Query 015967
Match_columns 397
No_of_seqs 126 out of 223
Neff 7.1
Searched_HMMs 13730
Date Mon Mar 25 05:38:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015967.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015967hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t6sa1 a.4.5.60 (A:1-85) Segr 53.4 14 0.001 26.1 5.9 51 164-214 20-83 (85)
2 d2gaua1 a.4.5.4 (A:152-232) Tr 40.7 44 0.0032 22.6 6.9 48 165-212 28-79 (81)
3 d2bgca1 a.4.5.4 (A:138-237) Li 26.7 77 0.0056 22.7 6.4 49 166-214 31-84 (100)
4 d3e5ua1 a.4.5.4 (A:148-227) Ch 24.4 49 0.0035 22.4 4.7 46 165-210 29-78 (80)
5 d2gcxa1 b.34.1.2 (A:1-75) Ferr 20.2 62 0.0045 22.0 4.4 52 32-83 4-67 (75)
6 d2zcwa1 a.4.5.4 (A:118-199) Tr 19.5 1.2E+02 0.0087 20.3 6.0 47 165-211 28-78 (82)
7 d1e42a2 d.105.1.1 (A:825-937) 19.3 23 0.0017 26.6 2.0 17 287-304 6-22 (113)
8 d1mbya_ d.223.1.1 (A:) Serine/ 17.7 41 0.003 23.3 2.8 26 322-347 41-66 (75)
9 d2iw5b1 a.4.1.3 (B:376-440) RE 17.0 15 0.0011 24.5 0.2 34 349-382 3-48 (65)
10 d1omra_ a.39.1.5 (A:) Recoveri 15.5 1.9E+02 0.013 22.3 7.2 28 276-304 147-180 (201)
No 1
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=53.35 E-value=14 Score=26.14 Aligned_cols=51 Identities=16% Similarity=0.220 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHcc--cCHHHHHHHhhhc--------CeE---EECCEEEEeChHHHHHHHHHH
Q 015967 164 AGLYTWNDLVDKVQ--ASDDELRSGLWAL--------SAV---ELGGYWRIVDERYMGTVLAML 214 (397)
Q Consensus 164 ~~~~t~~eL~~~vq--aS~~El~~~l~~l--------~a~---ei~G~~r~Ls~~y~~~~L~~i 214 (397)
.++.|.++|...++ .|..++.+++.++ +++ +++|.||+....=....+..+
T Consensus 20 ~~Pls~~~L~~~l~~~~~~~~i~~~l~~L~~~y~~~~~g~el~~~~~gy~~~tk~e~~~~v~kl 83 (85)
T d1t6sa1 20 EEPVNLQTLSQITAHKFTPSELQEAVDELNRDYEATGRTFRIHAIAGGYRFLTEPEFADLVRQL 83 (85)
T ss_dssp SSCBCHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHTCSEEEEEETTEEEEEECGGGHHHHHHH
T ss_pred CCCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHhcCCCcEEEEEECCEEEEEEhHHHHHHHHHH
Confidence 36789999999885 7888888887441 344 567888886654444444433
No 2
>d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]}
Probab=40.66 E-value=44 Score=22.55 Aligned_cols=48 Identities=13% Similarity=0.075 Sum_probs=38.9
Q ss_pred CCCCHHHHHHHcccCHHHHHHHhh---hcCeEEE-CCEEEEeChHHHHHHHH
Q 015967 165 GLYTWNDLVDKVQASDDELRSGLW---ALSAVEL-GGYWRIVDERYMGTVLA 212 (397)
Q Consensus 165 ~~~t~~eL~~~vqaS~~El~~~l~---~l~a~ei-~G~~r~Ls~~y~~~~L~ 212 (397)
-.+|-+||.+.+-+|++-+-..|. +.+.+++ .|.+.++|++.+.++-.
