Query 015969
Match_columns 397
No_of_seqs 198 out of 1963
Neff 10.5
Searched_HMMs 29240
Date Mon Mar 25 05:40:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015969.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015969hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 5.2E-45 1.8E-49 347.7 27.2 369 2-372 68-447 (460)
2 3mkt_A Multi antimicrobial ext 99.9 2.7E-21 9.3E-26 183.8 14.1 209 160-372 6-218 (460)
3 4aps_A DI-OR tripeptide H+ sym 38.4 2.2E+02 0.0077 25.6 22.0 20 341-360 445-464 (491)
4 4ev6_A Magnesium transport pro 38.2 47 0.0016 29.1 5.5 54 317-373 277-338 (339)
5 2jwa_A Receptor tyrosine-prote 33.3 50 0.0017 19.1 3.1 8 140-147 31-38 (44)
6 2knc_B Integrin beta-3; transm 28.7 1.2E+02 0.0041 20.0 4.9 17 346-362 10-26 (79)
7 2k1k_A Ephrin type-A receptor 26.7 54 0.0018 18.2 2.5 15 123-137 14-28 (38)
8 1pw4_A Glycerol-3-phosphate tr 18.3 4.9E+02 0.017 22.8 10.4 231 147-397 5-236 (451)
9 2iub_A CORA, divalent cation t 18.0 64 0.0022 28.6 2.6 62 310-373 294-362 (363)
10 1pw4_A Glycerol-3-phosphate tr 14.8 5.9E+02 0.02 22.2 27.6 327 26-385 92-451 (451)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=5.2e-45 Score=347.70 Aligned_cols=369 Identities=21% Similarity=0.391 Sum_probs=339.0
Q ss_pred cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015969 2 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNF 81 (397)
Q Consensus 2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 81 (397)
++|..+.++|++|++|+++.++.+++++.+..+++++.++++.+.++++.+++.+++..+.+..|++++.++.++..+..
T Consensus 68 ~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~ 147 (460)
T 3mkt_A 68 LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQ 147 (460)
T ss_dssp HHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999998877788899999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHH-h---CCCccchHHHHHHHHHHHHHHHHHHHHhcccccc-c-cC
Q 015969 82 PIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFK-L---GWGLLGASLVLSLSWWIIVAAQFVYILLSERCKK-T-WT 155 (397)
Q Consensus 82 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~-~---~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~-~-~~ 155 (397)
.+++++|+.|+++.++..++++.++|+++++++++. + ++|+.|+++|+.+++.+..++..++.+++++.++ + ++
T Consensus 148 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (460)
T 3mkt_A 148 ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE 227 (460)
T ss_dssp HHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhh
Confidence 999999999999999999999999999999999975 4 6999999999999999999998888887653221 1 12
Q ss_pred CCchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015969 156 GFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNEL 235 (397)
Q Consensus 156 ~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~ 235 (397)
+..+++++.+|++++++.|..+++.........++.+++++| ++++++|+++.++.++...+..+++++..|.+++++
T Consensus 228 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~ 305 (460)
T 3mkt_A 228 TFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL 305 (460)
T ss_dssp CCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223456688999999999999999999999999999999997 668999999999999999999999999999999999
Q ss_pred ccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCc
Q 015969 236 GAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGW 315 (397)
Q Consensus 236 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 315 (397)
|++|++++++..+++.+....++++.+++++++++++..+|.+|+++.+.+.+++++++++.++.+++....+++++.||
T Consensus 306 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~ 385 (460)
T 3mkt_A 306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKD 385 (460)
T ss_dssp HSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGST
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHHHHHhhHHHHHHHHHh----cc-CCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 015969 316 QAFVAYVNVGCYYLIGIPIGCLLGFK----FN-LGTKGIWSGMIGGTLIQTIILVYVTLRTD 372 (397)
Q Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 372 (397)
++.+++.++.+.+++++|+++++... ++ +|..|+|+++.+++.+.+++..++++|+.
