Query 015969
Match_columns 397
No_of_seqs 198 out of 1963
Neff 10.5
Searched_HMMs 46136
Date Fri Mar 29 02:35:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015969.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015969hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4E-54 8.7E-59 405.2 44.9 377 1-380 72-452 (455)
2 PRK10189 MATE family multidrug 100.0 9.9E-50 2.1E-54 378.9 42.6 373 2-376 85-467 (478)
3 PRK00187 multidrug efflux prot 100.0 5.9E-49 1.3E-53 373.5 45.4 368 2-371 66-444 (464)
4 PRK01766 multidrug efflux prot 100.0 7.6E-47 1.7E-51 360.1 45.2 372 2-375 68-446 (456)
5 PRK09575 vmrA multidrug efflux 100.0 7.9E-47 1.7E-51 358.4 43.3 365 2-370 69-435 (453)
6 PRK10367 DNA-damage-inducible 100.0 1.6E-46 3.4E-51 353.7 43.9 364 2-375 66-434 (441)
7 TIGR01695 mviN integral membra 100.0 1.9E-34 4E-39 279.0 41.6 356 6-371 61-428 (502)
8 TIGR02900 spore_V_B stage V sp 100.0 1.3E-33 2.9E-38 272.1 41.2 361 2-371 57-434 (488)
9 TIGR00797 matE putative efflux 100.0 7E-34 1.5E-38 261.5 34.8 290 2-293 49-341 (342)
10 PRK15099 O-antigen translocase 100.0 2.9E-32 6.3E-37 256.9 39.7 349 2-369 59-410 (416)
11 KOG1347 Uncharacterized membra 100.0 9.8E-34 2.1E-38 264.7 27.7 388 2-391 85-472 (473)
12 PF03023 MVIN: MviN-like prote 100.0 8.7E-30 1.9E-34 240.4 43.7 357 3-371 35-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 3.3E-26 7.1E-31 212.6 42.9 363 2-372 67-438 (518)
14 COG0534 NorM Na+-driven multid 100.0 7.6E-26 1.6E-30 213.5 27.6 210 161-373 12-223 (455)
15 PRK00187 multidrug efflux prot 99.9 2.5E-25 5.4E-30 211.8 27.3 208 160-371 4-215 (464)
16 PRK10367 DNA-damage-inducible 99.9 1.6E-24 3.4E-29 204.5 26.7 206 163-370 6-211 (441)
17 PRK10189 MATE family multidrug 99.9 1.1E-24 2.4E-29 207.4 25.3 205 163-370 26-236 (478)
18 PRK10459 colanic acid exporter 99.9 2.1E-22 4.6E-27 194.2 39.8 328 23-370 75-404 (492)
19 PRK01766 multidrug efflux prot 99.9 8.1E-24 1.7E-28 201.9 28.4 209 161-372 7-219 (456)
20 PRK09575 vmrA multidrug efflux 99.9 2.7E-24 5.9E-29 204.3 23.4 208 162-372 8-216 (453)
21 COG2244 RfbX Membrane protein 99.9 2.9E-20 6.2E-25 178.9 36.6 278 64-353 117-394 (480)
22 TIGR00797 matE putative efflux 99.9 1.9E-19 4.1E-24 165.6 23.1 194 174-370 1-196 (342)
23 PF01554 MatE: MatE; InterPro 99.8 5.8E-21 1.2E-25 156.0 8.7 162 174-337 1-162 (162)
24 TIGR02900 spore_V_B stage V sp 99.6 3.7E-13 7.9E-18 130.0 21.6 196 169-371 2-204 (488)
25 KOG1347 Uncharacterized membra 99.6 3.8E-13 8.1E-18 126.7 20.5 207 162-372 24-231 (473)
26 PF01943 Polysacc_synt: Polysa 99.5 2.7E-11 5.9E-16 107.5 25.5 217 3-234 54-272 (273)
27 TIGR01695 mviN integral membra 99.5 9.9E-12 2.1E-16 120.5 23.8 197 168-371 2-207 (502)
28 PF01554 MatE: MatE; InterPro 99.3 2.8E-13 6E-18 110.5 1.8 112 2-113 49-162 (162)
29 PRK15099 O-antigen translocase 99.3 1.4E-10 3E-15 109.6 19.6 192 169-371 4-197 (416)
30 PF13440 Polysacc_synt_3: Poly 99.3 2.7E-09 5.8E-14 93.5 26.1 210 4-234 40-251 (251)
31 COG0728 MviN Uncharacterized m 99.3 2.9E-09 6.3E-14 100.1 26.4 145 2-148 289-438 (518)
32 PF03023 MVIN: MviN-like prote 99.3 6.2E-10 1.4E-14 105.7 21.6 145 2-148 255-404 (451)
33 PF04506 Rft-1: Rft protein; 98.9 1.3E-06 2.8E-11 84.0 25.8 204 164-370 251-469 (549)
34 PRK10459 colanic acid exporter 98.8 2.9E-06 6.4E-11 82.1 26.2 137 5-147 268-405 (492)
35 KOG2864 Nuclear division RFT1 98.6 4.9E-05 1.1E-09 69.0 25.1 300 68-370 127-448 (530)
36 COG2244 RfbX Membrane protein 98.6 2.7E-06 5.8E-11 82.2 18.4 126 2-132 270-396 (480)
37 PF14667 Polysacc_synt_C: Poly 98.6 1.1E-05 2.5E-10 64.1 18.3 80 67-148 2-81 (146)
38 PF01943 Polysacc_synt: Polysa 98.3 0.00023 5.1E-09 62.8 21.0 187 170-371 3-191 (273)
39 PF14667 Polysacc_synt_C: Poly 98.3 4.2E-06 9.2E-11 66.6 8.7 79 290-371 2-80 (146)
40 PF07260 ANKH: Progressive ank 98.2 0.0017 3.7E-08 56.7 23.3 189 162-358 7-199 (345)
41 COG4267 Predicted membrane pro 98.1 0.0051 1.1E-07 54.9 24.3 306 6-339 85-413 (467)
42 PF07260 ANKH: Progressive ank 98.1 0.0035 7.6E-08 54.8 21.9 218 44-266 108-343 (345)
43 PF13440 Polysacc_synt_3: Poly 98.0 0.0033 7.1E-08 54.8 20.9 161 191-369 10-171 (251)
44 PF04506 Rft-1: Rft protein; 97.0 0.036 7.8E-07 53.9 16.3 128 19-147 339-470 (549)
45 KOG2864 Nuclear division RFT1 97.0 0.099 2.2E-06 48.3 17.1 130 16-147 316-449 (530)
46 COG4267 Predicted membrane pro 86.1 28 0.0006 32.1 19.2 136 218-370 75-210 (467)
47 TIGR00822 EII-Sor PTS system, 69.3 79 0.0017 27.8 16.1 87 218-307 111-198 (265)
48 PF05975 EcsB: Bacterial ABC t 55.4 1.8E+02 0.0039 27.2 15.6 38 238-275 88-125 (386)
49 PF14184 YrvL: Regulatory prot 53.6 1E+02 0.0022 23.8 13.2 101 25-127 4-105 (132)
50 PF04505 Dispanin: Interferon- 53.3 75 0.0016 22.1 6.6 38 223-260 36-73 (82)
51 KOG2468 Dolichol kinase [Lipid 53.2 1.8E+02 0.0038 27.7 10.0 74 172-254 379-452 (510)
52 PF14184 YrvL: Regulatory prot 49.8 1.2E+02 0.0026 23.4 11.3 108 252-363 9-117 (132)
53 PF05313 Pox_P21: Poxvirus P21 44.2 1.2E+02 0.0027 24.6 6.7 27 121-147 135-161 (189)
54 PF03904 DUF334: Domain of unk 41.7 1.3E+02 0.0028 25.5 6.7 40 16-55 141-180 (230)
55 COG3715 ManY Phosphotransferas 39.6 2.6E+02 0.0057 24.5 17.3 88 218-308 111-199 (265)
56 PF01102 Glycophorin_A: Glycop 38.6 41 0.00088 25.5 3.1 28 347-374 67-94 (122)
57 TIGR03727 urea_t_UrtC_arc urea 38.0 3.4E+02 0.0073 25.3 9.9 15 167-181 133-147 (364)
58 PF03547 Mem_trans: Membrane t 37.3 2.1E+02 0.0046 26.5 8.6 12 251-262 34-45 (385)
59 PRK10739 putative antibiotic t 37.2 2.5E+02 0.0054 23.5 8.1 59 227-289 20-78 (197)
60 PRK01637 hypothetical protein; 36.1 3.1E+02 0.0068 24.3 18.6 10 230-239 115-124 (286)
61 PF11457 DUF3021: Protein of u 35.6 2E+02 0.0044 22.0 14.6 22 320-341 75-96 (136)
62 COG4794 EscS Type III secretor 35.1 1.6E+02 0.0035 20.7 7.9 38 17-54 2-39 (89)
63 TIGR00383 corA magnesium Mg(2+ 33.6 1.2E+02 0.0027 27.3 6.2 58 314-373 253-317 (318)
64 PF10160 Tmemb_40: Predicted m 31.8 3.5E+02 0.0076 23.6 9.8 66 220-287 91-156 (261)
65 PRK09546 zntB zinc transporter 30.4 1.6E+02 0.0034 26.8 6.3 18 356-373 306-323 (324)
66 COG0170 SEC59 Dolichol kinase 28.6 1.2E+02 0.0026 25.7 4.8 45 218-262 120-164 (216)
67 PRK09757 PTS system N-acetylga 28.3 4.2E+02 0.0091 23.4 18.3 89 218-309 112-201 (267)
68 COG0598 CorA Mg2+ and Co2+ tra 27.7 3E+02 0.0064 25.0 7.6 57 314-373 257-321 (322)
69 PF04505 Dispanin: Interferon- 27.5 1.5E+02 0.0031 20.7 4.3 34 7-40 42-75 (82)
70 PRK11085 magnesium/nickel/coba 26.9 2.3E+02 0.0049 25.8 6.5 19 355-373 297-315 (316)
71 COG1620 LldP L-lactate permeas 26.6 4.4E+02 0.0095 25.7 8.4 23 309-331 203-225 (522)
72 TIGR00427 membrane protein, Ma 26.6 3.8E+02 0.0083 22.4 8.0 58 227-288 23-80 (201)
73 KOG2532 Permease of the major 26.3 3.8E+02 0.0081 25.9 8.3 77 286-363 133-211 (466)
74 PF05975 EcsB: Bacterial ABC t 25.4 5.6E+02 0.012 23.9 16.0 40 17-56 89-130 (386)
75 PRK11111 hypothetical protein; 25.2 4.2E+02 0.0092 22.4 8.0 56 229-288 28-83 (214)
76 PF05684 DUF819: Protein of un 25.2 5.7E+02 0.012 23.9 12.6 13 239-251 73-85 (378)
77 COG4736 CcoQ Cbb3-type cytochr 24.4 2.1E+02 0.0045 18.6 4.2 12 368-379 29-40 (60)
78 PRK06569 F0F1 ATP synthase sub 23.8 1.4E+02 0.0031 23.8 4.1 36 350-385 9-44 (155)
79 PF02705 K_trans: K+ potassium 22.6 5.8E+02 0.013 25.2 8.6 38 334-372 398-435 (534)
80 COG1955 FlaJ Archaeal flagella 20.7 8E+02 0.017 24.0 10.4 97 82-178 156-254 (527)
81 PRK10995 inner membrane protei 20.0 5.5E+02 0.012 21.8 8.0 57 228-288 25-81 (221)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4e-54 Score=405.21 Aligned_cols=377 Identities=25% Similarity=0.392 Sum_probs=356.0
Q ss_pred CcchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHH
Q 015969 1 MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAV 79 (397)
Q Consensus 1 l~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~ 79 (397)
++.|+++++||++|+||++++++..+++++++++++++.+++ +.+.++++.+++.++|+.+.+.+|+++..++.|+..+
T Consensus 72 l~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~ 151 (455)
T COG0534 72 LGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALL 151 (455)
T ss_pred HHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999999999888866 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHH-hC-CCccchHHHHHHHHHHHHHHHHHHHHhccc-cccccCC
Q 015969 80 NFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFK-LG-WGLLGASLVLSLSWWIIVAAQFVYILLSER-CKKTWTG 156 (397)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~-~~-~g~~gaa~at~i~~~~~~~~~~~~~~~~~~-~~~~~~~ 156 (397)
+.++.+.+|+.||+|.+++.+++++++|+++|++|+++ ++ +|+.|+++||++++.++.++..+++.++++ ......+
T Consensus 152 ~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (455)
T COG0534 152 SFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKK 231 (455)
T ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence 99999999999999999999999999999999999998 68 999999999999999999999999998874 2222233
Q ss_pred CchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015969 157 FSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELG 236 (397)
Q Consensus 157 ~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g 236 (397)
..+++++.+|++++.|.|..+++..+...+...+.+++++| ++.+|+|+++.++.++.++++.|++++++++++|++|
T Consensus 232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~G 309 (455)
T COG0534 232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLG 309 (455)
T ss_pred ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 44567799999999999999999999999999999999999 7799999999999999999999999999999999999
Q ss_pred cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcc
Q 015969 237 AAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQ 316 (397)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~ 316 (397)
+||+|++++..+.+..+++.++...+.+++++++++.++|++|+|+.+.+.+++++..+..++++++....+.+||.||+
T Consensus 310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~ 389 (455)
T COG0534 310 AGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDA 389 (455)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 015969 317 AFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKA 380 (397)
Q Consensus 317 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (397)
+.+++.++.+.|.+.+|+.|++.+.. +|..|+|+++..++.++.++..+++++.+|+++..+.
T Consensus 390 ~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (455)
T COG0534 390 KIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA 452 (455)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 99999999999999999999998776 8999999999999999999999999998888765543
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=9.9e-50 Score=378.85 Aligned_cols=373 Identities=17% Similarity=0.228 Sum_probs=343.3
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC--CCHHHHHHHHHHHHHHHhHHHHHH
Q 015969 2 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLG--ESSAIASAAAIFVFGLIPQIFAYA 78 (397)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~y~~~~~~~~~~~~ 78 (397)
++|.++++||++|++|+|++++..++++.++.+.+++.+++ +.+.++++.+++ .|+|+.+.+.+|+++..++.|+..
T Consensus 85 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~ 164 (478)
T PRK10189 85 DLGTTVVVAFSLGKRDRRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAA 164 (478)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999998876 778899999984 799999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHh----CCCccchHHHHHHHHHHHHHHHHHHHHhc-c-cccc
Q 015969 79 VNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKL----GWGLLGASLVLSLSWWIIVAAQFVYILLS-E-RCKK 152 (397)
Q Consensus 79 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~----~~g~~gaa~at~i~~~~~~~~~~~~~~~~-~-~~~~ 152 (397)
+....++++|+.|+++.+++.+++..++|+++++++++++ ++|+.|+++|+.+++.+..++..++++++ + ..+.
T Consensus 165 ~~~~~~~~lr~~G~~~~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~ 244 (478)
T PRK10189 165 ITLIGSGALRGAGNTKIPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRI 244 (478)
T ss_pred HHHHHHHHHHhcCchHHhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCcccee
Confidence 9999999999999999999999999999999999999864 79999999999999999998877666543 2 1222
Q ss_pred ccCC-CchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015969 153 TWTG-FSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRV 231 (397)
Q Consensus 153 ~~~~-~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~v 231 (397)
++++ +.+.+++.+|+++++|.|..++...........+.+++++| ++++|+++++.++.++..++..|++++.++++
T Consensus 245 ~~~~~~~~~~~~~~~~il~iG~P~~~~~~~~~~~~~~~~~~~~~~G--~~~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lv 322 (478)
T PRK10189 245 SLKSYFKPLNFAIIWEVMGIGIPASIESVLFNGGKLLTQMFVAGMG--TSVIAGNFIAFSIAALINLPGNALGSASTIIT 322 (478)
T ss_pred eeccccccCCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 11235688999999999999999999888888888889998 67999999999999999999999999999999
Q ss_pred HHhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 015969 232 GNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAV 311 (397)
Q Consensus 232 s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 311 (397)
+|++|+||++++|+..+.+.+++..++...+++++++++++.++|++|+|+.+.+..++++.++..++++++....+.+|
T Consensus 323 g~~~Ga~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lr 402 (478)
T PRK10189 323 GTRLGKGQIAQAERQLRHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLK 402 (478)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCccchhHHHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhcCHHHH
Q 015969 312 GCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKE 376 (397)
Q Consensus 312 ~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 376 (397)
|.||++.++++++.+.|++.+|+.|++....++|..|+|++..+++.+++++.++++++++|++.
