Query 015967
Match_columns 397
No_of_seqs 126 out of 223
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 02:34:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015967.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015967hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09724 DUF2036: Uncharacteri 100.0 2.9E-80 6.4E-85 611.8 34.1 319 36-364 1-325 (325)
2 KOG0798 Uncharacterized conser 100.0 3.8E-80 8.3E-85 592.5 26.4 368 9-394 5-379 (380)
3 PF12419 DUF3670: SNF2 Helicas 71.2 7.6 0.00016 33.8 4.8 52 165-216 63-123 (141)
4 PF04801 Sin_N: Sin-like prote 71.1 30 0.00065 35.6 10.0 86 165-258 283-379 (421)
5 PF07981 Plasmod_MYXSPDY: Plas 62.5 5.1 0.00011 21.8 1.2 15 26-44 2-16 (17)
6 KOG4705 Uncharacterized conser 39.3 1E+02 0.0022 30.0 6.7 113 168-282 53-169 (303)
7 PF13545 HTH_Crp_2: Crp-like h 36.5 1.4E+02 0.003 22.1 6.1 45 165-209 27-75 (76)
8 PF13979 SopA_C: SopA-like cat 29.3 88 0.0019 28.3 4.3 53 245-303 78-135 (172)
9 cd00762 NAD_bind_malic_enz NAD 28.6 80 0.0017 30.4 4.2 70 12-90 123-193 (254)
10 PF13565 HTH_32: Homeodomain-l 25.5 73 0.0016 23.9 2.8 31 337-367 32-62 (77)
11 PRK10512 selenocysteinyl-tRNA- 23.7 5.6E+02 0.012 27.9 10.1 88 165-255 376-466 (614)
12 smart00342 HTH_ARAC helix_turn 21.3 3.3E+02 0.0071 19.7 6.3 75 167-256 2-78 (84)
13 PF14394 DUF4423: Domain of un 20.7 3.2E+02 0.007 24.4 6.4 37 168-204 41-84 (171)
14 COG1844 Uncharacterized protei 20.4 1.3E+02 0.0028 25.5 3.4 31 188-218 22-52 (125)
15 PRK13239 alkylmercury lyase; P 20.4 1.5E+02 0.0032 27.7 4.2 35 163-197 33-67 (206)
No 1
>PF09724 DUF2036: Uncharacterized conserved protein (DUF2036); InterPro: IPR019128 Sister chromatid cohesion protein DCC1 is a component of the RFC-like complex CTF18-RFC. This complex is required for the efficient establishment of chromosome cohesion during S-phase and may load or unload POL30/PCNA. During a clamp loading circle, the RFC:clamp complex binds to DNA and the recognition of the double-stranded/single-stranded junction stimulates ATP hydrolysis by RFC. The complex presumably provides bipartite ATP sites in which one subunit supplies a catalytic site for hydrolysis of ATP bound to the neighbouring subunit. Dissociation of RFC from the clamp leaves the clamp encircling DNA [, ].
Probab=100.00 E-value=2.9e-80 Score=611.81 Aligned_cols=319 Identities=37% Similarity=0.700 Sum_probs=283.0
Q ss_pred ceEEEecChHHHHHhhcC-ceEEecCCCCCeEEecCCCeEEEEEecccceeEecCCCCCCCcccccccCCCCCCCcccce
Q 015967 36 DLILLELDEKLLSDVLYQ-RVSLRGQPDEDAVLCTQSKTFAIKFVGTSNSVFLIPPSDHSSFCEIADDCSGKNRNQQSIA 114 (397)
Q Consensus 36 ~ykLLEL~~eLL~~l~~g-~L~iKg~~~d~aVLCT~dkTy~irq~~tSNslLL~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (397)
