc-----------------------C-------------CCcEEEEECCHHH
Confidence 8 57899999999998765411 1100 0 0237788999866
Q ss_pred ccCCCCCCCCccEEEEeeccCC-h--h--h--HHHHHHHHHHhccCCcEEE
Q 015966 288 VYSDPSQVGAWDAVVTCFFIDT-A--H--N--IVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 288 ly~~~~~~~~fD~VvT~FFIDt-a--~--N--i~~yi~~I~~~LKPGG~wI 331 (397)
+.. ...++++|.|+..| -|. . . . ..++++.++++|||||.|.
T Consensus 184 ll~-~~~~~s~D~I~lnF-PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~ 232 (390)
T PRK14121 184 LLE-LLPSNSVEKIFVHF-PVPWDKKPHRRVISEDFLNEALRVLKPGGTLE 232 (390)
T ss_pred hhh-hCCCCceeEEEEeC-CCCccccchhhccHHHHHHHHHHHcCCCcEEE
Confidence 432 12368999998765 332 0 0 0 1478999999999999988
No 112
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=98.73 E-value=2.1e-07 Score=88.52 Aligned_cols=144 Identities=19% Similarity=0.226 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHH
Q 015966 145 VDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 145 ~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML 224 (397)
++....-.++-+..|.... ..-|+++|.+. | +...|-|.|||-++||..+ ..++.|...|+-..
T Consensus 41 F~~YH~Gfr~Qv~~WP~nP-------vd~iI~~l~~~-~-----~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-- 104 (219)
T PF05148_consen 41 FDIYHEGFRQQVKKWPVNP-------VDVIIEWLKKR-P-----KSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-- 104 (219)
T ss_dssp HHHHHHHHHHHHCTSSS-H-------HHHHHHHHCTS-------TTS-EEEES-TT-HHHHH---S---EEEEESS-S--
T ss_pred HHHHHHHHHHHHhcCCCCc-------HHHHHHHHHhc-C-----CCEEEEECCCchHHHHHhc-ccCceEEEeeccCC--
Confidence 4556667788888998652 23466666642 2 4568999999999999664 35677877776430
Q ss_pred HHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe
Q 015966 225 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (397)
Q Consensus 225 ~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~ 304 (397)
| -.+++.|+..+- -.+++.|+||.|
T Consensus 105 -------n---------------------------------------------~~Vtacdia~vP---L~~~svDv~Vfc 129 (219)
T PF05148_consen 105 -------N---------------------------------------------PRVTACDIANVP---LEDESVDVAVFC 129 (219)
T ss_dssp -------S---------------------------------------------TTEEES-TTS-S-----TT-EEEEEEE
T ss_pred -------C---------------------------------------------CCEEEecCccCc---CCCCceeEEEEE
Confidence 0 124667887663 347899999999
Q ss_pred eccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 305 FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 305 FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.-|.- .|+.+||++.+|+|||||.+.-. | . .+-.-+.++..+.++++||++....
T Consensus 130 LSLMG-Tn~~~fi~EA~RvLK~~G~L~IA-------E-V------~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 130 LSLMG-TNWPDFIREANRVLKPGGILKIA-------E-V------KSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp S---S-S-HHHHHHHHHHHEEEEEEEEEE-------E-E------GGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred hhhhC-CCcHHHHHHHHheeccCcEEEEE-------E-e------cccCcCHHHHHHHHHHCCCeEEecc
Confidence 87764 47999999999999999988731 1 0 1223377899999999999998854
No 113
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.69 E-value=3.1e-08 Score=95.44 Aligned_cols=184 Identities=21% Similarity=0.255 Sum_probs=116.6
Q ss_pred HHHHHHhcccccChhHHhhchHHHHHHHHhhCCCC---CCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH
Q 015966 151 IIRNIVRDWAAEGKTERDQCYKPILEELDALFPNR---SKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC 226 (397)
Q Consensus 151 tL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~---~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~ 226 (397)
-+|.+-|||.+--..... ..+.+++-.++.+. ..+....++++|||+|.++.-|-..|. ..+-+|-|+.|+.-
T Consensus 34 ~~KR~qrdrAa~~~d~k~---dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s 110 (325)
T KOG2940|consen 34 DLKRIQRDRAAWLSDQKN---DYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKS 110 (325)
T ss_pred HHHHHHHhHHhhcchhhh---hHHHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHH
Confidence 577788998763322222 22333332222110 012456899999999999999999986 47889999999854
Q ss_pred HHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeec
Q 015966 227 SSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF 306 (397)
Q Consensus 227 s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FF 306 (397)
++ .++++ ++ .++...+| .|.. ++.++++|.|++..-
T Consensus 111 ~~----~~qdp-----------------------~i--------------~~~~~v~D-EE~L--df~ens~DLiisSls 146 (325)
T KOG2940|consen 111 CR----DAQDP-----------------------SI--------------ETSYFVGD-EEFL--DFKENSVDLIISSLS 146 (325)
T ss_pred hh----ccCCC-----------------------ce--------------EEEEEecc-hhcc--cccccchhhhhhhhh
Confidence 33 11110 11 15667777 3322 245789999998876
Q ss_pred cCChhhHHHHHHHHHHhccCCcEEEE--e-cCCcchhhh---------ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 307 IDTAHNIVEYIEIISRILKDGGVWIN--L-GPLLYHFAD---------LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 307 IDta~Ni~~yi~~I~~~LKPGG~wIN--~-GPLlYh~~d---------~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+.=..++...+..++..|||+|.||. + |.-||-..- .-|..|..+-.--..++-.++.++||......
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVD 226 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence 55445577899999999999999996 3 445554321 11222322212345788999999999988743
Q ss_pred --ecCCCCC
Q 015966 375 --TIETTYT 381 (397)
Q Consensus 375 --~i~~~Y~ 381 (397)
.+..+|-
T Consensus 227 tDEi~v~Yp 235 (325)
T KOG2940|consen 227 TDEIVVGYP 235 (325)
T ss_pred ccceeecCc
Confidence 3455554
No 114
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.68 E-value=1.2e-07 Score=85.33 Aligned_cols=96 Identities=15% Similarity=0.039 Sum_probs=65.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++.++++++..|+|+|++..|+..++-.+..
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~----------------------------------- 57 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA----------------------------------- 57 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc-----------------------------------
Confidence 456899999999999999999999999999999998765411100
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee--ccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F--FIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
..++.++.+|+.++-. ....||.|+++. .+. .+-+..+++. ..+.++|+++
T Consensus 58 ------~~~v~ii~~D~~~~~~---~~~~~d~vi~n~Py~~~-~~~i~~~l~~--~~~~~~~~l~ 110 (169)
T smart00650 58 ------ADNLTVIHGDALKFDL---PKLQPYKVVGNLPYNIS-TPILFKLLEE--PPAFRDAVLM 110 (169)
T ss_pred ------CCCEEEEECchhcCCc---cccCCCEEEECCCcccH-HHHHHHHHhc--CCCcceEEEE
Confidence 0136788999988632 234699999874 332 2223333332 1245777777
No 115
>PRK03612 spermidine synthase; Provisional
Probab=98.66 E-value=3.9e-07 Score=96.69 Aligned_cols=134 Identities=13% Similarity=0.114 Sum_probs=88.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+||++|||.|.++.++++.+ -+|+++|++..|+..++. +|+ +|.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~-------------~~~------------------l~~ 345 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELART-------------SPA------------------LRA 345 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHh-------------CCc------------------chh
Confidence 45799999999999999999885 489999999999987762 000 010
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh-----HHHHHHHHHHhccCCcEEEE-ecCCcchh
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-----IVEYIEIISRILKDGGVWIN-LGPLLYHF 340 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N-----i~~yi~~I~~~LKPGG~wIN-~GPLlYh~ 340 (397)
++... ...+++.++.+|.++... ...++||+|+..+.-...+. -.++++.+.++|||||+++- .++..++
T Consensus 346 ~~~~~-~~dprv~vi~~Da~~~l~--~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~- 421 (521)
T PRK03612 346 LNGGA-LDDPRVTVVNDDAFNWLR--KLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA- 421 (521)
T ss_pred hhccc-cCCCceEEEEChHHHHHH--hCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc-
Confidence 00000 001247889999887432 22478999998754222111 13689999999999999984 3332111
Q ss_pred hhccCCCCCccccCCHHHHHHHHHhCCCE
Q 015966 341 ADLYGQEDEMSIELSLEDVKRVALHYGFE 369 (397)
Q Consensus 341 ~d~~g~~~~~~ieLS~EEl~~ll~~~GFe 369 (397)
. -...++.+.+++.||.
T Consensus 422 ~------------~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 422 P------------KAFWSIEATLEAAGLA 438 (521)
T ss_pred h------------HHHHHHHHHHHHcCCE
Confidence 1 1125788888899993
No 116
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.66 E-value=2.2e-07 Score=90.30 Aligned_cols=122 Identities=14% Similarity=0.212 Sum_probs=81.7
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 247 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~ 247 (397)
.|..++..+.-.... ++.+||++|||+|.++.++++.+ -.|+++|++..|+..++-.+... +
T Consensus 57 ~y~e~l~~~~l~~~~----~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~------------~ 120 (270)
T TIGR00417 57 IYHEMIAHVPLFTHP----NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL------------A 120 (270)
T ss_pred HHHHHhhhhHhhcCC----CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh------------c
Confidence 455555554433221 34599999999999999998885 47999999999988766322100 0
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeec--cCChhh--HHHHHHHHHHh
Q 015966 248 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHN--IVEYIEIISRI 323 (397)
Q Consensus 248 ~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FF--IDta~N--i~~yi~~I~~~ 323 (397)
. .+. ..++.++.+|..++.. ...++||+|+.-.+ +....+ -.++++.+.++
T Consensus 121 ---~---------~~~-----------~~~v~i~~~D~~~~l~--~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~ 175 (270)
T TIGR00417 121 ---G---------SYD-----------DPRVDLQIDDGFKFLA--DTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKA 175 (270)
T ss_pred ---c---------ccc-----------CCceEEEECchHHHHH--hCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHH
Confidence 0 000 1236677788776432 12478999987543 333344 35889999999
Q ss_pred ccCCcEEEE
Q 015966 324 LKDGGVWIN 332 (397)
Q Consensus 324 LKPGG~wIN 332 (397)
|||||+++-
T Consensus 176 L~pgG~lv~ 184 (270)
T TIGR00417 176 LNEDGIFVA 184 (270)
T ss_pred hCCCcEEEE
Confidence 999999995
No 117
>PRK01581 speE spermidine synthase; Validated
Probab=98.66 E-value=2.7e-07 Score=94.23 Aligned_cols=144 Identities=17% Similarity=0.190 Sum_probs=93.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+||++|||+|..+.++.+.+ -.|+++|++..|+.+|+. +|+...+.. . +.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-------------~~~L~~~~~-~-------~~---- 204 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-------------VPELVSLNK-S-------AF---- 204 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-------------ccccchhcc-c-------cC----
Confidence 45699999999999999999875 589999999999988771 111110000 0 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC----hhhH--HHHHHHHHHhccCCcEEEEe-cCCcch
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT----AHNI--VEYIEIISRILKDGGVWINL-GPLLYH 339 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt----a~Ni--~~yi~~I~~~LKPGG~wIN~-GPLlYh 339 (397)
...++.++.+|..++.. ...++||+|+.-+. |. +..+ .++++.+++.|||||+++.- +...++
T Consensus 205 -------~DpRV~vvi~Da~~fL~--~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~ 274 (374)
T PRK01581 205 -------FDNRVNVHVCDAKEFLS--SPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADA 274 (374)
T ss_pred -------CCCceEEEECcHHHHHH--hcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhh
Confidence 12348889999887533 23578999987643 21 1122 46899999999999999862 111111
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCC
Q 015966 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 380 (397)
Q Consensus 340 ~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y 380 (397)
..-.-.+.+.++++||....-...-.+|
T Consensus 275 -------------~~~~~~i~~tL~~af~~v~~y~t~vPsy 302 (374)
T PRK01581 275 -------------PLVYWSIGNTIEHAGLTVKSYHTIVPSF 302 (374)
T ss_pred -------------HHHHHHHHHHHHHhCCceEEEEEecCCC
Confidence 0111236677888888776644434444
No 118
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.65 E-value=2e-07 Score=89.40 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=88.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
...-|||+|||+|--+-.|...|+...|+|+|+.||..|.- . .+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~--------~----------------------e~e----- 94 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE--------R----------------------ELE----- 94 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH--------h----------------------hhh-----
Confidence 46789999999999999999999999999999999987651 0 110
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-----------ccCChhhHHHHHHHHHHhccCCcEEEEecCCc
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-----------FIDTAHNIVEYIEIISRILKDGGVWINLGPLL 337 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-----------FIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLl 337 (397)
=.++.+||-+ +.|+..++||.|++.= +=++..-+..+|.+.+.+||+|+..+- .
T Consensus 95 ---------gdlil~DMG~--GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~----Q 159 (270)
T KOG1541|consen 95 ---------GDLILCDMGE--GLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL----Q 159 (270)
T ss_pred ---------cCeeeeecCC--CCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE----E
Confidence 1345677764 4467789999998752 112445577789999999999999993 2
Q ss_pred chhhhccCCCCCccccCCHHHHHHHHHhCCCE
Q 015966 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFE 369 (397)
Q Consensus 338 Yh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFe 369 (397)
|--+ .+=..|-|..-+.++||-
T Consensus 160 fYpe----------n~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 160 FYPE----------NEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eccc----------chHHHHHHHHHHHhhccC
Confidence 2111 123567777777788884
No 119
>PRK04457 spermidine synthase; Provisional
Probab=98.64 E-value=1.5e-07 Score=91.52 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=74.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+||++|||.|.++..+++. +-.++++|+++.|+..|+--.. .|.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-------------------------------~~~ 114 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFE-------------------------------LPE 114 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcC-------------------------------CCC
Confidence 3568999999999999999876 4679999999999987762110 000
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh----hhHHHHHHHHHHhccCCcEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA----HNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta----~Ni~~yi~~I~~~LKPGG~wI 331 (397)
...++.++.||+.++.. ...++||+|+.-.|-... ..-.++++.+.++|+|||+++
T Consensus 115 -------~~~rv~v~~~Da~~~l~--~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 115 -------NGERFEVIEADGAEYIA--VHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred -------CCCceEEEECCHHHHHH--hCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEE
Confidence 01247889999887543 224689999875542221 123589999999999999997
No 120
>PLN03075 nicotianamine synthase; Provisional
Probab=98.63 E-value=3.9e-07 Score=90.67 Aligned_cols=104 Identities=13% Similarity=0.190 Sum_probs=75.0
Q ss_pred CCCeEEEecCCCChh-HHHHHH-cC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 189 SPPACLVPGAGLGRL-ALEISH-LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL-a~eLA~-~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
.+.+||++|||-|.+ +.-+++ ++ -.++|+|.|..|+..|+-.....
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------------------------------ 172 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------------------------------ 172 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------------------------------
Confidence 568999999997765 444443 32 35999999999998887332100
Q ss_pred CCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC-hhhHHHHHHHHHHhccCCcEEEE
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-AHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-a~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
+ .+.+++.|..+|..++.. ..+.||+|++.-.++- +++-.++++.+++.|||||+++-
T Consensus 173 ~-------gL~~rV~F~~~Da~~~~~---~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 173 P-------DLSKRMFFHTADVMDVTE---SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLML 231 (296)
T ss_pred c-------CccCCcEEEECchhhccc---ccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEE
Confidence 0 123458999999888632 1468999988744442 35678999999999999999994
No 121
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.62 E-value=2.8e-07 Score=88.13 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=79.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
++..|.+.. +..+||++|||+|.-+..||+. +-.|+++|.+..++..|+-.+...
T Consensus 59 ~L~~l~~~~------~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~---------------- 116 (234)
T PLN02781 59 FLSMLVKIM------NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA---------------- 116 (234)
T ss_pred HHHHHHHHh------CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 555555543 4569999999999988888764 348999999999998877433211
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC--C-CCCCCccEEEEeeccCCh-hhHHHHHHHHHHhccC
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--P-SQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKD 326 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~--~-~~~~~fD~VvT~FFIDta-~Ni~~yi~~I~~~LKP 326 (397)
....++.++.||..++... + ...++||+| |+|.. ++..+|++.+.++|||
T Consensus 117 ----------------------gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V----fiDa~k~~y~~~~~~~~~ll~~ 170 (234)
T PLN02781 117 ----------------------GVDHKINFIQSDALSALDQLLNNDPKPEFDFA----FVDADKPNYVHFHEQLLKLVKV 170 (234)
T ss_pred ----------------------CCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE----EECCCHHHHHHHHHHHHHhcCC
Confidence 1112377888998775210 0 014689998 56754 5577999999999999
Q ss_pred CcEEEE
Q 015966 327 GGVWIN 332 (397)
Q Consensus 327 GG~wIN 332 (397)
||++|-
T Consensus 171 GG~ii~ 176 (234)
T PLN02781 171 GGIIAF 176 (234)
T ss_pred CeEEEE
Confidence 999883
No 122
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.62 E-value=3.5e-07 Score=94.18 Aligned_cols=125 Identities=10% Similarity=0.082 Sum_probs=85.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++...+..|. .|+++|.|..|+..++.-+.. + .+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~----N----------------------gl~---- 269 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL----N----------------------KLD---- 269 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------CCC----
Confidence 457999999999999998887776 799999999999877632210 0 000
Q ss_pred CCCCCCCCCcceeEecccccccCC-CCCCCCccEEEEe--eccCCh-------hhHHHHHHHHHHhccCCcEEEEecCCc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FFIDTA-------HNIVEYIEIISRILKDGGVWINLGPLL 337 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~-~~~~~~fD~VvT~--FFIDta-------~Ni~~yi~~I~~~LKPGG~wIN~GPLl 337 (397)
..++.++.||+.++... ....++||+|+.. +|.... .+..++++...++|||||+++-+.
T Consensus 270 -------~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s--- 339 (396)
T PRK15128 270 -------LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS--- 339 (396)
T ss_pred -------CCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe---
Confidence 01367899998875310 0123589999975 565443 235566778899999999999421
Q ss_pred chhhhccCCCCCccccCCHHHHHHHHHh
Q 015966 338 YHFADLYGQEDEMSIELSLEDVKRVALH 365 (397)
Q Consensus 338 Yh~~d~~g~~~~~~ieLS~EEl~~ll~~ 365 (397)
. +-.++.+++++++.+
T Consensus 340 ----c--------s~~~~~~~f~~~v~~ 355 (396)
T PRK15128 340 ----C--------SGLMTSDLFQKIIAD 355 (396)
T ss_pred ----C--------CCcCCHHHHHHHHHH
Confidence 1 234667777776653
No 123
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.61 E-value=4.2e-07 Score=91.28 Aligned_cols=110 Identities=17% Similarity=0.120 Sum_probs=74.0
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
+.++..+.+.+.. +++.+|||+|||+|.++..+|++.- .|+|+|+|..|+..|+..+...
T Consensus 66 p~l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~-------------- 128 (322)
T PRK13943 66 PSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL-------------- 128 (322)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc--------------
Confidence 3344555554432 2567999999999999999998642 5999999999998776332110
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCc
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG 328 (397)
+ ..++.++.||+.+... ..+.||+|+..+-+. ++ .+.+.+.|||||
T Consensus 129 ------------g-------------~~nV~~i~gD~~~~~~---~~~~fD~Ii~~~g~~---~i---p~~~~~~LkpgG 174 (322)
T PRK13943 129 ------------G-------------IENVIFVCGDGYYGVP---EFAPYDVIFVTVGVD---EV---PETWFTQLKEGG 174 (322)
T ss_pred ------------C-------------CCcEEEEeCChhhccc---ccCCccEEEECCchH---Hh---HHHHHHhcCCCC
Confidence 0 0125677888766432 235799998764332 23 345678999999
Q ss_pred EEEE
Q 015966 329 VWIN 332 (397)
Q Consensus 329 ~wIN 332 (397)
.++.
T Consensus 175 ~Lvv 178 (322)
T PRK13943 175 RVIV 178 (322)
T ss_pred EEEE
Confidence 9874
No 124
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.58 E-value=6.3e-08 Score=93.22 Aligned_cols=134 Identities=16% Similarity=0.143 Sum_probs=88.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
.-.++||+|||||-.+-.|-.+--..+|+|+|.-||..|. ++. +|-
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~-------eKg---~YD------------------------ 170 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAH-------EKG---LYD------------------------ 170 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHH-------hcc---chH------------------------
Confidence 3579999999999999999888889999999999997654 111 111
Q ss_pred CCCCCCCCcceeEecc---cccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe---cCCcchhhh
Q 015966 269 PASAGITEGFSMCGGD---FVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL---GPLLYHFAD 342 (397)
Q Consensus 269 p~~~~~~~~ls~~~GD---F~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~---GPLlYh~~d 342 (397)
.+.++| |.+.. ..+.||.|+..=.+.-.-++...+-.+...|+|||+|+-- +|=-+.|.-
T Consensus 171 ----------~L~~Aea~~Fl~~~----~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l 236 (287)
T COG4976 171 ----------TLYVAEAVLFLEDL----TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVL 236 (287)
T ss_pred ----------HHHHHHHHHHhhhc----cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeec
Confidence 112223 44321 2578999986422111223556788899999999999931 111111110
Q ss_pred ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 343 LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 343 ~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.|-..+-=+..-++.++...||+++..+
T Consensus 237 ----~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 237 ----GPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred ----chhhhhccchHHHHHHHHhcCceEEEee
Confidence 1111233477889999999999999854
No 125
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=98.55 E-value=8.8e-07 Score=84.53 Aligned_cols=139 Identities=17% Similarity=0.197 Sum_probs=89.2
Q ss_pred CCCeEEEecCCCChhHHHH-HHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEI-SHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eL-A~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
...++||-|||.||.+..| ...--.|.-+|.....+..|+--+.. . .. .
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~--~-------------------~~---~------ 104 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK--D-------------------NP---R------ 104 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC--G-------------------GC---C------
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc--c-------------------CC---C------
Confidence 5679999999999999866 55555799999999999877622110 0 00 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEE---EecCCcc-hhh
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWI---NLGPLLY-HFA 341 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wI---N~GPLlY-h~~ 341 (397)
--.+.+.-+.++.+ ..++||+|.+-..+- |-.++++||+.....|+|||+.| |+..--+ .|.
T Consensus 105 ---------v~~~~~~gLQ~f~P---~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D 172 (218)
T PF05891_consen 105 ---------VGEFYCVGLQDFTP---EEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFD 172 (218)
T ss_dssp ---------EEEEEES-GGG-------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEE
T ss_pred ---------cceEEecCHhhccC---CCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccC
Confidence 01223333344332 247999999886432 44679999999999999999998 6544222 111
Q ss_pred hccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 342 DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 342 d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
. ...|+--|.+.++++++++|+++++++
T Consensus 173 ~-----~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 173 E-----EDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp T-----TTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred C-----ccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 1 123778899999999999999999966
No 126
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.51 E-value=1.6e-06 Score=84.72 Aligned_cols=140 Identities=20% Similarity=0.196 Sum_probs=94.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
+..++||+|+|-|..+..+|..--+|.+.|.|..|-. .|+. +.| +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~----rL~~----kg~----------------------~----- 138 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRW----RLSK----KGF----------------------T----- 138 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHH----HHHh----CCC----------------------e-----
Confidence 5678999999999999999998889999999999953 2321 112 1
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE--ecCCcchhhhc-cC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN--LGPLLYHFADL-YG 345 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN--~GPLlYh~~d~-~g 345 (397)
.+ |..++.. ...+||+|.+..-||...+....++.|++.|||+|++|- +=|. -+|-+. .|
T Consensus 139 -----------vl--~~~~w~~---~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~-~pyVE~~~g 201 (265)
T PF05219_consen 139 -----------VL--DIDDWQQ---TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPF-RPYVEFGGG 201 (265)
T ss_pred -----------EE--ehhhhhc---cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecc-cccEEcCCC
Confidence 11 1122221 136899998888999999999999999999999999995 2221 123221 11
Q ss_pred C--CCC-------ccccCCHHHHHHHHHhCCCEEEEEeecCCCCCC
Q 015966 346 Q--EDE-------MSIELSLEDVKRVALHYGFEFEKEKTIETTYTT 382 (397)
Q Consensus 346 ~--~~~-------~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~ 382 (397)
. .|. .++|=..+-+..+++.+||+++.- ...+|+.
T Consensus 202 ~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~--tr~PYLc 245 (265)
T PF05219_consen 202 KSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERW--TRLPYLC 245 (265)
T ss_pred CCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEE--eccCccc
Confidence 1 111 122223344557889999998764 3456654
No 127
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.51 E-value=4.4e-07 Score=99.48 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=88.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|+.|.. |+++|+|..|+..++--+.. + ++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~----n----------------------g~~---- 587 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL----N----------------------GLS---- 587 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------CCC----
Confidence 4679999999999999999999974 99999999999877632210 0 000
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCC---------hhhHHHHHHHHHHhccCCcEEEEecCC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT---------AHNIVEYIEIISRILKDGGVWINLGPL 336 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt---------a~Ni~~yi~~I~~~LKPGG~wIN~GPL 336 (397)
..++.++.+|..++.. ...++||+|+.. +|... ..+..++++.+.++|||||+++-..-
T Consensus 588 -------~~~v~~i~~D~~~~l~--~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~- 657 (702)
T PRK11783 588 -------GRQHRLIQADCLAWLK--EAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN- 657 (702)
T ss_pred -------ccceEEEEccHHHHHH--HcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC-
Confidence 0137889999877532 114689999875 44321 23456678888999999999873210
Q ss_pred cchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 337 LYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 337 lYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
+-.++.+ .+++.+.||++...
T Consensus 658 --------------~~~~~~~--~~~~~~~g~~~~~i 678 (702)
T PRK11783 658 --------------KRGFKMD--EEGLAKLGLKAEEI 678 (702)
T ss_pred --------------CccCChh--HHHHHhCCCeEEEE
Confidence 0112222 66777889988764
No 128
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.49 E-value=1.1e-06 Score=90.99 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=84.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|..+..+++++ ..|+|+|+|..|+..++..+... ++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~--------------------------g~---- 293 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL--------------------------GL---- 293 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------CC----
Confidence 56799999999999999999885 48999999999998765322110 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE---ee------------ccCChhhH-------HHHHHHHHHhc
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF------------FIDTAHNI-------VEYIEIISRIL 324 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT---~F------------FIDta~Ni-------~~yi~~I~~~L 324 (397)
++.++.+|+.++... ...++||.|+. |+ +..+..++ .+.|+.+.++|
T Consensus 294 ----------~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~L 362 (427)
T PRK10901 294 ----------KATVIVGDARDPAQW-WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLL 362 (427)
T ss_pred ----------CeEEEEcCcccchhh-cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 135677887654210 11367999984 22 11233333 36799999999
Q ss_pred cCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHh-CCCEEEE
Q 015966 325 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALH-YGFEFEK 372 (397)
Q Consensus 325 KPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~-~GFeii~ 372 (397)
||||++|-.---++ .+=..+.+...+++ -+|+++.
T Consensus 363 kpGG~lvystcs~~-------------~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 363 KPGGTLLYATCSIL-------------PEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred CCCCEEEEEeCCCC-------------hhhCHHHHHHHHHhCCCCEEec
Confidence 99999983110011 12234667777765 4787665
No 129
>PLN02672 methionine S-methyltransferase
Probab=98.45 E-value=2.5e-06 Score=97.13 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=88.0
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+.+|||+|||+|.++..||+++ ..|+|+|+|..|+..|+.-+.. + ...... .+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~----n-------------~l~~~~------~~~~ 175 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL----N-------------ALDDDG------LPVY 175 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c-------------Cccccc------cccc
Confidence 4689999999999999999875 5899999999999888632211 0 000000 0000
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCCh------hh----------------------------
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------HN---------------------------- 312 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta------~N---------------------------- 312 (397)
.........++.++.+|+.+... ....+||+||++= ||.+. +.
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~~--~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG 253 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYCR--DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG 253 (1082)
T ss_pred ccccccccccEEEEECchhhhcc--ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence 00000112348899999877432 1123799999982 33211 11
Q ss_pred ---HHHHHHHHHHhccCCcEEEE-ecCCcchhhhccCCCCCccccCCHHHHH-HHHHhCCCEEEEEe
Q 015966 313 ---IVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVK-RVALHYGFEFEKEK 374 (397)
Q Consensus 313 ---i~~yi~~I~~~LKPGG~wIN-~GPLlYh~~d~~g~~~~~~ieLS~EEl~-~ll~~~GFeii~e~ 374 (397)
+.+.++...++|||||+++- +|. --.+.+. +++++.||+..+.+
T Consensus 254 L~~yr~i~~~a~~~L~pgG~l~lEiG~------------------~q~~~v~~~l~~~~gf~~~~~~ 302 (1082)
T PLN02672 254 LGLIARAVEEGISVIKPMGIMIFNMGG------------------RPGQAVCERLFERRGFRITKLW 302 (1082)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEECc------------------cHHHHHHHHHHHHCCCCeeEEe
Confidence 12345666689999998872 331 1134677 68999999987754
No 130
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.43 E-value=1.6e-06 Score=90.16 Aligned_cols=100 Identities=16% Similarity=0.095 Sum_probs=70.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..+|++ +..|+|+|+|..|+..++-.++.. ++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--------------------------g~--- 300 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL--------------------------GI--- 300 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--------------------------CC---
Confidence 5679999999999998888764 458999999999998765322110 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE---e----e--------ccCChhhH-------HHHHHHHHHh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---C----F--------FIDTAHNI-------VEYIEIISRI 323 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT---~----F--------FIDta~Ni-------~~yi~~I~~~ 323 (397)
.++.++.+|+.++.. .+.||+|+. | . +..+..++ .+.|+.++++
T Consensus 301 ----------~~v~~~~~Da~~~~~----~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 366 (445)
T PRK14904 301 ----------TIIETIEGDARSFSP----EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL 366 (445)
T ss_pred ----------CeEEEEeCccccccc----CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 125678888877532 468999984 1 1 11222333 2579999999
Q ss_pred ccCCcEEE
Q 015966 324 LKDGGVWI 331 (397)
Q Consensus 324 LKPGG~wI 331 (397)
|||||++|
T Consensus 367 lkpgG~lv 374 (445)
T PRK14904 367 LKPGGVLV 374 (445)
T ss_pred cCCCcEEE
Confidence 99999999
No 131
>PLN02366 spermidine synthase
Probab=98.43 E-value=2.3e-06 Score=85.49 Aligned_cols=108 Identities=23% Similarity=0.235 Sum_probs=75.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+||++|||.|.++.++++.. -.|+.+|++..|+..|+--+ |.++ . .
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f------------~~~~---~---------~----- 141 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFF------------PDLA---V---------G----- 141 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhh------------hhhc---c---------c-----
Confidence 46799999999999999999984 37999999999998776221 1000 0 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--Chhh--HHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHN--IVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~N--i~~yi~~I~~~LKPGG~wIN 332 (397)
....++.++.+|.+++... ...++||+|+.-.+-. .+.. -.++++.++++|+|||+++.
T Consensus 142 ------~~dpRv~vi~~Da~~~l~~-~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 142 ------FDDPRVNLHIGDGVEFLKN-APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred ------cCCCceEEEEChHHHHHhh-ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 0123588999998765321 1146899998744321 1111 24789999999999999985
No 132
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.41 E-value=1.1e-06 Score=91.77 Aligned_cols=115 Identities=23% Similarity=0.204 Sum_probs=79.3
Q ss_pred HHHHHHhhCCCCCCC-CCCeEEEecCCCChhHHHHHHcC------CeEEEEeCCHHHHHHHHhhhhcccccCcccccccc
Q 015966 174 ILEELDALFPNRSKE-SPPACLVPGAGLGRLALEISHLG------FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (397)
Q Consensus 174 Il~~L~~~~p~~~~~-~~~rVLvPGCGlGRLa~eLA~~G------f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi 246 (397)
|.++|.+........ +...|||+|||+|-|+...++.| ..|.++|-+..+..+.+.+.+. +.
T Consensus 170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~----n~------- 238 (448)
T PF05185_consen 170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA----NG------- 238 (448)
T ss_dssp HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH----TT-------
T ss_pred HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh----cC-------
Confidence 445555554432111 35789999999999998888877 6899999998777655433221 11
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHh
Q 015966 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRI 323 (397)
Q Consensus 247 ~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~ 323 (397)
..+.+.++.||++++.. .++.|+||+= .|.+.. -..+.|....+.
T Consensus 239 ---------------------------w~~~V~vi~~d~r~v~l----pekvDIIVSElLGsfg~nE-l~pE~Lda~~rf 286 (448)
T PF05185_consen 239 ---------------------------WGDKVTVIHGDMREVEL----PEKVDIIVSELLGSFGDNE-LSPECLDAADRF 286 (448)
T ss_dssp ---------------------------TTTTEEEEES-TTTSCH----SS-EEEEEE---BTTBTTT-SHHHHHHHGGGG
T ss_pred ---------------------------CCCeEEEEeCcccCCCC----CCceeEEEEeccCCccccc-cCHHHHHHHHhh
Confidence 12347889999999854 3689999986 477764 466889999999
Q ss_pred ccCCcEEE
Q 015966 324 LKDGGVWI 331 (397)
Q Consensus 324 LKPGG~wI 331 (397)
|||||+.|
T Consensus 287 Lkp~Gi~I 294 (448)
T PF05185_consen 287 LKPDGIMI 294 (448)
T ss_dssp EEEEEEEE
T ss_pred cCCCCEEe
Confidence 99999999
No 133
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=7.6e-06 Score=80.62 Aligned_cols=119 Identities=24% Similarity=0.252 Sum_probs=82.4
Q ss_pred eEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCC
Q 015966 192 ACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p 269 (397)
+|||+|||+|-+|.-||+.+- .|+|+|+|...|.+|+- |.. . + .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~--Na~-~-~----------------------~-------- 158 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARE--NAE-R-N----------------------G-------- 158 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHH--HHH-H-c----------------------C--------
Confidence 799999999999999999986 89999999999998872 211 0 0 0
Q ss_pred CCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCCh------------------------hhHHHHHHHHHHhc
Q 015966 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------------------------HNIVEYIEIISRIL 324 (397)
Q Consensus 270 ~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta------------------------~Ni~~yi~~I~~~L 324 (397)
. .++..+.+|+++-. .++||+||++= ||+.. .-+...++.+.+.|
T Consensus 159 ----l-~~~~~~~~dlf~~~-----~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l 228 (280)
T COG2890 159 ----L-VRVLVVQSDLFEPL-----RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDIL 228 (280)
T ss_pred ----C-ccEEEEeeeccccc-----CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHc
Confidence 0 12445555655432 35899998872 33332 12345677788999
Q ss_pred cCCcEEEEecCCcchhhhccCCCCCcccc-CCHHHHHHHHHhCC-CEEEE
Q 015966 325 KDGGVWINLGPLLYHFADLYGQEDEMSIE-LSLEDVKRVALHYG-FEFEK 372 (397)
Q Consensus 325 KPGG~wIN~GPLlYh~~d~~g~~~~~~ie-LS~EEl~~ll~~~G-Feii~ 372 (397)
+|||+++- + +. -..+.+++++.+.| |..+.
T Consensus 229 ~~~g~l~l--------e----------~g~~q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 229 KPGGVLIL--------E----------IGLTQGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred CCCcEEEE--------E----------ECCCcHHHHHHHHHhcCCceEEE
Confidence 99998883 0 11 23678999999999 55444
No 134
>PRK04148 hypothetical protein; Provisional
Probab=98.40 E-value=2.7e-06 Score=75.71 Aligned_cols=100 Identities=11% Similarity=0.089 Sum_probs=73.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCCh-hHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGR-LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGR-La~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
.|-++|.++++.. ++.+|||+|||.|. +|..|+++|++|+|+|+++..+..++ +
T Consensus 3 ~i~~~l~~~~~~~---~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~-------~--------------- 57 (134)
T PRK04148 3 TIAEFIAENYEKG---KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAK-------K--------------- 57 (134)
T ss_pred HHHHHHHHhcccc---cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHH-------H---------------
Confidence 4677888888753 45799999999996 99999999999999999999764332 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccC
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKP 326 (397)
..+..+.+|.++.- ++-.+.+|+|.+ |-..+.++..+-.+++-++-
T Consensus 58 ------------------------~~~~~v~dDlf~p~--~~~y~~a~liys---irpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 58 ------------------------LGLNAFVDDLFNPN--LEIYKNAKLIYS---IRPPRDLQPFILELAKKINV 103 (134)
T ss_pred ------------------------hCCeEEECcCCCCC--HHHHhcCCEEEE---eCCCHHHHHHHHHHHHHcCC
Confidence 01345667776531 122357899977 67778888888888886653
No 135
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.40 E-value=1.8e-06 Score=83.57 Aligned_cols=151 Identities=23% Similarity=0.261 Sum_probs=102.4
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
|+.+.+.+. .....+++.+|||-.-|+|..|.+-+++|. .|..+|-.+.-|..| ++-||-+
T Consensus 119 P~~Dt~~Kv-~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa-------------~lNPwSr---- 180 (287)
T COG2521 119 PLEDTLAKV-ELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELA-------------KLNPWSR---- 180 (287)
T ss_pred cHHHHHhhh-heeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEee-------------ccCCCCc----
Confidence 455555542 111224688999999999999999999999 999999999877543 2445522
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHhccCCc
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~LKPGG 328 (397)
+ +.. ..+.++.||..++-. ...+++||+|+-- |-+.+.---.++.++++++|||||
T Consensus 181 ----~--l~~--------------~~i~iilGD~~e~V~-~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgG 239 (287)
T COG2521 181 ----E--LFE--------------IAIKIILGDAYEVVK-DFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGG 239 (287)
T ss_pred ----c--ccc--------------cccEEecccHHHHHh-cCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCC
Confidence 1 111 127789999888643 2457889999853 545554334578999999999999
Q ss_pred EEEEecCCcchhhhccCCCCCccccCC-HHHHHHHHHhCCCEEEE
Q 015966 329 VWINLGPLLYHFADLYGQEDEMSIELS-LEDVKRVALHYGFEFEK 372 (397)
Q Consensus 329 ~wIN~GPLlYh~~d~~g~~~~~~ieLS-~EEl~~ll~~~GFeii~ 372 (397)
.+. ||-..+|. ..-.+. .-.+.+.|+++||+.++
T Consensus 240 rlF-------HYvG~Pg~---ryrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 240 RLF-------HYVGNPGK---RYRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred cEE-------EEeCCCCc---ccccCChhHHHHHHHHhcCceeee
Confidence 876 44432221 111222 35778889999999766
No 136
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=98.39 E-value=5.9e-06 Score=85.79 Aligned_cols=136 Identities=15% Similarity=0.229 Sum_probs=85.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..||+.+..|+|+|+|..|+..|+..+.. + .
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~----~----------------------~------- 343 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARR----N----------------------G------- 343 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH----c----------------------C-------
Confidence 457999999999999999999999999999999999887732210 0 0
Q ss_pred CCCCCCCCcceeEecccccccC-CCCCCCCccEEEEeeccCChh-hHHHHHHHHHHhccCCcE-EEEecCCcchhhhccC
Q 015966 269 PASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAH-NIVEYIEIISRILKDGGV-WINLGPLLYHFADLYG 345 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~-Ni~~yi~~I~~~LKPGG~-wIN~GPLlYh~~d~~g 345 (397)
..++.+.++|+.+... .+...++||+|+. |... .+.+.++.+.+ |+|+++ +|...|...
T Consensus 344 ------~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~----dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tl------- 405 (443)
T PRK13168 344 ------LDNVTFYHANLEEDFTDQPWALGGFDKVLL----DPPRAGAAEVMQALAK-LGPKRIVYVSCNPATL------- 405 (443)
T ss_pred ------CCceEEEEeChHHhhhhhhhhcCCCCEEEE----CcCCcChHHHHHHHHh-cCCCeEEEEEeChHHh-------
Confidence 0126788899866421 1112357999964 4332 13455666666 466655 445555321
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEeec-CCCCCCCccc
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEKTI-ETTYTTNPRS 386 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i-~~~Y~~d~~s 386 (397)
.-|+..+ .+.||++.+-... -=++|..-++
T Consensus 406 ----------aRDl~~L-~~~gY~l~~i~~~DmFP~T~HvE~ 436 (443)
T PRK13168 406 ----------ARDAGVL-VEAGYRLKRAGMLDMFPHTGHVES 436 (443)
T ss_pred ----------hccHHHH-hhCCcEEEEEEEeccCCCCCcEEE
Confidence 1233333 3569999986633 2334434333
No 137
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.37 E-value=7.3e-06 Score=76.65 Aligned_cols=122 Identities=21% Similarity=0.171 Sum_probs=89.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 188 ESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
+++.+++|+|||+|.++.|+|..|. +|+++|-...++...+. |.. .+.
