Query 015971
Match_columns 397
No_of_seqs 149 out of 1037
Neff 4.0
Searched_HMMs 46136
Date Fri Mar 29 02:36:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015971.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015971hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK14099 glycogen synthase; Pr 100.0 3.1E-30 6.6E-35 263.9 12.8 118 275-396 1-124 (485)
2 PRK14098 glycogen synthase; Pr 100.0 9.6E-29 2.1E-33 253.2 12.5 120 274-396 2-134 (489)
3 PLN02939 transferase, transfer 99.9 6.5E-27 1.4E-31 255.8 12.9 117 275-396 479-603 (977)
4 PF08323 Glyco_transf_5: Starc 99.9 1.9E-27 4.2E-32 223.8 7.4 114 279-396 1-126 (245)
5 TIGR02095 glgA glycogen/starch 99.9 5.7E-26 1.2E-30 227.9 12.4 117 278-396 1-121 (473)
6 PLN02316 synthase/transferase 99.9 8.5E-24 1.8E-28 233.6 13.6 115 275-396 585-702 (1036)
7 PRK00654 glgA glycogen synthas 99.9 1.2E-22 2.7E-27 204.9 11.8 109 278-396 1-111 (466)
8 cd03791 GT1_Glycogen_synthase_ 99.9 6.3E-22 1.4E-26 196.9 11.9 115 279-396 1-122 (476)
9 COG0297 GlgA Glycogen synthase 99.8 3.8E-21 8.2E-26 199.2 10.4 115 278-396 1-121 (487)
10 TIGR02094 more_P_ylases alpha- 97.9 4.6E-05 1E-09 81.9 10.0 114 280-396 1-154 (601)
11 cd04299 GT1_Glycogen_Phosphory 97.4 0.00097 2.1E-08 74.0 11.1 111 280-396 88-241 (778)
12 PLN02871 UDP-sulfoquinovose:DA 96.4 0.008 1.7E-07 61.2 6.8 47 275-322 56-102 (465)
13 cd03802 GT1_AviGT4_like This f 96.1 0.0099 2.1E-07 55.3 5.6 46 278-323 1-48 (335)
14 PRK10307 putative glycosyl tra 95.8 0.013 2.8E-07 58.0 4.9 41 278-320 1-41 (412)
15 cd03805 GT1_ALG2_like This fam 95.1 0.035 7.6E-07 53.6 5.3 41 278-322 1-41 (392)
16 cd03794 GT1_wbuB_like This fam 94.0 0.063 1.4E-06 49.2 4.0 44 279-324 1-44 (394)
17 PLN02846 digalactosyldiacylgly 94.0 0.068 1.5E-06 56.4 4.7 45 276-322 3-48 (462)
18 cd03801 GT1_YqgM_like This fam 93.7 0.12 2.7E-06 46.5 5.3 44 279-324 1-44 (374)
19 PF13579 Glyco_trans_4_4: Glyc 93.4 0.098 2.1E-06 42.9 3.8 31 294-324 1-31 (160)
20 cd03817 GT1_UGDG_like This fam 93.2 0.13 2.8E-06 47.3 4.7 45 279-325 1-45 (374)
21 cd03814 GT1_like_2 This family 92.7 0.16 3.4E-06 46.9 4.5 43 279-323 1-43 (364)
22 cd03821 GT1_Bme6_like This fam 92.3 0.18 4E-06 46.1 4.3 44 279-324 1-44 (375)
23 cd04962 GT1_like_5 This family 91.8 0.19 4E-06 47.8 4.0 39 278-321 1-39 (371)
24 cd03795 GT1_like_4 This family 91.8 0.24 5.3E-06 46.2 4.6 42 279-322 1-42 (357)
25 cd03809 GT1_mtfB_like This fam 91.7 0.26 5.6E-06 45.7 4.7 46 279-325 1-46 (365)
26 cd03820 GT1_amsD_like This fam 91.7 0.36 7.7E-06 43.6 5.4 42 279-323 1-42 (348)
27 cd03796 GT1_PIG-A_like This fa 91.7 0.27 5.8E-06 48.8 5.0 42 279-322 1-42 (398)
28 cd03823 GT1_ExpE7_like This fa 91.5 0.31 6.8E-06 44.7 5.0 45 279-324 1-45 (359)
29 cd03825 GT1_wcfI_like This fam 90.9 0.39 8.5E-06 45.0 5.1 43 278-324 1-43 (365)
30 PF13439 Glyco_transf_4: Glyco 90.8 0.35 7.5E-06 40.3 4.2 36 290-325 8-43 (177)
31 cd04955 GT1_like_6 This family 90.6 0.42 9.1E-06 44.9 4.9 43 279-322 1-43 (363)
32 cd03807 GT1_WbnK_like This fam 89.9 0.48 1E-05 43.2 4.7 39 279-321 1-39 (365)
33 cd03784 GT1_Gtf_like This fami 88.9 0.51 1.1E-05 46.5 4.3 36 278-321 1-38 (401)
34 TIGR02149 glgA_Coryne glycogen 88.9 0.54 1.2E-05 45.4 4.4 42 278-321 1-42 (388)
35 TIGR03449 mycothiol_MshA UDP-N 88.8 0.43 9.3E-06 46.8 3.7 43 280-322 1-48 (405)
36 cd03811 GT1_WabH_like This fam 88.6 0.7 1.5E-05 41.7 4.6 42 279-324 1-42 (353)
37 cd04951 GT1_WbdM_like This fam 87.5 0.7 1.5E-05 43.2 4.1 39 279-321 1-39 (360)
38 cd01635 Glycosyltransferase_GT 87.3 0.76 1.7E-05 39.4 3.9 37 280-318 1-37 (229)
39 PF03033 Glyco_transf_28: Glyc 87.2 1.1 2.4E-05 37.6 4.7 29 293-321 6-36 (139)
40 cd03808 GT1_cap1E_like This fa 86.7 0.98 2.1E-05 41.0 4.4 39 279-323 1-39 (359)
41 cd03822 GT1_ecORF704_like This 86.4 1.1 2.5E-05 41.4 4.8 41 279-322 1-41 (366)
42 cd03800 GT1_Sucrose_synthase T 86.2 0.88 1.9E-05 43.5 4.0 44 279-322 1-49 (398)
43 TIGR01133 murG undecaprenyldip 82.9 2 4.3E-05 41.0 4.9 39 278-322 1-39 (348)
44 PRK09922 UDP-D-galactose:(gluc 82.9 1.9 4E-05 42.2 4.8 42 278-322 1-44 (359)
45 cd03812 GT1_CapH_like This fam 81.1 1.9 4.2E-05 40.5 4.0 41 279-323 1-41 (358)
46 TIGR02472 sucr_P_syn_N sucrose 80.9 2.6 5.7E-05 42.9 5.2 33 290-322 22-56 (439)
47 PRK13609 diacylglycerol glucos 78.2 3.4 7.4E-05 40.7 4.8 42 276-322 3-44 (380)
48 cd03792 GT1_Trehalose_phosphor 74.4 4.6 0.0001 39.4 4.6 39 279-321 1-39 (372)
49 PF13477 Glyco_trans_4_2: Glyc 72.7 5.5 0.00012 33.1 4.1 36 279-323 1-36 (139)
50 PRK00726 murG undecaprenyldiph 72.4 5.9 0.00013 38.5 4.8 40 277-322 1-40 (357)
51 cd03798 GT1_wlbH_like This fam 72.0 5.7 0.00012 36.1 4.3 42 280-322 1-42 (377)
52 PRK10125 putative glycosyl tra 71.4 6.7 0.00015 40.1 5.1 41 278-322 1-41 (405)
53 cd03799 GT1_amsK_like This is 67.9 9.1 0.0002 35.8 4.8 40 279-323 1-40 (355)
54 cd03819 GT1_WavL_like This fam 67.3 6.2 0.00013 37.1 3.6 33 289-321 5-37 (355)
55 PHA03392 egt ecdysteroid UDP-g 59.4 7.9 0.00017 41.2 3.0 39 278-321 21-59 (507)
56 PF02951 GSH-S_N: Prokaryotic 58.9 15 0.00032 32.5 4.1 87 278-367 1-91 (119)
57 TIGR01915 npdG NADPH-dependent 56.6 15 0.00033 34.2 4.1 28 293-320 6-33 (219)
58 PF01975 SurE: Survival protei 55.8 36 0.00078 32.2 6.5 27 299-325 15-41 (196)
59 PRK06718 precorrin-2 dehydroge 52.5 21 0.00045 33.5 4.3 32 290-322 13-44 (202)
60 PHA03003 palmytilated EEV memb 52.2 23 0.0005 36.2 4.9 46 278-323 230-279 (369)
61 TIGR02470 sucr_synth sucrose s 51.7 18 0.0004 41.1 4.4 46 277-322 255-319 (784)
62 KOG2130 Phosphatidylserine-spe 50.9 14 0.0003 38.4 3.1 37 98-144 321-357 (407)
63 COG1819 Glycosyl transferases, 50.5 16 0.00035 37.8 3.5 37 277-321 1-39 (406)
64 cd03818 GT1_ExpC_like This fam 50.4 15 0.00033 36.4 3.2 35 279-322 1-35 (396)
65 PF06564 YhjQ: YhjQ protein; 49.0 24 0.00051 34.8 4.2 34 278-317 1-36 (243)
66 PF00201 UDPGT: UDP-glucoronos 48.7 8.2 0.00018 39.6 1.1 28 294-321 10-37 (500)
67 PRK06249 2-dehydropantoate 2-r 48.6 25 0.00054 34.5 4.4 35 275-320 3-37 (313)
68 TIGR02468 sucrsPsyn_pln sucros 47.1 31 0.00067 40.6 5.4 47 276-322 168-225 (1050)
69 KOG1192 UDP-glucuronosyl and U 45.6 32 0.0007 35.1 4.8 41 277-324 6-46 (496)
70 COG0569 TrkA K+ transport syst 43.2 20 0.00044 34.1 2.7 31 294-324 6-36 (225)
71 TIGR01380 glut_syn glutathione 42.4 29 0.00064 34.4 3.8 43 278-323 1-43 (312)
72 PF01972 SDH_sah: Serine dehyd 42.1 25 0.00055 35.6 3.3 31 292-322 99-129 (285)
73 cd03785 GT1_MurG MurG is an N- 41.4 45 0.00096 31.9 4.8 29 294-322 10-38 (350)
74 PRK06522 2-dehydropantoate 2-r 39.2 42 0.00091 32.0 4.2 23 297-319 9-31 (304)
75 PRK07454 short chain dehydroge 39.1 43 0.00093 30.4 4.1 33 277-318 5-37 (241)
76 TIGR01007 eps_fam capsular exo 38.2 52 0.0011 29.8 4.5 37 277-317 16-52 (204)
77 PRK06756 flavodoxin; Provision 37.0 69 0.0015 27.8 4.9 37 277-318 1-37 (148)
78 PF02441 Flavoprotein: Flavopr 36.8 60 0.0013 27.9 4.4 35 278-320 1-36 (129)
79 PRK05246 glutathione synthetas 36.6 41 0.00089 33.2 3.8 44 277-323 1-44 (316)
80 PRK08655 prephenate dehydrogen 36.6 41 0.00088 35.3 4.0 28 293-320 6-33 (437)
81 cd00138 PLDc Phospholipase D. 36.3 70 0.0015 27.8 4.9 46 278-325 35-80 (176)
82 KOG1111 N-acetylglucosaminyltr 34.8 38 0.00083 35.9 3.3 45 278-324 1-45 (426)
83 PRK09730 putative NAD(P)-bindi 34.2 58 0.0013 29.3 4.1 27 293-319 7-33 (247)
84 PRK09134 short chain dehydroge 33.6 83 0.0018 29.0 5.1 24 294-317 16-39 (258)
85 PRK11199 tyrA bifunctional cho 32.5 33 0.00073 35.0 2.5 27 294-320 105-131 (374)
86 PRK06753 hypothetical protein; 32.4 60 0.0013 31.8 4.2 30 278-318 1-30 (373)
87 PRK13982 bifunctional SbtC-lik 31.6 1.6E+02 0.0035 31.8 7.5 36 277-320 70-106 (475)
88 COG0451 WcaG Nucleoside-diphos 31.2 42 0.0009 31.4 2.8 32 291-322 4-35 (314)
89 TIGR01777 yfcH conserved hypot 31.1 44 0.00096 31.0 2.9 29 291-319 2-30 (292)
90 PRK10964 ADP-heptose:LPS hepto 31.1 79 0.0017 30.8 4.7 35 278-320 1-39 (322)
91 PF13241 NAD_binding_7: Putati 30.5 41 0.00089 27.9 2.3 28 293-321 13-40 (103)
92 PLN02662 cinnamyl-alcohol dehy 30.3 57 0.0012 31.0 3.6 27 292-318 9-35 (322)
93 PF03358 FMN_red: NADPH-depend 30.2 1E+02 0.0022 26.5 4.8 41 278-321 1-41 (152)
94 PLN00198 anthocyanidin reducta 30.1 1E+02 0.0022 29.9 5.3 27 292-318 14-40 (338)
95 COG0287 TyrA Prephenate dehydr 30.0 41 0.0009 33.5 2.6 25 293-317 8-32 (279)
96 TIGR01426 MGT glycosyltransfer 29.8 43 0.00092 33.3 2.7 28 294-321 4-33 (392)
97 PF07736 CM_1: Chorismate muta 29.8 48 0.001 29.7 2.7 28 79-117 8-35 (118)
98 COG2144 Selenophosphate synthe 29.7 32 0.00069 35.4 1.8 28 92-122 186-213 (324)
99 COG0702 Predicted nucleoside-d 29.5 48 0.001 30.3 2.8 35 290-324 3-37 (275)
100 PF12076 Wax2_C: WAX2 C-termin 28.9 55 0.0012 30.9 3.1 25 293-317 4-28 (164)
101 PF13528 Glyco_trans_1_3: Glyc 28.8 85 0.0019 29.9 4.5 36 278-322 1-38 (318)
102 PRK10037 cell division protein 28.0 73 0.0016 30.1 3.8 34 278-317 1-36 (250)
103 PRK12825 fabG 3-ketoacyl-(acyl 27.8 61 0.0013 28.9 3.1 28 292-319 11-38 (249)
104 CHL00175 minD septum-site dete 27.6 1E+02 0.0022 29.5 4.8 34 278-317 15-50 (281)
105 PRK10675 UDP-galactose-4-epime 26.8 56 0.0012 31.4 2.8 27 292-318 5-31 (338)
106 TIGR00715 precor6x_red precorr 26.8 95 0.0021 30.5 4.5 25 293-318 6-30 (256)
107 TIGR01963 PHB_DH 3-hydroxybuty 26.6 61 0.0013 29.4 2.9 28 292-319 6-33 (255)
108 PRK08305 spoVFB dipicolinate s 26.5 74 0.0016 30.4 3.6 30 291-320 11-42 (196)
109 PF03446 NAD_binding_2: NAD bi 26.1 68 0.0015 28.5 3.1 24 295-318 8-31 (163)
110 PRK05708 2-dehydropantoate 2-r 25.8 91 0.002 30.8 4.2 33 277-320 2-34 (305)
111 PRK10916 ADP-heptose:LPS hepto 25.8 78 0.0017 31.3 3.7 36 278-321 1-40 (348)
112 PLN02695 GDP-D-mannose-3',5'-e 25.1 1.4E+02 0.0029 30.1 5.3 33 276-318 20-52 (370)
113 PRK07236 hypothetical protein; 25.0 1E+02 0.0023 30.7 4.5 33 275-318 4-36 (386)
114 TIGR03649 ergot_EASG ergot alk 24.9 62 0.0013 30.5 2.7 29 292-320 4-32 (285)
115 PRK12829 short chain dehydroge 24.9 62 0.0013 29.6 2.7 26 293-318 17-42 (264)
116 PRK08163 salicylate hydroxylas 24.7 1.1E+02 0.0023 30.4 4.5 31 277-318 4-34 (396)
117 PF13460 NAD_binding_10: NADH( 24.7 77 0.0017 27.5 3.1 31 292-322 3-33 (183)
118 PRK05562 precorrin-2 dehydroge 24.7 1E+02 0.0022 30.0 4.1 33 289-322 27-59 (223)
119 PF01256 Carb_kinase: Carbohyd 24.6 75 0.0016 30.8 3.3 32 281-312 172-203 (242)
120 PRK07538 hypothetical protein; 24.4 94 0.002 31.3 4.1 30 278-318 1-30 (413)
121 TIGR03088 stp2 sugar transfera 23.9 1E+02 0.0022 29.8 4.1 37 278-318 2-38 (374)
122 PRK06194 hypothetical protein; 23.6 75 0.0016 29.7 3.0 26 292-317 11-36 (287)
123 PRK06138 short chain dehydroge 23.6 73 0.0016 28.9 2.9 27 292-318 10-36 (252)
124 cd02033 BchX Chlorophyllide re 23.4 1.6E+02 0.0035 30.1 5.5 35 276-317 29-65 (329)
125 PRK05693 short chain dehydroge 23.4 1.1E+02 0.0023 28.6 4.0 25 294-318 8-32 (274)
126 PRK09271 flavodoxin; Provision 23.4 1.6E+02 0.0034 26.2 4.9 35 278-317 1-35 (160)
127 TIGR03466 HpnA hopanoid-associ 23.3 67 0.0014 30.3 2.6 28 291-318 4-31 (328)
128 PRK09739 hypothetical protein; 23.2 1.4E+02 0.0031 27.3 4.7 40 276-318 2-41 (199)
129 PF08372 PRT_C: Plant phosphor 23.1 63 0.0014 30.0 2.3 32 83-116 41-72 (156)
130 PLN02842 nucleotide kinase 23.1 1.2E+02 0.0026 33.0 4.8 47 274-320 258-307 (505)
131 PRK05868 hypothetical protein; 23.0 1.1E+02 0.0024 30.7 4.3 23 294-318 9-31 (372)
132 PRK08267 short chain dehydroge 22.4 1.2E+02 0.0026 27.9 4.1 26 293-318 7-32 (260)
133 PRK13608 diacylglycerol glucos 22.3 1.5E+02 0.0032 29.9 5.0 32 276-312 4-35 (391)
134 PRK06101 short chain dehydroge 22.3 79 0.0017 29.0 2.8 26 293-318 7-32 (240)
135 PLN02686 cinnamoyl-CoA reducta 22.3 86 0.0019 31.4 3.3 26 293-318 59-84 (367)
136 KOG1200 Mitochondrial/plastidi 22.2 51 0.0011 32.7 1.6 46 277-322 143-197 (256)
137 PHA02820 phospholipase-D-like 21.9 1E+02 0.0022 32.5 3.8 46 279-324 233-283 (424)
138 PLN02253 xanthoxin dehydrogena 21.9 81 0.0018 29.5 2.9 26 293-318 24-49 (280)
139 PLN00141 Tic62-NAD(P)-related 21.9 1.9E+02 0.0041 26.9 5.3 25 294-318 24-48 (251)
140 PRK07774 short chain dehydroge 21.9 84 0.0018 28.5 2.9 28 291-318 10-37 (250)
141 PF01494 FAD_binding_3: FAD bi 21.8 94 0.002 29.2 3.3 24 294-319 9-32 (356)
142 PRK08017 oxidoreductase; Provi 21.7 84 0.0018 28.6 2.9 28 291-318 6-33 (256)
143 PF02374 ArsA_ATPase: Anion-tr 21.7 1.2E+02 0.0026 30.4 4.1 34 278-318 1-36 (305)
144 PLN02989 cinnamyl-alcohol dehy 21.5 91 0.002 29.9 3.2 27 292-318 10-36 (325)
145 PRK12429 3-hydroxybutyrate deh 21.3 86 0.0019 28.5 2.8 28 291-318 8-35 (258)
146 CHL00194 ycf39 Ycf39; Provisio 21.2 89 0.0019 30.3 3.1 26 293-318 6-31 (317)
147 PRK06550 fabG 3-ketoacyl-(acyl 21.1 88 0.0019 28.2 2.8 26 293-318 11-36 (235)
148 PLN02712 arogenate dehydrogena 21.0 3.1E+02 0.0066 30.8 7.5 34 276-320 51-84 (667)
149 PRK07231 fabG 3-ketoacyl-(acyl 21.0 87 0.0019 28.3 2.8 27 292-318 10-36 (251)
150 PRK06914 short chain dehydroge 20.9 88 0.0019 29.2 2.9 27 292-318 8-34 (280)
151 PRK06180 short chain dehydroge 20.9 86 0.0019 29.5 2.8 26 293-318 10-35 (277)
152 CHL00072 chlL photochlorophyll 20.9 1.2E+02 0.0027 29.8 4.1 24 294-317 9-34 (290)
153 PRK06849 hypothetical protein; 20.8 1.3E+02 0.0029 30.2 4.3 35 276-320 3-37 (389)
154 PRK12384 sorbitol-6-phosphate 20.8 92 0.002 28.6 2.9 28 291-318 6-33 (259)
155 PLN02166 dTDP-glucose 4,6-dehy 20.7 1.9E+02 0.0041 30.3 5.5 35 274-318 117-151 (436)
156 TIGR01179 galE UDP-glucose-4-e 20.6 90 0.0019 29.2 2.9 27 291-317 3-29 (328)
157 TIGR01830 3oxo_ACP_reduc 3-oxo 20.5 96 0.0021 27.7 2.9 27 292-318 3-29 (239)
158 PRK07814 short chain dehydroge 20.3 90 0.002 29.0 2.8 27 292-318 15-41 (263)
159 PRK06179 short chain dehydroge 20.3 92 0.002 28.9 2.9 28 293-320 10-37 (270)
160 TIGR03219 salicylate_mono sali 20.2 1.3E+02 0.0028 30.3 4.1 30 278-318 1-31 (414)
161 PRK05565 fabG 3-ketoacyl-(acyl 20.1 98 0.0021 27.8 2.9 25 293-317 11-35 (247)
162 PLN02650 dihydroflavonol-4-red 20.1 1.1E+02 0.0023 30.0 3.4 28 291-318 9-36 (351)
No 1
>PRK14099 glycogen synthase; Provisional
Probab=99.97 E-value=3.1e-30 Score=263.92 Aligned_cols=118 Identities=27% Similarity=0.300 Sum_probs=97.4
Q ss_pred CCCceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCC-CCeEEEEEe-CCcceEEEEEEEEE
Q 015971 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQD-TGIRKRYRV-DRQDIEVAYFQAYI 352 (397)
Q Consensus 275 ~n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~~~~d-~~~~~~i~~-~G~~~~v~V~~~~~ 352 (397)
|++|||||||+||+||+||||||||+++||+||+++||+|+||||+|+++..... ......+.+ .+ ..++++++..