T Consensus 28 ~~lt~~eLA~~~G~sretvsr~L~~l~~~glI~~~~~~i~I~d~~~L~~~a~ 79 (81)
T d2gaua1 28 IYLSREELATLSNMTVSNAIRTLSTFVSERMLALDGKRIKIIDCDRLQKTAR 79 (81)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHHH
T ss_pred ecCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCEEEEcCHHHHHHHHh
Confidence 467999999999999998776665 5677876 47899999998887643
No 3
>d2bgca1 a.4.5.4 (A:138-237) Listeriolysin regulatory protein PrfA, C-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]}
Probab=26.66 E-value=77 Score=22.72 Aligned_cols=49 Identities=12% Similarity=0.089 Sum_probs=39.4
Q ss_pred CCCHHHHHHHcccC-HH---HHHHHhhhcCeEEE-CCEEEEeChHHHHHHHHHH
Q 015967 166 LYTWNDLVDKVQAS-DD---ELRSGLWALSAVEL-GGYWRIVDERYMGTVLAML 214 (397)
Q Consensus 166 ~~t~~eL~~~vqaS-~~---El~~~l~~l~a~ei-~G~~r~Ls~~y~~~~L~~i 214 (397)
.+|-+||.+.+-.| ++ -..+.|.+-+.+++ .|++.++|++.+.++-..+
T Consensus 31 ~lTqeeLA~~lG~s~ReTVsR~L~~L~~~GlI~~~~~~i~I~D~~~L~~~A~~~ 84 (100)
T d2bgca1 31 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYAPKL 84 (100)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHCHHH
T ss_pred ccCHHHHHHHhCCchHHHHHHHHHHHHHCCCEEEcCCEEEEeCHHHHHHHhccc
Confidence 57999999999976 54 56777778888877 5799999999998875543
No 4
>d3e5ua1 a.4.5.4 (A:148-227) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]}
Probab=24.40 E-value=49 Score=22.36 Aligned_cols=46 Identities=2% Similarity=-0.126 Sum_probs=34.2
Q ss_pred CCCCHHHHHHHcccCHHHHHHHhh---hcCeEEEC-CEEEEeChHHHHHH
Q 015967 165 GLYTWNDLVDKVQASDDELRSGLW---ALSAVELG-GYWRIVDERYMGTV 210 (397)
Q Consensus 165 ~~~t~~eL~~~vqaS~~El~~~l~---~l~a~ei~-G~~r~Ls~~y~~~~ 210 (397)
-.+|.++|.+.+-+|++-+-..|. +-+.++++ |++.+.|.+.+.++
T Consensus 29 ~~lt~~elA~~~g~sretvsr~l~~l~~~glI~~~~~~i~I~d~~~L~~~ 78 (80)
T d3e5ua1 29 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDKKKNKIIVYNLGELKHL 78 (80)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC----CEESCHHHHHHH
T ss_pred eCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEecCCEEEEcCHHHHHHH
Confidence 467999999999999987766555 56788876 67888898877654
No 5
>d2gcxa1 b.34.1.2 (A:1-75) Ferrous iron transport protein A, FeoA {Klebsiella pneumoniae [TaxId: 573]}
Probab=20.23 E-value=62 Score=22.03 Aligned_cols=52 Identities=6% Similarity=0.069 Sum_probs=35.8
Q ss_pred CCCCceEEEecC----hHHHHHhhc-C-----ceEE--ecCCCCCeEEecCCCeEEEEEecccc
Q 015967 32 GPNDDLILLELD----EKLLSDVLY-Q-----RVSL--RGQPDEDAVLCTQSKTFAIKFVGTSN 83 (397)
Q Consensus 32 ~~~~~ykLLEL~----~eLL~~l~~-g-----~L~i--Kg~~~d~aVLCT~dkTy~irq~~tSN 83 (397)
.|.+.|++.-++ +++-+.|.+ | .+.+ ++.-++..++--.+..++||..+-++
T Consensus 4 ~pg~~~~I~g~~~~~~~~~~~RL~~mGl~pG~~V~v~~~ap~g~P~~i~v~~~~iaLr~~~A~~ 67 (75)
T d2gcxa1 4 TPDSAWKITGFSRDISPAYRQKLLSLGMLPGSSFHVVRVAPLGDPVHIETRRVSLVLRKKDLAL 67 (75)
T ss_dssp CTTSEEEEECCCSSCCHHHHHHHTTTTCCSSEEEEECCCCSSCCEEEEEETTEEEEEETTTTTT
T ss_pred CCCCcEEEEEecccCCHHHHHHHHHcCCCCCCEEEEEEECCCCCCEEEEECCEEEEECHHHhCe
Confidence 456788888554 556666655 3 3444 35557789999999999999876554
No 6
>d2zcwa1 a.4.5.4 (A:118-199) Transcriptional regulator TTHA1359, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=19.49 E-value=1.2e+02 Score=20.26 Aligned_cols=47 Identities=11% Similarity=0.053 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHcccCHHHHHHHhh---hcCeEEE-CCEEEEeChHHHHHHH
Q 015967 165 GLYTWNDLVDKVQASDDELRSGLW---ALSAVEL-GGYWRIVDERYMGTVL 211 (397)
Q Consensus 165 ~~~t~~eL~~~vqaS~~El~~~l~---~l~a~ei-~G~~r~Ls~~y~~~~L 211 (397)
-.+|-++|.+.+-+|.+-+...|. +-+.+++ +|.+.++|++-+.++.