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~--N~~--------------------------~fg-- 82 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER--NAA--------------------------RFG-- 82 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHH--HHH--------------------------HhC--
Confidence 4778999999999999999996664 79999999999876552 211 001
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE-ecCCcchhhhcc
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLY 344 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN-~GPLlYh~~d~~ 344 (397)
.+++.++.||.-+... ...++|+| ||--..++.+.|+.....|||||.+|- .--
T Consensus 83 ---------~~n~~vv~g~Ap~~L~---~~~~~dai----FIGGg~~i~~ile~~~~~l~~ggrlV~nait--------- 137 (187)
T COG2242 83 ---------VDNLEVVEGDAPEALP---DLPSPDAI----FIGGGGNIEEILEAAWERLKPGGRLVANAIT--------- 137 (187)
T ss_pred ---------CCcEEEEeccchHhhc---CCCCCCEE----EECCCCCHHHHHHHHHHHcCcCCeEEEEeec---------
Confidence 1347889999877543 12379988 566568899999999999999999993 110
Q ss_pred CCCCCccccCCHHHHHHHHHhCCC-EEEE
Q 015966 345 GQEDEMSIELSLEDVKRVALHYGF-EFEK 372 (397)
Q Consensus 345 g~~~~~~ieLS~EEl~~ll~~~GF-eii~ 372 (397)
.=+.-.+.+.+++.|| +++.
T Consensus 138 --------lE~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 138 --------LETLAKALEALEQLGGREIVQ 158 (187)
T ss_pred --------HHHHHHHHHHHHHcCCceEEE
Confidence 1134455667788999 6665
No 138
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.37 E-value=1.9e-06 Score=81.45 Aligned_cols=111 Identities=27% Similarity=0.326 Sum_probs=81.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
++..|.+.. +..+||++|+|+|.-+..||+. +-.|+.+|.+..+...|+-.+.++
T Consensus 36 lL~~l~~~~------~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a---------------- 93 (205)
T PF01596_consen 36 LLQMLVRLT------RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA---------------- 93 (205)
T ss_dssp HHHHHHHHH------T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHhc------CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc----------------
Confidence 566665543 4569999999999999999975 568999999999998887554332
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC---CCCCCCccEEEEeeccCCh-hhHHHHHHHHHHhccC
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKD 326 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~---~~~~~~fD~VvT~FFIDta-~Ni~~yi~~I~~~LKP 326 (397)
+...++.++.||..++... ....++||.| |||.. .+-.+|++.+.++|+|
T Consensus 94 ----------------------g~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V----FiDa~K~~y~~y~~~~~~ll~~ 147 (205)
T PF01596_consen 94 ----------------------GLDDRIEVIEGDALEVLPELANDGEEGQFDFV----FIDADKRNYLEYFEKALPLLRP 147 (205)
T ss_dssp ----------------------TGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE----EEESTGGGHHHHHHHHHHHEEE
T ss_pred ----------------------CCCCcEEEEEeccHhhHHHHHhccCCCceeEE----EEcccccchhhHHHHHhhhccC
Confidence 1123478899998875320 0113689998 67755 4577899999999999
Q ss_pred CcEEEE
Q 015966 327 GGVWIN 332 (397)
Q Consensus 327 GG~wIN 332 (397)
||+.|-
T Consensus 148 ggvii~ 153 (205)
T PF01596_consen 148 GGVIIA 153 (205)
T ss_dssp EEEEEE
T ss_pred CeEEEE
Confidence 999994
No 139
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.36 E-value=4.7e-06 Score=81.70 Aligned_cols=141 Identities=18% Similarity=0.253 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHH
Q 015966 145 VDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 145 ~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML 224 (397)
++-...-.++-|.-|.... ...|+..|..+ | ...-|-|.|||-++||. ..-..|...|+-.
T Consensus 149 fdlYH~gfr~QV~kWP~nP-------ld~ii~~ik~r-~-----~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a--- 209 (325)
T KOG3045|consen 149 FDLYHAGFRSQVKKWPENP-------LDVIIRKIKRR-P-----KNIVIADFGCGEAKIAS---SERHKVHSFDLVA--- 209 (325)
T ss_pred HHHHHHHHHHHHHhCCCCh-------HHHHHHHHHhC-c-----CceEEEecccchhhhhh---ccccceeeeeeec---
Confidence 4444455566677788652 23477777764 2 45678899999999975 2222333333211
Q ss_pred HHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe
Q 015966 225 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (397)
Q Consensus 225 ~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~ 304 (397)
.+=.+++.||+.+- -.+++.|++|.|
T Consensus 210 ---------------------------------------------------~~~~V~~cDm~~vP---l~d~svDvaV~C 235 (325)
T KOG3045|consen 210 ---------------------------------------------------VNERVIACDMRNVP---LEDESVDVAVFC 235 (325)
T ss_pred ---------------------------------------------------CCCceeeccccCCc---CccCcccEEEee
Confidence 01234678988863 357999999999
Q ss_pred eccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 305 FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 305 FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
.-|.- .|+.++|++++++|||||+|-- ..+ .+-.-+.-.+.+.++++||++.+.
T Consensus 236 LSLMg-tn~~df~kEa~RiLk~gG~l~I-AEv-------------~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 236 LSLMG-TNLADFIKEANRILKPGGLLYI-AEV-------------KSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred Hhhhc-ccHHHHHHHHHHHhccCceEEE-Eeh-------------hhhcccHHHHHHHHHHcCCeeeeh
Confidence 87664 4799999999999999998652 011 123345566889999999999874
No 140
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.36 E-value=3.7e-06 Score=79.67 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHhcccccCh--------------hHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-
Q 015966 146 DKVRCIIRNIVRDWAAEGK--------------TERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL- 210 (397)
Q Consensus 146 dkv~stL~q~~RDWS~eG~--------------~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~- 210 (397)
..|..+++.+-|++--... .++..+-+.+...+.+.+.- +++.+||++|||+|.++.-||.+
T Consensus 18 ~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lv 94 (209)
T PF01135_consen 18 PRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLV 94 (209)
T ss_dssp HHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhc
Confidence 5677888888887643211 11222334566666666542 37889999999999999999988
Q ss_pred C--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccc
Q 015966 211 G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV 288 (397)
Q Consensus 211 G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~el 288 (397)
| ..|.++|....++..|+-.|.... ..++.++.||...-
T Consensus 95 g~~g~Vv~vE~~~~l~~~A~~~l~~~~---------------------------------------~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 95 GPVGRVVSVERDPELAERARRNLARLG---------------------------------------IDNVEVVVGDGSEG 135 (209)
T ss_dssp STTEEEEEEESBHHHHHHHHHHHHHHT---------------------------------------THSEEEEES-GGGT
T ss_pred CccceEEEECccHHHHHHHHHHHHHhc---------------------------------------cCceeEEEcchhhc
Confidence 4 369999999999988875553210 01377899997654
Q ss_pred cCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE-ec
Q 015966 289 YSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LG 334 (397)
Q Consensus 289 y~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN-~G 334 (397)
+. ....||+|+...-....+ ..+.+.||+||++|- ++
T Consensus 136 ~~---~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 136 WP---EEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TG---GG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred cc---cCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 32 357899999876655433 345667999999996 45
No 141
>PLN02476 O-methyltransferase
Probab=98.33 E-value=4.5e-06 Score=82.46 Aligned_cols=117 Identities=17% Similarity=0.291 Sum_probs=83.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
++..|.+.. +..+||++|+|+|.-+..+|+. +-.|+++|.+..++..|+-.+.++
T Consensus 109 lL~~L~~~~------~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a---------------- 166 (278)
T PLN02476 109 LLAMLVQIL------GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA---------------- 166 (278)
T ss_pred HHHHHHHhc------CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 555555543 4579999999999999999973 346999999999998877433221
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC---CCCCCCccEEEEeeccCCh-hhHHHHHHHHHHhccC
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKD 326 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~---~~~~~~fD~VvT~FFIDta-~Ni~~yi~~I~~~LKP 326 (397)
+...++.++.||..++... ....++||+| |||.. .+-.+|++.+.++|||
T Consensus 167 ----------------------Gl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V----FIDa~K~~Y~~y~e~~l~lL~~ 220 (278)
T PLN02476 167 ----------------------GVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA----FVDADKRMYQDYFELLLQLVRV 220 (278)
T ss_pred ----------------------CCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE----EECCCHHHHHHHHHHHHHhcCC
Confidence 1123478889998775320 0013689977 67865 4578999999999999
Q ss_pred CcEEEEecCCcch
Q 015966 327 GGVWINLGPLLYH 339 (397)
Q Consensus 327 GG~wIN~GPLlYh 339 (397)
||++|- -..+|+
T Consensus 221 GGvIV~-DNvL~~ 232 (278)
T PLN02476 221 GGVIVM-DNVLWH 232 (278)
T ss_pred CcEEEE-ecCccC
Confidence 999983 335564
No 142
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.33 E-value=2.9e-06 Score=79.57 Aligned_cols=127 Identities=19% Similarity=0.193 Sum_probs=82.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
.+.+|||+|||||+|+.-.+-+| ..|.|+|+...++.+++-..+ +
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~---~------------------------------- 90 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAE---E------------------------------- 90 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHH---h-------------------------------
Confidence 56689999999999999999999 689999999999998772211 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--e--ccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F--FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL 343 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--F--FIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~ 343 (397)
...++.++.+|..++. ..+|.|+++ | -.-.+ | ..++....++- -..|....
T Consensus 91 ------l~g~v~f~~~dv~~~~------~~~dtvimNPPFG~~~rha-D-r~Fl~~Ale~s----------~vVYsiH~- 145 (198)
T COG2263 91 ------LLGDVEFVVADVSDFR------GKFDTVIMNPPFGSQRRHA-D-RPFLLKALEIS----------DVVYSIHK- 145 (198)
T ss_pred ------hCCceEEEEcchhhcC------CccceEEECCCCccccccC-C-HHHHHHHHHhh----------heEEEeec-
Confidence 1234788999987763 578888876 3 11111 1 12222222211 12232111
Q ss_pred cCCCCCccccCCHHHHHHHHHhCCCEEEEEe----ecCCCCCCC
Q 015966 344 YGQEDEMSIELSLEDVKRVALHYGFEFEKEK----TIETTYTTN 383 (397)
Q Consensus 344 ~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~----~i~~~Y~~d 383 (397)
--+.+-+++.....||++.... .+...|...
T Consensus 146 ---------a~~~~f~~~~~~~~G~~v~~~~~~~~~iP~~y~fH 180 (198)
T COG2263 146 ---------AGSRDFVEKFAADLGGTVTHIERARFPIPRTYPFH 180 (198)
T ss_pred ---------cccHHHHHHHHHhcCCeEEEEEEEEEecCccCchh
Confidence 1278899999999999988743 345555433
No 143
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.32 E-value=3.1e-06 Score=87.98 Aligned_cols=102 Identities=12% Similarity=0.102 Sum_probs=70.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..+|.+ +..|+|+|+|..||..++-.+... ++
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~--------------------------g~--- 287 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL--------------------------KL--- 287 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------CC---
Confidence 5679999999999999998886 568999999999998766332211 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE---ee---ccCChh---------hH-------HHHHHHHHHh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FIDTAH---------NI-------VEYIEIISRI 323 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT---~F---FIDta~---------Ni-------~~yi~~I~~~ 323 (397)
.++.+..+|..++.. ...++||.|+. |. .+...+ ++ .+.|+.+++.
T Consensus 288 ----------~~v~~~~~Da~~l~~--~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 355 (431)
T PRK14903 288 ----------SSIEIKIADAERLTE--YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKL 355 (431)
T ss_pred ----------CeEEEEECchhhhhh--hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 125677788766421 12467999985 21 121111 22 3568999999
Q ss_pred ccCCcEEE
Q 015966 324 LKDGGVWI 331 (397)
Q Consensus 324 LKPGG~wI 331 (397)
|||||++|
T Consensus 356 LkpGG~Lv 363 (431)
T PRK14903 356 LEKGGILL 363 (431)
T ss_pred cCCCCEEE
Confidence 99999987
No 144
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.30 E-value=5e-06 Score=86.28 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=70.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..+|++ +-.|+|+|+|..|+..++..+... +
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~--------------------------g---- 299 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL--------------------------G---- 299 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------C----
Confidence 5679999999999999999986 358999999999997766322110 0
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---e---ccC---------ChhhH-------HHHHHHHHHh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---F---FID---------TAHNI-------VEYIEIISRI 323 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---F---FID---------ta~Ni-------~~yi~~I~~~ 323 (397)
. .++.++.+|+.++.. ...+.||+|+.- . .+. +..++ .+.|+.+.++
T Consensus 300 --------~-~~v~~~~~D~~~~~~--~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 368 (444)
T PRK14902 300 --------L-TNIETKALDARKVHE--KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQY 368 (444)
T ss_pred --------C-CeEEEEeCCcccccc--hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 126778889877521 112689999852 1 011 11222 3579999999
Q ss_pred ccCCcEEE
Q 015966 324 LKDGGVWI 331 (397)
Q Consensus 324 LKPGG~wI 331 (397)
|||||.+|
T Consensus 369 LkpGG~lv 376 (444)
T PRK14902 369 LKKGGILV 376 (444)
T ss_pred cCCCCEEE
Confidence 99999998
No 145
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.30 E-value=2.6e-06 Score=83.18 Aligned_cols=204 Identities=20% Similarity=0.221 Sum_probs=104.8
Q ss_pred HHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH-
Q 015966 149 RCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC- 226 (397)
Q Consensus 149 ~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~- 226 (397)
+.=|...++.=+.... | ++.....+..|.+.|.... .++.++||+|||.--.-..-|..=| +++..|++..=+..
T Consensus 19 ~~Yl~~yY~~~~~~~~-~-~~~~~~~L~~l~~~f~~g~-~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el 95 (256)
T PF01234_consen 19 RAYLDTYYSFPSGDDA-E-DEILLFFLKNLHETFSSGG-VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREEL 95 (256)
T ss_dssp HHHHHHHHSTSSS-CH-H-HHHHHHHHHHHHHHHHTSS-S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHH
T ss_pred HHHHHHhcCCCccCcc-c-chhHHHHHHHHHHHhCccC-cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHH
Confidence 3345556644333222 2 2244456666777775432 3577999999998444322343444 58999999876653
Q ss_pred HHhhhhcccccCccccccccccccCCCC-------cccCccccccCCCCCCCCCCCCcceeEecccccccCCCC---CCC
Q 015966 227 SSFILNHTETAGEWNIYPWIHSNCNSLS-------DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPS---QVG 296 (397)
Q Consensus 227 s~fiLn~~~~~~~~~IyPfi~~~Sn~~s-------~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~---~~~ 296 (397)
-+|+ +.. .+-.| -|++..-++... .+.++|.. | =.++..|.+..-..+. ...
T Consensus 96 ~kWl-~~~-~a~DW--s~~~~~v~~lEg~~~~~~e~e~~lR~~-V-------------k~Vv~cDV~~~~pl~~~~~~p~ 157 (256)
T PF01234_consen 96 EKWL-RKE-GAFDW--SPFWKYVCELEGKREKWEEKEEKLRRA-V-------------KQVVPCDVTQPNPLDPPVVLPP 157 (256)
T ss_dssp HHHH-TT--TS--T--HHHHHHHHHHTTSSSGHHHHHHHHHHH-E-------------EEEEE--TTSSSTTTTS-SS-S
T ss_pred HHHH-CCC-CCCCc--cHHHHHHHhccCCcchhhhHHHHHHHh-h-------------ceEEEeeccCCCCCCccccCcc
Confidence 3333 222 22222 233222222111 11222220 0 1245556554221111 124
Q ss_pred CccEEEEeeccCCh-hhHHH---HHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 297 AWDAVVTCFFIDTA-HNIVE---YIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 297 ~fD~VvT~FFIDta-~Ni~~---yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
+||+|+|+|.++.+ +++.+ .++.|.++|||||.+|-.|-|--.+-. .|+..-..+-|+.|.|++.++++||+++.
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~-vG~~~F~~l~l~ee~v~~al~~aG~~i~~ 236 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYM-VGGHKFPCLPLNEEFVREALEEAGFDIED 236 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE-ETTEEEE---B-HHHHHHHHHHTTEEEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE-ECCEecccccCCHHHHHHHHHHcCCEEEe
Confidence 69999999988754 34555 477778899999999965443211111 12111125679999999999999999998
Q ss_pred Ee
Q 015966 373 EK 374 (397)
Q Consensus 373 e~ 374 (397)
.+
T Consensus 237 ~~ 238 (256)
T PF01234_consen 237 LE 238 (256)
T ss_dssp EE
T ss_pred cc
Confidence 66
No 146
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=98.29 E-value=2.5e-06 Score=82.69 Aligned_cols=95 Identities=18% Similarity=0.279 Sum_probs=67.6
Q ss_pred eEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCC
Q 015966 192 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 271 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~ 271 (397)
.++|+|||+|--++-+|..--+|.|.|.|..||-++. .+. +..+ +|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~---k~~--~~~y---------~~-------------------- 81 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAK---KHP--PVTY---------CH-------------------- 81 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhh---cCC--Cccc---------cc--------------------
Confidence 7899999999778888888668999999999997554 111 0000 00
Q ss_pred CCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 272 AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 272 ~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
...+|...++.++.+ .+++.|.|++. .+.| +.++++.++++|||.|-.|
T Consensus 82 ----t~~~ms~~~~v~L~g---~e~SVDlI~~Aqa~HWFd----le~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 82 ----TPSTMSSDEMVDLLG---GEESVDLITAAQAVHWFD----LERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred ----CCccccccccccccC---CCcceeeehhhhhHHhhc----hHHHHHHHHHHcCCCCCEE
Confidence 114666677777765 26899999864 2333 5689999999999877555
No 147
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.28 E-value=5.9e-06 Score=82.10 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=36.7
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
+.+|||+|||+|.++..||++|..|+|+|+|..|+..|+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~ 212 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK 212 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 468999999999999999999999999999999998776
No 148
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.28 E-value=1.3e-05 Score=77.99 Aligned_cols=183 Identities=16% Similarity=0.211 Sum_probs=108.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccc-------cCCCCcccCc
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN-------CNSLSDSDQL 259 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~-------Sn~~s~~~ql 259 (397)
.+..+||+||-.|-|+..||+. |- .|.|+|+....+--|+.-+.+-....-.+.--|++++ |+ ....+..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~-~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ-RNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc-ccccccc
Confidence 4568999999999999999997 43 4899999999988777543322110000000011111 11 1111111
Q ss_pred cccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---c--cC-ChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 260 RPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---F--ID-TAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 260 r~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---F--ID-ta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
-...+||-.. -...+.-+-..||++. ....||+|++.= + |. -.+-+.++|..|+++|.|||++| +
T Consensus 137 ~t~~~p~n~~---f~~~n~vle~~dfl~~-----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv-v 207 (288)
T KOG2899|consen 137 FTTDFPDNVW---FQKENYVLESDDFLDM-----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV-V 207 (288)
T ss_pred ccccCCcchh---cccccEEEecchhhhh-----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE-E
Confidence 1122332110 1233455666677753 257899998652 2 32 23459999999999999999999 6
Q ss_pred cCCcch-hhhc------cCCCCCccccCCHHHHHHHHHh--CCCEEEEEee-cCCCCCC
Q 015966 334 GPLLYH-FADL------YGQEDEMSIELSLEDVKRVALH--YGFEFEKEKT-IETTYTT 382 (397)
Q Consensus 334 GPLlYh-~~d~------~g~~~~~~ieLS~EEl~~ll~~--~GFeii~e~~-i~~~Y~~ 382 (397)
-|--|. |... .+ .....+.|.+|....++.+ .||+-.++.. +.+.|.+
T Consensus 208 EPQpWksY~kaar~~e~~~-~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~~~~sk 265 (288)
T KOG2899|consen 208 EPQPWKSYKKAARRSEKLA-ANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIVSAASK 265 (288)
T ss_pred cCCchHHHHHHHHHHHHhh-cCccceecCHHHHHhhhhhhhhheeeeccccccccccCc
Confidence 777664 2211 01 1123578999999998885 5887666543 5555543
No 149
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.26 E-value=6.9e-06 Score=77.22 Aligned_cols=39 Identities=23% Similarity=0.005 Sum_probs=33.3
Q ss_pred CCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHH
Q 015966 190 PPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSS 228 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~ 228 (397)
+.+|||+|||+|.++.+++.+| -.|+++|.+..++..++
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~ 93 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI 93 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence 4589999999999999866565 58999999999987665
No 150
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.25 E-value=9.9e-06 Score=78.30 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=42.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+.+.... .++.+|||+|||+|.++..|++++..|+|+|++..|+..++
T Consensus 17 ~~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~ 68 (258)
T PRK14896 17 VVDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLR 68 (258)
T ss_pred HHHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 55555554432 25679999999999999999999999999999999987654
No 151
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.23 E-value=7.7e-06 Score=79.40 Aligned_cols=101 Identities=27% Similarity=0.218 Sum_probs=68.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..||++ +-.|+|+|.|..|+..++..++.. .+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~--------------------------g~--- 121 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC--------------------------GV--- 121 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 5679999999999999999875 237999999999997665333211 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE---ee---cc---------CChhhH-------HHHHHHHHHh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FI---------DTAHNI-------VEYIEIISRI 323 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT---~F---FI---------Dta~Ni-------~~yi~~I~~~ 323 (397)
.++.++.+|...+.. ..+.||+|+. |. .+ -+..++ .+.|+.+.++
T Consensus 122 ----------~~v~~~~~D~~~~~~---~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 188 (264)
T TIGR00446 122 ----------LNVAVTNFDGRVFGA---AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDA 188 (264)
T ss_pred ----------CcEEEecCCHHHhhh---hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 125566677655321 2356999985 22 11 112222 3589999999
Q ss_pred ccCCcEEE
Q 015966 324 LKDGGVWI 331 (397)
Q Consensus 324 LKPGG~wI 331 (397)
|||||++|
T Consensus 189 lkpgG~lv 196 (264)
T TIGR00446 189 LKPGGVLV 196 (264)
T ss_pred cCCCCEEE
Confidence 99999988
No 152
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=98.21 E-value=6.5e-06 Score=83.06 Aligned_cols=155 Identities=16% Similarity=0.217 Sum_probs=90.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||-|....-..+.+. .+.|+|+|..-|.-|+--.+...+...-. . ....++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~--------------~---~~~~f~-- 122 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSK--------------Q---YRFDFI-- 122 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-H--------------T---SEECCE--
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccc--------------c---ccccch--
Confidence 678999999999998888888875 58899999999876653332111100000 0 000110
Q ss_pred CCCCCCCCCcceeEeccccc-----ccCCCCCCCCccEEEEee----ccCChhhHHHHHHHHHHhccCCcEEEEecC---
Q 015966 268 HPASAGITEGFSMCGGDFVE-----VYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRILKDGGVWINLGP--- 335 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~e-----ly~~~~~~~~fD~VvT~F----FIDta~Ni~~yi~~I~~~LKPGG~wIN~GP--- 335 (397)
..++.+|... .+. ....+||+|-+.| ...+.+.....|+.|.+.|||||+||..-|
T Consensus 123 ----------a~f~~~D~f~~~l~~~~~--~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 123 ----------AEFIAADCFSESLREKLP--PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp ----------EEEEESTTCCSHHHCTSS--STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred ----------hheeccccccchhhhhcc--ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 2445555432 222 1236999886555 256777788899999999999999995222
Q ss_pred --------------------Ccch--hhhc-----cCC----------CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 336 --------------------LLYH--FADL-----YGQ----------EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 336 --------------------LlYh--~~d~-----~g~----------~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
-+|. |... +|. .+-..+-..++-+.+++++.|++++...
T Consensus 191 ~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~ 266 (331)
T PF03291_consen 191 EIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKK 266 (331)
T ss_dssp HHHCCHHC-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHhhcccccccccCCccEEEEecccCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeC
Confidence 1221 1110 010 0001122479999999999999998754
No 153
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.20 E-value=4.4e-06 Score=78.46 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=67.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc---------C--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL---------G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---------G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~ 257 (397)
...||+..||++|--++-||.. + +.+.|.|+|..+|..|+- -+||-- ...+. ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~-----------G~Y~~~-~~~~~---~~ 95 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA-----------GIYPER-SLRGL---PP 95 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH-----------TEEEGG-GGTTS----H
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh-----------CCCCHH-HHhhh---HH
Confidence 6789999999999876666533 3 689999999999987761 122210 00000 00
Q ss_pred Ccccccc-CCCC-CC--CCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEE
Q 015966 258 QLRPVSI-PDIH-PA--SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 258 qlr~v~i-PDv~-p~--~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
.++.--| +... .. ...+...+.|...|..+... ..+.||+|+|-. |.|.. ...+.++.+++.|+|||++
T Consensus 96 ~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~---~~~~fD~I~CRNVlIYF~~~-~~~~vl~~l~~~L~pgG~L 171 (196)
T PF01739_consen 96 AYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDP---PFGRFDLIFCRNVLIYFDPE-TQQRVLRRLHRSLKPGGYL 171 (196)
T ss_dssp HHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HH-HHHHHHHHHGGGEEEEEEE
T ss_pred HHHHHhccccCCCceeEChHHcCceEEEecccCCCCc---ccCCccEEEecCEEEEeCHH-HHHHHHHHHHHHcCCCCEE
Confidence 0000000 0000 00 00123458999999888222 358999998753 44543 3678999999999999999
Q ss_pred E
Q 015966 331 I 331 (397)
Q Consensus 331 I 331 (397)
+
T Consensus 172 ~ 172 (196)
T PF01739_consen 172 F 172 (196)
T ss_dssp E
T ss_pred E
Confidence 9
No 154
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.20 E-value=1.1e-05 Score=78.79 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=43.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
.+++.+.+.+.. .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++
T Consensus 29 ~i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~ 81 (272)
T PRK00274 29 NILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILA 81 (272)
T ss_pred HHHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHH
Confidence 355655555432 25679999999999999999999999999999999987654
No 155
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=98.20 E-value=8.1e-06 Score=82.10 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=84.5
Q ss_pred cccChhHHhhc--------hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhh
Q 015966 160 AAEGKTERDQC--------YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFI 230 (397)
Q Consensus 160 S~eG~~ER~~~--------y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fi 230 (397)
..-|.+.|+.+ -.+|-..|.+.|. .+...||++|||-|....-.-+.|. ...|+|++..-+.-|+--
T Consensus 84 ~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~----~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~R 159 (389)
T KOG1975|consen 84 TEVGREKRQRSPIIFLRNFNNWIKSVLINLYT----KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKR 159 (389)
T ss_pred HHHhHhhhccCceeehhhhhHHHHHHHHHHHh----ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHH
Confidence 44677777652 1233344444443 2556799999999999888777776 588999998776544422
Q ss_pred hhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEeccccc-----ccCCCCCCCCccEEEEee
Q 015966 231 LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE-----VYSDPSQVGAWDAVVTCF 305 (397)
Q Consensus 231 Ln~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~e-----ly~~~~~~~~fD~VvT~F 305 (397)
.+... .+.+ ...|| ..|++||-+. ++. +.+.+||+|-|-|
T Consensus 160 Yrdm~------------------~r~~---~~~f~------------a~f~~~Dc~~~~l~d~~e--~~dp~fDivScQF 204 (389)
T KOG1975|consen 160 YRDMK------------------NRFK---KFIFT------------AVFIAADCFKERLMDLLE--FKDPRFDIVSCQF 204 (389)
T ss_pred HHHHH------------------hhhh---cccce------------eEEEEeccchhHHHHhcc--CCCCCcceeeeee
Confidence 21110 0000 01111 3566666442 221 2244599987766
Q ss_pred c----cCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015966 306 F----IDTAHNIVEYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 306 F----IDta~Ni~~yi~~I~~~LKPGG~wIN~GP 335 (397)
. ..|.....-.++.+.++|||||+||..-|
T Consensus 205 ~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 205 AFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred eEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 2 44656677899999999999999996444
No 156
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=2.1e-05 Score=76.73 Aligned_cols=117 Identities=23% Similarity=0.219 Sum_probs=86.3
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccCccccccc
Q 015966 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 245 (397)
Q Consensus 169 ~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPf 245 (397)
..|++=+.+|..+.. ..++.+||+.|.|.|.|+..||.. | =+|++.|+-..++..|+.-++..
T Consensus 77 iIyPKD~~~I~~~~g---i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~----------- 142 (256)
T COG2519 77 IIYPKDAGYIVARLG---ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF----------- 142 (256)
T ss_pred eecCCCHHHHHHHcC---CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-----------
Confidence 455555566655443 347899999999999999999963 3 27999999999998887544321
Q ss_pred cccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhcc
Q 015966 246 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 325 (397)
Q Consensus 246 i~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LK 325 (397)
.+.+.+.+..||+.+... .+.||+| |||.. +.-++++.++++||
T Consensus 143 ---------------------------~l~d~v~~~~~Dv~~~~~----~~~vDav----~LDmp-~PW~~le~~~~~Lk 186 (256)
T COG2519 143 ---------------------------GLGDRVTLKLGDVREGID----EEDVDAV----FLDLP-DPWNVLEHVSDALK 186 (256)
T ss_pred ---------------------------ccccceEEEecccccccc----ccccCEE----EEcCC-ChHHHHHHHHHHhC
Confidence 111225667799888543 2489998 57874 57899999999999
Q ss_pred CCcEEEEecC
Q 015966 326 DGGVWINLGP 335 (397)
Q Consensus 326 PGG~wIN~GP 335 (397)
|||.++-+-|
T Consensus 187 pgg~~~~y~P 196 (256)
T COG2519 187 PGGVVVVYSP 196 (256)
T ss_pred CCcEEEEEcC
Confidence 9999997655
No 157
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.18 E-value=1.7e-05 Score=79.04 Aligned_cols=117 Identities=21% Similarity=0.227 Sum_probs=79.1
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
+.|.+.+|.. .+.+|||+|||.|-|+..||+..= .++-+|.|+..+..|+.-+. .|.
T Consensus 148 ~lLl~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~----~N~-------------- 206 (300)
T COG2813 148 RLLLETLPPD---LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA----ANG-------------- 206 (300)
T ss_pred HHHHHhCCcc---CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH----HcC--------------
Confidence 4556666643 345999999999999999999974 89999999999998883321 010
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--ec--cCChhhH-HHHHHHHHHhccCCc
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF--IDTAHNI-VEYIEIISRILKDGG 328 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FF--IDta~Ni-~~yi~~I~~~LKPGG 328 (397)
.++..+...|. |.. ..++||+|+|+ |. .++..++ .+.|+...+.||+||
T Consensus 207 ---------------------~~~~~v~~s~~---~~~--v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gG 260 (300)
T COG2813 207 ---------------------VENTEVWASNL---YEP--VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGG 260 (300)
T ss_pred ---------------------CCccEEEEecc---ccc--ccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCC
Confidence 01112344443 331 23599999998 54 4555443 378999999999999
Q ss_pred EEEE--ecCCcch
Q 015966 329 VWIN--LGPLLYH 339 (397)
Q Consensus 329 ~wIN--~GPLlYh 339 (397)
-+-- -|.|-|.
T Consensus 261 eL~iVan~~l~y~ 273 (300)
T COG2813 261 ELWIVANRHLPYE 273 (300)
T ss_pred EEEEEEcCCCChH
Confidence 5432 2555553
No 158
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.16 E-value=1.1e-05 Score=83.30 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=72.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
++++.+.+.+.. .++.+|||+|||+|.++..||+.+..|+|+|.|..|+..|+.-+.. +
T Consensus 279 ~l~~~~~~~l~~---~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~----~-------------- 337 (431)
T TIGR00479 279 KLVDRALEALEL---QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAEL----N-------------- 337 (431)
T ss_pred HHHHHHHHHhcc---CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHH----h--------------
Confidence 345555544421 2456899999999999999999999999999999999877632210 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccC-CCCCCCCccEEEEeeccCChhh--HHHHHHHHHHhccCCcE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGV 329 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~N--i~~yi~~I~~~LKPGG~ 329 (397)
. -.++.++.||+.++.. .+...+.||+|+ +|.... ..+.++.+.+ |+|+|+
T Consensus 338 --------~-------------~~nv~~~~~d~~~~l~~~~~~~~~~D~vi----~dPPr~G~~~~~l~~l~~-l~~~~i 391 (431)
T TIGR00479 338 --------G-------------IANVEFLAGTLETVLPKQPWAGQIPDVLL----LDPPRKGCAAEVLRTIIE-LKPERI 391 (431)
T ss_pred --------C-------------CCceEEEeCCHHHHHHHHHhcCCCCCEEE----ECcCCCCCCHHHHHHHHh-cCCCEE
Confidence 0 0136788999876321 011235799986 354321 2345555554 888876
Q ss_pred EE
Q 015966 330 WI 331 (397)
Q Consensus 330 wI 331 (397)
..
T Consensus 392 vy 393 (431)
T TIGR00479 392 VY 393 (431)
T ss_pred EE
Confidence 43
No 159
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.15 E-value=1.8e-05 Score=76.98 Aligned_cols=117 Identities=17% Similarity=0.220 Sum_probs=84.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
++..|.+.. +..+||++|.++|.=+..+|+. +-.|+.+|....+...|+-.+.++
T Consensus 70 lL~~l~~~~------~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a---------------- 127 (247)
T PLN02589 70 FLNMLLKLI------NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA---------------- 127 (247)
T ss_pred HHHHHHHHh------CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC----------------
Confidence 666666654 4568999999999999998864 458999999999988877544321
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC--CC--CCCCccEEEEeeccCCh-hhHHHHHHHHHHhcc
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--PS--QVGAWDAVVTCFFIDTA-HNIVEYIEIISRILK 325 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~--~~--~~~~fD~VvT~FFIDta-~Ni~~yi~~I~~~LK 325 (397)
+...++.++.||..++... +. ..++||+| |||.. .+-.+|++.+.++|+
T Consensus 128 ----------------------g~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~i----FiDadK~~Y~~y~~~~l~ll~ 181 (247)
T PLN02589 128 ----------------------GVAHKIDFREGPALPVLDQMIEDGKYHGTFDFI----FVDADKDNYINYHKRLIDLVK 181 (247)
T ss_pred ----------------------CCCCceEEEeccHHHHHHHHHhccccCCcccEE----EecCCHHHhHHHHHHHHHhcC
Confidence 1123478899998875321 00 13689988 67755 346689999999999
Q ss_pred CCcEEEEecCCcch
Q 015966 326 DGGVWINLGPLLYH 339 (397)
Q Consensus 326 PGG~wIN~GPLlYh 339 (397)
|||++| +-..+|+
T Consensus 182 ~GGviv-~DNvl~~ 194 (247)
T PLN02589 182 VGGVIG-YDNTLWN 194 (247)
T ss_pred CCeEEE-EcCCCCC
Confidence 999988 2335664
No 160
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.13 E-value=1.8e-05 Score=78.55 Aligned_cols=97 Identities=14% Similarity=0.185 Sum_probs=67.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
+++.+.+.... .++.+||++|||+|.|+..|++++-.|+|+|++..|+..++-.+...
T Consensus 24 i~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~------------------- 81 (294)
T PTZ00338 24 VLDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNS------------------- 81 (294)
T ss_pred HHHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhc-------------------
Confidence 44555444321 25679999999999999999999999999999999997665222100
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCChhhHHHHH
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEYI 317 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta~Ni~~yi 317 (397)
....++.++.+|+.++.. ..||+||.+ |+|.+.- +...+
T Consensus 82 -------------------~~~~~v~ii~~Dal~~~~-----~~~d~VvaNlPY~Istpi-l~~ll 122 (294)
T PTZ00338 82 -------------------PLASKLEVIEGDALKTEF-----PYFDVCVANVPYQISSPL-VFKLL 122 (294)
T ss_pred -------------------CCCCcEEEEECCHhhhcc-----cccCEEEecCCcccCcHH-HHHHH
Confidence 001247889999987532 468998876 6677642 44444
No 161
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.11 E-value=1.2e-05 Score=83.42 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=71.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||.|||.|..+..||++. -.|+|+|.|..|+..++..++.. ++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~--------------------------g~--- 302 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL--------------------------GL--- 302 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 56799999999999999999862 37999999999997665322210 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCC-CCCCCCccEEEE---ee------------ccCChhh-------HHHHHHHHHH
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVT---CF------------FIDTAHN-------IVEYIEIISR 322 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~-~~~~~~fD~VvT---~F------------FIDta~N-------i~~yi~~I~~ 322 (397)
.++.++.+|+.++... +...++||+|+. |. +..+..+ ..+.++.+++
T Consensus 303 ----------~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 372 (434)
T PRK14901 303 ----------KSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAP 372 (434)
T ss_pred ----------CeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 1256777887765310 012468999985 21 0111222 2467999999
Q ss_pred hccCCcEEE
Q 015966 323 ILKDGGVWI 331 (397)
Q Consensus 323 ~LKPGG~wI 331 (397)
+|||||++|
T Consensus 373 ~lkpgG~lv 381 (434)
T PRK14901 373 LLKPGGTLV 381 (434)
T ss_pred hcCCCCEEE
Confidence 999999998
No 162
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.10 E-value=2.7e-05 Score=72.32 Aligned_cols=40 Identities=20% Similarity=-0.057 Sum_probs=36.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~ 228 (397)
.+.+|||++||+|.++.+++.+|. .|+++|.+..++..++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~ 89 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK 89 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 356899999999999999999998 7999999999987665
No 163
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=98.09 E-value=2.4e-05 Score=77.69 Aligned_cols=121 Identities=11% Similarity=0.115 Sum_probs=75.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc----------CCeEEEEeCCHHHHHHHHhhhhcccccCccccccc----------ccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL----------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW----------IHS 248 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----------Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPf----------i~~ 248 (397)
...||+..||.||--++-||.. .+.|.|.|+|..+|..|+- .+||- ...
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~-----------G~Y~~~~~r~~p~~~~~r 183 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS-----------GIYRQEELKTLSPQQLQR 183 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh-----------CCCCHHHHhcCCHHHHHH
Confidence 3589999999999877766653 3679999999999987761 12331 000
Q ss_pred ccCCC-CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--e-ccCChhhHHHHHHHHHHhc
Q 015966 249 NCNSL-SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F-FIDTAHNIVEYIEIISRIL 324 (397)
Q Consensus 249 ~Sn~~-s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--F-FIDta~Ni~~yi~~I~~~L 324 (397)
+=... ...+ ....+ .+ .+...+.|...|..+.. .+ ..+.||+|+|- + |++. +.....++.+++.|
T Consensus 184 yF~~~~~~~~--~~~~v---~~---~lr~~V~F~~~NL~~~~-~~-~~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L 252 (287)
T PRK10611 184 YFMRGTGPHE--GLVRV---RQ---ELANYVDFQQLNLLAKQ-WA-VPGPFDAIFCRNVMIYFDK-TTQERILRRFVPLL 252 (287)
T ss_pred HcccccCCCC--ceEEE---Ch---HHHccCEEEcccCCCCC-Cc-cCCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHh
Confidence 00000 0000 00010 00 12345888998887621 11 24789999983 2 3444 34778999999999
Q ss_pred cCCcEEE
Q 015966 325 KDGGVWI 331 (397)
Q Consensus 325 KPGG~wI 331 (397)
||||+++
T Consensus 253 ~pgG~L~ 259 (287)
T PRK10611 253 KPDGLLF 259 (287)
T ss_pred CCCcEEE
Confidence 9999887
No 164
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.07 E-value=3.2e-06 Score=88.89 Aligned_cols=147 Identities=18% Similarity=0.228 Sum_probs=88.0
Q ss_pred HHHHHHhhCCCCCCCC-CCeEEEecCCCChhHHHHHHcCCeEEEE---eCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 174 ILEELDALFPNRSKES-PPACLVPGAGLGRLALEISHLGFISQGN---EFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~-~~rVLvPGCGlGRLa~eLA~~Gf~V~Gn---D~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
-++.|.+.+|...... -..+||.|||+|.++..|..+|--+..+ |-.... .+|+|.