T Consensus 1 ~~~~~il~v~~E~~p~~k~ggl~dv~~~lp~~l~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 78 (485)
T PRK14099 1 MTPLRVLSVASEIFPLIKTGGLADVAGALPAALKAHGVEVRTLVPGYPAVLAGIEDAEQVHSFPDLFG--GPARLLAARA 78 (485)
T ss_pred CCCcEEEEEEeccccccCCCcHHHHHHHHHHHHHHCCCcEEEEeCCCcchhhhhcCceEEEEEeeeCC--ceEEEEEEEe
Confidence 3569999999999999999999999999999999999999999999999853321 111112221 12 2578899888
Q ss_pred CCceEEEeeCcccccCCCccccC----CCCCCccchHHHHHhhhhccc
Q 015971 353 DGVDFVFLDSPLFRHLGNNIYGG----GREVRNSFIDSPLFCLVEHIS 396 (397)
Q Consensus 353 ~GV~vYFIDnp~fF~R~g~IYgg----~y~D~~NaeRFAfFSkAALE~ 396 (397)
+||++||||+|.||+|++++|++ +|.| |++||+|||+||||+
T Consensus 79 ~~v~~~~~~~~~~f~r~~~~y~~~~~~~~~d--~~~rf~~f~~a~~~~ 124 (485)
T PRK14099 79 GGLDLFVLDAPHLYDRPGNPYVGPDGKDWPD--NAQRFAALARAAAAI 124 (485)
T ss_pred CCceEEEEeChHhhCCCCCCCCCccCCCCCc--HHHHHHHHHHHHHHH
Confidence 99999999999999987668963 5778 999999999999984
No 2
>PRK14098 glycogen synthase; Provisional
Probab=99.96 E-value=9.6e-29 Score=253.17 Aligned_cols=120 Identities=15% Similarity=0.236 Sum_probs=93.4
Q ss_pred CCCCceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCC----CCCeEEEE--EeCCcceEEEE
Q 015971 274 GANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQ----DTGIRKRY--RVDRQDIEVAY 347 (397)
Q Consensus 274 ~~n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~~~~----d~~~~~~i--~~~G~~~~v~V 347 (397)
++++|||||||+||+||+||||||||+++||+||+++||+|+||||+|+++.... .......+ .+++....+.+
T Consensus 2 ~~~~~~il~v~~E~~p~~k~Ggl~dv~~~Lp~al~~~g~~v~v~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (489)
T PRK14098 2 SRRNFKVLYVSGEVSPFVRVSALADFMASFPQALEEEGFEARIMMPKYGTINDRKFRLHDVLRLSDIEVPLKEKTDLLHV 81 (489)
T ss_pred CCCCcEEEEEeecchhhcccchHHHHHHHHHHHHHHCCCeEEEEcCCCCchhhhhhccccceEEEEEEEeecCeeEEEEE
Confidence 4677999999999999999999999999999999999999999999999986431 11111122 23332222333
Q ss_pred EEEEEC--CceEEEeeCcccccCCCccccC-----CCCCCccchHHHHHhhhhccc
Q 015971 348 FQAYID--GVDFVFLDSPLFRHLGNNIYGG-----GREVRNSFIDSPLFCLVEHIS 396 (397)
Q Consensus 348 ~~~~~~--GV~vYFIDnp~fF~R~g~IYgg-----~y~D~~NaeRFAfFSkAALE~ 396 (397)
+....+ ||++|||+||.||+|+ ++|++ +|.| |++||++||+|++|.
T Consensus 82 ~~~~~~~~~v~~~~~~~~~~f~r~-~~y~~~~~g~~~~d--~~~rf~~f~~a~l~~ 134 (489)
T PRK14098 82 KVTALPSSKIQTYFLYNEKYFKRN-GLFTDMSLGGDLKG--SAEKVIFFNVGVLET 134 (489)
T ss_pred EEecccCCCceEEEEeCHHHcCCC-CcCCCCccCCCCCc--HHHHHHHHHHHHHHH
Confidence 333343 7999999999999975 69975 3678 999999999999974
No 3
>PLN02939 transferase, transferring glycosyl groups
Probab=99.94 E-value=6.5e-27 Score=255.82 Aligned_cols=117 Identities=25% Similarity=0.395 Sum_probs=96.8
Q ss_pred CCCceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCC--CC---CeEEEEEeCCcceEEEEEE
Q 015971 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQ--DT---GIRKRYRVDRQDIEVAYFQ 349 (397)
Q Consensus 275 ~n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~~~~--d~---~~~~~i~~~G~~~~v~V~~ 349 (397)
++.|||||||+||+||+||||||||+++||+||+++||+|+||||+|+++.... .. .....+.++|....++||.
T Consensus 479 ~~~mkILfVasE~aP~aKtGGLaDVv~sLPkAL~~~GhdV~VIlP~Y~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~v~~ 558 (977)
T PLN02939 479 SSGLHIVHIAAEMAPVAKVGGLADVVSGLGKALQKKGHLVEIVLPKYDCMQYDQIRNLKVLDVVVESYFDGNLFKNKIWT 558 (977)
T ss_pred CCCCEEEEEEcccccccccccHHHHHHHHHHHHHHcCCeEEEEeCCCcccChhhhhcccccceEEEEeecCceeEEEEEE
Confidence 567999999999999999999999999999999999999999999999885221 11 1122224566556689999
Q ss_pred EEECCceEEEeeCc---ccccCCCccccCCCCCCccchHHHHHhhhhccc
Q 015971 350 AYIDGVDFVFLDSP---LFRHLGNNIYGGGREVRNSFIDSPLFCLVEHIS 396 (397)
Q Consensus 350 ~~~~GV~vYFIDnp---~fF~R~g~IYgg~y~D~~NaeRFAfFSkAALE~ 396 (397)
+.++||++|||+++ .||.|+ .+|| +.| |++||+||||||||.
T Consensus 559 ~~~~GV~vyfId~~~~~~fF~R~-~iYg--~~D--n~~RF~~FsrAaLe~ 603 (977)
T PLN02939 559 GTVEGLPVYFIEPQHPSKFFWRA-QYYG--EHD--DFKRFSYFSRAALEL 603 (977)
T ss_pred EEECCeeEEEEecCCchhccCCC-CCCC--Ccc--HHHHHHHHHHHHHHH
Confidence 99999999999964 389875 7997 458 999999999999984
No 4
>PF08323 Glyco_transf_5: Starch synthase catalytic domain; InterPro: IPR013534 This region represents the catalytic domain of glycogen (or starch) synthases that use ADP-glucose (2.4.1.21 from EC), rather than UDP-glucose (2.4.1.11 from EC) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.; PDB: 2BIS_C 3L01_A 3FRO_A 2R4U_A 2R4T_A 3D1J_A 3COP_A 3GUH_A 2QZS_A 3CX4_A ....
Probab=99.94 E-value=1.9e-27 Score=223.80 Aligned_cols=114 Identities=33% Similarity=0.509 Sum_probs=87.8
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCC-CCeEE--------EEEeCCcceEEEEEE
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQD-TGIRK--------RYRVDRQDIEVAYFQ 349 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~~~~d-~~~~~--------~i~~~G~~~~v~V~~ 349 (397)
||||||+||+||+||||||||+++||+||+++||+|+||||+|+.+..... ..... .+.+.. ...+.+++
T Consensus 1 kIl~vt~E~~P~~k~GGLgdv~~~L~kaL~~~G~~V~Vi~P~y~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~v~~ 79 (245)
T PF08323_consen 1 KILMVTSEYAPFAKVGGLGDVVGSLPKALAKQGHDVRVIMPKYGFIDEEYFQLEPVRRLSVPFGGPVPVGV-WYEVRVYR 79 (245)
T ss_dssp EEEEE-S-BTTTB-SSHHHHHHHHHHHHHHHTT-EEEEEEE-THHHHHHCTTEEEEEEES-STTCEEEEE-----EEEEE
T ss_pred CEEEEEcccCcccccCcHhHHHHHHHHHHHhcCCeEEEEEccchhhhhhhhcceEEEEecccccccccccc-ceEEEEEE
Confidence 799999999999999999999999999999999999999999987754321 11111 122222 26788999
Q ss_pred EEECCceEEEeeCcccccCCCccccC---CCCCCccchHHHHHhhhhccc
Q 015971 350 AYIDGVDFVFLDSPLFRHLGNNIYGG---GREVRNSFIDSPLFCLVEHIS 396 (397)
Q Consensus 350 ~~~~GV~vYFIDnp~fF~R~g~IYgg---~y~D~~NaeRFAfFSkAALE~ 396 (397)
...+||++|||+++.||+|. ++|++ +|.| |++||++||+||+|.
T Consensus 80 ~~~~~v~v~~i~~~~~f~r~-~iY~~~~~~~~d--~~~rf~~fs~a~le~ 126 (245)
T PF08323_consen 80 YPVDGVPVYFIDNPEYFDRP-GIYGDNGGDYPD--NAERFAFFSRAALEL 126 (245)
T ss_dssp EEETTEEEEEEESHHHHGSS-SSSBSTSSBHTT--HHHHHHHHHHHHHHH
T ss_pred EEcCCccEEEecChhhcccc-ceeccCCCcchh--HHHHHHHHHHHHHHH
Confidence 99999999999999999876 59986 5678 999999999999974
No 5
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=99.93 E-value=5.7e-26 Score=227.94 Aligned_cols=117 Identities=36% Similarity=0.522 Sum_probs=101.6
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCC----CeEEEEEeCCcceEEEEEEEEEC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDT----GIRKRYRVDRQDIEVAYFQAYID 353 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~~~~d~----~~~~~i~~~G~~~~v~V~~~~~~ 353 (397)
|||||||+|++||+||||||||+++||+||+++||+|+||||+|+++...... .....+.+++....++++....+
T Consensus 1 m~i~~vs~E~~P~~k~GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (473)
T TIGR02095 1 MRVLFVAAEMAPFAKTGGLADVVGALPKALAALGHDVRVLLPAYGCIEDEVDDQVKVVELVDLSVGPRTLYVKVFEGVVE 80 (473)
T ss_pred CeEEEEEeccccccCcCcHHHHHHHHHHHHHHcCCeEEEEecCCcChhhhhccCeEEEEEEEEeecCceeEEEEEEEEEC
Confidence 89999999999999999999999999999999999999999999988643211 12224456777888999999999
Q ss_pred CceEEEeeCcccccCCCccccCCCCCCccchHHHHHhhhhccc
Q 015971 354 GVDFVFLDSPLFRHLGNNIYGGGREVRNSFIDSPLFCLVEHIS 396 (397)
Q Consensus 354 GV~vYFIDnp~fF~R~g~IYgg~y~D~~NaeRFAfFSkAALE~ 396 (397)
||++|||+++.||+|++.+|++++.| |++||++||+|+++.
T Consensus 81 ~v~~~~i~~~~~~~r~~~~y~~~~~d--~~~r~~~f~~a~~~~ 121 (473)
T TIGR02095 81 GVPVYFIDNPSLFDRPGGIYGDDYPD--NAERFAFFSRAAAEL 121 (473)
T ss_pred CceEEEEECHHHcCCCCCCCCCCCCC--HHHHHHHHHHHHHHH
Confidence 99999999999998755699977778 999999999999874
No 6
>PLN02316 synthase/transferase
Probab=99.90 E-value=8.5e-24 Score=233.63 Aligned_cols=115 Identities=23% Similarity=0.389 Sum_probs=95.1
Q ss_pred CCCceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCCeE--EEEEeCCcceEEEEEEEEE
Q 015971 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIR--KRYRVDRQDIEVAYFQAYI 352 (397)
Q Consensus 275 ~n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~~~~d~~~~--~~i~~~G~~~~v~V~~~~~ 352 (397)
.++|+|||||+||+||+||||||||+++||+||+++||+|+||||+|+++......... ..+.+++ ..+.|+.+..
T Consensus 585 ~~pM~Il~VSsE~~P~aKvGGLgDVV~sLp~ALa~~Gh~V~VitP~Y~~i~~~~~~~~~~~~~~~~~~--~~~~v~~~~~ 662 (1036)
T PLN02316 585 EPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLNHNVDIILPKYDCLNLSHVKDLHYQRSYSWGG--TEIKVWFGKV 662 (1036)
T ss_pred CCCcEEEEEEcccCCCCCcCcHHHHHHHHHHHHHHcCCEEEEEecCCcccchhhcccceEEEEeccCC--EEEEEEEEEE
Confidence 45699999999999999999999999999999999999999999999987532211222 2233333 4678999999
Q ss_pred CCceEEEeeCc-ccccCCCccccCCCCCCccchHHHHHhhhhccc
Q 015971 353 DGVDFVFLDSP-LFRHLGNNIYGGGREVRNSFIDSPLFCLVEHIS 396 (397)
Q Consensus 353 ~GV~vYFIDnp-~fF~R~g~IYgg~y~D~~NaeRFAfFSkAALE~ 396 (397)
+||++|||+++ .||.| +.+|| |.| |++||+|||+|+||.
T Consensus 663 ~GV~vyfl~~~~~~F~r-~~~Yg--~~D--d~~RF~~F~~Aale~ 702 (1036)
T PLN02316 663 EGLSVYFLEPQNGMFWA-GCVYG--CRN--DGERFGFFCHAALEF 702 (1036)
T ss_pred CCcEEEEEeccccccCC-CCCCC--chh--HHHHHHHHHHHHHHH
Confidence 99999999998 59986 46897 568 899999999999974
No 7
>PRK00654 glgA glycogen synthase; Provisional
Probab=99.88 E-value=1.2e-22 Score=204.89 Aligned_cols=109 Identities=35% Similarity=0.448 Sum_probs=89.0
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCCeEEEEEeCCcceEEEEEEE--EECCc
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQDIEVAYFQA--YIDGV 355 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~~~~d~~~~~~i~~~G~~~~v~V~~~--~~~GV 355 (397)
|||||||+||+||+|+||||||+++||++|+++||+|+||||+|+++.... ........+ ..++|+.+ ..+||
T Consensus 1 m~i~~vs~e~~P~~k~GGl~~~v~~L~~~L~~~G~~V~v~~p~y~~~~~~~-~~~~~~~~~----~~~~~~~~~~~~~gv 75 (466)
T PRK00654 1 MKILFVASECAPLIKTGGLGDVVGALPKALAALGHDVRVLLPGYPAIREKL-RDAQVVGRL----DLFTVLFGHLEGDGV 75 (466)
T ss_pred CeEEEEEcccccCcccCcHHHHHHHHHHHHHHCCCcEEEEecCCcchhhhh-cCceEEEEe----eeEEEEEEeEEcCCc
Confidence 899999999999999999999999999999999999999999999875321 111111112 12566666 45899
Q ss_pred eEEEeeCcccccCCCccccCCCCCCccchHHHHHhhhhccc
Q 015971 356 DFVFLDSPLFRHLGNNIYGGGREVRNSFIDSPLFCLVEHIS 396 (397)
Q Consensus 356 ~vYFIDnp~fF~R~g~IYgg~y~D~~NaeRFAfFSkAALE~ 396 (397)
++|||++|.||+|. .+|+ +.| |++||+|||+|+++.
T Consensus 76 ~v~~v~~~~~~~~~-~~y~--~~d--~~~r~~~f~~~~~~~ 111 (466)
T PRK00654 76 PVYLIDAPHLFDRP-SGYG--YPD--NGERFAFFSWAAAEF 111 (466)
T ss_pred eEEEEeCHHHcCCC-CCCC--CcC--hHHHHHHHHHHHHHH
Confidence 99999999999875 6897 567 899999999999873
No 8
>cd03791 GT1_Glycogen_synthase_DULL1_like This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms.
Probab=99.87 E-value=6.3e-22 Score=196.86 Aligned_cols=115 Identities=37% Similarity=0.516 Sum_probs=95.0
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCCeE----EEEEeCCcceEEEEEEEEECC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIR----KRYRVDRQDIEVAYFQAYIDG 354 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~~~~d~~~~----~~i~~~G~~~~v~V~~~~~~G 354 (397)
||||||+|++||+||||||||+++||+||+++||+|+||||+|+++......... ..+.+.+....++++....+|
T Consensus 1 ~Il~v~~E~~p~~k~GGl~~~~~~L~~aL~~~G~~V~Vi~p~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (476)
T cd03791 1 KVLFVASEVAPFAKTGGLGDVVGALPKALAKLGHDVRVIMPKYGRILDELRGQLLVLRLFGVPVGGRPEYVGVFELPVDG 80 (476)
T ss_pred CEEEEEccccccccCCcHHHHHHHHHHHHHHCCCeEEEEecCCcchhhHhccCeEEEEEEeeccCCceeEEEEEEEEeCC
Confidence 6999999999999999999999999999999999999999999988643221111 123456777889999999999
Q ss_pred ceEEEeeCcccccCCCcccc---CCCCCCccchHHHHHhhhhccc
Q 015971 355 VDFVFLDSPLFRHLGNNIYG---GGREVRNSFIDSPLFCLVEHIS 396 (397)
Q Consensus 355 V~vYFIDnp~fF~R~g~IYg---g~y~D~~NaeRFAfFSkAALE~ 396 (397)
|++|||++|.||.+. .+|+ .+|.| +++||++||+|+++.
T Consensus 81 v~~~~l~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~f~~~~~~~ 122 (476)
T cd03791 81 VPVYFLDNPDYFDRP-GLYDDSGYDYED--NAERFALFSRAALEL 122 (476)
T ss_pred ceEEEEcChHHcCCC-CCCCccCCCCcc--HHHHHHHHHHHHHHH
Confidence 999999999999764 4442 23567 899999999999863
No 9
>COG0297 GlgA Glycogen synthase [Carbohydrate transport and metabolism]
Probab=99.84 E-value=3.8e-21 Score=199.23 Aligned_cols=115 Identities=31% Similarity=0.412 Sum_probs=88.7
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCCeEE----EEEeCCcceEEEEEEEEEC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRK----RYRVDRQDIEVAYFQAYID 353 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~~~~d~~~~~----~i~~~G~~~~v~V~~~~~~ 353 (397)
|||++||+|++||+||||||||+++||++|+++|++|+|+||.|+.+.+......+. .+.+++....+.+.....+
T Consensus 1 M~Il~v~~E~~p~vK~GGLaDv~~alpk~L~~~g~~v~v~lP~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (487)
T COG0297 1 MKILFVASEIFPFVKTGGLADVVGALPKALAKRGVDVRVLLPSYPKVQKEWRDLLKVVGKFGVLKGGRAQLFIVKEYGKD 80 (487)
T ss_pred CcceeeeeeecCccccCcHHHHHHHhHHHHHhcCCeEEEEcCCchhhhhhhccccceeeEeeeeecccceEEEEEeeccc
Confidence 899999999999999999999999999999999999999999999554432221111 2223444334444444434
Q ss_pred -CceEEEeeCcccccCC-CccccCCCCCCccchHHHHHhhhhccc
Q 015971 354 -GVDFVFLDSPLFRHLG-NNIYGGGREVRNSFIDSPLFCLVEHIS 396 (397)
Q Consensus 354 -GV~vYFIDnp~fF~R~-g~IYgg~y~D~~NaeRFAfFSkAALE~ 396 (397)
||++||||+|.||+|. ...|+ +.| |.+||++||+|++|.
T Consensus 81 ~~v~~~lid~~~~f~r~~~~~~~--~~d--~~~Rf~~F~~a~~~~ 121 (487)
T COG0297 81 GGVDLYLIDNPALFKRPDSTLYG--YYD--NAERFAFFSLAAAEL 121 (487)
T ss_pred CCCcEEEecChhhcCccccccCC--CCc--HHHHHHHHHHHHHHH
Confidence 4999999999999873 23554 567 899999999999874
No 10
>TIGR02094 more_P_ylases alpha-glucan phosphorylases. This family consists of known phosphorylases, and homologs believed to share the function of using inorganic phosphate to cleave an alpha 1,4 linkage between the terminal glucose residue and the rest of the polymer (maltodextrin, glycogen, etc.). The name of the glucose storage polymer substrate, and therefore the name of this enzyme, depends on the chain lengths and branching patterns. A number of the members of this family have been shown to operate on small maltodextrins, as may be obtained by utilization of exogenous sources. This family represents a distinct clade from the related family modeled by TIGR02093/PF00343.
Probab=97.91 E-value=4.6e-05 Score=81.90 Aligned_cols=114 Identities=21% Similarity=0.341 Sum_probs=83.6
Q ss_pred EEEEecccc-----cccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCC-CC------CCC------CC-----------
Q 015971 280 VILVAAECG-----PWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN-YA------EPQ------DT----------- 330 (397)
Q Consensus 280 ILfVASE~a-----PfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~-i~------~~~------d~----------- 330 (397)
|.+.|.|++ |. =.||||=.+|+.-++++.+|..+..|-=+|+. +. +.+ .+
T Consensus 1 ~ayf~~E~g~~~~~p~-ysGGLG~LAgd~l~saa~l~~p~~g~gl~Y~~Gyf~Q~i~~~g~Q~e~~~~~~~~~~p~~~~~ 79 (601)
T TIGR02094 1 VAYFSMEYGLHESLPI-YSGGLGVLAGDHLKSASDLGLPLVAVGLLYKQGYFRQRLDEDGWQQEAYPNNDFESLPIEKVL 79 (601)
T ss_pred CeEEeeccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCeEEEEeccCCCceeEEECCCCceeecCCccccCCCceEEEe
Confidence 456677754 43 56999999999999999999999999888872 11 100 00
Q ss_pred -----CeEEEEEeCCcceEEEEEEEEECCceEEEeeCcc----cccCCC--ccccCCCCCCccchHHHHHhhhhccc
Q 015971 331 -----GIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPL----FRHLGN--NIYGGGREVRNSFIDSPLFCLVEHIS 396 (397)
Q Consensus 331 -----~~~~~i~~~G~~~~v~V~~~~~~GV~vYFIDnp~----fF~R~g--~IYgg~y~D~~NaeRFAfFSkAALE~ 396 (397)
.+...+.+.|....+++|+...++|++||||++. +|+|.. .+|++++.+ ..+||+|||+|+++.
