Query 015969
Match_columns 397
No_of_seqs 198 out of 1963
Neff 10.5
Searched_HMMs 13730
Date Mon Mar 25 05:40:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015969.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015969hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2oara1 f.16.1.1 (A:10-118) Ga 9.4 1E+02 0.0073 20.2 2.7 15 349-363 58-72 (109)
2 d1nkzb_ f.3.1.1 (B:) Light-har 8.5 1.5E+02 0.011 15.2 4.5 33 239-271 7-39 (41)
3 d1m56d_ f.23.8.1 (D:) Bacteria 7.2 1.8E+02 0.013 15.1 4.1 32 235-266 4-35 (42)
4 d2iuba2 f.17.3.1 (A:286-349) M 6.4 2.2E+02 0.016 16.0 3.0 6 332-337 17-22 (64)
5 d1rh5b_ f.23.28.1 (B:) Preprot 5.0 3E+02 0.022 15.3 3.6 11 17-27 19-29 (56)
6 d2fyuk1 f.23.15.1 (K:1-53) Sub 4.7 2.3E+02 0.017 15.6 2.0 28 9-36 2-29 (53)
7 d1lghb_ f.3.1.1 (B:) Light-har 4.5 2.8E+02 0.021 14.4 4.2 32 240-271 11-42 (43)
8 d1ijdb_ f.3.1.1 (B:) Light-har 4.2 2.9E+02 0.021 14.0 4.3 31 239-269 8-38 (40)
9 d2yvxa3 f.57.1.1 (A:276-448) M 3.6 6.7E+02 0.049 17.3 6.7 33 234-266 68-100 (173)
10 d1fftb2 f.17.2.1 (B:27-117) Cy 3.3 3.9E+02 0.028 16.2 2.7 17 163-179 59-75 (91)
No 1
>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=9.44 E-value=1e+02 Score=20.19 Aligned_cols=15 Identities=13% Similarity=0.073 Sum_probs=7.3
Q ss_pred hhHHHHHHHHHHHHH
Q 015969 349 IWSGMIGGTLIQTII 363 (397)
Q Consensus 349 ~~~a~~~~~~~~~~~ 363 (397)
.-++..+...+.+++
T Consensus 58 i~~G~fi~a~InFlI 72 (109)
T d2oara1 58 IDLNVLLSAAINFFL 72 (109)
T ss_dssp ECHHHHHHHHHHHHH
T ss_pred eeHHHHHHHHHHHHH
Confidence 344555555555443
No 2
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=8.50 E-value=1.5e+02 Score=15.17 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=25.2
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015969 239 HPKSCKFSVIVVTSISLALSVILAILVLILRNV 271 (397)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (397)
+.++..+.+..+.+.-..++++.=.+.+...++
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPW 39 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPW 39 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSST
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCcc
Confidence 457788888899998888888777666665554
No 3
>d1m56d_ f.23.8.1 (D:) Bacterial aa3 type cytochrome c oxidase subunit IV {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=7.17 E-value=1.8e+02 Score=15.07 Aligned_cols=32 Identities=6% Similarity=0.058 Sum_probs=17.2
Q ss_pred hccCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015969 235 LGAAHPKSCKFSVIVVTSISLALSVILAILVL 266 (397)
Q Consensus 235 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (397)
.|+-|.+.-.+.+.--+++..-.++.+.+++.
T Consensus 4 HG~MDi~vQEKTF~gFik~~t~~~i~~i~~li 35 (42)
T d1m56d_ 4 AGSMDITQQEKTFAGFVRMVTWAAVVIVAALI 35 (42)
T ss_dssp TTCSCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666555555555444443333
No 4
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=6.41 E-value=2.2e+02 Score=16.03 Aligned_cols=6 Identities=17% Similarity=0.766 Sum_probs=2.5
Q ss_pred HHHHHH
Q 015969 332 IPIGCL 337 (397)
Q Consensus 332 i~~~~~ 337 (397)
+|.+.+
T Consensus 17 lP~t~i 22 (64)
T d2iuba2 17 MPLTFI 22 (64)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
No 5
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.03 E-value=3e+02 Score=15.30 Aligned_cols=11 Identities=9% Similarity=-0.191 Sum_probs=4.4
Q ss_pred CcchHHHHHHH
Q 015969 17 KYDMLGVYLQR 27 (397)
Q Consensus 17 ~~~~~~~~~~~ 27 (397)
|.++.+++...
