Query 015972
Match_columns 397
No_of_seqs 290 out of 1406
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 02:37:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015972.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015972hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 7.8E-55 1.7E-59 435.6 33.2 307 64-395 81-407 (431)
2 KOG1339 Aspartyl protease [Pos 100.0 2.2E-51 4.7E-56 408.2 33.4 318 56-395 35-372 (398)
3 PTZ00165 aspartyl protease; Pr 100.0 9.1E-48 2E-52 387.0 29.6 293 54-395 109-427 (482)
4 cd05472 cnd41_like Chloroplast 100.0 3.3E-47 7.2E-52 364.9 29.6 265 67-394 1-277 (299)
5 cd05475 nucellin_like Nucellin 100.0 4.6E-47 1E-51 359.2 29.3 249 66-395 1-252 (273)
6 cd05478 pepsin_A Pepsin A, asp 100.0 3.4E-47 7.3E-52 367.8 28.0 279 64-394 7-298 (317)
7 cd05490 Cathepsin_D2 Cathepsin 100.0 8.4E-47 1.8E-51 366.2 28.9 282 64-395 3-307 (325)
8 cd05486 Cathespin_E Cathepsin 100.0 5.1E-47 1.1E-51 366.4 26.5 277 68-395 1-298 (316)
9 cd05477 gastricsin Gastricsins 100.0 2.7E-46 5.9E-51 361.6 29.4 281 65-395 1-299 (318)
10 cd05488 Proteinase_A_fungi Fun 100.0 1.8E-46 4E-51 363.1 27.8 282 64-395 7-302 (320)
11 cd05489 xylanase_inhibitor_I_l 100.0 7.1E-46 1.5E-50 363.3 31.9 304 74-395 2-342 (362)
12 cd06096 Plasmepsin_5 Plasmepsi 100.0 2.9E-46 6.2E-51 362.6 28.4 274 66-395 2-304 (326)
13 cd06098 phytepsin Phytepsin, a 100.0 2E-45 4.3E-50 355.3 29.7 271 63-395 6-299 (317)
14 cd05485 Cathepsin_D_like Cathe 100.0 1.3E-45 2.9E-50 358.2 28.0 282 63-394 7-310 (329)
15 cd05487 renin_like Renin stimu 100.0 3.7E-45 8E-50 354.8 27.9 282 64-395 5-307 (326)
16 PTZ00147 plasmepsin-1; Provisi 100.0 7E-45 1.5E-49 363.5 28.2 287 53-395 127-430 (453)
17 PTZ00013 plasmepsin 4 (PM4); P 100.0 7.7E-44 1.7E-48 355.3 29.0 287 53-395 126-429 (450)
18 cd05473 beta_secretase_like Be 100.0 2E-43 4.3E-48 347.7 28.2 292 67-395 3-326 (364)
19 cd05476 pepsin_A_like_plant Ch 100.0 1.1E-41 2.3E-46 321.2 25.8 225 67-395 1-244 (265)
20 cd06097 Aspergillopepsin_like 100.0 8.6E-42 1.9E-46 324.1 23.9 212 68-303 1-225 (278)
21 cd05474 SAP_like SAPs, pepsin- 100.0 8.5E-41 1.8E-45 319.7 23.8 246 67-395 2-276 (295)
22 PF00026 Asp: Eukaryotic aspar 100.0 7.1E-40 1.5E-44 315.9 15.5 279 67-394 1-297 (317)
23 cd05471 pepsin_like Pepsin-lik 100.0 3.1E-38 6.7E-43 299.4 25.1 216 68-307 1-233 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 8.5E-30 1.8E-34 222.6 14.4 156 68-237 1-164 (164)
25 cd05470 pepsin_retropepsin_lik 99.9 1.1E-22 2.3E-27 165.6 12.6 107 70-200 1-109 (109)
26 PF14541 TAXi_C: Xylanase inhi 99.8 8.8E-19 1.9E-23 152.7 11.0 133 257-395 1-143 (161)
27 cd05483 retropepsin_like_bacte 98.1 1.3E-05 2.7E-10 62.8 6.9 93 67-202 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 96.1 0.048 1E-06 44.9 8.8 95 65-202 9-103 (121)
29 PF13650 Asp_protease_2: Aspar 95.3 0.14 2.9E-06 39.0 8.3 89 70-201 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 94.0 0.45 9.7E-06 39.2 8.8 31 65-97 14-44 (124)