T Consensus 80 ~~~g~~~~~~v~i~g~~~~~rlw~~~~~~v~lylld~~~~~n~~~~R~it~~LY~~D~~~--R~~Qe~fl~~a~l~~ 154 (601)
T TIGR02094 80 DTDGKWLKISVRIRGRDVYAKVWRVQVGRVPLYLLDTNIPENSEDDRWITGRLYGGDKEM--RIAQEIVLGIGGVRA 154 (601)
T ss_pred cCCCCeEEEEEecCCcEEEEEEEEEEeCCCCEEEecCCCcccchhhcCccCCCCCCCHHH--HHHHHHHHHHHHHHH
Confidence 0122345677778899999988999999999997 888753 378855434 555669999999863
No 11
>cd04299 GT1_Glycogen_Phosphorylase_like This family is most closely related to the oligosaccharide phosphorylase domain family and other unidentified sequences. Oligosaccharide phosphorylase catalyzes the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The members of this family are found in bacteria and Archaea.
Probab=97.40 E-value=0.00097 Score=73.99 Aligned_cols=111 Identities=23% Similarity=0.304 Sum_probs=84.3
Q ss_pred EEEEecccc-----cccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCC-CCC------C--------C---C--C----
Q 015971 280 VILVAAECG-----PWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN-YAE------P--------Q---D--T---- 330 (397)
Q Consensus 280 ILfVASE~a-----PfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~-i~~------~--------~---d--~---- 330 (397)
|.|.|+|+. |. =.||||=.+|+--|+++.+|..+.-|-=+|+. +.. . . . +
T Consensus 88 ~aYFs~E~gl~~~lpi-YsGGLG~LAgd~lksasdLg~P~vgvGllY~~GyF~Q~i~~dG~Q~e~~~~~~~~~~p~~~~~ 166 (778)
T cd04299 88 AAYFSMEFGLHESLPI-YSGGLGILAGDHLKAASDLGLPLVGVGLLYRQGYFRQRLDADGWQQETYPVNDFEQLPLEPVR 166 (778)
T ss_pred eEEeccccccCCCCCc-cCchHHHHHHHHHHHHHhCCCCEEEEEeCcCCCCeEEEECCCCceeecCCCcCCCCCceEEEe
Confidence 349999965 54 57999999999999999999999999888872 111 0 0 0 0
Q ss_pred -----CeEEEEEeCCcceEEEEEEEEECCceEEEeeCcc----cccCCC--ccccCCCCCCccchH---HHHHhhhhccc
Q 015971 331 -----GIRKRYRVDRQDIEVAYFQAYIDGVDFVFLDSPL----FRHLGN--NIYGGGREVRNSFID---SPLFCLVEHIS 396 (397)
Q Consensus 331 -----~~~~~i~~~G~~~~v~V~~~~~~GV~vYFIDnp~----fF~R~g--~IYgg~y~D~~NaeR---FAfFSkAALE~ 396 (397)
.+...+.+.|....+++|+..+++|++||||++. +|+|.. .+||+ | +..| |+|||+|+++.
T Consensus 167 ~~~G~~~~v~v~l~g~~v~~rvw~~~vg~v~lylLDtd~~~n~~~~R~iT~~LYg~---D--~~~Rl~Qe~~Lg~agl~~ 241 (778)
T cd04299 167 DADGEPVRVSVELPGRTVYARVWKAQVGRVPLYLLDTDIPENSPDDRGITDRLYGG---D--QETRIQQEILLGIGGVRA 241 (778)
T ss_pred cCCCCeEEEEEeeCCCceEEEEEEEEcCCCCEEEecCCccccchhhcccccCCCCC---c--HHHHHHHHHHHHHHHHHH
Confidence 1123455788888899999998999999999997 477642 36874 5 6789 59999999863
No 12
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=96.36 E-value=0.008 Score=61.25 Aligned_cols=47 Identities=23% Similarity=0.333 Sum_probs=43.0
Q ss_pred CCCceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 275 ~n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
+++|||++++ |..||...||.+-.+..|.++|+++||+|.|+++..+
T Consensus 56 ~~~mrI~~~~-~~~~~~~~gG~~~~~~~l~~~L~~~G~eV~vlt~~~~ 102 (465)
T PLN02871 56 SRPRRIALFV-EPSPFSYVSGYKNRFQNFIRYLREMGDEVLVVTTDEG 102 (465)
T ss_pred CCCceEEEEE-CCcCCcccccHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 6679999986 8889999999999999999999999999999998654
No 13
>cd03802 GT1_AviGT4_like This family is most closely related to the GT1 family of glycosyltransferases. aviGT4 in Streptomyces viridochromogenes has been shown to be involved in biosynthesis of oligosaccharide antibiotic avilamycin A. Inactivation of aviGT4 resulted in a mutant that accumulated a novel avilamycin derivative lacking the terminal eurekanate residue.
Probab=96.13 E-value=0.0099 Score=55.32 Aligned_cols=46 Identities=35% Similarity=0.457 Sum_probs=42.1
Q ss_pred ceEEEEeccccc--ccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCC
Q 015971 278 MNVILVAAECGP--WSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (397)
Q Consensus 278 MkILfVASE~aP--fAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~ 323 (397)
|||++|+..+.| --..||..-++..|.++|.++||+|.|+.|....
T Consensus 1 MkI~~i~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~~ 48 (335)
T cd03802 1 MRIALVAPPREPVPPPAYGGTERVVAALTEGLVARGHEVTLFASGDSK 48 (335)
T ss_pred CeEEEEcCCcccCCCcccCcHHHHHHHHHHHHHhcCceEEEEecCCCC
Confidence 899999999876 5678999999999999999999999999988764
No 14
>PRK10307 putative glycosyl transferase; Provisional
Probab=95.77 E-value=0.013 Score=58.00 Aligned_cols=41 Identities=29% Similarity=0.554 Sum_probs=38.6
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~ 320 (397)
|||++|+..+.|- .||.+-.+..|.++|.++||+|.|++|.
T Consensus 1 mkIlii~~~~~P~--~~g~~~~~~~l~~~L~~~G~~V~vit~~ 41 (412)
T PRK10307 1 MKILVYGINYAPE--LTGIGKYTGEMAEWLAARGHEVRVITAP 41 (412)
T ss_pred CeEEEEecCCCCC--ccchhhhHHHHHHHHHHCCCeEEEEecC
Confidence 8999999999997 6999999999999999999999999964
No 15
>cd03805 GT1_ALG2_like This family is most closely related to the GT1 family of glycosyltransferases. ALG2, a 1,3-mannosyltransferase, in yeast catalyzes the mannosylation of Man(2)GlcNAc(2)-dolichol diphosphate and Man(1)GlcNAc(2)-dolichol diphosphate to form Man(3)GlcNAc(2)-dolichol diphosphate. A deficiency of this enzyme causes an abnormal accumulation of Man1GlcNAc2-PP-dolichol and Man2GlcNAc2-PP-dolichol, which is associated with a type of congenital disorders of glycosylation (CDG), designated CDG-Ii, in humans.
Probab=95.08 E-value=0.035 Score=53.56 Aligned_cols=41 Identities=24% Similarity=0.334 Sum_probs=36.6
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
||||||.+ ....||..=++..|.++|+++||+|.|+++.++
T Consensus 1 mkIl~~~~----~~~~gG~e~~~~~la~~L~~~G~~V~v~~~~~~ 41 (392)
T cd03805 1 LRVAFIHP----DLGIGGAERLVVDAALALQSRGHEVTIYTSHHD 41 (392)
T ss_pred CeEEEECC----CCCCchHHHHHHHHHHHHHhCCCeEEEEcCCCC
Confidence 89999964 445899999999999999999999999998765
No 16
>cd03794 GT1_wbuB_like This family is most closely related to the GT1 family of glycosyltransferases. wbuB in E. coli is involved in the biosynthesis of the O26 O-antigen. It has been proposed to function as an N-acetyl-L-fucosamine (L-FucNAc) transferase.
Probab=93.99 E-value=0.063 Score=49.19 Aligned_cols=44 Identities=23% Similarity=0.316 Sum_probs=39.4
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i 324 (397)
|||+|+.-+.|.. ||.+..+..|.++|+++||+|.|+.+.....
T Consensus 1 kIl~i~~~~~~~~--~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~~ 44 (394)
T cd03794 1 KILILSQYFPPEL--GGGAFRTTELAEELVKRGHEVTVITGSPNYP 44 (394)
T ss_pred CEEEEecccCCcc--CCcceeHHHHHHHHHhCCceEEEEecCCCcc
Confidence 6999999888876 9999999999999999999999999886543
No 17
>PLN02846 digalactosyldiacylglycerol synthase
Probab=93.99 E-value=0.068 Score=56.39 Aligned_cols=45 Identities=20% Similarity=0.313 Sum_probs=41.7
Q ss_pred CCceEEEEecccccccccccHhHHHhHHHHHHHHCC-CeEEEEeeCCC
Q 015971 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRG-HRVMVVAPHYG 322 (397)
Q Consensus 276 n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~G-hdVrVVmP~Y~ 322 (397)
+.|||++||-=+.|| ++|.+-.+.-+...|+++| |+|.||.|+|.
T Consensus 3 ~~mrIaivTdt~lP~--vnGva~s~~~~a~~L~~~G~heV~vvaP~~~ 48 (462)
T PLN02846 3 KKQHIAIFTTASLPW--MTGTAVNPLFRAAYLAKDGDREVTLVIPWLS 48 (462)
T ss_pred CCCEEEEEEcCCCCC--CCCeeccHHHHHHHHHhcCCcEEEEEecCCc
Confidence 459999999999999 6889999999999999999 89999999996
No 18
>cd03801 GT1_YqgM_like This family is most closely related to the GT1 family of glycosyltransferases and named after YqgM in Bacillus licheniformis about which little is known. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold.
Probab=93.71 E-value=0.12 Score=46.47 Aligned_cols=44 Identities=39% Similarity=0.586 Sum_probs=40.7
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i 324 (397)
||++++....|. .||.+.++..|.++|.+.||+|.++.+.....
T Consensus 1 kI~ii~~~~~~~--~~G~~~~~~~l~~~L~~~g~~v~i~~~~~~~~ 44 (374)
T cd03801 1 KILLVTPEYPPS--VGGAERHVLELARALAARGHEVTVLTPGDGGL 44 (374)
T ss_pred CeeEEecccCCc--cCcHhHHHHHHHHHHHhcCceEEEEecCCCCC
Confidence 699999999888 99999999999999999999999999987654
No 19
>PF13579 Glyco_trans_4_4: Glycosyl transferase 4-like domain; PDB: 3C4Q_B 3C4V_A 3C48_B 1Z2T_A.
Probab=93.36 E-value=0.098 Score=42.92 Aligned_cols=31 Identities=42% Similarity=0.626 Sum_probs=25.7
Q ss_pred ccHhHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 015971 294 GGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (397)
Q Consensus 294 GGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i 324 (397)
||.+-++..|.++|+++||+|.|+.|.+...
T Consensus 1 GG~~~~~~~l~~~L~~~G~~V~v~~~~~~~~ 31 (160)
T PF13579_consen 1 GGIERYVRELARALAARGHEVTVVTPQPDPE 31 (160)
T ss_dssp SHHHHHHHHHHHHHHHTT-EEEEEEE---GG
T ss_pred CCHHHHHHHHHHHHHHCCCEEEEEecCCCCc
Confidence 8999999999999999999999999998754
No 20
>cd03817 GT1_UGDG_like This family is most closely related to the GT1 family of glycosyltransferases. UDP-glucose-diacylglycerol glucosyltransferase (UGDG; also known as 1,2-diacylglycerol 3-glucosyltransferase) catalyzes the transfer of glucose from UDP-glucose to 1,2-diacylglycerol forming 3-D-glucosyl-1,2-diacylglycerol.
Probab=93.21 E-value=0.13 Score=47.26 Aligned_cols=45 Identities=29% Similarity=0.466 Sum_probs=40.2
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYA 325 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~ 325 (397)
|||+++..+.|. .||.+..+..|.++|+++||+|.|+.|.+....
T Consensus 1 kil~~~~~~~p~--~~G~~~~~~~l~~~L~~~g~~v~v~~~~~~~~~ 45 (374)
T cd03817 1 KIGIFTDTYLPQ--VNGVATSIRRLAEELEKRGHEVYVVAPSYPGAP 45 (374)
T ss_pred CeeEeehhccCC--CCCeehHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 689999988775 699999999999999999999999999887553
No 21
>cd03814 GT1_like_2 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=92.69 E-value=0.16 Score=46.94 Aligned_cols=43 Identities=28% Similarity=0.362 Sum_probs=39.1
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~ 323 (397)
||++|+....|.. ||.+..+..|.++|+++||+|.|+.+....
T Consensus 1 kIl~i~~~~~p~~--~G~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 43 (364)
T cd03814 1 RIAIVTDTFLPQV--NGVVRTLQRLVEHLRARGHEVLVIAPGPFR 43 (364)
T ss_pred CeEEEecccCccc--cceehHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 6999999998864 999999999999999999999999998653
No 22
>cd03821 GT1_Bme6_like This family is most closely related to the GT1 family of glycosyltransferases. Bme6 in Brucella melitensis has been shown to be involved in the biosynthesis of a polysaccharide.
Probab=92.27 E-value=0.18 Score=46.12 Aligned_cols=44 Identities=34% Similarity=0.413 Sum_probs=38.8
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i 324 (397)
|||+|++.+. -..||...++..|.++|+++||+|.|+.+.....
T Consensus 1 kIl~i~~~~~--~~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~ 44 (375)
T cd03821 1 KILHVIPSFD--PKYGGPVRVVLNLSKALAKLGHEVTVATTDAGGD 44 (375)
T ss_pred CeEEEcCCCC--cccCCeehHHHHHHHHHHhcCCcEEEEecCCCCc
Confidence 6899998876 4689999999999999999999999999887643
No 23
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=91.84 E-value=0.19 Score=47.83 Aligned_cols=39 Identities=46% Similarity=0.592 Sum_probs=34.5
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y 321 (397)
|||++++ .|. .||.+-++..|.++|+++||+|.|+....
T Consensus 1 mki~~~~---~p~--~gG~~~~~~~la~~L~~~G~~v~v~~~~~ 39 (371)
T cd04962 1 MKIGIVC---YPT--YGGSGVVATELGKALARRGHEVHFITSSR 39 (371)
T ss_pred CceeEEE---EeC--CCCccchHHHHHHHHHhcCCceEEEecCC
Confidence 8999997 353 59999999999999999999999998754
No 24
>cd03795 GT1_like_4 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP-linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=91.77 E-value=0.24 Score=46.24 Aligned_cols=42 Identities=31% Similarity=0.379 Sum_probs=38.5
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
|||+|+..+.|- .||.+.++..|.++|.++||+|.|+.+.-.
T Consensus 1 kil~i~~~~~p~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 42 (357)
T cd03795 1 RVLHVGKFYPPD--RGGIEQVIRDLAEGLAARGIEVAVLCASPE 42 (357)
T ss_pred CeeEecCCCCCC--CCcHHHHHHHHHHHHHhCCCceEEEecCCC
Confidence 699999988887 899999999999999999999999988654
No 25
>cd03809 GT1_mtfB_like This family is most closely related to the GT1 family of glycosyltransferases. mtfB (mannosyltransferase B) in E. coli has been shown to direct the growth of the O9-specific polysaccharide chain. It transfers two mannoses into the position 3 of the previously synthesized polysaccharide.
Probab=91.74 E-value=0.26 Score=45.71 Aligned_cols=46 Identities=15% Similarity=0.133 Sum_probs=41.0
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYA 325 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~ 325 (397)
||++++.-..|. +.||.+.++..|.++|++.||+|.++++......
T Consensus 1 ~ili~~~~~~~~-~~gG~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~ 46 (365)
T cd03809 1 RILIDARFLASR-RPTGIGRYARELLRALLKLDPEEVLLLLPGAPGL 46 (365)
T ss_pred CEEEechhhhcC-CCCcHHHHHHHHHHHHHhcCCceEEEEecCcccc
Confidence 688888888876 8899999999999999999999999999987543
No 26
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=91.70 E-value=0.36 Score=43.62 Aligned_cols=42 Identities=31% Similarity=0.583 Sum_probs=38.3
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~ 323 (397)
||++++.-..| .||..-++..|.++|++.||+|.|+.+....
T Consensus 1 kI~i~~~~~~~---~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~ 42 (348)
T cd03820 1 KILFVIPSLGN---AGGAERVLSNLANALAEKGHEVTIISLDKGE 42 (348)
T ss_pred CeEEEeccccC---CCChHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 68999987777 8999999999999999999999999998775
No 27
>cd03796 GT1_PIG-A_like This family is most closely related to the GT1 family of glycosyltransferases. Phosphatidylinositol glycan-class A (PIG-A), an X-linked gene in humans, is necessary for the synthesis of N-acetylglucosaminyl-phosphatidylinositol, a very early intermediate in glycosyl phosphatidylinositol (GPI)-anchor biosynthesis. The GPI-anchor is an important cellular structure that facilitates the attachment of many proteins to cell surfaces. Somatic mutations in PIG-A have been associated with Paroxysmal Nocturnal Hemoglobinuria (PNH), an acquired hematological disorder.
Probab=91.68 E-value=0.27 Score=48.76 Aligned_cols=42 Identities=31% Similarity=0.536 Sum_probs=38.6
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
||++|+.=+.|. .||..-.+..|.++|+++||+|.|++|.++
T Consensus 1 kI~~v~~~~~p~--~GG~e~~~~~la~~L~~~G~~V~v~~~~~~ 42 (398)
T cd03796 1 RICMVSDFFYPN--LGGVETHIYQLSQCLIKRGHKVVVITHAYG 42 (398)
T ss_pred CeeEEeeccccc--cccHHHHHHHHHHHHHHcCCeeEEEeccCC
Confidence 689998888885 699999999999999999999999999765
No 28
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=91.55 E-value=0.31 Score=44.74 Aligned_cols=45 Identities=36% Similarity=0.457 Sum_probs=39.3
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i 324 (397)
|||+++.-..|.. +||-.-++..|.++|+++||+|.|+.+.....
T Consensus 1 kIl~i~~~~~~~~-~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~~~ 45 (359)
T cd03823 1 RILVVNHLYPPRS-VGGAEVVAHDLAEALAKRGHEVAVLTAGEDPP 45 (359)
T ss_pred CeeEEcccCCccc-ccchHHHHHHHHHHHHhcCCceEEEeCCCCCC
Confidence 6899998877764 79999999999999999999999999876543
No 29
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=90.90 E-value=0.39 Score=45.03 Aligned_cols=43 Identities=21% Similarity=0.274 Sum_probs=37.0
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i 324 (397)
|||||++.- .-.||.+-++..|.++|.++||+|.|+.+....+
T Consensus 1 MkIl~~~~~----~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~ 43 (365)
T cd03825 1 MKVLHLNTS----DISGGAARAAYRLHRALQAAGVDSTMLVQEKKAL 43 (365)
T ss_pred CeEEEEecC----CCCCcHHHHHHHHHHHHHhcCCceeEEEeecchh
Confidence 899999763 3459999999999999999999999999876633
No 30
>PF13439 Glyco_transf_4: Glycosyltransferase Family 4; PDB: 2JJM_E 3MBO_C 2GEJ_A 2GEK_A.
Probab=90.81 E-value=0.35 Score=40.34 Aligned_cols=36 Identities=39% Similarity=0.545 Sum_probs=29.9
Q ss_pred ccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCC
Q 015971 290 WSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYA 325 (397)
Q Consensus 290 fAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~ 325 (397)
+...||.+=++..|.++|+++||+|.|+.|......
T Consensus 8 ~~~~GG~e~~~~~l~~~l~~~G~~v~v~~~~~~~~~ 43 (177)
T PF13439_consen 8 LPNIGGAERVVLNLARALAKRGHEVTVVSPGVKDPI 43 (177)
T ss_dssp TTSSSHHHHHHHHHHHHHHHTT-EEEEEESS-TTS-
T ss_pred CCCCChHHHHHHHHHHHHHHCCCEEEEEEcCCCccc
Confidence 345899999999999999999999999999987654
No 31
>cd04955 GT1_like_6 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=90.57 E-value=0.42 Score=44.93 Aligned_cols=43 Identities=26% Similarity=0.349 Sum_probs=37.3
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
||++|+++.+|- ..||...++..|.++|+++||+|.|+.+.-.
T Consensus 1 ~i~~i~~~~~~~-~~gG~~~~~~~la~~L~~~g~~v~v~~~~~~ 43 (363)
T cd04955 1 KIAIIGTRGIPA-KYGGFETFVEELAPRLVARGHEVTVYCRSPY 43 (363)
T ss_pred CeEEEecCcCCc-ccCcHHHHHHHHHHHHHhcCCCEEEEEccCC
Confidence 688888877654 4699999999999999999999999998654
No 32
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.
