Query 015967
Match_columns 397
No_of_seqs 126 out of 223
Neff 7.1
Searched_HMMs 29240
Date Mon Mar 25 05:38:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015967.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015967hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v9v_A Selenocysteine-specific 55.4 73 0.0025 25.4 9.2 88 167-255 18-114 (135)
2 4a69_C Nuclear receptor corepr 52.8 4.3 0.00015 31.8 1.0 55 325-381 18-72 (94)
3 2pjp_A Selenocysteine-specific 33.4 1.8E+02 0.006 22.9 8.4 82 165-254 19-104 (121)
4 1t6s_A Conserved hypothetical 29.0 93 0.0032 26.6 5.7 50 165-214 21-83 (162)
5 1lva_A Selenocysteine-specific 28.0 2.7E+02 0.0093 25.0 9.3 80 166-254 157-240 (258)
6 1lva_A Selenocysteine-specific 26.6 3.5E+02 0.012 24.3 9.7 86 168-254 19-113 (258)
7 3khe_A Calmodulin-like domain 25.9 2E+02 0.0067 23.4 7.4 117 177-304 56-189 (191)
8 1mby_A SAK, serine/threonine k 24.9 48 0.0017 25.4 2.8 29 322-350 48-76 (88)
9 3f2g_A Alkylmercury lyase; MER 22.7 70 0.0024 28.8 4.0 34 163-196 33-66 (220)
10 2bl0_B Myosin regulatory light 21.2 2.7E+02 0.0094 21.1 9.0 18 287-304 127-144 (145)
11 2og0_A Excisionase; protein-DN 21.1 1.2E+02 0.0041 20.7 4.0 36 167-202 3-44 (52)
12 2z99_A Putative uncharacterize 20.6 1.6E+02 0.0055 26.4 5.9 52 165-216 29-91 (219)
13 2kfs_A Conserved hypothetical 20.1 1E+02 0.0036 25.9 4.2 73 165-251 30-105 (148)
No 1
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=55.45 E-value=73 Score=25.38 Aligned_cols=88 Identities=14% Similarity=0.170 Sum_probs=64.8
Q ss_pred CCHHHHHHHcccCHHHHHHHhhhc----CeEEEC--CEEEEeChHHHHHHHHHHHHHHhh--CCCCCC-CcCHHHHHHHh
Q 015967 167 YTWNDLVDKVQASDDELRSGLWAL----SAVELG--GYWRIVDERYMGTVLAMLLHNSVL--NDWSLD-ALIEDEVVNVL 237 (397)
Q Consensus 167 ~t~~eL~~~vqaS~~El~~~l~~l----~a~ei~--G~~r~Ls~~y~~~~L~~il~~~~~--~~~~l~-~~~~~~~~~~l 237 (397)
+..++|......|..++...+..+ .++.++ +..+.++.++..++-..|+..+.+ ...++. .++.+++...+
T Consensus 18 ~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~ 97 (135)
T 2v9v_A 18 LDWQEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLYAISTERYQAWWQAVTRALEEFHSRYPLRPGLAREELRSRY 97 (135)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEEecCCCeEEecHHHHHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHHh
Confidence 334888888999999888777653 466665 444468999999999999998887 223333 38889998876
Q ss_pred hcCCCcHHHHHHHHHHhC
Q 015967 238 VSDGFPPILASHCLRVYG 255 (397)
Q Consensus 238 ~~~~~p~~vi~~vl~~~~ 255 (397)
.+ .+++.++.+++...-
T Consensus 98 ~~-~~~~~~~~~ll~~l~ 114 (135)
T 2v9v_A 98 FS-RLPARVYQALLEEWS 114 (135)
T ss_dssp CT-TSCHHHHHHHHHHHH
T ss_pred cc-cCCHHHHHHHHHHHH
Confidence 53 368889999987653
No 2
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=52.76 E-value=4.3 Score=31.78 Aligned_cols=55 Identities=9% Similarity=0.185 Sum_probs=42.0
Q ss_pred cceEEEecCCCCCcCHHHHHHHHHcCCCCCChhhhhhhhhccCCCCCChhHHHHhhh
Q 015967 325 DLWIRAFSVSSLPANPAERFSILFGERPKWEWKDLQPYIRDLKVPGQSLEGLLLKYT 381 (397)
Q Consensus 325 ~~~I~y~~~~~LP~dp~~Rf~~LF~~~~kW~~~Ei~Pyi~~l~~~~~~~d~lllKya 381 (397)
...+.|++.+.|-.||.+-++.. +....|+.+|..-|.+.+..-|+.+-.+ .++-
T Consensus 18 ~~~~~f~d~n~lv~dp~~~~~~r-~~~~~WT~eE~~~F~~~~~~~gK~F~~I-a~~l 72 (94)
T 4a69_C 18 QQRIKFINMNGLMADPMKVYKDR-QVMNMWSEQEKETFREKFMQHPKNFGLI-ASFL 72 (94)
T ss_dssp ----CCBCTTSBBSCHHHHHHHH-HHTCCCCHHHHHHHHHHHHHSTTCHHHH-HHTC