T Consensus 403 g~G~t~~~~~i~~~~~~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 403 GARDARYAMWVSMLGMWGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 99999999999999999999999999988788999999999999999999999999999999883
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=5.9e-49 Score=373.52 Aligned_cols=368 Identities=22% Similarity=0.285 Sum_probs=335.2
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015969 2 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNF 81 (397)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 81 (397)
++|.++++||++|+||+|++++..++++.+..+++++..++..+.++++.+++.|||+.+.+.+|+++..++.|+..+..
T Consensus 66 ~~~~~~i~aq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~ 145 (464)
T PRK00187 66 IAAVGTLVAIRHGAGDIEGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFM 145 (464)
T ss_pred HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999999999999999999988876557799999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHh----CCCccchHHHHHHHHHHHHHHHHHHHHhccccc-cc-cC
Q 015969 82 PIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKL----GWGLLGASLVLSLSWWIIVAAQFVYILLSERCK-KT-WT 155 (397)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~----~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~-~~-~~ 155 (397)
.+++++|+.|+++++++.++++.++|+++|++|++++ ++|+.|+++||.+++....+.+.+++++++..+ .+ ++
T Consensus 146 ~~~~~l~~~g~~~~~~~~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (464)
T PRK00187 146 ALRGFTSALGRAGPVMVISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRK 225 (464)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhc
Confidence 9999999999999999999999999999999999853 489999999999999988887777776543221 11 11
Q ss_pred CCchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015969 156 GFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNEL 235 (397)
Q Consensus 156 ~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~ 235 (397)
+..+++++.+|++++.++|.++++..+.....+++.+++++| ++++|++++++++..+...+..|++.+.+++++|++
T Consensus 226 ~~~~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G--~~alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~ 303 (464)
T PRK00187 226 GLSRPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALG--STQLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHY 303 (464)
T ss_pred cccCCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222345678999999999999999999999999999999999 679999999999999999999999999999999999
Q ss_pred ccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC--ch---hHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 015969 236 GAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTG--GS---TVADSVAELSPFLALSVILNGIQPVLSGVA 310 (397)
Q Consensus 236 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 310 (397)
|+||+|++++..+.++.++..++++.+++++++++++.++|++ |+ |+.+.+..++++..++.++++++....+.+
T Consensus 304 Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~l 383 (464)
T PRK00187 304 GAGRLLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAI 383 (464)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhH
Confidence 9999999999999999999999999999999999999999963 44 688999999999999999999999999999
Q ss_pred hhcCccchhHHHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 015969 311 VGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRT 371 (397)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 371 (397)
|+.||++.+++.++.+.|++++|+.|++.+.+++|+.|+|+++.+++.+..+....+++++
T Consensus 384 rg~G~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~~ 444 (464)
T PRK00187 384 RGLKDARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEWK 444 (464)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999889999999999988889999999999999999988766666443
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=7.6e-47 Score=360.15 Aligned_cols=372 Identities=20% Similarity=0.385 Sum_probs=342.1
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 015969 2 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVN 80 (397)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (397)
+.|.++.+||++|++|+++.++..++++.+.++.+++.+++ +.+.++++.+++.|+|..+.+.+|+++.+++.|+..+.
T Consensus 68 ~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~ 147 (456)
T PRK01766 68 LLALTPIVAQLNGAGRRERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLY 147 (456)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999988876 77789999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHH----hCCCccchHHHHHHHHHHHHHHHHHHHHhccccc--ccc
Q 015969 81 FPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFK----LGWGLLGASLVLSLSWWIIVAAQFVYILLSERCK--KTW 154 (397)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~----~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~--~~~ 154 (397)
..+++++|+.|+++++++.++++.++|+++++++++. .++|+.|+++||.+++++..++..++++++++.+ +.+
T Consensus 148 ~~~~~~l~~~g~~~~~~~~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~ 227 (456)
T PRK01766 148 QVLRSFIDGLGKTKPTMVIGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLF 227 (456)
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhh
Confidence 9999999999999999999999999999999999864 2589999999999999999999888887654321 111
Q ss_pred CCCchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015969 155 TGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNE 234 (397)
Q Consensus 155 ~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~ 234 (397)
.+..+++++.+|++++.++|..+++..+...+.++..+++++| ++++++++++.++.++...+..|++.+.++.++|+
T Consensus 228 ~~~~~~~~~~~k~il~l~~P~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~ 305 (456)
T PRK01766 228 KGLYKPDWAVIKRLLKLGLPIGLAIFFEVSLFAVVTLLVSPLG--TVTVAAHQIALNFSSLLFMLPLSLAMALTIRVGFE 305 (456)
T ss_pred ccccCCCHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222345678999999999999999999999999999999998 66899999999999999999999999999999999
Q ss_pred hccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcC
Q 015969 235 LGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCG 314 (397)
Q Consensus 235 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g 314 (397)
+|+||++++++..+.++++++.++++.+++++.+++++.++|++||++.+.+..++++..+..++++++....+.+||.|
T Consensus 306 ~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g 385 (456)
T PRK01766 306 LGAGRTLDARQYAYIGLAVGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYK 385 (456)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhcCHHH
Q 015969 315 WQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNK 375 (397)
Q Consensus 315 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 375 (397)
|++.+++.++.+.|++.+|..|++.+.+++|+.|+|+++.+++.+.+++.++++++.+|+.
T Consensus 386 ~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 386 DTRVIFFITFIAYWVLGLPLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998899999999998888899999999999999999998888887766554
No 5
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=7.9e-47 Score=358.40 Aligned_cols=365 Identities=15% Similarity=0.196 Sum_probs=332.2
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 015969 2 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVN 80 (397)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (397)
+.|.++++||++|+||+|++++..++++.++.+.+++.+++ +.+.++++.+++.|++..+.+.+|+++..++.|+..+.
T Consensus 69 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~ 148 (453)
T PRK09575 69 GMGTGSLLSIKRGEGDLEKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGA 148 (453)
T ss_pred hccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999988876 78899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHhccccccccCCCchh
Q 015969 81 FPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQ 160 (397)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (397)
....+++|+.|+++.++..++.+.++|+++|+++++.+++|+.|+++||.+++.+..++..+++++++...+...+..++
T Consensus 149 ~~~~~~l~~~g~~~~~~~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (453)
T PRK09575 149 IALPFLLRNDESPNLATGLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRF 228 (453)
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCc
Confidence 99999999999999999999999999999999999888999999999999999999999887777654322111112234
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 015969 161 AFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHP 240 (397)
Q Consensus 161 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~ 240 (397)
+++.+|++++.|.|..+++..........+.+.+++|+ ++++|+++++.++..+...+..|++++.+|.+||++|+||+
T Consensus 229 ~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~g~-~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~ 307 (453)
T PRK09575 229 NWSLAPKIVLLGSSSFFMYLYGSFVVALHNRLFMEYGS-ALTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQY 307 (453)
T ss_pred CHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHhCc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCCh
Confidence 56789999999999999999998888888888888884 45799999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC-chhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchh
Q 015969 241 KSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTG-GSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFV 319 (397)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 319 (397)
|++++..+.++++++..+++.+++++.+++++.++|++ |||+.+.+.+++++..++.+++++.....+.+||.||++.+
T Consensus 308 ~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~ 387 (453)
T PRK09575 308 DNIKKLLKLAMKVTVLAGIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKA 387 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999999999999999999999999985 78999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 015969 320 AYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLR 370 (397)
Q Consensus 320 ~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 370 (397)
+..++.. +++++|..|++.. .+|+.|+|+++.+++.+..++..+++++
T Consensus 388 ~~~~~~~-~~v~ip~~~ll~~--~~G~~Gvw~a~~~~~~~~~~~~~~~~~~ 435 (453)
T PRK09575 388 LFISIGN-MLIQLPFLFILPK--WLGVDGVWLAMPLSNIALSLVVAPMLWR 435 (453)
T ss_pred HHHHHHh-HHHHHHHHHHHHH--HHCcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 9999887 5789999999854 3699999999999999988877666654
No 6
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=1.6e-46 Score=353.75 Aligned_cols=364 Identities=14% Similarity=0.144 Sum_probs=316.8
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 015969 2 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVN 80 (397)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (397)
+.|.++++||++|+||+|++++..++++.++++++++..++ ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+.
T Consensus 66 ~~g~~~lvsq~~Ga~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~ 145 (441)
T PRK10367 66 RMSTTGLTAQAFGAKNPQALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLAN 145 (441)
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999988866 77889999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHhccccccccCCCchh
Q 015969 81 FPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQ 160 (397)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (397)
.++++++|+.||+|.+++.+++++++|+++|+++++++++|+.|+++||.+++.+..++..++++++++.+....+..++
T Consensus 146 ~~~~~~lr~~G~~~~~~~~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 225 (441)
T PRK10367 146 LVLLGWLLGVQYARAPVILLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKT 225 (441)
T ss_pred HHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhh
Confidence 99999999999999999999999999999999999998999999999999999999988877777643222110111112
Q ss_pred h-hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 015969 161 A-FSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAH 239 (397)
Q Consensus 161 ~-~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~ 239 (397)
+ ++.+|++++++.|..+++..+...+.+.+.+++++| ++++|+|+++.++.++.+++..|++++.+|+++|++|+||
T Consensus 226 ~~~~~~~~il~ig~P~~~~~~~~~~~~~~~~~~~~~~G--~~alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~ 303 (441)
T PRK10367 226 AWRGNFRRLLALNRDIMLRSLLLQLCFGAITVLGARLG--SDIIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARD 303 (441)
T ss_pred hhHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCC
Confidence 2 246899999999999999999999999999999999 6689999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcC---cc
Q 015969 240 PKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCG---WQ 316 (397)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g---~~ 316 (397)
+|++|+..+.+.+++...+.+.+++++.+++++.++|++|+|+.+.+..++++..+..+...+.....++++|.+ |+
T Consensus 304 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt 383 (441)
T PRK10367 304 GSQLLDVWRAACRQSGIVALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEM 383 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHH
Confidence 999999999999999999999999999999999999999999999999999998876443334444444455555 59
Q ss_pred chhHHHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhcCHHH
Q 015969 317 AFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNK 375 (397)
Q Consensus 317 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 375 (397)
+.+++.++++.|+..++ .+++|..|+|++..+++.+++++...+++++ |++
T Consensus 384 ~~~~~~~~~~~~~~~~~-------~~~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 384 RNSMAVAAAGFALTLLT-------LPWLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred HHHHHHHHHHHHHHHHH-------HHHcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 99999999986642222 2357999999999999999999877766554 643
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=1.9e-34 Score=278.96 Aligned_cols=356 Identities=14% Similarity=0.089 Sum_probs=300.6
Q ss_pred hhHHHhhhCCCCc-chHHHHHHHHHHHHHHHHHH-HHHH-HHhHHHHHHHc--CCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 015969 6 ETLCGQAYGAQKY-DMLGVYLQRSAVILTATGIP-LMVI-YIFSKQILLLL--GESSAIASAAAIFVFGLIPQIFAYAVN 80 (397)
Q Consensus 6 ~~~is~~~~~~~~-~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~i~~~~--~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (397)
+..+++..+++|+ |++++...+++....+.+.+ .+++ +.+++++..++ +.+++..+.+.+|+++..+++++..+.
T Consensus 61 ~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~ 140 (502)
T TIGR01695 61 SAFVPVFTKAKKKEKEARRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLA 140 (502)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555444 57777777777766655544 4444 77888888877 567787889999999999999999999
Q ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCccchH--HHHHHHHHHHHHHHHHHHHhccccccccCCCc
Q 015969 81 FPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGAS--LVLSLSWWIIVAAQFVYILLSERCKKTWTGFS 158 (397)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa--~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (397)
...++++|+.||++.+++.+++.++++++..+++ ..++|..|++ +++++++.+..++..++.+|++. +.+ ++.
T Consensus 141 ~~~~~~l~~~~~~~~~~~~~i~~~i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~-~~~- 215 (502)
T TIGR01695 141 AVFGGILNARKRFFIPSFSPILFNIGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGF-LLK-PRF- 215 (502)
T ss_pred HHHHHHHhccCeeHHHHHHHHHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-ccc-CcC-
Confidence 9999999999999999999999998887754333 4578999988 99999999999888777766431 111 111
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcc
Q 015969 159 LQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFM-IAVGFNAAASVRVGNELGA 237 (397)
Q Consensus 159 ~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~-~~~~~~~a~~~~vs~~~g~ 237 (397)
+.+++..|++++++.|..+++........+|..+.+.++ +.++++|+.+.++.++... +..+++++..|.+++++|+
T Consensus 216 ~~~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~--~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~ 293 (502)
T TIGR01695 216 NFRDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLE--IGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASE 293 (502)
T ss_pred CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 224478999999999999999999999999998877777 4589999999999988765 5789999999999999999
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccC----chhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Q 015969 238 AHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTG----GSTVADSVAELSPFLALSVILNGIQPVLSGVAVGC 313 (397)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 313 (397)
+|++++++..+++.+....++++.+++++.+++++..+|.+ |+|..+.+..++++++++.++.++.....+.+++.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~ 373 (502)
T TIGR01695 294 GNWNELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYAR 373 (502)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhc
Confidence 99999999999999999999999999999999999999865 56778889999999999999999999999999999
Q ss_pred CccchhHHHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 015969 314 GWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRT 371 (397)
Q Consensus 314 g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 371 (397)
||++.+++.++.+ .++++++++++. +.+|..|+|+++.+++.+..++..++.+|+
T Consensus 374 g~~~~~~~~~~~~-~~i~i~l~~~l~--~~~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 374 KDTRTPFINSVIS-VVLNALLSLLLI--FPLGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred cCCccCHHHHHHH-HHHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999998 578999999884 467999999999999999988877777665
No 8
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=1.3e-33 Score=272.09 Aligned_cols=361 Identities=15% Similarity=0.166 Sum_probs=301.8
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 015969 2 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVN 80 (397)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (397)
+++..+.+||+.|++|+++.++.+++++++.++.+++.+++ +.+.+++...++.+++. ..++++..+.+++..+.
T Consensus 57 ~~a~~~~is~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~ 132 (488)
T TIGR02900 57 PVAISKFVAEASAKNDRKNIKKILKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALS 132 (488)
T ss_pred HHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHH
Confidence 46778899999999999999999999999999999988866 67777777766666553 35688889999999999
Q ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHh-----CCCccchHHHHHHHHHHHHHHHHHHHHhccccc--cc
Q 015969 81 FPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKL-----GWGLLGASLVLSLSWWIIVAAQFVYILLSERCK--KT 153 (397)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~-----~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~--~~ 153 (397)
...++.+|++||+|..+..+++++++|+.++..++..+ ++|+.|+++++.+++.+..+...++.+|+++.+ ..
T Consensus 133 ~~~~~~l~~~~~~~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 212 (488)
T TIGR02900 133 SVLKGYFQGISNMKPPAYIQVIEQIVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFP 212 (488)
T ss_pred HHHHHHHhhhccchHhHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 99999999999999999999999999998877666432 356888999999999999998877665543322 11
Q ss_pred cCCCchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc----CC-hHH---HHHHH-HHHHHHHHHHHHHHHHHH
Q 015969 154 WTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLL----DN-AEI---VLDSL-SICMTIAGWVFMIAVGFN 224 (397)
Q Consensus 154 ~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~----~~-~~~---~~a~~-~i~~~i~~~~~~~~~~~~ 224 (397)
+.+..+.+++.+|++++++.|..++++........|+.++++. +. ..+ .++.+ +.+.++..+...+..+++
T Consensus 213 ~~~~~~~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~ 292 (488)
T TIGR02900 213 FFDYKSEGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLS 292 (488)
T ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHH
Confidence 1112234457899999999999999999999999999888754 21 011 22333 355667777778889999
Q ss_pred HHHHHHHHHhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHH
Q 015969 225 AAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQP 304 (397)
Q Consensus 225 ~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 304 (397)
++..|.++++.|+||+++.++..++..+....++.+.+..+..+++++..++.++++ +.++++++++..++..+..