T Consensus 386 ~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~ 447 (460)
T 3mkt_A 386 MTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ 447 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999779999999999776 66 89999999999999999888766655543
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.86 E-value=2.7e-21 Score=183.79 Aligned_cols=209 Identities=16% Similarity=0.128 Sum_probs=191.9
Q ss_pred hhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Q 015969 160 QAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAH 239 (397)
Q Consensus 160 ~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g~~~ 239 (397)
..++..|++++.+.|..++++...+...+|+.+++++| ++++++++.+.++..+...+..+++.+..|.+++++|++|
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg--~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~is~~~g~~~ 83 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVS--AIDMAAVSIAASIWLPSILFGVGLLMALVPVVAQLNGAGR 83 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHT--TTTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCTTTTSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34578999999999999999999999999999999987 6689999999999998888999999999999999999999
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCccchh
Q 015969 240 PKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFV 319 (397)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~ 319 (397)
+++.++..+.+.......+++.+++ +.+.+++..+++.|++..+.+..+++++.++.++..+.....+++|+.||++.+
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 162 (460)
T 3mkt_A 84 QHKIPFEVHQGLILALLVSVPIIAV-LFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPA 162 (460)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHH-HHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHH
Confidence 9999999999999999999998765 778899999999899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhHHHHHHHHHh----ccCCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 015969 320 AYVNVGCYYLIGIPIGCLLGFK----FNLGTKGIWSGMIGGTLIQTIILVYVTLRTD 372 (397)
Q Consensus 320 ~~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 372 (397)
+..++.+ .++++++++++.+. |++|+.|+++++.+++.+..++..+++++++
T Consensus 163 ~~~~~~~-~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~ 218 (460)
T 3mkt_A 163 MVIGFIG-LLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSK 218 (460)
T ss_dssp HHHHHHH-HHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHH-HHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 9999998 57899999999764 4799999999999999999888777776543
No 3
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=38.35 E-value=2.2e+02 Score=25.63 Aligned_cols=20 Identities=10% Similarity=-0.052 Sum_probs=8.7
Q ss_pred hccCCcchhhHHHHHHHHHH
Q 015969 341 KFNLGTKGIWSGMIGGTLIQ 360 (397)
Q Consensus 341 ~~~~g~~g~~~a~~~~~~~~ 360 (397)
..+.+....+........+.
T Consensus 445 ~~~~~~~~~~~~~~~~~~~~ 464 (491)
T 4aps_A 445 YNAKSEVAYFSYFGLGSVVL 464 (491)
T ss_dssp GGGSSTTHHHHHTHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHH
Confidence 33445444444444433333
No 4
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=38.18 E-value=47 Score=29.14 Aligned_cols=54 Identities=17% Similarity=0.285 Sum_probs=26.4
Q ss_pred chhHHHHHHHHHHhhHHHHHHHHHh-------ccCC-cchhhHHHHHHHHHHHHHHHHHHHhcCH
Q 015969 317 AFVAYVNVGCYYLIGIPIGCLLGFK-------FNLG-TKGIWSGMIGGTLIQTIILVYVTLRTDW 373 (397)
Q Consensus 317 ~~~~~~~~~~~~~~~i~~~~~l~~~-------~~~g-~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 373 (397)
+..-..++++ ++.+|.+++-+.+ |..+ -.|-|+. ....++.+++.+++++|++|
T Consensus 277 ~~mk~LTiit--~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~-l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 277 QIMKILTMVT--TIFAVPMWITGIYGMNFSYLPLANNPQGFWLV-MALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHH--HHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHH-HHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHH--HHHHHHHHHHhhccCcCCCCCCccCchHHHHH-HHHHHHHHHHHHHHHHHcCC
Confidence 3334555555 2345666555432 2111 1233333 33344455566777777777
No 5
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=33.35 E-value=50 Score=19.07 Aligned_cols=8 Identities=13% Similarity=-0.214 Sum_probs=3.6