+||||||||+||++|++| +|+|||.++++|||||++|||+|||++|||||||+++..++.... +.........+...+
T Consensus 1 ~ykLLEl~~~Ll~~l~~~~~L~iKg~~~~~aVLCT~~kTy~vrq~~~SNsllL~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (325)
T PF09724_consen 1 EYKLLELPPELLEALESGESLTIKGDPDDDAVLCTDDKTYSVRQVNTSNSLLLMPPCQPPDDSD-PNDDSSTNERTDPTL 79 (325)
T ss_pred CcEEEECCHHHHHHHhCCCeEEEecCCCCceEEcCCCCcEEEEEeecCceeEEcCCCCCccccc-ccccccccccccCce
Confidence 599999999999999998 899999999999999999999999999999999998865443210 000000111234467
Q ss_pred eEEeeecceeEEEeccccHHHHHhhhhcCCCCChhhhhhhhhHHHhhhcCCCCCHHHHHHHcccCHHHHHHHhhhcCeEE
Q 015967 115 SVIKVAPGNMELVEVAPRIDKLKLLLSENPYSSEEALEFEDLEEMEKSKAGLYTWNDLVDKVQASDDELRSGLWALSAVE 194 (397)
Q Consensus 115 ~v~~~~~~~lEL~~~~p~l~~L~~lL~~~pY~g~~~e~~~~~~~~~~~~~~~~t~~eL~~~vqaS~~El~~~l~~l~a~e 194 (397)
.+++.++++|||++++|++++|+.+|+..+|+|++.+... ......||+++|++++|||++||.++|.+++||+
T Consensus 80 ~~~~~~~~~~El~~~~p~l~~L~~ll~~~~y~g~~~e~~~------~~~~~~~t~~~L~~~vq~S~~El~~~l~~l~~~e 153 (325)
T PF09724_consen 80 VVIASCSSYLELRPIAPRLNKLRELLRLPPYDGEEDEESN------DGNKSDYTLDELLDNVQASEAELRQALKELGACE 153 (325)
T ss_pred EEEEEeccEEEEEecCCcHHHHHHHhcCCcccCCcccccc------ccccccccHHHHHHhCCccHHHHHHHHHHCCEEE
Confidence 8889999999999999999999999999999998753211 1123459999999999999999999999999999
Q ss_pred ECCEEEEeChHHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHhhcCCCcHHHHHHHHHHhCccccCCCCcceeeecChhh
Q 015967 195 LGGYWRIVDERYMGTVLAMLLHNSVLNDWSLDALIEDEVVNVLVSDGFPPILASHCLRVYGSKVDENRSKSCLWKLDEKR 274 (397)
Q Consensus 195 i~G~~r~Ls~~y~~~~L~~il~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~vi~~vl~~~~~~~~~~~g~~~~~~Ld~~k 274 (397)
|||+||+||++|+.++|+.||+.+++++|+++.++++++++++.+++||++|++|||++||+..++++ . +|+||++|
T Consensus 154 i~G~~r~Ls~~~~~~~L~~il~~~~~~~~~~~~~~~~~~~~~l~~~~~p~~v~~~vl~~~~~~~~~~~-~--~~~Ld~~k 230 (325)
T PF09724_consen 154 IDGYWRLLSPSYLFEILDLILTSAVEESWDLDQFPVEEVVEALEEDEYPREVVEHVLRKFGTREDDDD-S--WWKLDEDK 230 (325)
T ss_pred ECCEEEECCHHHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHhcccCCCHHHHHHHHHHhCCCccCCC-c--eEEcCHHH
Confidence 99999999999999999999999999999999999999999999889999999999999998876532 2 29999999
Q ss_pred HHHHHHHHHhhc-C--CCCHHHHHHHHHHhCCC--CcccccccceeeEEeeecCCcceEEEecCCCCCcCHHHHHHHHHc
Q 015967 275 VCVHFAREILSS-G--RRKMESFMEEWQRKIPE--GMQASFEILEGEVLTERLGVDLWIRAFSVSSLPANPAERFSILFG 349 (397)
Q Consensus 275 I~r~~a~~lL~~-~--~~~l~eFl~~Wk~~vP~--~~~~~l~~L~G~~l~~~~~~~~~I~y~~~~~LP~dp~~Rf~~LF~ 349 (397)
||||+|+++|++ . +|+++|||++||+++|+ ++++++++|+|+|+++..+.+++|+|||+++||.||++||++||+
T Consensus 231 i~~~~a~~lL~~~~~~~~~~~eFl~~Wk~~lP~~~~~~~~l~~L~G~~~~~~~~~~~~I~y~~~~~Lp~dp~~Rf~~LF~ 310 (325)
