BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015967
(397 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9BVC3|DCC1_HUMAN Sister chromatid cohesion protein DCC1 OS=Homo sapiens GN=DSCC1
PE=1 SV=2
Length = 393
Score = 151 bits (382), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 123/369 (33%), Positives = 188/369 (50%), Gaps = 28/369 (7%)
Query: 36 DLILLELDEKLLSDVL-YQRVSLRGQPDEDAVLCTQSKTFAIKFVGTSNSVFLIPPSDHS 94
D LLEL+ L + + +RG DE AVLC++ KT+ +K TSN + IP
Sbjct: 42 DFCLLELEPTLCQQLEDGHSLVIRGDKDEQAVLCSKDKTYDLKIADTSNMLLFIPG---- 97
Query: 95 SFCEIADDCSGKNRNQQSIASVIKVAPGNM-ELVEVAPRIDKLKLLLSENPYSSEEALEF 153
C+ D ++ + I + I N EL P++ KLK LL ENPY E
Sbjct: 98 --CKTPDQLKKEDSHCNIIHTEIFGFSNNYWELRRRRPKLKKLKKLLMENPY------EG 149
Query: 154 EDLEEMEKSKAGLYTWNDLVDKVQASDDELRSGLWALSAVELGGYWRIVDERYMGTVLAM 213
D ++ + S + YT DL+D++QAS++E+ + L L+A ++GGYWRI++ Y + +
Sbjct: 150 PDSQKEKDSNSSKYTTEDLLDQIQASEEEIMTQLQVLNACKIGGYWRILEFDYE---MKL 206
Query: 214 LLHNSVLND---WSLDALIEDEVVNVLVSDGFPPILASHCLRVYGSK-VDENRSKSCLWK 269
L H + L D WS + + + L P + HCL+ YG K VDE ++
Sbjct: 207 LNHVTQLVDSESWSFGKVPLNTCLQEL-GPLEPEEMIEHCLKCYGKKYVDEGE---VYFE 262
Query: 270 LDEKRVCVHFAREILSSGRR-KMESFMEEWQRKIPEGMQASFEILEGEVLTERLGVDLWI 328
LD ++C AR +L + + + F E WQ+ +PEGM S + L+G L +R I
Sbjct: 263 LDADKICRAAARMLLQNAVKFNLAEFQEVWQQSVPEGMVTSLDQLKGLALVDRHSRPEII 322
Query: 329 RAFSVSSLPANPAERFSILFGERPKWEWKDLQPYIRDLKVPGQSLEGLLLKYTRRTQPTL 388
V LP + ERF+ LF R KW +D+ PYI+DL Q++ LL KY+ +
Sbjct: 323 FLLKVDDLPEDNQERFNSLFSLREKWTEEDIAPYIQDLCGEKQTIGALLTKYSHSSMQ-- 380
Query: 389 DAEPVYSAR 397
+ VY++R
Sbjct: 381 NGVKVYNSR 389
>sp|Q66I84|DCC1_DANRE Sister chromatid cohesion protein DCC1 OS=Danio rerio GN=dscc1 PE=2
SV=1
Length = 391
Score = 149 bits (376), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 119/380 (31%), Positives = 181/380 (47%), Gaps = 24/380 (6%)
Query: 25 IAYHPLFGPN---DDLILLELDEKLLSDVLYQR-VSLRGQPDEDAVLCTQSKTFAIKFVG 80
+ Y FG N D L+E+DE L + + + +RG DE AVLC++ KT+ +K
Sbjct: 24 VTYCLSFGDNVSSGDYCLMEVDENLCKHIESGKSLIIRGDKDEHAVLCSEDKTYDLKIAD 83
Query: 81 TSNSVFLIPPSDHSSFCEIADDCSGKNRNQQSIASVI-KVAPGNMELVEVAPRIDKLKLL 139
TSN + +P C+ D S + Q + + I + EL PR+ KLK L
Sbjct: 84 TSNLLLFVPG------CKTPDQLSDIPASPQLMHTQIWGFSNCYWELRRQRPRLKKLKKL 137
Query: 140 LSENPYSSEEALEFEDLEEMEKSKAGL-YTWNDLVDKVQASDDELRSGLWALSAVELGGY 198