T ss_pred HHhheecccCCcccCHHHHHhcc-CCCCCCCHHHHHHHHHHHHHcCCCHHHH-HHHc
Confidence 34678999999999998766554 7788999999999999999888887554 4443
No 3
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=33.42 E-value=1.8e+02 Score=22.94 Aligned_cols=82 Identities=11% Similarity=0.042 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHcccCHHHHHHH---hhhcC-eEEECCEEEEeChHHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHhhcC
Q 015967 165 GLYTWNDLVDKVQASDDELRSG---LWALS-AVELGGYWRIVDERYMGTVLAMLLHNSVLNDWSLDALIEDEVVNVLVSD 240 (397)
Q Consensus 165 ~~~t~~eL~~~vqaS~~El~~~---l~~l~-a~ei~G~~r~Ls~~y~~~~L~~il~~~~~~~~~l~~~~~~~~~~~l~~~ 240 (397)
.+.+..+|.+....++.++.+. +.+.+ ++.+.+..+. .++.+.++...|...+.+++ .+++.+..+.+
T Consensus 19 ~p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i~~~~~~-~~~~~~~~~~~l~~~~~~~~----~it~ae~Rd~l--- 90 (121)
T 2pjp_A 19 EPWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAIVKDRYY-RNDRIVEFANMIRDLDQECG----STCAADFRDRL--- 90 (121)
T ss_dssp SCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEETTEEE-EHHHHHHHHHHHHHHHHHHS----SEEHHHHHHHH---
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEecCCceE-CHHHHHHHHHHHHHHHHHCC----CccHHHHHHHH---
Confidence 3457889999999998866554 44555 4555443333 68889999999999888875 68899998888
Q ss_pred CCcHHHHHHHHHHh
Q 015967 241 GFPPILASHCLRVY 254 (397)
Q Consensus 241 ~~p~~vi~~vl~~~ 254 (397)
|.++-..-.+|..|
T Consensus 91 g~sRK~ai~lLE~~ 104 (121)
T 2pjp_A 91 GVGRKLAIQILEYF 104 (121)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHH
Confidence 46776444555444
No 4
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=28.96 E-value=93 Score=26.56 Aligned_cols=50 Identities=16% Similarity=0.211 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHcc--cCHHHHHHHhhhc--------Ce---EEECCEEEEeChHHHHHHHHHH
Q 015967 165 GLYTWNDLVDKVQ--ASDDELRSGLWAL--------SA---VELGGYWRIVDERYMGTVLAML 214 (397)
Q Consensus 165 ~~~t~~eL~~~vq--aS~~El~~~l~~l--------~a---~ei~G~~r~Ls~~y~~~~L~~i 214 (397)
.+.|.++|...+. +|..++.++|.++ .+ ++++|.||+....=....+..+
T Consensus 21 ~pvs~~~La~~~~~~~~~~~v~~~l~~L~~~y~~~~rg~~l~~v~~gy~l~t~~~~~~~v~~~ 83 (162)
T 1t6s_A 21 EPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVRQL 83 (162)
T ss_dssp SCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHHHH
T ss_pred CCCCHHHHHHHhCcCCCHHHHHHHHHHHHHHhhhCCCCEEEEEECCEEEEEEcHHHHHHHHHH
Confidence 5679999999999 9999888887764 23 4668888887654444444443
No 5
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=28.02 E-value=2.7e+02 Score=25.02 Aligned_cols=80 Identities=11% Similarity=0.091 Sum_probs=57.7
Q ss_pred CCCHHHHHHHcccCHHHHHHH---hhhcC-eEEECCEEEEeChHHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHhhcCC
Q 015967 166 LYTWNDLVDKVQASDDELRSG---LWALS-AVELGGYWRIVDERYMGTVLAMLLHNSVLNDWSLDALIEDEVVNVLVSDG 241 (397)
Q Consensus 166 ~~t~~eL~~~vqaS~~El~~~---l~~l~-a~ei~G~~r~Ls~~y~~~~L~~il~~~~~~~~~l~~~~~~~~~~~l~~~~ 241 (397)
+.+..+|.+.....+.++.+. |.+.+ ++.|++-.+. +++.+.++...|...+ .++ .|++.+..+.+ +
T Consensus 157 pp~~~dl~~~l~~~~~~~~~~l~~l~~~g~lv~l~~~~~~-~~~~~~~~~~~l~~~~-~~~----~it~a~~Rd~l---g 227 (258)
T 1lva_A 157 PPSFKEVAGSFNLDPSELEELLHYLVREGVLVKINDEFYW-HRQALGEAREVIKNLA-STG----PFGLAEARDAL---G 227 (258)
T ss_dssp CCBHHHHHHHTTCCHHHHHHHHHHHHHTTSEEESSSSBEE-EHHHHHHHHHHHHHHH-TTS----CBCHHHHHHHH---T
