BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015969
         (397 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
 pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
           Extrusion (Mate) Transporter
          Length = 460

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 9/221 (4%)

Query: 143 YILLSERCK--KTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAE 200
           YI+ S+R    K +  F       L    +L    A  L  E+  + ++ L+   L +  
Sbjct: 213 YIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGST- 271

Query: 201 IVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFXXXXXXXXXXXXXXX 260
            V+ +  + +  +  VFM  +   AA S+RVG++LG    K                   
Sbjct: 272 -VVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACI 330

Query: 261 XXXXXXXXRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVA 320
                   R  ++  +T    V     +L  F A+   ++ +Q V +G   G      + 
Sbjct: 331 TALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIF 390

Query: 321 YVNVGCYYLIGIPIGCLLGF-----KFNLGTKGIWSGMIGG 356
           +     Y+++G+P G +LG      +  LG KG W G I G
Sbjct: 391 HRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIG 431


>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
 pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
 pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
           Monobody
 pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
          Length = 459

 Score = 32.7 bits (73), Expect = 0.36,   Method: Compositional matrix adjust.
 Identities = 33/179 (18%), Positives = 70/179 (39%), Gaps = 3/179 (1%)

Query: 188 IIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFXX 247
           I+ LIA      E  + +  + ++++G ++MI     +A +VR+G  LG       ++  
Sbjct: 264 IVFLIAPF---GEDYVAAQQVGISLSGILYMIPQSVGSAGTVRIGFSLGRREFSRARYIS 320

Query: 248 XXXXXXXXXXXXXXXXXXXXXRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLS 307
                                R+ ++  +     V    + +  F  L    +  Q + S
Sbjct: 321 GVSLVSGWVLAVITVLSLVLFRSPLASMYNDDPAVLSIASTVLLFAGLFQPADFTQCIAS 380

Query: 308 GVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVY 366
               G        +++   ++  G+  G LL ++F++G  G W+ +I    I  + LV+
Sbjct: 381 YALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIYGFWTALIASLTIAAVALVW 439


>pdb|3HWC|A Chain A, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
           Of Burkholderia Cepacia Ac1100
 pdb|3HWC|B Chain B, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
           Of Burkholderia Cepacia Ac1100
 pdb|3HWC|C Chain C, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
           Of Burkholderia Cepacia Ac1100
 pdb|3HWC|D Chain D, Crystal Structure Of Chlorophenol 4-Monooxygenase (Tftd)
           Of Burkholderia Cepacia Ac1100
          Length = 515

 Score = 32.0 bits (71), Expect = 0.58,   Method: Compositional matrix adjust.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 13/57 (22%)

Query: 283 ADSVAELSPFLAL------SVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIP 333
           +D+    SP L +       +I+NG++ V +G+A G        Y+++GC Y  GIP
Sbjct: 162 SDAAQARSPNLRIVEKTDDGIIVNGVKAVGTGIAFG-------DYMHIGCLYRPGIP 211


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.141    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,768,985
Number of Sequences: 62578
Number of extensions: 278987
Number of successful extensions: 555
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 548
Number of HSP's gapped (non-prelim): 4
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 52 (24.6 bits)