T Consensus 293 ~~~~p~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~ 368 (488)
T TIGR02900 293 TALVPDISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSA 368 (488)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876554 4667999999999999999
Q ss_pred HHHHHHhhcCccchhHHHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 015969 305 VLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRT 371 (397)
Q Consensus 305 ~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 371 (397)
...+.+++.||+|.+++.++.+ .++++++++++...|++|..|+|+++.+++.+..++..+..+|.
T Consensus 369 ~~~~~l~~~g~~~~~~~~~~~~-~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 369 PLQSILQGLGKQKVALRNSLIG-AIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHHHHHHhcCcchHHHHHHHHH-HHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998 58899999988655889999999999999999998887777653
No 9
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=7e-34 Score=261.52 Aligned_cols=290 Identities=31% Similarity=0.531 Sum_probs=264.8
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 015969 2 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVN 80 (397)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (397)
++|..+.++|++|++|+|+.++..++++.+..+.+++.+++ +.+.+++.++++.|++..+.+.+|++++.++.++..+.
T Consensus 49 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~ 128 (342)
T TIGR00797 49 GTATTALVAQAVGAGNYQRLGRQAQQSLLLALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLN 128 (342)
T ss_pred HHhHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57889999999999999999999999999999999999876 78899999999888888999999999999999999999
Q ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHH-HhC-CCccchHHHHHHHHHHHHHHHHHHHHhccccccccCCCc
Q 015969 81 FPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIF-KLG-WGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFS 158 (397)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~-~~~-~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (397)
.+..+++|+.|+++.+...++++.++++++++++++ .++ +|+.|+++++.+++++..++..++.+|+++.+.++++..
T Consensus 129 ~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (342)
T TIGR00797 129 FVLRGFLRGQGDTKTPMYITLIGNVINIILNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLL 208 (342)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCccccccccc
Confidence 999999999999999999999999999999999987 677 889999999999999999998888776443333222223
Q ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Q 015969 159 LQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAA 238 (397)
Q Consensus 159 ~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~ 238 (397)
+.+++..|++++++.|..++++.......+++.+.+++| ++++++|+++.++.++...+..+++++..|.+++++|++
T Consensus 209 ~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~~~i~~~~g--~~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 286 (342)
T TIGR00797 209 KPDWEVLKRLLKLGLPIAFRVILESLSFALLALLVARLG--SIALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAG 286 (342)
T ss_pred CCCHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 445678999999999999999999999999999999988 568999999999999999999999999999999999999
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHH
Q 015969 239 HPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFL 293 (397)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~ 293 (397)
|.++.++..+++.++.+.++.+.+.+++++++++.++|++||++.+.+..++++.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 287 DPKRAKEVARVALKLSLLLGLVLAIILILFREFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999988887654
No 10
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=2.9e-32 Score=256.88 Aligned_cols=349 Identities=11% Similarity=0.026 Sum_probs=290.5
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 015969 2 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVN 80 (397)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (397)
++|.++.++|+ ++|+++.++.+++++++..+.+++.+++ +.+.+|+...++.+++. ..+..+..+..++..+.
T Consensus 59 ~~a~~~~ia~~--~~~~~~~~~~~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 132 (416)
T PRK15099 59 FNGVTKYVAQY--HDQPQQLRAVVGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWA 132 (416)
T ss_pred cceeeeeHHhc--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHH
Confidence 45567888887 6788889999999999999999999876 78889999888777653 24566777777788888
Q ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHhccccccccCCCchh
Q 015969 81 FPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQ 160 (397)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (397)
....+.+|+.||++.++..++++.++|+.+ +++.+.. .|+.|+++|+.+++.+..+...++++|+++.+.+..+ .+.
T Consensus 133 ~~~~~~lr~~~~~~~~~~~~~~~~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~-~~~ 209 (416)
T PRK15099 133 NLLLAILKGFRDAAGNALSLIVGSLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLK-PSW 209 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhh-ccC
Confidence 999999999999999999999999999887 4444432 3999999999999999988877777665432221111 123
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccC
Q 015969 161 AFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAG-LLDNAEIVLDSLSICMTIAGW-VFMIAVGFNAAASVRVGNELGAA 238 (397)
Q Consensus 161 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~i~~~i~~~-~~~~~~~~~~a~~~~vs~~~g~~ 238 (397)
+++.+|+++++|.|..+++....+....++.+++ ++| ++++|.|+++.++.+. ...+..+++++..|.++++ +
T Consensus 210 ~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g--~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 210 DNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYS--WDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 5678999999999999999999999999999886 777 6799999999999774 5789999999999999995 6
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccch
Q 015969 239 HPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAF 318 (397)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~ 318 (397)
|+++.++..++..+....+..+.+..++++++++.+++.+|+ .+.+.++++++.++.++...+........+.++++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999999999999999999999999999998776 444677889999998888887777777778788887
Q ss_pred hHHHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHH
Q 015969 319 VAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTL 369 (397)
Q Consensus 319 ~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 369 (397)
....++.. .++++|+++++ .+.+|..|+++++.+++.+..++..+...
T Consensus 363 ~~~~~~~~-~~l~i~l~~~l--i~~~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 363 YILAEVSQ-FTLLTGFAHWL--IPLHGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHH-HHHHHHHHHHH--HHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777666 67899999998 56789999999999999999887665554
No 11
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=9.8e-34 Score=264.74 Aligned_cols=388 Identities=47% Similarity=0.809 Sum_probs=366.2
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015969 2 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNF 81 (397)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 81 (397)
+.+..++.+|++|.++++......+++.......+++.+.++...++++..+++|+++...+..|.+...+..+......
T Consensus 85 ~~aletlcgQa~ga~~~~~lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~ 164 (473)
T KOG1347|consen 85 QLALDTLCGQAFGAKKFTALGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSF 164 (473)
T ss_pred chhhhcchHhhhcccccchhhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhh
Q 015969 82 PIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQA 161 (397)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (397)
....++|+++++.+..++.....++|+.+++++++..++|..|++++..+++.........|..... ....|..++.+
T Consensus 165 ~l~~~lq~Q~~~~~~~~~~~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~-~~~~w~~~s~~- 242 (473)
T KOG1347|consen 165 PLAKFLQAQSITLPLLVIGLVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG-CLAAWSGFSGE- 242 (473)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC-chhhhhhhhHh-
Confidence 9999999999999999999999999999999999999999999999999999999999988887654 44445555555
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChh
Q 015969 162 FSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPK 241 (397)
Q Consensus 162 ~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~ 241 (397)
++.++++++.++|..++..++.+.+.+.....|.++++..++++.++..++....++++.+++.+.+..+++.+|++|++
T Consensus 243 ~~~~~~~~~lai~s~~miclE~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~ 322 (473)
T KOG1347|consen 243 FDSWGPFFALAIPSAVMICLEWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPK 322 (473)
T ss_pred hhhHHHHHHHhhcchheeHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChh
Confidence 89999999999999999999999999999999999987789999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhHH
Q 015969 242 SCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAY 321 (397)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 321 (397)
++|.........+...+...+..++..++.+..+|++|+++.+...+..++++...++++.+..+.+..+|.|..+...+
T Consensus 323 ~ar~~~~v~~~~~~~~g~~~~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~ 402 (473)
T KOG1347|consen 323 RARVSAKVALQTSVAIGASLGTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAV 402 (473)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHchhccccCCh
Q 015969 322 VNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMDEWGDKT 391 (397)
Q Consensus 322 ~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (397)
+++.+.+++.+|+..++.+..++|..|.|.++..+..+..........+.+|++...+.+++...++++.
T Consensus 403 vnl~~yyl~G~p~g~~l~~~~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~~ 472 (473)
T KOG1347|consen 403 INLVAYYLVGAPVGLYLGFFTKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVLV 472 (473)
T ss_pred EeeeeeeEecCcceeEEEEEEecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccCC
Confidence 9999999999999999998899999999999999988888888888888999999999998877766543
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=8.7e-30 Score=240.42 Aligned_cols=357 Identities=15% Similarity=0.128 Sum_probs=314.4
Q ss_pred chhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc--CCCHHHHHHHHHHHHHHHhHHHHHHH
Q 015969 3 SATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLL--GESSAIASAAAIFVFGLIPQIFAYAV 79 (397)
Q Consensus 3 ~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~y~~~~~~~~~~~~~ 79 (397)
++..|..++.. ++|+|+.++..++.+....+.+++++++ +.+++++.+.+ |.+++..+.+.++++++.+..++..+
T Consensus 35 ~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~~la~g~~~~~~~la~~l~~i~~~~~~~~~l 113 (451)
T PF03023_consen 35 AAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVRLLAPGFSPETIELAVQLLRILAPSILFIGL 113 (451)
T ss_pred HHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 45668888888 7888999999999999999888888876 88889999887 66889999999999999999999999
Q ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCC---ccchHHHHHHHHHHHHHHHHHHHHhcccc-ccccC
Q 015969 80 NFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWG---LLGASLVLSLSWWIIVAAQFVYILLSERC-KKTWT 155 (397)
Q Consensus 80 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g---~~gaa~at~i~~~~~~~~~~~~~~~~~~~-~~~~~ 155 (397)
..++.+++|+++|...+....++.++..++...++.. ..| +.+.++|..+|.++..++.+...+|.... +.+
T Consensus 114 ~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~--~~~~~~i~~la~g~~~g~~~~~l~~l~~~~~~~~~~~~~-- 189 (451)
T PF03023_consen 114 SSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSN--SWGQENIYALAWGVLIGAIIQFLIQLPYLRRFGFRFRPK-- 189 (451)
T ss_pred HHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHH--hcCchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCccccc--
Confidence 9999999999999999999999988886665443332 355 88999999999999999998888875422 111
Q ss_pred CCchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 015969 156 GFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVF-MIAVGFNAAASVRVGNE 234 (397)
Q Consensus 156 ~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~-~~~~~~~~a~~~~vs~~ 234 (397)
+ ....+..|++++...|..+.....+....++..+.+.++.| ++++++.+.++.++.. .+..+++++..|..+++
T Consensus 190 -~-~~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G--~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~ 265 (451)
T PF03023_consen 190 -F-DWRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEG--SVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRL 265 (451)
T ss_pred -C-CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 11225799999999999999999999999999999999855 8999999999999987 55789999999999999
Q ss_pred hccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc----CchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q 015969 235 LGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFT----GGSTVADSVAELSPFLALSVILNGIQPVLSGVA 310 (397)
Q Consensus 235 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l 310 (397)
..++|.++.++..+++++....+.+|+++.++.+++++.+++. -|+|..+...+++++++++.++.++...+...+
T Consensus 266 ~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~f 345 (451)
T PF03023_consen 266 AAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVF 345 (451)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999874 356668888999999999999999999999999
Q ss_pred hhcCccchhHHHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 015969 311 VGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRT 371 (397)
Q Consensus 311 ~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 371 (397)
.+.||+|.++..++.+ .++++.+++++ .+.+|..|+++++.++..+..++....++|+
T Consensus 346 ya~~~~~~~~~~~~~~-~~lni~l~~~l--~~~~g~~Glala~sl~~~i~~~~l~~~l~r~ 403 (451)
T PF03023_consen 346 YALGDTKTPVRISVIS-VVLNIILSILL--VPFFGVAGLALATSLSAIISALLLYILLRRR 403 (451)
T ss_pred HHccCcHhHHHHHHHH-HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 68899999888 6678999999999999999999888877766
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.97 E-value=3.3e-26 Score=212.62 Aligned_cols=363 Identities=14% Similarity=0.067 Sum_probs=308.5
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHc-CC--CHHHHHHHHHHHHHHHhHHHHH
Q 015969 2 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLL-GE--SSAIASAAAIFVFGLIPQIFAY 77 (397)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~y~~~~~~~~~~~ 77 (397)
+++..|...|+..++++|+.++..+........+.+.++++ ..+++++...+ +. |++....+....+++.+.+++.
T Consensus 67 s~aFVPv~~~~~~~~~~~~~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~i 146 (518)
T COG0728 67 SSAFVPVLAEAKKKEGEEAARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFI 146 (518)
T ss_pred hhhhhHHHHHHHHcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHH
Confidence 56788889998888888888877777776777777777776 67777777444 22 3444446788889999999999
Q ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHhccccccccCCC
Q 015969 78 AVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGF 157 (397)
Q Consensus 78 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (397)
++.....+++|..++...+++..+..++.-+.....+......-..+.++|+.++-+.+.++.++.++|.+...+....
T Consensus 147 sL~al~~aiLNs~~~F~~~a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~- 225 (518)
T COG0728 147 SLSALFGAILNSRNRFFIPAFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFG- 225 (518)
T ss_pred HHHHHHHHHHhccCeechhhhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCC-
Confidence 9999999999999999999999999998887555444433222467889999999999999999999987532221111
Q ss_pred chhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhc
Q 015969 158 SLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVF-MIAVGFNAAASVRVGNELG 236 (397)
Q Consensus 158 ~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~-~~~~~~~~a~~~~vs~~~g 236 (397)
.+.+..|++++...|..+.....++...+|+.+.+.+.+| +++.++.++++.++.. .+..++++...|..|++..
T Consensus 226 --~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~G--sis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~ 301 (518)
T COG0728 226 --FKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEG--SVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAA 301 (518)
T ss_pred --CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhh
Confidence 1226899999999999999999999999999999999855 8999999999999998 6799999999999999999
Q ss_pred cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc----CchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhh
Q 015969 237 AAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFT----GGSTVADSVAELSPFLALSVILNGIQPVLSGVAVG 312 (397)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~ 312 (397)
++|.++.++..+.+++.++.+.+|.++.+.++++|+..++. -+++...+..+.+..++.+.++.....++...+.+
T Consensus 302 ~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYA 381 (518)
T COG0728 302 NGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYA 381 (518)
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998873 24566778889999999999999999999999999
Q ss_pred cCccchhHHHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 015969 313 CGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTD 372 (397)
Q Consensus 313 ~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 372 (397)
.+|+|.|+++++++ .++++.++..+ .+.+|..|.+.++.++.++...+.++..+|+.
T Consensus 382 r~d~ktP~~i~ii~-~~~n~~l~~~l--~~~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 382 REDTKTPMKIAIIS-LVVNILLNLLL--IPPLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred ccCCCcChHHHHHH-HHHHHHHHHHH--HhhccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999 68999999666 66779999999999999898888777777654
No 14
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.95 E-value=7.6e-26 Score=213.52 Aligned_cols=210 Identities=23% Similarity=0.258 Sum_probs=201.1
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 015969 161 AFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHP 240 (397)
Q Consensus 161 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~ 240 (397)
.++..|+++++++|..++++.+.....+|++++|+++ ++++|+.++++++..+...+..+++.+..+.++|++|+||+
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~--~~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~ 89 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLG--AEALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDR 89 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCch
Confidence 3468999999999999999999999999999999999 77999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhH
Q 015969 241 KSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVA 320 (397)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 320 (397)
+++++..++++..+..++++..++.+.+++++..++++++|+.+.+.+|+++..++.|+..+...+.+++|+.||+|.++
T Consensus 90 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m 169 (455)
T COG0534 90 KKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPM 169 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHh-cc-CCcchhhHHHHHHHHHHHHHHHHHHHhcCH
Q 015969 321 YVNVGCYYLIGIPIGCLLGFK-FN-LGTKGIWSGMIGGTLIQTIILVYVTLRTDW 373 (397)
Q Consensus 321 ~~~~~~~~~~~i~~~~~l~~~-~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 373 (397)
++++++ .+.|+.+++++++. .+ +|+.|+++|+.+++.+.+++..+++++++.