L ENPY M++ GL Y+ DL++++QAS +EL + L + A E+ G+
Sbjct: 138 LMENPYDGPPV-------GMQEEAPGLKYSMEDLLERIQASKEELEAHLGNVHACEIDGF 190
Query: 199 WRIVDERYMGTVLAMLLHNSVLNDWSLDALIEDEVVNVLVSDGFPPILASHCLRVYGSKV 258
WRI+D Y +L + WS + + L S P + HCL YG +
Sbjct: 191 WRILDFDYEMKLLGHVTQLVDSESWSFSKVPLSVCLEELGSLE-PKAMIEHCLNCYGRR- 248
Query: 259 DENRSKSCLWKLDEKRVCVHFAREILSSGRR-KMESFMEEWQRKIPEGMQASFEILEGEV 317
+ ++ LDE +VC A+ +L + + + F E WQ+ +PEGM + L G
Sbjct: 249 HSDEDNQVMYALDEDKVCRATAQLLLQNAVKFNLSEFQEVWQQSVPEGMGTRLDQLRGLA 308
Query: 318 LTERLGVDLWIRAFSVSSLPANPAERFSILFGERPKWEWKDLQPYIRDLKVPGQSLEGLL 377
L +R I V LP + ERF+ LF R KW D++PYI+DL Q+ LL
Sbjct: 309 LIDRSSKPETISLLRVEDLPEDTLERFNSLFSLREKWTQDDIEPYIQDLCGEKQTTGALL 368
Query: 378 LKYTRRTQPTLDAEPVYSAR 397
K+ R + + VY++R
Sbjct: 369 TKHARSSMQ--NGIKVYNSR 386
>sp|Q6GL75|DCC1_XENTR Sister chromatid cohesion protein DCC1 OS=Xenopus tropicalis
GN=dscc1 PE=2 SV=1
Length = 391
Score = 144 bits (364), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 112/355 (31%), Positives = 168/355 (47%), Gaps = 23/355 (6%)
Query: 36 DLILLELDEKLLSDV-LYQRVSLRGQPDEDAVLCTQSKTFAIKFVGTSNSVFLIPPSDHS 94
D L+ELD+ L + + +RG + AVLC+Q KT+ +K TSN + IP
Sbjct: 39 DYSLMELDDTLCKQIEAGDSLVIRGDKSDHAVLCSQDKTYDLKIADTSNLLLFIPG---- 94
Query: 95 SFCEIADDCSGKNRNQQSIASVIKVAPGNM-ELVEVAPRIDKLKLLLSENPYSSEEALEF 153
C+ D + I I + EL P++ KLK LL EN Y+ E
Sbjct: 95 --CKTPDQLPADQQPLTIINCEIAGFSNHYWELRRCRPKLKKLKKLLMENTYNGPE---- 148
Query: 154 EDLEEMEKSKAGLYTWNDLVDKVQASDDELRSGLWALSAVELGGYWRIVDERYMGTVLAM 213
E E L+T DL++ +QAS++EL L A+ A + G+WR++D Y + +
Sbjct: 149 ---NERESQDNSLHTTEDLLNMIQASNEELVDHLKAIHACSINGFWRLLDFDYE---MKL 202
Query: 214 LLHNSVLND---WSLDALIEDEVVNVLVSDGFPPILASHCLRVYGSKVDENRSKSCLWKL 270
L H + L D WS + + L S P + HCL YG ++ + + + L
Sbjct: 203 LNHITQLIDSESWSFSKVPLPVCLQELRSLE-PEEMIEHCLTCYGKRLIDEGTGGDFFAL 261
Query: 271 DEKRVCVHFAREILSSGRR-KMESFMEEWQRKIPEGMQASFEILEGEVLTERLGVDLWIR 329
DE ++C A +L + + + F E WQ+ +PEGM + L+G L +R I
Sbjct: 262 DEDKICRATALMLLQNAVKFNLAEFQEVWQQSVPEGMNTRLDQLKGLALVDRTSRPETIF 321
Query: 330 AFSVSSLPANPAERFSILFGERPKWEWKDLQPYIRDLKVPGQSLEGLLLKYTRRT 384
LP + ERF+ LFG R KW D+ PYI+DL Q++ LL KY R +
Sbjct: 322 LLKTEDLPEDTQERFNTLFGMREKWAEADIAPYIKDLCGEKQTIGALLTKYARSS 376
>sp|Q14AI0|DCC1_MOUSE Sister chromatid cohesion protein DCC1 OS=Mus musculus GN=DSCC1
PE=2 SV=1