T PF09724_consen 231 ICRWFAIQLLKAHASSSFPLDEFLEAWKSSLPEFFGMDPDLEMLRGLALIDDRPSPTTIQYFPESDLPTDPKERFKELFK 310 (325)
T ss_pred HHHHHHHHHHHhcccCCCCHHHHHHHHHHhCCCcCCCCCCHHHhCCeeEeecCCCCCEEEEecHHHCCCCHHHHHHHHHh
Confidence 999999999998 4 79999999999999999 667899999999999877899999999999999999999999999
Q ss_pred CCCCCChhhhhhhhh
Q 015967 350 ERPKWEWKDLQPYIR 364 (397)
Q Consensus 350 ~~~kW~~~Ei~Pyi~ 364 (397)
+|++|+++||+|||+
T Consensus 311 ~~~kW~~~ei~Pyi~ 325 (325)
T PF09724_consen 311 LRPKWTLDEIEPYIE 325 (325)
T ss_pred cCCCCCHHHHHHhhC
Confidence 999999999999996
No 2
>KOG0798 consensus Uncharacterized conserved protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.8e-80 Score=592.49 Aligned_cols=368 Identities=35% Similarity=0.532 Sum_probs=325.0
Q ss_pred CchhhhhccCCCC----ceeEEecCCCCC-CCceEEEecChHHHHHhhcC-ceEEecCCCCCeEEecCCCeEEEEEeccc
Q 015967 9 RDAEAVLNLQQNS----SISIAYHPLFGP-NDDLILLELDEKLLSDVLYQ-RVSLRGQPDEDAVLCTQSKTFAIKFVGTS 82 (397)
Q Consensus 9 ~~~~~~~~~~~~~----~~~l~f~~~~~~-~~~ykLLEL~~eLL~~l~~g-~L~iKg~~~d~aVLCT~dkTy~irq~~tS 82 (397)
+++.+.-.|.+|+ .+.+.|+|+|++ .+.|.||++++++++++++| +|+|||+++++|||||+||||.||++++|
T Consensus 5 ~a~~~~~~L~~~~~~~~~~~l~f~P~~~~~s~~~~LLeld~~~i~~~~eg~~L~fkgd~de~aVLCT~dkTy~vK~~~~S 84 (380)
T KOG0798|consen 5 DAQFTFAKLEANELLPRSILLKFPPEYSDISSEFLLLELDDDLIQQLEEGHSLVFKGDFDEDAVLCTDDKTYAVKQVEQS 84 (380)
T ss_pred hhhhhhhhhhhcccchhhhcccCCCccccchhhhhhhcccHHHhhchhcCceEEEecCCccceEEecCCceeeeeeeccc
Confidence 5677888889888 557888888865 89999999999999999999 89999999999999999999999999999
Q ss_pred ceeEecCCCCCCCcccccccCCCCCCCcccceeEEeeecceeEEEeccccHHHHHhhhhcCCCCChhhhhhhhhHHHhhh
Q 015967 83 NSVFLIPPSDHSSFCEIADDCSGKNRNQQSIASVIKVAPGNMELVEVAPRIDKLKLLLSENPYSSEEALEFEDLEEMEKS 162 (397)
Q Consensus 83 NslLL~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~lEL~~~~p~l~~L~~lL~~~pY~g~~~e~~~~~~~~~~~ 162 (397)
|||||++++.++++. .+..+.+.+.. ...+.+ ..++|++++.|+|.+|+.+|.++||+|++.+-+ .+
T Consensus 85 Ns~LLip~~~~~~~~---~~~p~~~~~~~-~~~~f~--~~~~E~re~~p~l~klk~il~~~~~~~~e~~~e-------~~ 151 (380)
T KOG0798|consen 85 NSVLLIPELKPADDV---LTDPDLSKNYI-DTKIFA--FLEFELREIYPRLFKLKKILYENELDWDEKEVE-------LE 151 (380)
T ss_pred ceEEEecCCcCcccc---ccCcCCCCccc-cceeec--cceeeeeehhhhhhhhhhhhhcCCCCCcHHHhh-------hc
Confidence 999999998665432 11011111111 112222 238999999999999999999999999985321 11
Q ss_pred cCCCCCHHHHHHHcccCHHHHHHHhhhcCeEEECCEEEEeChHHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHhhcCCC
Q 015967 163 KAGLYTWNDLVDKVQASDDELRSGLWALSAVELGGYWRIVDERYMGTVLAMLLHNSVLNDWSLDALIEDEVVNVLVSDGF 242 (397)
Q Consensus 163 ~~~~~t~~eL~~~vqaS~~El~~~l~~l~a~ei~G~~r~Ls~~y~~~~L~~il~~~~~~~~~l~~~~~~~~~~~l~~~~~ 242 (397)
....||++||++.||||++|++.+|++++||++||+||+||++|+.++|++|+..+++++|+++.++.+.++.++.++.|