T Consensus 170 ~~~~~~-~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~ 223 (455)
T COG0534 170 YILLLG-NLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKR 223 (455)
T ss_pred HHHHHH-HHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcch
Confidence 999999 68999999999888 46 999999999999999999998888887763
No 15
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.95 E-value=2.5e-25 Score=211.82 Aligned_cols=208 Identities=15% Similarity=0.070 Sum_probs=191.4
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 015969 160 QAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAH 239 (397)
Q Consensus 160 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~ 239 (397)
++++++|+++++++|.+++++.+.....+|+.+++++| ++++|+++++.++.++...+..+++++..++++|++|+||
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg--~~alAa~~i~~~i~~~~~~~~~gl~~~~~~i~aq~~Ga~~ 81 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLG--PEALAGGGLGAASYSFVSIFCVGVIAAVGTLVAIRHGAGD 81 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 34578999999999999999999999999999999998 6789999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchh
Q 015969 240 PKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFV 319 (397)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 319 (397)
++++++..+.++.+...++++..++.+ +.+++..+|+.|||+.+.+.+|+++..++.++..+.....+++|+.||++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~ 160 (464)
T PRK00187 82 IEGATRLAQAGLWLAWLLALVAALLLW-NLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPV 160 (464)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 999999999999999999998877766 6799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHh----ccCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 015969 320 AYVNVGCYYLIGIPIGCLLGFK----FNLGTKGIWSGMIGGTLIQTIILVYVTLRT 371 (397)
Q Consensus 320 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 371 (397)
++.++++ .+++++++|++++. |++|+.|+++|+.+++.+..+...++++++
T Consensus 161 ~~~~~~~-~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~ 215 (464)
T PRK00187 161 MVISLAG-AVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRH 215 (464)
T ss_pred HHHHHHH-HHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999998 57899999998754 468999999999999988877666666544
No 16
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.94 E-value=1.6e-24 Score=204.55 Aligned_cols=206 Identities=14% Similarity=0.150 Sum_probs=193.8
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhh
Q 015969 163 SGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKS 242 (397)
Q Consensus 163 ~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~ 242 (397)
++.|++++++.|..++++.+.....+|+.+++++++ ++++|+.+++.++.++...+..+++.+..+.+||++|+||+|+
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 578999999999999999999999999999999953 6689999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhHHH
Q 015969 243 CKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYV 322 (397)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 322 (397)
+++..++++..++..+++.......+.+++..+++.|||+.+.+.+|+++..++.|+..+.....+.+|+.||++.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999998888889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 015969 323 NVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLR 370 (397)
Q Consensus 323 ~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 370 (397)
++++ .++++++++++.+.+++|+.|+++|+.+++.+..++..+++++
T Consensus 165 ~ii~-~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVG-NILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHH-HHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 5889999999988889999999999999999988876666654
No 17
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.94 E-value=1.1e-24 Score=207.43 Aligned_cols=205 Identities=14% Similarity=0.154 Sum_probs=192.0
Q ss_pred hhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhh
Q 015969 163 SGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKS 242 (397)
Q Consensus 163 ~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~ 242 (397)
+..|+++++++|.+++++.+.....+|+.+++++| ++++|+++++.++..+...+..+++++.++++||++|+||+|+
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG--~~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLG--KEAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 46999999999999999999999999999999998 6789999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccc--CchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhH
Q 015969 243 CKFSVIVVTSISLALSVILAILVLILRNVMSYAFT--GGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVA 320 (397)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 320 (397)
+++..+.++..++.++++.+++.+.+++++..++. .|+|+.+.+.+|+++..++.|+..+.....+++|+.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 6999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHh----ccCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 015969 321 YVNVGCYYLIGIPIGCLLGFK----FNLGTKGIWSGMIGGTLIQTIILVYVTLR 370 (397)
Q Consensus 321 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 370 (397)
+.++.+ .++++++++++.+. +++|+.|+|+|+.+++.+..++..+++.+
T Consensus 184 ~i~~~~-~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~ 236 (478)
T PRK10189 184 LINGGM-NILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMI 236 (478)
T ss_pred HHHHHH-HHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999987 68899999988764 48999999999999999988876555543
No 18
>PRK10459 colanic acid exporter; Provisional
Probab=99.94 E-value=2.1e-22 Score=194.18 Aligned_cols=328 Identities=14% Similarity=0.104 Sum_probs=264.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 015969 23 VYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISA 101 (397)
Q Consensus 23 ~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (397)
+..++.+++..+.+++.+++ +.+++++...++ +|+. ...+.+..+..++..+.....+.+|++++.+.......
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYH-NPEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-Chhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 44567778888888877766 555566555544 4443 34577888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhhhHHHHHHHHhHHHHHHHH
Q 015969 102 ATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCL 181 (397)
Q Consensus 102 ~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~ 181 (397)
..+++..++...+.+ .+.|+.+.++++.+++.+..+......+++ .+++ . +.+++..|++++++.|...++..
T Consensus 150 ~~~i~~~~~~i~~~~-~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~--~~~~---~-~~~~~~~k~ll~~~~~~~~~~~~ 222 (492)
T PRK10459 150 SAVVAGFTFAVVSAF-FWPGALAAILGYLVNSSVRTLLFGYFGRKI--YRPA---L-HFSLASVKPNLSFGAWQTAERII 222 (492)
T ss_pred HHHHHHHHHHHHHHH-HCCcHHHHHHHHHHHHHHHHHHHHHHhccc--CCcc---c-eecHHHHHHHHhhhHHHHHHHHH
Confidence 888888777766554 578999999999999988776554333222 1111 1 12346789999999999999999
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCChhhhHHHHHHHHHHHHHHHHH
Q 015969 182 EIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVF-MIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVI 260 (397)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~-~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 260 (397)
.......|..+++.+.+ .++++.|+.+.++.+... .+...+++...|..++. ++|.++.++..++..+....+++|
T Consensus 223 ~~~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p 299 (492)
T PRK10459 223 NYLNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFP 299 (492)
T ss_pred HHHHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888753 668999999999988765 44556788899999886 578899999999999999999999
Q ss_pred HHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhHHHHHHHHH
Q 015969 261 LAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGF 340 (397)
Q Consensus 261 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 340 (397)
++..+.+.++++..++.+|+ ...+...++++++..++..+.......+++.||+|..+..++.. .++.+|..+.+
T Consensus 300 ~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~-~~~~i~~~~~~-- 374 (492)
T PRK10459 300 LLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFK-TFLFIPAIVIG-- 374 (492)
T ss_pred HHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHH-HHHHHHHHHHH--
Confidence 99999999999998887655 56678899999999999999999999999999999999999887 46777877766
Q ss_pred hccCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 015969 341 KFNLGTKGIWSGMIGGTLIQTIILVYVTLR 370 (397)
Q Consensus 341 ~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 370 (397)
.+.+|..|+++++.+++.+......+...|
T Consensus 375 ~~~~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 375 GQLAGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446799999999999999988877776644
No 19
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.93 E-value=8.1e-24 Score=201.94 Aligned_cols=209 Identities=17% Similarity=0.084 Sum_probs=194.5
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 015969 161 AFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHP 240 (397)
Q Consensus 161 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~ 240 (397)
.++.+|++++++.|..++++...+...+|..+++++| ++++++++++.++..+...+..+++.+..|.+||++|++|+
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g--~~~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~ 84 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVS--ATDLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRR 84 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence 4478999999999999999999999999999999998 66899999999998888889999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhH
Q 015969 241 KSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVA 320 (397)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 320 (397)
+++++..+.++.+++.++++.+++++.+++++..+++.||++.+.+.+++++..++.++..+...+.+++|+.||++.++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 164 (456)
T PRK01766 85 ERIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTM 164 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHh----ccCCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 015969 321 YVNVGCYYLIGIPIGCLLGFK----FNLGTKGIWSGMIGGTLIQTIILVYVTLRTD 372 (397)
Q Consensus 321 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 372 (397)
+.++.+ .++++++++++++. +++|+.|+++++.+++.+..++..++.++++
T Consensus 165 ~~~~i~-~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~ 219 (456)
T PRK01766 165 VIGFLG-LLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRAR 219 (456)
T ss_pred HHHHHH-HHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhCh
Confidence 999998 57899999988753 5789999999999999999988777766543
No 20
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.93 E-value=2.7e-24 Score=204.33 Aligned_cols=208 Identities=12% Similarity=0.068 Sum_probs=196.1
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 015969 162 FSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLL-DNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHP 240 (397)
Q Consensus 162 ~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~ 240 (397)
++..|++++++.|..++++.+.+...+|+.+++++ | ++++++++++.++.++...+..+++.+..++++|++|+||+
T Consensus 8 ~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g--~~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 8 QSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVG--AEGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCH
Confidence 36789999999999999999999999999999996 6 67899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhH
Q 015969 241 KSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVA 320 (397)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 320 (397)
|++++..++++..++.++++.+++.+.+++++..+++.|+++.+.+.+|+++..++.++..+.....+.+|+.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 015969 321 YVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTD 372 (397)
Q Consensus 321 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 372 (397)
+.++.+ .++++++++++.+.+++|+.|+++++.+++.+..++..+++++++
T Consensus 166 ~~~~~~-~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~ 216 (453)
T PRK09575 166 GLMVIG-ALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSR 216 (453)
T ss_pred HHHHHH-HHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 999999 589999999998888999999999999999999888777665543
No 21
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.90 E-value=2.9e-20 Score=178.95 Aligned_cols=278 Identities=15% Similarity=0.149 Sum_probs=228.5
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHH
Q 015969 64 AIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVY 143 (397)
Q Consensus 64 ~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~ 143 (397)
...+....+..++.......++.+|+.++++......+.+ ..-....+.+.. .......++..++..........+
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 192 (480)
T COG2244 117 ALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALSIVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLIL 192 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3447788999999999999999999999999999884434 111122222211 355667777777777777766666
Q ss_pred HHhccccccccCCCchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 015969 144 ILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGF 223 (397)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~ 223 (397)
.+++++... +...++.++..|+.++.+.|.........+....|..+++++-+ .++++.|+.+.++......+..++
T Consensus 193 ~~~~~~~~~--~~~~~~~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l 269 (480)
T COG2244 193 LGKKKRGLK--RPILRFSLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASAL 269 (480)
T ss_pred HHHhhhhcc--ccccCchhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHH
Confidence 653221111 11112245899999999999999999999999999999998853 678999999999999999999999
Q ss_pred HHHHHHHHHHhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHH
Q 015969 224 NAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQ 303 (397)
Q Consensus 224 ~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 303 (397)
+.+..|.+++...++|.++.++..+++.++...++.+..+++..+++++..++.+++.. .+...+.++.+..++..+.
T Consensus 270 ~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~ 347 (480)
T COG2244 270 NRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLV 347 (480)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998766532 2777899999999999999
Q ss_pred HHHHHHHhhcCccchhHHHHHHHHHHhhHHHHHHHHHhccCCcchhhHHH
Q 015969 304 PVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGM 353 (397)
Q Consensus 304 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~ 353 (397)
......+++.|+++..++.+..+ .+.++.+++++ .+.+|..|++.++
T Consensus 348 ~~~~~~l~~~g~~~~~~~~~~~~-~i~~~~l~~~l--i~~~g~~g~~~a~ 394 (480)
T COG2244 348 SLTSSLLQALGKQRLLLLISLIS-ALLNLILNLLL--IPRFGLIGAAIAT 394 (480)
T ss_pred HHHHHHHHHcCcchhhHHHHHHH-HHHHHHHHhHH--HHhhhhhhHHHHH
Confidence 99999999999999999999998 57888888888 6677999999888
No 22
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.85 E-value=1.9e-19 Score=165.65 Aligned_cols=194 Identities=18% Similarity=0.221 Sum_probs=179.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhHHHHHHHHHH
Q 015969 174 ASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSI 253 (397)
Q Consensus 174 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~ 253 (397)
|.+++++...+...+|+.+++++| ++++++++++.++..+...+..+++++..|.+++++|++|+|++++..+.....
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g--~~~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLG--PVDLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 778889999999999999999998 668999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhHH
Q 015969 254 SLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIP 333 (397)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 333 (397)
...++++.+++.+++++++.++++.|++..+.+..+++++.++.++.++.....+++|+.||++.+++.++.+ .+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~-~~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIG-NVINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH-HHHHHH
Confidence 9999999999999999999999987888899999999999999999999999999999999999999999998 477888
Q ss_pred HHHHHHH-hcc-CCcchhhHHHHHHHHHHHHHHHHHHHh
Q 015969 334 IGCLLGF-KFN-LGTKGIWSGMIGGTLIQTIILVYVTLR 370 (397)
Q Consensus 334 ~~~~l~~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~ 370 (397)
.++.+.. ..+ .|+.|+++++.+++.+..++..++.++
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888876 456 779999999999999988887766655
No 23
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.84 E-value=5.8e-21 Score=156.03 Aligned_cols=162 Identities=22% Similarity=0.386 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhHHHHHHHHHH
Q 015969 174 ASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSI 253 (397)
Q Consensus 174 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~ 253 (397)
|..++++.+.+...+++.+++++| ++++++++++.++.++...+..|++++..+.+||++|++|+|++++..++++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g--~~~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLG--PEALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCT--TCCCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 889999999999999999999997 668999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhHH
Q 015969 254 SLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIP 333 (397)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 333 (397)
+..++++.+++.+.+++++.++|+.|+|+.+.+.+++++..++.++.++.....+++|+.||++.+++.++.+.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998899999
Q ss_pred HHHH
Q 015969 334 IGCL 337 (397)
Q Consensus 334 ~~~~ 337 (397)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9875
No 24
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.57 E-value=3.7e-13 Score=130.04 Aligned_cols=196 Identities=16% Similarity=0.149 Sum_probs=161.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccCChhhhHHH
Q 015969 169 LKLSTASAVMLCLEIWYYQIIVLIAGLL-DNAEIVLDSLSICMTIAGWVFMIA-VGFNAAASVRVGNELGAAHPKSCKFS 246 (397)
Q Consensus 169 l~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~i~~~i~~~~~~~~-~~~~~a~~~~vs~~~g~~~~~~~~~~ 246 (397)
.|-+.|..+++........++..++++. | .++.++++.+..+..+...+. .|++++....++|+.|++|+++.++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg--~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~ 79 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILG--AEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKI 79 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHH
Confidence 4668899999999999999999999985 6 678999999999988887775 49999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHH
Q 015969 247 VIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGC 326 (397)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 326 (397)
.+.+..+....+++.+++++++.+++...+.+|++.. .+++++.+..++..+.......+|+.+|.+..+..+..+
T Consensus 80 ~~~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~ 155 (488)
T TIGR02900 80 LKVSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERSL----YSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIE 155 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhHH----HHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHH
Confidence 9999999999999999999999999988776666543 457788889999999999999999999999999999888
Q ss_pred HHHhhHHHHHHHHH-----hccCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 015969 327 YYLIGIPIGCLLGF-----KFNLGTKGIWSGMIGGTLIQTIILVYVTLRT 371 (397)
Q Consensus 327 ~~~~~i~~~~~l~~-----~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 371 (397)
. ++++.+...+.. ..+.++.|..+++.++..+..+...++++++
T Consensus 156 ~-i~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~ 204 (488)
T TIGR02900 156 Q-IVRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRK 204 (488)
T ss_pred H-HHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 455444333322 2345677888888888888888766555443
No 25
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.57 E-value=3.8e-13 Score=126.66 Aligned_cols=207 Identities=13% Similarity=0.157 Sum_probs=189.6
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccCCh
Q 015969 162 FSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGW-VFMIAVGFNAAASVRVGNELGAAHP 240 (397)
Q Consensus 162 ~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~-~~~~~~~~~~a~~~~vs~~~g~~~~ 240 (397)
..+.|++.+++.|..+....+.....++..+.||+| +.++++.+++++..+. .+.+..+++.+..+..+|++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG--~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLG--NLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhcccc--chHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 578999999999999999999999999999999999 4589999999888776 4577889999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhH
Q 015969 241 KSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVA 320 (397)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 320 (397)
+......+++.........+.+. ++...+++...+++||++...+..|.++..+..+...........+|+.++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~-l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISL-LILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHH-HHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 99999999999999888888765 55577999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 015969 321 YVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTD 372 (397)
Q Consensus 321 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 372 (397)
+++..+ ..++++++|++.+.+++|..|+.++..+++.+.......+.....