Q ss_pred HHHHHHhc
Q 015969 140 QFVYILLS 147 (397)
Q Consensus 140 ~~~~~~~~ 147 (397)
...+++|+
T Consensus 31 ~~~~~RRR 38 (44)
T 2jwa_A 31 FGILIKRR 38 (44)
T ss_dssp HHHHHHHH
T ss_pred HHhheehh
Confidence 34445444
No 6
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.69 E-value=1.2e+02 Score=20.00 Aligned_cols=17 Identities=12% Similarity=0.235 Sum_probs=7.6
Q ss_pred cchhhHHHHHHHHHHHH
Q 015969 346 TKGIWSGMIGGTLIQTI 362 (397)
Q Consensus 346 ~~g~~~a~~~~~~~~~~ 362 (397)
+.++..+.+.+-++..+
T Consensus 10 ~~~Iv~gvi~gilliGl 26 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGL 26 (79)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHH
Confidence 44444454444443333
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=26.72 E-value=54 Score=18.19 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=6.3
Q ss_pred cchHHHHHHHHHHHH
Q 015969 123 LGASLVLSLSWWIIV 137 (397)
Q Consensus 123 ~gaa~at~i~~~~~~ 137 (397)
.|+.++.+.+-.+..
T Consensus 14 AGiVvG~v~gv~li~ 28 (38)
T 2k1k_A 14 VAVIFGLLLGAALLL 28 (38)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHH
Confidence 344444444444333
No 8
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=18.28 E-value=4.9e+02 Score=22.80 Aligned_cols=231 Identities=10% Similarity=-0.131 Sum_probs=0.0
Q ss_pred ccccccccCCCchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015969 147 SERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAA 226 (397)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a 226 (397)
++.-.....+....+.+..+.-.+.-....+..+...............+. ++. .-............+...++.-
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~s~~~~g~~~~~~~~~~~~~~~ 80 (451)
T 1pw4_A 5 KPAPHKARLPAAEIDPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLV--EQG--FSRGDLGFALSGISIAYGFSKF 80 (451)
T ss_dssp CCCCCCCCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTSHHHHHHHTT--SST--TCSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcccCchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHh--ccHhHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhhccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHH
Q 015969 227 ASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVL 306 (397)
Q Consensus 227 ~~~~vs~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 306 (397)
....+++.+|+| +.+..+.....+..+.+.+.... .+....-.....+.-+..+..........
T Consensus 81 ~~G~l~dr~g~r----------~~l~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~l~G~~~~~~~~~~~~~i 144 (451)
T 1pw4_A 81 IMGSVSDRSNPR----------VFLPAGLILAAAVMLFMGFVPWA------TSSIAVMFVLLFLCGWFQGMGWPPCGRTM 144 (451)
T ss_dssp HHHHHHHHSCHH----------HHHHHHHHHHHHHHHHHHHCHHH------HSSSSHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hHHHHHHhcCch----------HHHHHHHHHHHHHHHHHHhhhhc------cccHHHHHHHHHHHHHHhhhccchHHHHH
Q ss_pred HHHHhhcCccchhHHHHHHHHHHhhHHHHHHHHHhccCC-cchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHchhc
Q 015969 307 SGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLG-TKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMD 385 (397)
Q Consensus 307 ~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g-~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (397)
........+.+..............+.-...-......| .....+...+...+..++.....+....+....+..+..+
T Consensus 145 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (451)
T 1pw4_A 145 VHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKN 224 (451)
T ss_dssp HTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCC
T ss_pred HHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcc
Q ss_pred cccCChhhhhcC
Q 015969 386 EWGDKTELLLKE 397 (397)
Q Consensus 386 ~~~~~~~~~~~e 397 (397)
+.+++.++..+|
T Consensus 225 ~~~~~~~~~~~~ 236 (451)
T 1pw4_A 225 DYPDDYNEKAEQ 236 (451)
T ss_dssp C-----------
T ss_pred cccccchhhhhc
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=17.98 E-value=64 Score=28.59 Aligned_cols=62 Identities=15% Similarity=0.172 Sum_probs=0.0
Q ss_pred HhhcCccchhHHHHHHHHHHhhHHHHHHHHHh-------ccCCcchhhHHHHHHHHHHHHHHHHHHHhcCH