Probab=89.93 E-value=0.48 Score=43.21 Aligned_cols=39 Identities=23% Similarity=0.227 Sum_probs=35.6
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y 321 (397)
||++|+..+.+ ||.+.++..|.++|.+.|++|.++...-
T Consensus 1 ~i~~i~~~~~~----gG~~~~~~~l~~~l~~~~~~v~~~~~~~ 39 (365)
T cd03807 1 KVLHVITGLDV----GGAERMLVRLLKGLDRDRFEHVVISLTD 39 (365)
T ss_pred CeEEEEeeccC----ccHHHHHHHHHHHhhhccceEEEEecCc
Confidence 68999998877 9999999999999999999999998753
No 33
>cd03784 GT1_Gtf_like This family includes the Gtfs, a group of homologous glycosyltransferases involved in the final stages of the biosynthesis of antibiotics vancomycin and related chloroeremomycin. Gtfs transfer sugar moieties from an activated NDP-sugar donor to the oxidatively cross-linked heptapeptide core of vancomycin group antibiotics. The core structure is important for the bioactivity of the antibiotics.
Probab=88.92 E-value=0.51 Score=46.51 Aligned_cols=36 Identities=39% Similarity=0.537 Sum_probs=30.7
Q ss_pred ceEEEEecccccccccccHhHHHhH--HHHHHHHCCCeEEEEeeCC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGA--LPKALARRGHRVMVVAPHY 321 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgS--LPKALa~~GhdVrVVmP~Y 321 (397)
|||||++. |+.|+|.-. |.++|+++||+|+++++-+
T Consensus 1 mrIl~~~~--------p~~GHv~P~l~la~~L~~rGh~V~~~t~~~ 38 (401)
T cd03784 1 MRVLITTI--------GSRGDVQPLVALAWALRAAGHEVRVATPPE 38 (401)
T ss_pred CeEEEEeC--------CCcchHHHHHHHHHHHHHCCCeEEEeeCHh
Confidence 89999988 888998765 5567889999999999875
No 34
>TIGR02149 glgA_Coryne glycogen synthase, Corynebacterium family. This model describes Corynebacterium glutamicum GlgA and closely related proteins in several other species. This enzyme is required for glycogen biosynthesis and appears to replace the distantly related TIGR02095 family of ADP-glucose type glycogen synthase in Corynebacterium glutamicum, Mycobacterium tuberculosis, Bifidobacterium longum, and Streptomyces coelicolor.
Probab=88.90 E-value=0.54 Score=45.35 Aligned_cols=42 Identities=31% Similarity=0.278 Sum_probs=35.8
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y 321 (397)
|||++|+..+.|. +.||.+..+..|.++|+++ ++|.|++...
T Consensus 1 mkI~~i~~~~~p~-~~GG~~~~v~~l~~~l~~~-~~v~v~~~~~ 42 (388)
T TIGR02149 1 MKVTVLTREYPPN-VYGGAGVHVEELTRELARL-MDVDVRCFGD 42 (388)
T ss_pred CeeEEEecccCcc-ccccHhHHHHHHHHHHHHh-cCeeEEcCCC
Confidence 8999999988776 5699999999999999987 7777777543
No 35
>TIGR03449 mycothiol_MshA UDP-N-acetylglucosamine: 1L-myo-inositol-1-phosphate 1-alpha-D-N-acetylglucosaminyltransferase. Members of this protein family, found exclusively in the Actinobacteria, are MshA, the glycosyltransferase of mycothiol biosynthesis. Mycothiol replaces glutathione in these species.
Probab=88.84 E-value=0.43 Score=46.79 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=35.9
Q ss_pred EEEEeccccccc-----ccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 280 VILVAAECGPWS-----KTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 280 ILfVASE~aPfA-----KTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
|++|+-...|+. ..||..-.+..|.++|+++||+|.|+++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~GG~e~~v~~la~~L~~~G~~V~v~~~~~~ 48 (405)
T TIGR03449 1 VAMISMHTSPLQQPGTGDAGGMNVYILETATELARRGIEVDIFTRATR 48 (405)
T ss_pred CeEEeccCCccccCCCcCCCCceehHHHHHHHHhhCCCEEEEEecccC
Confidence 456666666654 5799999999999999999999999998754
No 36
>cd03811 GT1_WabH_like This family is most closely related to the GT1 family of glycosyltransferases. WabH in Klebsiella pneumoniae has been shown to transfer a GlcNAc residue from UDP-GlcNAc onto the acceptor GalUA residue in the cellular outer core.
Probab=88.55 E-value=0.7 Score=41.66 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=36.9
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i 324 (397)
|||+++.... .||..-++..|.++|++.||+|.|+.+.....
T Consensus 1 kIl~~~~~~~----~gG~~~~~~~l~~~l~~~g~~v~v~~~~~~~~ 42 (353)
T cd03811 1 KILFVIPSLG----GGGAERVLLNLANGLDKRGYDVTLVVLRDEGD 42 (353)
T ss_pred CeEEEeeccc----CCCcchhHHHHHHHHHhcCceEEEEEcCCCCc
Confidence 6888888665 79999999999999999999999999877644
No 37
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=87.46 E-value=0.7 Score=43.25 Aligned_cols=39 Identities=18% Similarity=0.328 Sum_probs=34.1
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y 321 (397)
|||++++.. +.||..-++..|.++|+++||+|.|+.+.-
T Consensus 1 ~il~~~~~~----~~gG~~~~~~~l~~~L~~~g~~v~v~~~~~ 39 (360)
T cd04951 1 KILYVITGL----GLGGAEKQVVDLADQFVAKGHQVAIISLTG 39 (360)
T ss_pred CeEEEecCC----CCCCHHHHHHHHHHhcccCCceEEEEEEeC
Confidence 588887764 689999999999999999999999998653
No 38
>cd01635 Glycosyltransferase_GTB_type Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. The structures of the formed glycoconjugates are extremely diverse, reflecting a wide range of biological functions. The members of this family share a common GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=87.25 E-value=0.76 Score=39.44 Aligned_cols=37 Identities=51% Similarity=0.640 Sum_probs=32.6
Q ss_pred EEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 280 VILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 280 ILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
|++++....| ..||.+-++..|.++|+++||+|.|+.
T Consensus 1 i~~i~~~~~~--~~~G~~~~~~~l~~~L~~~g~~v~v~~ 37 (229)
T cd01635 1 ILLVSTPLLP--GGGGVELVLLDLAKALARRGHEVEVVA 37 (229)
T ss_pred CeeeccccCC--CCCCchhHHHHHHHHHHHcCCeEEEEE
Confidence 4666766666 679999999999999999999999999
No 39
>PF03033 Glyco_transf_28: Glycosyltransferase family 28 N-terminal domain; InterPro: IPR004276 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. Glycosyltransferase family 28 GT28 from CAZY comprises enzymes with a number of known activities; 1,2-diacylglycerol 3-beta-galactosyltransferase (2.4.1.46 from EC); 1,2-diacylglycerol 3-beta-glucosyltransferase (2.4.1.157 from EC); beta-N-acetylglucosamine transferase (2.4.1 from EC).; GO: 0016758 transferase activity, transferring hexosyl groups, 0005975 carbohydrate metabolic process, 0030259 lipid glycosylation; PDB: 2IYF_B 2YJN_A 2P6P_A 1PNV_A 3H4T_A 3H4I_A 1PN3_B 3IA7_B 1NLM_B 1F0K_B ....
Probab=87.22 E-value=1.1 Score=37.60 Aligned_cols=29 Identities=45% Similarity=0.625 Sum_probs=22.5
Q ss_pred cccHhHHHh--HHHHHHHHCCCeEEEEeeCC
Q 015971 293 TGGLGDVAG--ALPKALARRGHRVMVVAPHY 321 (397)
Q Consensus 293 TGGLGDVvg--SLPKALa~~GhdVrVVmP~Y 321 (397)
.|.-|||-- +|.++|+++||+|++..|..
T Consensus 6 ~Gt~Ghv~P~lala~~L~~rGh~V~~~~~~~ 36 (139)
T PF03033_consen 6 GGTRGHVYPFLALARALRRRGHEVRLATPPD 36 (139)
T ss_dssp ESSHHHHHHHHHHHHHHHHTT-EEEEEETGG
T ss_pred cCChhHHHHHHHHHHHHhccCCeEEEeeccc
Confidence 388889864 56788999999999988753
No 40
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases. cap1E in Streptococcus pneumoniae is required for the synthesis of type 1 capsular polysaccharides.
Probab=86.66 E-value=0.98 Score=40.98 Aligned_cols=39 Identities=33% Similarity=0.382 Sum_probs=35.0
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~ 323 (397)
|||+|+.. .||..-.+..|.++|.++||+|.|+.+.-..
T Consensus 1 kIl~i~~~------~~g~~~~~~~l~~~L~~~g~~v~~~~~~~~~ 39 (359)
T cd03808 1 KILHIVTV------DGGLYSFRLPLIKALRAAGYEVHVVAPPGDE 39 (359)
T ss_pred CeeEEEec------chhHHHHHHHHHHHHHhcCCeeEEEecCCCc
Confidence 68999887 7999999999999999999999999987554
No 41
>cd03822 GT1_ecORF704_like This family is most closely related to the GT1 family of glycosyltransferases. ORF704 in E. coli has been shown to be involved in the biosynthesis of O-specific mannose homopolysaccharides.
Probab=86.37 E-value=1.1 Score=41.44 Aligned_cols=41 Identities=29% Similarity=0.386 Sum_probs=35.3
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
||+||+. ..|. .||...++..|.++|++.||+|.|+.....
T Consensus 1 kI~~v~~-~~~~--~gG~~~~~~~l~~~L~~~g~~v~v~~~~~~ 41 (366)
T cd03822 1 RIALVSP-YPPR--KCGIATFTTDLVNALSARGPDVLVVSVAAL 41 (366)
T ss_pred CeEEecC-CCCC--CCcHHHHHHHHHHHhhhcCCeEEEEEeecc
Confidence 6899976 3443 799999999999999999999999987655
No 42
>cd03800 GT1_Sucrose_synthase This family is most closely related to the GT1 family of glycosyltransferases. The sucrose-phosphate synthases in this family may be unique to plants and photosynthetic bacteria. This enzyme catalyzes the synthesis of sucrose 6-phosphate from fructose 6-phosphate and uridine 5'-diphosphate-glucose, a key regulatory step of sucrose metabolism. The activity of this enzyme is regulated by phosphorylation and moderated by the concentration of various metabolites and light.
Probab=86.18 E-value=0.88 Score=43.49 Aligned_cols=44 Identities=30% Similarity=0.446 Sum_probs=35.2
Q ss_pred eEEEEecccccccc-----cccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 279 NVILVAAECGPWSK-----TGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 279 kILfVASE~aPfAK-----TGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
||+|+.-=.+|+++ +||..-++..|.++|+++||+|.|+.+...
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~GG~~~~~~~l~~~L~~~g~~V~v~~~~~~ 49 (398)
T cd03800 1 RIALISLHGSPLAQPGGADTGGQNVYVLELARALARLGHEVDIFTRRID 49 (398)
T ss_pred CeEEEeccccccccCCCCCCCceeehHHHHHHHHhccCceEEEEEecCC
Confidence 46666655556554 569999999999999999999999987654
No 43
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase. RL J Bacteriol 1993 Mar;175(6):1841-3
Probab=82.90 E-value=2 Score=41.01 Aligned_cols=39 Identities=31% Similarity=0.367 Sum_probs=29.9
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
|||++++.|. ||--..+..|.++|.++||+|.|+.+.++
T Consensus 1 ~~i~~~~g~~------~g~~~~~~~La~~L~~~g~eV~vv~~~~~ 39 (348)
T TIGR01133 1 KKVVLAAGGT------GGHIFPALAVAEELIKRGVEVLWLGTKRG 39 (348)
T ss_pred CeEEEEeCcc------HHHHhHHHHHHHHHHhCCCEEEEEeCCCc
Confidence 7999998865 32222446899999999999999987554
No 44
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=82.85 E-value=1.9 Score=42.22 Aligned_cols=42 Identities=10% Similarity=0.222 Sum_probs=35.9
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHC--CCeEEEEeeCCC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARR--GHRVMVVAPHYG 322 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~--GhdVrVVmP~Y~ 322 (397)
|||+|++. ..| ..||..-++..|.++|.++ |++|.|+.|...
T Consensus 1 mkI~~~~~-~~~--~~GG~e~~~~~l~~~L~~~~~g~~v~v~~~~~~ 44 (359)
T PRK09922 1 MKIAFIGE-AVS--GFGGMETVISNVINTFEESKINCEMFFFCRNDK 44 (359)
T ss_pred CeeEEecc-ccc--CCCchhHHHHHHHHHhhhcCcceeEEEEecCCC
Confidence 89999974 333 4599999999999999999 899999998654
No 45
>cd03812 GT1_CapH_like This family is most closely related to the GT1 family of glycosyltransferases. capH in Staphylococcus aureus has been shown to be required for the biosynthesis of the type 1 capsular polysaccharide (CP1).
Probab=81.13 E-value=1.9 Score=40.50 Aligned_cols=41 Identities=10% Similarity=0.177 Sum_probs=36.6
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~ 323 (397)
|||+|+.-. ..||..-.+..|.++|++.|++|.|+++....
T Consensus 1 kIl~~~~~~----~~GG~~~~~~~l~~~L~~~~~~v~~i~~~~~~ 41 (358)
T cd03812 1 KILHIVGTM----NRGGIETFIMNYYRNLDRSKIQFDFLVTSKEE 41 (358)
T ss_pred CEEEEeCCC----CCccHHHHHHHHHHhcCccceEEEEEEeCCCC
Confidence 688888855 68999999999999999999999999998654
No 46
>TIGR02472 sucr_P_syn_N sucrose-phosphate synthase, putative, glycosyltransferase domain. This family consists of the N-terminal regions, or in some cases the entirety, of bacterial proteins closely related to plant sucrose-phosphate synthases (SPS). The C-terminal domain (TIGR02471), found with most members of this family, resembles both bona fide plant sucrose-phosphate phosphatases (SPP) and the SPP-like domain of plant SPS. At least two members of this family lack the SPP-like domain, which may have binding or regulatory rather than enzymatic activity by analogy to plant SPS. This enzyme produces sucrose 6-phosphate and UDP from UDP-glucose and D-fructose 6-phosphate, and may be encoded near the gene for fructokinase.
Probab=80.93 E-value=2.6 Score=42.90 Aligned_cols=33 Identities=33% Similarity=0.341 Sum_probs=29.4
Q ss_pred ccccccHhHHHhHHHHHHHHCCC--eEEEEeeCCC
Q 015971 290 WSKTGGLGDVAGALPKALARRGH--RVMVVAPHYG 322 (397)
Q Consensus 290 fAKTGGLGDVvgSLPKALa~~Gh--dVrVVmP~Y~ 322 (397)
+-.+||..-.+..|.++|+++|| +|.|+++.|.
T Consensus 22 ~p~~GG~~~~v~~La~~L~~~G~~~~V~v~t~~~~ 56 (439)
T TIGR02472 22 DADTGGQTKYVLELARALARRSEVEQVDLVTRLIK 56 (439)
T ss_pred CCCCCCcchHHHHHHHHHHhCCCCcEEEEEecccc
Confidence 45689999999999999999997 9999997664
No 47
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=78.17 E-value=3.4 Score=40.66 Aligned_cols=42 Identities=21% Similarity=0.404 Sum_probs=36.8
Q ss_pred CCceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 276 n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
+.||||++|+-+ -||-.=.+.+|..+|.++|++|.++.|.|.
T Consensus 3 ~~~rili~t~~~-----G~GH~~~a~al~~~l~~~g~~~~~~~d~~~ 44 (380)
T PRK13609 3 KNPKVLILTAHY-----GNGHVQVAKTLEQTFRQKGIKDVIVCDLFG 44 (380)
T ss_pred CCCeEEEEEcCC-----CchHHHHHHHHHHHHHhcCCCcEEEEEhHH
Confidence 458999999865 349999999999999999999888989885
No 48
>cd03792 GT1_Trehalose_phosphorylase Trehalose phosphorylase (TP) reversibly catalyzes trehalose synthesis and degradation from alpha-glucose-1-phosphate (alpha-Glc-1-P) and glucose. The catalyzing activity includes the phosphorolysis of trehalose, which produce alpha-Glc-1-P and glucose, and the subsequent synthesis of trehalose. This family is most closely related to the GT1 family of glycosyltransferases.
Probab=74.45 E-value=4.6 Score=39.41 Aligned_cols=39 Identities=15% Similarity=0.130 Sum_probs=33.7
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y 321 (397)
||+|++.=. ..||..-++..|-++|.+.||+|.+++|.=
T Consensus 1 ki~~~~~~~----~~GGv~~~~~~l~~~l~~~g~~v~~~~~~~ 39 (372)
T cd03792 1 KVLHVNSTP----YGGGVAEILHSLVPLMRDLGVDTRWEVIKG 39 (372)
T ss_pred CeEEEeCCC----CCCcHHHHHHHHHHHHHHcCCCceEEecCC
Confidence 588887643 579999999999999999999999999843
No 49
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like
Probab=72.70 E-value=5.5 Score=33.14 Aligned_cols=36 Identities=22% Similarity=0.434 Sum_probs=29.9
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~ 323 (397)
|||+|+....+| +..+.++|++.|++|.|+.+..+.
T Consensus 1 KIl~i~~~~~~~---------~~~~~~~L~~~g~~V~ii~~~~~~ 36 (139)
T PF13477_consen 1 KILLIGNTPSTF---------IYNLAKELKKRGYDVHIITPRNDY 36 (139)
T ss_pred CEEEEecCcHHH---------HHHHHHHHHHCCCEEEEEEcCCCc
Confidence 688888877554 568899999999999999996653
No 50
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional
Probab=72.42 E-value=5.9 Score=38.46 Aligned_cols=40 Identities=30% Similarity=0.418 Sum_probs=31.7
Q ss_pred CceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 277 ~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
+|||++++.+ +||---++-.|.++|.++||+|.|+.+.++
T Consensus 1 ~~~i~i~~~g------~gG~~~~~~~la~~L~~~g~ev~vv~~~~~ 40 (357)
T PRK00726 1 MKKILLAGGG------TGGHVFPALALAEELKKRGWEVLYLGTARG 40 (357)
T ss_pred CcEEEEEcCc------chHhhhHHHHHHHHHHhCCCEEEEEECCCc
Confidence 4899988764 354444677999999999999999998663
No 51
>cd03798 GT1_wlbH_like This family is most closely related to the GT1 family of glycosyltransferases. wlbH in Bordetella parapertussis has been shown to be required for the biosynthesis of a trisaccharide that, when attached to the B. pertussis lipopolysaccharide (LPS) core (band B), generates band A LPS.
Probab=71.96 E-value=5.7 Score=36.08 Aligned_cols=42 Identities=33% Similarity=0.479 Sum_probs=33.4
Q ss_pred EEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 280 VILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 280 ILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
||+++. .+|....||-+-++..|.++|++.||+|.|+.+.-.
T Consensus 1 iLii~~-~~p~~~~~g~~~~~~~~~~~l~~~g~~v~v~~~~~~ 42 (377)
T cd03798 1 ILVISS-LYPPPNNGGGGIFVKELARALAKRGVEVTVLAPGPW 42 (377)
T ss_pred CeEecc-CCCCCCCchHHHHHHHHHHHHHHCCCceEEEecCCC
Confidence 455555 344445699999999999999999999999998654
No 52
>PRK10125 putative glycosyl transferase; Provisional
Probab=71.38 E-value=6.7 Score=40.10 Aligned_cols=41 Identities=22% Similarity=0.168 Sum_probs=35.9
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
||||+|-. -...||-+=++-.|.+.|.++||+|.|+.=+-.
T Consensus 1 mkil~i~~----~l~~GGaeri~~~L~~~l~~~G~~~~i~~~~~~ 41 (405)
T PRK10125 1 MNILQFNV----RLAEGGAAGVALDLHQRALQQGLASHFVYGYGK 41 (405)
T ss_pred CeEEEEEe----eecCCchhHHHHHHHHHHHhcCCeEEEEEecCC
Confidence 89999886 457799999999999999999999999876533
No 53
>cd03799 GT1_amsK_like This is a family of GT1 glycosyltransferases found specifically in certain bacteria. amsK in Erwinia amylovora, has been reported to be involved in the biosynthesis of amylovoran, a exopolysaccharide acting as a virulence factor.
Probab=67.86 E-value=9.1 Score=35.77 Aligned_cols=40 Identities=15% Similarity=0.057 Sum_probs=32.2
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~ 323 (397)
|||||+.-.-|. -.-++..+-.+|.++||+|.|+.+....
T Consensus 1 ki~~~~~~~~~~-----~~~~~~~~~~~L~~~g~~v~v~~~~~~~ 40 (355)
T cd03799 1 KIAYLVKEFPRL-----SETFILREILALEAAGHEVEIFSLRPPE 40 (355)
T ss_pred CEEEECCCCCCc-----chHHHHHHHHHHHhCCCeEEEEEecCcc
Confidence 689998765333 4467889999999999999999988764
No 54
>cd03819 GT1_WavL_like This family is most closely related to the GT1 family of glycosyltransferases. WavL in Vibrio cholerae has been shown to be involved in the biosynthesis of the lipopolysaccharide core.
Probab=67.29 E-value=6.2 Score=37.08 Aligned_cols=33 Identities=33% Similarity=0.492 Sum_probs=28.6
Q ss_pred cccccccHhHHHhHHHHHHHHCCCeEEEEeeCC
Q 015971 289 PWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (397)
Q Consensus 289 PfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y 321 (397)
|-...||...++..|.++|+++||+|.|+.|.-
T Consensus 5 ~~~~~gG~e~~~~~l~~~L~~~g~~v~v~~~~~ 37 (355)
T cd03819 5 PALESGGVERGTLELARALVERGHRSLVASAGG 37 (355)
T ss_pred hhhccCcHHHHHHHHHHHHHHcCCEEEEEcCCC
Confidence 334559999999999999999999999998753
No 55
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=59.36 E-value=7.9 Score=41.23 Aligned_cols=39 Identities=28% Similarity=0.358 Sum_probs=29.6
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y 321 (397)
-|||.+.+= -.+----++..|.++|+++||+|+|+.|..