T Consensus 181 ~~~~~~-~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~ 231 (473)
T KOG1347|consen 181 VIGLVA-LVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSG 231 (473)
T ss_pred HHHHHH-HHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecC
Confidence 999998 689999999999999999999999999999999888777665543
No 26
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.49 E-value=2.7e-11 Score=107.48 Aligned_cols=217 Identities=16% Similarity=0.163 Sum_probs=159.8
Q ss_pred chhhhHHHhhhCCCCc--chHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 015969 3 SATETLCGQAYGAQKY--DMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVN 80 (397)
Q Consensus 3 ~~~~~~is~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (397)
.|....+.|+..+.+. ++.+.+.........+.+++..+.... ....+.++... .+........++....
T Consensus 54 ~G~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 125 (273)
T PF01943_consen 54 LGLSQAIVRFIAEYKDKKELRSAYFSSVLFLLLIFSLIFLLILLI----ASFFGNPSLSL----ILIILALLILILSSLS 125 (273)
T ss_pred hhhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHcCCchHHH----HHHHHHHHHHHHHHHH
Confidence 4566666666666554 344555555555544444444333222 22334333221 2222222222578888
Q ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHhccccccccCCCchh
Q 015969 81 FPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQ 160 (397)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (397)
....+++++.++.+.....++...++..++..+++.. +.+..+...+..++..+..++...+.+|+.+ . +...+
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~ 199 (273)
T PF01943_consen 126 SVFSGLLQGLQRFKYIAISNIISSLLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLR--P---RFSFF 199 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc--c---ccccc
Confidence 9999999999999999999999999988877676653 4458899999999999998888888876542 1 12223
Q ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015969 161 AFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNE 234 (397)
Q Consensus 161 ~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~ 234 (397)
+++..|++++.+.|..+..+...+....|..+++++.+ .+++|.|+++.++......+..++.++..|.+++.
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 200 SKKFFKEILRFGLPLFLSSLLSWLYSQIDRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35799999999999999999999999999999998864 67899999999999999999999999999999985
No 27
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.49 E-value=9.9e-12 Score=120.53 Aligned_cols=197 Identities=12% Similarity=0.103 Sum_probs=153.8
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhh-cCChHHHH-HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHhhccCChhhh
Q 015969 168 FLKLSTASAVMLCLEIWYYQIIVLIAGL-LDNAEIVL-DSLSICMTIAGWVFMIAV--GFNAAASVRVGNELGAAHPKSC 243 (397)
Q Consensus 168 ~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-a~~~i~~~i~~~~~~~~~--~~~~a~~~~vs~~~g~~~~~~~ 243 (397)
+.|-+.-..+.++...+...+|..++++ +| +++. ++++.+.++......+.. |++.+..|...++.+++ |++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG--~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~ 77 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFG--AGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEA 77 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHH
Confidence 4566677778888899999999999998 67 4467 799999999877765543 67888777776654333 677
Q ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhcc--cCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhH
Q 015969 244 KFSVIVVTSISLALS-VILAILVLILRNVMSYAF--TGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVA 320 (397)
Q Consensus 244 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~l~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 320 (397)
++....+......+. ++.+++.+++++++..++ +.|++..+.+.++++++.++.++..+.....+++|+.||.+.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 157 (502)
T TIGR01695 78 RRAFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPS 157 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHH
Confidence 777777666665444 445777888999999988 34677788999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhHHHHHHHHHhccCCcchhh--HHHHHHHHHHHHHHHHHHHhc
Q 015969 321 YVNVGCYYLIGIPIGCLLGFKFNLGTKGIW--SGMIGGTLIQTIILVYVTLRT 371 (397)
Q Consensus 321 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~--~a~~~~~~~~~~~~~~~~~~~ 371 (397)
+.+++.. ++.+...+++ .+++|..|++ +++.++..+..++..++.+++
T Consensus 158 ~~~i~~~-i~~i~~~~~~--~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 207 (502)
T TIGR01695 158 FSPILFN-IGVILSLLFF--DWNYGQYSLALAIGVLIGGVAQLLIQLPFLRKA 207 (502)
T ss_pred HHHHHHH-HHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999885 4444433333 5678999988 999999999888776666554
No 28
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.34 E-value=2.8e-13 Score=110.49 Aligned_cols=112 Identities=21% Similarity=0.340 Sum_probs=107.2
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 015969 2 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVN 80 (397)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (397)
++|.++.+||++|++|+|++++..+.++.+..+.+++.+++ +.+.+++..+++.|+|+.+.+.+|+++..++.|+..+.
T Consensus 49 ~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (162)
T PF01554_consen 49 ATALQILISQNIGAGDYKRAKKVVRQGLLLSLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALF 128 (162)
T ss_dssp HHHHHHHHCCCCCSSSTTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccccccccchhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHH
Confidence 57899999999999999999999999999999999999977 88899999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCcchHHHHHHHHH-HHHHHHHHH
Q 015969 81 FPIQKFLQAQSIISPSAYISAATL-VVHVLLSWV 113 (397)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l~~i 113 (397)
...++++|+.|+++.+++.++.+. ++|++++++
T Consensus 129 ~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l~yl 162 (162)
T PF01554_consen 129 FVFSGILQGIGRTKIAMYISIISFWIINIPLAYL 162 (162)
T ss_dssp HHHCCCCGCCSTHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCcHHHHHHHHHHHHHHHHHhHHhC
Confidence 999999999999999999999999 999998874
No 29
>PRK15099 O-antigen translocase; Provisional
Probab=99.33 E-value=1.4e-10 Score=109.60 Aligned_cols=192 Identities=17% Similarity=0.127 Sum_probs=145.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHH-HHHhhcCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCChhhhHHH
Q 015969 169 LKLSTASAVMLCLEIWYYQIIV-LIAGLLDNAEIVLDSLSICMTIAGWVFMI-AVGFNAAASVRVGNELGAAHPKSCKFS 246 (397)
Q Consensus 169 l~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~a~~~i~~~i~~~~~~~-~~~~~~a~~~~vs~~~g~~~~~~~~~~ 246 (397)
.|-+......+........... .+...+| .++.+..+....+..+...+ ..|++++....++|+ ++|+++.++.
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg--~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~ 79 (416)
T PRK15099 4 AKASLWTAASTLVKIGAGLLVVKLLAVSFG--PAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAV 79 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHH
Confidence 4445555555555554444444 3444455 56788888888888777666 778888888888888 6889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHH
Q 015969 247 VIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGC 326 (397)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~ 326 (397)
...++......+++.+++++.+.+++...+.+||+. .....+..+..++..+.....+.+|+.||++.++...+.+
T Consensus 80 ~~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~ 155 (416)
T PRK15099 80 VGTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY----QGVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVG 155 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999888766652 2446666666667788888999999999999999999888
Q ss_pred HHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 015969 327 YYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRT 371 (397)
Q Consensus 327 ~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 371 (397)
.++++.+ +++.... .|+.|+++++.+++.+..+...+.++|+
T Consensus 156 -~~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~ 197 (416)
T PRK15099 156 -SLIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRR 197 (416)
T ss_pred -HHHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4677666 3333222 3999999999999999877656555543
No 30
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.32 E-value=2.7e-09 Score=93.52 Aligned_cols=210 Identities=17% Similarity=0.185 Sum_probs=150.0
Q ss_pred hhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015969 4 ATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPI 83 (397)
Q Consensus 4 ~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 83 (397)
|....+.+ ..++|+++.++..+.......+.+++..++ ...+...++ +++. ..++....+..+........
T Consensus 40 g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~ 110 (251)
T PF13440_consen 40 GLRQSLVR-SAARDKQDIRSLLRFSLLVSLLLAVILAIL---AILIAYFFG-DPEL----FWLLLLLALAIFFSALSQLF 110 (251)
T ss_pred HHHHHHHH-hhccCHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhC-ChhH----HHHHHHHHHHHHHHHHHHHH
Confidence 44445555 234556666666666665544444444333 112222333 3332 24466777888889999999
Q ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHhccccccccCCCchhhhh
Q 015969 84 QKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFS 163 (397)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (397)
++.+++++|.+..........+...++..++.+ .+.+..+..++..+++++..++.....+++. +. +. +.+
T Consensus 111 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~---~~~ 181 (251)
T PF13440_consen 111 RSILRARGRFRAYALIDIVRSLLRLLLLVLLLY-LGLNLWSILLAFIISALLALLISFYLLRRKL--RL---SF---KFS 181 (251)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHHHHHHHhcccc--CC---Cc---hhh
Confidence 999999999999999999999988555544443 3458889999999999988877665333221 11 11 112
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 015969 164 GLWDFLKLSTASAVMLCLEIWYYQIIVLIAGL-LDNAEIVLDSLSICMTIAGWVF-MIAVGFNAAASVRVGNE 234 (397)
Q Consensus 164 ~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~i~~~i~~~~~-~~~~~~~~a~~~~vs~~ 234 (397)
..| .++.+.|....+.........|..+++. +| .+++|.|+++.++..... .+..++++...|.++|.
T Consensus 182 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~--~~~~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 182 WRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG--PEAVGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 334 7999999999999999999999999998 65 678999999999999888 89999999999999873
No 31
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.30 E-value=2.9e-09 Score=100.13 Aligned_cols=145 Identities=15% Similarity=0.146 Sum_probs=128.7
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCC----CHHHHHHHHHHHHHHHhHHHH
Q 015969 2 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGE----SSAIASAAAIFVFGLIPQIFA 76 (397)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~y~~~~~~~~~~ 76 (397)
++.+-|.+||...++|.++.++..+.++.++.++.++.++. ..+++|+...+.. +++......+-++..++++++
T Consensus 289 ~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~ 368 (518)
T COG0728 289 STVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIP 368 (518)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHH
Confidence 45667889999999999999999999999999999999976 8999999997732 455566777889999999999
Q ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHhcc
Q 015969 77 YAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSE 148 (397)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~ 148 (397)
..+..++...+.+.||+|.|+++.+++.++|+.+++.+.. .+|..|.++++.++.++...+.++.++|+.
T Consensus 369 ~~L~~ll~~~FYAr~d~ktP~~i~ii~~~~n~~l~~~l~~--~~~~~giala~s~a~~~~~~ll~~~l~k~~ 438 (518)
T COG0728 369 FALVKLLSRVFYAREDTKTPMKIAIISLVVNILLNLLLIP--PLGHVGLALATSLAAWVNALLLYYLLRKRL 438 (518)
T ss_pred HHHHHHHHHHHHHccCCCcChHHHHHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999966554 478888999999999999999888887764
No 32
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.29 E-value=6.2e-10 Score=105.67 Aligned_cols=145 Identities=16% Similarity=0.131 Sum_probs=131.6
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcC----CCHHHHHHHHHHHHHHHhHHHH
Q 015969 2 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLG----ESSAIASAAAIFVFGLIPQIFA 76 (397)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~y~~~~~~~~~~ 76 (397)
++..-|..||...++|.++.++.+++++.....+.++.++. +.+++|+...+. -++|..+...+.++++++++|+
T Consensus 255 ~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~ 334 (451)
T PF03023_consen 255 STVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPF 334 (451)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHH
Confidence 34556788999999999999999999999999999999976 899999999773 2677788899999999999999
Q ss_pred HHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHhcc
Q 015969 77 YAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSE 148 (397)
Q Consensus 77 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~ 148 (397)
..+...+...+.+.+|+|.+++.++++.++|++++.++.. .+|..|.++|+.++..+..+...+.++|+.
T Consensus 335 ~~l~~ll~r~fya~~~~~~~~~~~~~~~~lni~l~~~l~~--~~g~~Glala~sl~~~i~~~~l~~~l~r~~ 404 (451)
T PF03023_consen 335 YALNDLLSRVFYALGDTKTPVRISVISVVLNIILSILLVP--FFGVAGLALATSLSAIISALLLYILLRRRL 404 (451)
T ss_pred HHHHHHHHHHHHHccCcHhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999999999999999999999977765 479999999999999999999988887764
No 33
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.91 E-value=1.3e-06 Score=83.98 Aligned_cols=204 Identities=12% Similarity=0.030 Sum_probs=156.4
Q ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh--cCChHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhccCCh
Q 015969 164 GLWDFLKLSTASAVMLCLEIWYYQIIVLIAGL--LDNAEIVLDSLSICMTIAGWVF-MIAVGFNAAASVRVGNELGAAHP 240 (397)
Q Consensus 164 ~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~a~~~i~~~i~~~~~-~~~~~~~~a~~~~vs~~~g~~~~ 240 (397)
.-+++++.......+.+...+...-|.+++.. +.+ .++-|.|++++++.++.. .+...+-.+.....++...+++.
T Consensus 251 fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~ 329 (549)
T PF04506_consen 251 FDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNS 329 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCc
Confidence 35788999999999999999999999988888 554 567899999999998886 56778888888888888765533
Q ss_pred ---------hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh
Q 015969 241 ---------KSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAV 311 (397)
Q Consensus 241 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~ 311 (397)
+++.+.....++....+++++..+....++.+..++.++.-....+...++.++...|+.+++-+..+..+
T Consensus 330 ~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~ 409 (549)
T PF04506_consen 330 KKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVF 409 (549)
T ss_pred hhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHH
Confidence 34556677777777777777766666666777777654433333456779999999999999999999999
Q ss_pred hcCccchhHHHH---HHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 015969 312 GCGWQAFVAYVN---VGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLR 370 (397)
Q Consensus 312 ~~g~~~~~~~~~---~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 370 (397)
+..+++.....+ .+. .++.+..+|++... ++|..|..+|..+.+.++.+....++++
T Consensus 410 s~a~~~~l~~~~~~m~~~-S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 410 SVASESQLDRYNYWMVVF-SAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HhCCHHHHHHHHHHHHHH-HHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 988776543322 222 24567778888665 7899999999999999998887777655
No 34
>PRK10459 colanic acid exporter; Provisional
Probab=98.84 E-value=2.9e-06 Score=82.13 Aligned_cols=137 Identities=15% Similarity=0.090 Sum_probs=111.9
Q ss_pred hhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015969 5 TETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPI 83 (397)
Q Consensus 5 ~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~ 83 (397)
..|..|+. ++|+++.++.+++++.....++++..+. ...+++++.++..++ ...+...++++++...+..+....
T Consensus 268 ~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~ 343 (492)
T PRK10459 268 AFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPI 343 (492)
T ss_pred HhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555664 6677888999999999999999988865 788899988775443 346778899999999999999999
Q ss_pred HHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHhc
Q 015969 84 QKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLS 147 (397)
Q Consensus 84 ~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~ 147 (397)
...+++.|++|.+...+++.+++++...+++.. .+|+.|+++|+.+++.+...+..++..|+
T Consensus 344 ~~~l~a~g~~~~~~~~~~~~~~~~i~~~~~~~~--~~G~~g~a~a~~i~~~~~~~~~~~~~~~~ 405 (492)
T PRK10459 344 GSLLLAKGRADLSFKWNVFKTFLFIPAIVIGGQ--LAGLIGVALGFLLVQIINTILSYFLMIKP 405 (492)
T ss_pred HHHHHHcCccchhHHHHHHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999888888887776655543 46999999999999999888887777543
No 35
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.65 E-value=4.9e-05 Score=69.03 Aligned_cols=300 Identities=11% Similarity=0.062 Sum_probs=183.0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHH-HhC-CCccchHHHHHHHHHHHHHHHHHHHH
Q 015969 68 FGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIF-KLG-WGLLGASLVLSLSWWIIVAAQFVYIL 145 (397)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~-~~~-~g~~gaa~at~i~~~~~~~~~~~~~~ 145 (397)
.+...+...-.+...+.-..|...+.+.-+...-+..++.-++.+..+. +.+ .++..-|+|.......-.+++.++..