Q 015969 310 AVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFK-------FNLGTKGIWSGMIGGTLIQTIILVYVTLRTDW 373 (397)
Q Consensus 310 l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~-------~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 373 (397)
..+.......-..++++ ++.+|.+++-+.+ |..+-...++...+..++.++..+++++|++|
T Consensus 294 ~is~~~N~imk~LTiit--~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 294 SVSNKTNEVMKVLTIIA--TIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHccc
No 10
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=14.77 E-value=5.9e+02 Score=22.20 Aligned_cols=327 Identities=11% Similarity=-0.017 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHh----HHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Q 015969 26 QRSAVILTATGIPLMVIYIF----SKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISA 101 (397)
Q Consensus 26 ~~~~~~~~~~~l~~~~~~~~----~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 101 (397)
+..+....+...+..++..+ .+.+..+ .....+.-+..+................+++.+.......
T Consensus 92 r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 162 (451)
T 1pw4_A 92 RVFLPAGLILAAAVMLFMGFVPWATSSIAVM---------FVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC 162 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCHHHHSSSSHH---------HHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhhhccccHHHH---------HHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHH-HhCCC-ccchHHHHHHHHHHHHHHHHHHHHhccccccccCCCc---------------------
Q 015969 102 ATLVVHVLLSWVAIF-KLGWG-LLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFS--------------------- 158 (397)
Q Consensus 102 ~~~~~~i~l~~ili~-~~~~g-~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------- 158 (397)
...+-.++...+.-. .-..| .....+...+..++..++........++.........
T Consensus 163 ~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (451)
T 1pw4_A 163 AHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQ 242 (451)
T ss_dssp HHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTCCC-------------CCTH
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhcccccccchhhhhccccccc
Q ss_pred --hhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhh-cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015969 159 --LQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGL-LDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNEL 235 (397)
Q Consensus 159 --~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~ 235 (397)
..+.-..+++.......................+... +|.+....+.......+..+...+..+ .+++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g-------~l~~~~ 315 (451)
T 1pw4_A 243 IFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCG-------WMSDKV 315 (451)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHT
T ss_pred chHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH
Q ss_pred --ccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhc
Q 015969 236 --GAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGC 313 (397)
Q Consensus 236 --g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~ 313 (397)
|+ +............++.+++.+.+ .++...-.....+.-...+.................
T Consensus 316 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 378 (451)
T 1pw4_A 316 FRGN----------RGATGVFFMTLVTIATIVYWMNP-------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKK 378 (451)
T ss_dssp STTC----------HHHHHHHHHHHHHHHHHHTTSCC-------TTCHHHHHHHHHHHHHHHTHHHHHHHHHHHHTSCTT
T ss_pred hcCC----------chhHHHHHHHHHHHHHHHHHHhc-------ccCHHHHHHHHHHHHHHHhchHHHHHHHHHHHhchh
Q ss_pred CccchhHHHHHHHHH-HhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHchhc
Q 015969 314 GWQAFVAYVNVGCYY-LIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMD 385 (397)
Q Consensus 314 g~~~~~~~~~~~~~~-~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (397)
.+.......+..... ...+.-...-....+.|....++...+...+..++.....++++.++.........+
T Consensus 379 ~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (451)
T 1pw4_A 379 AAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKRRHEQLLQELVPR 451 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGGSCC-
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhcCC
Done!