T Consensus 19 ~~~Ef~~ia~v 29 (56)
T d1rh5b_ 19 TKDEYLAVAKV 29 (56)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 34444433333
No 6
>d2fyuk1 f.23.15.1 (K:1-53) Subunit XI (6.4 kDa protein) of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase) {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.71 E-value=2.3e+02 Score=15.56 Aligned_cols=28 Identities=4% Similarity=0.048 Sum_probs=17.0
Q ss_pred HHhhhCCCCcchHHHHHHHHHHHHHHHH
Q 015969 9 CGQAYGAQKYDMLGVYLQRSAVILTATG 36 (397)
Q Consensus 9 is~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (397)
.++..|++..+.++.-+.+...+...-+
T Consensus 2 l~k~iG~k~~~ia~~wips~~~~G~a~g 29 (53)
T d2fyuk1 2 LTRFLGPRYRQLARNWVPTASLWGAVGA 29 (53)
T ss_dssp GGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHhhhhhhhhhhhh
Confidence 4677777776666666666555444443
No 7
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=4.54 E-value=2.8e+02 Score=14.43 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=21.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 015969 240 PKSCKFSVIVVTSISLALSVILAILVLILRNV 271 (397)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (397)
.++..+.+.+++..-..++++.=++.+..+|+
T Consensus 11 A~EfH~~~~~g~~~F~~iAvvAHiLvw~wrPW 42 (43)
T d1lghb_ 11 AIAVHDQFKTTFSAFIILAAVAHVLVWVWKPW 42 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45667777777777777777766666655544
No 8
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=4.21 E-value=2.9e+02 Score=13.96 Aligned_cols=31 Identities=23% Similarity=0.246 Sum_probs=22.1
Q ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015969 239 HPKSCKFSVIVVTSISLALSVILAILVLILR 269 (397)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (397)
+.++..+.+..+.+.-..++++.=.+.+...
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~t 38 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLT 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Confidence 4577888888888888888777655555443
No 9
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=3.58 E-value=6.7e+02 Score=17.34 Aligned_cols=33 Identities=12% Similarity=0.201 Sum_probs=23.1
Q ss_pred hhccCChhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 015969 234 ELGAAHPKSCKFSVIVVTSISLALSVILAILVL 266 (397)
Q Consensus 234 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (397)
+.|+-+.++.++..++=...++..+...+.+..
T Consensus 68 a~g~i~~~~~~~~l~kE~~vgll~G~~l~~i~~ 100 (173)
T d2yvxa3 68 ATRDLDLRDWRRVFLKEMGVGLLLGLTLSFLLV 100 (173)
T ss_dssp HTTCSCSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccccchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556677888888888888888777665543
No 10
>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit II {Escherichia coli [TaxId: 562]}
Probab=3.33 E-value=3.9e+02 Score=16.19 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=11.5
Q ss_pred hhHHHHHHHHhHHHHHH
Q 015969 163 SGLWDFLKLSTASAVML 179 (397)
Q Consensus 163 ~~~k~~l~~~~p~~~~~ 179 (397)
+...|+.-..+|..+-.
T Consensus 59 n~~lEi~WtiIP~iil~ 75 (91)
T d1fftb2 59 SNKVEAVVWTVPILIII 75 (91)
T ss_dssp CSHHHHHTTHHHHHHHH
T ss_pred CceehhhHHHHHHHHHH
Confidence 34567777888887643
Done!