T Consensus 127 ~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf 206 (530)
T KOG2864|consen 127 FIIGLSIVVELLSEPLYIVSQCGLKVQLRAIAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYF 206 (530)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3334444444445555556666666666666666666666444444333 222 34555566666666555554444444
Q ss_pred hccc-cccc---------cCCCc-hh-hhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHHH
Q 015969 146 LSER-CKKT---------WTGFS-LQ-AFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDN-AEIVLDSLSICMTI 212 (397)
Q Consensus 146 ~~~~-~~~~---------~~~~~-~~-~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a~~~i~~~i 212 (397)
+.+. .+.. .++.. .+ ..-.-++..+.......+.+..++...-+..+++.... .-.+-|.|.++++.
T Consensus 207 ~~~~s~~~~~~~~r~Sdllpk~~~n~~~~ffd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~ 286 (530)
T KOG2864|consen 207 YIRGSIPETEPFSRFSDLLPKVSENERGIFFDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNY 286 (530)
T ss_pred HHcCCcccccchhhhhhhccCCCCCCccccccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhh
Confidence 3322 1000 00000 00 01123456666666666666677666666655553210 01256789999998
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhhccCChhhhHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHH
Q 015969 213 AGWVF-MIAVGFNAAASVRVGNELGAAHPKSCKFSV---IVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAE 288 (397)
Q Consensus 213 ~~~~~-~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 288 (397)
.++.. .+...+-.......+|...+++.|+.|+.. ...++....+++.+..+....+++...+++++.-....+..
T Consensus 287 GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~ 366 (530)
T KOG2864|consen 287 GSLLARLIFRPIEESSYIYFARLLSRDNQENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSL 366 (530)
T ss_pred hhHHHHHHhChhHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchH
Confidence 87775 667888999999999988888887777664 44555566666555555556666667766543322333456
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHH---HHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHH
Q 015969 289 LSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVN---VGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILV 365 (397)
Q Consensus 289 ~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~---~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~ 365 (397)
.+++++...++.+++-+..+..++.++.+....-+ +.. -+..+..+|++... +|..|.-+|-.+.+.++.+...
T Consensus 367 lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~~~n~~mlaf-SviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~ 443 (530)
T KOG2864|consen 367 LLSWYCLYIPFLAINGITEAFAFAVATSRQIDKHNKFMLAF-SVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSL 443 (530)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHhccHHHHHhcccchhHH-HHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999887665432221 122 24567888999654 4778988888888888766655
Q ss_pred HHHHh
Q 015969 366 YVTLR 370 (397)
Q Consensus 366 ~~~~~ 370 (397)
.++++
T Consensus 444 ~fI~~ 448 (530)
T KOG2864|consen 444 RFIRH 448 (530)
T ss_pred HHHHH
Confidence 55544
No 36
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=98.63 E-value=2.7e-06 Score=82.17 Aligned_cols=126 Identities=21% Similarity=0.204 Sum_probs=110.1
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHH
Q 015969 2 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVN 80 (397)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~ 80 (397)
+...-|.+||...++|.++.++...+++......+++..+. ..+++|+...+..++.. .+...+.+..+..++..+.
T Consensus 270 ~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~~--~~~~~l~il~~~~~~~~~~ 347 (480)
T COG2244 270 NRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKYA--SAAPILQLLALAGLFLSLV 347 (480)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCccc--chhHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999999999999999999976 88888999977555432 2667788999999999999
Q ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHH
Q 015969 81 FPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLS 132 (397)
Q Consensus 81 ~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~ 132 (397)
......+++.|+.+.....+.++.++|++++.+++.. .|..|++.++ .+
T Consensus 348 ~~~~~~l~~~g~~~~~~~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 348 SLTSSLLQALGKQRLLLLISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHcCcchhhHHHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 9999999999999999999999999999999999764 6888999888 44
No 37
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.59 E-value=1.1e-05 Score=64.10 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=73.6
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHh
Q 015969 67 VFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILL 146 (397)
Q Consensus 67 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~ 146 (397)
+++.+++.++..+.......+++.||+|.....+.++.++|++++++++. ++|..|+++|+.+++.+...+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~--~~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIP--RFGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999965 4899999999999999999998888877
Q ss_pred cc
Q 015969 147 SE 148 (397)
Q Consensus 147 ~~ 148 (397)
+-
T Consensus 80 ~~ 81 (146)
T PF14667_consen 80 KI 81 (146)
T ss_pred Hh
Confidence 63
No 38
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.30 E-value=0.00023 Score=62.82 Aligned_cols=187 Identities=20% Similarity=0.202 Sum_probs=111.7
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHh-hcCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCChhhhHHHH
Q 015969 170 KLSTASAVMLCLEIWYYQIIVLIAG-LLDNAEIVLDSLSICMTIAGWVFMI-AVGFNAAASVRVGNELGAAHPKSCKFSV 247 (397)
Q Consensus 170 ~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~i~~~i~~~~~~~-~~~~~~a~~~~vs~~~g~~~~~~~~~~~ 247 (397)
|-+......+............++. .+| .++.+.++....+.++...+ ..|+.++..-..+++..+ .++.++..
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~--~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLG--PEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC--HHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 3344444555555554555444444 445 67899999999998888776 678888888777776433 23333444
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHH
Q 015969 248 IVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCY 327 (397)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 327 (397)
..........++.......... .+. +++.... +........++.........++++.++.+.....++...
T Consensus 79 ~~~~~~~~~~~~i~~~~~~~~~-----~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLLILLIAS-----FFG-NPSLSLI---LIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS 149 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HcC-CchHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444333333333222222222 333 3332221 122222222577788888999999999998888888874
Q ss_pred HHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhc
Q 015969 328 YLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRT 371 (397)
Q Consensus 328 ~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 371 (397)
+..+.....+... ..+..+...+..++..+...+.....+|+
T Consensus 150 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (273)
T PF01943_consen 150 -LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRK 191 (273)
T ss_pred -HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444333 23478888888888888877766666543
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.30 E-value=4.2e-06 Score=66.61 Aligned_cols=79 Identities=15% Similarity=0.228 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHH
Q 015969 290 SPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTL 369 (397)
Q Consensus 290 l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 369 (397)
+++++++.++.++.....+.+++.||+|..++.++.+ .++++++++.+ .|++|..|+++++.+++.....+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~-~~v~i~~~~~l--i~~~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIG-AIVNIILNYIL--IPRFGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH-HHHHHHHHHHH--HHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999999999999 68999999999 77889999999999999999988888877
Q ss_pred hc
Q 015969 370 RT 371 (397)
Q Consensus 370 ~~ 371 (397)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 75
No 40
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.22 E-value=0.0017 Score=56.69 Aligned_cols=189 Identities=12% Similarity=0.096 Sum_probs=123.3
Q ss_pred hhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh
Q 015969 162 FSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGL-LDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHP 240 (397)
Q Consensus 162 ~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~ 240 (397)
....+++.++-+|..+++....+.-.+.+.-+++ -.+..+.+|+|+++..+.-++..+...+-.....++.+. .
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s~-----r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNSK-----R 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcch-----h
Confidence 3578899999999999999998888887777776 344456799999999999999999888877776666442 2
Q ss_pred hhhHHHHHHHHHHHHHHH-HHHHHH-HHHhhhh-hhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccc
Q 015969 241 KSCKFSVIVVTSISLALS-VILAIL-VLILRNV-MSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQA 317 (397)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~-i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~ 317 (397)
+ |+....+......+. ....++ .--+.+. +-.+++-||++.+.+...+.++.+.-+++++.....+++-=.+++.
T Consensus 82 s--rr~~vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 82 S--RRKAVLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred h--hHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 2 222222222222222 111111 1122222 2445577899999999999999999999999999998887556777
Q ss_pred hhHHHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHH
Q 015969 318 FVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTL 358 (397)
Q Consensus 318 ~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~ 358 (397)
.....++.. .+..+.....+.....-....+++.....+.
T Consensus 160 iV~~aSI~~-v~~qvV~v~~ll~~~l~~~~pllipil~~y~ 199 (345)
T PF07260_consen 160 IVGSASIAD-VIAQVVLVAILLSMHLEPQDPLLIPILALYA 199 (345)
T ss_pred EeehHHHHH-HHHHHHHHHHHHccccCccccHHHHHHHHHH
Confidence 666666665 3444444444432221123445554444333
No 41
>COG4267 Predicted membrane protein [Function unknown]
Probab=98.12 E-value=0.0051 Score=54.88 Aligned_cols=306 Identities=11% Similarity=0.029 Sum_probs=157.8
Q ss_pred hhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015969 6 ETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQK 85 (397)
Q Consensus 6 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 85 (397)
++.+|...=+||.+++.......+.+....+.+++.+ .-..+.|.... |=......+...+..=....
T Consensus 85 TRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~-------vf~~~~~~si~-----yk~l~~~~FV~m~~~Wi~~i 152 (467)
T COG4267 85 TRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLI-------VFFVNNQYSIV-----YKILACALFVGMSLVWILMI 152 (467)
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH-------hhhhcCchhHH-----HHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555544444444444444333321 11112232221 12233334444455555567
Q ss_pred HHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHhccc-cccccCCCchhhhhh
Q 015969 86 FLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSER-CKKTWTGFSLQAFSG 164 (397)
Q Consensus 86 ~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 164 (397)
++.+.++.|...+.-.++.++...+..++- .++..|..++..+|..+.......+..|.-+ .++.-.++- ..
T Consensus 153 FlS~lK~y~~iv~sF~iG~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~~i~FdFL----~~ 225 (467)
T COG4267 153 FLSGLKKYKLIVLSFFIGYVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILRYFKSSRRIGFDFL----LY 225 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccccceehh----hh
Confidence 889999999999999999999988887755 3699999999999999999888877776421 111111111 11
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHH------HHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH
Q 015969 165 LWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLD------SLSICMTIAGWVFMIA-----VGFNAAASVRVGN 233 (397)
Q Consensus 165 ~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a------~~~i~~~i~~~~~~~~-----~~~~~a~~~~vs~ 233 (397)
.++. ....+-.....+...+|+++.=.-+++++..+ -|-+..-.......|. ..+-+..++.--+
T Consensus 226 ~~~y----~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~lET~F~~~Yk~ 301 (467)
T COG4267 226 RRKY----PSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLISLETDFQENYKE 301 (467)
T ss_pred hhcc----hHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeeeeeehHHHHHHH
Confidence 1111 11122223334444445443211111111111 1222222222222221 1122222222111
Q ss_pred h----hc-------cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhH
Q 015969 234 E----LG-------AAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGI 302 (397)
Q Consensus 234 ~----~g-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~ 302 (397)
. .| +++.++.....++.+.-..-+-..+++.++++++.+..+++-++...+. +.+-..+...+..
T Consensus 302 ~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~~~l~l----F~vd~lg~s~~i~ 377 (467)
T COG4267 302 YYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSEYYLDL----FYVDVLGVSCQIV 377 (467)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHH----HHHHHHHHHHHHH
Confidence 1 11 1345566677778888888888899999999999999999877654443 4444444444444
Q ss_pred HHHHHHHHhhcCccchhHHHHHHHHHHhhHHHHHHHH
Q 015969 303 QPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLG 339 (397)
Q Consensus 303 ~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~ 339 (397)
...+-++.-=..+-+..+..+.+- .+.|-.+.++..
T Consensus 378 f~~ll~i~lyfd~r~i~l~~t~~f-li~N~ilT~i~l 413 (467)
T COG4267 378 FMSLLNIFLYFDYRRIALELTALF-LISNGILTFIFL 413 (467)
T ss_pred HHHHHHHHHHHHhhhhhhhhhhHH-HHHhHHHHHHHH
Confidence 333333333344555555555444 345555555543
No 42
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.06 E-value=0.0035 Score=54.83 Aligned_cols=218 Identities=14% Similarity=0.075 Sum_probs=121.9
Q ss_pred HhHHHHHH-HcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 015969 44 IFSKQILL-LLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGL 122 (397)
Q Consensus 44 ~~~~~i~~-~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~ 122 (397)
.+...+++ .++.+|++.+.+...+.++.+--++..+...++|++-=..++......++...+.-+++..+++. .+...
T Consensus 108 pLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~iV~~aSI~~v~~qvV~v~~ll~-~~l~~ 186 (345)
T PF07260_consen 108 PLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWIVGSASIADVIAQVVLVAILLS-MHLEP 186 (345)
T ss_pred chHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeEeehHHHHHHHHHHHHHHHHHc-cccCc
Confidence 34444544 56889999999999999999888899999999998886666665555555544444444444442 11111
Q ss_pred -cc---hHHHHHHHHHHHHHHHH-HHHHhccccccccCCCchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh-c
Q 015969 123 -LG---ASLVLSLSWWIIVAAQF-VYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGL-L 196 (397)
Q Consensus 123 -~g---aa~at~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~ 196 (397)
.. -.++...+..+-+-+.. -|...-.+..+...+.++.+...+++++++.+|.+.....+...-.+.+.++++ +
T Consensus 187 ~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~F~~PL~~~~~tq~~SrplVnl~vsR~l 266 (345)
T PF07260_consen 187 QDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLKFWWPLALVLATQRISRPLVNLFVSRDL 266 (345)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 11 11333333332222222 222122222222223334455679999999999999999999999999989888 5
Q ss_pred CCh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhh--------HHHHHHHHHHHHHHHHHHHHHH
Q 015969 197 DNA---EIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSC--------KFSVIVVTSISLALSVILAILV 265 (397)
Q Consensus 197 ~~~---~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ 265 (397)
++. +++++...+...+.-..+...+-+- +..|..-+ .++.++. +...++....++.+++..+..+
T Consensus 267 ~gs~a~~~avavl~~~ypvgh~~y~w~~~~r-~~~paf~~---~~~~~~~~~~~~~v~~~~~~kf~~~c~~~sl~~~f~~ 342 (345)
T PF07260_consen 267 SGSQAATEAVAVLTATYPVGHMPYGWLTELR-AVYPAFDK---NNPQNKLRNCGNPVTQSHISKFVVLCLLLSLALCFVM 342 (345)
T ss_pred CCcccchhhhhhhccccCCCcCcchhHHhHH-hhCchhhc---cCcccccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 532 2455555544443332222221111 11222211 1222333 2356666666666666665554
Q ss_pred H
Q 015969 266 L 266 (397)
Q Consensus 266 ~ 266 (397)
+
T Consensus 343 f 343 (345)
T PF07260_consen 343 F 343 (345)
T ss_pred h
Confidence 4
No 43
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.95 E-value=0.0033 Score=54.77 Aligned_cols=161 Identities=20% Similarity=0.262 Sum_probs=100.6
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015969 191 LIAGLLDNAEIVLDSLSICMTIAGWVFMI-AVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILR 269 (397)
Q Consensus 191 ~~~~~~~~~~~~~a~~~i~~~i~~~~~~~-~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (397)
.+...++ .++.|.|+....+..+...+ ..|+.+...- ..++|+++.++.............++..++ .
T Consensus 10 ~lar~l~--~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 78 (251)
T PF13440_consen 10 LLARYLG--PEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL----A 78 (251)
T ss_pred HHHHHCC--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH----H
Confidence 3444455 66899999999988887766 3444443332 233566666666666665544444443333 2
Q ss_pred hhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhHHHHHHHHHhccCCcchh
Q 015969 270 NVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGI 349 (397)
Q Consensus 270 ~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~ 349 (397)
..+...+ .+++. ..++....+..++..........+++.+|.+........... ..+.....+. ..+.+..+.
T Consensus 79 ~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~ 151 (251)
T PF13440_consen 79 ILIAYFF-GDPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSL-LRLLLLVLLL-YLGLNLWSI 151 (251)
T ss_pred HHHHHHh-CChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-HHHHHHHHHH-HHHhhHHHH
Confidence 2222333 33332 233556667778888899999999999999999888888853 3333333332 223378888
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 015969 350 WSGMIGGTLIQTIILVYVTL 369 (397)
Q Consensus 350 ~~a~~~~~~~~~~~~~~~~~ 369 (397)
.++..++..+..+......+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~ 171 (251)
T PF13440_consen 152 LLAFIISALLALLISFYLLR 171 (251)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 88888888887766554333
No 44
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=97.05 E-value=0.036 Score=53.89 Aligned_cols=128 Identities=16% Similarity=0.117 Sum_probs=100.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCcch--
Q 015969 19 DMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISP-- 95 (397)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-- 95 (397)
++..+.+...+.+...+|++...+ -..++.++.+++.+.-..+.+.+.++..+.-+|+.+++.+.-++.++....+.