31 cd05484 retropepsin_like_LTR_2 91.1 0.26 5.6E-06 38.1 3.5 28 68-97 1-28 (91)
32 TIGR02281 clan_AA_DTGA clan AA 88.8 1 2.2E-05 36.9 5.4 35 256-298 10-44 (121)
33 PF13975 gag-asp_proteas: gag- 86.8 1.2 2.7E-05 32.8 4.3 31 65-97 6-36 (72)
34 PF13650 Asp_protease_2: Aspar 85.7 1.3 2.7E-05 33.5 4.1 29 265-298 3-31 (90)
35 cd05484 retropepsin_like_LTR_2 82.7 2.1 4.6E-05 32.9 4.2 30 264-298 4-33 (91)
36 PF13975 gag-asp_proteas: gag- 81.3 2.9 6.3E-05 30.7 4.3 30 264-298 12-41 (72)
37 PF00077 RVP: Retroviral aspar 78.8 3.2 7E-05 32.3 4.1 27 69-97 7-33 (100)
38 cd05483 retropepsin_like_bacte 78.6 4.1 8.9E-05 31.0 4.6 30 264-298 6-35 (96)
39 cd06095 RP_RTVL_H_like Retrope 75.9 3.9 8.4E-05 31.1 3.7 29 265-298 3-31 (86)
40 COG3577 Predicted aspartyl pro 73.2 20 0.00043 32.2 7.8 77 55-166 95-171 (215)
41 PF11925 DUF3443: Protein of u 71.9 35 0.00075 33.5 9.7 56 146-203 82-149 (370)
42 cd05482 HIV_retropepsin_like R 71.7 5.5 0.00012 30.7 3.5 25 71-97 2-26 (87)
43 cd05479 RP_DDI RP_DDI; retrope 70.6 6.5 0.00014 32.2 4.1 30 264-298 20-49 (124)
44 PF00077 RVP: Retroviral aspar 67.5 5.5 0.00012 30.9 2.9 28 263-295 8-35 (100)
45 cd06095 RP_RTVL_H_like Retrope 67.2 7.2 0.00016 29.6 3.4 25 71-97 2-26 (86)
46 cd05481 retropepsin_like_LTR_1 56.2 14 0.0003 28.7 3.2 30 265-298 3-32 (93)
47 PF12384 Peptidase_A2B: Ty3 tr 55.9 15 0.00033 31.7 3.6 29 69-97 34-62 (177)
48 PF09668 Asp_protease: Asparty 53.0 18 0.00039 29.8 3.6 30 264-298 28-57 (124)
49 TIGR03698 clan_AA_DTGF clan AA 52.8 11 0.00023 30.2 2.1 22 277-298 17-39 (107)
50 COG3577 Predicted aspartyl pro 49.3 27 0.00058 31.4 4.2 41 250-298 98-138 (215)
51 COG5550 Predicted aspartyl pro 42.9 17 0.00038 29.7 1.9 20 279-298 29-49 (125)
52 PF09668 Asp_protease: Asparty 38.0 21 0.00045 29.4 1.7 36 66-104 23-58 (124)
53 TIGR03698 clan_AA_DTGF clan AA 34.9 50 0.0011 26.3 3.4 27 70-96 2-33 (107)
54 cd05472 cnd41_like Chloroplast 29.5 52 0.0011 31.1 3.2 45 53-97 133-188 (299)
55 cd05476 pepsin_A_like_plant Ch 29.4 99 0.0021 28.6 5.0 18 80-97 176-193 (265)
56 PF08284 RVP_2: Retroviral asp 25.8 98 0.0021 25.7 3.9 29 67-97 21-49 (135)
57 cd06098 phytepsin Phytepsin, a 25.8 72 0.0016 30.5 3.5 32 66-97 188-227 (317)
58 cd05471 pepsin_like Pepsin-lik 25.5 94 0.002 28.6 4.2 43 53-97 169-219 (283)
59 cd05475 nucellin_like Nucellin 25.5 75 0.0016 29.6 3.5 32 66-97 157-194 (273)
60 PF08284 RVP_2: Retroviral asp 24.9 1.8E+02 0.0039 24.1 5.3 22 277-298 33-54 (135)
61 cd00303 retropepsin_like Retro 23.1 1.4E+02 0.0031 20.6 4.1 20 278-297 11-30 (92)
62 PF05585 DUF1758: Putative pep 21.0 47 0.001 28.4 1.0 19 75-94 8-26 (164)
63 cd06097 Aspergillopepsin_like 20.3 1E+02 0.0022 28.8 3.2 28 264-294 4-31 (278)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=7.8e-55 Score=435.61 Aligned_cols=307 Identities=28% Similarity=0.517 Sum_probs=251.4