T Consensus 101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~q---vqfale----------------- 160 (506)
T PF03141_consen 101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQ---VQFALE----------------- 160 (506)
T ss_pred HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchh---hhhhhh-----------------
Confidence 4556666666421122 3367999999999999999998654222 111111 111111
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeec-cCChhhHHHHHHHHHHhccCCc
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF-IDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FF-IDta~Ni~~yi~~I~~~LKPGG 328 (397)
|+ +|.+ +. +.|.- .+|+.++.||+|=|.-+ +.=..+---|+-.|.|+|+|||
T Consensus 161 ----------RG--vpa~----------~~-~~~s~----rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGG 213 (506)
T PF03141_consen 161 ----------RG--VPAM----------IG-VLGSQ----RLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGG 213 (506)
T ss_pred ----------cC--cchh----------hh-hhccc----cccCCccchhhhhcccccccchhcccceeehhhhhhccCc
Confidence 22 1211 11 11221 23455799999977643 3222222358999999999999
Q ss_pred EEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 329 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 329 ~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+||--||..|.-.+ ...+-.++++..+.+.+-|+.+.++
T Consensus 214 yfv~S~ppv~~r~~-------~~~~~~~~~~~~l~~~lCW~~va~~ 252 (506)
T PF03141_consen 214 YFVLSGPPVYQRTD-------EDLEEEWNAMEDLAKSLCWKKVAEK 252 (506)
T ss_pred eEEecCCcccccch-------HHHHHHHHHHHHHHHHHHHHHheee
Confidence 99999998881110 1223457788888888889887754
No 165
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.06 E-value=2.7e-05 Score=78.98 Aligned_cols=123 Identities=21% Similarity=0.184 Sum_probs=83.2
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
+..|.++...-.+... +++..||||=||||....|..-.|..|.|+|++..|+.-++--|+
T Consensus 180 s~~P~lAR~mVNLa~v--~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~----------------- 240 (347)
T COG1041 180 SMDPRLARAMVNLARV--KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLE----------------- 240 (347)
T ss_pred CcCHHHHHHHHHHhcc--ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhh-----------------
Confidence 4556666655544432 467799999999999999999999999999999999976652221
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-c-cCC----h--hh-HHHHHHHH
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F-IDT----A--HN-IVEYIEII 320 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-F-IDt----a--~N-i~~yi~~I 320 (397)
...+++. ..+...|.+.+- + .++++|+|+|=- | ..+ . .. ..+.|+++
T Consensus 241 -----------~y~i~~~----------~~~~~~Da~~lp-l--~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~ 296 (347)
T COG1041 241 -----------YYGIEDY----------PVLKVLDATNLP-L--RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESA 296 (347)
T ss_pred -----------hhCcCce----------eEEEecccccCC-C--CCCccceEEecCCCCcccccccccHHHHHHHHHHHH
Confidence 1111111 122333776653 2 245799999852 2 111 1 12 45789999
Q ss_pred HHhccCCcEEEEecC
Q 015966 321 SRILKDGGVWINLGP 335 (397)
Q Consensus 321 ~~~LKPGG~wIN~GP 335 (397)
+.+||+||+++-..|
T Consensus 297 ~evLk~gG~~vf~~p 311 (347)
T COG1041 297 SEVLKPGGRIVFAAP 311 (347)
T ss_pred HHHhhcCcEEEEecC
Confidence 999999999986444
No 166
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.06 E-value=3e-05 Score=79.08 Aligned_cols=132 Identities=13% Similarity=0.143 Sum_probs=82.8
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p 269 (397)
+.+|||+|||+|.++..+|.+|..|+|+|+|..++..++..+.. + .
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~----~----------------------~-------- 279 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQM----L----------------------G-------- 279 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHH----c----------------------C--------
Confidence 45899999999999999999999999999999999877632210 0 0
Q ss_pred CCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh--HHHHHHHHHHhccCCcEEEE-ecCCcchhhhccCC
Q 015966 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQ 346 (397)
Q Consensus 270 ~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yi~~I~~~LKPGG~wIN-~GPLlYh~~d~~g~ 346 (397)
. .++.+.++|+.++.. ...++||+|+. |+... ..+.++.|.+ |+|+++..- ..|-.
T Consensus 280 ----~-~~~~~~~~d~~~~~~--~~~~~~D~vi~----DPPr~G~~~~~l~~l~~-~~p~~ivyvsc~p~T--------- 338 (374)
T TIGR02085 280 ----L-DNLSFAALDSAKFAT--AQMSAPELVLV----NPPRRGIGKELCDYLSQ-MAPKFILYSSCNAQT--------- 338 (374)
T ss_pred ----C-CcEEEEECCHHHHHH--hcCCCCCEEEE----CCCCCCCcHHHHHHHHh-cCCCeEEEEEeCHHH---------
Confidence 0 136789999876432 11246998864 44322 2244555543 688765552 33321
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEeecC-CCCCCCcccc
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKEKTIE-TTYTTNPRSM 387 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~-~~Y~~d~~sm 387 (397)
=..|++.+ .||++.+-...+ =++|..-+++
T Consensus 339 --------laRDl~~L---~gy~l~~~~~~DmFPqT~HvE~v 369 (374)
T TIGR02085 339 --------MAKDIAEL---SGYQIERVQLFDMFPHTSHYEVL 369 (374)
T ss_pred --------HHHHHHHh---cCceEEEEEEeccCCCCCcEEEE
Confidence 12445544 599999865332 3344444433
No 167
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.06 E-value=7e-05 Score=71.65 Aligned_cols=140 Identities=19% Similarity=0.156 Sum_probs=97.5
Q ss_pred chHHHHHHHHhhCCCC-CCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccc
Q 015966 170 CYKPILEELDALFPNR-SKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 247 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~-~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~ 247 (397)
+-+.++++|.+..... ..+.+.++|++||=....+.- ..| |+|+.+|+..
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns-------------------------- 82 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNS-------------------------- 82 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCC--------------------------
Confidence 4456888888766422 123468999999965443322 222 4677777643
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhc
Q 015966 248 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRIL 324 (397)
Q Consensus 248 ~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~L 324 (397)
. .-.+.+.||.+.--+....+.||+|+... |+.++...-+.++.+++.|
T Consensus 83 ----------------------~------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL 134 (219)
T PF11968_consen 83 ----------------------Q------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFL 134 (219)
T ss_pred ----------------------C------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 0 01346789988532223468999999875 7888888999999999999
Q ss_pred cCCcE-----EEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 325 KDGGV-----WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 325 KPGG~-----wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
||+|. +.-+=|+--+ .+ +--++.+-++.+++..||+.++.+
T Consensus 135 ~~~g~~~~~~LFlVlP~~Cv-~N--------SRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 135 KPPGLSLFPSLFLVLPLPCV-TN--------SRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred CCCCccCcceEEEEeCchHh-hc--------ccccCHHHHHHHHHhCCcEEEEEE
Confidence 99999 5545555433 11 446899999999999999999854
No 168
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.06 E-value=2.8e-05 Score=80.43 Aligned_cols=41 Identities=12% Similarity=-0.100 Sum_probs=35.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHh
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSF 229 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~f 229 (397)
++.+|||+|||+|..+..+|++ +-.|+|+|+|..|+..++-
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~ 280 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE 280 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 5679999999999999999886 2589999999999987763
No 169
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=98.00 E-value=0.00018 Score=71.77 Aligned_cols=210 Identities=17% Similarity=0.148 Sum_probs=123.0
Q ss_pred cccccccCCCCCCCCCCCCCcccCCCCC--chhhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCe
Q 015966 115 NDFTDSNGNASSPACDWLDPSIQLNVPL--ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPA 192 (397)
Q Consensus 115 ~~~~~~~g~~~~~~~~w~~~~~~~~~~~--~d~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~r 192 (397)
..++.+.|..|.++-+|.=... |. .-+.|. +=+.+..-=--.|-..|..-...+|..-...+.. ...+.+
T Consensus 67 i~lG~~tGFDSGstLDYVYrN~----p~G~~~~Grl--iDr~yLnaiGWrGIR~Rk~~l~~~i~~ai~~L~~--~g~pvr 138 (311)
T PF12147_consen 67 IRLGLETGFDSGSTLDYVYRNQ----PQGKGPLGRL--IDRNYLNAIGWRGIRQRKVHLEELIRQAIARLRE--QGRPVR 138 (311)
T ss_pred eeechhcCCCCcchHhHHhcCC----CCCcchHHHH--HHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHh--cCCceE
Confidence 4566677877777666553322 11 111111 1112211111257777776444333332222222 136899
Q ss_pred EEEecCCCChhHHHHHHcC----CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 193 CLVPGAGLGRLALEISHLG----FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 193 VLvPGCGlGRLa~eLA~~G----f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
|||+.||.||..++..... -.|.-+|+|..-+...+-+...- +
T Consensus 139 IlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~--------------------------g------- 185 (311)
T PF12147_consen 139 ILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER--------------------------G------- 185 (311)
T ss_pred EEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc--------------------------C-------
Confidence 9999999999999986653 35889999998887766443210 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEe----eccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhc-
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC----FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL- 343 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~----FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~- 343 (397)
+.+-++|.++|.++........-..++++.+ +|-|.. -|..-|.-++.+|.|||++|-.| .-||-.-.
T Consensus 186 -----L~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~-lv~~sl~gl~~al~pgG~lIyTg-QPwHPQle~ 258 (311)
T PF12147_consen 186 -----LEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDND-LVRRSLAGLARALEPGGYLIYTG-QPWHPQLEM 258 (311)
T ss_pred -----CccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHH-HHHHHHHHHHHHhCCCcEEEEcC-CCCCcchHH
Confidence 1111578888887642221223445666654 254543 36678999999999999999544 23553221
Q ss_pred -------c-CCCCCccc--cCCHHHHHHHHHhCCCEEEEEe
Q 015966 344 -------Y-GQEDEMSI--ELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 344 -------~-g~~~~~~i--eLS~EEl~~ll~~~GFeii~e~ 374 (397)
. ++.+ ++ .-|..|+.++++++||+=+..+
T Consensus 259 IAr~LtsHr~g~~--WvMRrRsq~EmD~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 259 IARVLTSHRDGKA--WVMRRRSQAEMDQLVEAAGFEKIDQR 297 (311)
T ss_pred HHHHHhcccCCCc--eEEEecCHHHHHHHHHHcCCchhhhe
Confidence 0 1111 22 2499999999999999855543
No 170
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.00 E-value=0.00015 Score=69.71 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=34.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC 226 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~ 226 (397)
++.+|||+|||+|.++..|+++|. .|+|+|+|..||..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 567899999999999999999986 69999999999853
No 171
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.99 E-value=1.7e-05 Score=74.17 Aligned_cols=101 Identities=24% Similarity=0.343 Sum_probs=65.9
Q ss_pred CeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 191 PACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
.-+|++|||.|+....+|++ +..+.|+|++..-+..+. .++... .
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~---~~~~~~-----------------------~------- 65 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL---RKAEKR-----------------------G------- 65 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH---HHHHHH-----------------------T-------
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH---HHHHhh-----------------------c-------
Confidence 38999999999999999998 678999999998776443 211110 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC----hh--h-H--HHHHHHHHHhccCCcEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT----AH--N-I--VEYIEIISRILKDGGVWI 331 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt----a~--N-i--~~yi~~I~~~LKPGG~wI 331 (397)
..++.++.+|...+...-..+++.|.|.-.| -|. .+ . + .++++.++++|||||.+-
T Consensus 66 ------l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~ 130 (195)
T PF02390_consen 66 ------LKNVRFLRGDARELLRRLFPPGSVDRIYINF-PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELY 130 (195)
T ss_dssp ------TSSEEEEES-CTTHHHHHSTTTSEEEEEEES------SGGGGGGSTTSHHHHHHHHHHEEEEEEEE
T ss_pred ------ccceEEEEccHHHHHhhcccCCchheEEEeC-CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEE
Confidence 1247788888776321111257888886655 332 11 1 1 268999999999999775
No 172
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=97.95 E-value=4.2e-05 Score=70.40 Aligned_cols=103 Identities=19% Similarity=0.286 Sum_probs=70.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeE-----------EEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCccc
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFIS-----------QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V-----------~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~ 257 (397)
++..||||=||+|.+..|-|..|..+ .|.|++..|+..|+-.+..+
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a----------------------- 84 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA----------------------- 84 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-----------------------
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-----------------------
Confidence 56789999999999999999887654 49999999998887443221
Q ss_pred CccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--e--ccCChhhHH----HHHHHHHHhccCCcE
Q 015966 258 QLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F--FIDTAHNIV----EYIEIISRILKDGGV 329 (397)
Q Consensus 258 qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--F--FIDta~Ni~----~yi~~I~~~LKPGG~ 329 (397)
.....+.+..+|++++.. ..+.+|+|||. | -+.+...+. +.++.+.++|++..+
T Consensus 85 ---------------g~~~~i~~~~~D~~~l~~---~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v 146 (179)
T PF01170_consen 85 ---------------GVEDYIDFIQWDARELPL---PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAV 146 (179)
T ss_dssp ---------------T-CGGEEEEE--GGGGGG---TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEE
T ss_pred ---------------ccCCceEEEecchhhccc---ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 011236788999998752 35789999998 3 234333333 357888899999666
Q ss_pred EEE
Q 015966 330 WIN 332 (397)
Q Consensus 330 wIN 332 (397)
||-
T Consensus 147 ~l~ 149 (179)
T PF01170_consen 147 FLT 149 (179)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
No 173
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=97.93 E-value=5.1e-05 Score=73.84 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=96.3
Q ss_pred hcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhc
Q 015966 157 RDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNH 233 (397)
Q Consensus 157 RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiLn~ 233 (397)
.+|..-=...-+..|++=+.+|..++.- +++.+||+-|.|.|.|+..||+. | =.|...|+....+..|+--+..
T Consensus 11 e~~~~~l~rrtQIiYpkD~~~I~~~l~i---~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 11 ELWTLSLPRRTQIIYPKDISYILMRLDI---RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER 87 (247)
T ss_dssp HHHHHTS-SSS----HHHHHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcceeeCchHHHHHHHcCC---CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH
Confidence 3565444444467888888888776643 48899999999999999999975 2 2799999999998877632211
Q ss_pred ccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccc-cCCCCCCCCccEEEEeeccCChhh
Q 015966 234 TETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV-YSDPSQVGAWDAVVTCFFIDTAHN 312 (397)
Q Consensus 234 ~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~el-y~~~~~~~~fD~VvT~FFIDta~N 312 (397)
+ .+..++.+..+|..+- +. ...++.+|+| |||.. +
T Consensus 88 ------~--------------------------------gl~~~v~~~~~Dv~~~g~~-~~~~~~~Dav----fLDlp-~ 123 (247)
T PF08704_consen 88 ------H--------------------------------GLDDNVTVHHRDVCEEGFD-EELESDFDAV----FLDLP-D 123 (247)
T ss_dssp ------T--------------------------------TCCTTEEEEES-GGCG--S-TT-TTSEEEE----EEESS-S
T ss_pred ------c--------------------------------CCCCCceeEecceeccccc-ccccCcccEE----EEeCC-C
Confidence 0 1123477888887542 11 1123678887 67864 4
Q ss_pred HHHHHHHHHHhc-cCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 313 IVEYIEIISRIL-KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 313 i~~yi~~I~~~L-KPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.-++|..+.++| ||||++..+-|-.= . ...+.+.|++.||..++
T Consensus 124 Pw~~i~~~~~~L~~~gG~i~~fsP~ie------------Q----v~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 124 PWEAIPHAKRALKKPGGRICCFSPCIE------------Q----VQKTVEALREHGFTDIE 168 (247)
T ss_dssp GGGGHHHHHHHE-EEEEEEEEEESSHH------------H----HHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHhcCCceEEEECCCHH------------H----HHHHHHHHHHCCCeeeE
Confidence 678999999999 89999997655321 1 12333455678998776
No 174
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.91 E-value=5.5e-05 Score=73.16 Aligned_cols=107 Identities=18% Similarity=0.128 Sum_probs=74.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+||++|-|.|.++.++.+.. -.|+.+|++..++.+++--+..... . .
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~---------------~--~----------- 127 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSE---------------G--L----------- 127 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT---------------T--G-----------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcc---------------c--c-----------
Confidence 46799999999999999999886 4799999999999877633211100 0 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCC-CccEEEEeecc--CChhh--HHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVG-AWDAVVTCFFI--DTAHN--IVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~-~fD~VvT~FFI--Dta~N--i~~yi~~I~~~LKPGG~wIN 332 (397)
..++++++.+|.+.+-. ...+ +||+|+.=.+- ..+.+ -.++++.+.++|+|||+++.
T Consensus 128 -------~d~r~~i~~~Dg~~~l~--~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 128 -------DDPRVRIIIGDGRKFLK--ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVL 189 (246)
T ss_dssp -------GSTTEEEEESTHHHHHH--TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCceEEEEhhhHHHHH--hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEE
Confidence 01348889999887543 1234 89999875542 12222 24899999999999999994
No 175
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=97.89 E-value=0.00016 Score=56.56 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=60.5
Q ss_pred EEEecCCCChhH--HHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCC
Q 015966 193 CLVPGAGLGRLA--LEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (397)
Q Consensus 193 VLvPGCGlGRLa--~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~ 270 (397)
||++|||+|+.. ..+...+..++|+|+|..|+..++..... . ..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~-------------------------~~-------- 97 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-A-------------------------GL-------- 97 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c-------------------------CC--------
Confidence 999999999954 44444456899999999998763211000 0 00
Q ss_pred CCCCCCcceeEeccccc-ccCCCCCC-CCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 271 SAGITEGFSMCGGDFVE-VYSDPSQV-GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 271 ~~~~~~~ls~~~GDF~e-ly~~~~~~-~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
..+.+..+|... ... ... ..||++.....+.... ....+..+.+.|||||.++.
T Consensus 98 -----~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~ 153 (257)
T COG0500 98 -----GLVDFVVADALGGVLP--FEDSASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVL 153 (257)
T ss_pred -----CceEEEEeccccCCCC--CCCCCceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEE
Confidence 002345555444 122 223 4799993322222111 67899999999999999985
No 176
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.88 E-value=0.00017 Score=68.74 Aligned_cols=110 Identities=17% Similarity=0.146 Sum_probs=76.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
+...+.+.+.. +++.+||++|||+|..|.-||+.+-.|.++|........|+-.|..
T Consensus 60 ~vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~-------------------- 116 (209)
T COG2518 60 MVARMLQLLEL---KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLET-------------------- 116 (209)
T ss_pred HHHHHHHHhCC---CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHH--------------------
Confidence 44444444432 3678999999999999999999988999999999887766633321
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE-
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN- 332 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN- 332 (397)
.. + .++.+..||-..=+. ....||+|+..--.++.+ +...+-|||||++|-
T Consensus 117 --------lg----------~-~nV~v~~gDG~~G~~---~~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 117 --------LG----------Y-ENVTVRHGDGSKGWP---EEAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVIP 168 (209)
T ss_pred --------cC----------C-CceEEEECCcccCCC---CCCCcCEEEEeeccCCCC------HHHHHhcccCCEEEEE
Confidence 11 1 237789999765443 357899987433333322 345568999999996
Q ss_pred ec
Q 015966 333 LG 334 (397)
Q Consensus 333 ~G 334 (397)
+|
T Consensus 169 vG 170 (209)
T COG2518 169 VG 170 (209)
T ss_pred Ec
Confidence 44
No 177
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.88 E-value=0.0001 Score=70.63 Aligned_cols=99 Identities=26% Similarity=0.339 Sum_probs=75.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
+..+||++|.++|.=+..+|.. | .++.+|+.+.|...|+-.+..+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g-~l~tiE~~~e~~~~A~~n~~~a------------------------------ 107 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDG-RLTTIERDEERAEIARENLAEA------------------------------ 107 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCC-eEEEEeCCHHHHHHHHHHHHHc------------------------------
Confidence 5679999999999999988865 4 6999999999999888554332
Q ss_pred CCCCCCCCCCCCcceeEe-cccccccCCCCCCCCccEEEEeeccCChh-hHHHHHHHHHHhccCCcEEE
Q 015966 265 PDIHPASAGITEGFSMCG-GDFVEVYSDPSQVGAWDAVVTCFFIDTAH-NIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~-GDF~ely~~~~~~~~fD~VvT~FFIDta~-Ni~~yi~~I~~~LKPGG~wI 331 (397)
+..+.+.++. ||-.+.... ...++||+| |||.++ +-.+|++.+.++|||||+.|
T Consensus 108 --------g~~~~i~~~~~gdal~~l~~-~~~~~fDli----FIDadK~~yp~~le~~~~lLr~GGliv 163 (219)
T COG4122 108 --------GVDDRIELLLGGDALDVLSR-LLDGSFDLV----FIDADKADYPEYLERALPLLRPGGLIV 163 (219)
T ss_pred --------CCcceEEEEecCcHHHHHHh-ccCCCccEE----EEeCChhhCHHHHHHHHHHhCCCcEEE
Confidence 1112255666 688776531 235899998 788653 45689999999999999999
No 178
>PLN02823 spermine synthase
Probab=97.87 E-value=7.8e-05 Score=75.49 Aligned_cols=109 Identities=16% Similarity=0.226 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
...+||++|+|.|.++.++.+.. -.|+.+|+...++.+++--+ |+.+ + . +
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~------------~~~~---~---------~--~-- 154 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHL------------TVNR---E---------A--F-- 154 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhc------------cccc---c---------c--c--
Confidence 45689999999999999998853 46999999999998776211 1100 0 0 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC-----hhhH--HHHHH-HHHHhccCCcEEE-EecC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-----AHNI--VEYIE-IISRILKDGGVWI-NLGP 335 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-----a~Ni--~~yi~-~I~~~LKPGG~wI-N~GP 335 (397)
...++.++.+|.+.+-. ...++||+|+.=.+ |. +..+ .++++ .+.+.|+|||+++ +.++
T Consensus 155 -------~dprv~v~~~Da~~~L~--~~~~~yDvIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 155 -------CDKRLELIINDARAELE--KRDEKFDVIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred -------cCCceEEEEChhHHHHh--hCCCCccEEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 01347889999887543 23578999986433 21 1111 36787 8999999999998 4554
No 179
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.85 E-value=0.00016 Score=69.44 Aligned_cols=52 Identities=13% Similarity=0.058 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+.+.... .++.+|||+|||+|.++..|++++..|+|+|.+..|+..++
T Consensus 17 i~~~i~~~~~~---~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~ 68 (253)
T TIGR00755 17 VIQKIVEAANV---LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILR 68 (253)
T ss_pred HHHHHHHhcCC---CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHH
Confidence 55555554432 25679999999999999999999999999999999987654
No 180
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.84 E-value=0.00011 Score=69.63 Aligned_cols=93 Identities=15% Similarity=0.253 Sum_probs=67.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+|||+|+|.|.++..|+++ +-+++..|+ +.++..++ +
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~-------~------------------------------ 141 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAK-------E------------------------------ 141 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHH-------H------------------------------
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhccc-------c------------------------------
Confidence 4568999999999999999988 677888888 55542211 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCC--cEEEEe
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDG--GVWINL 333 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPG--G~wIN~ 333 (397)
.+++.++.|||++-. | . +|+|+-..+|+ ..+.....|+.+++.|+|| |.+|-+
T Consensus 142 --------~~rv~~~~gd~f~~~--P---~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 142 --------ADRVEFVPGDFFDPL--P---V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp --------TTTEEEEES-TTTCC--S---S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred --------ccccccccccHHhhh--c---c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 134889999998533 2 3 99999876653 5566889999999999999 988853
No 181
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=97.79 E-value=8.7e-05 Score=75.19 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=69.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+...|||.|||||-|...-|+.|. .|.|+|.|.-+ ..|+-+.+. |.+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~----N~~--------------------------- 107 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKD----NGL--------------------------- 107 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHh----cCc---------------------------
Confidence 567999999999999999999998 59999999865 444433321 111
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhh-HHHHHHHHHHhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHN-IVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~N-i~~yi~~I~~~LKPGG~wI 331 (397)
..-+.++.|...++ ..| .++.|+|++-+ |+=- ++ +-.+|-.=-+.|||||+..
T Consensus 108 -------~~ii~vi~gkvEdi-~LP--~eKVDiIvSEWMGy~Ll~-EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 108 -------EDVITVIKGKVEDI-ELP--VEKVDIIVSEWMGYFLLY-ESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred -------cceEEEeecceEEE-ecC--ccceeEEeehhhhHHHHH-hhhhhhhhhhhhhccCCCceEc
Confidence 11267788887777 334 58899999863 3221 22 2234444458899999987
No 182
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.78 E-value=0.00025 Score=70.31 Aligned_cols=105 Identities=18% Similarity=0.161 Sum_probs=76.8
Q ss_pred CeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 191 PACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
.+||++|-|.|..++++.+.. -+++.+|+...++..|+.-+-. .++. .+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~---------------~~~~------------~~-- 128 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPE---------------PSGG------------AD-- 128 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccC---------------cccc------------cC--
Confidence 599999999999999999998 5799999999999887732210 0000 00
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeec--cCChhhH--HHHHHHHHHhccCCcEEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHNI--VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FF--IDta~Ni--~~yi~~I~~~LKPGG~wIN 332 (397)
.+++.++.+|-.++-. ...++||+|+.--+ .-.++++ .++++.++++|||+|+++.
T Consensus 129 ------dpRv~i~i~Dg~~~v~--~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~ 188 (282)
T COG0421 129 ------DPRVEIIIDDGVEFLR--DCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVA 188 (282)
T ss_pred ------CCceEEEeccHHHHHH--hCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEE
Confidence 1347888888887643 22358999986433 2344443 4799999999999999995
No 183
>PRK00536 speE spermidine synthase; Provisional
Probab=97.77 E-value=0.00019 Score=70.53 Aligned_cols=98 Identities=14% Similarity=0.217 Sum_probs=68.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
+..|||++|-|-|..++|+.|.--+|+-+|+...++.+++- ..|.++. ...
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~------------~lP~~~~------------~~~----- 122 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFIS------------FFPHFHE------------VKN----- 122 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHH------------HCHHHHH------------hhc-----
Confidence 56899999999999999999986699999999999987762 1232221 001
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
..++.++. .+.+ ...++||+|+.= ...+ .++++.++++|+|||++|.
T Consensus 123 ------DpRv~l~~-~~~~-----~~~~~fDVIIvD----s~~~-~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 123 ------NKNFTHAK-QLLD-----LDIKKYDLIICL----QEPD-IHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred ------CCCEEEee-hhhh-----ccCCcCCEEEEc----CCCC-hHHHHHHHHhcCCCcEEEE
Confidence 11244443 1221 123789999853 1111 4788999999999999997
No 184
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.77 E-value=0.00073 Score=68.09 Aligned_cols=117 Identities=9% Similarity=-0.002 Sum_probs=69.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHH------HHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEI------SHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 245 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eL------A~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPf 245 (397)
+.-...|.+.++ ++..|+++|||.||-+.-| +..++.-.++|+|..+|..+.--|
T Consensus 64 ~~~~~~Ia~~i~-----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L-------------- 124 (319)
T TIGR03439 64 KKHSSDIAASIP-----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAEL-------------- 124 (319)
T ss_pred HHHHHHHHHhcC-----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhh--------------
Confidence 334445555554 4558999999999985432 223567789999999997554211
Q ss_pred cccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccC-CCC--CCCCccEEEEe---e-ccCChhhHHHHHH
Q 015966 246 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPS--QVGAWDAVVTC---F-FIDTAHNIVEYIE 318 (397)
Q Consensus 246 i~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~-~~~--~~~~fD~VvT~---F-FIDta~Ni~~yi~ 318 (397)
+.-.+|.+. +.-+.|||.+... .+. ......+|+-. + -. +......+++
T Consensus 125 --------------~~~~~p~l~---------v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf-~~~ea~~fL~ 180 (319)
T TIGR03439 125 --------------PLGNFSHVR---------CAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNF-SRPEAAAFLA 180 (319)
T ss_pred --------------hhccCCCeE---------EEEEEecHHHHHhhcccccccCCccEEEEeCccccCC-CHHHHHHHHH
Confidence 111223321 3447788866421 111 12234444321 1 12 3345678999
Q ss_pred HHHH-hccCCcEEE
Q 015966 319 IISR-ILKDGGVWI 331 (397)
Q Consensus 319 ~I~~-~LKPGG~wI 331 (397)
.|++ .|+|||.++
T Consensus 181 ~~~~~~l~~~d~lL 194 (319)
T TIGR03439 181 GFLATALSPSDSFL 194 (319)
T ss_pred HHHHhhCCCCCEEE
Confidence 9999 999998887
No 185
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.76 E-value=0.00016 Score=71.00 Aligned_cols=122 Identities=17% Similarity=0.181 Sum_probs=71.5
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH---------cCCeEEEEeCCHHHHHHHHhhhhcccccCccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISH---------LGFISQGNEFSYYMMICSSFILNHTETAGEWNIY 243 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~---------~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~Iy 243 (397)
.|.+.+.+.+.. .++.+||||+||+|.+..++.+ ....+.|+|++..++..|..-+- .
T Consensus 33 ~i~~l~~~~~~~---~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~--l-------- 99 (311)
T PF02384_consen 33 EIVDLMVKLLNP---KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL--L-------- 99 (311)
T ss_dssp HHHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH--H--------
T ss_pred HHHHHHHhhhhc---cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh--h--------
Confidence 355666665532 2566899999999999888776 46789999999999877653210 0
Q ss_pred cccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccC-------------
Q 015966 244 PWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID------------- 308 (397)
Q Consensus 244 Pfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFID------------- 308 (397)
+.+. ...+.+..+|.+.-... .....||+|+++ |-..
T Consensus 100 ----------------~~~~-----------~~~~~i~~~d~l~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~ 151 (311)
T PF02384_consen 100 ----------------HGID-----------NSNINIIQGDSLENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERF 151 (311)
T ss_dssp ----------------TTHH-----------CBGCEEEES-TTTSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCC
T ss_pred ----------------hccc-----------ccccccccccccccccc-ccccccccccCCCCccccccccccccccccc
Confidence 0000 01134566675443221 113689999887 2100
Q ss_pred ------ChhhHHHHHHHHHHhccCCcEEEEecC
Q 015966 309 ------TAHNIVEYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 309 ------ta~Ni~~yi~~I~~~LKPGG~wIN~GP 335 (397)
....-..++..+.+.||+||..+-+-|
T Consensus 152 ~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 152 KKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp TTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 111123488999999999999775444
No 186
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.67 E-value=0.00058 Score=68.89 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=37.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhh
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiL 231 (397)
.+.+|||+|||+|-++.-|+.+ |..++|+|++..++..|+...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv 158 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAII 158 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 5689999999999998888776 789999999999999888543
No 187
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=97.64 E-value=0.0004 Score=68.46 Aligned_cols=125 Identities=12% Similarity=0.127 Sum_probs=74.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----------CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL-----------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-----------Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~ 257 (397)
...||..+||+||--++-||.. .+.+.|.|+|..+|..|+ .-+||--....+ ...
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~-----------~G~Y~~~~~~~~---~~~ 161 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR-----------AGIYPSRELLRG---LPP 161 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh-----------cCCCChhHhhcc---CCH
Confidence 4789999999999866665543 367899999999997665 234551000000 000
Q ss_pred Ccccc---ccCCCC-CCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHhccCCcEE
Q 015966 258 QLRPV---SIPDIH-PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 258 qlr~v---~iPDv~-p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
+++.- +.+|-. .-...+...+.|...|..+-.. ..+.||+|+|- -|+|... -.+.++.++..|||||++
T Consensus 162 ~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~-q~~il~~f~~~L~~gG~L 237 (268)
T COG1352 162 ELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEET-QERILRRFADSLKPGGLL 237 (268)
T ss_pred HHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHH-HHHHHHHHHHHhCCCCEE
Confidence 00000 011100 0000123457888888765321 35789999974 2445322 357899999999999999
Q ss_pred E
Q 015966 331 I 331 (397)
Q Consensus 331 I 331 (397)
+
T Consensus 238 f 238 (268)
T COG1352 238 F 238 (268)
T ss_pred E
Confidence 8
No 188
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.61 E-value=0.00035 Score=76.96 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=71.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--------------------------------------------CeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--------------------------------------------FISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--------------------------------------------f~V~GnD~S~~ML 224 (397)
++..++||+||.|.+..|.|..+ ..++|+|++..|+
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46789999999999999998741 2589999999999
Q ss_pred HHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe
Q 015966 225 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (397)
Q Consensus 225 ~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~ 304 (397)
..|+--+... +....+.+..+|+.++.. +...++||+|||+
T Consensus 270 ~~A~~N~~~~--------------------------------------g~~~~i~~~~~D~~~~~~-~~~~~~~d~IvtN 310 (702)
T PRK11783 270 QAARKNARRA--------------------------------------GVAELITFEVKDVADLKN-PLPKGPTGLVISN 310 (702)
T ss_pred HHHHHHHHHc--------------------------------------CCCcceEEEeCChhhccc-ccccCCCCEEEEC
Confidence 9887332211 111236788999988642 2223579999998
Q ss_pred --ec--cCChhhHHHHHHHHHHhcc---CCcEEE
Q 015966 305 --FF--IDTAHNIVEYIEIISRILK---DGGVWI 331 (397)
Q Consensus 305 --FF--IDta~Ni~~yi~~I~~~LK---PGG~wI 331 (397)
|. +....++.+..+.+-+.|| +|+...
T Consensus 311 PPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 311 PPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred CCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 54 4444556666556666655 776554
No 189
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=97.53 E-value=0.00035 Score=66.90 Aligned_cols=123 Identities=21% Similarity=0.214 Sum_probs=81.9
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhcccccCccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 245 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPf 245 (397)
.|..++++|..++- ++.+.|++|.|+|.|+.-+|++ |-.+.|+|.=...+..|..-+++-
T Consensus 68 mha~~le~L~~~L~-----pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~----------- 131 (237)
T KOG1661|consen 68 MHATALEYLDDHLQ-----PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD----------- 131 (237)
T ss_pred HHHHHHHHHHHhhc-----cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh-----------
Confidence 35678888887653 6789999999999998888754 556699999888887776433211
Q ss_pred cccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhcc
Q 015966 246 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 325 (397)
Q Consensus 246 i~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LK 325 (397)
++-|++ +. .-....++++.||-+..+. ...+||+|..- . ...+.-+..-..||
T Consensus 132 ----------------i~~~e~-~~-~~~~~~l~ivvGDgr~g~~---e~a~YDaIhvG---A---aa~~~pq~l~dqL~ 184 (237)
T KOG1661|consen 132 ----------------ITTSES-SS-KLKRGELSIVVGDGRKGYA---EQAPYDAIHVG---A---AASELPQELLDQLK 184 (237)
T ss_pred ----------------ccCchh-hh-hhccCceEEEeCCccccCC---ccCCcceEEEc---c---CccccHHHHHHhhc
Confidence 111111 00 0012348899999988875 35889999653 1 12345566667788
Q ss_pred CCcEEEE-ecC
Q 015966 326 DGGVWIN-LGP 335 (397)
Q Consensus 326 PGG~wIN-~GP 335 (397)
|||.+|- .||
T Consensus 185 ~gGrllip~~~ 195 (237)
T KOG1661|consen 185 PGGRLLIPVGQ 195 (237)
T ss_pred cCCeEEEeecc
Confidence 8777773 554
No 190
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.52 E-value=0.00065 Score=72.04 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=35.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC----------CeEEEEeCCHHHHHHHHhhh
Q 015966 189 SPPACLVPGAGLGRLALEISHLG----------FISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G----------f~V~GnD~S~~ML~~s~fiL 231 (397)
...+|||||||+|.+...++++. -++.|.|++...+..++..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 45799999999999988887643 35789999999988777544
No 191
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.47 E-value=0.00089 Score=62.27 Aligned_cols=104 Identities=23% Similarity=0.329 Sum_probs=75.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 188 ESPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
.++.-||++|.|||-++..|-++|. .++++|.|.+.... |+. .+
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~----L~~-----------------------------~~ 93 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCH----LNQ-----------------------------LY 93 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHH----HHH-----------------------------hC
Confidence 3677999999999999999999996 58999999988643 221 12
Q ss_pred CCCCCCCCCCCCcceeEeccccccc--CCCCCCCCccEEEEee-c--cCChhhHHHHHHHHHHhccCCcEEEE--ecCC
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVY--SDPSQVGAWDAVVTCF-F--IDTAHNIVEYIEIISRILKDGGVWIN--LGPL 336 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely--~~~~~~~~fD~VvT~F-F--IDta~Ni~~yi~~I~~~LKPGG~wIN--~GPL 336 (397)
|+ ..++.||..++. ........||+|+++. + +.+. -.+++++.....|.+||.+|- .||+
T Consensus 94 p~-----------~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~-~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 94 PG-----------VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMH-RRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred CC-----------ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHH-HHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 33 345667766553 1123346799999985 3 3333 256899999999999999996 4654
No 192
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.43 E-value=0.0014 Score=65.39 Aligned_cols=52 Identities=10% Similarity=-0.091 Sum_probs=41.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~ 228 (397)
+++++.+.+.. .++..+||.+||+|..+..|++.+ ..|.|+|.+..|+..++
T Consensus 7 ll~Evl~~L~~---~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak 61 (296)
T PRK00050 7 LLDEVVDALAI---KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAK 61 (296)
T ss_pred cHHHHHHhhCC---CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHH
Confidence 44555555532 256799999999999999999984 68999999999998776
No 193
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.41 E-value=0.0012 Score=64.81 Aligned_cols=79 Identities=18% Similarity=0.137 Sum_probs=59.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++..||++|+|+|.|+..|+++|..|+++|+...|+..-+-.+
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~------------------------------------- 72 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERF------------------------------------- 72 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhc-------------------------------------
Confidence 4679999999999999999999999999999999975432110
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCCh
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA 310 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta 310 (397)
....++.++.||+..+.. +... +++.||.+ |.|.|.
T Consensus 73 ----~~~~n~~vi~~DaLk~d~-~~l~-~~~~vVaNlPY~Issp 110 (259)
T COG0030 73 ----APYDNLTVINGDALKFDF-PSLA-QPYKVVANLPYNISSP 110 (259)
T ss_pred ----ccccceEEEeCchhcCcc-hhhc-CCCEEEEcCCCcccHH
Confidence 012358899999988643 2111 68889887 677764
No 194
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=97.41 E-value=0.00038 Score=71.35 Aligned_cols=147 Identities=22% Similarity=0.253 Sum_probs=95.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+..++|+.|||.|....+++..+ -.++|++.+.+-+..++-.. .. . +++.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~---~~---~----~l~~------------------- 160 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELA---KK---A----YLDN------------------- 160 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHH---HH---H----Hhhh-------------------
Confidence 45589999999999999999986 68999999987765443111 00 0 0111
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe---------cCCcc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL---------GPLLY 338 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~---------GPLlY 338 (397)
.-.++.+||..- |+.++.||.|-+.--.--+++....+++|+++|||||+||.. .+--+
T Consensus 161 ---------k~~~~~~~~~~~---~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~ 228 (364)
T KOG1269|consen 161 ---------KCNFVVADFGKM---PFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSE 228 (364)
T ss_pred ---------hcceehhhhhcC---CCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcc
Confidence 122244565442 345788999876544445667889999999999999999961 22112
Q ss_pred hhhhc--cCCCCCccccCCHHHHHHHHHhCCCEEEE-Eeec
Q 015966 339 HFADL--YGQEDEMSIELSLEDVKRVALHYGFEFEK-EKTI 376 (397)
Q Consensus 339 h~~d~--~g~~~~~~ieLS~EEl~~ll~~~GFeii~-e~~i 376 (397)
|..-. .+..+....+....++..+++..||..+. ++.+
T Consensus 229 ~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~dl 269 (364)
T KOG1269|consen 229 HVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEKDL 269 (364)
T ss_pred cccccCceeccccccceeccccHHHHHhhccchhhhhcccc
Confidence 21100 00112223456888899999999998887 4433
No 195
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.37 E-value=0.0011 Score=63.94 Aligned_cols=102 Identities=25% Similarity=0.355 Sum_probs=70.2
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
...+|++|||.|+...++|++- ....|+|+...-+..+ ++++.+. .+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~---l~k~~~~-----------------------~l----- 97 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKA---LKKIKEL-----------------------GL----- 97 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHH---HHHHHHc-----------------------CC-----
Confidence 4689999999999999999995 5688999987766533 2222110 11
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC----hh--h-H--HHHHHHHHHhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT----AH--N-I--VEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt----a~--N-i--~~yi~~I~~~LKPGG~wI 331 (397)
.|+.++.+|..++...-..+++.|-|.-+| -|. -+ . | ..+++.+.++|||||.+-
T Consensus 98 --------~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F-PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 98 --------KNLRLLCGDAVEVLDYLIPDGSLDKIYINF-PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLH 161 (227)
T ss_pred --------CcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-CCCCCCccccccccCCHHHHHHHHHHccCCCEEE
Confidence 147889899887643222346889887665 231 11 0 1 168999999999999987
No 196
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=97.31 E-value=0.00098 Score=63.00 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=67.9
Q ss_pred ccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHHhhhhcccc
Q 015966 159 WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTET 236 (397)
Q Consensus 159 WS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S~~ML~~s~fiLn~~~~ 236 (397)
||.-=..||. +|.+. + .++.+|||+-||.|-++.-+|+ ++-.|.++|+.+..+...+ ....