T Consensus 152 ~~~~yT~~dLL~sVqaS~eE~~~~Lq~l~a~~~dG~~riLs~~Y~~~iL~~il~l~~~~~wsf~~v~~~~~v~~l~~dEF 231 (380)
T KOG0798|consen 152 SNSVYTLEDLLNSVQASREEVMSGLQKLFAIVKDGFLRILSPDYLCKILNMILVLADEESWSFDEVDLKELVNALKDDEF 231 (380)
T ss_pred ccccccHHHHHHhccccHHHHHHHHHhcCcEeecCEEEEecHHHHHHHHHHHHHHhhhhcccccchhHHHHhhccccccC
Confidence 22339999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred cHHHHHHHHHHhCccccCCCCcceeeecChhhHHHHHHHHHhhc-CCCCHHHHHHHHHHhCCCCcccccccceeeEEeee
Q 015967 243 PPILASHCLRVYGSKVDENRSKSCLWKLDEKRVCVHFAREILSS-GRRKMESFMEEWQRKIPEGMQASFEILEGEVLTER 321 (397)
Q Consensus 243 p~~vi~~vl~~~~~~~~~~~g~~~~~~Ld~~kI~r~~a~~lL~~-~~~~l~eFl~~Wk~~vP~~~~~~l~~L~G~~l~~~ 321 (397)
|++++.|||++||.+.+..+++ |+|++..||||+|+++|+. .+++++|||+.||+.+|+||+|++++|+|.+++++
T Consensus 232 pe~~v~~vl~~f~~k~n~~~~k---f~l~~~li~r~~ar~iL~~~~~~~l~eF~e~W~~~lP~gm~~~~~~L~gl~l~~k 308 (380)
T KOG0798|consen 232 PEDSVEHVLRSFGIKDNEEPKK---FRLDEELICRWYARQILRGIVSFSLDEFMELWKKRLPYGMPCDIKQLEGLGLLDK 308 (380)
T ss_pred cHHHHHHHHHHhcccccCCCCc---cccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCCCcChhhccccccccc
Confidence 9999999999999877665533 9999999999999999998 67999999999999999999999999999999999
Q ss_pred cCCcceEEEecCCCCCcCHHHHHHHHHcCCCCCChhhhhhhhhccCCCCCChhHHHHhhhhccCcCCCCCccc
Q 015967 322 LGVDLWIRAFSVSSLPANPAERFSILFGERPKWEWKDLQPYIRDLKVPGQSLEGLLLKYTRRTQPTLDAEPVY 394 (397)
Q Consensus 322 ~~~~~~I~y~~~~~LP~dp~~Rf~~LF~~~~kW~~~Ei~Pyi~~l~~~~~~~d~lllKyaR~~~~~~d~~~~y 394 (397)
.|.+++|+|+.+++||++|++||+.||++|++|++++|+|||++++..|.+++.+++||||..|. .+.+||
T Consensus 309 ~~~~~~i~~la~~~LP~~pkeRf~~LF~~r~~W~~edl~Pyi~~l~~~~~~~~~~v~~~~~~~r~--~~~k~~ 379 (380)
T KOG0798|consen 309 GPFSKLILYLAVEDLPTTPKERFSVLFELRSRWTMEDLEPYIEDLSRNGYMIDFGVSKYIRPCRN--QELKVL 379 (380)
T ss_pred CCcchhhhhhhHhhcCCCHHHHHHHHHHHHhhhhHHHhhHHHHHHhhcchhhhhHHHHHhHHHHh--ccceec
Confidence 99999999999999999999999999999999999999999999999999999999999999995 344444
No 3
>PF12419 DUF3670: SNF2 Helicase protein ; InterPro: IPR022138 This domain family is found in bacteria, archaea and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF00271 from PFAM, PF00176 from PFAM. Most of the proteins in this family are annotated as SNF2 helicases but there is little accompanying literature to confirm this.
Probab=71.17 E-value=7.6 Score=33.78 Aligned_cols=52 Identities=19% Similarity=0.300 Sum_probs=41.6
Q ss_pred CCCCHHHHH--------HHcccCHHHHHHHhh-hcCeEEECCEEEEeChHHHHHHHHHHHH
Q 015967 165 GLYTWNDLV--------DKVQASDDELRSGLW-ALSAVELGGYWRIVDERYMGTVLAMLLH 216 (397)
Q Consensus 165 ~~~t~~eL~--------~~vqaS~~El~~~l~-~l~a~ei~G~~r~Ls~~y~~~~L~~il~ 216 (397)
..+++++|+ ...+.|++||.+-.. .-+.+.++|+|..+||+-+.+++..+-.