T ss_pred CCCHHHHHhHhCCCHHHHHHHHHHHHHCCCEEEecCCeEE-cHHHHHHHHHHHHHHH-hcC----CcCHHHHHHHh---C
Confidence 447889999999988866554 44555 5566665444 7888999999999888 764 68899888888 4
Q ss_pred CcHHHHHHHHHHh
Q 015967 242 FPPILASHCLRVY 254 (397)
Q Consensus 242 ~p~~vi~~vl~~~ 254 (397)
.++-..-.+|..|
T Consensus 228 ~SRK~aIplLE~~ 240 (258)
T 1lva_A 228 SSRKYVLPLLEYL 240 (258)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 6775555665544
No 6
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=26.61 E-value=3.5e+02 Score=24.27 Aligned_cols=86 Identities=14% Similarity=0.173 Sum_probs=63.2
Q ss_pred CHHHHHHHcccCHHHHHHHhhhc----CeEEEC--CEEEEeChHHHHHHHHHHHHHHhh--CCCCCC-CcCHHHHHHHhh
Q 015967 168 TWNDLVDKVQASDDELRSGLWAL----SAVELG--GYWRIVDERYMGTVLAMLLHNSVL--NDWSLD-ALIEDEVVNVLV 238 (397)
Q Consensus 168 t~~eL~~~vqaS~~El~~~l~~l----~a~ei~--G~~r~Ls~~y~~~~L~~il~~~~~--~~~~l~-~~~~~~~~~~l~ 238 (397)
..++|......|..++...+..+ .++.++ +..+.+++++..++...|+..+.. ...++. .++.+++...+.
T Consensus 19 ~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~H~~~P~~~G~~~~~L~~~~~ 98 (258)
T 1lva_A 19 DWQEAATRASLSLEETRKLLQSMAAAGQVTLLRVENDLYAISTERYQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYF 98 (258)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHC
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHhCCCEEEeccCCccEEEcHHHHHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHhcc
Confidence 34888888899999988776653 456665 444478999999999999888876 222332 388888888774
Q ss_pred cCCCcHHHHHHHHHHh
Q 015967 239 SDGFPPILASHCLRVY 254 (397)
Q Consensus 239 ~~~~p~~vi~~vl~~~ 254 (397)
+ ..|+.++.+++...
T Consensus 99 ~-~~~~~l~~~ll~~l 113 (258)
T 1lva_A 99 S-RLPARVYQALLEEW 113 (258)
T ss_dssp T-TSCHHHHHHHHHHH
T ss_pred c-cCCHHHHHHHHHHH
Confidence 2 36888889998765
No 7
>3khe_A Calmodulin-like domain protein kinase isoform 3; calcium dependent kinase, structural genomics, structural GE consortium, SGC, ATP-binding; 1.95A {Toxoplasma gondii}
Probab=25.87 E-value=2e+02 Score=23.41 Aligned_cols=117 Identities=17% Similarity=0.178 Sum_probs=61.4
Q ss_pred ccCHHHHHHHhhhcCeEEECCEEEEeChHHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHhhc--CCCcHHHHHHHHHHh
Q 015967 177 QASDDELRSGLWALSAVELGGYWRIVDERYMGTVLAMLLHNSVLNDWSLDALIEDEVVNVLVS--DGFPPILASHCLRVY 254 (397)
Q Consensus 177 qaS~~El~~~l~~l~a~ei~G~~r~Ls~~y~~~~L~~il~~~~~~~~~l~~~~~~~~~~~l~~--~~~p~~vi~~vl~~~ 254 (397)
..|..||..++..+.... +..+..+........+..++..+..++= ..|+.++....+.. ...+...+..+++.|
T Consensus 56 ~i~~~e~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~d~~--g~i~~~ef~~~~~~~~~~~~~~~~~~~F~~~ 132 (191)
T 3khe_A 56 QLDRKELIEGYRKLMQWK-GDTVSDLDSSQIEAEVDHILQSVDFDRN--GYIEYSEFVTVCMDKQLLLSRERLLAAFQQF 132 (191)
T ss_dssp EECHHHHHHHHHHHHC------CCHHHHHHHHHHHHHHHHHTCTTCS--SSEEHHHHHHHHSCHHHHCCHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHhhc-ccccccccchhhHHHHHHHHHHhCCCCC--CcCCHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 356777777777652211 1111112233444455556655554331 24888888776632 124556778888877
Q ss_pred CccccCCCCcceeeecChhhHHHHH---------HHHHhhc------CCCCHHHHHHHHHHhCCC
Q 015967 255 GSKVDENRSKSCLWKLDEKRVCVHF---------AREILSS------GRRKMESFMEEWQRKIPE 304 (397)
Q Consensus 255 ~~~~~~~~g~~~~~~Ld~~kI~r~~---------a~~lL~~------~~~~l~eFl~~Wk~~vP~ 304 (397)
-.. +.| .|+...+.+.+ ...+++. |.++++||+..|+..++.