T Consensus 84 fs~rl~~Er~----Ri~~~----v-----~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~---~Ni~- 146 (200)
T PF02475_consen 84 FSPRLSTERR----RIANL----V-----KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLK---ENIR- 146 (200)
T ss_dssp --GGGHHHHH----HHHTC-----------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHH---HHHH-
T ss_pred EccccHHHHH----HHHhc----C-----CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHH---HHHH-
Confidence 6665556775 23322 2 2567999999999999999999 7888999999987765332 1110
Q ss_pred cCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHH
Q 015966 237 AGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEY 316 (397)
Q Consensus 237 ~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~y 316 (397)
.+ . ....+..+.||.+++.. .+.+|-|+-...-. -.++
T Consensus 147 lN----------------------k------------v~~~i~~~~~D~~~~~~----~~~~drvim~lp~~----~~~f 184 (200)
T PF02475_consen 147 LN----------------------K------------VENRIEVINGDAREFLP----EGKFDRVIMNLPES----SLEF 184 (200)
T ss_dssp HT----------------------T-------------TTTEEEEES-GGG-------TT-EEEEEE--TSS----GGGG
T ss_pred Hc----------------------C------------CCCeEEEEcCCHHHhcC----ccccCEEEECChHH----HHHH
Confidence 01 0 11236778999988743 57899887654322 2378
Q ss_pred HHHHHHhccCCcEE
Q 015966 317 IEIISRILKDGGVW 330 (397)
Q Consensus 317 i~~I~~~LKPGG~w 330 (397)
+.....++|+||+.
T Consensus 185 l~~~~~~~~~~g~i 198 (200)
T PF02475_consen 185 LDAALSLLKEGGII 198 (200)
T ss_dssp HHHHHHHEEEEEEE
T ss_pred HHHHHHHhcCCcEE
Confidence 88899999998864
No 197
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=97.29 E-value=0.001 Score=63.04 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=64.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCe-EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+....+|+|||+|+.+...|.. |+. +.|+|+...-...|.-+++.-++. ...+ +..
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~--~~~~-----------------g~~--- 99 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKR--MKHY-----------------GKR--- 99 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHH--HHHC-----------------TB----
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHH--HHHh-----------------hcc---
Confidence 5678999999999998887744 877 999999998777666444321110 0000 001
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL 336 (397)
...+.+..|||++.-.....-..-|+|+.+-+.= .+.+...|..+..-||||-+.|..-|+
T Consensus 100 --------~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 100 --------PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp ----------EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred --------cccceeeccCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 1236778999976311000002347887654321 234677889999999999999974443
No 198
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=97.29 E-value=0.0013 Score=67.62 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=67.4
Q ss_pred CCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+.+|||++||+|-++..+|+. |. .|++||++..++..++..++. + .+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~----N----------------------~~----- 106 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL----N----------------------GL----- 106 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------CC-----
Confidence 358999999999999999876 43 799999999998776632210 0 00
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
.+..+..+|..++.. . .+.||+|+. |.......+++...+.+++||++.
T Consensus 107 --------~~~~v~~~Da~~~l~--~-~~~fD~V~l----DP~Gs~~~~l~~al~~~~~~gily 155 (382)
T PRK04338 107 --------ENEKVFNKDANALLH--E-ERKFDVVDI----DPFGSPAPFLDSAIRSVKRGGLLC 155 (382)
T ss_pred --------CceEEEhhhHHHHHh--h-cCCCCEEEE----CCCCCcHHHHHHHHHHhcCCCEEE
Confidence 014467788766432 1 357999865 332223578888778899999887
No 199
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.28 E-value=0.00087 Score=61.25 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=57.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+||++|||+|-.+.-+|++ +-.|+..|... -+-..+..+.. +.. ..
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~----N~~-------------~~----------- 95 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIEL----NGS-------------LL----------- 95 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHT----T----------------------------
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHh----ccc-------------cc-----------
Confidence 6789999999999999999999 67899999998 44333321110 000 00
Q ss_pred CCCCCCCCCCcceeEeccccc-ccCCCCCCCCccEEEEe--eccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVE-VYSDPSQVGAWDAVVTC--FFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~e-ly~~~~~~~~fD~VvT~--FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
...++...-|.-+ +.......+.||+|+.+ .|- .......+++|.++|+|+|..+
T Consensus 96 --------~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 96 --------DGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp ------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEE
T ss_pred --------cccccCcEEEecCcccccccccccCCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEE
Confidence 0012222222211 10000123689999975 342 2446788999999999988854
No 200
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.24 E-value=0.00077 Score=61.09 Aligned_cols=49 Identities=14% Similarity=0.007 Sum_probs=35.3
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHH
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYY 222 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ 222 (397)
.+.+.+++ ++-.......+|||+||+.|..+..+.+++ ..|.|+|+...
T Consensus 8 KL~ei~~~-~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 8 KLYEIDEK-FKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHHT-TSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHH-CCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 34444444 441211246899999999999999999999 78999999873
No 201
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=97.14 E-value=0.0061 Score=62.03 Aligned_cols=133 Identities=18% Similarity=0.273 Sum_probs=90.3
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCC
Q 015966 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~ 270 (397)
...+|.|.|+||++..|...--+|.|++|...-++.++ ..+ . |
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a---------~~~----------------------~-~----- 221 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAA---------PYL----------------------A-P----- 221 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhh---------hhh----------------------c-C-----
Confidence 56789999999999999995446999999987765332 000 0 1
Q ss_pred CCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC--
Q 015966 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ-- 346 (397)
Q Consensus 271 ~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~-- 346 (397)
++..+.|||+.- .|. =|+|+....|. |.++..++|+.+++.|+|||..|-.-.++=. ++..+.
T Consensus 222 ------gV~~v~gdmfq~--~P~----~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~-e~~~dd~~ 288 (342)
T KOG3178|consen 222 ------GVEHVAGDMFQD--TPK----GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPE-EDKFDDID 288 (342)
T ss_pred ------Ccceeccccccc--CCC----cCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCC-CCCccccc
Confidence 145678998764 232 25999888764 6677999999999999999999953332211 111110
Q ss_pred -------------CCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 347 -------------EDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 347 -------------~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
..+...+.+..|...++.+.||....-
T Consensus 289 s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~ 328 (342)
T KOG3178|consen 289 SSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMV 328 (342)
T ss_pred cceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEE
Confidence 001245668888888888888876553
No 202
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=97.14 E-value=0.0043 Score=65.54 Aligned_cols=99 Identities=19% Similarity=0.284 Sum_probs=72.0
Q ss_pred CeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCC
Q 015966 191 PACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p 269 (397)
-++|++|||.-+|..++-+-||. ++-+|+|.--+++.. .-.+ .-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~--~~~~------~~--------------------------- 94 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQ--VRNA------KE--------------------------- 94 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHH--hccc------cC---------------------------
Confidence 49999999999999999999995 899999997664322 1000 00
Q ss_pred CCCCCCCcceeEecccccccCCCCCCCCccEEEEe-----eccCCh-----hhHHHHHHHHHHhccCCcEEEE
Q 015966 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-----FFIDTA-----HNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 270 ~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~-----FFIDta-----~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
...+.|...|+..++. .+++||+|+-- +|-|.. .-+..++..|+++|+|||++|+
T Consensus 95 -----~~~~~~~~~d~~~l~f---edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 95 -----RPEMQMVEMDMDQLVF---EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred -----CcceEEEEecchhccC---CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 1127788888877653 47899999832 333211 1245789999999999999997
No 203
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=97.04 E-value=0.008 Score=59.04 Aligned_cols=58 Identities=21% Similarity=0.161 Sum_probs=46.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNH 233 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~ 233 (397)
.++.+|.+..|+. ...+|||.|||.|--+|.+... -.+++++|-|..|+.+++.|+..
T Consensus 20 ~vl~El~~r~p~f---~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 20 RVLSELRKRLPDF---RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred HHHHHHHHhCcCC---CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 4888888888754 5679999999999876655442 34689999999999999988753
No 204
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=97.00 E-value=0.00098 Score=61.28 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=32.3
Q ss_pred eEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 192 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
.|||+.||.|..+..+|+.+-.|.|+|+++..+..++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~ 38 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK 38 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH
Confidence 6999999999999999999999999999999998877
No 205
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.00 E-value=0.0031 Score=58.60 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=62.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
.+.+|||+=||+|.++.|...+|. .|+.+|.+...+.+.+.-+.... +
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~----------------------------~--- 90 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLG----------------------------L--- 90 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhC----------------------------C---
Confidence 467999999999999999999997 79999999988765443222111 0
Q ss_pred CCCCCCCCCcceeEecccccccCC-CCCCCCccEEEEeeccCChh---h-HHHHHHHHH--HhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCFFIDTAH---N-IVEYIEIIS--RILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~-~~~~~~fD~VvT~FFIDta~---N-i~~yi~~I~--~~LKPGG~wI 331 (397)
......+.+|+...... ......||+| |+|+.- . +.+.++.+. .+|+++|+.|
T Consensus 91 -------~~~~~v~~~d~~~~l~~~~~~~~~fDiI----flDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii 150 (183)
T PF03602_consen 91 -------EDKIRVIKGDAFKFLLKLAKKGEKFDII----FLDPPYAKGLYYEELLELLAENNLLNEDGLII 150 (183)
T ss_dssp -------GGGEEEEESSHHHHHHHHHHCTS-EEEE----EE--STTSCHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred -------CcceeeeccCHHHHHHhhcccCCCceEE----EECCCcccchHHHHHHHHHHHCCCCCCCEEEE
Confidence 11255667776544321 0124789998 455431 1 355667766 7899999988
No 206
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=96.96 E-value=0.0048 Score=62.99 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=70.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.-|||.|||.|-|.+.-|+.|. .|.++|-|. |...|+.+.. +|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~-----------------~N---------------- 222 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVA-----------------SN---------------- 222 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHh-----------------cC----------------
Confidence 567899999999999999999997 699999986 6555554432 11
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
...+++..+-|-..++.. .++.|+|++- +.|-...=+..|+.. .+.|||.|...
T Consensus 223 -----~~~~rItVI~GKiEdieL----PEk~DviISEPMG~mL~NERMLEsYl~A-rk~l~P~GkMf 279 (517)
T KOG1500|consen 223 -----NLADRITVIPGKIEDIEL----PEKVDVIISEPMGYMLVNERMLESYLHA-RKWLKPNGKMF 279 (517)
T ss_pred -----CccceEEEccCccccccC----chhccEEEeccchhhhhhHHHHHHHHHH-HhhcCCCCccc
Confidence 112346777788777643 3789999975 334443434556554 49999999876
No 207
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=96.94 E-value=0.0034 Score=66.87 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=66.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
.+..+|++|||.|....++|++- ..+.|+|.+..-+..+. +...+. .+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~---~~~~~~--------------------~l------- 396 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL---KLAGEQ--------------------NI------- 396 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH---HHHHHc--------------------CC-------
Confidence 57789999999999999999995 67899999987554222 221110 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC------hhh-H--HHHHHHHHHhccCCcEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT------AHN-I--VEYIEIISRILKDGGVWI 331 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt------a~N-i--~~yi~~I~~~LKPGG~wI 331 (397)
.++.++.+|+..+... ..++++|.|..+| -|. ... + .++++.++++|||||.+-
T Consensus 397 ---------~N~~~~~~~~~~~~~~-~~~~sv~~i~i~F-PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~ 459 (506)
T PRK01544 397 ---------TNFLLFPNNLDLILND-LPNNSLDGIYILF-PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV 459 (506)
T ss_pred ---------CeEEEEcCCHHHHHHh-cCcccccEEEEEC-CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE
Confidence 1245566665432211 2357788887665 221 011 1 268999999999999775
No 208
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=96.87 E-value=0.0047 Score=64.05 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=88.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+||++=|=||..++..|..|. +|+++|.|-..|-.|+--.. -| ++.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~----LN----------------------g~~---- 266 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAE----LN----------------------GLD---- 266 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHH----hc----------------------CCC----
Confidence 478999999999999999999999 99999999999987652110 00 110
Q ss_pred CCCCCCCCCcceeEecccccccCCC-CCCCCccEEEEe--ecc-------CChhhHHHHHHHHHHhccCCcEEEEecCCc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDP-SQVGAWDAVVTC--FFI-------DTAHNIVEYIEIISRILKDGGVWINLGPLL 337 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~-~~~~~fD~VvT~--FFI-------Dta~Ni~~yi~~I~~~LKPGG~wIN~GPLl 337 (397)
.....++.+|..++.... ....+||+|+.= -|. +-..+..+.+....++|+|||+++-.-- .
T Consensus 267 -------~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~-~ 338 (393)
T COG1092 267 -------GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC-S 338 (393)
T ss_pred -------ccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec-C
Confidence 122678999988864321 123489999852 121 2233445566777799999999995211 0
Q ss_pred chhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 338 Yh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.+ .+.++-.+.|.+.+...|.....
T Consensus 339 ~~----------~~~~~f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 339 RH----------FSSDLFLEIIARAAAAAGRRAQE 363 (393)
T ss_pred Cc----------cCHHHHHHHHHHHHHhcCCcEEE
Confidence 11 12334455666666666665544
No 209
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=96.80 E-value=0.0036 Score=64.43 Aligned_cols=97 Identities=12% Similarity=0.075 Sum_probs=69.1
Q ss_pred CCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 190 PPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+.+|||+-||+|-.+.+++++ | -.|++||+++..+...+.-+.. + .+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~----N----------------------~~---- 94 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY----N----------------------SV---- 94 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------CC----
Confidence 468999999999999999998 5 3799999999988655422110 0 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
.++.++.+|+..+.. .....||+|. +|.-.....+++.+.+.+++||++.
T Consensus 95 ---------~~~~v~~~Da~~~l~--~~~~~fDvId----lDPfGs~~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 95 ---------ENIEVPNEDAANVLR--YRNRKFHVID----IDPFGTPAPFVDSAIQASAERGLLL 144 (374)
T ss_pred ---------CcEEEEchhHHHHHH--HhCCCCCEEE----eCCCCCcHHHHHHHHHhcccCCEEE
Confidence 124567788776543 1135799884 4543333479999999999999887
No 210
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.71 E-value=0.0071 Score=60.12 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=41.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
+++.|-+. ...++...||+.|-|||.|+..|-.+|..|.++|+...|+.
T Consensus 46 v~~~I~~k---a~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmva 94 (315)
T KOG0820|consen 46 VIDQIVEK---ADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVA 94 (315)
T ss_pred HHHHHHhc---cCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHH
Confidence 55555443 33457889999999999999999999999999999999975
No 211
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.67 E-value=0.012 Score=58.56 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=81.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+||++=|=||.++...|+.|. .|+++|.|..+|..++- |... | .+.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~--N~~l--N----------------------g~~---- 172 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKE--NAAL--N----------------------GLD---- 172 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHH--HHHH--T----------------------T-C----
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHH--HHHH--c----------------------CCC----
Confidence 456999999999999999898897 69999999999986652 1110 1 000
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCC----hhhHHHHHHHHHHhccCCcEEEEecCCcchhh
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT----AHNIVEYIEIISRILKDGGVWINLGPLLYHFA 341 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt----a~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~ 341 (397)
.....++++|..+....-...++||+||.= -|.-. ..+..+.+....++|+|||+++.. .
T Consensus 173 -------~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~-------s 238 (286)
T PF10672_consen 173 -------LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC-------S 238 (286)
T ss_dssp -------CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE-------E
T ss_pred -------ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE-------c
Confidence 123678889987743210124689999853 12211 234556788888999999998842 1
Q ss_pred hccCCCCCccccCCHHHHHHHHHhC--CCEEEEE
Q 015966 342 DLYGQEDEMSIELSLEDVKRVALHY--GFEFEKE 373 (397)
Q Consensus 342 d~~g~~~~~~ieLS~EEl~~ll~~~--GFeii~e 373 (397)
. +-.++.+++.+++... -+++++.
T Consensus 239 c--------s~~i~~~~l~~~~~~~a~~~~~~~~ 264 (286)
T PF10672_consen 239 C--------SHHISPDFLLEAVAEAAREVEFIER 264 (286)
T ss_dssp ----------TTS-HHHHHHHHHHHHHHCEEEEE
T ss_pred C--------CcccCHHHHHHHHHHhCccceEeee
Confidence 1 2346666666655543 3555543
No 212
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=96.63 E-value=0.015 Score=59.46 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=60.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+||++|..++.|+++|..|+|+|.+. |- .-+.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~---~~L~------------------------------------- 249 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA---QSLM------------------------------------- 249 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC---Hhhh-------------------------------------
Confidence 678999999999999999999999999999654 21 0000
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG 327 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPG 327 (397)
...++....+|-..... . .+.+|+||+ |.+....+..+.|.+.|..|
T Consensus 250 -----~~~~V~h~~~d~fr~~p--~-~~~vDwvVc----Dmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 250 -----DTGQVEHLRADGFKFRP--P-RKNVDWLVC----DMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred -----CCCCEEEEeccCcccCC--C-CCCCCEEEE----ecccCHHHHHHHHHHHHhcC
Confidence 01225556666554322 1 467899987 66655667778888888766
No 213
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=96.51 E-value=0.007 Score=61.64 Aligned_cols=93 Identities=23% Similarity=0.238 Sum_probs=64.2
Q ss_pred CCCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 188 ESPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
+++.+|++.|+| +|.+|..+|+ +|++|+++|.|..=+..|+-+- + .+.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lG--A----d~~------------------------ 214 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLG--A----DHV------------------------ 214 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhC--C----cEE------------------------
Confidence 478899999875 8899999999 7999999999999876665321 0 000
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEec
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG 334 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~G 334 (397)
+.....|+.+.. .+.||+| |+|+. ...++...+.||+||.++-+|
T Consensus 215 ------------i~~~~~~~~~~~-----~~~~d~i-----i~tv~--~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 215 ------------INSSDSDALEAV-----KEIADAI-----IDTVG--PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred ------------EEcCCchhhHHh-----HhhCcEE-----EECCC--hhhHHHHHHHHhcCCEEEEEC
Confidence 000112222221 2348998 45555 566888889999999999765
No 214
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=96.49 E-value=0.0066 Score=61.73 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=35.2
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
.+|||+|||+|.++..||+..-.|+|+|.|..|+..++
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~ 236 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ 236 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 36999999999999999998889999999999998776
No 215
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.39 E-value=0.0087 Score=52.71 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=36.3
Q ss_pred CCCeEEEecCCCChhHHHHHH------cCCeEEEEeCCHHHHHHHHh
Q 015966 189 SPPACLVPGAGLGRLALEISH------LGFISQGNEFSYYMMICSSF 229 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~------~Gf~V~GnD~S~~ML~~s~f 229 (397)
+..+|+|.|||.|+|++.||. .+..|.|+|.+..++..++-
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~ 71 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQK 71 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHH
Confidence 678999999999999999999 48899999999998876653
No 216
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.37 E-value=0.023 Score=60.23 Aligned_cols=41 Identities=22% Similarity=0.106 Sum_probs=34.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHh
Q 015966 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSF 229 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~f 229 (397)
++.+|||.+||.|.=+..||.+- -.+.+||+|...+...+.
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~ 156 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHA 156 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Confidence 67899999999999999998861 269999999998865553
No 217
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.34 E-value=0.012 Score=61.78 Aligned_cols=125 Identities=17% Similarity=0.151 Sum_probs=84.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+=||.|.++.-||+++..|.|+|++..++.+|.+.... +.
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~----n~----------------------------- 339 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAA----NG----------------------------- 339 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHH----cC-----------------------------
Confidence 557899999999999999999999999999999999988854321 10
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh-HH-HHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-IV-EYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N-i~-~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
..++.|.+||..++.........+|+|+ +|...- +. +.++.|.+.-.+.=+.|..-|...
T Consensus 340 ------i~N~~f~~~~ae~~~~~~~~~~~~d~Vv----vDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~Tl-------- 401 (432)
T COG2265 340 ------IDNVEFIAGDAEEFTPAWWEGYKPDVVV----VDPPRAGADREVLKQLAKLKPKRIVYVSCNPATL-------- 401 (432)
T ss_pred ------CCcEEEEeCCHHHHhhhccccCCCCEEE----ECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHH--------
Confidence 1237788888777643211224678885 575422 22 677788776555555555444321
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
..|+.. +...|+++.+-.
T Consensus 402 ---------aRDl~~-L~~~gy~i~~v~ 419 (432)
T COG2265 402 ---------ARDLAI-LASTGYEIERVQ 419 (432)
T ss_pred ---------HHHHHH-HHhCCeEEEEEE
Confidence 133444 446688877755
No 218
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=96.31 E-value=0.01 Score=60.52 Aligned_cols=38 Identities=16% Similarity=0.019 Sum_probs=35.2
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
.+|||++||+|.++..||+....|+|+|.|..|+..++
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~ 245 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ 245 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH
Confidence 47999999999999999998888999999999998776
No 219
>PRK10742 putative methyltransferase; Provisional
Probab=96.25 E-value=0.013 Score=57.46 Aligned_cols=41 Identities=24% Similarity=0.166 Sum_probs=36.0
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhh
Q 015966 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiL 231 (397)
.+|||.=+|+|++++++|.+|..|+++|-|..+...-+--|
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL 130 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGL 130 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 48999999999999999999999999999998876554333
No 220
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.12 E-value=0.0091 Score=54.70 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=40.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~ 228 (397)
++..|..-+.+. .+.+++++|||+|-|....+..+-+ |.|+|+.+..|.+.+
T Consensus 36 M~~~Ih~Tygdi---Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~ 88 (185)
T KOG3420|consen 36 MLYTIHNTYGDI---EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT 88 (185)
T ss_pred HHHHHHhhhccc---cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh
Confidence 445555555433 5789999999999999777777764 889999999998766
No 221
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.10 E-value=0.079 Score=54.16 Aligned_cols=147 Identities=20% Similarity=0.230 Sum_probs=97.5
Q ss_pred ccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhccccc
Q 015966 159 WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETA 237 (397)
Q Consensus 159 WS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~ 237 (397)
||.-=..||. .+.+... .+.+|||+=||.|.++..+|+.|-. |.++|+.+..+.... ... ..
T Consensus 171 Fsprl~~ER~----Rva~~v~---------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~---eNi-~L 233 (341)
T COG2520 171 FSPRLSTERA----RVAELVK---------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK---ENI-RL 233 (341)
T ss_pred ECCCchHHHH----HHHhhhc---------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH---HHH-Hh
Confidence 6666666775 2333222 4779999999999999999999987 999999887764322 111 00
Q ss_pred CccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHH
Q 015966 238 GEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYI 317 (397)
Q Consensus 238 ~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi 317 (397)
| .+ ...+..+.||-+++-. .-+.+|-|+-.++-++. +|+
T Consensus 234 N----------------------~v------------~~~v~~i~gD~rev~~---~~~~aDrIim~~p~~a~----~fl 272 (341)
T COG2520 234 N----------------------KV------------EGRVEPILGDAREVAP---ELGVADRIIMGLPKSAH----EFL 272 (341)
T ss_pred c----------------------Cc------------cceeeEEeccHHHhhh---ccccCCEEEeCCCCcch----hhH
Confidence 1 11 1126678999988753 12789999877665542 788
Q ss_pred HHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 318 EIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 318 ~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
.....+||+||+.- .|.+..+ ....+....+++....+.|.+....
T Consensus 273 ~~A~~~~k~~g~iH-----yy~~~~e-----~~~~~~~~~~i~~~~~~~~~~~~v~ 318 (341)
T COG2520 273 PLALELLKDGGIIH-----YYEFVPE-----DDIEERPEKRIKSAARKGGYKVEVL 318 (341)
T ss_pred HHHHHHhhcCcEEE-----EEeccch-----hhcccchHHHHHHHHhhccCcceEE
Confidence 88899999977654 1222211 0122357789999999988766553
No 222
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.00 E-value=0.095 Score=50.96 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=83.4
Q ss_pred HHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHH
Q 015966 151 IIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICS 227 (397)
Q Consensus 151 tL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s 227 (397)
|+++-..-|--.+..|.-+ +++-|.+.+ +..++|++|-=||.=+..+|.. +=.|+++|+...-...+
T Consensus 45 t~~~~~~~~~m~v~~d~g~----fl~~li~~~------~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~ 114 (237)
T KOG1663|consen 45 TLTYPQPGSEMLVGPDKGQ----FLQMLIRLL------NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG 114 (237)
T ss_pred HhhcCCcccceecChHHHH----HHHHHHHHh------CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh
Confidence 3333345676676666653 666666654 4669999997777766666655 67899999988877655
Q ss_pred HhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC---CCCCCCccEEEEe
Q 015966 228 SFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTC 304 (397)
Q Consensus 228 ~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~---~~~~~~fD~VvT~ 304 (397)
.-+...+ .....+++++|+..+.... ..+.++||.|
T Consensus 115 ~~~~k~a--------------------------------------gv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa--- 153 (237)
T KOG1663|consen 115 LELVKLA--------------------------------------GVDHKITFIEGPALESLDELLADGESGTFDFA--- 153 (237)
T ss_pred HHHHHhc--------------------------------------cccceeeeeecchhhhHHHHHhcCCCCceeEE---
Confidence 3222111 1112366677766553210 1235789988
Q ss_pred eccCCh-hhHHHHHHHHHHhccCCcEEE
Q 015966 305 FFIDTA-HNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 305 FFIDta-~Ni~~yi~~I~~~LKPGG~wI 331 (397)
|||.- .|=..|++..-++||+||+.+
T Consensus 154 -FvDadK~nY~~y~e~~l~Llr~GGvi~ 180 (237)
T KOG1663|consen 154 -FVDADKDNYSNYYERLLRLLRVGGVIV 180 (237)
T ss_pred -EEccchHHHHHHHHHHHhhcccccEEE
Confidence 56643 344489999999999999999
No 223
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=95.89 E-value=0.087 Score=52.72 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=42.0
Q ss_pred hhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHH
Q 015966 164 KTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSS 228 (397)
Q Consensus 164 ~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~ 228 (397)
+.|-+.--..+++.+.+.- .-.+..|||+|||+|-++.-|+.. + ..|+++|.|...+..|.
T Consensus 127 RpETEE~V~~Vid~~~~~~----~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~ 189 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNNSE----HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK 189 (328)
T ss_pred CccHHHHHHHHHHHHhhhh----hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH
Confidence 4555544444555554321 114558999999999999887654 4 46899999999987665
No 224
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=95.84 E-value=0.0025 Score=61.26 Aligned_cols=139 Identities=19% Similarity=0.206 Sum_probs=86.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
.+.++||+|+|-|-.+..++-.--+|.+.|+|..|..- -+++ .+ .
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~r-------L~kk-~y----------------------n----- 156 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDR-------LKKK-NY----------------------N----- 156 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHH-------Hhhc-CC----------------------c-----
Confidence 56899999999999988888766679999999999631 1111 11 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccC-CcEEEE--ecCCcchhhh-cc
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD-GGVWIN--LGPLLYHFAD-LY 344 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKP-GG~wIN--~GPLlYh~~d-~~ 344 (397)
++- ..|... .+=+||+|.+.-.+|..-+....++-|+.+|+| .|..|- +=|. -||-. ..
T Consensus 157 -----------Vl~--~~ew~~---t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~-~hYVE~N~ 219 (288)
T KOG3987|consen 157 -----------VLT--EIEWLQ---TDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPY-MHYVETNT 219 (288)
T ss_pred -----------eee--ehhhhh---cCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecc-cceeecCC
Confidence 000 112211 134689887767889888888999999999999 787774 2232 23322 11
Q ss_pred CCCCCcc---cc---CCHHH----HHHHHHhCCCEEEEEeecCCCCC
Q 015966 345 GQEDEMS---IE---LSLED----VKRVALHYGFEFEKEKTIETTYT 381 (397)
Q Consensus 345 g~~~~~~---ie---LS~EE----l~~ll~~~GFeii~e~~i~~~Y~ 381 (397)
++.+..+ ++ -++|| +.++++++||.++.- ...+|+
T Consensus 220 ~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veaw--TrlPYL 264 (288)
T KOG3987|consen 220 SGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAW--TRLPYL 264 (288)
T ss_pred CCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhh--hcCCee
Confidence 2211111 11 14443 457788999988652 334454
No 225
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.65 E-value=0.088 Score=51.01 Aligned_cols=64 Identities=20% Similarity=0.182 Sum_probs=40.0
Q ss_pred HHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHH
Q 015966 153 RNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMM 224 (397)
Q Consensus 153 ~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML 224 (397)
+.-+|-|... |. .+-..|..-+......++.+||-+|+.+|..+--++.- .=.|.|+|||+-+.
T Consensus 45 ~~eYR~W~P~----RS----KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~ 111 (229)
T PF01269_consen 45 KVEYRVWNPF----RS----KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM 111 (229)
T ss_dssp -EEEEEE-TT----T-----HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH
T ss_pred ccceeecCch----hh----HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH
Confidence 3357889864 32 45556655444333447889999999999987766654 23699999999653
No 226
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=95.64 E-value=0.11 Score=51.61 Aligned_cols=103 Identities=15% Similarity=0.230 Sum_probs=61.3
Q ss_pred CCCeEEEecCC-CChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 189 SPPACLVPGAG-LGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
...||+-+||| +---+..||++ |..|.++|.++..+..|+-+.+...
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~----------------------------- 170 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL----------------------------- 170 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH--------------------------------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc-----------------------------
Confidence 34599999999 66668888875 4678999999999998876654110
Q ss_pred CCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC-ChhhHHHHHHHHHHhccCCcEEE
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-TAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID-ta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
.+..+|++..+|..++.. .-..||+|+-.-..- ++++=.+.|+.+.+.++||.+.+
T Consensus 171 --------~L~~~m~f~~~d~~~~~~---dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 171 --------GLSKRMSFITADVLDVTY---DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp --------HH-SSEEEEES-GGGG-G---G----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred --------cccCCeEEEecchhcccc---ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence 123458999999877632 136899998665543 45566789999999999999888
No 227
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.63 E-value=0.024 Score=55.10 Aligned_cols=81 Identities=26% Similarity=0.264 Sum_probs=48.8
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCC
Q 015966 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~ 270 (397)
.+|||.=+|+|+.|+-||..|++|+|+|-|+.+.+.-..-|++....... +.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~------------------~~---------- 128 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPEL------------------LA---------- 128 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTT------------------HH----------
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHh------------------HH----------
Confidence 48999999999999999999999999999998876555444433211000 00
Q ss_pred CCCCCCcceeEecccccccCCCCCCCCccEEEE
Q 015966 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT 303 (397)
Q Consensus 271 ~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT 303 (397)
....+|.++.+|..++.. ...++||+|.-
T Consensus 129 --~~~~ri~l~~~d~~~~L~--~~~~s~DVVY~ 157 (234)
T PF04445_consen 129 --EAMRRIQLIHGDALEYLR--QPDNSFDVVYF 157 (234)
T ss_dssp --HHHHHEEEEES-CCCHCC--CHSS--SEEEE
T ss_pred --HHHhCCEEEcCCHHHHHh--hcCCCCCEEEE
Confidence 011358999999988643 23589999953
No 228
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=95.55 E-value=0.048 Score=52.90 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=34.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
++..||++|+|+|.++.+|++.|-.|+++|....+..
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~ 66 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAK 66 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHH
Confidence 5679999999999999999999999999999998764
No 229
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=95.38 E-value=0.068 Score=50.98 Aligned_cols=114 Identities=21% Similarity=0.212 Sum_probs=79.0
Q ss_pred ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCcccc
Q 015966 163 GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNI 242 (397)
Q Consensus 163 G~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~I 242 (397)
+..||-+.|.-.++...+ ..+-|+|+|+|-|++--|+.--.|.++|..+.-...|. .
T Consensus 16 ~D~eRlavF~~ai~~va~----------d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~--------e----- 72 (252)
T COG4076 16 RDVERLAVFTSAIAEVAE----------DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAE--------E----- 72 (252)
T ss_pred hhHHHHHHHHHHHHHHhh----------hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhh--------h-----
Confidence 456888777766666643 46899999999999999999889999999996644332 0
Q ss_pred ccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhH---HHHHHH
Q 015966 243 YPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI---VEYIEI 319 (397)
Q Consensus 243 yPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni---~~yi~~ 319 (397)
.+++|- -.+.+++.||.++ |.+ +.-|+| .|=.|||+-=. .-.+..
T Consensus 73 ------------------N~~v~g--------~~n~evv~gDA~~-y~f----e~ADvv-icEmlDTaLi~E~qVpV~n~ 120 (252)
T COG4076 73 ------------------NLHVPG--------DVNWEVVVGDARD-YDF----ENADVV-ICEMLDTALIEEKQVPVINA 120 (252)
T ss_pred ------------------cCCCCC--------CcceEEEeccccc-ccc----ccccee-HHHHhhHHhhcccccHHHHH
Confidence 112221 1348899999887 442 345765 56678887422 235666
Q ss_pred HHHhccCCcEEE
Q 015966 320 ISRILKDGGVWI 331 (397)
Q Consensus 320 I~~~LKPGG~wI 331 (397)
+-+.||-.|..|
T Consensus 121 vleFLr~d~tii 132 (252)
T COG4076 121 VLEFLRYDPTII 132 (252)
T ss_pred HHHHhhcCCccc
Confidence 777788888887
No 230
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=95.29 E-value=0.11 Score=48.95 Aligned_cols=40 Identities=23% Similarity=-0.029 Sum_probs=34.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~ 228 (397)
.+.+|||+=+|+|-|+.|-+.+|. .|+.+|.+...+.+.+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~ 83 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILK 83 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHH
Confidence 467999999999999999999996 6999999998775443
No 231
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.07 E-value=0.28 Score=46.50 Aligned_cols=139 Identities=13% Similarity=0.190 Sum_probs=81.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
+++.|++-..........-+|++|||.|-..-.|++. | .-..+.|+++..+.+..-- .+.|
T Consensus 28 LlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~T----A~~n------------ 91 (209)
T KOG3191|consen 28 LLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLET----ARCN------------ 91 (209)
T ss_pred HHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHH----HHhc------------
Confidence 5555554221111123557999999999998888876 3 3356999999998764311 1111
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccC------------------Ch
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID------------------TA 310 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFID------------------ta 310 (397)
.+ ++..+..|+..-.. .++.|+++-+ |-.+ +.
T Consensus 92 ----------~~--------------~~~~V~tdl~~~l~----~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~G 143 (209)
T KOG3191|consen 92 ----------RV--------------HIDVVRTDLLSGLR----NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDG 143 (209)
T ss_pred ----------CC--------------ccceeehhHHhhhc----cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcch
Confidence 01 13445666655432 2667776543 2111 11
Q ss_pred hh-HHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 311 HN-IVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 311 ~N-i~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.. +...+..+-.+|.|.|+|--+ .-- .=-.+||.+++++.||....
T Consensus 144 r~v~d~ll~~v~~iLSp~Gv~Ylv----~~~------------~N~p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 144 REVTDRLLPQVPDILSPRGVFYLV----ALR------------ANKPKEILKILEKKGYGVRI 190 (209)
T ss_pred HHHHHHHHhhhhhhcCcCceEEee----ehh------------hcCHHHHHHHHhhcccceeE
Confidence 11 234666777888899988731 111 12357888899999997654
No 232
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=95.06 E-value=0.065 Score=46.55 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=47.1
Q ss_pred hHHHHHH-HHHHhcccccChhHHhhchH--HHHHHHHhhCCCCC-CCCCCeEEEecCCCChhHHHHHHcCCeEEEEeC
Q 015966 146 DKVRCII-RNIVRDWAAEGKTERDQCYK--PILEELDALFPNRS-KESPPACLVPGAGLGRLALEISHLGFISQGNEF 219 (397)
Q Consensus 146 dkv~stL-~q~~RDWS~eG~~ER~~~y~--pIl~~L~~~~p~~~-~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~ 219 (397)
.+++..- +.++..|.+--..+ +-.|. -|..+|..+..... ..+...-.|+|||.|-|++-|.+.||.=.|+|.
T Consensus 12 ~~LK~kYa~~lv~~W~E~TdP~-K~VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 12 QRLKEKYARWLVDNWPESTDPQ-KHVFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred HHHHHHHHHHHHHhCcccCCch-hhHHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 3444444 56778896432222 22232 24455555443221 135678999999999999999999999999985
No 233
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=95.06 E-value=0.13 Score=48.09 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=78.4
Q ss_pred eEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCC
Q 015966 192 ACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p 269 (397)
+|||+|+|-|-.+.-||-. -.+++-+|-..--..+-+.+... ..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~----------------------------L~L----- 97 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRE----------------------------LGL----- 97 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH----------------------------HT------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHH----------------------------hCC-----
Confidence 8999999999998888766 46799999988776543332211 111
Q ss_pred CCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE-ecCCcchhhhccCCCC
Q 015966 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQED 348 (397)
Q Consensus 270 ~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN-~GPLlYh~~d~~g~~~ 348 (397)
.++..+.+...+ . ...+.||+|++--+- .+...++-+..+||+||.+|- -||-
T Consensus 98 ------~nv~v~~~R~E~-~---~~~~~fd~v~aRAv~----~l~~l~~~~~~~l~~~G~~l~~KG~~------------ 151 (184)
T PF02527_consen 98 ------SNVEVINGRAEE-P---EYRESFDVVTARAVA----PLDKLLELARPLLKPGGRLLAYKGPD------------ 151 (184)
T ss_dssp ------SSEEEEES-HHH-T---TTTT-EEEEEEESSS----SHHHHHHHHGGGEEEEEEEEEEESS-------------
T ss_pred ------CCEEEEEeeecc-c---ccCCCccEEEeehhc----CHHHHHHHHHHhcCCCCEEEEEcCCC------------
Confidence 136667777655 1 235899999876553 255778888899999999995 2331
Q ss_pred CccccCCHHHHHHHHHhCCCEEEE
Q 015966 349 EMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 349 ~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.+=..++.+..++..|.+...
T Consensus 152 ---~~~El~~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 152 ---AEEELEEAKKAWKKLGLKVLS 172 (184)
T ss_dssp ----HHHHHTHHHHHHCCCEEEEE
T ss_pred ---hHHHHHHHHhHHHHhCCEEee
Confidence 112245566677777777766
No 234
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=94.71 E-value=0.074 Score=54.13 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=41.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
.+++.+.+.++.. +.+|||+=||+|.++..||+.+-.|.|+|.+..|+..|+
T Consensus 184 ~l~~~~~~~l~~~----~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~ 235 (352)
T PF05958_consen 184 KLYEQALEWLDLS----KGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR 235 (352)
T ss_dssp HHHHHHHHHCTT-----TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHhhcC----CCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH
Confidence 4566666655432 238999999999999999999999999999999998877
No 235
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=94.57 E-value=1 Score=42.80 Aligned_cols=122 Identities=19% Similarity=0.155 Sum_probs=77.0
Q ss_pred EEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCC
Q 015966 193 CLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (397)
Q Consensus 193 VLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~ 270 (397)
|.|.||-=|.|+..|+++|. .|.++|++.--|..|+-.+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~------------------------------------ 44 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY------------------------------------ 44 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT------------------------------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------------------------------------
Confidence 68999999999999999998 6999999999998776433211
Q ss_pred CCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCc
Q 015966 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEM 350 (397)
Q Consensus 271 ~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~ 350 (397)
...+.+....||=++... ..+..|+||-+=. -+.-|.+-|+.....++..-.|| +-|.
T Consensus 45 --~l~~~i~~rlgdGL~~l~---~~e~~d~ivIAGM--GG~lI~~ILe~~~~~~~~~~~lI-LqP~-------------- 102 (205)
T PF04816_consen 45 --GLEDRIEVRLGDGLEVLK---PGEDVDTIVIAGM--GGELIIEILEAGPEKLSSAKRLI-LQPN-------------- 102 (205)
T ss_dssp --T-TTTEEEEE-SGGGG-----GGG---EEEEEEE---HHHHHHHHHHTGGGGTT--EEE-EEES--------------
T ss_pred --CCcccEEEEECCcccccC---CCCCCCEEEEecC--CHHHHHHHHHhhHHHhccCCeEE-EeCC--------------
Confidence 112347778888555433 1233688876522 11124455666666666555666 2221
Q ss_pred cccCCHHHHHHHHHhCCCEEEEEee
Q 015966 351 SIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 351 ~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
-...+|++.|.+.||.++.|..