T Consensus 21 ~kIl~~~P~-----~~~SH~~~~~~l~~~La~rGH~VTvi~p~~ 59 (507)
T PHA03392 21 ARILAVFPT-----PAYSHHSVFKVYVEALAERGHNVTVIKPTL 59 (507)
T ss_pred ccEEEEcCC-----CCCcHHHHHHHHHHHHHHcCCeEEEEeccc
Confidence 467766431 123466789999999999999999999974
No 56
>PF02951 GSH-S_N: Prokaryotic glutathione synthetase, N-terminal domain; InterPro: IPR004215 Prokaryotic glutathione synthetase 6.3.2.3 from EC (glutathione synthase) catalyses the conversion of gamma-L-glutamyl-L-cysteine and glycine to orthophosphate and glutathione in the presence of ATP. This is the second step in glutathione biosynthesis. The enzyme is inhibited by 7,8-dihydrofolate, methotrexate and trimethoprim. This domain is the N terminus of the enzyme.; GO: 0004363 glutathione synthase activity, 0006750 glutathione biosynthetic process; PDB: 1GLV_A 1GSA_A 1GSH_A 2GLT_A.
Probab=58.93 E-value=15 Score=32.48 Aligned_cols=87 Identities=18% Similarity=0.127 Sum_probs=43.0
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCCCCCCCCeEEEEEeCCc-ceEEEEEE---EEEC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYAEPQDTGIRKRYRVDRQ-DIEVAYFQ---AYID 353 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~~~~d~~~~~~i~~~G~-~~~v~V~~---~~~~ 353 (397)
|||+||- -|+.+.--=.|=.-+|-.+.+++||+|.++.|.==.+.+..-......+.+.+. ...+.+-. ....
T Consensus 1 Mki~fvm---Dpi~~i~~~kDTT~alm~eAq~RGhev~~~~~~dL~~~~g~~~a~~~~v~~~~~~~~~~~~~~~~~~~L~ 77 (119)
T PF02951_consen 1 MKIAFVM---DPIESIKPYKDTTFALMLEAQRRGHEVFYYEPGDLSLRDGRVWARARPVEVKDDPKDWYKLGEEEEIPLD 77 (119)
T ss_dssp -EEEEEE---S-GGG--TTT-HHHHHHHHHHHTT-EEEEE-GGGEEEETTEEEEEEEEEEE-S-SS--EEEEEEEEEEGG
T ss_pred CeEEEEe---CCHHHCCCCCChHHHHHHHHHHCCCEEEEEEcCcEEEECCEEEEEEEEEEEecCCCCcEecCCcEEcccc
Confidence 7888875 466665556789999999999999999999997433322111111112233221 11122222 1235
Q ss_pred CceEEEeeCccccc
Q 015971 354 GVDFVFLDSPLFRH 367 (397)
Q Consensus 354 GV~vYFIDnp~fF~ 367 (397)
.++++|+..+-=|+
T Consensus 78 ~~DvvlmRkDPPfD 91 (119)
T PF02951_consen 78 DFDVVLMRKDPPFD 91 (119)
T ss_dssp GSSEEEEE--S---
T ss_pred cCCEEEEecCCCCC
Confidence 78999998665554
No 57
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=56.56 E-value=15 Score=34.23 Aligned_cols=28 Identities=29% Similarity=0.559 Sum_probs=24.1
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEEeeC
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVVAPH 320 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVVmP~ 320 (397)
.||.|-+-++|...|++.||+|.++-..
T Consensus 6 IGG~G~mG~ala~~L~~~G~~V~v~~r~ 33 (219)
T TIGR01915 6 LGGTGDQGKGLALRLAKAGNKIIIGSRD 33 (219)
T ss_pred EcCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 3778899999999999999999987553
No 58
>PF01975 SurE: Survival protein SurE; InterPro: IPR002828 This entry represents a SurE-like structural domain with a 3-layer alpha/bete/alpha topology that bears some topological similarity to the N-terminal domain of the glutaminase/asparaginase family. This domain is found in the stationary phase survival protein SurE, a metal ion-dependent phosphatase found in eubacteria, archaea and eukaryotes. In Escherichia coli, SurE also has activity as a nucleotidase and exopolyphosphatase, and may be involved in the stress response []. E. coli cells with mutations in the surE gene survive poorly in stationary phase []. The structure of SurE homologues have been determined from Thermotoga maritima [] and the archaea Pyrobaculum aerophilum []. The T. maritima SurE homologue has phosphatase activity that is inhibited by vanadate or tungstate, both of which bind adjacent to the divalent metal ion. This domain is found in acid phosphatases (3.1.3.2 from EC), 5'-nucleotidases (3.1.3.5 from EC), 3'-nucleotidases (3.1.3.6 from EC) and exopolyphosphatases (3.6.1.11 from EC).; GO: 0016787 hydrolase activity; PDB: 1L5X_B 2V4O_D 2V4N_A 2WQK_B 2E6G_G 2E69_D 2E6C_C 2E6B_D 2E6E_A 2E6H_A ....
Probab=55.75 E-value=36 Score=32.21 Aligned_cols=27 Identities=44% Similarity=0.502 Sum_probs=22.8
Q ss_pred HHhHHHHHHHHCCCeEEEEeeCCCCCC
Q 015971 299 VAGALPKALARRGHRVMVVAPHYGNYA 325 (397)
Q Consensus 299 VvgSLPKALa~~GhdVrVVmP~Y~~i~ 325 (397)
=..+|-++|++.||+|.|+.|...+-.
T Consensus 15 Gi~aL~~~L~~~g~~V~VvAP~~~~Sg 41 (196)
T PF01975_consen 15 GIRALAKALSALGHDVVVVAPDSEQSG 41 (196)
T ss_dssp HHHHHHHHHTTTSSEEEEEEESSSTTT
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCcC
Confidence 357888999888999999999998654
No 59
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=52.48 E-value=21 Score=33.54 Aligned_cols=32 Identities=31% Similarity=0.545 Sum_probs=27.1
Q ss_pred ccccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 290 WSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 290 fAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
.+-+|| |+|+....+.|.+.|++|+||-|.+.
T Consensus 13 vLVIGg-G~va~~ka~~Ll~~ga~V~VIs~~~~ 44 (202)
T PRK06718 13 VVIVGG-GKVAGRRAITLLKYGAHIVVISPELT 44 (202)
T ss_pred EEEECC-CHHHHHHHHHHHHCCCeEEEEcCCCC
Confidence 334466 99999999999999999999999763
No 60
>PHA03003 palmytilated EEV membrane glycoprotein; Provisional
Probab=52.21 E-value=23 Score=36.21 Aligned_cols=46 Identities=20% Similarity=0.214 Sum_probs=35.3
Q ss_pred ceEEEEecccccccccccHh----HHHhHHHHHHHHCCCeEEEEeeCCCC
Q 015971 278 MNVILVAAECGPWSKTGGLG----DVAGALPKALARRGHRVMVVAPHYGN 323 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLG----DVvgSLPKALa~~GhdVrVVmP~Y~~ 323 (397)
-.|.+.+.-..|..+-+..+ ++..+|-.|.+++|++|+|++|.++.
T Consensus 230 ~~I~I~t~yf~P~~~~d~~~~~~~~i~~AL~~AAa~RGV~VRILv~~~~~ 279 (369)
T PHA03003 230 KSIDLELLSLVPVIREDDKTTYWPDIYNALIRAAINRGVKVRLLVGSWKK 279 (369)
T ss_pred hEEEEEEeccccEEeeCCCCccHHHHHHHHHHHHHcCCCEEEEEEecCCc
Confidence 36888888888876656543 66777777767899999999998653
No 61
>TIGR02470 sucr_synth sucrose synthase. This model represents sucrose synthase, an enzyme that, despite its name, generally uses rather produces sucrose. Sucrose plus UDP (or ADP) becomes D-fructose plus UDP-glucose (or ADP-glucose), which is then available for cell wall (or starch) biosynthesis. The enzyme is homologous to sucrose phosphate synthase, which catalyzes the penultimate step in sucrose synthesis. Sucrose synthase is found, so far, exclusively in plants and cyanobacteria.
Probab=51.73 E-value=18 Score=41.10 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=35.0
Q ss_pred CceEEEEecccc----cc---cccccHhHHHhHHHHH--------HHHCCC----eEEEEeeCCC
Q 015971 277 VMNVILVAAECG----PW---SKTGGLGDVAGALPKA--------LARRGH----RVMVVAPHYG 322 (397)
Q Consensus 277 ~MkILfVASE~a----Pf---AKTGGLGDVvgSLPKA--------La~~Gh----dVrVVmP~Y~ 322 (397)
.|||+||+.+.+ |- .=|||..-.|..|.+| |+++|| +|.|++-+-.
T Consensus 255 ~~rIa~lS~Hg~~~~~~~lG~~DtGGq~vYV~elaraL~~~~~~~La~~G~~v~~~V~I~TR~~~ 319 (784)
T TIGR02470 255 VFNVVILSPHGYFGQENVLGLPDTGGQVVYILDQVRALENEMLQRIKLQGLEITPKILIVTRLIP 319 (784)
T ss_pred cceEEEEecccccCCccccCCCCCCCceeHHHHHHHHHHHHHHHHHHhcCCCccceEEEEecCCC
Confidence 389999999983 21 2379998778877777 579999 6678887654
No 62
>KOG2130 consensus Phosphatidylserine-specific receptor PtdSerR, contains JmjC domain [Chromatin structure and dynamics; Signal transduction mechanisms]
Probab=50.87 E-value=14 Score=38.44 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccCCCCCCccchhhhcCcCCC
Q 015971 98 KKVLAMQKQLLQQISERRKLVSSIKSDIANSEEDEVSYEERENSFSD 144 (397)
Q Consensus 98 kkvla~q~~llqqiaerrklvssi~~~~~~~~~~~~s~~~~~~s~~~ 144 (397)
-++||+|+.=|.+||+- +-..|.+.++|+.+..|.++
T Consensus 321 ~~~L~~~~pel~~l~~s----------~~~~e~~~~~~~sss~ssss 357 (407)
T KOG2130|consen 321 ARLLALQRPELADLADS----------THLEESTGLASDSSSDSSSS 357 (407)
T ss_pred HHHHhhcChhHHHHhhh----------hccccccCcccccccccccc
Confidence 36899999999999863 33446677776665554443
No 63
>COG1819 Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]
Probab=50.52 E-value=16 Score=37.82 Aligned_cols=37 Identities=35% Similarity=0.590 Sum_probs=29.3
Q ss_pred CceEEEEecccccccccccHhHHHhH--HHHHHHHCCCeEEEEeeCC
Q 015971 277 VMNVILVAAECGPWSKTGGLGDVAGA--LPKALARRGHRVMVVAPHY 321 (397)
Q Consensus 277 ~MkILfVASE~aPfAKTGGLGDVvgS--LPKALa~~GhdVrVVmP~Y 321 (397)
.|||+|++- |.+|+|... |.++|.++||+|..+.+..
T Consensus 1 ~mkil~~~~--------~~~Ghv~p~~aL~~eL~~~gheV~~~~~~~ 39 (406)
T COG1819 1 RMKILFVVC--------GAYGHVNPCLALGKELRRRGHEVVFASTGK 39 (406)
T ss_pred CceEEEEec--------cccccccchHHHHHHHHhcCCeEEEEeCHH
Confidence 489999877 778888765 4557999999999887654
No 64
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=50.36 E-value=15 Score=36.37 Aligned_cols=35 Identities=29% Similarity=0.529 Sum_probs=25.5
Q ss_pred eEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 279 NVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 279 kILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
|||||..-+ | |-+ ..|..+|+++||+|.|+++.=.
T Consensus 1 ~il~~~~~~-p----~~~----~~la~~L~~~G~~v~~~~~~~~ 35 (396)
T cd03818 1 RILFVHQNF-P----GQF----RHLAPALAAQGHEVVFLTEPNA 35 (396)
T ss_pred CEEEECCCC-c----hhH----HHHHHHHHHCCCEEEEEecCCC
Confidence 577776543 3 222 3488999999999999998765
No 65
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=48.96 E-value=24 Score=34.77 Aligned_cols=34 Identities=38% Similarity=0.663 Sum_probs=29.5
Q ss_pred ceEEEEecccccccccccHh--HHHhHHHHHHHHCCCeEEEE
Q 015971 278 MNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVV 317 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLG--DVvgSLPKALa~~GhdVrVV 317 (397)
|+|+.|.+ -.||.| -++.+|.-+|+++|..|.+|
T Consensus 1 M~~iai~s------~kGGvG~TTltAnLA~aL~~~G~~VlaI 36 (243)
T PF06564_consen 1 MKVIAIVS------PKGGVGKTTLTANLAWALARLGESVLAI 36 (243)
T ss_pred CcEEEEec------CCCCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 78888877 568888 58999999999999999887
No 66
>PF00201 UDPGT: UDP-glucoronosyl and UDP-glucosyl transferase; InterPro: IPR002213 UDP glycosyltransferases (UGT) are a superfamily of enzymes that catalyzes the addition of the glycosyl group from a UTP-sugar to a small hydrophobic molecule. This family currently consist of: Mammalian UDP-glucuronosyl transferases (2.4.1.17 from EC) (UDPGT) []. A large family of membrane-bound microsomal enzymes which catalyze the transfer of glucuronic acid to a wide variety of exogenous and endogenous lipophilic substrates. These enzymes are of major importance in the detoxification and subsequent elimination of xenobiotics such as drugs and carcinogens. A large number of putative UDPGT from Caenorhabditis elegans. Mammalian 2-hydroxyacylsphingosine 1-beta-galactosyltransferase [] (2.4.1.45 from EC) (also known as UDP-galactose-ceramide galactosyltransferase). This enzyme catalyzes the transfer of galactose to ceramide, a key enzymatic step in the biosynthesis of galactocerebrosides, which are abundant sphingolipids of the myelin membrane of the central nervous system and peripheral nervous system. Plants flavonol O(3)-glucosyltransferase (2.4.1.91 from EC). An enzyme [] that catalyzes the transfer of glucose from UDP-glucose to a flavanol. This reaction is essential and one of the last steps in anthocyanin pigment biosynthesis. Baculoviruses ecdysteroid UDP-glucosyltransferase (2.4.1 from EC) [] (egt). This enzyme catalyzes the transfer of glucose from UDP-glucose to ectysteroids which are insect molting hormones. The expression of egt in the insect host interferes with the normal insect development by blocking the molting process. Prokaryotic zeaxanthin glucosyltransferase (2.4.1 from EC) (gene crtX), an enzyme involved in carotenoid biosynthesis and that catalyses the glycosylation reaction which converts zeaxanthin to zeaxanthin-beta-diglucoside. Streptomyces macrolide glycosyltransferases (2.4.1 from EC) []. These enzymes specifically inactivates macrolide anitibiotics via 2'-O-glycosylation using UDP-glucose. These enzymes share a conserved domain of about 50 amino acid residues located in their C-terminal section.; GO: 0016758 transferase activity, transferring hexosyl groups, 0008152 metabolic process; PDB: 3HBJ_A 3HBF_A 2PQ6_A 3IA7_B 3RSC_A 3IAA_B 2IYA_A 2IYF_B 2O6L_A 2VCH_A ....
Probab=48.75 E-value=8.2 Score=39.65 Aligned_cols=28 Identities=32% Similarity=0.323 Sum_probs=22.4
Q ss_pred ccHhHHHhHHHHHHHHCCCeEEEEeeCC
Q 015971 294 GGLGDVAGALPKALARRGHRVMVVAPHY 321 (397)
Q Consensus 294 GGLGDVvgSLPKALa~~GhdVrVVmP~Y 321 (397)
+.--=+++.|.++|+++||+|+|++|..
T Consensus 10 ~SH~~~~~~l~~~L~~rGH~VTvl~~~~ 37 (500)
T PF00201_consen 10 YSHFIFMRPLAEELAERGHNVTVLTPSP 37 (500)
T ss_dssp --SHHHHHHHHHHHHHH-TTSEEEHHHH
T ss_pred cCHHHHHHHHHHHHHhcCCceEEEEeec
Confidence 3455678899999999999999999986
No 67
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=48.55 E-value=25 Score=34.54 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=26.1
Q ss_pred CCCceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeC
Q 015971 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (397)
Q Consensus 275 ~n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~ 320 (397)
++.|||++|.+ |+ +-+.|...|++.||+|.++...
T Consensus 3 ~~~m~I~IiG~--------Ga---iG~~lA~~L~~~g~~V~~~~r~ 37 (313)
T PRK06249 3 SETPRIGIIGT--------GA---IGGFYGAMLARAGFDVHFLLRS 37 (313)
T ss_pred CcCcEEEEECC--------CH---HHHHHHHHHHHCCCeEEEEEeC
Confidence 44589888754 54 4566677899999999999763
No 68
>TIGR02468 sucrsPsyn_pln sucrose phosphate synthase/possible sucrose phosphate phosphatase, plant. Members of this family are sucrose-phosphate synthases of plants. This enzyme is known to exist in multigene families in several species of both monocots and dicots. The N-terminal domain is the glucosyltransferase domain. Members of this family also have a variable linker region and a C-terminal domain that resembles sucrose phosphate phosphatase (SPP) (EC 3.1.3.24) (see TIGR01485), the next and final enzyme of sucrose biosynthesis. The SPP-like domain likely serves a binding and not a catalytic function, as the reported SPP is always encoded by a distinct protein.
Probab=47.10 E-value=31 Score=40.59 Aligned_cols=47 Identities=26% Similarity=0.307 Sum_probs=38.5
Q ss_pred CCceEEEEec---------ccccccccccHhHHHhHHHHHHHHCC--CeEEEEeeCCC
Q 015971 276 NVMNVILVAA---------ECGPWSKTGGLGDVAGALPKALARRG--HRVMVVAPHYG 322 (397)
Q Consensus 276 n~MkILfVAS---------E~aPfAKTGGLGDVvgSLPKALa~~G--hdVrVVmP~Y~ 322 (397)
+.|.|+||+- |+.-=+-|||..=.|..|.+||+++| |+|.|++-...
T Consensus 168 ~~~~I~liS~HG~~~~~~~elg~~~DtGGq~vYV~ELAraLa~~~gv~~Vdl~TR~~~ 225 (1050)
T TIGR02468 168 KKLYIVLISLHGLVRGENMELGRDSDTGGQVKYVVELARALGSMPGVYRVDLLTRQVS 225 (1050)
T ss_pred CceEEEEEccccCccccCcccCCCCCCCChHHHHHHHHHHHHhCCCCCEEEEEeCCcC
Confidence 3588999875 34334779999999999999999998 89999887654
No 69
>KOG1192 consensus UDP-glucuronosyl and UDP-glucosyl transferase [Carbohydrate transport and metabolism; Energy production and conversion]
Probab=45.60 E-value=32 Score=35.08 Aligned_cols=41 Identities=29% Similarity=0.389 Sum_probs=33.9
Q ss_pred CceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 015971 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (397)
Q Consensus 277 ~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i 324 (397)
..+||+..+ ..|---.+..|.+.|+++||+|++++|.+...
T Consensus 6 ~~~il~~~p-------~~sH~~~~~~la~~L~~~gh~vt~~~~~~~~~ 46 (496)
T KOG1192|consen 6 AHNILVPFP-------GQSHLNPMLQLAKRLAERGHNVTVVTPSFNAL 46 (496)
T ss_pred ceeEEEECC-------cccHHHHHHHHHHHHHHcCCceEEEEeechhc
Confidence 346666655 67888899999999999999999999998644
No 70
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=43.18 E-value=20 Score=34.12 Aligned_cols=31 Identities=23% Similarity=0.427 Sum_probs=26.9
Q ss_pred ccHhHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 015971 294 GGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (397)
Q Consensus 294 GGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i 324 (397)
-|+|.|-+.|.+.|.+.||+|.+|---....
T Consensus 6 iG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~ 36 (225)
T COG0569 6 IGAGRVGRSVARELSEEGHNVVLIDRDEERV 36 (225)
T ss_pred ECCcHHHHHHHHHHHhCCCceEEEEcCHHHH
Confidence 4799999999999999999999997665543
No 71
>TIGR01380 glut_syn glutathione synthetase, prokaryotic. This model was built using glutathione synthetases found in Gram-negative bacteria. This gene does not appear to be present in genomes of Gram-positive bacteria. Glutathione synthetase has an ATP-binding domain in the COOH terminus and catalyzes the second step in the glutathione biosynthesis pathway: ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione. Glutathione is a tripeptide that functions as a reductant in many cellular reactions.
Probab=42.36 E-value=29 Score=34.39 Aligned_cols=43 Identities=21% Similarity=0.223 Sum_probs=38.0
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~ 323 (397)
|||.|+- -|+....--.|-...|-.|.+++||+|.++-|..=.
T Consensus 1 m~~~~~~---~~~~~~~~~~~st~~L~~aa~~rG~~v~~~~~~~l~ 43 (312)
T TIGR01380 1 LKVAFQM---DPIESINIGKDTTFALMEEAQKRGHELFFYEPGDLS 43 (312)
T ss_pred CeEEEEe---CCHHHCCCCcChHHHHHHHHHHcCCEEEEEehhheE
Confidence 7888886 688888888999999999999999999999998643
No 72
>PF01972 SDH_sah: Serine dehydrogenase proteinase; InterPro: IPR002825 This family of archaebacterial proteins, formerly known as DUF114, has been found to be a serine dehydrogenase proteinase distantly related to ClpP proteinases that belong to the serine proteinase superfamily. The family belong to MEROPS peptidase family S49; they are mostly unassigned peptidases but include the archaean signal peptide peptidase 1 []. The family has a catalytic triad of Ser, Asp, His residues, which shows an altered residue ordering compared with the ClpP proteinases but similar to that of the carboxypeptidase clan []. ; GO: 0016021 integral to membrane
Probab=42.15 E-value=25 Score=35.64 Aligned_cols=31 Identities=39% Similarity=0.694 Sum_probs=29.0
Q ss_pred ccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 292 KTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 292 KTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
-.||+.|.+..+..+|.+.-..|+|++|.|.