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCC----CCCCCCccccccCCCCCCCCCCC
Q 015972 64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSND----LVPCEDPICASLHAPGHHNCEDP 139 (397)
Q Consensus 64 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S----~~~C~s~~C~~~~~~~~~~c~~~ 139 (397)
++++|+++|.||||||++.|+|||||+++||+|. +|..|..+.++.|||++| .++|+++.|..+.. ...|..+
T Consensus 81 ~~~~Y~v~i~iGTPpq~~~vi~DTGS~l~Wv~C~-~C~~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~--~~~c~~~ 157 (431)
T PLN03146 81 NGGEYLMNISIGTPPVPILAIADTGSDLIWTQCK-PCDDCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGN--QASCSDE 157 (431)
T ss_pred CCccEEEEEEcCCCCceEEEEECCCCCcceEcCC-CCcccccCCCCcccCCCCCCCcccCCCCcccccCCC--CCCCCCC
Confidence 4679999999999999999999999999999999 999999888999999998 48999999987653 2347665
Q ss_pred CCCcceeeeCCCCeEEEEEEEEEEEeeccCC-CcCCCceEEEeeEecCCCCCCCCccEEEecCCCCCChhhhhhcccccc
Q 015972 140 AQCDYELEYADGGSSLGVLVKDAFAFNYTNG-QRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIR 218 (397)
Q Consensus 140 ~~~~~~i~Yg~Gs~~~G~~~~D~v~~~~~~g-~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~ 218 (397)
+.|.|.+.|++|+.+.|.+++|+|+|+...+ ...++++.|||++...+.+ ....+||||||++.+|+++||... +.
T Consensus 158 ~~c~y~i~Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f-~~~~~GilGLG~~~~Sl~sql~~~--~~ 234 (431)
T PLN03146 158 NTCTYSYSYGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTF-DEKGSGIVGLGGGPLSLISQLGSS--IG 234 (431)
T ss_pred CCCeeEEEeCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCc-cCCCceeEecCCCCccHHHHhhHh--hC
Confidence 6799999999998889999999999975322 1357899999999874433 235899999999999999999764 55
Q ss_pred eeeEEeecC-----CCceeEEeCCCCCCC-CCcEEeecccCC-CCceeEEeeEEEECCeEeecCC--------CCEEEcC
Q 015972 219 NVVGHCLSG-----GGGGFLFFGDDLYDS-SRVVWTSMSSDY-TKYYSPGVAELFFGGETTGLKN--------LPVVFDS 283 (397)
Q Consensus 219 ~~Fs~~l~~-----~~~G~l~fG~~~~~~-g~~~~~pl~~~~-~~~y~v~l~~i~v~g~~~~~~~--------~~~iiDS 283 (397)
++||+||.+ ...|+|+||+..+.. ..+.|+||+.+. ..+|.|.+++|+||++.+.+.. +.+||||
T Consensus 235 ~~FSycL~~~~~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDS 314 (431)
T PLN03146 235 GKFSYCLVPLSSDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDS 314 (431)
T ss_pred CcEEEECCCCCCCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeC
Confidence 699999963 247999999865543 458999998643 2799999999999999876532 4799999
Q ss_pred CCcceecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEECCCee
Q 015972 284 GSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAY 363 (397)
Q Consensus 284 GTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~y 363 (397)
||++++||+++|++|+++|.+++...... .....++.||+... . ..+|+|+|+|+| ++++|+|++|
T Consensus 315 GTt~t~Lp~~~y~~l~~~~~~~~~~~~~~--~~~~~~~~C~~~~~------~--~~~P~i~~~F~G----a~~~l~~~~~ 380 (431)
T PLN03146 315 GTTLTLLPSDFYSELESAVEEAIGGERVS--DPQGLLSLCYSSTS------D--IKLPIITAHFTG----ADVKLQPLNT 380 (431)