T Consensus 103 ---~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 103 ---THAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp ---S-HHHHHHHHHHTTEEEEEEEE
T ss_pred ---CChHHHHHHHHHCCCEEEEeEE
Confidence 3578999999999999999863
No 236
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=94.22 E-value=0.017 Score=50.14 Aligned_cols=77 Identities=21% Similarity=0.374 Sum_probs=41.6
Q ss_pred CccEEEEee---ccC--Ch-hhHHHHHHHHHHhccCCcEEEEecCCcch-hhhccCCC-----CCccccCCHHHHHHHHH
Q 015966 297 AWDAVVTCF---FID--TA-HNIVEYIEIISRILKDGGVWINLGPLLYH-FADLYGQE-----DEMSIELSLEDVKRVAL 364 (397)
Q Consensus 297 ~fD~VvT~F---FID--ta-~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh-~~d~~g~~-----~~~~ieLS~EEl~~ll~ 364 (397)
+||+|++.= +|. -. .-+..+|+.|+..|+|||++| +-|--|. |...-... .-..+++-++++..+|.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~li-lEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~ 79 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILI-LEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLL 79 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE-EE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHT
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEE-EeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHH
Confidence 478876541 222 22 338899999999999999999 4555443 21110000 01257788889999888
Q ss_pred h--CCCEEEEEe
Q 015966 365 H--YGFEFEKEK 374 (397)
Q Consensus 365 ~--~GFeii~e~ 374 (397)
. +||...++-
T Consensus 80 ~~evGF~~~e~~ 91 (110)
T PF06859_consen 80 EPEVGFSSVEEL 91 (110)
T ss_dssp STTT---EEEEE
T ss_pred hcccceEEEEEc
Confidence 6 799987643
No 237
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.18 E-value=0.23 Score=47.52 Aligned_cols=130 Identities=18% Similarity=0.118 Sum_probs=77.6
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~---V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.+|.+.+.- -+++.+|+|+||--|.-+..++++.-. |.|+|+-+--.
T Consensus 34 ~el~~k~~i--~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---------------------------- 83 (205)
T COG0293 34 LELNEKFKL--FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------------------------- 83 (205)
T ss_pred HHHHHhcCe--ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----------------------------
Confidence 344444432 236889999999999999998887443 88888765110
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCC-----CCCCCCccEEEEee--------ccCChhh---HHHH
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD-----PSQVGAWDAVVTCF--------FIDTAHN---IVEY 316 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~-----~~~~~~fD~VvT~F--------FIDta~N---i~~y 316 (397)
+ .++.+++|||++--.. .......|+|++=- =+|.+.- ....
T Consensus 84 -----------~-----------~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a 141 (205)
T COG0293 84 -----------I-----------PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELA 141 (205)
T ss_pred -----------C-----------CCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHH
Confidence 1 1267788888752110 01123469998632 1333221 1124
Q ss_pred HHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 317 IEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 317 i~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
++.+..+|+|||.|+.- .| .. =..+++...+++ .|+.++-.
T Consensus 142 ~~~a~~vL~~~G~fv~K---~f--qg-----------~~~~~~l~~~~~-~F~~v~~~ 182 (205)
T COG0293 142 LEFALEVLKPGGSFVAK---VF--QG-----------EDFEDLLKALRR-LFRKVKIF 182 (205)
T ss_pred HHHHHHeeCCCCeEEEE---EE--eC-----------CCHHHHHHHHHH-hhceeEEe
Confidence 56666899999999961 11 11 124566666655 58777744
No 238
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.11 E-value=0.45 Score=49.37 Aligned_cols=106 Identities=13% Similarity=0.238 Sum_probs=73.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-----------------------------------------EEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI-----------------------------------------SQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-----------------------------------------V~GnD~S~~ML~~s 227 (397)
+...++||=||.|.++.|.|.+|-+ ..|.|++.-|+..|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 4468999999999999999999842 56999999999888
Q ss_pred HhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--e
Q 015966 228 SFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F 305 (397)
Q Consensus 228 ~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--F 305 (397)
+ .| ++. ++..+.+.|.++|+..+.. + -+.+|+||++ |
T Consensus 271 k--~N-A~~-----------------------------------AGv~d~I~f~~~d~~~l~~-~--~~~~gvvI~NPPY 309 (381)
T COG0116 271 K--AN-ARA-----------------------------------AGVGDLIEFKQADATDLKE-P--LEEYGVVISNPPY 309 (381)
T ss_pred H--HH-HHh-----------------------------------cCCCceEEEEEcchhhCCC-C--CCcCCEEEeCCCc
Confidence 7 22 111 1223448999999998754 2 1789999998 2
Q ss_pred --ccCChhhHHH----HHHHHHHhccCCcEEEEecC
Q 015966 306 --FIDTAHNIVE----YIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 306 --FIDta~Ni~~----yi~~I~~~LKPGG~wIN~GP 335 (397)
=|.+...+.. +.+++.+.++--+.+|-.++
T Consensus 310 GeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 310 GERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred chhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 2544433442 34455566666667775443
No 239
>KOG2730 consensus Methylase [General function prediction only]
Probab=94.02 E-value=0.06 Score=52.34 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=36.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
....|+|.-||.|.-+...|.+|-.|.++|+++.-+..|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Ak 133 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACAR 133 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHh
Confidence 3457999999999999999999999999999999888776
No 240
>PRK13699 putative methylase; Provisional
Probab=93.97 E-value=0.2 Score=48.07 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=51.1
Q ss_pred eeEecccccccCCCCCCCCccEEEEe--eccCC----h---------hhHHHHHHHHHHhccCCcEEEEecCCcchhhhc
Q 015966 279 SMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT----A---------HNIVEYIEIISRILKDGGVWINLGPLLYHFADL 343 (397)
Q Consensus 279 s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt----a---------~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~ 343 (397)
.+..||.+++.. .-.++++|+|+|- |++.. . +=+.+++++++++|||||.++.+... .
T Consensus 3 ~l~~gD~le~l~-~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~----~-- 75 (227)
T PRK13699 3 RFILGNCIDVMA-RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW----N-- 75 (227)
T ss_pred eEEechHHHHHH-hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc----c--
Confidence 467888887632 1236889999997 55420 0 11346789999999999999863221 0
Q ss_pred cCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 344 YGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 344 ~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
....+..++++.||.+...
T Consensus 76 -----------~~~~~~~al~~~GF~l~~~ 94 (227)
T PRK13699 76 -----------RVDRFMAAWKNAGFSVVGH 94 (227)
T ss_pred -----------cHHHHHHHHHHCCCEEeeE
Confidence 1234566788999997663
No 241
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=93.92 E-value=0.76 Score=44.19 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=86.9
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
..+|+|+|+|.|-.+.-||-. .-.|+-+|-..-=. +|+-.-.. ....
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~---~FL~~~~~-------------------------eL~L--- 116 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI---AFLREVKK-------------------------ELGL--- 116 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH---HHHHHHHH-------------------------HhCC---
Confidence 579999999999999987733 44577777554332 23221111 0111
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCC-ccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGA-WDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~-fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
+++.++.+-..++-. ..+ ||+|++--| .++...++-...+||+||.++. |.+...
T Consensus 117 --------~nv~i~~~RaE~~~~----~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~-----~k~~~~--- 172 (215)
T COG0357 117 --------ENVEIVHGRAEEFGQ----EKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLA-----YKGLAG--- 172 (215)
T ss_pred --------CCeEEehhhHhhccc----ccccCcEEEeehc----cchHHHHHHHHHhcccCCcchh-----hhHHhh---
Confidence 235666666555321 123 999976443 2355778888899999999884 332211
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCCCcccccccc
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQVS 391 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~d~~sm~~~~ 391 (397)
.=-..|.+..+...||.+++......++...++-+.-..
T Consensus 173 ------~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r~l~ii~ 211 (215)
T COG0357 173 ------KDELPEAEKAILPLGGQVEKVFSLTVPELDGERHLVIIR 211 (215)
T ss_pred ------hhhHHHHHHHHHhhcCcEEEEEEeecCCCCCceEEEEEe
Confidence 112456777788889999997767667666555554433
No 242
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=93.84 E-value=0.099 Score=44.94 Aligned_cols=37 Identities=16% Similarity=-0.000 Sum_probs=32.8
Q ss_pred eEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHH
Q 015966 192 ACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSS 228 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~--V~GnD~S~~ML~~s~ 228 (397)
.|||+|||.|..+..++++|.. |.++|.+..|+...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 4899999999999999999875 999999999987544
No 243
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=93.76 E-value=0.33 Score=52.20 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=66.4
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
.++.+||+.|||. |..+...|+. |..|.+.|.+..-+..++-+ .+ ....+-+ ..++....
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl--GA---~~v~i~~---------~e~~~~~~---- 224 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM--GA---EFLELDF---------EEEGGSGD---- 224 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--CC---eEEEecc---------cccccccc----
Confidence 3688999999996 6667666665 99999999999888766521 11 0000000 00000000
Q ss_pred CCCCCCCCCCCcceeEecccc----cccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEec
Q 015966 266 DIHPASAGITEGFSMCGGDFV----EVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG 334 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~----ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~G 334 (397)
.+ ..-.-.|+. +.+. ..-..+|+|+++--+...+...-..+...+.+||||+.|.+|
T Consensus 225 -------gy---a~~~s~~~~~~~~~~~~--~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 225 -------GY---AKVMSEEFIKAEMALFA--EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred -------ch---hhhcchhHHHHHHHHHH--hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 00 000001211 1111 112468999999887654333333589999999999999754
No 244
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=93.69 E-value=0.18 Score=54.40 Aligned_cols=116 Identities=21% Similarity=0.204 Sum_probs=76.3
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHH------HcCCeEEEEeCCHHHHHHHHhhhhcccccCcccccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEIS------HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA------~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi 246 (397)
.|+..|..+.|+........|+++|+|.|=|+...- .+-..+.++|-.+-.+..-. |..
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~---~~n------------ 415 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ---NRN------------ 415 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh---hhc------------
Confidence 488899999887654445677899999999865432 22345666666554433211 100
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHh
Q 015966 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRI 323 (397)
Q Consensus 247 ~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~ 323 (397)
.+ .-.+.+.++.+||+++-. | .++-|++|+-. |=|..- =.+.|..+.+.
T Consensus 416 --------~~----------------~W~~~Vtii~~DMR~w~a-p--~eq~DI~VSELLGSFGDNEL-SPECLDG~q~f 467 (649)
T KOG0822|consen 416 --------FE----------------CWDNRVTIISSDMRKWNA-P--REQADIIVSELLGSFGDNEL-SPECLDGAQKF 467 (649)
T ss_pred --------hh----------------hhcCeeEEEeccccccCC-c--hhhccchHHHhhccccCccC-CHHHHHHHHhh
Confidence 00 012347889999999742 2 47889998764 544321 23899999999
Q ss_pred ccCCcEEE
Q 015966 324 LKDGGVWI 331 (397)
Q Consensus 324 LKPGG~wI 331 (397)
|||.|+.|
T Consensus 468 LkpdgIsI 475 (649)
T KOG0822|consen 468 LKPDGISI 475 (649)
T ss_pred cCCCceEc
Confidence 99999999
No 245
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=93.61 E-value=1.4 Score=43.25 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=89.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
.+...|+. |.-. -++..+||+|+-||.++--+-++|. .|.|+|.++--|.- -|
T Consensus 66 KL~~ale~-F~l~--~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kL-------------------- 119 (245)
T COG1189 66 KLEKALEE-FELD--VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KL-------------------- 119 (245)
T ss_pred HHHHHHHh-cCcC--CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH---hH--------------------
Confidence 45555554 4322 2678999999999999999999997 69999999955421 01
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe-eccCChhhHHHHHHHHHHhccCCcEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~-FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
+.+ .|- ..|=.-+++.+... .-.+..|.|++- =||. +...+..+..+|+|||..
T Consensus 120 ---R~d-~rV----------------~~~E~tN~r~l~~~-~~~~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~ 174 (245)
T COG1189 120 ---RND-PRV----------------IVLERTNVRYLTPE-DFTEKPDLIVIDVSFIS----LKLILPALLLLLKDGGDL 174 (245)
T ss_pred ---hcC-CcE----------------EEEecCChhhCCHH-HcccCCCeEEEEeehhh----HHHHHHHHHHhcCCCceE
Confidence 000 000 12222233332210 112355776653 3554 456789999999999999
Q ss_pred EE-ecCCcchhhhccCC----CCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 331 IN-LGPLLYHFADLYGQ----EDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 331 IN-~GPLlYh~~d~~g~----~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
|- +=|.+-.-.+.-+. .+........+++...++..||.+...
T Consensus 175 v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 175 VLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred EEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 96 33432111111110 111233567899999999999999874
No 246
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=93.42 E-value=1.1 Score=45.98 Aligned_cols=41 Identities=15% Similarity=-0.042 Sum_probs=33.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCC----eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGLGRLALEISHLGF----ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~Gf----~V~GnD~S~~ML~~s~ 228 (397)
.++.+|||+.++-|.=+-.||.+.- .|+++|.|..=|-.-+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~ 199 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR 199 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH
Confidence 4778999999999999888888865 4899999997765444
No 247
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=93.29 E-value=0.41 Score=47.95 Aligned_cols=132 Identities=21% Similarity=0.202 Sum_probs=83.2
Q ss_pred cccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcc
Q 015966 158 DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHT 234 (397)
Q Consensus 158 DWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fiLn~~ 234 (397)
+|.-.=..--+..|.|=++.|...+.- +++.+||+-|.|.|.+.+.||+.= =.+...||-..-. ...+.
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~~~L~i---~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra---~ka~e-- 148 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMILSMLEI---RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRA---EKALE-- 148 (314)
T ss_pred HhhhhccCcceEEecccHHHHHHHhcC---CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHH---HHHHH--
Confidence 354333333456788878888777642 478999999999999999999872 2577788843222 11111
Q ss_pred cccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHH
Q 015966 235 ETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIV 314 (397)
Q Consensus 235 ~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~ 314 (397)
+|. .--++ +++.+..-|.... ++......+|+| |||-. +.-
T Consensus 149 ----eFr-------------------~hgi~----------~~vt~~hrDVc~~-GF~~ks~~aDaV----FLDlP-aPw 189 (314)
T KOG2915|consen 149 ----EFR-------------------EHGIG----------DNVTVTHRDVCGS-GFLIKSLKADAV----FLDLP-APW 189 (314)
T ss_pred ----HHH-------------------HhCCC----------cceEEEEeecccC-CccccccccceE----EEcCC-Chh
Confidence 121 11122 2355666565432 222224667777 67863 467
Q ss_pred HHHHHHHHhccCCc-EEEEecCC
Q 015966 315 EYIEIISRILKDGG-VWINLGPL 336 (397)
Q Consensus 315 ~yi~~I~~~LKPGG-~wIN~GPL 336 (397)
+.+.-.+++||.+| ++.+|-|-
T Consensus 190 ~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 190 EAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred hhhhhhHHHhhhcCceEEeccHH
Confidence 88999999999866 88888774
No 248
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=93.08 E-value=0.66 Score=48.32 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=73.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHcC-C-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 188 ESPPACLVPGAGLGRLALEISHLG-F-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~G-f-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
+.-.+||++|-|-|--++||-+.- + +++-+|+.+.|+..++...-- ...| +-+.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vl-r~~N-------------~~sf---------- 343 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVL-RALN-------------QGSF---------- 343 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHh-hhhc-------------cCCc----------
Confidence 355699999999999999999874 5 699999999999987721100 0001 1011
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh-H-----HHHHHHHHHhccCCcEEEE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-I-----VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N-i-----~~yi~~I~~~LKPGG~wIN 332 (397)
...+++.+..|...+-. ...+.||+|+--+ +|.... + .++.....+.|+++|++|-
T Consensus 344 --------~dpRv~Vv~dDAf~wlr--~a~~~fD~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 344 --------SDPRVTVVNDDAFQWLR--TAADMFDVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred --------cCCeeEEEeccHHHHHH--hhcccccEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence 11247777778777644 2357899986533 332211 1 2567777889999999994
No 249
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=93.02 E-value=0.45 Score=48.15 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=33.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.|||. |.++..+|++ |. .|.+++.+..++..++
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~ 226 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMAR 226 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 567899999998 9999999877 77 5999999999986554
No 250
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=92.99 E-value=0.65 Score=44.80 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=32.1
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s 227 (397)
++.+||+.|+| +|.++.++|++ |..|.+.+-|..++..+
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~ 205 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELA 205 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 56799998877 58999888884 99999999999887543
No 251
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=92.83 E-value=0.36 Score=47.74 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=31.2
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.||| +|.++..+|+. |. .|.+.|.+..-+..++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~ 211 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR 211 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH
Confidence 46799999876 57778888876 88 5899999988776544
No 252
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=92.58 E-value=0.58 Score=45.64 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=30.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMIC 226 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~ 226 (397)
++.+||+-|||. |..+..+|+. |+ .+.+.+-|..+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~ 205 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAV 205 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence 567899988876 8888888764 98 79999998887653
No 253
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=92.55 E-value=0.052 Score=44.74 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=34.7
Q ss_pred cceeEecccccccCCCCCCCCccEEEEeeccCC---hhhHHHHHHHHHHhccCCcEEE
Q 015966 277 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT---AHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 277 ~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt---a~Ni~~yi~~I~~~LKPGG~wI 331 (397)
++.++.||+.+.... ...+++|+| |||- .+.+...++.+...|+|||+.|
T Consensus 50 ~~~~~~g~s~~~l~~-~~~~~~dli----~iDg~H~~~~~~~dl~~~~~~l~~ggviv 102 (106)
T PF13578_consen 50 RVEFIQGDSPDFLPS-LPDGPIDLI----FIDGDHSYEAVLRDLENALPRLAPGGVIV 102 (106)
T ss_dssp TEEEEES-THHHHHH-HHH--EEEE----EEES---HHHHHHHHHHHGGGEEEEEEEE
T ss_pred eEEEEEcCcHHHHHH-cCCCCEEEE----EECCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 488999998876421 112456655 6774 4668889999999999999987
No 254
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=92.40 E-value=0.82 Score=47.95 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=29.9
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (397)
.+.+|++.|+|. |+.+..+++ .|..|..+|.+..-+..|
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A 241 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQA 241 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHH
Confidence 678999999995 666555554 499999999998665443
No 255
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=92.06 E-value=2.9 Score=41.00 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=32.4
Q ss_pred eEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHH
Q 015966 192 ACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSS 228 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~V-~GnD~S~~ML~~s~ 228 (397)
+||++-||.|.+..-|.+.|+++ .++|+....+.+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~ 39 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYE 39 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHH
Confidence 79999999999999999999984 68999999876544
No 256
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=91.54 E-value=0.83 Score=50.01 Aligned_cols=71 Identities=24% Similarity=0.293 Sum_probs=51.3
Q ss_pred cceeEecccccccCCCCCCCCccEEEEeeccC---ChhhH----HHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCC
Q 015966 277 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---TAHNI----VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDE 349 (397)
Q Consensus 277 ~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID---ta~Ni----~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~ 349 (397)
.+.++.||+.+... .....+|+| |+| .+.|. .++|+.|++++||||+|+. |
T Consensus 148 ~l~l~~gd~~~~~~--~~~~~~d~~----~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t-----~----------- 205 (662)
T PRK01747 148 TLDLWFGDANELLP--QLDARADAW----FLDGFAPAKNPDMWSPNLFNALARLARPGATLAT-----F----------- 205 (662)
T ss_pred EEEEEecCHHHHHH--hccccccEE----EeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE-----e-----------
Confidence 37789999987643 122456766 555 33332 4799999999999999995 2
Q ss_pred ccccCCHHHHHHHHHhCCCEEEEE
Q 015966 350 MSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 350 ~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
-+.--|++-|..+||++.+.
T Consensus 206 ----t~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 206 ----TSAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ----ehHHHHHHHHHHcCCeeeec
Confidence 14457888899999999864
No 257
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=91.52 E-value=0.35 Score=46.41 Aligned_cols=75 Identities=24% Similarity=0.165 Sum_probs=49.7
Q ss_pred CccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCC--C-CccccCCHHHHHHHHHhCCCEEEEE
Q 015966 297 AWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE--D-EMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 297 ~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~--~-~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
++|.+++.-+|.++ +.......+++.|||||+++- .=|-.+ .|.. + ..-..++..-+++..+++||+++.|
T Consensus 130 ~~yhdmh~k~i~~~-~A~~vna~vf~~LKPGGv~~V----~dH~a~-pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 130 QNYHDMHNKNIHPA-TAAKVNAAVFKALKPGGVYLV----EDHRAD-PGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred hhhhhhhccccCcc-hHHHHHHHHHHhcCCCcEEEE----Eecccc-CCCChhhhhhhcccChHHHHHHHHhhcceeeee
Confidence 45555555455533 356789999999999999984 223222 1111 1 1123468888999999999999998
Q ss_pred eecC
Q 015966 374 KTIE 377 (397)
Q Consensus 374 ~~i~ 377 (397)
+.|.
T Consensus 204 S~il 207 (238)
T COG4798 204 SEIL 207 (238)
T ss_pred ehhh
Confidence 8654
No 258
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=91.49 E-value=0.17 Score=44.46 Aligned_cols=74 Identities=30% Similarity=0.349 Sum_probs=48.8
Q ss_pred ceeEecccccccCCCCCCCCccEEEEeeccCChhhH----HHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCcccc
Q 015966 278 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI----VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIE 353 (397)
Q Consensus 278 ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni----~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ie 353 (397)
+.+..||..+... .....+|+|+-==|- .+.|. .++|+.|+++++|||++.. |.
T Consensus 33 L~L~~gDa~~~l~--~l~~~~Da~ylDgFs-P~~nPelWs~e~~~~l~~~~~~~~~l~T-----ys-------------- 90 (124)
T PF05430_consen 33 LTLWFGDAREMLP--QLDARFDAWYLDGFS-PAKNPELWSEELFKKLARLSKPGGTLAT-----YS-------------- 90 (124)
T ss_dssp EEEEES-HHHHHH--HB-T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEE-----S---------------
T ss_pred EEEEEcHHHHHHH--hCcccCCEEEecCCC-CcCCcccCCHHHHHHHHHHhCCCcEEEE-----ee--------------
Confidence 8899999987543 224678877432111 12222 4799999999999999996 21
Q ss_pred CCHHHHHHHHHhCCCEEEEEe
Q 015966 354 LSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 354 LS~EEl~~ll~~~GFeii~e~ 374 (397)
+..-|++.|..+||++.+..
T Consensus 91 -~a~~Vr~~L~~aGF~v~~~~ 110 (124)
T PF05430_consen 91 -SAGAVRRALQQAGFEVEKVP 110 (124)
T ss_dssp --BHHHHHHHHHCTEEEEEEE
T ss_pred -chHHHHHHHHHcCCEEEEcC
Confidence 12348889999999998754
No 259
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=91.25 E-value=3.7 Score=41.52 Aligned_cols=55 Identities=13% Similarity=-0.023 Sum_probs=42.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhh
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiL 231 (397)
+++++.+.+.. .++..++|-=+|.|..+..|+++ .-.|.|+|.+..++..++..|
T Consensus 8 ll~Evl~~L~~---~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L 64 (305)
T TIGR00006 8 LLDEVVEGLNI---KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERL 64 (305)
T ss_pred hHHHHHHhcCc---CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 45555555532 25678999999999999999876 257999999999998776443
No 260
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=91.13 E-value=1.1 Score=41.22 Aligned_cols=38 Identities=26% Similarity=0.225 Sum_probs=30.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMIC 226 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~ 226 (397)
++.+||+.|+| +|+.+..+|+. |..|.+.+-+......
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~ 173 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLEL 173 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHH
Confidence 57799999998 58888888774 8999999999866543
No 261
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.77 E-value=0.24 Score=45.73 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=37.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHh
Q 015966 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSF 229 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~f 229 (397)
++.+.+|+|+|-||++..-|+.| +..+|+|+.+-....|++
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl 113 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRL 113 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHH
Confidence 67899999999999999999999 889999999988777764
No 262
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=90.58 E-value=2.6 Score=41.24 Aligned_cols=115 Identities=16% Similarity=0.147 Sum_probs=71.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
||...+.+... .++.|||.+|=|.|-.+-.+-++- +.=.-+|--+.-+.--+ ..+
T Consensus 89 piMha~A~ai~----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr---~~g----------------- 144 (271)
T KOG1709|consen 89 PIMHALAEAIS----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMR---DWG----------------- 144 (271)
T ss_pred HHHHHHHHHHh----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHH---hcc-----------------
Confidence 57777776554 268899999999998877775553 33344555554432100 000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
+ .-.+++-.+.|-..++... -.++.||-|.---|-..-+++.++.+.+.++|||+|+|=
T Consensus 145 w--------------------~ek~nViil~g~WeDvl~~-L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 145 W--------------------REKENVIILEGRWEDVLNT-LPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred c--------------------ccccceEEEecchHhhhcc-ccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEE
Confidence 0 0122355555554443321 125779999654454555788899999999999999987
Q ss_pred E
Q 015966 332 N 332 (397)
Q Consensus 332 N 332 (397)
-
T Consensus 204 y 204 (271)
T KOG1709|consen 204 Y 204 (271)
T ss_pred E
Confidence 4
No 263
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=90.44 E-value=0.54 Score=48.51 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=42.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
+.+=++.|....... .++.-|+||=.|||.|-+--|.-|.-|.|-|+.+-|+-
T Consensus 192 mDAeLSli~AN~Amv--~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vr 244 (421)
T KOG2671|consen 192 MDAELSLIMANQAMV--KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVR 244 (421)
T ss_pred cchhHHHHHhhhhcc--CCCCEEecCccccCceeeehhhhcceeeccccchheee
Confidence 345566666554432 47889999999999999999999999999999998863
No 264
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=89.77 E-value=2.1 Score=42.45 Aligned_cols=39 Identities=10% Similarity=-0.071 Sum_probs=29.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s 227 (397)
++.+||+.|+| +|.++..+|+. |..|.+.+.+..=+..+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a 205 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLA 205 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Confidence 57899999965 66677777775 88899999887655433
No 265
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.58 E-value=1.3 Score=43.19 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=29.7
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
+|.++|+|+ |.++..|++.|++|.+.|.+...+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~ 37 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCE 37 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 688999997 6789999999999999999987654
No 266
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.41 E-value=0.7 Score=47.43 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=27.9
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML 224 (397)
+..+||++|+| .|+.+...++ +|..|+.+|.+..-+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~ 203 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRL 203 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 45689999998 6777666655 599999999987543
No 267
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=88.82 E-value=2.5 Score=40.70 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=31.0
Q ss_pred eEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHH
Q 015966 192 ACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSS 228 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~ 228 (397)
+|+++=||.|.+..-|.+.||+ |.++|++.....+.+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~ 39 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYK 39 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhh
Confidence 7999999999999999999997 569999998776544
No 268
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.82 E-value=1.3 Score=44.40 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=31.3
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+.|+ |+|.++..+|+. |..|.+.+-|..-+.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~ 197 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVD 197 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 6789999998 599999999876 999999998876654
No 269
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=88.77 E-value=0.73 Score=46.23 Aligned_cols=120 Identities=20% Similarity=0.245 Sum_probs=74.0
Q ss_pred Hhccccc-ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcc
Q 015966 156 VRDWAAE-GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHT 234 (397)
Q Consensus 156 ~RDWS~e-G~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~ 234 (397)
+=||-+. ...-|-...+...++|... | .+.-+||.|||-|....-= -..-+.|.|++...+-.|+
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v~qfl~~~-~-----~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak------ 82 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMVRQFLDSQ-P-----TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAK------ 82 (293)
T ss_pred HHHHhhhhccccccCccHHHHHHHhcc-C-----CcceeeecccCCcccCcCC--Ccceeeecchhhhhccccc------
Confidence 4445432 2444555555666666653 2 3567999999999873211 1224678888876543221
Q ss_pred cccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeec---cCChh
Q 015966 235 ETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF---IDTAH 311 (397)
Q Consensus 235 ~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FF---IDta~ 311 (397)
. .+ .-.++.+|++.+ |.....||++++.-+ +-|..
T Consensus 83 -~-------------------~~-------------------~~~~~~ad~l~~---p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 83 -R-------------------SG-------------------GDNVCRADALKL---PFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred -c-------------------CC-------------------CceeehhhhhcC---CCCCCccccchhhhhhhhhhhHH
Confidence 1 10 013456677765 334688999886643 44555
Q ss_pred hHHHHHHHHHHhccCCcEEE
Q 015966 312 NIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 312 Ni~~yi~~I~~~LKPGG~wI 331 (397)
-....++...++|||||.-.
T Consensus 121 RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNAL 140 (293)
T ss_pred HHHHHHHHHHHHhcCCCceE
Confidence 56789999999999999743
No 270
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=88.76 E-value=1.8 Score=42.93 Aligned_cols=31 Identities=39% Similarity=0.405 Sum_probs=25.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeC
Q 015966 189 SPPACLVPGAGL-GRLALEISHL-GFISQGNEF 219 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~V~GnD~ 219 (397)
++.+||+.|+|. |.++..+|+. |..|.+++-
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 567999999874 7788888775 889999886
No 271
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=88.72 E-value=1.2 Score=40.41 Aligned_cols=52 Identities=25% Similarity=0.172 Sum_probs=39.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
.+++.|-+.+.+ ++..||||=||.|..+..-.++|-...|+|++.....+|+
T Consensus 179 ~l~~~lI~~~t~----~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 179 ELIERLIKASTN----PGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHHHS-----TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhhhc----cceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhc
Confidence 355666655542 5789999999999999999999999999999998876654
No 272
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=88.60 E-value=1.2 Score=44.38 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=30.5
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHHH
Q 015966 188 ESPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMICS 227 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~~s 227 (397)
+++.+||+.|+| +|.++..+|+. |.. |.+++-+..-+..+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~ 217 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA 217 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 367899999875 47777778776 885 99999988776544
No 273
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=88.35 E-value=1.2 Score=43.87 Aligned_cols=41 Identities=17% Similarity=0.065 Sum_probs=30.7
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+| +|..+..+|+. |. .|.+++-+..-+..++
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 208 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK 208 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 367799999877 67777888776 88 4889998877665443
No 274
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=88.20 E-value=1.8 Score=42.21 Aligned_cols=38 Identities=21% Similarity=0.111 Sum_probs=28.8
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMIC 226 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~ 226 (397)
++.+||+.|+| +|..+..+|+. |. .|.+++-+......
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~ 207 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDL 207 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 56789998876 58888888776 86 78888887766543
No 275
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=87.74 E-value=2.2 Score=41.62 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=30.0
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+-|+| +|..+..||+. |+.|.+..-|.....
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~ 197 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLE 197 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHH
Confidence 56789998887 48888888887 999999988877654
No 276
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=87.63 E-value=2.1 Score=42.50 Aligned_cols=39 Identities=13% Similarity=-0.156 Sum_probs=28.4
Q ss_pred CCCeEEEecCC-CChhHHHHHHc---CCeEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL---GFISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~---Gf~V~GnD~S~~ML~~s 227 (397)
++.+||+.||| .|.++..+|++ |..|.++|.+..-+..+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a 205 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLF 205 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHH
Confidence 57799999986 45566777763 46799999987665443
No 277
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=87.53 E-value=3.4 Score=40.01 Aligned_cols=37 Identities=27% Similarity=0.242 Sum_probs=31.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+.|+| +|+.+..+|+. |++|.+.+-+..++.
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~ 200 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRE 200 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 56789999997 99998888877 999999999888764
No 278
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.47 E-value=1 Score=42.18 Aligned_cols=62 Identities=23% Similarity=0.404 Sum_probs=47.6
Q ss_pred CCCccEEEE--eeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 295 VGAWDAVVT--CFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 295 ~~~fD~VvT--~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
..+||+|++ |.|+|-.+ ...+++|+.+|+|.|.=+-+.| .-.=|++.+...+..+||.+..
T Consensus 101 q~tFDiIlaADClFfdE~h--~sLvdtIk~lL~p~g~Al~fsP---------------RRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 101 QHTFDIILAADCLFFDEHH--ESLVDTIKSLLRPSGRALLFSP---------------RRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred hCcccEEEeccchhHHHHH--HHHHHHHHHHhCcccceeEecC---------------cccchHHHHHHHHHhceeEEEe
Confidence 368999996 56777654 5789999999999999654333 1235788888999999999876
Q ss_pred E
Q 015966 373 E 373 (397)
Q Consensus 373 e 373 (397)
+
T Consensus 164 ~ 164 (201)
T KOG3201|consen 164 E 164 (201)
T ss_pred c
Confidence 4
No 279
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=87.36 E-value=1.7 Score=41.83 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=30.2
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+.| -|+|.++..+|+. |..|.+..-|..-+.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~ 182 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVA 182 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 678999998 4899999999886 999999888776543
No 280
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=87.32 E-value=1.4 Score=40.21 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=25.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML 224 (397)
.+.+|.++|+ |+++..+|++ |.+|.+.|-+..--
T Consensus 35 ~g~tvgIiG~--G~IG~~vA~~l~~fG~~V~~~d~~~~~~ 72 (178)
T PF02826_consen 35 RGKTVGIIGY--GRIGRAVARRLKAFGMRVIGYDRSPKPE 72 (178)
T ss_dssp TTSEEEEEST--SHHHHHHHHHHHHTT-EEEEEESSCHHH
T ss_pred CCCEEEEEEE--cCCcCeEeeeeecCCceeEEecccCChh
Confidence 5789999966 6677666665 89999999988654
No 281
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=87.28 E-value=1.8 Score=42.43 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=31.1
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
+++.+||+-|+ |+|.++..+|+. |..|.+..-|..-..
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~ 190 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVD 190 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 36789999996 799999999876 999999887776543
No 282
>PRK11524 putative methyltransferase; Provisional
Probab=86.85 E-value=0.77 Score=45.15 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=38.0
Q ss_pred ceeEecccccccCCCCCCCCccEEEEe--eccCCh--------------hhHHHHHHHHHHhccCCcEEEE
Q 015966 278 FSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA--------------HNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 278 ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta--------------~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
-.++.||.+++.. .-.+++||+|+|- |++... .-+.++++.++++|||||.++-
T Consensus 9 ~~i~~gD~~~~l~-~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 9 KTIIHGDALTELK-KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CEEEeccHHHHHH-hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 4578899888532 1235789999994 765210 1134688999999999999874
No 283
>PLN02494 adenosylhomocysteinase
Probab=86.65 E-value=2 Score=46.02 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=24.0
Q ss_pred CCCeEEEecCCC-ChhHHHHH-HcCCeEEEEeCCHHH
Q 015966 189 SPPACLVPGAGL-GRLALEIS-HLGFISQGNEFSYYM 223 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA-~~Gf~V~GnD~S~~M 223 (397)
.+.+|++.|+|. |+.+...+ ..|..|.++|.+..-
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r 289 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPIC 289 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 578999999883 33332222 248899999988753
No 284
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=86.48 E-value=3.5 Score=41.47 Aligned_cols=99 Identities=21% Similarity=0.230 Sum_probs=60.6
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+||+.| .|.|.++..||++ |+.+.+.--|..=...+. +... .+
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~---~lGA---d~------------------------- 190 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLK---ELGA---DH------------------------- 190 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHH---hcCC---CE-------------------------
Confidence 578999998 5889999999987 777777766664433111 1110 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL 336 (397)
-+.+...||.+--........||+|+ |+.- -+++....+.|++||.++.+|.+
T Consensus 191 -----------vi~y~~~~~~~~v~~~t~g~gvDvv~-----D~vG--~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 191 -----------VINYREEDFVEQVRELTGGKGVDVVL-----DTVG--GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred -----------EEcCCcccHHHHHHHHcCCCCceEEE-----ECCC--HHHHHHHHHHhccCCEEEEEecC
Confidence 02233334443211011234699995 4432 26788889999999999987653
No 285
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=85.93 E-value=3.2 Score=43.54 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=26.8
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML 224 (397)
.+.+|++.|+|. |+.+..+++ .|.+|.++|.++.-.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~ 231 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRA 231 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhH
Confidence 577999999986 665444443 488999999888543
No 286
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=85.88 E-value=2.2 Score=41.74 Aligned_cols=35 Identities=31% Similarity=0.204 Sum_probs=29.3
Q ss_pred CeEEEecC--CCChhHHHHHHc-CC-eEEEEeCCHHHHH
Q 015966 191 PACLVPGA--GLGRLALEISHL-GF-ISQGNEFSYYMMI 225 (397)
Q Consensus 191 ~rVLvPGC--GlGRLa~eLA~~-Gf-~V~GnD~S~~ML~ 225 (397)
.+||+-|+ |+|..+..+|+. |. .|.+.+-|..-+.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~ 194 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQ 194 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence 79999986 799999999886 98 7999988876543
No 287
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=85.71 E-value=2.6 Score=41.21 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=25.3
Q ss_pred CCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015966 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GP 335 (397)
..+|+|+.+. . ....++.+.+.|+++|.||++|.
T Consensus 234 ~~~d~vld~~--g----~~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 234 RGVDVVIEAV--G----IPATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred CCCCEEEECC--C----CHHHHHHHHHhccCCcEEEEecc
Confidence 4589987653 1 12357888899999999999874
No 288
>PTZ00357 methyltransferase; Provisional
Probab=85.57 E-value=4.9 Score=45.19 Aligned_cols=105 Identities=20% Similarity=0.201 Sum_probs=58.5
Q ss_pred CeEEEecCCCChhHHHHHHc----C--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 191 PACLVPGAGLGRLALEISHL----G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~----G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
..|+|+|+|.|-|+-..-+. | ++|.++|-.....+ +++.+-.....|. + .. +
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~---~tllr~~N~eeW~---------n---~~-----~-- 759 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAA---FTRMRWANDPEWT---------Q---LA-----Y-- 759 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHH---HHHHHHhcccccc---------c---cc-----c--
Confidence 57999999999996554222 3 57889998843221 1111100111121 0 00 0
Q ss_pred CCCCCCCCCCCCcceeEecccccccCC--------CCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccC
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVYSD--------PSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKD 326 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely~~--------~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKP 326 (397)
..+..+.++..||+++-.. |...+++|+||+-. |=|..- =.+.|.-+.+.||+
T Consensus 760 --------~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGDNEL-SPECLDGaQrfLKd 823 (1072)
T PTZ00357 760 --------TFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGDNEL-SPECLEAFHAQLED 823 (1072)
T ss_pred --------cCCCeEEEEeCcccccccccccccccccccccccceehHhhhcccccccC-CHHHHHHHHHhhhh
Confidence 0123478899999997431 11224799999864 433221 12677777777775
No 289
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=85.57 E-value=6.3 Score=39.67 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=32.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V-~GnD~S~~ML~~s~ 228 (397)
...+|+++=||.|.+..-+...||++ .++|+..+.+.+.+
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~ 42 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYK 42 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHH
Confidence 35689999888888888888889985 59999998876544
No 290
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=85.53 E-value=3.7 Score=41.55 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=26.1
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHcCCeEEEEeCCH
Q 015966 189 SPPACLVPGAGL-GR-LALEISHLGFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCGl-GR-La~eLA~~Gf~V~GnD~S~ 221 (397)
.+.+|.++|+|. |+ +|..|+..|++|.+.|.+.
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~ 179 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYP 179 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCh
Confidence 466899999887 43 5666777799999999876
No 291
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=85.53 E-value=0.61 Score=39.16 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=54.6
Q ss_pred CCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCc
Q 015966 199 GLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEG 277 (397)
Q Consensus 199 GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ 277 (397)
|+|.++..+|+. |..|.+.|-+..=+..++-+ . +. . ++.. +.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~---G--a~-~----~~~~-----~~---------------------- 43 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL---G--AD-H----VIDY-----SD---------------------- 43 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---T--ES-E----EEET-----TT----------------------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh---c--cc-c----cccc-----cc----------------------
Confidence 678999999886 99999999999776544311 1 00 0 0000 00
Q ss_pred ceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015966 278 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 278 ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GP 335 (397)
.. ....+.++.. ...+|+|+.| .. ....++...++|+|||.++.+|-
T Consensus 44 ~~-~~~~i~~~~~----~~~~d~vid~-----~g-~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 44 DD-FVEQIRELTG----GRGVDVVIDC-----VG-SGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp SS-HHHHHHHHTT----TSSEEEEEES-----SS-SHHHHHHHHHHEEEEEEEEEESS
T ss_pred cc-cccccccccc----cccceEEEEe-----cC-cHHHHHHHHHHhccCCEEEEEEc
Confidence 00 0112223322 2579999654 22 24789999999999999998763
No 292
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=85.49 E-value=3.8 Score=43.92 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=24.0
Q ss_pred CCCeEEEecCCC-ChhHHH-HHHcCCeEEEEeCCHHH
Q 015966 189 SPPACLVPGAGL-GRLALE-ISHLGFISQGNEFSYYM 223 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~e-LA~~Gf~V~GnD~S~~M 223 (397)
.+.+|++.|+|. ||.+.. +...|..|...|.+..-
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~ 289 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPIC 289 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 678999999885 444222 23348899999887643
No 293
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=85.41 E-value=5.5 Score=37.52 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=30.7
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMIC 226 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf~-V~GnD~S~~ML~~ 226 (397)
+++.+||+.|+|. |..+..+|+. |.. |.+.+-+...+..
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~ 137 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARREL 137 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHH
Confidence 3678899998875 7788888775 888 9999988877643
No 294
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=85.38 E-value=2.4 Score=41.76 Aligned_cols=82 Identities=22% Similarity=0.269 Sum_probs=51.5
Q ss_pred chhhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCC
Q 015966 143 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFS 220 (397)
Q Consensus 143 ~d~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S 220 (397)
.|-..++..++++.+--. .-.||-..+..+.+++.+..+ ...+|||+|||+==|++.+... +....|.|+.