T Consensus 28 i~lt~~elA~~lg~sr~tv~r~L~~l~~~gli~~~~~~i~I~d~~~L~~~a 78 (82)
T d2zcwa1 28 LKATHDELAAAVGSVRETVTKVIGELAREGYIRSGYGKIQLLDLKGLKELA 78 (82)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEETTEEEESCHHHHHHHH
T ss_pred ecCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCEEEEcCHHHHHHHH
Confidence 467999999999999988776655 5677877 5889999998877654
No 7
>d1e42a2 d.105.1.1 (A:825-937) Beta2-adaptin AP2, C-terminal subdomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.33 E-value=23 Score=26.59 Aligned_cols=17 Identities=24% Similarity=0.771 Sum_probs=14.6
Q ss_pred CCCCHHHHHHHHHHhCCC
Q 015967 287 GRRKMESFMEEWQRKIPE 304 (397)
Q Consensus 287 ~~~~l~eFl~~Wk~~vP~ 304 (397)
|+|+.+.|++.||+. |+
T Consensus 6 G~mdr~~Fl~~Wk~I-p~ 22 (113)
T d1e42a2 6 GKMERQVFLATWKDI-PN 22 (113)
T ss_dssp CCCCHHHHHHHHHHS-CG
T ss_pred CeeCHHHHHHHHhcC-ch
Confidence 789999999999974 54
No 8
>d1mbya_ d.223.1.1 (A:) Serine/threonine-protein kinase Sak C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=17.69 E-value=41 Score=23.30 Aligned_cols=26 Identities=15% Similarity=0.054 Sum_probs=21.0
Q ss_pred cCCcceEEEecCCCCCcCHHHHHHHH
Q 015967 322 LGVDLWIRAFSVSSLPANPAERFSIL 347 (397)
Q Consensus 322 ~~~~~~I~y~~~~~LP~dp~~Rf~~L 347 (397)
.+.+...+|=..++||.-+++|+..|
T Consensus 41 ~~~G~~~~y~~~d~LP~~vreKL~~l 66 (75)
T d1mbya_ 41 SPDGQTTRYGENEKLPEYIKQKLQLL 66 (75)
T ss_dssp CTTSCEEEEETTSCCCHHHHHHHTTT
T ss_pred CCCCceeecCccccccHHHHHHHhhh
Confidence 45666777777778999999999876
No 9
>d2iw5b1 a.4.1.3 (B:376-440) REST corepressor 1, CoREST {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.98 E-value=15 Score=24.49 Aligned_cols=34 Identities=6% Similarity=0.142 Sum_probs=22.9
Q ss_pred cCCCCCChhhhhhhhhccCC------------CCCChhHHHHhhhh
Q 015967 349 GERPKWEWKDLQPYIRDLKV------------PGQSLEGLLLKYTR 382 (397)
Q Consensus 349 ~~~~kW~~~Ei~Pyi~~l~~------------~~~~~d~lllKyaR 382 (397)
+.+++|+.+|..-|++-+.. +|++..++...|.+
T Consensus 3 k~~~~WT~eE~~~f~~~~~~~G~~w~~Ia~~~~~kt~~q~~~~y~~ 48 (65)
T d2iw5b1 3 KCNARWTTEEQLLAVQAIRKYGRDFQAISDVIGNKSVVQVKNFFVN 48 (65)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHSSCHHHHHHHHSSCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCchHHHHHHHcCCCCHHHHHHHHHH
Confidence 35678888888888877664 35556666666654
No 10
>d1omra_ a.39.1.5 (A:) Recoverin {Cow (Bos taurus) [TaxId: 9913]}
Probab=15.45 E-value=1.9e+02 Score=22.26 Aligned_cols=28 Identities=18% Similarity=0.051 Sum_probs=17.0
Q ss_pred HHHHHHHHhhc------CCCCHHHHHHHHHHhCCC
Q 015967 276 CVHFAREILSS------GRRKMESFMEEWQRKIPE 304 (397)
Q Consensus 276 ~r~~a~~lL~~------~~~~l~eFl~~Wk~~vP~ 304 (397)
+...+..+++. |.++++||++ |-..-|.
T Consensus 147 ~~~~~~~if~~~D~d~dG~Is~~EF~~-~~~~~~~ 180 (201)
T d1omra_ 147 PEKRAEKIWGFFGKKDDDKLTEKEFIE-GTLANKE 180 (201)
T ss_dssp HHHHHHHHHHHTTCCTTCCBCHHHHHH-HHHHCHH
T ss_pred HHHHHHHHHHHhCCCCCCCCcHHHHHH-HHHHCHH
Confidence 34445566654 6799999976 4444443
Done!