T ss_pred CccceecCHHHHHHHHHHHHHHhccccCC--CCCCCCCccccCCC------C--CCCCeEEEEECC----CeeecCccee
Confidence 99999999999999999999888643211 12234578997431 1 248999999997 8999999999
Q ss_pred EEEeCCCcEEEEEEeCCcCCCCCeeEEccccc
Q 015972 364 LIISNKGNVCLGILNGAEVGLQDLNVIGGIGD 395 (397)
Q Consensus 364 i~~~~~~~~C~~~~~~~~~~~~~~~IlGdv~~ 395 (397)
++...++..|+++.... +.+||||+++
T Consensus 381 ~~~~~~~~~Cl~~~~~~-----~~~IlG~~~q 407 (431)
T PLN03146 381 FVKVSEDLVCFAMIPTS-----SIAIFGNLAQ 407 (431)
T ss_pred EEEcCCCcEEEEEecCC-----CceEECeeeE
Confidence 99877778999987643 2589999875
No 2
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-51 Score=408.17 Aligned_cols=318 Identities=31% Similarity=0.593 Sum_probs=258.5
Q ss_pred EeeeecccCCeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCC-CCCCCCCCCCCCCCC----CCCCCCccccccCC
Q 015972 56 FQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV-RCVEAPHPLYRPSND----LVPCEDPICASLHA 130 (397)
Q Consensus 56 ~pl~g~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~-~C~~~~~~~f~p~~S----~~~C~s~~C~~~~~ 130 (397)
.+...+.+..++|+++|.||||||+|.|+|||||+++||+|. +|. .|..+.++.|+|++| .+.|.++.|+....
T Consensus 35 ~~~~~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~-~c~~~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~ 113 (398)
T KOG1339|consen 35 LPESLSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCA-PCSSACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQ 113 (398)
T ss_pred cccccccccccccEEEEecCCCCeeeEEEEeCCCCceeeccc-cccccccccCCCccCccccccccccCCCCcccccccc
Confidence 333444556889999999999999999999999999999998 999 798765566999999 48999999998763
Q ss_pred CCCCCCCCCCCCcceeeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCCCCC-CCccEEEecCCCCCChhh
Q 015972 131 PGHHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASY-HPLDGILGLGKGKSSIVS 209 (397)
Q Consensus 131 ~~~~~c~~~~~~~~~i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~-~~~~GIlGLg~~~~s~~~ 209 (397)
.|..++.|.|.+.|++|+.++|.+++|+|+|+..+ ...++++.|||+..+...+.. .+.+||||||++.++++.
T Consensus 114 ----~~~~~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~-~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~ 188 (398)
T KOG1339|consen 114 ----SCSPNSSCPYSIQYGDGSSTSGYLATDTVTFGGTT-SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPS 188 (398)
T ss_pred ----CcccCCcCceEEEeCCCCceeEEEEEEEEEEcccc-ccccccEEEEeeecCccccccccccceEeecCCCCcccee
Confidence 37777899999999998799999999999997422 256778999999998542112 568999999999999999
Q ss_pred hhhcccccceeeEEeecCC-----CceeEEeCCCCC--CCCCcEEeecccCCCCceeEEeeEEEECCeE-----e-ecCC
Q 015972 210 QLHSQKLIRNVVGHCLSGG-----GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGET-----T-GLKN 276 (397)
Q Consensus 210 ql~~~~~i~~~Fs~~l~~~-----~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~g~~-----~-~~~~ 276 (397)
|+.......++||+||.+. .+|.|+||+.+. ..+.+.|+||..+...||+|.+.+|+|+++. . ..+.