T Consensus 66 ~D~e~~~~~~r~lL~~Ha--ST~ERl~~Ld~fY~~if~~~~-----~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID 138 (251)
T PF07091_consen 66 GDPEAIRAWCRRLLAGHA--STRERLPNLDEFYDEIFGRIP-----PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDID 138 (251)
T ss_dssp THHHHHHHHHHHHHHTSH--HHHCCGGGHHHHHHHHCCCS--------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESB
T ss_pred CCHHHHHHHHHHHHhhcc--chhhhhhhHHHHHHHHHhcCC-----CCchhhhhhccCCceehhhcccCCCcEEEEEeCC
Confidence 344444444444444322 245676556666666655443 4679999999999998877666 5788999999
Q ss_pred HHHHHHHHhhh
Q 015966 221 YYMMICSSFIL 231 (397)
Q Consensus 221 ~~ML~~s~fiL 231 (397)
..|..+-+-++
T Consensus 139 ~~~ve~l~~~l 149 (251)
T PF07091_consen 139 SQLVEFLNAFL 149 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99987655444
No 295
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=85.29 E-value=3 Score=40.82 Aligned_cols=37 Identities=24% Similarity=0.136 Sum_probs=26.8
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (397)
++.+||+.||| .|.++..+|+. |.. |.+.|.....+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~ 183 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRD 183 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH
Confidence 45689999875 67788888875 887 556777766553
No 296
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=85.29 E-value=4.7 Score=36.11 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=38.2
Q ss_pred ccEEEEeeccCChhhHHHHHHH--HHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 298 WDAVVTCFFIDTAHNIVEYIEI--ISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 298 fD~VvT~FFIDta~Ni~~yi~~--I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
-|+|++|.. ....+.+.+.. +...|++|-+||+.+.... -+..++.+.+.+.|...+.-
T Consensus 58 ~dvvi~~v~--~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p---------------~~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 58 ADVVILCVP--DDDAVEAVLFGENILAGLRPGKIIIDMSTISP---------------ETSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp BSEEEE-SS--SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--H---------------HHHHHHHHHHHHTTEEEEEE
T ss_pred ccceEeecc--cchhhhhhhhhhHHhhccccceEEEecCCcch---------------hhhhhhhhhhhhccceeeee
Confidence 488888644 33457778888 9999999999998544311 12456666777788877763
No 297
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=84.87 E-value=2.9 Score=40.44 Aligned_cols=37 Identities=27% Similarity=0.237 Sum_probs=28.6
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (397)
++.+||+.|+| +|..+..+|+. |+. |.+.+-|.....
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~ 198 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLE 198 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 56799998876 57787777776 777 888888887754
No 298
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.41 E-value=3.4 Score=43.09 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHhccCCcEEEEe
Q 015966 312 NIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 312 Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
-|..||+..+++|.|||.+|-+
T Consensus 203 ~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 203 PIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred hHHHHHHHHHHhccCCCeEEEE
Confidence 3778999999999999999954
No 299
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=84.36 E-value=9.5 Score=37.16 Aligned_cols=34 Identities=9% Similarity=0.032 Sum_probs=28.4
Q ss_pred CeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 015966 191 PACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 191 ~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML 224 (397)
.+|-++|+|. +.++..|++.|+.|.+.|.+..-+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~ 38 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAV 38 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHH
Confidence 3689999997 457899999999999999887554
No 300
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=84.03 E-value=3.6 Score=40.08 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=30.9
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
+++.+||+.|+ |.|.++..+|+. |..|.+.+-|..-+.
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~ 177 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVA 177 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 36789999984 699999999886 999999888876544
No 301
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=83.54 E-value=4.6 Score=40.46 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=30.4
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.|+| +|.++..+|+. |. .|.++|.+..-+..++
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~ 233 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR 233 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 56799999875 46677777775 98 6999999987765443
No 302
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=83.43 E-value=3.6 Score=39.86 Aligned_cols=166 Identities=22% Similarity=0.236 Sum_probs=89.2
Q ss_pred HHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhh
Q 015966 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILN 232 (397)
Q Consensus 155 ~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~fiLn 232 (397)
-+|.|-+. |. .+-..+..-+.....+++.+||=+|+-+|..+--++.- | =.+.|+|||+-+. +-+|+
T Consensus 50 eYR~Wnp~----RS----KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~---reLl~ 118 (231)
T COG1889 50 EYREWNPR----RS----KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM---RELLD 118 (231)
T ss_pred ceeeeCcc----hh----HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH---HHHHH
Confidence 47888754 33 23344433333223457889999999999887666554 3 2489999999886 33444
Q ss_pred cccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccc--cCCCCCCCCccEEEEeeccCCh
Q 015966 233 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDTA 310 (397)
Q Consensus 233 ~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~el--y~~~~~~~~fD~VvT~FFIDta 310 (397)
-+.+. -.|+| +.+|.+.. |. .--+..|+| |.|.|
T Consensus 119 ~a~~R--~Ni~P------------------------------------IL~DA~~P~~Y~--~~Ve~VDvi----y~DVA 154 (231)
T COG1889 119 VAEKR--PNIIP------------------------------------ILEDARKPEKYR--HLVEKVDVI----YQDVA 154 (231)
T ss_pred HHHhC--CCcee------------------------------------eecccCCcHHhh--hhcccccEE----EEecC
Confidence 44321 12333 22443321 21 012345555 44544
Q ss_pred h--hHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCCC
Q 015966 311 H--NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTN 383 (397)
Q Consensus 311 ~--Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~d 383 (397)
+ ...=.+......||+||..+-. +.=---|. +.+ +-+.=.+|+..+. ..||++.+.- ...+|-.|
T Consensus 155 Qp~Qa~I~~~Na~~FLk~~G~~~i~--iKArSIdv--T~d--p~~vf~~ev~kL~-~~~f~i~e~~-~LePye~D 221 (231)
T COG1889 155 QPNQAEILADNAEFFLKKGGYVVIA--IKARSIDV--TAD--PEEVFKDEVEKLE-EGGFEILEVV-DLEPYEKD 221 (231)
T ss_pred CchHHHHHHHHHHHhcccCCeEEEE--EEeecccc--cCC--HHHHHHHHHHHHH-hcCceeeEEe-ccCCcccc
Confidence 2 2334567778889999865521 11001111 111 2234456676655 5689998754 33455544
No 303
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=82.96 E-value=17 Score=35.83 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=27.9
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
+|-++|+|. +.++..|++.|++|.+.|.+..-+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~ 37 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVK 37 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 588889886 4578888999999999999987643
No 304
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=82.74 E-value=5.5 Score=39.07 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=26.8
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (397)
++.+||+-|+| +|..+..+|+. |.. |.+.+-|..-..
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~ 200 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLE 200 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 56788887665 67777777774 886 888877775554
No 305
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=82.73 E-value=4 Score=41.52 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=70.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~---V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
+..+|||+|-|-|....+.+++ -. +.-+|+...-+..+..- +|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y---------------------------------~p 166 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQY---------------------------------LP 166 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHH---------------------------------hH
Confidence 6789999999999999999998 33 33445544332222210 11
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee--ccCChhhH--HHHHHHHHHhccCCcEEEEecCCcc
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTAHNI--VEYIEIISRILKDGGVWINLGPLLY 338 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F--FIDta~Ni--~~yi~~I~~~LKPGG~wIN~GPLlY 338 (397)
.+.-+ --..++.+.-||=..++.. ...+.||+|+|=- -+-.|.++ ..|++.+.+.||+||+.+..|--+|
T Consensus 167 ~la~g--y~~~~v~l~iGDG~~fl~~-~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~w 240 (337)
T KOG1562|consen 167 TLACG--YEGKKVKLLIGDGFLFLED-LKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMW 240 (337)
T ss_pred HHhcc--cCCCceEEEeccHHHHHHH-hccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceeh
Confidence 11100 0123467777886665532 1258999998743 12234443 3699999999999999998765544
No 306
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=82.71 E-value=5.1 Score=39.07 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=28.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (397)
++.+||+.|+|. |..+..+|+. |.. |.+..-|..+..
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~ 198 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLA 198 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence 567899988765 7888788775 887 989888876654
No 307
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=82.39 E-value=4.2 Score=43.90 Aligned_cols=117 Identities=20% Similarity=0.210 Sum_probs=65.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+||++|+|. |..+..+|+ +|..|.+.|.+..-+..++- + . ..+ +.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-l--G---a~~---------------------v~v~~ 215 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-M--G---AEF---------------------LELDF 215 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c--C---CeE---------------------Eeccc
Confidence 568999999986 466666655 49999999999986654441 1 0 000 01000
Q ss_pred CCCCCCCCCCcceeEecccccc--cCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 267 IHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~el--y~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
-.......+. -...-.+|.+. +..+.+-..+|+|+|+-.|+..+...-..+.+-+.+|||++.|++
T Consensus 216 ~e~g~~~~gY-a~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 216 KEEGGSGDGY-AKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred cccccccccc-eeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 0000000000 01111232210 000122356999999988877554334577788999999999964
No 308
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=82.17 E-value=6.6 Score=41.46 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=25.3
Q ss_pred CCCeEEEecCCC-ChhHH-HHHHcCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAGL-GRLAL-EISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~-eLA~~Gf~V~GnD~S~~ML 224 (397)
.+.+|++.|+|. |+.+. .+...|.+|...|.+..-.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra 248 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICA 248 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhh
Confidence 577999999873 33322 2334589999999988654
No 309
>PRK13699 putative methylase; Provisional
Probab=82.15 E-value=4.6 Score=38.75 Aligned_cols=51 Identities=22% Similarity=0.128 Sum_probs=41.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.|.+.+. .++..||||=||.|..+..-.+.|-...|+|++.....++.
T Consensus 152 l~~~~i~~~s----~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~ 202 (227)
T PRK13699 152 SLQPLIESFT----HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQ 202 (227)
T ss_pred HHHHHHHHhC----CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHH
Confidence 4455544443 25779999999999999999999999999999998877665
No 310
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=82.04 E-value=9.5 Score=39.73 Aligned_cols=35 Identities=14% Similarity=-0.027 Sum_probs=29.0
Q ss_pred CeEEEecCCCCh--hHHHHHHcCCeEEEEeCCHHHHH
Q 015966 191 PACLVPGAGLGR--LALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 191 ~rVLvPGCGlGR--La~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
.+|-++|.|.-. +|..|+++|++|.|.|.+..-+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~ 40 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVD 40 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 579999999644 47778999999999999987664
No 311
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=82.02 E-value=2.4 Score=45.19 Aligned_cols=45 Identities=20% Similarity=0.130 Sum_probs=39.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhc
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNH 233 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~ 233 (397)
.+.-||++|.|||-|..--++.|. .|+++|.=-.|.-+|+.|..+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~k 111 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHK 111 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhc
Confidence 567889999999999999999986 499999999999999988743
No 312
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=81.98 E-value=33 Score=33.82 Aligned_cols=126 Identities=20% Similarity=0.179 Sum_probs=68.4
Q ss_pred CCCeEEEecCC-CChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAG-LGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
.+.+||++|=+ +-.||..|....-+|+.+|+..-+|.. |-..+.+ . ++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~f---I~~~a~~-~----------------------gl----- 92 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDF---INRVAEE-E----------------------GL----- 92 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHH---HHHHHHH-H----------------------T------
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHH---HHHHHHH-c----------------------CC-----
Confidence 57799999954 345566666677899999999999853 3222211 0 11
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC---ChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhcc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLY 344 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID---ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~ 344 (397)
.+.....|+++-.. +...++||+++| | |.+-+.-++..-...||.-|-.+- +.|..
T Consensus 93 ---------~i~~~~~DlR~~LP-~~~~~~fD~f~T----DPPyT~~G~~LFlsRgi~~Lk~~g~~gy-----~~~~~-- 151 (243)
T PF01861_consen 93 ---------PIEAVHYDLRDPLP-EELRGKFDVFFT----DPPYTPEGLKLFLSRGIEALKGEGCAGY-----FGFTH-- 151 (243)
T ss_dssp ----------EEEE---TTS----TTTSS-BSEEEE-------SSHHHHHHHHHHHHHTB-STT-EEE-----EEE-T--
T ss_pred ---------ceEEEEecccccCC-HHHhcCCCEEEe----CCCCCHHHHHHHHHHHHHHhCCCCceEE-----EEEec--
Confidence 15566778877433 345689998876 5 556677889888999997663331 22221
Q ss_pred CCCCCccccCC---HHHHHHHHHhCCCEEEEE
Q 015966 345 GQEDEMSIELS---LEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 345 g~~~~~~ieLS---~EEl~~ll~~~GFeii~e 373 (397)
.+-| +-++.+.+..+||.|..-
T Consensus 152 -------~~~s~~~~~~~Q~~l~~~gl~i~di 176 (243)
T PF01861_consen 152 -------KEASPDKWLEVQRFLLEMGLVITDI 176 (243)
T ss_dssp -------TT--HHHHHHHHHHHHTS--EEEEE
T ss_pred -------CcCcHHHHHHHHHHHHHCCcCHHHH
Confidence 1123 347888888999998874
No 313
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=81.96 E-value=8.4 Score=37.80 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=29.4
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMI 225 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (397)
.++.+||+-|+|. |.++..+|+. |.. |.+..-+.....
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~ 201 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLE 201 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 3677999987765 8888888886 887 888888876654
No 314
>KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism]
Probab=81.89 E-value=4.3 Score=41.13 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=54.7
Q ss_pred HHHHHhcccccChhHH--hhch---HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHH
Q 015966 152 IRNIVRDWAAEGKTER--DQCY---KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMIC 226 (397)
Q Consensus 152 L~q~~RDWS~eG~~ER--~~~y---~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~ 226 (397)
+.|+-..|..|=..|- +-++ ..|.+++++++++.. ....-+.+-.-|.|.+--+|++.||+|.|.|++..|..+
T Consensus 209 ~lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~~~~-~~~vPmi~fakG~g~~Le~l~~tG~DVvgLDWTvdp~ea 287 (359)
T KOG2872|consen 209 ALQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLPELG-LAPVPMILFAKGSGGALEELAQTGYDVVGLDWTVDPAEA 287 (359)
T ss_pred HHHHHHHhcccCCHHHHHHhhhHHHHHHHHHHHHhhhhhc-CCCCceEEEEcCcchHHHHHHhcCCcEEeecccccHHHH
Confidence 3456667876544443 1122 346677777777652 345567888999999999999999999999999999875
Q ss_pred HH
Q 015966 227 SS 228 (397)
Q Consensus 227 s~ 228 (397)
-+
T Consensus 288 r~ 289 (359)
T KOG2872|consen 288 RR 289 (359)
T ss_pred HH
Confidence 43
No 315
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=81.38 E-value=3.7 Score=39.47 Aligned_cols=40 Identities=25% Similarity=0.107 Sum_probs=29.5
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~~s~ 228 (397)
++.+||+.|+| +|.++..+|+. |.. |.++|.+..-+..++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~ 162 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELAL 162 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 56789999874 57777777765 887 889998887665443
No 316
>PRK11524 putative methyltransferase; Provisional
Probab=80.87 E-value=8.4 Score=37.87 Aligned_cols=54 Identities=17% Similarity=-0.025 Sum_probs=44.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhh
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiL 231 (397)
+++.|-+.+. .++..||||=||.|..+..-.++|-...|+|++.+-..+|.--+
T Consensus 197 L~erlI~~~S----~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 197 LLKRIILASS----NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred HHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHH
Confidence 5666665554 36789999999999999999999999999999998887776444
No 317
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=80.42 E-value=6.5 Score=38.43 Aligned_cols=38 Identities=29% Similarity=0.225 Sum_probs=28.1
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMIC 226 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~~ 226 (397)
++.+||+.|+| +|.++..+|+. |.. |.+++-+..-+..
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~ 203 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLEL 203 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 57799999874 46666667664 888 9999988766543
No 318
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=80.35 E-value=5.1 Score=39.44 Aligned_cols=39 Identities=23% Similarity=0.060 Sum_probs=28.7
Q ss_pred CCCeEEEecC-CCChhHHHHHHc-CC-eEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGA-GLGRLALEISHL-GF-ISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGC-GlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s 227 (397)
++.+||+.|+ ++|.++..+|+. |+ .|.+.+-+...+..+
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~ 213 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELA 213 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 5678998876 457777777666 88 788998888776543
No 319
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=80.31 E-value=1.7 Score=46.89 Aligned_cols=39 Identities=18% Similarity=0.040 Sum_probs=35.3
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
+..+||.-||||-++.-+|+.--.|.|+|+|+..+.-|+
T Consensus 384 ~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~ 422 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE 422 (534)
T ss_pred CcEEEEEeecCCceehhhhccccceeeeecChhhcchhh
Confidence 457999999999999999998889999999999987665
No 320
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=79.73 E-value=2 Score=40.17 Aligned_cols=37 Identities=24% Similarity=0.389 Sum_probs=27.0
Q ss_pred CCCccEEEEeec------------cCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 295 VGAWDAVVTCFF------------IDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 295 ~~~fD~VvT~FF------------IDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.++||.++|.-. ||..-++ +-+..|.++|||||.+.-
T Consensus 61 ~~~fD~~as~~siEh~GLGRYGDPidp~Gdl-~~m~~i~~vLK~GG~L~l 109 (177)
T PF03269_consen 61 AGSFDFAASFSSIEHFGLGRYGDPIDPIGDL-RAMAKIKCVLKPGGLLFL 109 (177)
T ss_pred hccchhhheechhccccccccCCCCCccccH-HHHHHHHHhhccCCeEEE
Confidence 478999887643 3444433 557788899999999985
No 321
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=79.39 E-value=6.4 Score=42.43 Aligned_cols=71 Identities=25% Similarity=0.341 Sum_probs=49.0
Q ss_pred ccccccCCCCCCCCccEEEEee----ccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHH
Q 015966 284 DFVEVYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDV 359 (397)
Q Consensus 284 DF~ely~~~~~~~~fD~VvT~F----FIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl 359 (397)
|..|-++ ....+||+|-... +.+. -++.+.+-+|-|+|+|||..|- .|. .--.+++
T Consensus 416 DWCE~fs--TYPRTYDLlHA~~lfs~~~~r-C~~~~illEmDRILRP~G~~ii--------RD~---------~~vl~~v 475 (506)
T PF03141_consen 416 DWCEAFS--TYPRTYDLLHADGLFSLYKDR-CEMEDILLEMDRILRPGGWVII--------RDT---------VDVLEKV 475 (506)
T ss_pred chhhccC--CCCcchhheehhhhhhhhccc-ccHHHHHHHhHhhcCCCceEEE--------ecc---------HHHHHHH
Confidence 5444332 3458899987653 2333 3588899999999999999983 111 1246889
Q ss_pred HHHHHhCCCEEEEEe
Q 015966 360 KRVALHYGFEFEKEK 374 (397)
Q Consensus 360 ~~ll~~~GFeii~e~ 374 (397)
+.+++.+.|+.....
T Consensus 476 ~~i~~~lrW~~~~~d 490 (506)
T PF03141_consen 476 KKIAKSLRWEVRIHD 490 (506)
T ss_pred HHHHHhCcceEEEEe
Confidence 999999999876543
No 322
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=79.12 E-value=3.9 Score=37.65 Aligned_cols=45 Identities=20% Similarity=0.099 Sum_probs=32.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCC--CCh-hHHHHHHcCCeEEEEeCCH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAG--LGR-LALEISHLGFISQGNEFSY 221 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCG--lGR-La~eLA~~Gf~V~GnD~S~ 221 (397)
+++.+++.+.+ -.+.+||++|+| .|. ++..|.++|..|+..+-..
T Consensus 31 ~v~l~~~~~~~---l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~ 78 (168)
T cd01080 31 ILELLKRYGID---LAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT 78 (168)
T ss_pred HHHHHHHcCCC---CCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc
Confidence 44555555432 267899999999 398 7888889999887666553
No 323
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=79.02 E-value=5.4 Score=39.71 Aligned_cols=37 Identities=16% Similarity=0.208 Sum_probs=27.9
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (397)
++.+||+-|+| +|.++..+|+. |.. |.+.+-|.....
T Consensus 187 ~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~ 226 (367)
T cd08263 187 PGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLA 226 (367)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHH
Confidence 56788888775 78888788775 888 888887776654
No 324
>PRK10458 DNA cytosine methylase; Provisional
Probab=78.93 E-value=69 Score=34.34 Aligned_cols=40 Identities=13% Similarity=0.021 Sum_probs=33.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V-~GnD~S~~ML~~s~ 228 (397)
.+.+++|+=||.|.+..-+-..|++| .++|+......+.+
T Consensus 87 ~~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~ 127 (467)
T PRK10458 87 YAFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYK 127 (467)
T ss_pred CCceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHH
Confidence 47899999999999988888889975 68999998876544
No 325
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=78.45 E-value=8.2 Score=36.97 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=29.4
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMIC 226 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~ 226 (397)
++.+||+.|+ ++|+++..+|+. |..+....-|...+..
T Consensus 140 ~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~ 180 (334)
T PTZ00354 140 KGQSVLIHAGASGVGTAAAQLAEKYGAATIITTSSEEKVDF 180 (334)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 5678999874 799998888865 8887777777776543
No 326
>PLN02712 arogenate dehydrogenase
Probab=77.81 E-value=10 Score=42.26 Aligned_cols=34 Identities=18% Similarity=0.033 Sum_probs=28.1
Q ss_pred CCCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHH
Q 015966 189 SPPACLVPGAGL--GRLALEISHLGFISQGNEFSYY 222 (397)
Q Consensus 189 ~~~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ 222 (397)
++.+|.++|+|. |.++..|.+.|++|.+.|-+..
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~ 86 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDH 86 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 457899999886 6678888888999999998754
No 327
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=77.74 E-value=10 Score=37.54 Aligned_cols=40 Identities=15% Similarity=-0.067 Sum_probs=33.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~ 228 (397)
++.+|||..||-|.=+..||.+-. .+.++|++..-+..-.
T Consensus 85 ~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~ 127 (283)
T PF01189_consen 85 PGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLK 127 (283)
T ss_dssp TTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHH
T ss_pred ccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHH
Confidence 567899999999999999988854 7999999998876443
No 328
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=77.74 E-value=9.9 Score=37.83 Aligned_cols=37 Identities=16% Similarity=0.092 Sum_probs=27.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (397)
++.+||+-|+| +|..+..+|+. |+. |.+.+-+.....
T Consensus 182 ~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~ 221 (363)
T cd08279 182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLE 221 (363)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHH
Confidence 56789998875 67777777765 886 888887776654
No 329
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=77.52 E-value=9.1 Score=37.25 Aligned_cols=37 Identities=22% Similarity=0.295 Sum_probs=28.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (397)
++.+||+-|+| +|.++..+|++ |.. |.+..-|.....
T Consensus 165 ~g~~VlV~g~g~vg~~~~~la~~~g~~~v~~~~~s~~~~~ 204 (343)
T cd08235 165 PGDTVLVIGAGPIGLLHAMLAKASGARKVIVSDLNEFRLE 204 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 56799998876 78888888776 888 888877776654
No 330
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=77.17 E-value=10 Score=37.15 Aligned_cols=38 Identities=24% Similarity=0.114 Sum_probs=28.3
Q ss_pred CCCeEEEecC-CCChhHHHHHHc-CCeEEEEeCCHHHHHH
Q 015966 189 SPPACLVPGA-GLGRLALEISHL-GFISQGNEFSYYMMIC 226 (397)
Q Consensus 189 ~~~rVLvPGC-GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~ 226 (397)
++.+||+.|+ ++|+.+..+|+. |..|.+++-+...+..
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~ 208 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKED 208 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHH
Confidence 5678999877 456666667664 9999999888776643
No 331
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=77.07 E-value=5.5 Score=39.68 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=74.6
Q ss_pred CeEEEecCCCC--hhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 191 PACLVPGAGLG--RLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 191 ~rVLvPGCGlG--RLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
...||+|||+= ..++|+|++ +..|.=+|..+--+..++-+|....
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~------------------------------ 119 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNP------------------------------ 119 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-T------------------------------
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCC------------------------------
Confidence 47999999975 357999887 6889999999988877776653210
Q ss_pred CCCCCCCCCCCcceeEeccccccc---CCCCCCCCcc-----EEE-E--eeccCChhhHHHHHHHHHHhccCCcEEEE--
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVY---SDPSQVGAWD-----AVV-T--CFFIDTAHNIVEYIEIISRILKDGGVWIN-- 332 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely---~~~~~~~~fD-----~Vv-T--~FFIDta~Ni~~yi~~I~~~LKPGG~wIN-- 332 (397)
.....++++|+++.- ..|...+-+| +|+ . ..|+....+....+.+....|.||.+++-
T Consensus 120 ---------~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish 190 (267)
T PF04672_consen 120 ---------RGRTAYVQADLRDPEAILAHPEVRGLLDFDRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISH 190 (267)
T ss_dssp ---------TSEEEEEE--TT-HHHHHCSHHHHCC--TTS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEE
T ss_pred ---------CccEEEEeCCCCCHHHHhcCHHHHhcCCCCCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEe
Confidence 011467788877531 1111112222 232 2 24787767788999999999999999983
Q ss_pred e-c---CCc-----chhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 333 L-G---PLL-----YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 333 ~-G---PLl-----Yh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
+ . |.- -.|.. ...+ ..--|.+||.+++. ||++++
T Consensus 191 ~t~d~~p~~~~~~~~~~~~--~~~~--~~~Rs~~ei~~~f~--g~elve 233 (267)
T PF04672_consen 191 ATDDGAPERAEALEAVYAQ--AGSP--GRPRSREEIAAFFD--GLELVE 233 (267)
T ss_dssp EB-TTSHHHHHHHHHHHHH--CCS------B-HHHHHHCCT--TSEE-T
T ss_pred cCCCCCHHHHHHHHHHHHc--CCCC--ceecCHHHHHHHcC--CCccCC
Confidence 1 1 100 00110 1111 23359999999995 999986
No 332
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=77.04 E-value=2.7 Score=44.45 Aligned_cols=29 Identities=31% Similarity=0.281 Sum_probs=26.3
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEe
Q 015966 190 PPACLVPGAGLGRL--ALEISHLGFISQGNE 218 (397)
Q Consensus 190 ~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD 218 (397)
...|.|+|+|.|.| |..||++|++|+-.|
T Consensus 3 ~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE 33 (487)
T COG1233 3 MYDVVVIGAGLNGLAAAALLARAGLKVTVLE 33 (487)
T ss_pred CccEEEECCChhHHHHHHHHHhCCCEEEEEE
Confidence 35799999999999 678899999999998
No 333
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=76.79 E-value=13 Score=37.25 Aligned_cols=40 Identities=18% Similarity=0.169 Sum_probs=30.2
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
++.+||+-|+| +|.++..+|+. |. .+.+.+.+...+..++
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~ 228 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAK 228 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 56789998775 47777778775 99 5999999987765443
No 334
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=76.38 E-value=5.1 Score=40.30 Aligned_cols=33 Identities=27% Similarity=0.250 Sum_probs=24.4
Q ss_pred CCCeEEEecCC-CCh-hHHHHHHcCCeEEEEeCCH
Q 015966 189 SPPACLVPGAG-LGR-LALEISHLGFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCG-lGR-La~eLA~~Gf~V~GnD~S~ 221 (397)
.+.+|.++|.| .|+ +|..|...|+.|.+.|.+.
T Consensus 135 ~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~ 169 (312)
T PRK15469 135 EDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSR 169 (312)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 56799999888 475 4555666799999887653
No 335
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=76.14 E-value=11 Score=38.23 Aligned_cols=40 Identities=10% Similarity=-0.175 Sum_probs=31.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~ 228 (397)
++..+||-=-|.|..+..|.++ +-.+.|+|-...|+..|+
T Consensus 20 ~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~ 61 (310)
T PF01795_consen 20 PGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAK 61 (310)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHH
T ss_pred CCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHH
Confidence 5678999999999999999876 568999999999996655
No 336
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=76.01 E-value=16 Score=35.58 Aligned_cols=33 Identities=24% Similarity=0.322 Sum_probs=26.1
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~ 221 (397)
++.+||+.|+ ++|..+..+|+. |..|.++.-+.
T Consensus 177 ~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~~ 212 (350)
T cd08274 177 AGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGAA 212 (350)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCch
Confidence 6789999997 688888888775 89988887543
No 337
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=75.97 E-value=12 Score=38.67 Aligned_cols=34 Identities=15% Similarity=0.123 Sum_probs=25.9
Q ss_pred eEEEecCC-CC-hhHHHHHHcCCeEEEEeCCHHHHHH
Q 015966 192 ACLVPGAG-LG-RLALEISHLGFISQGNEFSYYMMIC 226 (397)
Q Consensus 192 rVLvPGCG-lG-RLa~eLA~~Gf~V~GnD~S~~ML~~ 226 (397)
+|-+.|.| .| .+|..+| .||+|.|+|.+..-+..
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~ 37 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAM 37 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHH
Confidence 57788888 55 4566666 49999999999987653
No 338
>PRK10083 putative oxidoreductase; Provisional
Probab=75.94 E-value=15 Score=35.72 Aligned_cols=39 Identities=13% Similarity=0.126 Sum_probs=28.4
Q ss_pred CCCeEEEecCC-CChhHHHHHH-c-CCe-EEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISH-L-GFI-SQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~-Gf~-V~GnD~S~~ML~~s 227 (397)
++.+||+.|+| +|.++..+|+ + |.. +.+++-+..-+..+
T Consensus 160 ~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~ 202 (339)
T PRK10083 160 EQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALA 202 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHH
Confidence 57799999864 4666777887 3 986 77888887666543
No 339
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=75.69 E-value=14 Score=35.57 Aligned_cols=40 Identities=20% Similarity=0.068 Sum_probs=28.5
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.|+| +|..+..+|+. |..|.+..-+...+..++
T Consensus 155 ~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~ 196 (319)
T cd08242 155 PGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALAR 196 (319)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 57789998753 45555666554 999999998887765443
No 340
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=75.34 E-value=13 Score=36.74 Aligned_cols=36 Identities=28% Similarity=0.230 Sum_probs=28.1
Q ss_pred CCeEEEecCCC--ChhHHHHHHcCC--eEEEEeCCHHHHH
Q 015966 190 PPACLVPGAGL--GRLALEISHLGF--ISQGNEFSYYMMI 225 (397)
Q Consensus 190 ~~rVLvPGCGl--GRLa~eLA~~Gf--~V~GnD~S~~ML~ 225 (397)
..+|.++|+|. +.++..|++.|+ .|.+.|.+..-+.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~ 45 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRA 45 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHH
Confidence 35899999887 456777888885 8999999986553
No 341
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=75.31 E-value=1.9 Score=41.83 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=30.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHHhhhh
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSSFILN 232 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~--V~GnD~S~~ML~~s~fiLn 232 (397)
+++.+.|+|||-|.|..+|+-+--+ +.|.|+=. -++.|+-.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~---KVsdYVk~ 102 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRD---KVSDYVKE 102 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhH---HHHHHHHH
Confidence 4678999999999999999988544 67887753 23455443
No 342
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=75.16 E-value=9 Score=37.74 Aligned_cols=39 Identities=18% Similarity=0.263 Sum_probs=28.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~~s 227 (397)
++.+||+.|+| +|.++..+|+. |.. |.+++-+..-+..+
T Consensus 160 ~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~ 201 (347)
T PRK10309 160 EGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALA 201 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence 56799999875 56667777764 886 78898888766543
No 343
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=75.15 E-value=9.8 Score=40.06 Aligned_cols=43 Identities=21% Similarity=0.091 Sum_probs=34.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhh
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiL 231 (397)
.-..|.|.|+|-|+|+..|+-. |..|.|+|-|.-.-+.|+-+-
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rLd 196 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRLD 196 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHHH
Confidence 3457999999999999999754 889999999977666666443
No 344
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=75.06 E-value=10 Score=35.87 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=29.5
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (397)
++.+||+.|+ ++|.++..+|+. |+.|.+..-+..-.
T Consensus 142 ~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~ 180 (320)
T cd08243 142 PGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERA 180 (320)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5679999885 789999999876 99999888777554
No 345
>PRK06436 glycerate dehydrogenase; Provisional
Probab=74.90 E-value=6 Score=39.70 Aligned_cols=32 Identities=25% Similarity=0.205 Sum_probs=23.4
Q ss_pred CCCeEEEecCC-CChh-HHHHHHcCCeEEEEeCC
Q 015966 189 SPPACLVPGAG-LGRL-ALEISHLGFISQGNEFS 220 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRL-a~eLA~~Gf~V~GnD~S 220 (397)
.+.+|.++|.| .|+- |..+...|++|.+.|-+
T Consensus 121 ~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~ 154 (303)
T PRK06436 121 YNKSLGILGYGGIGRRVALLAKAFGMNIYAYTRS 154 (303)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCC
Confidence 57899999998 4764 44444459999998865
No 346
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=74.73 E-value=22 Score=34.63 Aligned_cols=33 Identities=9% Similarity=0.208 Sum_probs=25.0
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 015966 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML 224 (397)
+|-++|+|. ..++..|++.|++|.+.|.+..-+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~ 35 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVA 35 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHH
Confidence 367787765 336677788899999999998554
No 347
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=74.32 E-value=15 Score=35.56 Aligned_cols=39 Identities=18% Similarity=0.194 Sum_probs=31.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s 227 (397)
.+.+|||.|+|.|--+..-|+.|. .|.+.|+.+....+.
T Consensus 79 rgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai 118 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAI 118 (218)
T ss_pred ccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHh
Confidence 678999999999999999999996 477778776554433
No 348
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=73.54 E-value=20 Score=36.76 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=45.1
Q ss_pred CchhhHHHHHHHHHHhccccc-C--hhHHhhchHHHHHHHHh-----hCCCCCCCCCCeEEEec-CCC--ChhHHHHHHc
Q 015966 142 LADVDKVRCIIRNIVRDWAAE-G--KTERDQCYKPILEELDA-----LFPNRSKESPPACLVPG-AGL--GRLALEISHL 210 (397)
Q Consensus 142 ~~d~dkv~stL~q~~RDWS~e-G--~~ER~~~y~pIl~~L~~-----~~p~~~~~~~~rVLvPG-CGl--GRLa~eLA~~ 210 (397)
-.|-++.+..|..+ |.|+.+ | ...=...|..|++.-.+ .+... .....+|.++| .|+ |.++..|.+.
T Consensus 44 v~d~~Re~~vl~~~-~~~~~~~~l~~~~~~~i~~~i~~~s~~~q~~~~~~~~-~~~~~~I~IiGG~GlmG~slA~~l~~~ 121 (374)
T PRK11199 44 IYVPEREAAMLASR-RAEAEALGVPPDLIEDVLRRVMRESYSSENDKGFKTL-NPDLRPVVIVGGKGQLGRLFAKMLTLS 121 (374)
T ss_pred CCChHHHHHHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHhHHhccccc-CcccceEEEEcCCChhhHHHHHHHHHC
Confidence 35556666666555 445542 2 12223456666644332 11111 11346899998 666 6667888888
Q ss_pred CCeEEEEeCCH
Q 015966 211 GFISQGNEFSY 221 (397)
Q Consensus 211 Gf~V~GnD~S~ 221 (397)
|+.|++.|.+.
T Consensus 122 G~~V~~~d~~~ 132 (374)
T PRK11199 122 GYQVRILEQDD 132 (374)
T ss_pred CCeEEEeCCCc
Confidence 99999999753
No 349
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=73.52 E-value=8.3 Score=40.01 Aligned_cols=100 Identities=17% Similarity=0.142 Sum_probs=60.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
.+.+|||+=+|+|-=+...|+. | -.|+.||+|.......+.-+.. + .+.
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~----N----------------------~~~-- 100 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLEL----N----------------------GLE-- 100 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHH----C----------------------T-S--
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhh----c----------------------ccc--
Confidence 3579999999999766666666 3 4799999999977654422110 0 000
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
. +.+.+..+|...+.. ...+.||+| =||.---...||+...+.+|.||++-
T Consensus 101 ---~------~~~~v~~~DAn~ll~--~~~~~fD~I----DlDPfGSp~pfldsA~~~v~~gGll~ 151 (377)
T PF02005_consen 101 ---D------ERIEVSNMDANVLLY--SRQERFDVI----DLDPFGSPAPFLDSALQAVKDGGLLC 151 (377)
T ss_dssp ---G------CCEEEEES-HHHHHC--HSTT-EEEE----EE--SS--HHHHHHHHHHEEEEEEEE
T ss_pred ---C------ceEEEehhhHHHHhh--hccccCCEE----EeCCCCCccHhHHHHHHHhhcCCEEE
Confidence 0 125566677666531 135789987 25654446689999999999999988
No 350
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=73.52 E-value=51 Score=32.46 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=27.1
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 015966 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML 224 (397)
+|-++|+|. ..++..|++.|++|.+.|.+..-+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~ 36 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAV 36 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 688888885 447888888999999999998554
No 351
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.17 E-value=6.5 Score=39.79 Aligned_cols=52 Identities=29% Similarity=0.295 Sum_probs=35.5
Q ss_pred HHHHHHhhCCCCCC-CCCCeEEEec--CCCChh-HHHHHHcCCeEEEEeCCHHHHH
Q 015966 174 ILEELDALFPNRSK-ESPPACLVPG--AGLGRL-ALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 174 Il~~L~~~~p~~~~-~~~~rVLvPG--CGlGRL-a~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
+++.+...+|.... -.+..||+=| .|+||+ |.|+|++|..+.-.|+-..-..
T Consensus 21 ~~s~~~~~l~~~~k~v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~ 76 (300)
T KOG1201|consen 21 LESLIKLLLPKPLKSVSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNE 76 (300)
T ss_pred HHHHHHHhcccchhhccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchH
Confidence 44555555554221 2678889875 567887 9999999998888887665443
No 352
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=73.14 E-value=15 Score=36.94 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=26.5
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYM 223 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~M 223 (397)
++.+||+.|+| +|.++..+|+. |..|.+++.+..-
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~ 219 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNK 219 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcch
Confidence 56789998875 57777777765 9988888877543
No 353
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=72.91 E-value=5.9 Score=37.42 Aligned_cols=55 Identities=18% Similarity=0.175 Sum_probs=39.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhh
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiL 231 (397)
++.+|.+.+|.. ...+++||=||.|..++.+...|..|..||+...-..+.+.++
T Consensus 8 l~~~I~~~ip~~---~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 8 LAKWIIELIPKN---KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp GHHHHHHHS-S----S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHcCCC---CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHHHH
Confidence 677788888842 4679999999999999999889999999999998877777344
No 354
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=72.87 E-value=3.9 Score=41.01 Aligned_cols=55 Identities=16% Similarity=0.111 Sum_probs=40.6
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHH
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMM 224 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML 224 (397)
|--.+++.|.+.+...-.-.+.|||++|||.|-........| ..|...|+|..-|
T Consensus 97 cS~dl~~~l~~e~~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl 152 (282)
T KOG2920|consen 97 CSVDLLPYLKEEIGAQMSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVL 152 (282)
T ss_pred cHHHHHHHHHHHhhhheEecCceeEecCCcccccchhhhhhccceeeeEecchhhe
Confidence 344566677654411111267899999999999999999999 7888999998665
No 355
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=72.59 E-value=3.4 Score=39.65 Aligned_cols=29 Identities=28% Similarity=0.255 Sum_probs=23.6
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
.|+++|+|.+.+ |..|+++|++|.-+|-+
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 699999999988 67889999999999854
No 356
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=72.31 E-value=16 Score=36.05 Aligned_cols=37 Identities=27% Similarity=0.206 Sum_probs=26.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~ 225 (397)
++.+||+.|+| +|..+..+|+. |. .|.+++-+..-+.
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~ 216 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLE 216 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHH
Confidence 56789988754 45666667665 88 8999988776553
No 357
>PRK08507 prephenate dehydrogenase; Validated
Probab=72.30 E-value=21 Score=34.57 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=26.6
Q ss_pred eEEEecCCC--ChhHHHHHHcCC--eEEEEeCCHHHH
Q 015966 192 ACLVPGAGL--GRLALEISHLGF--ISQGNEFSYYMM 224 (397)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf--~V~GnD~S~~ML 224 (397)
+|.++|+|. |.++..|++.|+ .|.+.|.+..-+
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~ 38 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHL 38 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHH
Confidence 688899887 667888888896 789999987654
No 358
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=72.22 E-value=14 Score=36.06 Aligned_cols=37 Identities=19% Similarity=0.129 Sum_probs=28.1
Q ss_pred CCCeEEEecC-CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGA-GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGC-GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+.|+ ++|.++..+|+. |..|.+..-|.....