T Consensus 339 ~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~a~~~~l~ 418 (549)
T PF04506_consen 339 KQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSVASESQLD 418 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHhCCHHHHH
Confidence 456777888888888888888777 77888888887554433444566788889999999999999999998876544
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHhc
Q 015969 96 -SAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLS 147 (397)
Q Consensus 96 -~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~ 147 (397)
......+..++-+..+++++.. ++|..|..+|+++.-.+-.+.+..++++.
T Consensus 419 ~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~ 470 (549)
T PF04506_consen 419 RYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRY 470 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666667777888765 78999999999999999999998888775
No 45
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=96.97 E-value=0.099 Score=48.27 Aligned_cols=130 Identities=18% Similarity=0.150 Sum_probs=98.1
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCcc
Q 015969 16 QKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIIS 94 (397)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 94 (397)
+|.+++..++...+.+....|++.+.. ...+++.+.+.+.+.-....+...+++.+.-+|+.+++.+.-++.++....+
T Consensus 316 e~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~ 395 (530)
T KOG2864|consen 316 ENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSR 395 (530)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHH
Confidence 344455666777777777777777666 5677778887766554444556779999999999999999999998876543
Q ss_pred ---hHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHhc
Q 015969 95 ---PSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLS 147 (397)
Q Consensus 95 ---~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~ 147 (397)
...+...+.++.-.+.+++++-. +|..|..+|+++.-.+-.+....++++.
T Consensus 396 qi~~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 396 QIDKHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456677777888888888866 4669999999999888888887777764
No 46
>COG4267 Predicted membrane protein [Function unknown]
Probab=86.14 E-value=28 Score=32.06 Aligned_cols=136 Identities=14% Similarity=0.139 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHH
Q 015969 218 MIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSV 297 (397)
Q Consensus 218 ~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~ 297 (397)
.++.+++....-.+|..+=+||.+++.....-.+.+....+..++..++... +++.. .. =.......
T Consensus 75 IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~vf~~~--------~~~si---~y--k~l~~~~F 141 (467)
T COG4267 75 IITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIVFFVN--------NQYSI---VY--KILACALF 141 (467)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhc--------CchhH---HH--HHHHHHHH
Confidence 4466777777888888888888888888887777777777766664222211 22211 11 11233444
Q ss_pred HHhhHHHHHHHHHhhcCccchhHHHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHh
Q 015969 298 ILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLR 370 (397)
Q Consensus 298 ~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 370 (397)
...+..-+....+.+++|.+.....-..+ ..+.+.++.++. +.+..|.-++.-++..+...+...++.|
T Consensus 142 V~m~~~Wi~~iFlS~lK~y~~iv~sF~iG-~~~sv~La~~~~---~~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 142 VGMSLVWILMIFLSGLKKYKLIVLSFFIG-YVVSVLLARLFL---KSPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---HhHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 55566667788889999999888777777 566666666654 3488899999999988877766655544
No 47
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=69.33 E-value=79 Score=27.75 Aligned_cols=87 Identities=10% Similarity=0.070 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 015969 218 MIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVT-SISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALS 296 (397)
Q Consensus 218 ~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~ 296 (397)
.+...+........-++..++|+++.++...... ...+...++..+.+++.++.+-.+...=|+. ...-+....-.
T Consensus 111 ~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~~~~~~~~~~~~i~~fla~~~G~~~v~~il~~iP~~---v~~Gl~vaggm 187 (265)
T TIGR00822 111 IFVRTITVLFQHAADKAAKEANTAAISRLHVTAMLIQALRVAIPALIVALVSQSAVQAMLKAIPEV---VTHGLQIAGGI 187 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHCHHH---HHHHHHHHHhh
Confidence 3344455566666777778889988876544332 2333334444333333333332333222321 22224444444
Q ss_pred HHHhhHHHHHH
Q 015969 297 VILNGIQPVLS 307 (397)
Q Consensus 297 ~~~~~~~~~~~ 307 (397)
.|..++...+.
T Consensus 188 LPAvGfAmLl~ 198 (265)
T TIGR00822 188 IVVVGYAMVLR 198 (265)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
No 48
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=55.37 E-value=1.8e+02 Score=27.20 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=32.8
Q ss_pred CChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhc
Q 015969 238 AHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYA 275 (397)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l 275 (397)
.+.++.+++.+++.+++.....+..++.....-|+...
T Consensus 88 p~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~ 125 (386)
T PF05975_consen 88 PKESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQ 125 (386)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999999998888888888763
No 49
>PF14184 YrvL: Regulatory protein YrvL
Probab=53.58 E-value=1e+02 Score=23.80 Aligned_cols=101 Identities=13% Similarity=0.145 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Q 015969 25 LQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIF-VFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAAT 103 (397)
Q Consensus 25 ~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~y-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 103 (397)
+...+.......++.+........+.+++|.+-|....-.-| +.....+.|+..+..++...+.-.+-.+.. .....
T Consensus 4 ~~~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~--~~~l~ 81 (132)
T PF14184_consen 4 FIIFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRL--FILLA 81 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHH--HHHHH
Confidence 344455555555555566677788899998876554443333 334466777777777777766666333333 35667
Q ss_pred HHHHHHHHHHHHHHhCCCccchHH
Q 015969 104 LVVHVLLSWVAIFKLGWGLLGASL 127 (397)
Q Consensus 104 ~~~~i~l~~ili~~~~~g~~gaa~ 127 (397)
..+...+++..++.-+.=+.+.-+
T Consensus 82 ~~id~~~t~~~i~~aD~~m~sI~i 105 (132)
T PF14184_consen 82 FIIDFLFTWITIYTADELMESISI 105 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhcceee
Confidence 778888888888765533333333
No 50
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=53.30 E-value=75 Score=22.14 Aligned_cols=38 Identities=13% Similarity=0.086 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHhhccCChhhhHHHHHHHHHHHHHHHHH
Q 015969 223 FNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVI 260 (397)
Q Consensus 223 ~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 260 (397)
++...+..+-..+.+||++++++..+++.+++.+-.++
T Consensus 36 ~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~ 73 (82)
T PF04505_consen 36 VAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIII 73 (82)
T ss_pred HHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHH
Confidence 33344556677788899999999999988887655444
No 51
>KOG2468 consensus Dolichol kinase [Lipid transport and metabolism]
Probab=53.23 E-value=1.8e+02 Score=27.67 Aligned_cols=74 Identities=9% Similarity=0.048 Sum_probs=49.5
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhHHHHHHHH
Q 015969 172 STASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVT 251 (397)
Q Consensus 172 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~ 251 (397)
+.|..++.+.-.+.-..-.++.+...+++.+++- +.-....|++.++..++++.+|+.+..+-+|...-.+
T Consensus 379 sGpLIiSh~yLLiGcslPIWms~~p~~~~ral~~---------laGiLalGiGDTmASiiG~r~G~~RW~~TkKTlEGT~ 449 (510)
T KOG2468|consen 379 SGPLIISHFYLLIGCSLPIWMSNSPCGGDRALAL---------LAGILALGIGDTMASIIGKRYGRIRWSGTKKTLEGTL 449 (510)
T ss_pred CCceeHHHHHHHHhcccchhccCCCCCchhhhhh---------hhhheeeccchHHHHHHhhhhcceecCCCcceeehhh
Confidence 6777776665555555555566555444333333 2234578999999999999999998888877776554
Q ss_pred HHH
Q 015969 252 SIS 254 (397)
Q Consensus 252 ~~~ 254 (397)
...
T Consensus 450 Afi 452 (510)
T KOG2468|consen 450 AFI 452 (510)
T ss_pred HHH
Confidence 433
No 52
>PF14184 YrvL: Regulatory protein YrvL
Probab=49.77 E-value=1.2e+02 Score=23.44 Aligned_cols=108 Identities=9% Similarity=0.055 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhhcccCc-hhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHHHh
Q 015969 252 SISLALSVILAILVLILRNVMSYAFTGG-STVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLI 330 (397)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~ 330 (397)
........+.+ ..++...-+.++++-+ +...+...-.+.....+.|+..+.......+.-.+.++..... -...+
T Consensus 9 ~~~l~~~~v~a-~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~~~---l~~~i 84 (132)
T PF14184_consen 9 IIALLLIIVFA-IYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLFIL---LAFII 84 (132)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHHHH---HHHHH
Confidence 33334433333 3444555667777533 3445555556667777888888887777666666444433322 22356
Q ss_pred hHHHHHHHHHhccCCcchhhHHHHHHHHHHHHH
Q 015969 331 GIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTII 363 (397)
Q Consensus 331 ~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~ 363 (397)
....+|+..+.-+.=+.++++....--++....
T Consensus 85 d~~~t~~~i~~aD~~m~sI~is~~~e~i~al~~ 117 (132)
T PF14184_consen 85 DFLFTWITIYTADELMESISISTLSEIIFALLF 117 (132)
T ss_pred HHHHHHHHHHHHHHHhcceeeCcHHHHHHHHHH
Confidence 777788777776666777777666554444333
No 53
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=44.19 E-value=1.2e+02 Score=24.58 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=19.7
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHhc
Q 015969 121 GLLGASLVLSLSWWIIVAAQFVYILLS 147 (397)
Q Consensus 121 g~~gaa~at~i~~~~~~~~~~~~~~~~ 147 (397)
++.|...++.+.+.+..+....|.++.
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~nl 161 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAFNL 161 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHheeec
Confidence 344667788888888888877777664
No 54
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=41.75 E-value=1.3e+02 Score=25.49 Aligned_cols=40 Identities=8% Similarity=0.079 Sum_probs=24.9
Q ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCC
Q 015969 16 QKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGE 55 (397)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 55 (397)
++++.....+..++...+.+-+++++++....++.++++.
T Consensus 141 E~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 141 EKYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 3555566666666666665555555566666677777664
No 55
>COG3715 ManY Phosphotransferase system, mannose/fructose/N-acetylgalactosamine-specific component IIC [Carbohydrate transport and metabolism]
Probab=39.61 E-value=2.6e+02 Score=24.50 Aligned_cols=88 Identities=5% Similarity=-0.065 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhhhHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 015969 218 MIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLA-LSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALS 296 (397)
Q Consensus 218 ~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~ 296 (397)
.+...+........=++-.++|.++.++....+...... ...+..+..++..+..-.++..=|+... +-+.+..-.
T Consensus 111 ~~~rt~~~~f~h~aDk~ae~gn~~~i~~~h~~~~~~~~~~~~ipaf~~~~~g~~~V~~~l~aiP~~l~---~GL~vaGgm 187 (265)
T COG3715 111 TFVRTITVGFVHRADKAAEEGNTRGIERLHIGALLLQALRIAIPAFLVAYFGSSAVQSLLDAIPEWLT---NGLAVAGGM 187 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHcCChhHhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhchHHHh---hhhhHhcch
Confidence 344455556666666777788999988887777744444 4444444444334444443322233222 224444444
Q ss_pred HHHhhHHHHHHH
Q 015969 297 VILNGIQPVLSG 308 (397)
Q Consensus 297 ~~~~~~~~~~~~ 308 (397)
.|..++...+..
T Consensus 188 lpavGfAmll~~ 199 (265)
T COG3715 188 LPAVGFAMLLNM 199 (265)
T ss_pred hHHHHHHHHHHH
Confidence 555555544443
No 56
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=38.61 E-value=41 Score=25.53 Aligned_cols=28 Identities=21% Similarity=0.362 Sum_probs=11.5
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhcCHH
Q 015969 347 KGIWSGMIGGTLIQTIILVYVTLRTDWN 374 (397)
Q Consensus 347 ~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 374 (397)
.|+.+|..++-+...++..++++|++++
T Consensus 67 ~~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444444333444445554433
No 57
>TIGR03727 urea_t_UrtC_arc urea ABC transporter, permease protein UrtC, archaeal type. Members of this protein family are ABC transporter permease subunits restricted to the Archaea. Several lines of evidence suggest this protein is functionally analogous, as well as homologous, to the UrtC subunit of the Corynebacterium glutamicum urea transporter. All members of the operon show sequence similarity to urea transport subunits, the gene is located near the urease structural subunits in two of three species, and partial phylogenetic profiling identifies this permease subunit as closely matching the profile of urea utilization.
Probab=38.03 E-value=3.4e+02 Score=25.26 Aligned_cols=15 Identities=7% Similarity=0.135 Sum_probs=7.1
Q ss_pred HHHHHHhHHHHHHHH
Q 015969 167 DFLKLSTASAVMLCL 181 (397)
Q Consensus 167 ~~l~~~~p~~~~~~~ 181 (397)
-+..+++...+....
T Consensus 133 ai~Tla~~~i~~~~~ 147 (364)
T TIGR03727 133 TIITLVVTLVLETFM 147 (364)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555544333
No 58
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=37.34 E-value=2.1e+02 Score=26.54 Aligned_cols=12 Identities=0% Similarity=0.027 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 015969 251 TSISLALSVILA 262 (397)
Q Consensus 251 ~~~~~~~~~~~~ 262 (397)
.++.+-+.+|+.
T Consensus 34 s~lv~~~~lP~l 45 (385)
T PF03547_consen 34 SKLVFNVFLPAL 45 (385)
T ss_pred HHHHHHHHHHHH
Confidence 344444555543
No 59
>PRK10739 putative antibiotic transporter; Provisional
Probab=37.18 E-value=2.5e+02 Score=23.47 Aligned_cols=59 Identities=12% Similarity=0.059 Sum_probs=38.1
Q ss_pred HHHHHHHhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHH
Q 015969 227 ASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAEL 289 (397)
Q Consensus 227 ~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~ 289 (397)
..|..-..-.+.++++-|+..++.....+ ...+++.++.+.+...|+-+.+..+.+.-.
T Consensus 20 ~ipiflslt~~~~~~~r~~ia~~a~~~a~----~ill~f~~~G~~iL~~fGIsl~afrIAGGi 78 (197)
T PRK10739 20 NLPIFMSVLKHLEPKRRRAIMIRELLIAL----LVMLVFLFAGEKILAFLNLRTETVSISGGI 78 (197)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34555555555666666677766654444 444567788999999998776666665443
No 60
>PRK01637 hypothetical protein; Reviewed
Probab=36.11 E-value=3.1e+02 Score=24.34 Aligned_cols=10 Identities=0% Similarity=-0.031 Sum_probs=4.6
Q ss_pred HHHHhhccCC
Q 015969 230 RVGNELGAAH 239 (397)
Q Consensus 230 ~vs~~~g~~~ 239 (397)
-..+.++.++
T Consensus 115 a~N~i~~~~~ 124 (286)
T PRK01637 115 ALNTIWRSKR 124 (286)
T ss_pred HHHHHhCCCC
Confidence 3344555443
No 61
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=35.63 E-value=2e+02 Score=22.00 Aligned_cols=22 Identities=23% Similarity=0.306 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhHHHHHHHHHh
Q 015969 320 AYVNVGCYYLIGIPIGCLLGFK 341 (397)
Q Consensus 320 ~~~~~~~~~~~~i~~~~~l~~~ 341 (397)
..++.+...+...|..+.....
T Consensus 75 ~iiHf~~~~~~~~~~~~~~gW~ 96 (136)
T PF11457_consen 75 TIIHFIITYAIFLILAYLLGWF 96 (136)
T ss_pred HHHHHHHHHHHHHHHHHHhCCc
Confidence 3444444445555666555433
No 62
>COG4794 EscS Type III secretory pathway, component EscS [Intracellular trafficking and secretion]
Probab=35.13 E-value=1.6e+02 Score=20.73 Aligned_cols=38 Identities=8% Similarity=0.155 Sum_probs=27.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcC
Q 015969 17 KYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLG 54 (397)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~ 54 (397)
|+++.-+..++++++.++++++-.++-....-+..++.