Length = 399
Score = 144 bits (363), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 120/369 (32%), Positives = 184/369 (49%), Gaps = 28/369 (7%)
Query: 36 DLILLELDEKLLSDV-LYQRVSLRGQPDEDAVLCTQSKTFAIKFVGTSNSVFLIPPSDHS 94
D LLEL+ L + +RG DE AVLC++ KT+ +K TSN + IP
Sbjct: 48 DFCLLELEPALCQQLEAGDSFVIRGDKDEQAVLCSKDKTYDLKIADTSNMLLFIPG---- 103
Query: 95 SFCEIADDCSGKNRNQQSIASVIKVAPGNM-ELVEVAPRIDKLKLLLSENPYSSEEALEF 153
C+ D + + + I N EL P++ KLK LL EN Y ++ +
Sbjct: 104 --CKTPDQLKEEETPSAIVHTEIFGFSNNYWELRRCRPKLKKLKRLLMENTYEGPDSQKE 161
Query: 154 EDLEEMEKSKAGLYTWNDLVDKVQASDDELRSGLWALSAVELGGYWRIVDERYMGTVLAM 213
ED +SK YT DL++ +QAS++E+ + L L+A E+GGYWRI++ Y + +
Sbjct: 162 ED---ASRSK---YTTEDLLNHIQASEEEIMAQLQVLNACEIGGYWRILEFDYE---IKL 212
Query: 214 LLHNSVLND---WSLDALIEDEVVNVLVSDGFPPILASHCLRVYGSK-VDENRSKSCLWK 269
L H + L D WSLD + + L P + HCL+ YG + VD++ ++
Sbjct: 213 LNHVTQLVDSESWSLDRVPLTVCLQEL-GPLEPEEMIEHCLKCYGKRYVDKD---DVYFE 268
Query: 270 LDEKRVCVHFAREILSSGRR-KMESFMEEWQRKIPEGMQASFEILEGEVLTERLGVDLWI 328
LD ++C A +L + + + F E WQ+ +PEGM + L+G L +R I
Sbjct: 269 LDADKICRVTAEMLLQNAVKFNLAEFQEVWQQSVPEGMTTRLDQLKGLALVDRNSRPEII 328
Query: 329 RAFSVSSLPANPAERFSILFGERPKWEWKDLQPYIRDLKVPGQSLEGLLLKYTRRTQPTL 388
V LP +RF+ LF R KW +D+ PYI+DL Q++ LL KY+R +
Sbjct: 329 FLLKVDDLPEGTQDRFNSLFSLREKWTEEDITPYIQDLCGEKQTIGALLTKYSRSSMQ-- 386
Query: 389 DAEPVYSAR 397
+ VY++R
Sbjct: 387 NGIKVYNSR 395
>sp|Q6GMB0|DCC1_XENLA Sister chromatid cohesion protein DCC1 OS=Xenopus laevis GN=dscc1
PE=2 SV=1
Length = 390
Score = 137 bits (345), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 114/359 (31%), Positives = 168/359 (46%), Gaps = 32/359 (8%)
Query: 36 DLILLELDEKLLSDV-LYQRVSLRGQPDEDAVLCTQSKTFAIKFVGTSNSVFLIPPSDHS 94
D L+ELD+ L + + +RG + AVLC+Q KT+ +K TSN + IP
Sbjct: 39 DYSLMELDDTLCKQIEAGDSLVIRGDKSDHAVLCSQDKTYDLKIADTSNLLLFIPG---- 94
Query: 95 SFCEIADDCSGKNRNQQSIASVIKVAPGNM-----ELVEVAPRIDKLKLLLSENPYSSEE 149
C++ D +QQ + SVI EL P++ KLK LL EN Y+ E
Sbjct: 95 --CKLPDQLPA---DQQPL-SVIHCEIAGFSNHYWELRRCRPKLKKLKKLLMENTYNGPE 148
Query: 150 ALEFEDLEEMEKSKAGLYTWNDLVDKVQASDDELRSGLWALSAVELGGYWRIVDERYMGT 209
E + LYT DL+ +Q+S +EL L A+ A + G WR++D Y
Sbjct: 149 N------ESESSQETSLYTTEDLLSVIQSSTEELMDHLKAIHACNIKGIWRLLDFDYE-- 200
Query: 210 VLAMLLHNSVLND---WSLDALIEDEVVNVLVSDGFPPILASHCLRVYGSKVDENRSKSC 266
+ +L H + L D WS + + L S P + HCL YG ++ E