T Consensus 133 D~d---~~G-----~I~~~E~~~~l~~~~~~~~~~~~~~~~~D~~~dg~i~~~eF~~~~~~~~~~ 189 (191)
T 3khe_A 133 DSD---GSG-----KITNEELGRLFGVTEVDDETWHQVLQECDKNNDGEVDFEEFVEMMQKICDV 189 (191)
T ss_dssp CTT---CSS-----EECHHHHHHHTTSSCCCHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHHHTC
T ss_pred CCC---CcC-----cCCHHHHHHHHccCCCCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHhcc
Confidence 422 111 13333333322 2223322 579999999999987653
No 8
>1mby_A SAK, serine/threonine kinase; POLO domain, strand exchange, transferase; 2.00A {Mus musculus} SCOP: d.223.1.1
Probab=24.90 E-value=48 Score=25.44 Aligned_cols=29 Identities=14% Similarity=-0.010 Sum_probs=23.2
Q ss_pred cCCcceEEEecCCCCCcCHHHHHHHHHcC
Q 015967 322 LGVDLWIRAFSVSSLPANPAERFSILFGE 350 (397)
Q Consensus 322 ~~~~~~I~y~~~~~LP~dp~~Rf~~LF~~ 350 (397)
.+.....+|-..++||.-+++|++.|=++
T Consensus 48 ~~~G~~t~y~~~d~LP~~vrekL~~lp~I 76 (88)
T 1mby_A 48 SPDGQTTRYGENEKLPEYIKQKLQLLSSI 76 (88)
T ss_dssp CTTSCEEEEETTSCCCHHHHHHHTTTCCE
T ss_pred CCCCceEEcCcCCCccHHHHHHHhhhHHH
Confidence 35566788888889999999999887443
No 9
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=22.71 E-value=70 Score=28.80 Aligned_cols=34 Identities=12% Similarity=0.078 Sum_probs=31.4
Q ss_pred cCCCCCHHHHHHHcccCHHHHHHHhhhcCeEEEC
Q 015967 163 KAGLYTWNDLVDKVQASDDELRSGLWALSAVELG 196 (397)
Q Consensus 163 ~~~~~t~~eL~~~vqaS~~El~~~l~~l~a~ei~ 196 (397)
.++..+.++|...++.|.+|+.+.|.++.++++|
T Consensus 33 ~Grpv~~~~LA~~~g~~~~~v~~~L~~l~~~~~D 66 (220)
T 3f2g_A 33 KGRPVSRTTLAGILDWPAERVAAVLEQATSTEYD 66 (220)
T ss_dssp TTSCBCHHHHHHHHTCCHHHHHHHHHHCTTCEEC
T ss_pred cCCCCCHHHHHHHhCcCHHHHHHHHHhCCcEEEC
Confidence 3577899999999999999999999999999987
No 10
>2bl0_B Myosin regulatory light chain; muscle protein, slime mould, EF-hand; 1.75A {Physarum polycephalum}
Probab=21.21 E-value=2.7e+02 Score=21.09 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.5
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 015967 287 GRRKMESFMEEWQRKIPE 304 (397)
Q Consensus 287 ~~~~l~eFl~~Wk~~vP~ 304 (397)
|.++++||+..+.+..|+
T Consensus 127 g~i~~~eF~~~~~~~~~~ 144 (145)
T 2bl0_B 127 GAINYESFVDMLVTGYPL 144 (145)
T ss_dssp SEEEHHHHHHHHHHSSCC
T ss_pred CcEeHHHHHHHHHhcCCC
Confidence 568999999999988776
No 11
>2og0_A Excisionase; protein-DNA complex, DNA architectural protein, 'winged'HELI protein, phage excision; 1.90A {Enterobacteria phage lambda} SCOP: a.6.1.7 PDB: 1lx8_A 1rh6_A 2ief_A
Probab=21.08 E-value=1.2e+02 Score=20.73 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=29.5
Q ss_pred CCHHHHHHHc--ccCHHHHHHHhhh--c--CeEEECCEEEEe
Q 015967 167 YTWNDLVDKV--QASDDELRSGLWA--L--SAVELGGYWRIV 202 (397)