T Consensus 63 ~~lgl~~l~~f~W~lalGd~~Ls~eEf~~L~~~~~~LV~~rg~WV~ld~~~l~~~~~~~~~ 123 (141)
T PF12419_consen 63 SFLGLDQLLDFDWELALGDEELSEEEFEQLVEQKRPLVRFRGRWVELDPEELRRALAFLEK 123 (141)
T ss_pred CccChHHHhcceEEEEECCEECCHHHHHHHHHcCCCeEEECCEEEEECHHHHHHHHHHHHh
Confidence 445566655 367899999999888 5778899999999999888888777655
No 4
>PF04801 Sin_N: Sin-like protein conserved region; InterPro: IPR006886 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. RNA polymerase III (Pol III) is a complex consisting of 17 subunits, which synthesizes small RNAs, such as 5S rRNA and tRNAs. Pol III is essential for efficient transcription from both the type 2 VAI and type 3 U6 RNA polymerase III promoters and plays a key role in sensing and limiting infection by intracellular bacteria and DNA viruses. Subunit c5 is a specific peripheric component of RNA polymerase III complex. ; GO: 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent, 0005634 nucleus
Probab=71.09 E-value=30 Score=35.60 Aligned_cols=86 Identities=16% Similarity=0.222 Sum_probs=65.8
Q ss_pred CCCCHHHHHHHcccC---HHHHHHHhhhcCeEEECCEEEEeC--------hHHHHHHHHHHHHHHhhCCCCCCCcCHHHH
Q 015967 165 GLYTWNDLVDKVQAS---DDELRSGLWALSAVELGGYWRIVD--------ERYMGTVLAMLLHNSVLNDWSLDALIEDEV 233 (397)
Q Consensus 165 ~~~t~~eL~~~vqaS---~~El~~~l~~l~a~ei~G~~r~Ls--------~~y~~~~L~~il~~~~~~~~~l~~~~~~~~ 233 (397)
+..+|.+|...++.+ +.++.++|.+ +|+-+.|.|.+=| .+.+..+=+.||-.+.... .|...++
T Consensus 283 ~v~~Fs~L~~ll~~~~~~~~~lL~~L~~-~AvLV~G~WV~kS~ll~~~~~~e~~~~aRD~iL~~F~~~~----~v~r~~l 357 (421)
T PF04801_consen 283 RVISFSELRKLLPSNSDTDEELLRALQQ-VAVLVQGNWVVKSELLYPDVPAEQLCRARDYILLLFTKSR----YVKRKEL 357 (421)
T ss_pred CcccHHHHHHHhccccchHHHHHHHHHh-heEEEeeeEEEehhhccCCCcchhhhhhHHHHHHHhcCCC----ceeHHHh
Confidence 467899999888843 5799999987 6777899998866 3477777888887776653 3777766
Q ss_pred HHHhhcCCCcHHHHHHHHHHhCccc
Q 015967 234 VNVLVSDGFPPILASHCLRVYGSKV 258 (397)
Q Consensus 234 ~~~l~~~~~p~~vi~~vl~~~~~~~ 258 (397)
.... ..|..-++.+|..++...
T Consensus 358 ~~~~---~l~~~~~~eiL~~~a~~~ 379 (421)
T PF04801_consen 358 MSAT---KLPPEDVKEILKEIAVLR 379 (421)
T ss_pred hhhc---CCCHHHHHHHHHHHhhcc
Confidence 5433 478899999999999876
No 5
>PF07981 Plasmod_MYXSPDY: Plasmodium repeat_MYXSPDY; InterPro: IPR012598 This repeat is found in two hypothetical Plasmodium proteins.
Probab=62.46 E-value=5.1 Score=21.79 Aligned_cols=15 Identities=27% Similarity=0.589 Sum_probs=11.8
Q ss_pred EecCCCCCCCceEEEecCh
Q 015967 26 AYHPLFGPNDDLILLELDE 44 (397)
Q Consensus 26 ~f~~~~~~~~~ykLLEL~~ 44 (397)
.|+||| ..+|++||+
T Consensus 2 Y~SPdy----tL~~v~Lpd 16 (17)
T PF07981_consen 2 YFSPDY----TLRLVQLPD 16 (17)
T ss_pred ccCCCc----eEEEEecCC
Confidence 467776 899999985
No 6
>KOG4705 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.34 E-value=1e+02 Score=29.95 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=59.8
Q ss_pred CHHHHHHHcccCHHHHHHHhhhcCeEEECCEEEEeCh-HHHHHHHHHHHHHHhhCCCC-CCCcCHHHHHHHh-hcCCCcH
Q 015967 168 TWNDLVDKVQASDDELRSGLWALSAVELGGYWRIVDE-RYMGTVLAMLLHNSVLNDWS-LDALIEDEVVNVL-VSDGFPP 244 (397)
Q Consensus 168 t~~eL~~~vqaS~~El~~~l~~l~a~ei~G~~r~Ls~-~y~~~~L~~il~~~~~~~~~-l~~~~~~~~~~~l-~~~~~p~ 244 (397)
|.++++..-+.-..|=..-|.----+.-||+.++-.| +.++=+|+.+....-+..+. ++.|.+++.+... ......+
T Consensus 53 ~~~~~~~~e~vaf~ekhrSwFvg~sV~snG~ly~~TPvDllfL~LpyLqK~~~~rkf~pld~V~ved~~~~~~~~e~l~p 132 (303)
T KOG4705|consen 53 TNDHLLQIEQVAFSEKHRSWFVGDSVVSNGYLYVCTPVDLLFLVLPYLQKLTWSRKFEPLDYVSVEDFIEHFRVSEVLSP 132 (303)
T ss_pred ecchhhhhhhhhccccccceeecCeeecCCEEEEeccccHHHHHHHHHHHHhhhcccccccceehhhcchhHHHHHHhCc
Confidence 4445444444444455566664444566898776554 23444566665544444443 5667777666552 1111222
Q ss_pred HHHHHHHHHhCccccC-CCCcceeeecChhhHHHHHHHH
Q 015967 245 ILASHCLRVYGSKVDE-NRSKSCLWKLDEKRVCVHFARE 282 (397)
Q Consensus 245 ~vi~~vl~~~~~~~~~-~~g~~~~~~Ld~~kI~r~~a~~ 282 (397)
-++. +|+..+...+. ...+. +|+||+.++..|+.+.