T Consensus 165 ~~~~vlV~g~g~vg~~~~~~a~~~G~~vi~~~~~~~~~~ 203 (345)
T cd08260 165 PGEWVAVHGCGGVGLSAVMIASALGARVIAVDIDDDKLE 203 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEeCCHHHHH
Confidence 5679999987 467777777764 999999988876653
No 359
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=72.18 E-value=21 Score=33.83 Aligned_cols=37 Identities=30% Similarity=0.259 Sum_probs=29.0
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+.|+ |+|..+..+|+. |..|.+.+-+..-+.
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~ 171 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVGSPARAE 171 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 4679999987 688888888775 899988887765543
No 360
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=71.88 E-value=1e+02 Score=30.11 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=45.2
Q ss_pred eccCChhhHHHHHHHHHHhccCCcEEEE--ecCCcc---h--hhh----ccC-CCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 305 FFIDTAHNIVEYIEIISRILKDGGVWIN--LGPLLY---H--FAD----LYG-QEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 305 FFIDta~Ni~~yi~~I~~~LKPGG~wIN--~GPLlY---h--~~d----~~g-~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
+|++.. .+...|+.|.+...||+.++- ++|+-= . ... ..+ ..+...+.++.+|+.+++...||+...
T Consensus 169 ~YL~~~-~v~~ll~~i~~~~~~gs~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gw~~~~ 247 (260)
T TIGR00027 169 MYLTEE-AVDALLAFIAELSAPGSRLAFDYVRPLDGEWRAGMRAPVYHAARGVDGSGLVFGIDRADVAEWLAERGWRASE 247 (260)
T ss_pred hcCCHH-HHHHHHHHHHHhCCCCcEEEEEeccccchhHHHHHHHHHHHhhhcccccccccCCChhhHHHHHHHCCCeeec
Confidence 467764 488999999999889888774 455310 0 010 000 012234567899999999999999876
Q ss_pred E
Q 015966 373 E 373 (397)
Q Consensus 373 e 373 (397)
.
T Consensus 248 ~ 248 (260)
T TIGR00027 248 H 248 (260)
T ss_pred C
Confidence 4
No 361
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=71.79 E-value=3.6 Score=43.00 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=26.3
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
.+|+++|+|.|.| |..||++|++|.-+|-.
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~ 33 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQH 33 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecC
Confidence 4699999999999 67789999999999855
No 362
>PRK08339 short chain dehydrogenase; Provisional
Probab=71.59 E-value=65 Score=30.56 Aligned_cols=36 Identities=14% Similarity=0.026 Sum_probs=28.0
Q ss_pred CCCeEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGA--GLGR-LALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGC--GlGR-La~eLA~~Gf~V~GnD~S~~ML 224 (397)
++.++|+-|+ |.|+ ++..|+++|++|...+.+..-+
T Consensus 7 ~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~ 45 (263)
T PRK08339 7 SGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENL 45 (263)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 4568999997 4555 5788899999999998886544
No 363
>PRK13243 glyoxylate reductase; Reviewed
Probab=71.51 E-value=11 Score=38.09 Aligned_cols=33 Identities=15% Similarity=0.046 Sum_probs=24.0
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHcCCeEEEEeCCH
Q 015966 189 SPPACLVPGAGL-GR-LALEISHLGFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCGl-GR-La~eLA~~Gf~V~GnD~S~ 221 (397)
.+.+|.++|.|. |+ +|..|...|+.|.+.|-+.
T Consensus 149 ~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~ 183 (333)
T PRK13243 149 YGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR 183 (333)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence 578999999875 43 3455555688999988764
No 364
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=71.09 E-value=23 Score=33.47 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=26.0
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCC
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFS 220 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S 220 (397)
++.+||+.|+ ++|..+..+|+. |.+|.+.+-+
T Consensus 143 ~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~ 177 (319)
T cd08267 143 PGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST 177 (319)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH
Confidence 5679999997 588888888876 9999888744
No 365
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=71.03 E-value=15 Score=35.27 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=28.3
Q ss_pred CCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 190 PPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 190 ~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
+.+||+.|+ ++|.++..+|+. |..|...+-+..-+.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~ 185 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGKADAAD 185 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecCHHHHH
Confidence 568999986 678888888775 999998888876543
No 366
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=70.98 E-value=13 Score=34.77 Aligned_cols=37 Identities=24% Similarity=0.162 Sum_probs=29.8
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+.|+ ++|..+..+|+. |+.|.+.+-+...+.
T Consensus 136 ~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~ 175 (320)
T cd05286 136 PGDTVLVHAAAGGVGLLLTQWAKALGATVIGTVSSEEKAE 175 (320)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 5679999994 688888888776 999999988877654
No 367
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=70.95 E-value=56 Score=32.20 Aligned_cols=34 Identities=18% Similarity=0.143 Sum_probs=26.0
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
+|-++|+|. +.++..|++.|+.|.+.|.+...+.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~ 37 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVD 37 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 577887775 4467777888999999999886543
No 368
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=70.89 E-value=15 Score=34.89 Aligned_cols=36 Identities=28% Similarity=0.345 Sum_probs=27.2
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML 224 (397)
++.+||+.|+ |.|..+..+++ .|+.|...+-+..-+
T Consensus 166 ~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~~~~~~~~~~ 204 (342)
T cd08266 166 PGETVLVHGAGSGVGSAAIQIAKLFGATVIATAGSEDKL 204 (342)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 5678998886 57888777765 499999888877554
No 369
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=70.37 E-value=17 Score=39.97 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=26.0
Q ss_pred CCCeEEEecC--CCChh-HHHHHHcCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGA--GLGRL-ALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRL-a~eLA~~Gf~V~GnD~S~~ML 224 (397)
.+.+||+.|+ |+|+. +..|+++|++|.++.-+..-+
T Consensus 79 ~gKvVLVTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl 117 (576)
T PLN03209 79 DEDLAFVAGATGKVGSRTVRELLKLGFRVRAGVRSAQRA 117 (576)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 4567899987 45543 556778899999988776543
No 370
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=70.35 E-value=21 Score=34.91 Aligned_cols=37 Identities=22% Similarity=0.281 Sum_probs=26.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~ 225 (397)
++.+||+-|+|. |..+..+|+. |. .|.+.+-|..-+.
T Consensus 163 ~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~ 202 (341)
T PRK05396 163 VGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLE 202 (341)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence 567888877754 7777778764 88 5778777776554
No 371
>PRK12939 short chain dehydrogenase; Provisional
Probab=70.16 E-value=20 Score=32.85 Aligned_cols=36 Identities=28% Similarity=0.213 Sum_probs=25.4
Q ss_pred CCCeEEEecC--CCChh-HHHHHHcCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGA--GLGRL-ALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRL-a~eLA~~Gf~V~GnD~S~~ML 224 (397)
++.+||+.|+ |+|+. +..|+++|+.|.+.+-+..-+
T Consensus 6 ~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~ 44 (250)
T PRK12939 6 AGKRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEA 44 (250)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 4568999996 44433 455667899999998776544
No 372
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=70.15 E-value=23 Score=33.46 Aligned_cols=31 Identities=26% Similarity=0.045 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCC--hhHHHHHHcCCeEEEEeC
Q 015966 189 SPPACLVPGAGLG--RLALEISHLGFISQGNEF 219 (397)
Q Consensus 189 ~~~rVLvPGCGlG--RLa~eLA~~Gf~V~GnD~ 219 (397)
.+.+||++|.|.= |-+..|.+.|..|+-++-
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp 40 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLKAGAQLRVIAE 40 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcC
Confidence 4669999999953 446778888999887743
No 373
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=70.05 E-value=33 Score=33.97 Aligned_cols=31 Identities=23% Similarity=0.072 Sum_probs=26.3
Q ss_pred CeEEEecCCC-C-hhHHHHHHcCCeEEEEeCCH
Q 015966 191 PACLVPGAGL-G-RLALEISHLGFISQGNEFSY 221 (397)
Q Consensus 191 ~rVLvPGCGl-G-RLa~eLA~~Gf~V~GnD~S~ 221 (397)
.+|.++|+|. | .+|..|++.|++|++++-+.
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~ 35 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRAR 35 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHH
Confidence 4799999994 4 56899999999999999875
No 374
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=69.97 E-value=5.3 Score=40.67 Aligned_cols=33 Identities=27% Similarity=0.335 Sum_probs=26.3
Q ss_pred CCCeEEEecCC-CCh-hHHHHHHcCC-eEEEEeCCH
Q 015966 189 SPPACLVPGAG-LGR-LALEISHLGF-ISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCG-lGR-La~eLA~~Gf-~V~GnD~S~ 221 (397)
.+.+||++||| +|. ++..||+.|. .++-+|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 35689999999 555 4778899998 678888876
No 375
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=69.70 E-value=26 Score=32.70 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=25.3
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~ 221 (397)
++.+||+.|+ ++|..+..+|+. |..|....-+.
T Consensus 144 ~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~ 179 (309)
T cd05289 144 AGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA 179 (309)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch
Confidence 5679999986 577777777664 89988887665
No 376
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.67 E-value=49 Score=33.14 Aligned_cols=36 Identities=22% Similarity=0.297 Sum_probs=30.2
Q ss_pred EEEecCCCChhHHHHHHcCCeEE-EEeCCHHHHHHHH
Q 015966 193 CLVPGAGLGRLALEISHLGFISQ-GNEFSYYMMICSS 228 (397)
Q Consensus 193 VLvPGCGlGRLa~eLA~~Gf~V~-GnD~S~~ML~~s~ 228 (397)
||++=||.|.+..-|-+.||++. ++|+......+.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~ 37 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYE 37 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHH
Confidence 57888999999999999999965 7999998876544
No 377
>PRK07233 hypothetical protein; Provisional
Probab=69.44 E-value=3.9 Score=41.11 Aligned_cols=29 Identities=21% Similarity=0.253 Sum_probs=25.0
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
+|+|+|+|.+.| |+.|+++|++|+-+|-.
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~ 31 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEAD 31 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeC
Confidence 589999999999 67899999998887744
No 378
>PLN02256 arogenate dehydrogenase
Probab=69.40 E-value=29 Score=34.82 Aligned_cols=33 Identities=18% Similarity=0.002 Sum_probs=26.7
Q ss_pred CCCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCH
Q 015966 189 SPPACLVPGAGL--GRLALEISHLGFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~ 221 (397)
...+|.++|+|. |.++..|.+.|++|.+.|-+.
T Consensus 35 ~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~ 69 (304)
T PLN02256 35 RKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSD 69 (304)
T ss_pred CCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECcc
Confidence 567899999875 446777777899999999886
No 379
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=69.35 E-value=20 Score=35.35 Aligned_cols=33 Identities=18% Similarity=0.101 Sum_probs=27.5
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 015966 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML 224 (397)
+|-++|+|. +.++..|++.|+.|++.|.+..-+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~ 37 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAV 37 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHH
Confidence 688888886 667888888999999999987654
No 380
>PRK07574 formate dehydrogenase; Provisional
Probab=69.28 E-value=12 Score=39.04 Aligned_cols=33 Identities=12% Similarity=0.026 Sum_probs=23.7
Q ss_pred CCCeEEEecCCC-Chh-HHHHHHcCCeEEEEeCCH
Q 015966 189 SPPACLVPGAGL-GRL-ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRL-a~eLA~~Gf~V~GnD~S~ 221 (397)
.+.+|.++|.|. |+. |..|...|++|.+.|-+.
T Consensus 191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~ 225 (385)
T PRK07574 191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHR 225 (385)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence 567899998873 653 444555688999988664
No 381
>PRK08655 prephenate dehydrogenase; Provisional
Probab=69.27 E-value=18 Score=38.04 Aligned_cols=33 Identities=21% Similarity=0.154 Sum_probs=25.7
Q ss_pred eEEEec-CC-CCh-hHHHHHHcCCeEEEEeCCHHHH
Q 015966 192 ACLVPG-AG-LGR-LALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 192 rVLvPG-CG-lGR-La~eLA~~Gf~V~GnD~S~~ML 224 (397)
+|+++| +| .|+ ++..|.+.|++|++.+-+...+
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~ 37 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKG 37 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHH
Confidence 689997 56 454 6777788899999999887653
No 382
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=68.99 E-value=26 Score=35.41 Aligned_cols=41 Identities=24% Similarity=0.207 Sum_probs=32.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-C-CeEEEEeCCHHHHHHHHh
Q 015966 189 SPPACLVPGAGL-GRLALEISHL-G-FISQGNEFSYYMMICSSF 229 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-G-f~V~GnD~S~~ML~~s~f 229 (397)
.+.+||+.|||. |-++..+|+. | ..|..+|.+..=|..|+.
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 344899999995 7777777776 5 478899999999887763
No 383
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=68.63 E-value=21 Score=34.99 Aligned_cols=35 Identities=23% Similarity=0.421 Sum_probs=24.3
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYM 223 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~M 223 (397)
++.+||+-|+|. |+++..+|+. |. .|.+.+-|..=
T Consensus 163 ~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~ 200 (341)
T cd05281 163 SGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYR 200 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHH
Confidence 567899877653 7777777765 87 68787666543
No 384
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.49 E-value=2.8 Score=39.11 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=46.7
Q ss_pred CCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecC-Ccch---hhh-c-cCC-CC----CccccCCHHHH
Q 015966 293 SQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGP-LLYH---FAD-L-YGQ-ED----EMSIELSLEDV 359 (397)
Q Consensus 293 ~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GP-LlYh---~~d-~-~g~-~~----~~~ieLS~EEl 359 (397)
+.+++.|+|.+-.++. |-..-...++..++.|||||++-..-| +.|. |.. . -|+ .| ...+-.+..++
T Consensus 43 F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl~f~~~~Y~~~vqvggpgpndhP~~r~v~t~r~m 122 (185)
T COG4627 43 FEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDLKFLDWLYQHDVQVGGPGPNDHPLHRIVKTMRMM 122 (185)
T ss_pred CCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCcchhHHHHhhhhhccCCCCCCCcHHHHHHHHHHH
Confidence 3468899988765543 334466889999999999999875433 3332 211 1 111 11 11222366666
Q ss_pred HHHHHhCCCEE
Q 015966 360 KRVALHYGFEF 370 (397)
Q Consensus 360 ~~ll~~~GFei 370 (397)
..++..+||..
T Consensus 123 ~n~~m~~~~~~ 133 (185)
T COG4627 123 FNGFMDAGFVV 133 (185)
T ss_pred HHHHHhhhhee
Confidence 66666677654
No 385
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=68.12 E-value=14 Score=37.19 Aligned_cols=35 Identities=14% Similarity=0.026 Sum_probs=25.5
Q ss_pred CCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015966 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GP 335 (397)
..+|+|+.+.. . -...+..+.++|+++|.+|.+|.
T Consensus 274 ~gvDvvld~~g-~----~~~~~~~~~~~l~~~G~~v~~g~ 308 (384)
T cd08265 274 WGADIQVEAAG-A----PPATIPQMEKSIAINGKIVYIGR 308 (384)
T ss_pred CCCCEEEECCC-C----cHHHHHHHHHHHHcCCEEEEECC
Confidence 35899986533 1 12457788899999999999874
No 386
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=68.09 E-value=5.8 Score=37.13 Aligned_cols=33 Identities=27% Similarity=0.239 Sum_probs=26.2
Q ss_pred CCCeEEEecCC-CCh-hHHHHHHcCC-eEEEEeCCH
Q 015966 189 SPPACLVPGAG-LGR-LALEISHLGF-ISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCG-lGR-La~eLA~~Gf-~V~GnD~S~ 221 (397)
.+.+||+.||| +|. .+..||+.|. +++-+|...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCE
Confidence 45689999998 566 4788899998 788888763
No 387
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=67.82 E-value=45 Score=31.21 Aligned_cols=37 Identities=24% Similarity=0.250 Sum_probs=29.8
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+.|| ++|..+..+|+. |..|.+++.+.....
T Consensus 139 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~ 178 (323)
T cd08241 139 PGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLA 178 (323)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHH
Confidence 5679999997 578887777765 999999998877654
No 388
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=67.50 E-value=30 Score=34.28 Aligned_cols=33 Identities=21% Similarity=0.144 Sum_probs=27.1
Q ss_pred CCCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCH
Q 015966 189 SPPACLVPGAGL--GRLALEISHLGFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~ 221 (397)
...+|+++|+|. |.+|..|++.|++|+.+.-+.
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 456899999995 557999999999998777664
No 389
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=67.42 E-value=31 Score=31.19 Aligned_cols=115 Identities=12% Similarity=0.077 Sum_probs=59.5
Q ss_pred eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCC
Q 015966 213 ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDP 292 (397)
Q Consensus 213 ~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~ 292 (397)
+|.|.|+=...+..++-.|....- ..++.++..+-..+...-
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~--------------------------------------~~~v~li~~sHe~l~~~i 42 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGL--------------------------------------EDRVTLILDSHENLDEYI 42 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT---------------------------------------GSGEEEEES-GGGGGGT-
T ss_pred CEEEEECHHHHHHHHHHHHHhcCC--------------------------------------CCcEEEEECCHHHHHhhC
Confidence 488999999998877755542211 112445554433332100
Q ss_pred CCCCCccEEEEee-cc--------CChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCcccc-CCHHHHHHH
Q 015966 293 SQVGAWDAVVTCF-FI--------DTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIE-LSLEDVKRV 362 (397)
Q Consensus 293 ~~~~~fD~VvT~F-FI--------Dta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ie-LS~EEl~~l 362 (397)
..+..|+|+-++ || ..++.-+..++.+.++|+|||+.+- ..|.-.+ +...| -..++..+-
T Consensus 43 -~~~~v~~~iFNLGYLPggDk~i~T~~~TTl~Al~~al~lL~~gG~i~i---v~Y~GH~------gG~eE~~av~~~~~~ 112 (140)
T PF06962_consen 43 -PEGPVDAAIFNLGYLPGGDKSITTKPETTLKALEAALELLKPGGIITI---VVYPGHP------GGKEESEAVEEFLAS 112 (140)
T ss_dssp --S--EEEEEEEESB-CTS-TTSB--HHHHHHHHHHHHHHEEEEEEEEE---EE--STC------HHHHHHHHHHHHHHT
T ss_pred -ccCCcCEEEEECCcCCCCCCCCCcCcHHHHHHHHHHHHhhccCCEEEE---EEeCCCC------CCHHHHHHHHHHHHh
Confidence 114788887664 43 3445566889999999999999995 3453111 01111 123333333
Q ss_pred HHhCCCEEEEEee
Q 015966 363 ALHYGFEFEKEKT 375 (397)
Q Consensus 363 l~~~GFeii~e~~ 375 (397)
+...-|.+.+-+.
T Consensus 113 L~~~~~~V~~~~~ 125 (140)
T PF06962_consen 113 LDQKEFNVLKYQF 125 (140)
T ss_dssp S-TTTEEEEEEEE
T ss_pred CCcceEEEEEEEc
Confidence 4456788877553
No 390
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=67.30 E-value=18 Score=36.86 Aligned_cols=145 Identities=16% Similarity=0.201 Sum_probs=78.1
Q ss_pred HhhchHHHHHHHHhhCCCCC----------CCCCCeEEEecCCCChhHHHHHHcC----------------------CeE
Q 015966 167 RDQCYKPILEELDALFPNRS----------KESPPACLVPGAGLGRLALEISHLG----------------------FIS 214 (397)
Q Consensus 167 R~~~y~pIl~~L~~~~p~~~----------~~~~~rVLvPGCGlGRLa~eLA~~G----------------------f~V 214 (397)
|..||.-|+..|.++..... ..+..+||.+|-|.|--.+.||..= ..+
T Consensus 54 RAL~Yaslf~~l~~~l~~~~~~~~~~~~~~~~~~~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~i 133 (315)
T PF11312_consen 54 RALAYASLFASLKEHLELLSCPEDESDEDEEKKSLRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSI 133 (315)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccccccCceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceE
Confidence 66789999988877664221 1234799999999987655554332 367
Q ss_pred EEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCC--
Q 015966 215 QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDP-- 292 (397)
Q Consensus 215 ~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~-- 292 (397)
+.+|+..---.+.+ |+.+ ++--|-+..+.+ ....|.+.+.. =++.|.++|...+-...
T Consensus 134 tlvDiAdWs~VV~~--L~~~-----i~s~p~~sk~a~---------~~~~~~~~~~~----~~~~F~~~DvL~~~~~~l~ 193 (315)
T PF11312_consen 134 TLVDIADWSSVVDR--LTTT-----ITSPPPLSKYAS---------AANWPLIEPDR----FNVSFTQQDVLSLSEDDLK 193 (315)
T ss_pred EEEEecChHHHHHH--HHHh-----ccCCCCcccccc---------ccccccCCccc----eeeeEEecccccCChHHHH
Confidence 77777554433333 2211 111122211111 01111121111 13788888887753210
Q ss_pred C--CCCCccEEEEeec------cCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 293 S--QVGAWDAVVTCFF------IDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 293 ~--~~~~fD~VvT~FF------IDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
. ....-+.| |.+| -.....=..+|..+...+|||-+++-
T Consensus 194 ~ll~~~~~~LI-TLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLV 240 (315)
T PF11312_consen 194 SLLGPPSPDLI-TLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLV 240 (315)
T ss_pred HHhccchhHHH-HHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEE
Confidence 0 00134444 5543 22233345789999999999999884
No 391
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=67.12 E-value=22 Score=33.72 Aligned_cols=35 Identities=11% Similarity=0.162 Sum_probs=25.3
Q ss_pred CCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC
Q 015966 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (397)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL 336 (397)
..+|+|+.+.- . ...+....++|+++|.+|++|..
T Consensus 197 ~~vd~vld~~g--~----~~~~~~~~~~l~~~g~~~~~g~~ 231 (312)
T cd08269 197 AGADVVIEAVG--H----QWPLDLAGELVAERGRLVIFGYH 231 (312)
T ss_pred CCCCEEEECCC--C----HHHHHHHHHHhccCCEEEEEccC
Confidence 45898876421 1 23577788999999999998743
No 392
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=67.00 E-value=6.7 Score=39.92 Aligned_cols=33 Identities=27% Similarity=0.293 Sum_probs=26.9
Q ss_pred CCCeEEEecCC-CCh-hHHHHHHcCC-eEEEEeCCH
Q 015966 189 SPPACLVPGAG-LGR-LALEISHLGF-ISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCG-lGR-La~eLA~~Gf-~V~GnD~S~ 221 (397)
...+||+.||| +|. ++..||+.|. .++-+|...
T Consensus 23 ~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (339)
T PRK07688 23 REKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDY 58 (339)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCc
Confidence 45689999999 565 4788899999 789999864
No 393
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=66.63 E-value=15 Score=39.53 Aligned_cols=62 Identities=18% Similarity=-0.018 Sum_probs=40.1
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhh
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~fiL 231 (397)
.|.+++..+++.=-.........+++.|.|+|.-.+.+..+ -..+.-+|-|-.|+..+.-.+
T Consensus 181 gYa~v~~~~~e~~~~~p~f~pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~l 246 (491)
T KOG2539|consen 181 GYALVTRSNKEINMRSPKFRPDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNL 246 (491)
T ss_pred chHHHHHHHHHHhhcCcccChHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhh
Confidence 67777766654322122235677889999988765554433 245788999999998665433
No 394
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=66.34 E-value=23 Score=35.33 Aligned_cols=38 Identities=24% Similarity=0.334 Sum_probs=29.8
Q ss_pred CCeEEEecCCC--ChhHHHHHHcCCeE--EEEeCCHHHHHHH
Q 015966 190 PPACLVPGAGL--GRLALEISHLGFIS--QGNEFSYYMMICS 227 (397)
Q Consensus 190 ~~rVLvPGCGl--GRLa~eLA~~Gf~V--~GnD~S~~ML~~s 227 (397)
..+|++.|.|+ |-++..|.++|+.| .|.|-+..-+..+
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a 44 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAA 44 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHH
Confidence 45899999886 56688999999976 7888888666544
No 395
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=66.17 E-value=74 Score=30.60 Aligned_cols=163 Identities=13% Similarity=0.153 Sum_probs=75.7
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc------CCeEEEEeCCHHHHHHHHhhhhcccccCccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL------GFISQGNEFSYYMMICSSFILNHTETAGEWNIY 243 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~------Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~Iy 243 (397)
.|+.++-++ ++..|++.|.=-|.=+..+|.. .-.|.|+|+...-. |. ..+.-|
T Consensus 23 ~~qeli~~~----------kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~-------~~----~a~e~h 81 (206)
T PF04989_consen 23 AYQELIWEL----------KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPH-------NR----KAIESH 81 (206)
T ss_dssp HHHHHHHHH------------SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT---------S-----GGGG-
T ss_pred HHHHHHHHh----------CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchh-------ch----HHHhhc
Confidence 455566555 3568999999998877766643 25799999854221 10 001111
Q ss_pred cccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC---CCC--CCCccEEEEeeccCCh---hhHHH
Q 015966 244 PWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQ--VGAWDAVVTCFFIDTA---HNIVE 315 (397)
Q Consensus 244 Pfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~---~~~--~~~fD~VvT~FFIDta---~Ni~~ 315 (397)
| +..++.|++||-.+.... ... ...-..| .+|.. .++..
T Consensus 82 p-----------------------------~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~vlV----ilDs~H~~~hvl~ 128 (206)
T PF04989_consen 82 P-----------------------------MSPRITFIQGDSIDPEIVDQVRELASPPHPVLV----ILDSSHTHEHVLA 128 (206)
T ss_dssp --------------------------------TTEEEEES-SSSTHHHHTSGSS----SSEEE----EESS----SSHHH
T ss_pred c-----------------------------ccCceEEEECCCCCHHHHHHHHHhhccCCceEE----EECCCccHHHHHH
Confidence 1 224588999986643110 000 1122222 24544 67999
Q ss_pred HHHHHHHhccCCcEEEEecCCcchhhhccCCCCCcccc---CCHHHHHHHHHhCC-CEEEEEeecCCCCCCCccccc
Q 015966 316 YIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIE---LSLEDVKRVALHYG-FEFEKEKTIETTYTTNPRSMM 388 (397)
Q Consensus 316 yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ie---LS~EEl~~ll~~~G-Feii~e~~i~~~Y~~d~~sm~ 388 (397)
-|+.-..+|+||+++|-.--...++.... .+...+. -..+.+++.+.+.. |++.+.-...-.-+.+|.+.+
T Consensus 129 eL~~y~plv~~G~Y~IVeDt~~~~~~~~~--~~~~~w~~g~~p~~av~~fL~~~~~f~iD~~~~~~~~~T~~p~g~L 203 (206)
T PF04989_consen 129 ELEAYAPLVSPGSYLIVEDTIIEDWPESW--FPDRPWGPGNNPKTAVKEFLAEHPDFEIDTYYEDKFGITVAPNGFL 203 (206)
T ss_dssp HHHHHHHT--TT-EEEETSHHHHHHHHS---------------HHHHHHHHHTTTTEEEETTTTTS---TTTTTTEE
T ss_pred HHHHhCccCCCCCEEEEEecccccccccc--ccccchhhhhHHHHHHHHHHHHCCCcEeccccccccceEECCCeEE
Confidence 99999999999999994222222222210 0001122 25778888887544 766652211112344555544
No 396
>PLN02985 squalene monooxygenase
Probab=66.09 E-value=6.5 Score=42.11 Aligned_cols=68 Identities=18% Similarity=0.222 Sum_probs=43.7
Q ss_pred HHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 149 RCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 149 ~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
-+||.-|+--|.--.-..|+..-...++...+ ........|+++|+|.+.+ |..|++.|++|+-+|-+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~ 75 (514)
T PLN02985 6 LWTLLAFVLTWTVFYVTNRKKKATELADAVAE----ERKDGATDVIIVGAGVGGSALAYALAKDGRRVHVIERD 75 (514)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhcchhhhhcc----cCcCCCceEEEECCCHHHHHHHHHHHHcCCeEEEEECc
Confidence 36788888888754333343222222222222 1123566899999999887 56789999999999864
No 397
>PLN02827 Alcohol dehydrogenase-like
Probab=65.74 E-value=22 Score=36.04 Aligned_cols=39 Identities=15% Similarity=0.125 Sum_probs=28.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s 227 (397)
++.+||+.|+| .|.++..+|+. |. .|.+++.+..-+..+
T Consensus 193 ~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a 234 (378)
T PLN02827 193 KGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKA 234 (378)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHH
Confidence 67899999874 46666777764 88 488999888766543
No 398
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=65.06 E-value=7.1 Score=45.44 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=28.8
Q ss_pred CCCCeEEEecCCCChh--HHHHHHcCCeEEEEeC
Q 015966 188 ESPPACLVPGAGLGRL--ALEISHLGFISQGNEF 219 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~ 219 (397)
..+.+|+++|.|-+.| |+.|+++|++|+..|-
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEcc
Confidence 3678999999999887 8899999999999994
No 399
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=64.31 E-value=1.5e+02 Score=29.07 Aligned_cols=124 Identities=14% Similarity=0.051 Sum_probs=76.0
Q ss_pred CCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+.+|.|.||-=|+|+.+|.+.+- .+.+.|++.--+..|.-.....
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~--------------------------------- 63 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKN--------------------------------- 63 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhc---------------------------------
Confidence 44699999999999999999986 4788999998887654221110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~ 347 (397)
...+.++...||-+.... ....+|+||-+=. -+.-|.+.|+.-.+-|+-==.+|- .
T Consensus 64 -----~l~~~i~vr~~dgl~~l~---~~d~~d~ivIAGM--GG~lI~~ILee~~~~l~~~~rlIL--------------Q 119 (226)
T COG2384 64 -----NLSERIDVRLGDGLAVLE---LEDEIDVIVIAGM--GGTLIREILEEGKEKLKGVERLIL--------------Q 119 (226)
T ss_pred -----CCcceEEEeccCCccccC---ccCCcCEEEEeCC--cHHHHHHHHHHhhhhhcCcceEEE--------------C
Confidence 112235666677554433 2347898876522 111123333333333332112221 1
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 348 DEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 348 ~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
| .-..++|++.+.+.+|+|..|.
T Consensus 120 P----n~~~~~LR~~L~~~~~~I~~E~ 142 (226)
T COG2384 120 P----NIHTYELREWLSANSYEIKAET 142 (226)
T ss_pred C----CCCHHHHHHHHHhCCceeeeee
Confidence 1 2357899999999999999876
No 400
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=64.19 E-value=29 Score=33.54 Aligned_cols=38 Identities=24% Similarity=0.206 Sum_probs=30.7
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMIC 226 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~ 226 (397)
++.+||+.|+ ++|.++..+|+. |..|...+-+...+..
T Consensus 162 ~~~~vlI~g~~g~~g~~~~~la~~~g~~vi~~~~~~~~~~~ 202 (334)
T PRK13771 162 KGETVLVTGAGGGVGIHAIQVAKALGAKVIAVTSSESKAKI 202 (334)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 5678999888 589998888876 8999888888776643
No 401
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=63.54 E-value=8.9 Score=40.04 Aligned_cols=32 Identities=28% Similarity=0.205 Sum_probs=28.2
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
.+.+|+++|+|.+.| |..|+++|++|+-+|-+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~ 165 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEAL 165 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 567999999998877 78899999999999865
No 402
>PRK06475 salicylate hydroxylase; Provisional
Probab=63.43 E-value=6.6 Score=39.82 Aligned_cols=30 Identities=33% Similarity=0.424 Sum_probs=25.5
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
.+|+++|+|.+.| |..|+++|++|+-+|-.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~ 34 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKA 34 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecC
Confidence 5899999999997 56668889999988844
No 403
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=63.36 E-value=25 Score=35.13 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=27.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHc-CC--eEEEEeCCH
Q 015966 188 ESPPACLVPGAGLGRLALEISHL-GF--ISQGNEFSY 221 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~-Gf--~V~GnD~S~ 221 (397)
.++.+||-+|++.|+-+--++.. |- -|+++|||.
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~ 191 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSH 191 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecc
Confidence 37889999999999987777665 43 488999986
No 404
>PRK07236 hypothetical protein; Provisional
Probab=63.31 E-value=7.2 Score=39.32 Aligned_cols=33 Identities=36% Similarity=0.373 Sum_probs=28.2
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
...+|+++|+|.+.| |..|++.|++|+-+|-+.
T Consensus 5 ~~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 39 (386)
T PRK07236 5 SGPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSP 39 (386)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 457899999999987 678899999999999654
No 405
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=63.01 E-value=58 Score=30.59 Aligned_cols=37 Identities=19% Similarity=0.214 Sum_probs=28.3
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+-|+ |+|+.+..+|+. |++|....-+.....
T Consensus 139 ~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~ 178 (325)
T TIGR02824 139 AGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGSDEKCA 178 (325)
T ss_pred CCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 5678999884 788887777654 999988887776653
No 406
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=62.87 E-value=5.2 Score=41.86 Aligned_cols=28 Identities=32% Similarity=0.443 Sum_probs=24.3
Q ss_pred EEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 193 CLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 193 VLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
|+|+|+|.|.| |..||+.|++|+-+|-.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~ 30 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQR 30 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECC
Confidence 68999999999 67789999999988843
No 407
>PLN03139 formate dehydrogenase; Provisional
Probab=62.87 E-value=28 Score=36.30 Aligned_cols=31 Identities=10% Similarity=-0.076 Sum_probs=22.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCH
Q 015966 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~ 221 (397)
.+.+|.++| +||++..+|++ |.+|.+.|-+.
T Consensus 198 ~gktVGIVG--~G~IG~~vA~~L~afG~~V~~~d~~~ 232 (386)
T PLN03139 198 EGKTVGTVG--AGRIGRLLLQRLKPFNCNLLYHDRLK 232 (386)
T ss_pred CCCEEEEEe--ecHHHHHHHHHHHHCCCEEEEECCCC
Confidence 577899998 56666666554 78888887653
No 408
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=62.81 E-value=28 Score=34.02 Aligned_cols=39 Identities=23% Similarity=0.217 Sum_probs=28.2
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s 227 (397)
.+.+||+.|+| +|..+..+|+. |..|.+.+-+..-+..+
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~ 203 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLA 203 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Confidence 56799999863 45566666665 99999998887665433
No 409
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=62.64 E-value=14 Score=38.63 Aligned_cols=35 Identities=26% Similarity=0.105 Sum_probs=27.8
Q ss_pred CeEEEecCCC-Chh-HHHHHHcC-CeEEEEeCCHHHHH
Q 015966 191 PACLVPGAGL-GRL-ALEISHLG-FISQGNEFSYYMMI 225 (397)
Q Consensus 191 ~rVLvPGCGl-GRL-a~eLA~~G-f~V~GnD~S~~ML~ 225 (397)
.+||++|||. |+- ++.||++| ++|+..|-|..-+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~ 39 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCA 39 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHH
Confidence 4799999963 554 56679999 99999999986653
No 410
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=62.58 E-value=26 Score=33.77 Aligned_cols=37 Identities=19% Similarity=0.107 Sum_probs=29.0
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+.| .++|.++..+|+. |.+|.+++-+..-+.
T Consensus 140 ~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~~~~~~~ 179 (327)
T PRK10754 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGSAQKAQ 179 (327)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 567899875 4688888888876 999999988876653
No 411
>PF08729 HUN: HPC2 and ubinuclein domain; InterPro: IPR014840 HPC2 is required for cell-cycle regulation of histone transcription []. It regulates transcription of the histone genes during the S-phase of the cell cycle by repressing transcription at other cell cycle stages. HPC2 mutants display synthetic interactions with FACT complex, which allows RNA Pol II to elongate through nucleosomes [].
Probab=62.54 E-value=7.2 Score=29.63 Aligned_cols=31 Identities=35% Similarity=0.572 Sum_probs=23.3
Q ss_pred ccCChhhHHHHHHHHHHhccCCcEEEEecCCc
Q 015966 306 FIDTAHNIVEYIEIISRILKDGGVWINLGPLL 337 (397)
Q Consensus 306 FIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLl 337 (397)
|||..+.+.+++. ...-.+.||-+||.|||-
T Consensus 24 FIDDsE~~de~~~-~~~~~~~~GFfv~~G~le 54 (55)
T PF08729_consen 24 FIDDSEAYDEYVP-DNVTTKHGGFFVNSGELE 54 (55)
T ss_pred CcCCHHHHhhhhh-hhhhhhcCCceEeccccc
Confidence 7888774445554 456678999999999984
No 412
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=62.41 E-value=31 Score=33.59 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=29.0
Q ss_pred CCCeEEEecCC--CChhHHHHHHc-CCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAG--LGRLALEISHL-GFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCG--lGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (397)
++.+||+.|+| +|.++..+|+. |.+|....-+..-.
T Consensus 165 ~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~ 203 (341)
T cd08297 165 PGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVGDEKL 203 (341)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 57799998875 89998888876 89998888876554
No 413
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=62.35 E-value=15 Score=39.20 Aligned_cols=80 Identities=16% Similarity=0.232 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhcccccChhHHhhch--HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----C--CeEEEE
Q 015966 146 DKVRCIIRNIVRDWAAEGKTERDQCY--KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----G--FISQGN 217 (397)
Q Consensus 146 dkv~stL~q~~RDWS~eG~~ER~~~y--~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~----G--f~V~Gn 217 (397)
|.+-.+-..+.|.|+.+...+=-+-| ..+.+.+.+.+... +..+|+||.||+|++-...++. . -..+|.
T Consensus 144 d~~G~~yE~ll~~fa~~~~k~~GEfyTP~~v~~liv~~l~~~---~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGq 220 (489)
T COG0286 144 DLFGDAYEYLLRKFAEAEGKEAGEFYTPREVSELIVELLDPE---PRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQ 220 (489)
T ss_pred cchhHHHHHHHHHHHHhcCCCCCccCChHHHHHHHHHHcCCC---CCCeecCCCCchhHHHHHHHHHHHhhccceeEEEE
Confidence 34444445555556554333312222 23555555555432 4459999999999884443332 1 347899
Q ss_pred eCCHHHHHHHH
Q 015966 218 EFSYYMMICSS 228 (397)
Q Consensus 218 D~S~~ML~~s~ 228 (397)
|+...++..++
T Consensus 221 E~~~~t~~l~~ 231 (489)
T COG0286 221 EINDTTYRLAK 231 (489)
T ss_pred eCCHHHHHHHH
Confidence 99888877655
No 414
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=62.24 E-value=7.1 Score=41.97 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=25.6
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEe
Q 015966 191 PACLVPGAGLGRL--ALEISHLGFISQGNE 218 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD 218 (397)
.||.+.|+|+..| |.+||++||+|+-.|
T Consensus 1 ~rVai~GaG~AgL~~a~~La~~g~~vt~~e 30 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELADAGYDVTLYE 30 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCceEEEe
Confidence 4899999999999 789999999999776
No 415
>PRK08324 short chain dehydrogenase; Validated
Probab=62.13 E-value=39 Score=37.34 Aligned_cols=37 Identities=22% Similarity=0.237 Sum_probs=28.5
Q ss_pred CCCeEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGA--GLGR-LALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGC--GlGR-La~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
.+.+||+.|+ |.|+ ++..|+++|+.|..++.+..-+.
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~ 460 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAE 460 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHH
Confidence 4678999996 5555 36677888999999999876543
No 416
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=61.33 E-value=27 Score=33.63 Aligned_cols=37 Identities=30% Similarity=0.315 Sum_probs=29.1
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+.|+ ++|..+..+|++ |.+|.+..-+.....
T Consensus 139 ~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~~~~~~~ 178 (329)
T cd08250 139 SGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCSSDEKAE 178 (329)
T ss_pred CCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeCcHHHHH
Confidence 6778999884 789898888776 889988887766543
No 417
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=61.25 E-value=7.6 Score=39.31 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=23.8
Q ss_pred eEEEecCCC-Chh-HHHHHHcCCeEEEEeC
Q 015966 192 ACLVPGAGL-GRL-ALEISHLGFISQGNEF 219 (397)
Q Consensus 192 rVLvPGCGl-GRL-a~eLA~~Gf~V~GnD~ 219 (397)
+|+++|+|. |.. |++||++|.+|+-+|=
T Consensus 3 ~vvIIGaG~~G~~~A~~La~~g~~V~vle~ 32 (410)
T PRK12409 3 HIAVIGAGITGVTTAYALAQRGYQVTVFDR 32 (410)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 799999994 444 7899999999998884
No 418
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=61.17 E-value=21 Score=34.20 Aligned_cols=36 Identities=11% Similarity=-0.013 Sum_probs=27.2
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (397)
++.+||+.|+ ++|..+..+|+. |..+....-+....
T Consensus 139 ~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~~~~ 177 (324)
T cd08292 139 PGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRDAGV 177 (324)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCHHHH
Confidence 5779999875 489998888876 88887776555443
No 419
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=61.05 E-value=7 Score=38.61 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=25.5
Q ss_pred EEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 193 CLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 193 VLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
|+++|+|.+.+ |+.|+++|++|+.+|-+.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er~~ 32 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEATP 32 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeCCC
Confidence 89999999988 777899999999888764
No 420
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.02 E-value=23 Score=36.54 Aligned_cols=42 Identities=17% Similarity=0.011 Sum_probs=33.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHc--CC-eEEEEeCCHHHHHHHHh
Q 015966 188 ESPPACLVPGAGLGRLALEISHL--GF-ISQGNEFSYYMMICSSF 229 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~--Gf-~V~GnD~S~~ML~~s~f 229 (397)
..+.+||+.|||.=.|.--|+.+ |. +|...|++..-|..|+.