T Consensus 2 ~~~~i~~~~~qaL~liLilSlPpvivAsvvGllVslvQ 39 (89)
T COG4794 2 DMDDIVFLTSQALWLILILSLPPVIVASVVGLLVSLVQ 39 (89)
T ss_pred cHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 55677788899999999999887766444455555543
No 63
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=33.57 E-value=1.2e+02 Score=27.25 Aligned_cols=58 Identities=16% Similarity=0.141 Sum_probs=27.4
Q ss_pred CccchhHHHHHHHHHHhhHHHHHHHHHh-------ccCCcchhhHHHHHHHHHHHHHHHHHHHhcCH
Q 015969 314 GWQAFVAYVNVGCYYLIGIPIGCLLGFK-------FNLGTKGIWSGMIGGTLIQTIILVYVTLRTDW 373 (397)
Q Consensus 314 g~~~~~~~~~~~~~~~~~i~~~~~l~~~-------~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 373 (397)
+..+..-..++++ . +..|...+-+.+ |...-...++.......+.+++.+++++|++|
T Consensus 253 ~~N~~mk~LTvvt-~-IflP~t~IaGiyGMNf~~mP~l~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 253 KMNEIMKILTVVS-T-IFIPLTFIAGIYGMNFKFMPELNWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHHHHHHHHHHH-H-HHHHHHHHHHHHhCCcccCccccchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444445556665 2 345555554322 21111122333333344444556777877776
No 64
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=31.79 E-value=3.5e+02 Score=23.64 Aligned_cols=66 Identities=18% Similarity=0.035 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHH
Q 015969 220 AVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVA 287 (397)
Q Consensus 220 ~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 287 (397)
...+-.+...+.-+--.....+..++....+..++....+.=++..+.+++ ..++..+.+....+.
T Consensus 91 lL~lEvSvvvFgL~fghlds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d--~~l~~~~~~~~~hgg 156 (261)
T PF10160_consen 91 LLSLEVSVVVFGLQFGHLDSRSSIKRTLLITGLISLADSLTQAILEFGFGD--VPLFIENFDLFGHGG 156 (261)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHheeecCc--ccccCCCCCcCCcCC
Confidence 344444444444332223455666666666666666666666666666665 455544444444433
No 65
>PRK09546 zntB zinc transporter; Reviewed
Probab=30.44 E-value=1.6e+02 Score=26.83 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhcCH
Q 015969 356 GTLIQTIILVYVTLRTDW 373 (397)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~ 373 (397)
...+.++..+++++|++|
T Consensus 306 im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 306 LLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 334444455667777766
No 66
>COG0170 SEC59 Dolichol kinase [Lipid metabolism]
Probab=28.57 E-value=1.2e+02 Score=25.73 Aligned_cols=45 Identities=7% Similarity=0.078 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhhhHHHHHHHHHHHHHHHHHHH
Q 015969 218 MIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILA 262 (397)
Q Consensus 218 ~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (397)
....+++.++...+++.+|+++....++--..+....++.+.+++
T Consensus 120 I~~l~~GD~lAsiiG~~~G~~~~~~~~~KSleGSla~fi~~~l~~ 164 (216)
T COG0170 120 ILVLALGDGLASIIGKRYGRHKRILGNGKSLEGSLAFFIASFLVL 164 (216)
T ss_pred HHHHHHhhHHHHHhCcccCccccccCCCCchhhhHHHHHHHHHHH
Confidence 467799999999999999986333333333333333444444433
No 67
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=28.33 E-value=4.2e+02 Score=23.40 Aligned_cols=89 Identities=8% Similarity=-0.059 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHHhhccCChhhhHHHHHHHHH-HHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHH
Q 015969 218 MIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTS-ISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALS 296 (397)
Q Consensus 218 ~~~~~~~~a~~~~vs~~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~ 296 (397)
.+...+.....+..-++..++|+++.++...-... ..+....+..+.+++.++.+-.+...=|+ ....-+....-.
T Consensus 112 ~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~~~~~~~~~~~~~~~fl~~~fG~~~v~~~~~~iP~---~v~~GL~vaggm 188 (267)
T PRK09757 112 LFFYSAFSLFMTKADKCAKEADTAAFSRLNWTTMLIVASAYAVIAFLCTYLAQGAMQALVKAMPA---WLTHGFEVAGGI 188 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH---HHHHHHHHHhch
Confidence 34445556666777777788888888766443332 23333333333333333333333322222 222234444445
Q ss_pred HHHhhHHHHHHHH
Q 015969 297 VILNGIQPVLSGV 309 (397)
Q Consensus 297 ~~~~~~~~~~~~~ 309 (397)
.|..++...+..+
T Consensus 189 LPAvGfAmLl~~m 201 (267)
T PRK09757 189 LPAVGFGLLLRVM 201 (267)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554443
No 68
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=27.71 E-value=3e+02 Score=25.02 Aligned_cols=57 Identities=19% Similarity=0.257 Sum_probs=27.9
Q ss_pred CccchhHHHHHHHHHHhhHHHHHHHHHh-------ccCCcc-hhhHHHHHHHHHHHHHHHHHHHhcCH
Q 015969 314 GWQAFVAYVNVGCYYLIGIPIGCLLGFK-------FNLGTK-GIWSGMIGGTLIQTIILVYVTLRTDW 373 (397)
Q Consensus 314 g~~~~~~~~~~~~~~~~~i~~~~~l~~~-------~~~g~~-g~~~a~~~~~~~~~~~~~~~~~~~~~ 373 (397)
+.....-..++++ . +.+|.+.+.+.+ |..+-. |-|++..+ .++.+++.+++++|++|
T Consensus 257 ~~N~imk~LTi~s-~-iflPpTlIagiyGMNf~~mPel~~~~Gy~~~l~~-m~~~~~~~~~~frrk~W 321 (322)
T COG0598 257 NQNEIMKILTIVS-T-IFLPPTLITGFYGMNFKGMPELDWPYGYPIALIL-MLLLALLLYLYFRRKGW 321 (322)
T ss_pred HHHHHHHHHHHHH-H-HHHhhHHHHcccccCCCCCcCCCCcccHHHHHHH-HHHHHHHHHHHHHhcCc
Confidence 3444444555555 2 345666555432 212211 33444333 34445556777888776
No 69
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=27.45 E-value=1.5e+02 Score=20.69 Aligned_cols=34 Identities=12% Similarity=0.004 Sum_probs=22.9
Q ss_pred hHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHH
Q 015969 7 TLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLM 40 (397)
Q Consensus 7 ~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 40 (397)
..+-..+.++|++++++.-+++-.++.+..++..
T Consensus 42 ~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g~ 75 (82)
T PF04505_consen 42 SKVRSRYAAGDYEGARRASRKAKKWSIIAIIIGI 75 (82)
T ss_pred hhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHHH
Confidence 3445667788888888888887777655444433
No 70
>PRK11085 magnesium/nickel/cobalt transporter CorA; Provisional
Probab=26.87 E-value=2.3e+02 Score=25.75 Aligned_cols=19 Identities=11% Similarity=0.163 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHhcCH
Q 015969 355 GGTLIQTIILVYVTLRTDW 373 (397)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~ 373 (397)
....+.+++.+++++|++|
T Consensus 297 ~~~~~~~~~~~~~f~rk~W 315 (316)
T PRK11085 297 ILMILAGLAPYLYFKRKNW 315 (316)
T ss_pred HHHHHHHHHHHHHHHHccc
Confidence 3334444555677777776
No 71
>COG1620 LldP L-lactate permease [Energy production and conversion]
Probab=26.56 E-value=4.4e+02 Score=25.74 Aligned_cols=23 Identities=9% Similarity=-0.289 Sum_probs=12.2
Q ss_pred HHhhcCccchhHHHHHHHHHHhh
Q 015969 309 VAVGCGWQAFVAYVNVGCYYLIG 331 (397)
Q Consensus 309 ~l~~~g~~~~~~~~~~~~~~~~~ 331 (397)
-.++..++....+++..+..+-.
T Consensus 203 ~~kgi~e~~p~~lvag~sfti~q 225 (522)
T COG1620 203 GWKGIKEVWPAILVAGLSFTIPQ 225 (522)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666555533333
No 72
>TIGR00427 membrane protein, MarC family. MarC is a protein that spans the plasma membrane multiple times and once was thought to be a multiple antibiotic resistance protein. The function for this family is unknown.
Probab=26.55 E-value=3.8e+02 Score=22.40 Aligned_cols=58 Identities=7% Similarity=-0.089 Sum_probs=36.5
Q ss_pred HHHHHHHhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHH
Q 015969 227 ASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAE 288 (397)
Q Consensus 227 ~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 288 (397)
..|.....-+..+.++-++..++..... ....+.+.+.++.+...|+-+-+..+.+.-
T Consensus 23 ~ipvfl~lt~~~~~~~r~~ia~~~~l~a----~~ill~f~~~G~~iL~~fgIsl~afrIaGG 80 (201)
T TIGR00427 23 NIPIFISLTEYYTAAERNKIAKKANISS----FIILLIFLVFGDTILKLFGISIDAFRIAGG 80 (201)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3455555555556666666666555444 444456778889999999876655665544
No 73
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=26.29 E-value=3.8e+02 Score=25.94 Aligned_cols=77 Identities=25% Similarity=0.256 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchhHHHHHHHHH--HhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHH
Q 015969 286 VAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYY--LIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTII 363 (397)
Q Consensus 286 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~--~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~ 363 (397)
....++-+..+..+-++..+...+.--.++.+.........+. ++..|++-++... .+|=..+.......-.+-+++
T Consensus 133 ~~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~ 211 (466)
T KOG2532|consen 133 VLRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFIL 211 (466)
T ss_pred HHHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHH
Confidence 4444555666666666666666666666666665555444422 4555666566443 357667666555555554444
No 74
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=25.41 E-value=5.6e+02 Score=23.94 Aligned_cols=40 Identities=15% Similarity=0.290 Sum_probs=30.4
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHH-HcCCC
Q 015969 17 KYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILL-LLGES 56 (397)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~-~~~~~ 56 (397)
++++.+++.+.+...+.+...+..++ ....-|+.. ..+.+
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~~~~ 130 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVYGFS 130 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 45678999999999999999988865 666666665 44433
No 75
>PRK11111 hypothetical protein; Provisional
Probab=25.23 E-value=4.2e+02 Score=22.43 Aligned_cols=56 Identities=7% Similarity=-0.030 Sum_probs=34.0
Q ss_pred HHHHHhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHH
Q 015969 229 VRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAE 288 (397)
Q Consensus 229 ~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 288 (397)
|..-..-.+.+.++-++..++.... +....+++.++++++..+|+-+-+..+.+.-
T Consensus 28 piflslt~~~s~~~r~~ia~~a~l~----a~~ill~f~~~G~~iL~~fGIsl~afrIaGG 83 (214)
T PRK11111 28 PVFISMTSHQTAAERNKTNLTANLS----VAIILLISLFLGDFILNLFGISIDSFRIAGG 83 (214)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4443444444555555666555544 4444556778899999999876655665544
No 76
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=25.23 E-value=5.7e+02 Score=23.93 Aligned_cols=13 Identities=0% Similarity=-0.437 Sum_probs=6.2
Q ss_pred ChhhhHHHHHHHH
Q 015969 239 HPKSCKFSVIVVT 251 (397)
Q Consensus 239 ~~~~~~~~~~~~~ 251 (397)
|.++..+..++.+
T Consensus 73 Dlr~i~~~g~~~l 85 (378)
T PF05684_consen 73 DLRRILRLGGRLL 85 (378)
T ss_pred cHHHHHHhhHHHH
Confidence 4555555544433
No 77
>COG4736 CcoQ Cbb3-type cytochrome oxidase, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.43 E-value=2.1e+02 Score=18.63 Aligned_cols=12 Identities=17% Similarity=0.260 Sum_probs=4.4
Q ss_pred HHhcCHHHHHHH
Q 015969 368 TLRTDWNKEVEK 379 (397)
Q Consensus 368 ~~~~~~~~~~~~ 379 (397)
.++...|+..+.
T Consensus 29 ayr~~~K~~~d~ 40 (60)
T COG4736 29 AYRPGKKGEFDE 40 (60)
T ss_pred HhcccchhhHHH
Confidence 333333333333
No 78
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=23.84 E-value=1.4e+02 Score=23.76 Aligned_cols=36 Identities=17% Similarity=0.002 Sum_probs=23.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHchhc
Q 015969 350 WSGMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMD 385 (397)
Q Consensus 350 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (397)
+.+.++..++.++++++.+++.-|++......+|.+
T Consensus 9 ~~sqifw~iI~FlILy~ll~kf~~ppI~~iLe~R~~ 44 (155)
T PRK06569 9 YYSQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQT 44 (155)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456677777777777777777767665554444443
No 79
>PF02705 K_trans: K+ potassium transporter; InterPro: IPR003855 This is a family of K+ potassium transporters that are conserved across phyla, having both bacterial (KUP) [], yeast (HAK) [], and plant (AtKT) [] sequences as members.; GO: 0015079 potassium ion transmembrane transporter activity, 0071805 potassium ion transmembrane transport, 0016020 membrane
Probab=22.61 E-value=5.8e+02 Score=25.19 Aligned_cols=38 Identities=13% Similarity=0.192 Sum_probs=24.7
Q ss_pred HHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 015969 334 IGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTD 372 (397)
Q Consensus 334 ~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 372 (397)
+.++-....|+ ..|.|+...++-.+..++..|..-+++
T Consensus 398 ~~ff~anl~K~-~~GGW~pl~ia~~l~~iM~tW~~G~~~ 435 (534)
T PF02705_consen 398 LLFFSANLLKF-PHGGWFPLLIAAVLFTIMYTWRRGRKL 435 (534)
T ss_pred HHHHHHHHHHH-ccCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444433332 669999999998888777666554443
No 80
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=20.74 E-value=8e+02 Score=23.99 Aligned_cols=97 Identities=9% Similarity=0.029 Sum_probs=48.4
Q ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHHHHHHHhccccccccCCCc--h
Q 015969 82 PIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFS--L 159 (397)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~~~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 159 (397)
...+.+...++.+-.-...+.+...-+....+....++.|..-....+.+..+......++.+++..+..+.|.+.. .
T Consensus 156 ~Yer~LeSl~~~~diY~sll~S~tf~v~~i~i~~il~~~~~~~~l~ls~~~~~~~~~l~l~~i~~~~P~dp~~h~~~~kt 235 (527)
T COG1955 156 EYERALESLDVWKDIYVSLLVSLTFLVAFILILPILYGGNTTLILYLSLLAVFAIEILLLYVIFKALPKDPLWHRLRIKT 235 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHheeeecCCcchhccCCCCc
Confidence 33344444444433333333333332333333333456677556666666666666666666665444444444332 2
Q ss_pred hhhhhHHHHHHHHhHHHHH
Q 015969 160 QAFSGLWDFLKLSTASAVM 178 (397)
Q Consensus 160 ~~~~~~k~~l~~~~p~~~~ 178 (397)
++-..+|+....++|....
T Consensus 236 ~~~~~i~~~~~isi~l~~i 254 (527)
T COG1955 236 KEQIKIRRLAIISITLSAI 254 (527)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 2334467777777777654
No 81
>PRK10995 inner membrane protein; Provisional
Probab=20.02 E-value=5.5e+02 Score=21.81 Aligned_cols=57 Identities=5% Similarity=0.008 Sum_probs=34.3
Q ss_pred HHHHHHhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHH
Q 015969 228 SVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAE 288 (397)
Q Consensus 228 ~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~ 288 (397)
.|..-..-+..++++-++..++..... ..+.++..++.+.+...|+-+.+..+.+.-
T Consensus 25 ~pif~~lt~~~~~~~r~~ia~~~~~~a----~~ill~f~~~G~~il~~fgIs~~a~rIaGG 81 (221)
T PRK10995 25 VALFLGLSGNMTPEERNRQALMASVYV----FAIMMVAFYAGQLVMSTFGISIPGLRIAGG 81 (221)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344444444456666666666655444 444556777888999999766554554433
Done!