T Consensus 99 TpGG~v~AA~~I~~~l~~~~~~v~v~VP~~A 129 (285)
T PF01972_consen 99 TPGGLVDAAEQIARALREHPAKVTVIVPHYA 129 (285)
T ss_pred CCCCcHHHHHHHHHHHHhCCCCEEEEECccc
Confidence 4499999999999999999999999999986
No 73
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis. It transfers N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the C4 hydroxyl of a lipid-linked N-acetylmuramoyl pentapeptide (NAM). The resulting disaccharide is then transported across the cell membrane, where it is polymerized into NAG-NAM cell-wall repeat structure. MurG belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains, each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility.
Probab=41.37 E-value=45 Score=31.91 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=23.2
Q ss_pred ccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 294 GGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 294 GGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
||-=-++-.|.++|.++||+|.|+.+.++
T Consensus 10 gG~~~~~~~la~~l~~~G~ev~v~~~~~~ 38 (350)
T cd03785 10 GGHIFPALALAEELRERGAEVLFLGTKRG 38 (350)
T ss_pred hhhhhHHHHHHHHHHhCCCEEEEEECCCc
Confidence 44444566899999999999999988765
No 74
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=39.24 E-value=42 Score=31.97 Aligned_cols=23 Identities=43% Similarity=0.678 Sum_probs=18.8
Q ss_pred hHHHhHHHHHHHHCCCeEEEEee
Q 015971 297 GDVAGALPKALARRGHRVMVVAP 319 (397)
Q Consensus 297 GDVvgSLPKALa~~GhdVrVVmP 319 (397)
|-+-+.+...|++.||+|.++..
T Consensus 9 G~~G~~~a~~L~~~g~~V~~~~r 31 (304)
T PRK06522 9 GAIGGLFGAALAQAGHDVTLVAR 31 (304)
T ss_pred CHHHHHHHHHHHhCCCeEEEEEC
Confidence 44457778889999999999986
No 75
>PRK07454 short chain dehydrogenase; Provisional
Probab=39.06 E-value=43 Score=30.43 Aligned_cols=33 Identities=30% Similarity=0.401 Sum_probs=26.0
Q ss_pred CceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 277 ~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
.||+++| |||-+.+-..|.+.|.++|++|.++.
T Consensus 5 ~~k~vlI---------tG~sg~iG~~la~~l~~~G~~V~~~~ 37 (241)
T PRK07454 5 SMPRALI---------TGASSGIGKATALAFAKAGWDLALVA 37 (241)
T ss_pred CCCEEEE---------eCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 3666666 46777777888999999999988875
No 76
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=38.22 E-value=52 Score=29.82 Aligned_cols=37 Identities=16% Similarity=0.311 Sum_probs=27.9
Q ss_pred CceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEE
Q 015971 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVV 317 (397)
Q Consensus 277 ~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVV 317 (397)
.|||+.|++--..- |=-.++..|..+|++.|.+|.+|
T Consensus 16 ~~kvI~v~s~kgG~----GKTt~a~~LA~~la~~G~rVllI 52 (204)
T TIGR01007 16 EIKVLLITSVKPGE----GKSTTSANIAVAFAQAGYKTLLI 52 (204)
T ss_pred CCcEEEEecCCCCC----CHHHHHHHHHHHHHhCCCeEEEE
Confidence 38999998722221 23358999999999999999886
No 77
>PRK06756 flavodoxin; Provisional
Probab=37.01 E-value=69 Score=27.80 Aligned_cols=37 Identities=11% Similarity=0.287 Sum_probs=30.4
Q ss_pred CceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 277 ~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
+|||+.|- ++.||-=..|+..+.+.|.+.|++|.++-
T Consensus 1 mmkv~IiY-----~S~tGnTe~vA~~ia~~l~~~g~~v~~~~ 37 (148)
T PRK06756 1 MSKLVMIF-----ASMSGNTEEMADHIAGVIRETENEIEVID 37 (148)
T ss_pred CceEEEEE-----ECCCchHHHHHHHHHHHHhhcCCeEEEee
Confidence 36776664 46799999999999999999999987653
No 78
>PF02441 Flavoprotein: Flavoprotein; InterPro: IPR003382 This entry contains a diverse range of flavoprotein enzymes, including epidermin biosynthesis protein, EpiD, which has been shown to be a flavoprotein that binds FMN []. This enzyme catalyzes the removal of two reducing equivalents from the cysteine residue of the C-terminal meso-lanthionine of epidermin to form a --C==C-- double bond. This family also includes the B chain of dipicolinate synthase a small polar molecule that accumulates to high concentrations in bacterial endospores, and is thought to play a role in spore heat resistance, or the maintenance of heat resistance []. Dipicolinate synthase catalyses the formation of dipicolinic acid from dihydroxydipicolinic acid. This family also includes phenylacrylic acid decarboxylase 4.1.1 from EC [].; GO: 0003824 catalytic activity; PDB: 3QJG_L 1G63_G 1G5Q_L 1P3Y_1 1QZU_A 1E20_A 1MVN_A 1MVL_A 3ZQU_A 2EJB_A ....
Probab=36.75 E-value=60 Score=27.91 Aligned_cols=35 Identities=29% Similarity=0.381 Sum_probs=22.1
Q ss_pred ceEEEEecccccccccccHhHH-HhHHHHHHHHCCCeEEEEeeC
Q 015971 278 MNVILVAAECGPWSKTGGLGDV-AGALPKALARRGHRVMVVAPH 320 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDV-vgSLPKALa~~GhdVrVVmP~ 320 (397)
|||+++.+ |+.+-. +..+-++|.+.|++|+|++=.
T Consensus 1 k~i~l~vt--------Gs~~~~~~~~~l~~L~~~g~~v~vv~S~ 36 (129)
T PF02441_consen 1 KRILLGVT--------GSIAAYKAPDLLRRLKRAGWEVRVVLSP 36 (129)
T ss_dssp -EEEEEE---------SSGGGGGHHHHHHHHHTTTSEEEEEESH
T ss_pred CEEEEEEE--------CHHHHHHHHHHHHHHhhCCCEEEEEECC
Confidence 56666554 433322 456677888999999988743
No 79
>PRK05246 glutathione synthetase; Provisional
Probab=36.59 E-value=41 Score=33.25 Aligned_cols=44 Identities=23% Similarity=0.237 Sum_probs=38.5
Q ss_pred CceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCC
Q 015971 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGN 323 (397)
Q Consensus 277 ~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~ 323 (397)
.|||+|+- -|+.+...-.|-...|.+|-+++||+|.++.|..=.
T Consensus 1 ~~~~~~~~---~~~~~~~~~~~st~~l~~aa~~~G~~v~~~~~~dl~ 44 (316)
T PRK05246 1 MMKVAFQM---DPIESINIKKDSTFAMMLEAQRRGHELFYYEPDDLS 44 (316)
T ss_pred CceEEEEe---CCHHHCCCCCChHHHHHHHHHHcCCEEEEEehhhcE
Confidence 38999886 788888888899999999999999999999998643
No 80
>PRK08655 prephenate dehydrogenase; Provisional
Probab=36.58 E-value=41 Score=35.27 Aligned_cols=28 Identities=25% Similarity=0.491 Sum_probs=23.7
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEEeeC
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVVAPH 320 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVVmP~ 320 (397)
.||+|-+-++|.++|.+.|++|.++-+.
T Consensus 6 IGG~G~mG~slA~~L~~~G~~V~v~~r~ 33 (437)
T PRK08655 6 IGGTGGLGKWFARFLKEKGFEVIVTGRD 33 (437)
T ss_pred EecCCHHHHHHHHHHHHCCCEEEEEECC
Confidence 3778888899999999999999888643
No 81
>cd00138 PLDc Phospholipase D. Active site motifs; The PLD superfamily includes enzymes involved in signal transduction, lipid biosynthesis, endonucleases and open reading frames in pathogenic viruses and bacteria. PLD hydrolyzes the terminal phosphodiester bond of phospholipids to phosphatidic acid and a hydrophilic constituent. Phosphatidic acid is a compound that is heavily involved in signal transduction. The common features of the family members are that they can bind to a phosphodiester moiety, and that most of these enzymes are active as bi-lobed monomers or dimers.
Probab=36.25 E-value=70 Score=27.85 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=33.4
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCCC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNYA 325 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i~ 325 (397)
-.|.+++....|.+ +..--++..+|-+|.+ +|.+|+|++.......
T Consensus 35 ~~I~i~~~~~~~~~-~~~~~~l~~~L~~a~~-rGv~V~il~~~~~~~~ 80 (176)
T cd00138 35 KSIYIASFYLSPLI-TEYGPVILDALLAAAR-RGVKVRILVDEWSNTD 80 (176)
T ss_pred eEEEEEEeEecccc-cccchHHHHHHHHHHH-CCCEEEEEEcccccCC
Confidence 36777777666654 3445677788877776 4999999999887543
No 82
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=34.75 E-value=38 Score=35.93 Aligned_cols=45 Identities=36% Similarity=0.575 Sum_probs=40.7
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i 324 (397)
++|+||+-=.+| .+||.---.+.|...|-++||.|.|++=.|++-
T Consensus 1 ~~i~mVsdff~P--~~ggveshiy~lSq~li~lghkVvvithayg~r 45 (426)
T KOG1111|consen 1 SRILMVSDFFYP--STGGVESHIYALSQCLIRLGHKVVVITHAYGNR 45 (426)
T ss_pred CcceeeCccccc--CCCChhhhHHHhhcchhhcCCeEEEEeccccCc
Confidence 578899887777 479999999999999999999999999999965
No 83
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=34.15 E-value=58 Score=29.34 Aligned_cols=27 Identities=33% Similarity=0.340 Sum_probs=22.5
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEEee
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVVAP 319 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVVmP 319 (397)
|||-|-+-.+|.++|+++|++|.++..
T Consensus 7 tGa~g~iG~~l~~~l~~~g~~v~~~~~ 33 (247)
T PRK09730 7 TGGSRGIGRATALLLAQEGYTVAVNYQ 33 (247)
T ss_pred eCCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 577778888899999999999987643
No 84
>PRK09134 short chain dehydrogenase; Provisional
Probab=33.57 E-value=83 Score=29.03 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=19.2
Q ss_pred ccHhHHHhHHHHHHHHCCCeEEEE
Q 015971 294 GGLGDVAGALPKALARRGHRVMVV 317 (397)
Q Consensus 294 GGLGDVvgSLPKALa~~GhdVrVV 317 (397)
||-+.+-..|.+.|++.|++|.++
T Consensus 16 Gas~giG~~la~~l~~~g~~v~~~ 39 (258)
T PRK09134 16 GAARRIGRAIALDLAAHGFDVAVH 39 (258)
T ss_pred CCCcHHHHHHHHHHHHCCCEEEEE
Confidence 555666678899999999988765
No 85
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=32.53 E-value=33 Score=35.04 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.9
Q ss_pred ccHhHHHhHHHHHHHHCCCeEEEEeeC
Q 015971 294 GGLGDVAGALPKALARRGHRVMVVAPH 320 (397)
Q Consensus 294 GGLGDVvgSLPKALa~~GhdVrVVmP~ 320 (397)
||+|-+-++|.++|++.||+|.++-+.
T Consensus 105 GG~GlmG~slA~~l~~~G~~V~~~d~~ 131 (374)
T PRK11199 105 GGKGQLGRLFAKMLTLSGYQVRILEQD 131 (374)
T ss_pred cCCChhhHHHHHHHHHCCCeEEEeCCC
Confidence 889999999999999999999998753
No 86
>PRK06753 hypothetical protein; Provisional
Probab=32.44 E-value=60 Score=31.82 Aligned_cols=30 Identities=30% Similarity=0.639 Sum_probs=21.9
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
|+|+.|. ||++-.+.++ +|+++|++|.|+=
T Consensus 1 ~~V~IvG---------gG~aGl~~A~--~L~~~g~~v~v~E 30 (373)
T PRK06753 1 MKIAIIG---------AGIGGLTAAA--LLQEQGHEVKVFE 30 (373)
T ss_pred CEEEEEC---------CCHHHHHHHH--HHHhCCCcEEEEe
Confidence 6777766 4666665555 8999999998874
No 87
>PRK13982 bifunctional SbtC-like/phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Provisional
Probab=31.65 E-value=1.6e+02 Score=31.84 Aligned_cols=36 Identities=31% Similarity=0.404 Sum_probs=26.8
Q ss_pred CceEEEEecccccccccccHhHH-HhHHHHHHHHCCCeEEEEeeC
Q 015971 277 VMNVILVAAECGPWSKTGGLGDV-AGALPKALARRGHRVMVVAPH 320 (397)
Q Consensus 277 ~MkILfVASE~aPfAKTGGLGDV-vgSLPKALa~~GhdVrVVmP~ 320 (397)
..||++..+ ||.|-+ +-.|-+.|.+.|++|+|||-.
T Consensus 70 ~k~IllgVt--------GsIAayka~~lvr~L~k~G~~V~VvmT~ 106 (475)
T PRK13982 70 SKRVTLIIG--------GGIAAYKALDLIRRLKERGAHVRCVLTK 106 (475)
T ss_pred CCEEEEEEc--------cHHHHHHHHHHHHHHHhCcCEEEEEECc
Confidence 367777654 777654 446777889999999999865
No 88
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=31.17 E-value=42 Score=31.39 Aligned_cols=32 Identities=28% Similarity=0.294 Sum_probs=26.9
Q ss_pred cccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 291 SKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 291 AKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
.-|||-|=+-..|...|.++||+|+++.....
T Consensus 4 LVtG~tGfiG~~l~~~L~~~g~~V~~~~r~~~ 35 (314)
T COG0451 4 LVTGGAGFIGSHLVERLLAAGHDVRGLDRLRD 35 (314)
T ss_pred EEEcCcccHHHHHHHHHHhCCCeEEEEeCCCc
Confidence 44677788889999999999999999986544
No 89
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=31.14 E-value=44 Score=30.96 Aligned_cols=29 Identities=34% Similarity=0.572 Sum_probs=25.9
Q ss_pred cccccHhHHHhHHHHHHHHCCCeEEEEee
Q 015971 291 SKTGGLGDVAGALPKALARRGHRVMVVAP 319 (397)
Q Consensus 291 AKTGGLGDVvgSLPKALa~~GhdVrVVmP 319 (397)
.-|||-|-+-..|.+.|.+.|++|+++.=
T Consensus 2 lVtGatG~iG~~l~~~L~~~g~~V~~~~r 30 (292)
T TIGR01777 2 LITGGTGFIGRALTQRLTKDGHEVTILTR 30 (292)
T ss_pred EEEcccchhhHHHHHHHHHcCCEEEEEeC
Confidence 35899999999999999999999998773
No 90
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional
Probab=31.14 E-value=79 Score=30.81 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=25.5
Q ss_pred ceEEEEecccccccccccHhHHHhHHHH--HHHHC--CCeEEEEeeC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPK--ALARR--GHRVMVVAPH 320 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPK--ALa~~--GhdVrVVmP~ 320 (397)
||||+| +++++||++-++|- +|++. +.++.+++-.
T Consensus 1 m~ILii--------~~~~iGD~v~~~p~~~~lk~~~P~a~I~~l~~~ 39 (322)
T PRK10964 1 MRVLIV--------KTSSMGDVLHTLPALTDAQQAIPGIQFDWVVEE 39 (322)
T ss_pred CeEEEE--------eccchHHHHhHHHHHHHHHHhCCCCEEEEEECH
Confidence 788876 45999999999884 56664 6677666643
No 91
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=30.51 E-value=41 Score=27.91 Aligned_cols=28 Identities=36% Similarity=0.635 Sum_probs=25.3
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEEeeCC
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVVAPHY 321 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVVmP~Y 321 (397)
+|| |+|+..-.+.|.+.|.+|+|+.|.-
T Consensus 13 vGg-G~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 13 VGG-GPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp EEE-SHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred ECC-CHHHHHHHHHHHhCCCEEEEECCch
Confidence 466 8999999999999999999999995
No 92
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=30.34 E-value=57 Score=31.03 Aligned_cols=27 Identities=37% Similarity=0.390 Sum_probs=24.0
Q ss_pred ccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 292 KTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 292 KTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
-|||-|-+-..|.+.|.++|++|+++.
T Consensus 9 VtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 9 VTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred EECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 378899999999999999999998765
No 93
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=30.24 E-value=1e+02 Score=26.50 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=28.5
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeCC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPHY 321 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y 321 (397)
|||+.|..-.-+= |=-.-++..+-+.|.+.|++|.+|=+.-
T Consensus 1 Mkilii~gS~r~~---~~t~~l~~~~~~~l~~~g~e~~~i~l~~ 41 (152)
T PF03358_consen 1 MKILIINGSPRKN---SNTRKLAEAVAEQLEEAGAEVEVIDLAD 41 (152)
T ss_dssp -EEEEEESSSSTT---SHHHHHHHHHHHHHHHTTEEEEEEECTT
T ss_pred CEEEEEECcCCCC---CHHHHHHHHHHHHHHHcCCEEEEEeccc
Confidence 8999988766544 4444455556777888899999996553
No 94
>PLN00198 anthocyanidin reductase; Provisional
Probab=30.08 E-value=1e+02 Score=29.92 Aligned_cols=27 Identities=33% Similarity=0.379 Sum_probs=22.8
Q ss_pred ccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 292 KTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 292 KTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
-|||-|=+-..|.++|.++|++|.++.
T Consensus 14 ItG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 14 VIGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred EECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 358888888999999999999997664
No 95
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=29.95 E-value=41 Score=33.47 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=22.5
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEE
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVV 317 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVV 317 (397)
.+|||.+-++|.++|++.|+.|.|+
T Consensus 8 IvG~GliG~s~a~~l~~~g~~v~i~ 32 (279)
T COG0287 8 IVGLGLMGGSLARALKEAGLVVRII 32 (279)
T ss_pred EECCchHHHHHHHHHHHcCCeEEEE
Confidence 4789999999999999999999664
No 96
>TIGR01426 MGT glycosyltransferase, MGT family. This model describes the MGT (macroside glycosyltransferase) subfamily of the UDP-glucuronosyltransferase family. Members include a number of glucosyl transferases for macrolide antibiotic inactivation, but also include transferases of glucose-related sugars for macrolide antibiotic production.
Probab=29.81 E-value=43 Score=33.31 Aligned_cols=28 Identities=29% Similarity=0.393 Sum_probs=21.8
Q ss_pred ccHhHHHh--HHHHHHHHCCCeEEEEeeCC
Q 015971 294 GGLGDVAG--ALPKALARRGHRVMVVAPHY 321 (397)
Q Consensus 294 GGLGDVvg--SLPKALa~~GhdVrVVmP~Y 321 (397)
|+.|||-- .|.++|+++||+|++++|-.
T Consensus 4 p~~Ghv~P~l~lA~~L~~~Gh~V~~~~~~~ 33 (392)
T TIGR01426 4 PAHGHVNPTLGVVEELVARGHRVTYATTEE 33 (392)
T ss_pred CccccccccHHHHHHHHhCCCeEEEEeCHH
Confidence 55666643 56788999999999999854
No 97
>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5.4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....
Probab=29.79 E-value=48 Score=29.65 Aligned_cols=28 Identities=43% Similarity=0.598 Sum_probs=21.4
Q ss_pred cCCCCCCchhhHHHHHHhhhhHHHHHHHHHHHHHhhhhh
Q 015971 79 EDESGNEPEDSLQATIEKSKKVLAMQKQLLQQISERRKL 117 (397)
Q Consensus 79 ~~~~~d~~ed~l~atiekskkvla~q~~llqqiaerrkl 117 (397)
...+.|..|+.++||. +||++|-+|-+|
T Consensus 8 ~tv~~n~~e~I~~at~-----------eLl~~i~~~N~l 35 (118)
T PF07736_consen 8 TTVEENTPEEILEATR-----------ELLEEILERNEL 35 (118)
T ss_dssp EE-SSSSHHHHHHHHH-----------HHHHHHHHHTT-
T ss_pred EecCCCCHHHHHHHHH-----------HHHHHHHHHcCC
Confidence 3346788999999985 699999999877
No 98
>COG2144 Selenophosphate synthetase-related proteins [General function prediction only]
Probab=29.72 E-value=32 Score=35.42 Aligned_cols=28 Identities=32% Similarity=0.321 Sum_probs=26.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhhhhhhhhcc
Q 015971 92 ATIEKSKKVLAMQKQLLQQISERRKLVSSIK 122 (397)
Q Consensus 92 atiekskkvla~q~~llqqiaerrklvssi~ 122 (397)
+|+.|+|+.+--|-++|+++|| ||++=|
T Consensus 186 ttt~ka~~~~~~~~e~l~e~a~---l~~AgK 213 (324)
T COG2144 186 TTTMKAKEKFRAQLELLREGAK---LVKAGK 213 (324)
T ss_pred ceeeccHHHHHHHHHHHHHHHH---HHhhcc
Confidence 4999999999999999999999 998776
No 99
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=29.50 E-value=48 Score=30.35 Aligned_cols=35 Identities=31% Similarity=0.346 Sum_probs=30.6
Q ss_pred ccccccHhHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 015971 290 WSKTGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (397)
Q Consensus 290 fAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i 324 (397)
++.|||=|-+-+.+-++|.++|++|+++.+.-...
T Consensus 3 ilV~GatG~~G~~~~~~L~~~~~~v~~~~r~~~~~ 37 (275)
T COG0702 3 ILVTGATGFVGGAVVRELLARGHEVRAAVRNPEAA 37 (275)
T ss_pred EEEEecccchHHHHHHHHHhCCCEEEEEEeCHHHH
Confidence 45788889999999999999999999999986544
No 100
>PF12076 Wax2_C: WAX2 C-terminal domain; InterPro: IPR021940 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 170 amino acids in length. This domain is found associated with PF04116 from PFAM. This domain has a conserved LEGW sequence motif. This region has similarity to short chain dehydrogenases [].