T Consensus 133 gllK-~Lh~V~~vk~~~~~~~K-~Ykln~ektLkwL~rK 169 (303)
T KOG4705|consen 133 GLLK-TLHRVCKVKEPVGSLPK-TYKLNEEKTLKWLLRK 169 (303)
T ss_pred cHHH-HHHHHHhcCCCcccchh-hhhcCHHHHHHHHHHH
Confidence 3333 33444332211 11122 3999999999999854
No 7
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=36.49 E-value=1.4e+02 Score=22.13 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=36.2
Q ss_pred CCCCHHHHHHHcccCHHHHHHHhh---hcCeEEE-CCEEEEeChHHHHH
Q 015967 165 GLYTWNDLVDKVQASDDELRSGLW---ALSAVEL-GGYWRIVDERYMGT 209 (397)
Q Consensus 165 ~~~t~~eL~~~vqaS~~El~~~l~---~l~a~ei-~G~~r~Ls~~y~~~ 209 (397)
..+|.++|.+.+-+|+.-+.+.+. +-+.+++ +|++.++|++.+.+
T Consensus 27 ~~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~~~~~~i~I~d~~~L~~ 75 (76)
T PF13545_consen 27 LPLTQEEIADMLGVSRETVSRILKRLKDEGIIEVKRGKIIILDPERLEE 75 (76)
T ss_dssp EESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEETTEEEESSHHHHHH
T ss_pred ecCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEcCCEEEECCHHHHhc
Confidence 467999999999999988776665 5678876 57999999987765
No 8
>PF13979 SopA_C: SopA-like catalytic domain; PDB: 3NB2_B 3NAW_B 3SQV_B 2QZA_B 3SY2_B 2QYU_A.
Probab=29.30 E-value=88 Score=28.29 Aligned_cols=53 Identities=11% Similarity=0.223 Sum_probs=37.1
Q ss_pred HHHHHHHHHhCccccCCCCcceeeecChhhHHHHHHHHHhhc-----CCCCHHHHHHHHHHhCC
Q 015967 245 ILASHCLRVYGSKVDENRSKSCLWKLDEKRVCVHFAREILSS-----GRRKMESFMEEWQRKIP 303 (397)
Q Consensus 245 ~vi~~vl~~~~~~~~~~~g~~~~~~Ld~~kI~r~~a~~lL~~-----~~~~l~eFl~~Wk~~vP 303 (397)
..+-+|+.+|++..--+. ..|..++.|+||..+|.+ ..+=-.+.++.|++.+=
T Consensus 78 f~La~vf~kySSs~~fGt------E~dSP~~LR~YA~ALl~kA~eLdP~i~s~~~~~~w~~rLl 135 (172)
T PF13979_consen 78 FSLAAVFTKYSSSAIFGT------EYDSPKPLRRYANALLEKAYELDPSIFSSQTFDDWKNRLL 135 (172)
T ss_dssp HHHHHHHHHHCSTTTTTB------SSC--HHHHHHHHHHHHHHHHH-GGGCSHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhHHHHhCC------CCCChHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHc
Confidence 456788888876543222 578999999999999976 22214788999999765
No 9
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=28.56 E-value=80 Score=30.43 Aligned_cols=70 Identities=11% Similarity=0.100 Sum_probs=52.6
Q ss_pred hhhhccCCCCceeEEecCCCCCCCceEEEecChHHHHHhhcC-ceEEecCCCCCeEEecCCCeEEEEEecccceeEecCC
Q 015967 12 EAVLNLQQNSSISIAYHPLFGPNDDLILLELDEKLLSDVLYQ-RVSLRGQPDEDAVLCTQSKTFAIKFVGTSNSVFLIPP 90 (397)