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 46889999999976665555555 43 79999999999988874
No 421
>PRK08163 salicylate hydroxylase; Provisional
Probab=60.80 E-value=8.7 Score=38.51 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=27.1
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 190 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 190 ~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
+.+|+++|+|.+.| |..|++.|++|+-+|-+.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~ 37 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQAA 37 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCc
Confidence 46899999999988 667788899999998654
No 422
>PLN02688 pyrroline-5-carboxylate reductase
Probab=60.64 E-value=66 Score=30.69 Aligned_cols=33 Identities=6% Similarity=0.245 Sum_probs=24.4
Q ss_pred CccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 297 AWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 297 ~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.-|+|+.|. . ...+.+.++.+...+++|.++|.
T Consensus 61 ~aDvVil~v--~-~~~~~~vl~~l~~~~~~~~~iIs 93 (266)
T PLN02688 61 SSDVIILAV--K-PQVVKDVLTELRPLLSKDKLLVS 93 (266)
T ss_pred cCCEEEEEE--C-cHHHHHHHHHHHhhcCCCCEEEE
Confidence 358888776 3 44577788888778888888885
No 423
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=60.37 E-value=8.1 Score=37.05 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=26.4
Q ss_pred EEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 193 CLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 193 VLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
|+++|+|.-.+ |++|+++|++|+-+|-..
T Consensus 2 vvIIGaGi~G~~~A~~La~~G~~V~l~e~~~ 32 (358)
T PF01266_consen 2 VVIIGAGIAGLSTAYELARRGHSVTLLERGD 32 (358)
T ss_dssp EEEECTSHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEEEEeecc
Confidence 89999999877 899999999999999874
No 424
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=60.31 E-value=38 Score=30.18 Aligned_cols=100 Identities=21% Similarity=0.211 Sum_probs=57.8
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCC
Q 015966 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (397)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p 269 (397)
+|.++|+|.+.. |..||.+|++|+-...+...+.. ++.... + ...+|++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~----i~~~~~-n----------------------~~~~~~~~- 52 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEE----INETRQ-N----------------------PKYLPGIK- 52 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHH----HHHHTS-E----------------------TTTSTTSB-
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHH----HHHhCC-C----------------------CCCCCCcc-
Confidence 588999999876 67889999999999988755432 111110 0 11122211
Q ss_pred CCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 270 ~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
.+.++.+ .-|+.+.. ..-|+|+-+ + .+.-+.++++.|...|+++=.+|++
T Consensus 53 ----l~~~i~~-t~dl~~a~------~~ad~Iiia--v-Ps~~~~~~~~~l~~~l~~~~~ii~~ 102 (157)
T PF01210_consen 53 ----LPENIKA-TTDLEEAL------EDADIIIIA--V-PSQAHREVLEQLAPYLKKGQIIISA 102 (157)
T ss_dssp ----EETTEEE-ESSHHHHH------TT-SEEEE---S--GGGHHHHHHHHTTTSHTT-EEEET
T ss_pred ----cCccccc-ccCHHHHh------CcccEEEec--c-cHHHHHHHHHHHhhccCCCCEEEEe
Confidence 1112333 23554432 234666532 1 2233668999999999999898874
No 425
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=60.29 E-value=26 Score=33.46 Aligned_cols=36 Identities=17% Similarity=0.234 Sum_probs=27.5
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (397)
++.+||+.|+ +.|.++..+|+. |..+.+..-+..-+
T Consensus 138 ~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~~~~ 176 (323)
T cd05282 138 PGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRDEQV 176 (323)
T ss_pred CCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecChHHH
Confidence 5679999876 589998888876 88887776665443
No 426
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=60.17 E-value=8.6 Score=36.14 Aligned_cols=30 Identities=23% Similarity=0.162 Sum_probs=26.0
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
.||++|+|.+.+ |..|+++|.+|.-+|-..
T Consensus 2 dv~IiGaG~aGl~~A~~l~~~g~~v~vie~~~ 33 (295)
T TIGR02032 2 DVVVVGAGPAGASAAYRLADKGLRVLLLEKKS 33 (295)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEeccC
Confidence 489999999987 778899999999998654
No 427
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=60.13 E-value=8.5 Score=38.84 Aligned_cols=33 Identities=18% Similarity=0.090 Sum_probs=27.7
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
....|++.|+|.+.+ |..|++.|++|+-+|-..
T Consensus 17 ~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~ 51 (415)
T PRK07364 17 LTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQP 51 (415)
T ss_pred cccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCC
Confidence 456899999999988 667899999999998654
No 428
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=59.93 E-value=42 Score=33.41 Aligned_cols=36 Identities=22% Similarity=0.130 Sum_probs=25.4
Q ss_pred CCCeEEEecCCC-Chh-HHHHHHcCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAGL-GRL-ALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRL-a~eLA~~Gf~V~GnD~S~~ML 224 (397)
.+.+||++|.|. |+. +..|..+|..|+..|-+..-+
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~ 188 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHL 188 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 467999999864 332 333445699999999997543
No 429
>PHA01634 hypothetical protein
Probab=59.71 E-value=15 Score=33.46 Aligned_cols=40 Identities=18% Similarity=-0.032 Sum_probs=35.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~ 228 (397)
.+.+||++|++.|--|..++-+|. .|.++|-+..+.-..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~e 68 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWE 68 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHH
Confidence 678999999999999999999998 5999999998865443
No 430
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=59.21 E-value=8.6 Score=42.87 Aligned_cols=33 Identities=33% Similarity=0.406 Sum_probs=28.0
Q ss_pred CCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 188 ESPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
++..+||++|+|.|.| |..|+++|++|+-+|-.
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~ 113 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKD 113 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhcCCeEEEEecc
Confidence 3678999999999998 66778889999998853
No 431
>PRK09072 short chain dehydrogenase; Provisional
Probab=59.14 E-value=1.3e+02 Score=28.01 Aligned_cols=36 Identities=19% Similarity=0.140 Sum_probs=26.5
Q ss_pred CCCeEEEecCC--CCh-hHHHHHHcCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAG--LGR-LALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCG--lGR-La~eLA~~Gf~V~GnD~S~~ML 224 (397)
++.+||+.|++ +|+ ++..|+++|+.|.+++-+..-+
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~ 42 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKL 42 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHH
Confidence 35689999864 444 4667788899999999876543
No 432
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=58.92 E-value=32 Score=33.10 Aligned_cols=37 Identities=22% Similarity=0.137 Sum_probs=28.7
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+.|+ ++|..+..+|+. |.+|.+++-+..-..
T Consensus 145 ~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~~~~~~~ 184 (329)
T cd05288 145 PGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAGSDEKCR 184 (329)
T ss_pred CCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 5679999884 688888888776 899998887775543
No 433
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=58.76 E-value=21 Score=34.75 Aligned_cols=32 Identities=16% Similarity=0.124 Sum_probs=22.5
Q ss_pred CCCeEEEecCCCChh----HHHHHHcCCeEEEEeCCH
Q 015966 189 SPPACLVPGAGLGRL----ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL----a~eLA~~Gf~V~GnD~S~ 221 (397)
++.+||+.|+ +|.+ +..|+++|++|.+...+.
T Consensus 4 ~~k~vlVtG~-~G~IG~~l~~~L~~~G~~V~~~~r~~ 39 (325)
T PLN02989 4 GGKVVCVTGA-SGYIASWIVKLLLFRGYTINATVRDP 39 (325)
T ss_pred CCCEEEEECC-chHHHHHHHHHHHHCCCEEEEEEcCC
Confidence 4678999994 4543 555667799998776554
No 434
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=58.67 E-value=30 Score=32.37 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=27.9
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+.|+ |+|+.+..+++. |..|...+-+...+.
T Consensus 139 ~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~~~~~~~~~~~ 178 (323)
T cd05276 139 AGETVLIHGGASGVGTAAIQLAKALGARVIATAGSEEKLE 178 (323)
T ss_pred CCCEEEEEcCcChHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 5679999985 578887666554 999988887776654
No 435
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=58.61 E-value=8.2 Score=40.57 Aligned_cols=29 Identities=28% Similarity=0.288 Sum_probs=25.0
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
.|+|+|+|.|.| |..||++|++|+.+|-.
T Consensus 2 dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~ 32 (493)
T TIGR02730 2 DAIVIGSGIGGLVTATQLAVKGAKVLVLERY 32 (493)
T ss_pred cEEEECCcHHHHHHHHHHHHCCCcEEEEECC
Confidence 389999999999 56779999999988854
No 436
>PLN02702 L-idonate 5-dehydrogenase
Probab=58.57 E-value=23 Score=35.17 Aligned_cols=38 Identities=18% Similarity=0.163 Sum_probs=27.4
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMIC 226 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~~ 226 (397)
++.+||+.|+| +|..+..+|++ |.. +.+++-+..-+..
T Consensus 181 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~ 221 (364)
T PLN02702 181 PETNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDERLSV 221 (364)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 56789998775 67777777765 875 7888888766543
No 437
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=58.53 E-value=16 Score=33.57 Aligned_cols=37 Identities=22% Similarity=0.164 Sum_probs=29.1
Q ss_pred eEEEecCCC-C-hhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 192 ACLVPGAGL-G-RLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 192 rVLvPGCGl-G-RLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
+|-++|+|+ | .+|..+|..|++|.-.|.+...+..+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~ 39 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERAR 39 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhh
Confidence 588999986 3 568888999999999999999987554
No 438
>PRK06753 hypothetical protein; Provisional
Probab=58.47 E-value=9.4 Score=37.92 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=25.4
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
+||+.|+|.+.| |..|+++|++|+-+|-..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~ 33 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNE 33 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 799999999987 566899999999988543
No 439
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=58.38 E-value=79 Score=32.62 Aligned_cols=33 Identities=24% Similarity=0.242 Sum_probs=26.9
Q ss_pred eEEEecCCCC--hhHHHHHHcCCeEEEEeCCHHHH
Q 015966 192 ACLVPGAGLG--RLALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 192 rVLvPGCGlG--RLa~eLA~~Gf~V~GnD~S~~ML 224 (397)
+|-++|+|.= .+|..|++.|++|.|.|.+..-+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v 36 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKV 36 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHH
Confidence 6888999853 45788889999999999988654
No 440
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=58.24 E-value=35 Score=35.71 Aligned_cols=95 Identities=18% Similarity=0.165 Sum_probs=60.7
Q ss_pred CCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHH--hhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 190 PPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSS--FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~--fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
..+|||+=+|+|-=+..+|.. |. .|+.||+|+......+ ..+|..
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~------------------------------- 101 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG------------------------------- 101 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-------------------------------
Confidence 468999999999777777665 55 7999999998765433 222210
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
.+...+..|...+.. .....||+|= ||.--...-|++...+..|.||++-
T Consensus 102 ----------~~~~v~n~DAN~lm~--~~~~~fd~ID----iDPFGSPaPFlDaA~~s~~~~G~l~ 151 (380)
T COG1867 102 ----------EDAEVINKDANALLH--ELHRAFDVID----IDPFGSPAPFLDAALRSVRRGGLLC 151 (380)
T ss_pred ----------ccceeecchHHHHHH--hcCCCccEEe----cCCCCCCchHHHHHHHHhhcCCEEE
Confidence 011222344433322 1235677652 4544445678999999999999887
No 441
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=57.77 E-value=70 Score=30.86 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=24.3
Q ss_pred CCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015966 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GP 335 (397)
+.+|+|+.+ ... ...++.+.++|++||.++.+|.
T Consensus 224 ~~vD~vi~~---~~~---~~~~~~~~~~l~~~G~~v~~g~ 257 (329)
T cd08298 224 EPLDAAIIF---APV---GALVPAALRAVKKGGRVVLAGI 257 (329)
T ss_pred CcccEEEEc---CCc---HHHHHHHHHHhhcCCEEEEEcC
Confidence 347877542 111 2568899999999999998774
No 442
>PRK07538 hypothetical protein; Provisional
Probab=57.58 E-value=9.4 Score=38.91 Aligned_cols=30 Identities=30% Similarity=0.405 Sum_probs=25.4
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
+|+++|+|.+.| |..|+++|++|+-+|-+.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~ 33 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAP 33 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 699999999998 555788899999998553
No 443
>PLN02712 arogenate dehydrogenase
Probab=57.50 E-value=43 Score=37.34 Aligned_cols=34 Identities=24% Similarity=0.129 Sum_probs=26.6
Q ss_pred CCCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHH
Q 015966 189 SPPACLVPGAGL--GRLALEISHLGFISQGNEFSYY 222 (397)
Q Consensus 189 ~~~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ 222 (397)
.+.+|.++|+|. |.++..|.+.|++|.+.|-+..
T Consensus 368 ~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~ 403 (667)
T PLN02712 368 SKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDY 403 (667)
T ss_pred CCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChH
Confidence 567999999775 5566667778999999998853
No 444
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=57.46 E-value=34 Score=32.18 Aligned_cols=37 Identities=16% Similarity=0.139 Sum_probs=27.3
Q ss_pred CCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~ 225 (397)
++.+||+.|+ |+|+.+..+++ +|.++...+.+...+.
T Consensus 144 ~~~~vli~g~~~~~g~~~~~~~~~~g~~v~~~~~~~~~~~ 183 (328)
T cd08268 144 PGDSVLITAASSSVGLAAIQIANAAGATVIATTRTSEKRD 183 (328)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 5678999986 67777666655 4899988888875543
No 445
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=57.45 E-value=23 Score=34.78 Aligned_cols=37 Identities=14% Similarity=0.013 Sum_probs=25.5
Q ss_pred CCCeEEEecC-CCChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015966 189 SPPACLVPGA-GLGRLALEISHL-GFI-SQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGC-GlGRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (397)
++.+||+.|+ |+|..+..+|+. |.. +.+++-+..-+.
T Consensus 174 ~g~~vlI~g~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~ 213 (350)
T cd08256 174 FDDVVVLAGAGPLGLGMIGAARLKNPKKLIVLDLKDERLA 213 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCHHHHH
Confidence 5678888766 466677777766 754 678887765543
No 446
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=57.42 E-value=9.7 Score=29.51 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=22.3
Q ss_pred EecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 195 VPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 195 vPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
++|+|.+.| |+.|++.|++|+-.|-+.
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~ 29 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKND 29 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSS
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCc
Confidence 579999888 788999999999888665
No 447
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.36 E-value=16 Score=33.63 Aligned_cols=36 Identities=19% Similarity=0.209 Sum_probs=28.1
Q ss_pred CCCeEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGA--GLGR-LALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGC--GlGR-La~eLA~~Gf~V~GnD~S~~ML 224 (397)
++.+||+.|+ |+|+ ++..|+++|++|.+.+-+..-+
T Consensus 4 ~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~ 42 (251)
T PRK07231 4 EGKVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAA 42 (251)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 3468999997 5666 5777888899999999987543
No 448
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=56.50 E-value=62 Score=32.78 Aligned_cols=40 Identities=15% Similarity=0.108 Sum_probs=30.6
Q ss_pred CCCeEEEe--cCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVP--GAGLGRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvP--GCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
++..||+- .-|.|-+...|++. |..+.+.=-+.+-..++.
T Consensus 146 pGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~ak 188 (336)
T KOG1197|consen 146 PGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAK 188 (336)
T ss_pred CCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHH
Confidence 77889876 55889998888775 888888877776665554
No 449
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=56.40 E-value=36 Score=34.46 Aligned_cols=44 Identities=9% Similarity=0.019 Sum_probs=28.8
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHHhhhh
Q 015966 189 SPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILN 232 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S~~ML~~s~fiLn 232 (397)
...++||+|+|..-+=-.|+. .|+...|.|+...-|..|+-+.+
T Consensus 102 ~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~ 147 (299)
T PF05971_consen 102 EKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVE 147 (299)
T ss_dssp ---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHH
T ss_pred cceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHH
Confidence 368999999999866333332 39999999999999998886653
No 450
>PRK07588 hypothetical protein; Provisional
Probab=55.86 E-value=11 Score=38.05 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=25.2
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
+|+++|+|.+.+ |..|++.|+.|+-+|-.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~ 32 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERA 32 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCC
Confidence 699999999977 67789999999999843
No 451
>PLN02780 ketoreductase/ oxidoreductase
Probab=55.69 E-value=1e+02 Score=30.55 Aligned_cols=36 Identities=17% Similarity=0.076 Sum_probs=28.8
Q ss_pred CCCeEEEecCCCC---hhHHHHHHcCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAGLG---RLALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCGlG---RLa~eLA~~Gf~V~GnD~S~~ML 224 (397)
.+..||+-|++-| .+|.+||++|++|..++-+..-+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l 90 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKL 90 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHH
Confidence 3578999997554 36888999999999998887655
No 452
>PRK09126 hypothetical protein; Provisional
Probab=55.67 E-value=10 Score=38.00 Aligned_cols=30 Identities=27% Similarity=0.212 Sum_probs=25.8
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
..|++.|+|.+.+ |..|+++|++|+-+|-.
T Consensus 4 ~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~ 35 (392)
T PRK09126 4 SDIVVVGAGPAGLSFARSLAGSGLKVTLIERQ 35 (392)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEeCC
Confidence 4699999999998 56688899999999864
No 453
>PRK07045 putative monooxygenase; Reviewed
Probab=55.39 E-value=11 Score=37.86 Aligned_cols=33 Identities=21% Similarity=0.268 Sum_probs=27.3
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
+..+|+++|+|.+.| |..|+++|++|+-+|-..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~ 38 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAA 38 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCC
Confidence 346899999999988 667788899999998444
No 454
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=55.33 E-value=11 Score=38.28 Aligned_cols=31 Identities=19% Similarity=0.093 Sum_probs=26.5
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
..|+++|+|.+.+ |..|+++|++|+-+|-..
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILERQS 35 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEECCC
Confidence 4799999999998 566799999999998655
No 455
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=55.30 E-value=35 Score=34.04 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=27.2
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~~s 227 (397)
++.+||+.|+| +|.++..+|+. |+. |.+.+-+..-+..+
T Consensus 183 ~g~~vlI~g~g~vG~~a~~~a~~~G~~~v~~~~~~~~~~~~~ 224 (365)
T cd05279 183 PGSTCAVFGLGGVGLSVIMGCKAAGASRIIAVDINKDKFEKA 224 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHH
Confidence 56789998763 56666777765 885 78888777665433
No 456
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=55.29 E-value=42 Score=35.62 Aligned_cols=35 Identities=23% Similarity=0.192 Sum_probs=27.3
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCHHHHH
Q 015966 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
.+|=+.|=|-=.| |..+|++||+|.|+|+...-+-
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd 46 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVD 46 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHH
Confidence 6777776554443 7778899999999999997764
No 457
>KOG2614 consensus Kynurenine 3-monooxygenase and related flavoprotein monooxygenases [Energy production and conversion; General function prediction only]
Probab=54.70 E-value=12 Score=39.57 Aligned_cols=33 Identities=24% Similarity=0.240 Sum_probs=27.6
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCHH
Q 015966 190 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSYY 222 (397)
Q Consensus 190 ~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~~ 222 (397)
..+|++.|.|+|.| |..|+++|++|...|.+..
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~ 36 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESRED 36 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 45899999999999 5666888999999997653
No 458
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=54.55 E-value=75 Score=30.27 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=28.1
Q ss_pred CCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 190 PPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 190 ~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
+.+||+.|+ ++|.++..+|+. |..|...+-|..-+.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~ 185 (325)
T cd05280 147 DGPVLVTGATGGVGSIAVAILAKLGYTVVALTGKEEQAD 185 (325)
T ss_pred CCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 358999885 688888888776 888988888876553
No 459
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=54.55 E-value=1.3e+02 Score=29.88 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=28.4
Q ss_pred CeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 015966 191 PACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 191 ~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML 224 (397)
.+|+++|+|- |.+|..|++.|.+|+.++-+..-+
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~ 38 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRL 38 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHH
Confidence 5899999995 567999999999999999875433
No 460
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=54.55 E-value=82 Score=33.71 Aligned_cols=34 Identities=24% Similarity=0.190 Sum_probs=28.5
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
+|-++|.|. +.+|.-|+++||.|.+.|.+.....
T Consensus 3 ~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~ 38 (470)
T PTZ00142 3 DIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTE 38 (470)
T ss_pred EEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHH
Confidence 578888885 4578889999999999999998753
No 461
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=54.40 E-value=19 Score=34.93 Aligned_cols=32 Identities=22% Similarity=0.175 Sum_probs=27.2
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 190 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 190 ~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
...||++|+|...+ |+.||+.|++|.-+|-..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~ 58 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKL 58 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCC
Confidence 34699999999998 778899999999998543
No 462
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=54.19 E-value=13 Score=32.36 Aligned_cols=29 Identities=31% Similarity=0.508 Sum_probs=22.3
Q ss_pred eEEEecCC-CCh-hHHHHHHcCC-eEEEEeCC
Q 015966 192 ACLVPGAG-LGR-LALEISHLGF-ISQGNEFS 220 (397)
Q Consensus 192 rVLvPGCG-lGR-La~eLA~~Gf-~V~GnD~S 220 (397)
+||+.||| +|. ++..|++.|. .++-+|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999998 565 4777888898 57777754
No 463
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=53.65 E-value=17 Score=39.18 Aligned_cols=32 Identities=22% Similarity=0.242 Sum_probs=27.0
Q ss_pred CCCCeEEEecCCCChh--HHHHHHcCCeEEEEeC
Q 015966 188 ESPPACLVPGAGLGRL--ALEISHLGFISQGNEF 219 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~ 219 (397)
..+.+|+++|+|...| |..|+++|++|+.+|-
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~ 168 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEA 168 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 3678999999998877 5667888999999984
No 464
>PLN02487 zeta-carotene desaturase
Probab=53.58 E-value=15 Score=40.12 Aligned_cols=61 Identities=25% Similarity=0.287 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCC---CCCCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 147 KVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNR---SKESPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 147 kv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~---~~~~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
.+...||.++-|...+-. + ..+|.. ...++.+|+++|.|.+.| |+.|+++|++|+-+|-..
T Consensus 43 ~~~~~l~r~~~d~~~~~~-~-------------~~~~~~~~~~~g~~~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~ 108 (569)
T PLN02487 43 SVSSSLDSNVSDMSVNAP-K-------------GLFPPEPEAYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRP 108 (569)
T ss_pred hhhHHHHHHhhhhhcccc-c-------------cccCCCCcccCCCCCeEEEECCCHHHHHHHHHHHhCCCeeEEEecCC
Confidence 456688888888775421 0 111111 112345999999999988 678899999999888543
No 465
>PRK05868 hypothetical protein; Validated
Probab=53.55 E-value=12 Score=37.89 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=25.0
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
.+|++.|+|.+.+ |..|+++|+.|+-+|-+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~ 33 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERH 33 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCC
Confidence 3799999999987 56678899999988844
No 466
>PRK06847 hypothetical protein; Provisional
Probab=53.44 E-value=14 Score=36.62 Aligned_cols=32 Identities=25% Similarity=0.396 Sum_probs=26.9
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 190 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 190 ~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
..+|+++|+|.+.| |..|++.|++|+-+|-+.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~~~ 37 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEIDP 37 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 46899999999998 666788899999998553
No 467
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=53.38 E-value=29 Score=32.16 Aligned_cols=34 Identities=21% Similarity=0.155 Sum_probs=23.1
Q ss_pred eEEEecCCCCh--hHHHHHHcCCeEEEEeCCHHHHH
Q 015966 192 ACLVPGAGLGR--LALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 192 rVLvPGCGlGR--La~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
+|-|.|.|.=. +|..||+.|++|.|+|....-+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~ 37 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVE 37 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHH
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHH
Confidence 67777666543 36778899999999999998654
No 468
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=53.17 E-value=12 Score=38.05 Aligned_cols=31 Identities=19% Similarity=0.176 Sum_probs=24.2
Q ss_pred CeEEEecCCCChh--HHHHHHcC-CeEEEEeCCH
Q 015966 191 PACLVPGAGLGRL--ALEISHLG-FISQGNEFSY 221 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~G-f~V~GnD~S~ 221 (397)
.+|+++|+|.|.| |..|+++| ++|+-+|-+.
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~ 34 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCKHSHLNVQLFEAAP 34 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEecCC
Confidence 3799999999987 55667778 5898888543
No 469
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=53.09 E-value=56 Score=31.15 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=29.4
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+-|+ ++|.++..+|+. |..|.+.+-+.....
T Consensus 142 ~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~~~~~~ 181 (324)
T cd08244 142 PGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGGPAKTA 181 (324)
T ss_pred CCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 5678999884 788888888776 999999887776653
No 470
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=52.80 E-value=96 Score=29.73 Aligned_cols=35 Identities=29% Similarity=0.329 Sum_probs=26.0
Q ss_pred CCC-eEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHH
Q 015966 189 SPP-ACLVPGA--GLGRLALEISHL-GFISQGNEFSYYM 223 (397)
Q Consensus 189 ~~~-rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~M 223 (397)
++. +||+.|+ ++|.++..+|+. |..+....-+..-
T Consensus 144 ~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~~~~ 182 (323)
T TIGR02823 144 PEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGKAEE 182 (323)
T ss_pred CCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCCHHH
Confidence 456 8999986 678888888765 8888777655544
No 471
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=52.61 E-value=54 Score=31.78 Aligned_cols=36 Identities=22% Similarity=0.249 Sum_probs=25.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-C-CeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-G-FISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-G-f~V~GnD~S~~ML 224 (397)
++.+||+.|+| +|.++..+|++ | ..|.+.+-|..-+
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~ 205 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEAL 205 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHH
Confidence 56789988754 56666667765 7 8898888776554
No 472
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=52.48 E-value=18 Score=34.72 Aligned_cols=42 Identities=29% Similarity=0.215 Sum_probs=30.0
Q ss_pred CCeEEEecCCCChhHHHHHHc--C--------CeEEEEeCCHHHHHHHHhhh
Q 015966 190 PPACLVPGAGLGRLALEISHL--G--------FISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--G--------f~V~GnD~S~~ML~~s~fiL 231 (397)
..+|++.|+|.|+|+..+.+. - ....-+|.|+.|-..-+-.|
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L 70 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERL 70 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHh
Confidence 479999999999999998664 2 26789999998875444333
No 473
>PRK06849 hypothetical protein; Provisional
Probab=52.34 E-value=20 Score=36.46 Aligned_cols=36 Identities=19% Similarity=0.169 Sum_probs=30.5
Q ss_pred CCCeEEEecCCCC---hhHHHHHHcCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAGLG---RLALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCGlG---RLa~eLA~~Gf~V~GnD~S~~ML 224 (397)
.+.+||+.|+|.+ .++..|.+.|+.|.++|....-+
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~~ 41 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYPL 41 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchHH
Confidence 4679999999997 57899999999999999886443
No 474
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=52.23 E-value=16 Score=38.14 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=26.8
Q ss_pred CCCeEEEecCC-CChh--HHHHHHcCCeEEEEeCCH
Q 015966 189 SPPACLVPGAG-LGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
+..+|+++|-| +|.- |..|+++|+.|+|.|...
T Consensus 6 ~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~ 41 (461)
T PRK00421 6 RIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKE 41 (461)
T ss_pred CCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCC
Confidence 55689999876 6654 678999999999999754
No 475
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=51.91 E-value=14 Score=37.45 Aligned_cols=31 Identities=23% Similarity=0.089 Sum_probs=26.5
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
.+|+++|+|.+.| |..|++.|++|+-+|-..
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~ 35 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRS 35 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCC
Confidence 4799999999988 566799999999999664
No 476
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=51.86 E-value=16 Score=34.69 Aligned_cols=33 Identities=27% Similarity=0.199 Sum_probs=24.7
Q ss_pred CCCeEEEecCC-CChh-HHHHHHcCC-eEEEEeCCH
Q 015966 189 SPPACLVPGAG-LGRL-ALEISHLGF-ISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRL-a~eLA~~Gf-~V~GnD~S~ 221 (397)
.+.+||++||| +|.. +..||+.|. .++-+|...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 35689999998 5554 778899998 567777654
No 477
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=51.80 E-value=49 Score=32.11 Aligned_cols=35 Identities=17% Similarity=0.315 Sum_probs=24.9
Q ss_pred CCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC
Q 015966 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (397)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL 336 (397)
+.+|+|+.+. .+ ...+....++|+++|.||.+|..
T Consensus 234 ~~~dvvid~~-----~~-~~~~~~~~~~l~~~g~~v~~g~~ 268 (344)
T cd08284 234 RGADVVLEAV-----GG-AAALDLAFDLVRPGGVISSVGVH 268 (344)
T ss_pred CCCCEEEECC-----CC-HHHHHHHHHhcccCCEEEEECcC
Confidence 4589886532 11 14577888899999999988743
No 478
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=51.78 E-value=12 Score=37.63 Aligned_cols=30 Identities=23% Similarity=0.077 Sum_probs=25.6
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
..|++.|+|.+.+ |..|+++|++|+-+|-.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcCC
Confidence 4699999999988 55678899999999954
No 479
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=51.68 E-value=13 Score=37.69 Aligned_cols=30 Identities=23% Similarity=0.136 Sum_probs=26.0
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
.|+++|+|.+.+ |..|+++|++|+-+|-..
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~ 35 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDGGP 35 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcCCC
Confidence 699999999988 677888999999998653
No 480
>PRK07208 hypothetical protein; Provisional
Probab=51.52 E-value=14 Score=38.34 Aligned_cols=31 Identities=26% Similarity=0.299 Sum_probs=26.6
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 190 PPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 190 ~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
..+|+++|+|...| |+.|+++|++|+-+|-+
T Consensus 4 ~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~ 36 (479)
T PRK07208 4 KKSVVIIGAGPAGLTAAYELLKRGYPVTVLEAD 36 (479)
T ss_pred CCcEEEECcCHHHHHHHHHHHHCCCcEEEEecC
Confidence 45799999999999 67899999999888754
No 481
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=51.43 E-value=74 Score=30.83 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=27.3
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEE--eCCHHHHH
Q 015966 189 SPPACLVPGAGLGRL--ALEISHLGFISQGN--EFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~Gn--D~S~~ML~ 225 (397)
++.+||++|.|.=-+ +.-|.+.|..|+-+ +++..+..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~ 64 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLD 64 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHH
Confidence 577999999997554 44566778887655 88887753
No 482
>PRK06126 hypothetical protein; Provisional
Probab=51.22 E-value=14 Score=39.25 Aligned_cols=31 Identities=32% Similarity=0.283 Sum_probs=26.7
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeC
Q 015966 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEF 219 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~ 219 (397)
....||++|+|.+.| |..|+++|++|+-+|-
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr 38 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVER 38 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 346899999999988 6778999999999983
No 483
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=51.14 E-value=1.4e+02 Score=32.30 Aligned_cols=104 Identities=19% Similarity=0.195 Sum_probs=61.2
Q ss_pred CCeEEEecCC-CC-hhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAG-LG-RLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCG-lG-RLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
..+|=++|.| .| .+|.-|+++||.|.+.|-+..-... |+...... .. +.+.
T Consensus 6 ~~~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~--l~~~~~~~-Ga--------------------~~~~---- 58 (493)
T PLN02350 6 LSRIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDE--TVERAKKE-GN--------------------LPLY---- 58 (493)
T ss_pred CCCEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHH--HHHhhhhc-CC--------------------cccc----
Confidence 3467788888 45 6788999999999999999866431 11100000 00 0000
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLY 338 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlY 338 (397)
+ .-...||.+- -..-|+|++|- .....+.+.++.+...|+||-++|+.|...|
T Consensus 59 -~---------a~s~~e~v~~------l~~~dvIi~~v--~~~~aV~~Vi~gl~~~l~~G~iiID~sT~~~ 111 (493)
T PLN02350 59 -G---------FKDPEDFVLS------IQKPRSVIILV--KAGAPVDQTIKALSEYMEPGDCIIDGGNEWY 111 (493)
T ss_pred -c---------CCCHHHHHhc------CCCCCEEEEEC--CCcHHHHHHHHHHHhhcCCCCEEEECCCCCH
Confidence 0 0001133221 12468898864 3334466777888889999999998766533
No 484
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=51.14 E-value=26 Score=34.67 Aligned_cols=41 Identities=15% Similarity=0.120 Sum_probs=32.7
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+|. |.++..+|+. |..|.+.+.+..-+..++
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~ 207 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMK 207 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 3678999999975 7787888775 889999999988876543
No 485
>PRK08013 oxidoreductase; Provisional
Probab=51.02 E-value=14 Score=37.52 Aligned_cols=31 Identities=19% Similarity=0.188 Sum_probs=26.5
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
..|++.|+|.+.+ |..|+++|++|+-+|-..
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~ 36 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRV 36 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCC
Confidence 4799999999987 667899999999999654
No 486
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=50.86 E-value=15 Score=36.98 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=26.9
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
....||++|+|.+.+ |..|+++|++|+-+|-.
T Consensus 5 ~~~dV~IvGaG~aGl~~A~~La~~G~~v~liE~~ 38 (392)
T PRK08773 5 SRRDAVIVGGGVVGAACALALADAGLSVALVEGR 38 (392)
T ss_pred CCCCEEEECcCHHHHHHHHHHhcCCCEEEEEeCC
Confidence 446799999999987 66689999999999864
No 487
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=50.76 E-value=16 Score=40.22 Aligned_cols=32 Identities=22% Similarity=0.147 Sum_probs=28.2
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
.+.+|+++|+|.+.| |..|+++|++|+-+|-.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVTVYDRH 359 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 467999999999988 68889999999999854
No 488
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=50.60 E-value=21 Score=37.36 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=19.0
Q ss_pred cccCCHHHHHHHHHhC-CCEEEEEee
Q 015966 351 SIELSLEDVKRVALHY-GFEFEKEKT 375 (397)
Q Consensus 351 ~ieLS~EEl~~ll~~~-GFeii~e~~ 375 (397)
.+..|.+|+++++++- -|+|.+.+.
T Consensus 284 ~Y~ps~eEv~~~Ie~~gsF~I~~le~ 309 (386)
T PLN02668 284 VYAPSLQDFKEVVEANGSFAIDKLEV 309 (386)
T ss_pred ccCCCHHHHHHHHhhcCCEEeeeeEE
Confidence 3456999999999954 488877554
No 489
>PRK06184 hypothetical protein; Provisional
Probab=50.49 E-value=15 Score=38.58 Aligned_cols=31 Identities=29% Similarity=0.317 Sum_probs=26.5
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 190 PPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 190 ~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
...||++|+|...| |..|++.|..|+-+|-.
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~~Gi~v~viE~~ 35 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELARRGVSFRLIEKA 35 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCcEEEEeCC
Confidence 35799999999988 66789999999999854
No 490
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=50.43 E-value=43 Score=32.90 Aligned_cols=33 Identities=24% Similarity=0.390 Sum_probs=25.8
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYY 222 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ 222 (397)
++.+||+.|+ ++|..+..+|+. |..|.+.. +..
T Consensus 154 ~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~~~ 189 (339)
T cd08249 154 KGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-SPK 189 (339)
T ss_pred CCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-Ccc
Confidence 5679999996 699999999886 88887765 443
No 491
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=50.41 E-value=16 Score=33.51 Aligned_cols=30 Identities=27% Similarity=0.329 Sum_probs=24.5
Q ss_pred eEEEecCC-CChh-HHHHHHcCCe-EEEEeCCH
Q 015966 192 ACLVPGAG-LGRL-ALEISHLGFI-SQGNEFSY 221 (397)
Q Consensus 192 rVLvPGCG-lGRL-a~eLA~~Gf~-V~GnD~S~ 221 (397)
+||++||| +|.. +..||+.|+. ++-+|...
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~ 33 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDV 33 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCE
Confidence 59999999 5764 7888999995 88888765
No 492
>PRK12767 carbamoyl phosphate synthase-like protein; Provisional
Probab=50.22 E-value=20 Score=35.07 Aligned_cols=31 Identities=23% Similarity=0.139 Sum_probs=27.0
Q ss_pred CeEEEecCCCC-hhHHHHHHc--CCeEEEEeCCH
Q 015966 191 PACLVPGAGLG-RLALEISHL--GFISQGNEFSY 221 (397)
Q Consensus 191 ~rVLvPGCGlG-RLa~eLA~~--Gf~V~GnD~S~ 221 (397)
.+||+.|+|.+ .++..|.+. |+.|.+.|.+.
T Consensus 2 ~~vLv~g~~~~~~~~~~l~~~~~g~~vi~~d~~~ 35 (326)
T PRK12767 2 MNILVTSAGRRVQLVKALKKSLLKGRVIGADISE 35 (326)
T ss_pred ceEEEecCCccHHHHHHHHHhccCCEEEEECCCC
Confidence 48999999999 688999999 49999998875
No 493
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=50.10 E-value=14 Score=37.39 Aligned_cols=30 Identities=17% Similarity=0.069 Sum_probs=25.9
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
..|++.|+|.+.+ |..|++.|+.|+-+|-.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 4799999999988 66788899999999963
No 494
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=50.01 E-value=69 Score=30.55 Aligned_cols=36 Identities=25% Similarity=0.257 Sum_probs=27.0
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (397)
++.+||+.|+ ++|..+.++++. |..|.+..-+..-.
T Consensus 162 ~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~~~~~ 200 (332)
T cd08259 162 KGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRSPEKL 200 (332)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCCHHHH
Confidence 5678999986 788887766554 99988887666543
No 495
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=49.90 E-value=18 Score=35.68 Aligned_cols=33 Identities=15% Similarity=0.379 Sum_probs=25.1
Q ss_pred CCCeEEEecCCCChhHHH----HHHcCCeEEEEeCCH
Q 015966 189 SPPACLVPGAGLGRLALE----ISHLGFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~e----LA~~Gf~V~GnD~S~ 221 (397)
+...||+-||-.|.++++ +++.||.|.+.--+-
T Consensus 6 ~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~ 42 (289)
T KOG1209|consen 6 QPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRL 42 (289)
T ss_pred CCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEcccc
Confidence 567899999988876554 556699998775543
No 496
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=49.83 E-value=43 Score=32.94 Aligned_cols=45 Identities=16% Similarity=0.061 Sum_probs=33.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C---CeEEEEeCCHHHHHHHHhhhhc
Q 015966 189 SPPACLVPGAGLGRLALEISHL-G---FISQGNEFSYYMMICSSFILNH 233 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G---f~V~GnD~S~~ML~~s~fiLn~ 233 (397)
.+.++-||.||-|.|.--|.-+ + -.|.|-|++..||..|+.-|+-
T Consensus 51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~L 99 (246)
T PF11599_consen 51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSL 99 (246)
T ss_dssp S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHC
T ss_pred CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhh
Confidence 5789999999999996666544 2 3688999999999999876653
No 497
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=49.78 E-value=26 Score=34.18 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=30.5
Q ss_pred CeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHHHH
Q 015966 191 PACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMICS 227 (397)
Q Consensus 191 ~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~~s 227 (397)
.+|-++|+|+ +.+|..+|+.|+.|...|.+..-+..+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~ 42 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKA 42 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence 4799999995 456888899999999999998876544
No 498
>PRK12831 putative oxidoreductase; Provisional
Probab=49.77 E-value=17 Score=38.23 Aligned_cols=32 Identities=22% Similarity=0.201 Sum_probs=28.0
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
.+.+|+++|+|.+.| |+.|+++|++|+-+|-.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~ 172 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEAL 172 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecC
Confidence 678999999998877 78999999999998843
No 499
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=49.56 E-value=41 Score=32.64 Aligned_cols=38 Identities=13% Similarity=0.087 Sum_probs=26.9
Q ss_pred CCeEEEe--c-CCCChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 015966 190 PPACLVP--G-AGLGRLALEISHL-GFISQGNEFSYYMMICS 227 (397)
Q Consensus 190 ~~rVLvP--G-CGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s 227 (397)
+.++|+. | -|+|.++..+|+. |..|.+.+-|..-+..+
T Consensus 143 ~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~ 184 (324)
T cd08291 143 GAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLL 184 (324)
T ss_pred CCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 4456663 3 4678888888776 99999998888665443
No 500
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=49.55 E-value=13 Score=36.88 Aligned_cols=29 Identities=34% Similarity=0.393 Sum_probs=25.1
Q ss_pred EEEecCCCChh--HHHHHHcC-CeEEEEeCCH
Q 015966 193 CLVPGAGLGRL--ALEISHLG-FISQGNEFSY 221 (397)
Q Consensus 193 VLvPGCGlGRL--a~eLA~~G-f~V~GnD~S~ 221 (397)
|+++|+|.+.+ |..|+++| ++|+-+|-..
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~~~ 33 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKIALIEANS 33 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 89999999988 56689999 9999998654
Done!