Probab=28.88 E-value=55 Score=30.86 Aligned_cols=25 Identities=44% Similarity=0.642 Sum_probs=23.4
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEE
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVV 317 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVV 317 (397)
+|.+-.|++++..+|.++|.+|.++
T Consensus 4 ~G~~sKvaraiA~~LC~rgv~V~m~ 28 (164)
T PF12076_consen 4 TGNTSKVARAIALALCRRGVQVVML 28 (164)
T ss_pred cccccHHHHHHHHHHHhcCCEEEEe
Confidence 6889999999999999999999888
No 101
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=28.78 E-value=85 Score=29.86 Aligned_cols=36 Identities=31% Similarity=0.575 Sum_probs=27.4
Q ss_pred ceEEEEecccccccccccHhHHHhHHH--HHHHHCCCeEEEEeeCCC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALP--KALARRGHRVMVVAPHYG 322 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLP--KALa~~GhdVrVVmP~Y~ 322 (397)
|||+|...= .|+|=++++++ ++| +||+|.+++....
T Consensus 1 MkIl~~v~~-------~G~GH~~R~~~la~~L--rg~~v~~~~~~~~ 38 (318)
T PF13528_consen 1 MKILFYVQG-------HGLGHASRCLALARAL--RGHEVTFITSGPA 38 (318)
T ss_pred CEEEEEeCC-------CCcCHHHHHHHHHHHH--ccCceEEEEcCCc
Confidence 899986642 28999988765 456 6999999997754
No 102
>PRK10037 cell division protein; Provisional
Probab=28.02 E-value=73 Score=30.14 Aligned_cols=34 Identities=29% Similarity=0.530 Sum_probs=27.1
Q ss_pred ceEEEEecccccccccccHh--HHHhHHHHHHHHCCCeEEEE
Q 015971 278 MNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVV 317 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLG--DVvgSLPKALa~~GhdVrVV 317 (397)
|+|+-|+..= ||.| -.+..|..+|+++|++|-||
T Consensus 1 ~~~iav~n~K------GGvGKTT~a~nLA~~La~~G~rVLlI 36 (250)
T PRK10037 1 MAILGLQGVR------GGVGTTSITAALAWSLQMLGENVLVI 36 (250)
T ss_pred CcEEEEecCC------CCccHHHHHHHHHHHHHhcCCcEEEE
Confidence 7787777743 5555 46788999999999999988
No 103
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=27.79 E-value=61 Score=28.93 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=22.1
Q ss_pred ccccHhHHHhHHHHHHHHCCCeEEEEee
Q 015971 292 KTGGLGDVAGALPKALARRGHRVMVVAP 319 (397)
Q Consensus 292 KTGGLGDVvgSLPKALa~~GhdVrVVmP 319 (397)
-|||-|.+-..|.+.|.++|++|.++..
T Consensus 11 ItGasg~iG~~l~~~l~~~g~~v~~~~~ 38 (249)
T PRK12825 11 VTGAARGLGRAIALRLARAGADVVVHYR 38 (249)
T ss_pred EeCCCchHHHHHHHHHHHCCCeEEEEeC
Confidence 3577777888899999999999866443
No 104
>CHL00175 minD septum-site determining protein; Validated
Probab=27.57 E-value=1e+02 Score=29.48 Aligned_cols=34 Identities=29% Similarity=0.594 Sum_probs=28.0
Q ss_pred ceEEEEecccccccccccHh--HHHhHHHHHHHHCCCeEEEE
Q 015971 278 MNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVV 317 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLG--DVvgSLPKALa~~GhdVrVV 317 (397)
++|+.|++ --||.| -++..|+.+|+++|.+|-+|
T Consensus 15 ~~vi~v~s------~KGGvGKTt~a~nLA~~La~~g~~vlli 50 (281)
T CHL00175 15 SRIIVITS------GKGGVGKTTTTANLGMSIARLGYRVALI 50 (281)
T ss_pred ceEEEEEc------CCCCCcHHHHHHHHHHHHHhCCCeEEEE
Confidence 68888887 346665 68899999999999998887
No 105
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=26.76 E-value=56 Score=31.42 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=23.4
Q ss_pred ccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 292 KTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 292 KTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
-|||-|-+-..|.++|.++|++|.++.
T Consensus 5 VtGatG~iG~~l~~~L~~~g~~V~~~~ 31 (338)
T PRK10675 5 VTGGSGYIGSHTCVQLLQNGHDVVILD 31 (338)
T ss_pred EECCCChHHHHHHHHHHHCCCeEEEEe
Confidence 358888888899999999999999874
No 106
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=26.76 E-value=95 Score=30.53 Aligned_cols=25 Identities=32% Similarity=0.538 Sum_probs=21.4
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
.||=+| ...|.+.|.+.||+|.+.+
T Consensus 6 lGGT~e-gr~la~~L~~~g~~v~~s~ 30 (256)
T TIGR00715 6 MGGTVD-SRAIAKGLIAQGIEILVTV 30 (256)
T ss_pred EechHH-HHHHHHHHHhCCCeEEEEE
Confidence 388889 9999999999999977654
No 107
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=26.60 E-value=61 Score=29.36 Aligned_cols=28 Identities=32% Similarity=0.324 Sum_probs=23.5
Q ss_pred ccccHhHHHhHHHHHHHHCCCeEEEEee
Q 015971 292 KTGGLGDVAGALPKALARRGHRVMVVAP 319 (397)
Q Consensus 292 KTGGLGDVvgSLPKALa~~GhdVrVVmP 319 (397)
-|||-|.+-..|.+.|.++|+.|.++.-
T Consensus 6 ItGa~g~lG~~l~~~l~~~g~~v~~~~r 33 (255)
T TIGR01963 6 VTGAASGIGLAIALALAAAGANVVVNDL 33 (255)
T ss_pred EcCCcchHHHHHHHHHHHCCCEEEEEeC
Confidence 3578888889999999999999888754
No 108
>PRK08305 spoVFB dipicolinate synthase subunit B; Reviewed
Probab=26.49 E-value=74 Score=30.42 Aligned_cols=30 Identities=17% Similarity=0.086 Sum_probs=24.7
Q ss_pred cccccHhHHH--hHHHHHHHHCCCeEEEEeeC
Q 015971 291 SKTGGLGDVA--GALPKALARRGHRVMVVAPH 320 (397)
Q Consensus 291 AKTGGLGDVv--gSLPKALa~~GhdVrVVmP~ 320 (397)
.-|||.|-+= -.|-+.|.+.|++|+|||=.
T Consensus 11 gVTGsiaa~k~a~~lir~L~k~G~~V~vv~T~ 42 (196)
T PRK08305 11 GLTGSHCTYDEVMPEIEKLVDEGAEVTPIVSY 42 (196)
T ss_pred EEcCHHHHHHHHHHHHHHHHhCcCEEEEEECH
Confidence 3459998885 68899999999999999844
No 109
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=26.10 E-value=68 Score=28.47 Aligned_cols=24 Identities=38% Similarity=0.666 Sum_probs=20.4
Q ss_pred cHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 295 GLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 295 GLGDVvgSLPKALa~~GhdVrVVm 318 (397)
|||.+-..+.+.|.+.|++|.+.=
T Consensus 8 GlG~mG~~~a~~L~~~g~~v~~~d 31 (163)
T PF03446_consen 8 GLGNMGSAMARNLAKAGYEVTVYD 31 (163)
T ss_dssp --SHHHHHHHHHHHHTTTEEEEEE
T ss_pred chHHHHHHHHHHHHhcCCeEEeec
Confidence 799999999999999999999854
No 110
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=25.85 E-value=91 Score=30.76 Aligned_cols=33 Identities=30% Similarity=0.429 Sum_probs=26.9
Q ss_pred CceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeC
Q 015971 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (397)
Q Consensus 277 ~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~ 320 (397)
.|||+++.+ |++|-+.++ .|++.|++|.++...
T Consensus 2 ~m~I~IiGa--------GaiG~~~a~---~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGA--------GSLGSLWAC---RLARAGLPVRLILRD 34 (305)
T ss_pred CceEEEECC--------CHHHHHHHH---HHHhCCCCeEEEEec
Confidence 488888876 888877655 488999999999885
No 111
>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional
Probab=25.83 E-value=78 Score=31.26 Aligned_cols=36 Identities=22% Similarity=0.435 Sum_probs=26.2
Q ss_pred ceEEEEecccccccccccHhHHHhHHH--HHHHHC--CCeEEEEeeCC
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALP--KALARR--GHRVMVVAPHY 321 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLP--KALa~~--GhdVrVVmP~Y 321 (397)
||||.| ++++||||+-++| ++|++. +.++.+++..+
T Consensus 1 mrILii--------~~~~iGD~il~tP~l~~Lk~~~P~a~I~~l~~~~ 40 (348)
T PRK10916 1 MKILVI--------GPSWVGDMMMSQSLYRTLKARYPQAIIDVMAPAW 40 (348)
T ss_pred CcEEEE--------ccCcccHHHhHHHHHHHHHHHCCCCeEEEEechh
Confidence 677776 6699999999988 566664 66776665443
No 112
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=25.06 E-value=1.4e+02 Score=30.11 Aligned_cols=33 Identities=18% Similarity=0.413 Sum_probs=28.0
Q ss_pred CCceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 276 n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
..|+||.. ||=|=+-..|.+.|.++||+|.++.
T Consensus 20 ~~~~IlVt----------GgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 20 EKLRICIT----------GAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCEEEEE----------CCccHHHHHHHHHHHhCCCEEEEEE
Confidence 45887643 8888999999999999999999875
No 113
>PRK07236 hypothetical protein; Provisional
Probab=24.97 E-value=1e+02 Score=30.66 Aligned_cols=33 Identities=27% Similarity=0.376 Sum_probs=24.2
Q ss_pred CCCceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 275 ANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 275 ~n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
+..++|+.|.+ |++=.+.++ +|++.|++|.|+=
T Consensus 4 ~~~~~ViIVGa---------G~aGl~~A~--~L~~~G~~v~v~E 36 (386)
T PRK07236 4 MSGPRAVVIGG---------SLGGLFAAL--LLRRAGWDVDVFE 36 (386)
T ss_pred CCCCeEEEECC---------CHHHHHHHH--HHHhCCCCEEEEe
Confidence 44578888874 565555544 8999999999886
No 114
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=24.95 E-value=62 Score=30.51 Aligned_cols=29 Identities=24% Similarity=0.377 Sum_probs=25.1
Q ss_pred ccccHhHHHhHHHHHHHHCCCeEEEEeeC
Q 015971 292 KTGGLGDVAGALPKALARRGHRVMVVAPH 320 (397)
Q Consensus 292 KTGGLGDVvgSLPKALa~~GhdVrVVmP~ 320 (397)
-|||-|-+-+.|.++|.++|++|+++.=.
T Consensus 4 VtGatG~iG~~vv~~L~~~g~~V~~~~R~ 32 (285)
T TIGR03649 4 LTGGTGKTASRIARLLQAASVPFLVASRS 32 (285)
T ss_pred EEcCCChHHHHHHHHHHhCCCcEEEEeCC
Confidence 46888888899999999999999998743
No 115
>PRK12829 short chain dehydrogenase; Provisional
Probab=24.89 E-value=62 Score=29.59 Aligned_cols=26 Identities=38% Similarity=0.598 Sum_probs=21.5
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
|||.|-+...|.+.|.++|++|.++.
T Consensus 17 tGa~g~iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 17 TGGASGIGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred eCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 37777777889999999999987665
No 116
>PRK08163 salicylate hydroxylase; Provisional
Probab=24.75 E-value=1.1e+02 Score=30.36 Aligned_cols=31 Identities=48% Similarity=0.820 Sum_probs=24.1
Q ss_pred CceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 277 VMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 277 ~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
+++|+.|. ||++-.+.++ +|++.|++|.|+=
T Consensus 4 ~~~V~IvG---------aGiaGl~~A~--~L~~~g~~v~v~E 34 (396)
T PRK08163 4 VTPVLIVG---------GGIGGLAAAL--ALARQGIKVKLLE 34 (396)
T ss_pred CCeEEEEC---------CcHHHHHHHH--HHHhCCCcEEEEe
Confidence 36788887 5777776665 8999999999884
No 117
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=24.74 E-value=77 Score=27.53 Aligned_cols=31 Identities=39% Similarity=0.461 Sum_probs=26.8
Q ss_pred ccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 292 KTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 292 KTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
-+||=|-+-..|.++|.++||+|+++.-.=.
T Consensus 3 V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 3 VFGATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp EETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 4688888999999999999999999996643
No 118
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=24.71 E-value=1e+02 Score=30.05 Aligned_cols=33 Identities=21% Similarity=0.338 Sum_probs=26.4
Q ss_pred cccccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 289 PWSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 289 PfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
+.+-+|| |+|+..=.+.|.+.|.+|+||.|...
T Consensus 27 ~VLVVGG-G~VA~RK~~~Ll~~gA~VtVVap~i~ 59 (223)
T PRK05562 27 KVLIIGG-GKAAFIKGKTFLKKGCYVYILSKKFS 59 (223)
T ss_pred EEEEECC-CHHHHHHHHHHHhCCCEEEEEcCCCC
Confidence 4444455 78888878899999999999999864
No 119
>PF01256 Carb_kinase: Carbohydrate kinase; InterPro: IPR000631 This family is related to Hydroxyethylthiazole kinase IPR000417 from INTERPRO and PfkB carbohydrate kinase IPR011611 from INTERPRO implying that it also a carbohydrate kinase. Several uncharacterised proteins have been shown to share regions of similarities, including yeast chromosome XI hypothetical protein YKL151c; Caenorhabditis elegans hypothetical protein R107.2; Escherichia coli hypothetical protein yjeF; Bacillus subtilis hypothetical protein yxkO; Helicobacter pylori hypothetical protein HP1363; Mycobacterium tuberculosis hypothetical protein MtCY77.05c; Mycobacterium leprae hypothetical protein B229_C2_201; Synechocystis sp. (strain PCC 6803) hypothetical protein sll1433; and Methanocaldococcus jannaschii (Methanococcus jannaschii) hypothetical protein MJ1586. These are proteins of about 30 to 40 kDa whose central region is well conserved.; PDB: 3RSG_A 3RT9_A 3RRF_A 3RTB_A 3RRE_A 3RS9_A 3RSS_A 3RRB_A 3RTA_A 3RTD_A ....
Probab=24.61 E-value=75 Score=30.85 Aligned_cols=32 Identities=31% Similarity=0.443 Sum_probs=24.9
Q ss_pred EEEecccccccccccHhHHHhHHHHHHHHCCC
Q 015971 281 ILVAAECGPWSKTGGLGDVAGALPKALARRGH 312 (397)
Q Consensus 281 LfVASE~aPfAKTGGLGDVvgSLPKALa~~Gh 312 (397)
+++...-.|+.-|||-|||..++=-+|..+|.
T Consensus 172 ~~~n~~gn~~la~gGsGDvLaGii~~llaq~~ 203 (242)
T PF01256_consen 172 VYVNPTGNPGLATGGSGDVLAGIIAGLLAQGY 203 (242)
T ss_dssp EEEE----GGGSSTTHHHHHHHHHHHHHHHTS
T ss_pred eeEeCCCCCCCCCCCcccHHHHHHHHHHHccC
Confidence 55566667999999999999999999999886
No 120
>PRK07538 hypothetical protein; Provisional
Probab=24.43 E-value=94 Score=31.34 Aligned_cols=30 Identities=40% Similarity=0.723 Sum_probs=22.2
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
|+|+.|. ||+|-.+.++ +|+++|++|.|+=
T Consensus 1 ~dV~IVG---------aG~aGl~~A~--~L~~~G~~v~v~E 30 (413)
T PRK07538 1 MKVLIAG---------GGIGGLTLAL--TLHQRGIEVVVFE 30 (413)
T ss_pred CeEEEEC---------CCHHHHHHHH--HHHhCCCcEEEEE
Confidence 5666665 5677766665 7999999998874
No 121
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=23.89 E-value=1e+02 Score=29.82 Aligned_cols=37 Identities=27% Similarity=0.214 Sum_probs=31.7
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
.|||||-.-. ..||..-++-.|.++|.+.|+++.|+.
T Consensus 2 ~~il~ii~~~----~~GG~e~~~~~l~~~l~~~~~~~~v~~ 38 (374)
T TIGR03088 2 PLIVHVVYRF----DVGGLENGLVNLINHLPADRYRHAVVA 38 (374)
T ss_pred ceEEEEeCCC----CCCcHHHHHHHHHhhccccccceEEEE
Confidence 4788887655 469999999999999999999988886
No 122
>PRK06194 hypothetical protein; Provisional
Probab=23.64 E-value=75 Score=29.74 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=21.6
Q ss_pred ccccHhHHHhHHHHHHHHCCCeEEEE
Q 015971 292 KTGGLGDVAGALPKALARRGHRVMVV 317 (397)
Q Consensus 292 KTGGLGDVvgSLPKALa~~GhdVrVV 317 (397)
-|||-+-+-..|.+.|+++|++|.++
T Consensus 11 VtGasggIG~~la~~l~~~G~~V~~~ 36 (287)
T PRK06194 11 ITGAASGFGLAFARIGAALGMKLVLA 36 (287)
T ss_pred EeCCccHHHHHHHHHHHHCCCEEEEE
Confidence 35777778888999999999998765
No 123
>PRK06138 short chain dehydrogenase; Provisional
Probab=23.57 E-value=73 Score=28.88 Aligned_cols=27 Identities=37% Similarity=0.473 Sum_probs=22.7
Q ss_pred ccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 292 KTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 292 KTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
-|||-+.+-..|.+.|+++|++|.++.
T Consensus 10 ItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 10 VTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred EeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 458888888999999999999986663
No 124
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=23.44 E-value=1.6e+02 Score=30.08 Aligned_cols=35 Identities=29% Similarity=0.568 Sum_probs=28.3
Q ss_pred CCceEEEEecccccccccccHh--HHHhHHHHHHHHCCCeEEEE
Q 015971 276 NVMNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVV 317 (397)
Q Consensus 276 n~MkILfVASE~aPfAKTGGLG--DVvgSLPKALa~~GhdVrVV 317 (397)
+..+|+.|+. | ||.| .++..|..+|+++|.+|-+|
T Consensus 29 ~~~~ii~v~g------k-gG~GKSt~a~nLa~~la~~g~rVlli 65 (329)
T cd02033 29 KKTQIIAIYG------K-GGIGKSFTLANLSYMMAQQGKRVLLI 65 (329)
T ss_pred CCCeEEEEEC------C-CCCCHHHHHHHHHHHHHHCCCcEEEE
Confidence 4567888762 3 7776 77899999999999999988
No 125
>PRK05693 short chain dehydrogenase; Provisional
Probab=23.39 E-value=1.1e+02 Score=28.64 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=18.9
Q ss_pred ccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 294 GGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 294 GGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
||-+-+-.+|.+.|+++|++|.++.
T Consensus 8 GasggiG~~la~~l~~~G~~V~~~~ 32 (274)
T PRK05693 8 GCSSGIGRALADAFKAAGYEVWATA 32 (274)
T ss_pred cCCChHHHHHHHHHHHCCCEEEEEe
Confidence 4444555677899999999988765
No 126
>PRK09271 flavodoxin; Provisional
Probab=23.36 E-value=1.6e+02 Score=26.25 Aligned_cols=35 Identities=31% Similarity=0.420 Sum_probs=28.9
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEE
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVV 317 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVV 317 (397)
|||+.|-. +.+|-=..++..|..+|.+.|++|.+.
T Consensus 1 mkv~IvY~-----S~tGnTe~~A~~ia~~l~~~g~~v~~~ 35 (160)
T PRK09271 1 MRILLAYA-----SLSGNTREVAREIEERCEEAGHEVDWV 35 (160)
T ss_pred CeEEEEEE-----cCCchHHHHHHHHHHHHHhCCCeeEEE
Confidence 67666553 678999999999999999999998754
No 127
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=23.29 E-value=67 Score=30.33 Aligned_cols=28 Identities=32% Similarity=0.405 Sum_probs=24.2
Q ss_pred cccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 291 SKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 291 AKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
.-|||-|-+-..|.++|.++|++|.++.
T Consensus 4 lItG~~G~iG~~l~~~L~~~g~~V~~~~ 31 (328)
T TIGR03466 4 LVTGATGFVGSAVVRLLLEQGEEVRVLV 31 (328)
T ss_pred EEECCccchhHHHHHHHHHCCCEEEEEE
Confidence 3468888888999999999999998875
No 128
>PRK09739 hypothetical protein; Provisional
Probab=23.25 E-value=1.4e+02 Score=27.32 Aligned_cols=40 Identities=33% Similarity=0.296 Sum_probs=26.8
Q ss_pred CCceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 276 n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
.+||||+|.+=-.+-..+ .-++..+-++|.+.|++|.++=
T Consensus 2 ~mmkiliI~~sp~~~s~s---~~l~~~~~~~~~~~g~~v~~~d 41 (199)
T PRK09739 2 QSMRIYLVWAHPRHDSLT---AKVAEAIHQRAQERGHQVEELD 41 (199)
T ss_pred CCceEEEEEcCCCCCCcH---HHHHHHHHHHHHHCCCEEEEEE
Confidence 369999998754442222 2344555677888999999873
No 129
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=23.14 E-value=63 Score=30.04 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=23.9
Q ss_pred CCCchhhHHHHHHhhhhHHHHHHHHHHHHHhhhh
Q 015971 83 GNEPEDSLQATIEKSKKVLAMQKQLLQQISERRK 116 (397)
Q Consensus 83 ~d~~ed~l~atiekskkvla~q~~llqqiaerrk 116 (397)
-||..|..- -.|+++++-|+-+-||+||.|=.