Sbjct: 201 -MKLLNHITQLIDSESWSFSKVPLQVCLQELRSLE-PEEMIEHCLTCYGKRLMEEGGDC- 257
Query: 267 LWKLDEKRVCVHFAREILSSGRR-KMESFMEEWQRKIPEGMQASFEILEGEVLTERLGVD 325
+ LDE ++C A +L + + + F E WQ+ +P+GM + L+G L +R
Sbjct: 258 -FALDEDKICRATALMLLQNAVKFNLAEFQEVWQQSVPDGMNTRLDQLKGLALVDRTSRP 316
Query: 326 LWIRAFSVSSLPANPAERFSILFGERPKWEWKDLQPYIRDLKVPGQSLEGLLLKYTRRT 384
I LP + ERF+ LFG R KW D+ PYI+DL Q++ LL KY R +
Sbjct: 317 ETIFLLQTEDLPEDTQERFNTLFGMREKWTEADIAPYIQDLCGEKQTIGALLTKYARSS 375
>sp|Q55BA5|DCC1_DICDI Probable sister chromatid cohesion protein DCC1 OS=Dictyostelium
discoideum GN=DDB_G0271400 PE=3 SV=1
Length = 376
Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 99/378 (26%), Positives = 190/378 (50%), Gaps = 63/378 (16%)
Query: 33 PNDDLILLELDEKLLSDVLY-QRVSLRGQPDEDAVLCTQSKTFAIKFVGTSNSVFLIPPS 91
P+ D LE ++++L + +++ ++G ++AVLCT KTF I+ TSNS+ L+
Sbjct: 19 PDTDYRFLEANQEILDQIKNNKKLVIKGSLTDEAVLCTDDKTFTIRAGHTSNSMLLV--- 75
Query: 92 DHSSFCEIADDCSGKNRNQQSIASVIKVA-PGNMELVEVAPRIDKLKLLLSENPYSS--E 148
K+ N+ IKVA ++EL E+ P+++ LK LL YS +
Sbjct: 76 -------------SKDTNK------IKVALQYHLELTEIQPKLNVLKDLL----YSKAID 112
Query: 149 EALEFEDLEEMEKSKAGLYTWNDLVDKVQASDDELRSGLWALSAVELGGYWRIVDERYMG 208
+L+FED E + G +++++++D++Q+S+ E++ L L+ + + ++ E Y
Sbjct: 113 NSLDFEDDENL----LG-FSFDEIIDRIQSSEKEIQQYLLKLNTLIYKNRYIVLSENYEF 167
Query: 209 TVLAMLLHNSVLNDWSLDALIEDEVVNVLVSDGFPPILASHCLRVYGSK----------- 257
+L ++L + + W LD + D+ + + + P + HCL++Y +
Sbjct: 168 KILELILSEATIGAWKLDNIPIDKCIENIRA---PEFIIKHCLQLYSKQKSPTNSGGGGE 224
Query: 258 ------VDENRSKSCLWKLDEKRVCVHFAREILSSGRR---KMESFMEEWQRKIPEGMQA 308
D+N ++ + LD +VC+ A+++L+ + K E FM+ W+ +P +Q
Sbjct: 225 EIKGGGGDDNNDEN-ICSLDFNKVCIFRAKQLLTLSNKSNMKFEDFMDNWKDTLPIEIQP 283
Query: 309 SFEILEGEVL----TERLGVDLWIRAFSVSSLPANPAERFSILFGERPKWEWKDLQPYIR 364
+F +L+G + + + ++ + S LP P RF LF +W D++P+I+
Sbjct: 284 NFSMLKGIAILIPSSSTNPKEKSVKFINESILPTIPKARFKELFQISTRWSIDDIEPFIK 343
Query: 365 DLKVPGQSLEGLLLKYTR 382
PG SLE +L Y+R
Sbjct: 344 STIPPGNSLEQFILTYSR 361
>sp|P25559|DCC1_YEAST Sister chromatid cohesion protein DCC1 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DCC1 PE=1 SV=2
Length = 380
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 89/393 (22%), Positives = 163/393 (41%), Gaps = 31/393 (7%)
Query: 22 SISIAYHPLFGPNDDLILL--ELDEKLLSDVLYQRVSLRG--QPDEDAVLCTQSKTFAIK 77