Q Consensus 12 ~~~~~~~~~~~~~l~f~~~~~~~~~ykLLEL~~eLL~~l~~g-~L~iKg~~~d~aVLCT~dkTy~irq~~tSNslLL~~~ 90 (397)
|.+-.+..+...||.|.=. +.-.+-|.+||..-.-.+| .+.--|++...+++ +.+||.+-|+ |.+|+.|-
T Consensus 123 evv~~Ma~~~~~PIIFaLS----NPt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~--~g~~~~~~Q~---NN~~iFPG 193 (254)
T cd00762 123 EVIRAXAEINERPVIFALS----NPTSKAECTAEEAYTATEGRAIFASGSPFHPVEL--NGGTYKPGQG---NNLYIFPG 193 (254)
T ss_pred HHHHHHhhcCCCCEEEECC----CcCCccccCHHHHHhhcCCCEEEEECCCCCCccc--CCceeecccc---cceeeccc
Confidence 4444455666788888755 4556779999988888888 68888998888887 8999988776 55677765
No 10
>PF13565 HTH_32: Homeodomain-like domain
Probab=25.46 E-value=73 Score=23.86 Aligned_cols=31 Identities=23% Similarity=0.531 Sum_probs=27.8
Q ss_pred CcCHHHHHHHHHcCCCCCChhhhhhhhhccC
Q 015967 337 PANPAERFSILFGERPKWEWKDLQPYIRDLK 367 (397)
Q Consensus 337 P~dp~~Rf~~LF~~~~kW~~~Ei~Pyi~~l~ 367 (397)
+.+..+++.+++.-+|.|+..+|..+|+.-.
T Consensus 32 ~~e~~~~i~~~~~~~p~wt~~~i~~~L~~~~ 62 (77)
T PF13565_consen 32 DPEQRERIIALIEEHPRWTPREIAEYLEEEF 62 (77)
T ss_pred cHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 6777899999999999999999999998743
No 11
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=23.74 E-value=5.6e+02 Score=27.93 Aligned_cols=88 Identities=10% Similarity=0.029 Sum_probs=68.2
Q ss_pred CCCCHHHHHHHcccCHHHHHHHhhhcCeEEECCEEEEeChHHHHHHHHHHHHHHhh--CCCCCC-CcCHHHHHHHhhcCC
Q 015967 165 GLYTWNDLVDKVQASDDELRSGLWALSAVELGGYWRIVDERYMGTVLAMLLHNSVL--NDWSLD-ALIEDEVVNVLVSDG 241 (397)
Q Consensus 165 ~~~t~~eL~~~vqaS~~El~~~l~~l~a~ei~G~~r~Ls~~y~~~~L~~il~~~~~--~~~~l~-~~~~~~~~~~l~~~~ 241 (397)
...++.++....+.+.+++...+..-..+.++++ +++.++..++.+.++..+.. +..++. .++.+++...+. ..
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~h~~~p~~~g~~~~~l~~~~~-~~ 452 (614)
T PRK10512 376 GAVNLADFAWARQLNGEGMRALLQQPGYIQAGDS--LLSAPVAARWQRKLLDTLATYHEQHRDEPGPGRERLRRMAL-PM 452 (614)
T ss_pred cCCCHHHHHHHhcCCHHHHHHHhccCCeEEEccE--EECHHHHHHHHHHHHHHHHHHHHHCCcccCCCHHHHHhhcc-cC
Confidence 5679999999999999999998876667777754 57999999999998888864 233443 488888877654 34
Q ss_pred CcHHHHHHHHHHhC
Q 015967 242 FPPILASHCLRVYG 255 (397)
Q Consensus 242 ~p~~vi~~vl~~~~ 255 (397)
++..++.++|....
T Consensus 453 ~~~~~~~~~l~~l~ 466 (614)
T PRK10512 453 EDEALVLLLIEKMR 466 (614)
T ss_pred CCHHHHHHHHHHHH
Confidence 78899999998774
No 12
>smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein.
