BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015968
         (397 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Xylose
 pdb|4GBZ|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To D-Glucose
 pdb|4GC0|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily)
           Proton:xylose Symporter Xyle Bound To
           6-Bromo-6-Deoxy-D-Glucose
          Length = 491

 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/329 (27%), Positives = 147/329 (44%), Gaps = 37/329 (11%)

Query: 94  QAKKSSGVVLPFVGVACLGAILFGYHLGVVNGALEYL------AKDLGIAENTVLQGWIV 147
             + +S  +     VA LG +LFGY   V++G +E L       ++L  +    L G+ V
Sbjct: 2   NTQYNSSYIFSITLVATLGGLLFGYDTAVISGTVESLNTVFVAPQNLSESAANSLLGFCV 61

Query: 148 SSLLAGATVGSFTGGSLADKFGRTRTFQLDAVPLAAGAFLCA------------------ 189
           +S L G  +G   GG  +++FGR  + ++ AV         A                  
Sbjct: 62  ASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVY 121

Query: 190 TAQSVQTMIIGRVLXXXXXXXXXXXVPLYISEISPTEIRGALGSVNQLFICVG--IXXXX 247
            A  V   +I R++            P+YI+E++P  IRG L S NQ  I  G  +    
Sbjct: 122 LAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCV 181

Query: 248 XXXXXXXXXXXW-----WRTMFGLAAIPSILLALGMGLSPESPRWLFQQGKKSEAEKSIQ 302
                      W     WR MF    IP++L  + +   PESPRWL  +GK+ +AE  ++
Sbjct: 182 NYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQEQAEGILR 241

Query: 303 TLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSSRYWKVVSVGAALFLFQQLAGINAVV 362
            + G    ++ + ++ ++         G   +F      V+ +G  L +FQQ  GIN V+
Sbjct: 242 KIMGNTLATQAVQEIKHS-LDHGRKTGGRLLMFGV---GVIVIGVMLSIFQQFVGINVVL 297

Query: 363 YYSTSVFRSVGIESDVA--ASALVGAANV 389
           YY+  VF+++G  +D+A   + +VG  N+
Sbjct: 298 YYAPEVFKTLGASTDIALLQTIIVGVINL 326


>pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
           Desulfurase From Synechocystis Pcc 6803
 pdb|1T3I|B Chain B, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE
           Desulfurase From Synechocystis Pcc 6803
          Length = 420

 Score = 29.3 bits (64), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 287 WLFQQGKKSEAEKSIQTLYGKERVSEVMLDLTNAGQGSAEPEAGWFDLFSS 337
           WL   G K  A   I  LYGKE + E M      G+  AE    +FD F++
Sbjct: 224 WLVASGHKMCAPTGIGFLYGKEEILEAMPPFFGGGEMIAE---VFFDHFTT 271


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.392 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,389,042
Number of Sequences: 62578
Number of extensions: 327309
Number of successful extensions: 778
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 771
Number of HSP's gapped (non-prelim): 3
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 52 (24.6 bits)