BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015967
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TC7|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or62
Length = 258
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 273 KRVCVHFAREILSSGRRKMESFMEEWQRKIPEGMQASFEILEGEVLTERLGVDLWI 328
+R + IL +R + + + E++RK P G+ + +E ER V L+I
Sbjct: 27 QRPIISLNERILEFNKRNITAIIAEYKRKDPSGLDVERDPIEYAKFMERYAVGLFI 82
>pdb|1LBF|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Syntase
(Igps)with Reduced
1-(O-Caboxyphenylamino)-1-Deoxyribulose 5-Phosphate
(Rcdrp)
pdb|1LBL|A Chain A, Crystal Structure Of Indole-3-Glycerol Phosphate Synthase
(Igps) In Complex With 1-(O-Carboxyphenylamino)-1-
Deoxyribulose 5'-Phosphate (Cdrp)
pdb|1A53|A Chain A, Complex Of Indole-3-Glycerolphosphate Synthase From
Sulfolobus Solfataricus With Indole-3-Glycerolphosphate
At 2.0 A Resolution
Length = 247
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 268 WKLDEKRVCVHFAREILSSGRRKMESFMEEWQRKIPEGMQASFEILEGEVLTERLGVDLW 327
++ +R + IL +R + + + E++RK P G+ + +E ER V L
Sbjct: 21 FRASRQRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYSKFMERYAVGLS 80
Query: 328 I 328
I
Sbjct: 81 I 81
>pdb|1IGS|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus At 2.0 A Resolution
pdb|1JUK|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus In A Trigonal Crystal Form
pdb|1JUL|A Chain A, Indole-3-Glycerolphosphate Synthase From Sulfolobus
Solfataricus In A Second Orthorhombic Crystal Form
Length = 248
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 268 WKLDEKRVCVHFAREILSSGRRKMESFMEEWQRKIPEGMQASFEILEGEVLTERLGVDLW 327
++ +R + IL +R + + + E++RK P G+ + +E ER V L
Sbjct: 22 FRASRQRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYSKFMERYAVGLS 81
Query: 328 I 328
I
Sbjct: 82 I 82
>pdb|3GDE|A Chain A, The Closed Conformation Of Atp-Dependent Dna Ligase From
Archaeoglobus Fulgidus
Length = 558
Score = 29.3 bits (64), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 12/75 (16%)
Query: 256 SKVDENRSKSCLWKLDEKRVCVHFAREILSSGRRKMES-------FMEEWQRKIPEGMQA 308
S V E R+ + WK D RV VH+ ++ R++E+ +EE ++ + G+
Sbjct: 239 SAVREMRTAAVEWKFDGSRVQVHWDGSRVTIYSRRLENVTNALPDIVEEIKKSVKPGV-- 296
Query: 309 SFEILEGEVLTERLG 323
IL+GEV+ + G
Sbjct: 297 ---ILDGEVIAVKEG 308
>pdb|2C3Z|A Chain A, Crystal Structure Of A Truncated Variant Of Indole-3-
Glycerol Phosphate Synthase From Sulfolobus Solfataricus
Length = 222
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 273 KRVCVHFAREILSSGRRKMESFMEEWQRKIPEGMQASFEILEGEVLTERLGVDLWI 328
+R + IL +R + + + E++RK P G+ + +E ER V L I
Sbjct: 1 QRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYSKFMERYAVGLSI 56
>pdb|1DY0|A Chain A, Murine Endostatin, Crystal Form Ii
pdb|1DY1|A Chain A, Murine Endostatin, Crystal Form Iii
Length = 188
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 286 SGRRKMESFMEEWQRKIPEGMQASFEILEGEVLTER 321
SGRR MES+ E W+ + + +L G +L ++
Sbjct: 130 SGRRLMESYCETWRTETTGATGQASSLLSGRLLEQK 165
>pdb|1KOE|A Chain A, Endostatin
Length = 172
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 286 SGRRKMESFMEEWQRKIPEGMQASFEILEGEVLTER 321
SGRR MES+ E W+ + + +L G +L ++
Sbjct: 120 SGRRLMESYCETWRTETTGATGQASSLLSGRLLEQK 155
>pdb|3TC6|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or63
Length = 258
Score = 28.5 bits (62), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 273 KRVCVHFAREILSSGRRKMESFMEEWQRKIPEGMQASFEILEGEVLTERLGVDLWI 328
+R + IL +R + + + E++RK P G+ + +E ER V L I
Sbjct: 27 QRPIISLNERILEFNKRNITAIIAEYKRKSPSGLDVERDPIEYAKFMERYAVGLKI 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,854,942
Number of Sequences: 62578
Number of extensions: 407876
Number of successful extensions: 1070
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1063
Number of HSP's gapped (non-prelim): 8
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)