Probab=21.29 E-value=3.3e+02 Score=19.71 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=46.8
Q ss_pred CCHHHHHHHcccCHHHHHHHhhhcCeEEECCEEEEeChHHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHhhcCCC-cHH
Q 015967 167 YTWNDLVDKVQASDDELRSGLWALSAVELGGYWRIVDERYMGTVLAMLLHNSVLNDWSLDALIEDEVVNVLVSDGF-PPI 245 (397)
Q Consensus 167 ~t~~eL~~~vqaS~~El~~~l~~l~a~ei~G~~r~Ls~~y~~~~L~~il~~~~~~~~~l~~~~~~~~~~~l~~~~~-p~~ 245 (397)
+|+++|...+-+|...+...+.+..+.....+ +. ..-+..++..+..+ .++++++...+ || .+.
T Consensus 2 ~~~~~la~~~~~s~~~l~~~f~~~~~~s~~~~---~~----~~r~~~a~~~l~~~-----~~~~~~ia~~~---g~~s~~ 66 (84)
T smart00342 2 LTLEDLAEALGMSPRHLQRLFKKETGTTPKQY---LR----DRRLERARRLLRDT-----DLSVTEIALRV---GFSSQS 66 (84)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHhCcCHHHH---HH----HHHHHHHHHHHHcC-----CCCHHHHHHHh---CCCChH
Confidence 57899999999999999999998754432111 11 12244445555444 56777887666 56 665
Q ss_pred HHHHHH-HHhCc
Q 015967 246 LASHCL-RVYGS 256 (397)
Q Consensus 246 vi~~vl-~~~~~ 256 (397)
-+...+ +.+|.
T Consensus 67 ~f~r~Fk~~~g~ 78 (84)
T smart00342 67 YFSRAFKKLFGV 78 (84)
T ss_pred HHHHHHHHHHCc
Confidence 555555 44553
No 13
>PF14394 DUF4423: Domain of unknown function (DUF4423)
Probab=20.72 E-value=3.2e+02 Score=24.44 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=26.8
Q ss_pred CHHHHHHHc--ccCHHHHHHHhh---hcCeEEEC--CEEEEeCh
Q 015967 168 TWNDLVDKV--QASDDELRSGLW---ALSAVELG--GYWRIVDE 204 (397)
Q Consensus 168 t~~eL~~~v--qaS~~El~~~l~---~l~a~ei~--G~~r~Ls~ 204 (397)
+...|...+ ++|.+|..++|. +++.++-+ |+|..-+.
T Consensus 41 d~~~iak~l~p~is~~ev~~sL~~L~~~gli~k~~~g~y~~t~~ 84 (171)
T PF14394_consen 41 DPEWIAKRLRPKISAEEVRDSLEFLEKLGLIKKDGDGKYVQTDK 84 (171)
T ss_pred CHHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEECCCCcEEEecc
Confidence 466777777 888888777665 78888875 46777553
No 14
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.42 E-value=1.3e+02 Score=25.48 Aligned_cols=31 Identities=16% Similarity=0.267 Sum_probs=27.7
Q ss_pred hhcCeEEECCEEEEeChHHHHHHHHHHHHHH
Q 015967 188 WALSAVELGGYWRIVDERYMGTVLAMLLHNS 218 (397)
Q Consensus 188 ~~l~a~ei~G~~r~Ls~~y~~~~L~~il~~~ 218 (397)
...+++.|-|.-|++.|++..+++..|+-..
T Consensus 22 eRyagiki~gkPrii~p~~aD~~~~~ilGe~ 52 (125)
T COG1844 22 ERYAGIKIRGKPRIIPPELADEILSSILGEV 52 (125)
T ss_pred HHhcCceeecCCcccChhhHHHHHHHHHHHH
Confidence 3578999999999999999999999998766
No 15
>PRK13239 alkylmercury lyase; Provisional
Probab=20.36 E-value=1.5e+02 Score=27.70 Aligned_cols=35 Identities=17% Similarity=0.107 Sum_probs=31.6
Q ss_pred cCCCCCHHHHHHHcccCHHHHHHHhhhcCeEEECC
Q 015967 163 KAGLYTWNDLVDKVQASDDELRSGLWALSAVELGG 197 (397)
Q Consensus 163 ~~~~~t~~eL~~~vqaS~~El~~~l~~l~a~ei~G 197 (397)
.++..|..+|....+.|.+++.+.|.++..+++|+
T Consensus 33 ~G~pvt~~~lA~~~~~~~~~v~~~L~~l~~~~~d~ 67 (206)
T PRK13239 33 KGRPVSVTTLAAALGWPVEEVEAVLEAMPDTEYDE 67 (206)
T ss_pred cCCCCCHHHHHHHhCCCHHHHHHHHHhCCCeEECC
Confidence 35778999999999999999999999999888875
Done!