Q Consensus 167 ~t~~eL~~~v--qaS~~El~~~l~~--l--~a~ei~G~~r~L 202 (397)
+|++|..+.. +.|+.=+..-.++ + .++.+++.||+-
T Consensus 3 ltl~EwA~~~~~~~s~~Tl~r~ar~G~I~Pp~~KvGr~wrv~ 44 (52)
T 2og0_A 3 LTLQEWNARQRRPRSLETVRRWVRESRIFPPPVKDGREYLFH 44 (52)
T ss_dssp EEHHHHHHTSSSCCCHHHHHHHHHTTCEESCCEEETTEEEEE
T ss_pred eeHHHHHHHhcCCCCHHHHHHHHHCCCCCCcccccCCEEEEc
Confidence 4777777777 7899999888885 6 679999999984
No 12
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=20.62 E-value=1.6e+02 Score=26.41 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=37.8
Q ss_pred CCCCHHHHHHHcccCHHHHHHHhhhc--------Ce---EEECCEEEEeChHHHHHHHHHHHH
Q 015967 165 GLYTWNDLVDKVQASDDELRSGLWAL--------SA---VELGGYWRIVDERYMGTVLAMLLH 216 (397)
Q Consensus 165 ~~~t~~eL~~~vqaS~~El~~~l~~l--------~a---~ei~G~~r~Ls~~y~~~~L~~il~ 216 (397)
.+.|.++|...+.++..++.++|.++ ++ ++++|.||+....=....+..++.
T Consensus 29 epvs~~~La~~l~~~~~~v~~~l~~L~~~y~~~~rGiel~~v~~gy~l~T~~e~~~~v~~~~~ 91 (219)
T 2z99_A 29 TPVTADALAAATEQPVYRVAAKLQLMADELTGRDSGIDLRHTSEGWRMYTRARFAPYVEKLLL 91 (219)
T ss_dssp SCBCHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCSEEEEEETTEEEEEECGGGHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHhhCCCCEEEEEECCEEEEEEcHHHHHHHHHHhc
Confidence 45789999999999999888887654 24 466888988776555555555543
No 13
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=20.12 E-value=1e+02 Score=25.93 Aligned_cols=73 Identities=12% Similarity=0.132 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHcccCHHHHHHHhh--hcCeEEECCEEEEeChHHHHHHHHHHHHHHhhCCCCCCCcCHHHHHHHhhcCCC
Q 015967 165 GLYTWNDLVDKVQASDDELRSGLW--ALSAVELGGYWRIVDERYMGTVLAMLLHNSVLNDWSLDALIEDEVVNVLVSDGF 242 (397)
Q Consensus 165 ~~~t~~eL~~~vqaS~~El~~~l~--~l~a~ei~G~~r~Ls~~y~~~~L~~il~~~~~~~~~l~~~~~~~~~~~l~~~~~ 242 (397)
..+|..|+.+....|..-+++.++ ++.++.++|.||+-...+ ..++--+.. +..+...|.+.+|
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~LIr~G~L~AVr~Gr~~rVP~~f~------------~~~g~vv~~--L~G~l~vL~D~G~ 95 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQQLREGHLVAVRRAGGVVIPQVFF------------TNSGQVVKS--LPGLLTILHDGGY 95 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHTTSCCCEEETTEEEEEGGGB------------CTTSCBCTT--HHHHHHHHHHTTC
T ss_pred ceEcHHHHHHHhCCCHHHHHHHHHCCCceEEEECCEEEecHHHh------------ccCCCccCC--CccHHHHHhcCCC
Confidence 678999999999999999999999 588999999999855433 111211122 3456677777777
Q ss_pred cH-HHHHHHH
Q 015967 243 PP-ILASHCL 251 (397)
Q Consensus 243 p~-~vi~~vl 251 (397)
.+ +++.+++
T Consensus 96 ~d~e~~~wLf 105 (148)
T 2kfs_A 96 RDTEIMRWLF 105 (148)
T ss_dssp CHHHHHHHHT
T ss_pred CHHHHHHHhc
Confidence 65 4444443
Done!