SI++ P + P+ LI L EL + + V ++ + + + VLC+ KT+ +K
Sbjct: 2 SINLHSAPEYDPSYKLIQLTPELLDIIQDPVQNHQLRFKSLDKDKSEVVLCSHDKTWVLK 61
Query: 78 FVGTSNSVFLIP---PSDHSSFCEIADDCSGKNRNQQSIASVIKVAPGNMELVEVAPRID 134
SN+V L+ P +F E G ++ + K E R
Sbjct: 62 QRKHSNTVLLMREFVPEQPITFDETL--LFGLSKPYMDVVGFAKTES------EFETRET 113
Query: 135 KLKLLLSENPYSSEEALEFEDLEEMEKSKAGLYTWNDLVDKVQASDDELRSGLWALSAVE 194
+L L+ P + E L+F D S + T +L++ S E S +
Sbjct: 114 HGELNLNSVPIYNGE-LDFSDKIMKRSSTKVIGTLEELLENSPCSALEGISKWHKIGGSV 172
Query: 195 LGGYWRIVDERYMGTVLAMLLHNSVLNDWSLDAL-IED--EVVNVLVSDGFPPILASHCL 251
G I+ + ++ L +LL +++ L L +ED V + D F P
Sbjct: 173 KDGVLCILSQDFLFKALHVLLMSAMAESLDLQHLNVEDTHHAVGKDIEDEFNPYTREIIE 232
Query: 252 RVYGS-KVDENRSKSCLWKLDEKRVC----VHFAREILSSGRRKMESFMEEWQRKIPEGM 306
V V E +++ W+L + + R+ +S ++ F+ +W+ P
Sbjct: 233 TVLNKFAVQEQEAENNTWRLRIPFIAQWYGIQALRKYVSGISMPIDEFLIKWKSLFPPFF 292
Query: 307 QASFEI--LEGEVLTERLGVDLWIRAFSVSSLPANPAERFSILFGERPKWEWKDLQPYIR 364
+I L G D ++ + S+LP +P ERF +LF + +W+ +D++P I
Sbjct: 293 PCDIDIDMLRGYHFKP---TDKTVQYIAKSTLPMDPKERFKVLFRLQSQWDLEDIKPLIE 349
Query: 365 DLKVPGQSLEGLLLKYTRRTQPTLDAEPVYSAR 397
+L G ++ ++KY RR + L + V ++R
Sbjct: 350 ELNSRGMKIDSFIMKYARRKR--LGKKTVVTSR 380
>sp|Q09732|DCC1_SCHPO Sister chromatid cohesion protein dcc1 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dcc1 PE=3 SV=2
Length = 357
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 48/94 (51%), Gaps = 5/94 (5%)
Query: 292 ESFMEEWQRKIPEGMQA--SFEILEGEVLTERLGVDLWIRAFSVSSLPANPAERFSILFG 349
+ F++ W ++P + S +L+G + I+ S LP P+ RF LF
Sbjct: 252 DEFIQLWDNRLPYPCKGLPSLNLLKGYYFHDTPNT---IQYLSGDQLPREPSRRFQSLFQ 308
Query: 350 ERPKWEWKDLQPYIRDLKVPGQSLEGLLLKYTRR 383
+ KW +++L +++DL + +E L+LKY R+
Sbjct: 309 LKSKWLYEELWSFVKDLALSKSRVEALILKYGRK 342
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 148,627,723
Number of Sequences: 539616
Number of extensions: 6193537
Number of successful extensions: 16154
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 16118
Number of HSP's gapped (non-prelim): 15
length of query: 397
length of database: 191,569,459
effective HSP length: 120
effective length of query: 277
effective length of database: 126,815,539
effective search space: 35127904303
effective search space used: 35127904303
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (28.5 bits)