T Consensus 41 ldEEfD~~p--s~~~~~~lr~Rydrlr~va~rvQ 72 (156)
T PF08372_consen 41 LDEEFDTFP--SSRPPDSLRMRYDRLRSVAGRVQ 72 (156)
T ss_pred hhhhhcccc--cccccHHHHHHHHHHHHHHHHHH
Confidence 345555444 35788999999999999999844
No 130
>PLN02842 nucleotide kinase
Probab=23.09 E-value=1.2e+02 Score=33.04 Aligned_cols=47 Identities=26% Similarity=0.350 Sum_probs=42.6
Q ss_pred CCCCceEEEEeccccc---ccccccHhHHHhHHHHHHHHCCCeEEEEeeC
Q 015971 274 GANVMNVILVAAECGP---WSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (397)
Q Consensus 274 ~~n~MkILfVASE~aP---fAKTGGLGDVvgSLPKALa~~GhdVrVVmP~ 320 (397)
|.+-|+|-++-+|+.| .-..|+|=.++..+..+|++.|-+|+|+.|.
T Consensus 258 g~~r~~~~~~~pel~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~kv~~~~ 307 (505)
T PLN02842 258 GRTRLKVEINIPELNPEMDVYRIGTLMELVRVLALSFADDGKRVKVCVQG 307 (505)
T ss_pred CcceEEEEEecCccccccccccchhHHHHHHHHHHHHhhcCCceEEEecC
Confidence 4566899999999998 4678999999999999999999999999999
No 131
>PRK05868 hypothetical protein; Validated
Probab=23.04 E-value=1.1e+02 Score=30.69 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=18.0
Q ss_pred ccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 294 GGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 294 GGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
||++-.+.++ +|+++|++|.|+=
T Consensus 9 gG~aGl~~A~--~L~~~G~~v~viE 31 (372)
T PRK05868 9 ASVAGTAAAY--WLGRHGYSVTMVE 31 (372)
T ss_pred CCHHHHHHHH--HHHhCCCCEEEEc
Confidence 5777666655 7999999999985
No 132
>PRK08267 short chain dehydrogenase; Provisional
Probab=22.41 E-value=1.2e+02 Score=27.95 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=21.5
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
|||-+-+-.+|.+.|+++|++|.++-
T Consensus 7 tGasg~iG~~la~~l~~~G~~V~~~~ 32 (260)
T PRK08267 7 TGAASGIGRATALLFAAEGWRVGAYD 32 (260)
T ss_pred eCCCchHHHHHHHHHHHCCCeEEEEe
Confidence 46777777888999999999988874
No 133
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=22.33 E-value=1.5e+02 Score=29.93 Aligned_cols=32 Identities=9% Similarity=0.184 Sum_probs=26.4
Q ss_pred CCceEEEEecccccccccccHhHHHhHHHHHHHHCCC
Q 015971 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGH 312 (397)
Q Consensus 276 n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~Gh 312 (397)
.+||||++++.+ =||--=++.+|-.+|.++|.
T Consensus 4 ~~~~vlil~~~~-----G~GH~~aA~al~~~~~~~~~ 35 (391)
T PRK13608 4 QNKKILIITGSF-----GNGHMQVTQSIVNQLNDMNL 35 (391)
T ss_pred CCceEEEEECCC-----CchHHHHHHHHHHHHHhhCC
Confidence 458999999743 25899999999999998874
No 134
>PRK06101 short chain dehydrogenase; Provisional
Probab=22.33 E-value=79 Score=29.00 Aligned_cols=26 Identities=23% Similarity=0.429 Sum_probs=21.0
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
|||-+-+-.+|.+.|+++|++|.++-
T Consensus 7 tGas~giG~~la~~L~~~G~~V~~~~ 32 (240)
T PRK06101 7 TGATSGIGKQLALDYAKQGWQVIACG 32 (240)
T ss_pred EcCCcHHHHHHHHHHHhCCCEEEEEE
Confidence 46666666888999999999988764
No 135
>PLN02686 cinnamoyl-CoA reductase
Probab=22.33 E-value=86 Score=31.45 Aligned_cols=26 Identities=31% Similarity=0.410 Sum_probs=22.6
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
|||-|-+-..|.++|.++|++|+++.
T Consensus 59 TGatGfIG~~lv~~L~~~G~~V~~~~ 84 (367)
T PLN02686 59 TGGVSFLGLAIVDRLLRHGYSVRIAV 84 (367)
T ss_pred ECCchHHHHHHHHHHHHCCCEEEEEe
Confidence 57888888899999999999998764
No 136
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=22.19 E-value=51 Score=32.67 Aligned_cols=46 Identities=28% Similarity=0.393 Sum_probs=34.8
Q ss_pred CceEEEEeccccc---------ccccccHhHHHhHHHHHHHHCCCeEEEEeeCCC
Q 015971 277 VMNVILVAAECGP---------WSKTGGLGDVAGALPKALARRGHRVMVVAPHYG 322 (397)
Q Consensus 277 ~MkILfVASE~aP---------fAKTGGLGDVvgSLPKALa~~GhdVrVVmP~Y~ 322 (397)
+..|+-|++=+.- -+.-||+--...++.++|++++++|-+|+|.|=
T Consensus 143 ~~sIiNvsSIVGkiGN~GQtnYAAsK~GvIgftktaArEla~knIrvN~VlPGFI 197 (256)
T KOG1200|consen 143 GLSIINVSSIVGKIGNFGQTNYAASKGGVIGFTKTAARELARKNIRVNVVLPGFI 197 (256)
T ss_pred CceEEeehhhhcccccccchhhhhhcCceeeeeHHHHHHHhhcCceEeEeccccc
Confidence 3567777764331 123467777889999999999999999999984
No 137
>PHA02820 phospholipase-D-like protein; Provisional
Probab=21.91 E-value=1e+02 Score=32.46 Aligned_cols=46 Identities=13% Similarity=-0.013 Sum_probs=33.7
Q ss_pred eEEEEecccccccc-----cccHhHHHhHHHHHHHHCCCeEEEEeeCCCCC
Q 015971 279 NVILVAAECGPWSK-----TGGLGDVAGALPKALARRGHRVMVVAPHYGNY 324 (397)
Q Consensus 279 kILfVASE~aPfAK-----TGGLGDVvgSLPKALa~~GhdVrVVmP~Y~~i 324 (397)
.|.+.++=..|-.. +.==-++..+|-+|-+.+|++|++++|.....
T Consensus 233 ~I~I~tpyfvP~~~~~~~~~~yw~~i~~AL~~AA~~RGV~VriLvp~~~d~ 283 (424)
T PHA02820 233 FVYVSVMNFIPIIYSKAGKILFWPYIEDELRRAAIDRKVSVKLLISCWQRS 283 (424)
T ss_pred EEEEEEccccceeeccCCcccchHHHHHHHHHHHHhCCCEEEEEEeccCCC
Confidence 57788887888622 11114688888887788999999999986543
No 138
>PLN02253 xanthoxin dehydrogenase
Probab=21.89 E-value=81 Score=29.50 Aligned_cols=26 Identities=23% Similarity=0.534 Sum_probs=21.3
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
|||-+.+-.+|.+.|+++|++|.++-
T Consensus 24 tGas~gIG~~la~~l~~~G~~v~~~~ 49 (280)
T PLN02253 24 TGGATGIGESIVRLFHKHGAKVCIVD 49 (280)
T ss_pred ECCCchHHHHHHHHHHHcCCEEEEEe
Confidence 46667777889999999999988763
No 139
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=21.89 E-value=1.9e+02 Score=26.88 Aligned_cols=25 Identities=20% Similarity=0.303 Sum_probs=19.8
Q ss_pred ccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 294 GGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 294 GGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
|+=|.+-..|.++|.+.||+|+++.
T Consensus 24 GasG~iG~~l~~~L~~~g~~V~~~~ 48 (251)
T PLN00141 24 GATGRTGKRIVEQLLAKGFAVKAGV 48 (251)
T ss_pred CCCcHHHHHHHHHHHhCCCEEEEEe
Confidence 5555666788999999999998765
No 140
>PRK07774 short chain dehydrogenase; Provisional
Probab=21.87 E-value=84 Score=28.53 Aligned_cols=28 Identities=39% Similarity=0.546 Sum_probs=23.3
Q ss_pred cccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 291 SKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 291 AKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
+-|||-|.+-..|.++|.++|++|.++-
T Consensus 10 lItGasg~iG~~la~~l~~~g~~vi~~~ 37 (250)
T PRK07774 10 IVTGAAGGIGQAYAEALAREGASVVVAD 37 (250)
T ss_pred EEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 3458888888999999999999987764
No 141
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=21.76 E-value=94 Score=29.22 Aligned_cols=24 Identities=42% Similarity=0.578 Sum_probs=18.5
Q ss_pred ccHhHHHhHHHHHHHHCCCeEEEEee
Q 015971 294 GGLGDVAGALPKALARRGHRVMVVAP 319 (397)
Q Consensus 294 GGLGDVvgSLPKALa~~GhdVrVVmP 319 (397)
||+|=.+.++ +|+++|++|.||=-
T Consensus 9 aG~aGl~~A~--~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 9 AGPAGLAAAL--ALARAGIDVTIIER 32 (356)
T ss_dssp -SHHHHHHHH--HHHHTTCEEEEEES
T ss_pred CCHHHHHHHH--HHHhcccccccchh
Confidence 5777776666 99999999998854
No 142
>PRK08017 oxidoreductase; Provisional
Probab=21.69 E-value=84 Score=28.64 Aligned_cols=28 Identities=29% Similarity=0.317 Sum_probs=23.0
Q ss_pred cccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 291 SKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 291 AKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
+-|||-|.+-.+|.+.|+++|++|.++.
T Consensus 6 lVtGasg~IG~~la~~l~~~g~~v~~~~ 33 (256)
T PRK08017 6 LITGCSSGIGLEAALELKRRGYRVLAAC 33 (256)
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 3468888888999999999999986653
No 143
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=21.68 E-value=1.2e+02 Score=30.39 Aligned_cols=34 Identities=47% Similarity=0.837 Sum_probs=25.6
Q ss_pred ceEEEEecccccccccccHh--HHHhHHHHHHHHCCCeEEEEe
Q 015971 278 MNVILVAAECGPWSKTGGLG--DVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLG--DVvgSLPKALa~~GhdVrVVm 318 (397)
|||+|++. -||.| -++.++.-+++++|++|-|+.
T Consensus 1 ~r~~~~~G-------KGGVGKTT~aaA~A~~~A~~G~rtLlvS 36 (305)
T PF02374_consen 1 MRILFFGG-------KGGVGKTTVAAALALALARRGKRTLLVS 36 (305)
T ss_dssp -SEEEEEE-------STTSSHHHHHHHHHHHHHHTTS-EEEEE
T ss_pred CeEEEEec-------CCCCCcHHHHHHHHHHHhhCCCCeeEee
Confidence 77877765 47777 577778889999999999984
No 144
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=21.48 E-value=91 Score=29.91 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=23.0
Q ss_pred ccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 292 KTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 292 KTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
-|||-|-+-..|.+.|.+.|++|.++.
T Consensus 10 VtG~~G~IG~~l~~~L~~~G~~V~~~~ 36 (325)
T PLN02989 10 VTGASGYIASWIVKLLLFRGYTINATV 36 (325)
T ss_pred EECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 468888888999999999999997753
No 145
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=21.30 E-value=86 Score=28.47 Aligned_cols=28 Identities=25% Similarity=0.401 Sum_probs=23.2
Q ss_pred cccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 291 SKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 291 AKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
+-|||-+.+-..|.+.|.++|++|.++.
T Consensus 8 lItG~sg~iG~~la~~l~~~g~~v~~~~ 35 (258)
T PRK12429 8 LVTGAASGIGLEIALALAKEGAKVVIAD 35 (258)
T ss_pred EEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 3467778888999999999999987764
No 146
>CHL00194 ycf39 Ycf39; Provisional
Probab=21.20 E-value=89 Score=30.30 Aligned_cols=26 Identities=15% Similarity=0.304 Sum_probs=23.7
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
|||=|-+-+.|.++|.++||+|+++.
T Consensus 6 tGatG~iG~~lv~~Ll~~g~~V~~l~ 31 (317)
T CHL00194 6 IGATGTLGRQIVRQALDEGYQVRCLV 31 (317)
T ss_pred ECCCcHHHHHHHHHHHHCCCeEEEEE
Confidence 68888888999999999999999986
No 147
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=21.14 E-value=88 Score=28.21 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=21.5
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
|||-+.+-.++.+.|+++|++|.++-
T Consensus 11 tGas~~iG~~ia~~l~~~G~~v~~~~ 36 (235)
T PRK06550 11 TGAASGIGLAQARAFLAQGAQVYGVD 36 (235)
T ss_pred cCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 47777778888999999999987764
No 148
>PLN02712 arogenate dehydrogenase
Probab=20.98 E-value=3.1e+02 Score=30.75 Aligned_cols=34 Identities=24% Similarity=0.526 Sum_probs=28.0
Q ss_pred CCceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeC
Q 015971 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (397)
Q Consensus 276 n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~ 320 (397)
+.|+|.+| |+|-+.++|.++|.+.|++|.++-+.
T Consensus 51 ~~~kIgII-----------G~G~mG~slA~~L~~~G~~V~~~dr~ 84 (667)
T PLN02712 51 TQLKIAII-----------GFGNYGQFLAKTLISQGHTVLAHSRS 84 (667)
T ss_pred CCCEEEEE-----------ccCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45899887 47788889999999999999887653
No 149
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.96 E-value=87 Score=28.29 Aligned_cols=27 Identities=26% Similarity=0.465 Sum_probs=21.3
Q ss_pred ccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 292 KTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 292 KTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
-|||-|-+-.+|.+.|.++|++|.++.
T Consensus 10 ItGasg~iG~~l~~~l~~~G~~V~~~~ 36 (251)
T PRK07231 10 VTGASSGIGEGIARRFAAEGARVVVTD 36 (251)
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 346666667889999999999987764
No 150
>PRK06914 short chain dehydrogenase; Provisional
Probab=20.90 E-value=88 Score=29.18 Aligned_cols=27 Identities=22% Similarity=0.215 Sum_probs=22.3
Q ss_pred ccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 292 KTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 292 KTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
-|||-|.+-.+|.+.|+++|++|.++.
T Consensus 8 ItGasg~iG~~la~~l~~~G~~V~~~~ 34 (280)
T PRK06914 8 VTGASSGFGLLTTLELAKKGYLVIATM 34 (280)
T ss_pred EECCCchHHHHHHHHHHhCCCEEEEEe
Confidence 357777778888999999999998774
No 151
>PRK06180 short chain dehydrogenase; Provisional
Probab=20.90 E-value=86 Score=29.50 Aligned_cols=26 Identities=35% Similarity=0.385 Sum_probs=21.3
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
|||-|-+-.+|.+.|+++|++|.++.
T Consensus 10 tGasggiG~~la~~l~~~G~~V~~~~ 35 (277)
T PRK06180 10 TGVSSGFGRALAQAALAAGHRVVGTV 35 (277)
T ss_pred ecCCChHHHHHHHHHHhCcCEEEEEe
Confidence 46666777788999999999998875
No 152
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=20.88 E-value=1.2e+02 Score=29.79 Aligned_cols=24 Identities=42% Similarity=0.811 Sum_probs=20.5
Q ss_pred ccHh--HHHhHHHHHHHHCCCeEEEE
Q 015971 294 GGLG--DVAGALPKALARRGHRVMVV 317 (397)
Q Consensus 294 GGLG--DVvgSLPKALa~~GhdVrVV 317 (397)
||.| -.+-.|..+|+++|.+|-||
T Consensus 9 GGVGKTTta~nLA~~La~~G~rVLlI 34 (290)
T CHL00072 9 GGIGKSTTSCNISIALARRGKKVLQI 34 (290)
T ss_pred CCCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 7776 56788999999999998877
No 153
>PRK06849 hypothetical protein; Provisional
Probab=20.82 E-value=1.3e+02 Score=30.25 Aligned_cols=35 Identities=20% Similarity=0.318 Sum_probs=26.0
Q ss_pred CCceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEeeC
Q 015971 276 NVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVAPH 320 (397)
Q Consensus 276 n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVmP~ 320 (397)
++|+||...+. +-++-.+.++|.+.|++|.++-..
T Consensus 3 ~~~~VLI~G~~----------~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 3 TKKTVLITGAR----------APAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred CCCEEEEeCCC----------cHHHHHHHHHHHHCCCEEEEEeCC
Confidence 45788876543 226778889999999999988543
No 154
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=20.81 E-value=92 Score=28.61 Aligned_cols=28 Identities=32% Similarity=0.349 Sum_probs=23.6
Q ss_pred cccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 291 SKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 291 AKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
+-|||-+.+-.+|.++|+++|++|.++-
T Consensus 6 lItG~~~~IG~~la~~l~~~g~~vi~~~ 33 (259)
T PRK12384 6 VVIGGGQTLGAFLCHGLAEEGYRVAVAD 33 (259)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 3468888888999999999999987764
No 155
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=20.73 E-value=1.9e+02 Score=30.26 Aligned_cols=35 Identities=34% Similarity=0.617 Sum_probs=29.6
Q ss_pred CCCCceEEEEecccccccccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 274 GANVMNVILVAAECGPWSKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 274 ~~n~MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
.+..||||. |||=|=+-..|-+.|.++|++|.++-
T Consensus 117 ~~~~mkILV----------TGatGFIGs~Lv~~Ll~~G~~V~~ld 151 (436)
T PLN02166 117 GRKRLRIVV----------TGGAGFVGSHLVDKLIGRGDEVIVID 151 (436)
T ss_pred ccCCCEEEE----------ECCccHHHHHHHHHHHHCCCEEEEEe
Confidence 456799764 68899999999999999999998874
No 156
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=20.57 E-value=90 Score=29.22 Aligned_cols=27 Identities=33% Similarity=0.535 Sum_probs=23.6
Q ss_pred cccccHhHHHhHHHHHHHHCCCeEEEE
Q 015971 291 SKTGGLGDVAGALPKALARRGHRVMVV 317 (397)
Q Consensus 291 AKTGGLGDVvgSLPKALa~~GhdVrVV 317 (397)
+-|||-|-+-..|.++|.++|++|.++
T Consensus 3 lV~GatG~iG~~l~~~l~~~g~~V~~~ 29 (328)
T TIGR01179 3 LVTGGAGYIGSHTVRQLLESGHEVVVL 29 (328)
T ss_pred EEeCCCCHHHHHHHHHHHhCCCeEEEE
Confidence 347999999999999999999998765
No 157
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=20.50 E-value=96 Score=27.70 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=22.5
Q ss_pred ccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 292 KTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 292 KTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
-|||-|-+-..|.+.|.++|++|.++.
T Consensus 3 ItG~~g~iG~~la~~l~~~G~~v~~~~ 29 (239)
T TIGR01830 3 VTGASRGIGRAIALKLAKEGAKVIITY 29 (239)
T ss_pred EECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 367778888899999999999987764
No 158
>PRK07814 short chain dehydrogenase; Provisional
Probab=20.35 E-value=90 Score=29.04 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=21.5
Q ss_pred ccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 292 KTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 292 KTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
-|||-+-+-.++.+.|+++|++|.++.
T Consensus 15 ItGasggIG~~~a~~l~~~G~~Vi~~~ 41 (263)
T PRK07814 15 VTGAGRGLGAAIALAFAEAGADVLIAA 41 (263)
T ss_pred EECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 346677777888999999999987664
No 159
>PRK06179 short chain dehydrogenase; Provisional
Probab=20.33 E-value=92 Score=28.89 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=21.9
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEEeeC
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVVAPH 320 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVVmP~ 320 (397)
|||-|-+-.+|.+.|+++|++|.++.-.
T Consensus 10 tGasg~iG~~~a~~l~~~g~~V~~~~r~ 37 (270)
T PRK06179 10 TGASSGIGRATAEKLARAGYRVFGTSRN 37 (270)
T ss_pred ecCCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4555666688899999999999887643
No 160
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=20.20 E-value=1.3e+02 Score=30.33 Aligned_cols=30 Identities=33% Similarity=0.612 Sum_probs=20.9
Q ss_pred ceEEEEecccccccccccHhHHHhHHHHHHHHCCC-eEEEEe
Q 015971 278 MNVILVAAECGPWSKTGGLGDVAGALPKALARRGH-RVMVVA 318 (397)
Q Consensus 278 MkILfVASE~aPfAKTGGLGDVvgSLPKALa~~Gh-dVrVVm 318 (397)
|+|+.|. ||+|=.+.++ +|+++|+ +|.|+=
T Consensus 1 ~~V~IiG---------gGiaGla~A~--~L~~~g~~~v~v~E 31 (414)
T TIGR03219 1 LRVAIIG---------GGIAGVALAL--NLCKHSHLNVQLFE 31 (414)
T ss_pred CeEEEEC---------CCHHHHHHHH--HHHhcCCCCEEEEe
Confidence 5666665 5676666555 8888885 888853
No 161
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=20.11 E-value=98 Score=27.80 Aligned_cols=25 Identities=32% Similarity=0.647 Sum_probs=20.9
Q ss_pred cccHhHHHhHHHHHHHHCCCeEEEE
Q 015971 293 TGGLGDVAGALPKALARRGHRVMVV 317 (397)
Q Consensus 293 TGGLGDVvgSLPKALa~~GhdVrVV 317 (397)
|||-|.+...|.+.|+++|++|.++
T Consensus 11 ~Gasg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 11 TGASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred eCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 3666777788999999999998777
No 162
>PLN02650 dihydroflavonol-4-reductase
Probab=20.06 E-value=1.1e+02 Score=29.99 Aligned_cols=28 Identities=29% Similarity=0.271 Sum_probs=24.5
Q ss_pred cccccHhHHHhHHHHHHHHCCCeEEEEe
Q 015971 291 SKTGGLGDVAGALPKALARRGHRVMVVA 318 (397)
Q Consensus 291 AKTGGLGDVvgSLPKALa~~GhdVrVVm 318 (397)
+-|||-|-+-..|.++|.++|++|+++.
T Consensus 9 LVTGatGfIGs~l~~~L~~~G~~V~~~~ 36 (351)
T PLN02650 9 CVTGASGFIGSWLVMRLLERGYTVRATV 36 (351)
T ss_pred EEeCCcHHHHHHHHHHHHHCCCEEEEEE
Confidence 3579999999999999999999998764
Done!