T Consensus 189 q~~~~~~~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~~l~~tPl~~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~ 268 (398)
T KOG1339|consen 189 QLPSFYNAINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTGSLTYTPLLSNPSTYYQVNLDGISVGGKRPIGSSLFCTDG 268 (398)
T ss_pred ecccccCCceeEEEEeCCCCCCCCCCcEEEECCCcccCcCCceEEEeeccCCCccEEEEEeEEEECCccCCCcceEecCC
Confidence 9998876677999999954 479999998875 4678999999998534999999999999843 2 2224
Q ss_pred CCEEEcCCCcceecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEE
Q 015972 277 LPVVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLF 356 (397)
Q Consensus 277 ~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~ 356 (397)
+++|+||||++++||+++|++|.++|.+++. . ....+.++..|+...... ..+|.|+|+|++ ++.|
T Consensus 269 ~~~iiDSGTs~t~lp~~~y~~i~~~~~~~~~---~-~~~~~~~~~~C~~~~~~~-------~~~P~i~~~f~~---g~~~ 334 (398)
T KOG1339|consen 269 GGAIIDSGTSLTYLPTSAYNALREAIGAEVS---V-VGTDGEYFVPCFSISTSG-------VKLPDITFHFGG---GAVF 334 (398)
T ss_pred CCEEEECCcceeeccHHHHHHHHHHHHhhee---c-cccCCceeeecccCCCCc-------ccCCcEEEEECC---CcEE
Confidence 8899999999999999999999999998741 0 011233456899865310 248999999995 4999
Q ss_pred EECCCeeEEEeCCCcE-EEEEEeCCcCCCCCeeEEccccc
Q 015972 357 ELTPEAYLIISNKGNV-CLGILNGAEVGLQDLNVIGGIGD 395 (397)
Q Consensus 357 ~l~p~~yi~~~~~~~~-C~~~~~~~~~~~~~~~IlGdv~~ 395 (397)
.+++++|+++..++.. |++++...... ..||||++++
T Consensus 335 ~l~~~~y~~~~~~~~~~Cl~~~~~~~~~--~~~ilG~~~~ 372 (398)
T KOG1339|consen 335 SLPPKNYLVEVSDGGGVCLAFFNGMDSG--PLWILGDVFQ 372 (398)
T ss_pred EeCccceEEEECCCCCceeeEEecCCCC--ceEEEchHHh
Confidence 9999999998766544 99988876422 4899999874
No 3
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=9.1e-48 Score=387.00 Aligned_cols=293 Identities=21% Similarity=0.371 Sum_probs=229.8
Q ss_pred eeEeeeecccCCeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCC
Q 015972 54 LLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGH 133 (397)
Q Consensus 54 ~~~pl~g~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~ 133 (397)
...||. .+.+.+|+++|+||||||+|.|+|||||++|||+|. .|..|..+.++.|||++|+ +++...
T Consensus 109 ~~~~l~--n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~-~C~~~~C~~~~~yd~s~SS------Ty~~~~---- 175 (482)
T PTZ00165 109 LQQDLL--NFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSK-ECKSGGCAPHRKFDPKKSS------TYTKLK---- 175 (482)
T ss_pred cceecc--cccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEch-hcCcccccccCCCCccccC------CcEecC----
Confidence 456665 356889999999999999999999999999999999 8986544568899999985 222210
Q ss_pred CCCCCCCCCcceeeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCC-CCCCCccEEEecCCCCC-------
Q 015972 134 HNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKS------- 205 (397)
Q Consensus 134 ~~c~~~~~~~~~i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~------- 205 (397)
+ ......+.++||+| ++.|.+++|+|+|+ +..++++.||+++..+.. +.....|||||||++.+
T Consensus 176 --~-~~~~~~~~i~YGsG-s~~G~l~~DtV~ig----~l~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~ 247 (482)
T PTZ00165 176 --L-GDESAETYIQYGTG-ECVLALGKDTVKIG----GLKVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKK 247 (482)
T ss_pred --C-CCccceEEEEeCCC-cEEEEEEEEEEEEC----CEEEccEEEEEEEeccccccccccccceeecCCCcccccccCC
Confidence 0 00122577999999 78899999999995 578899999999986443 55567899999998753
Q ss_pred --Chhhhhhccccc-ceeeEEeecC--CCceeEEeCCCCC--C--CCCcEEeecccCCCCceeEEeeEEEECCeEeec--
Q 015972 206 --SIVSQLHSQKLI-RNVVGHCLSG--GGGGFLFFGDDLY--D--SSRVVWTSMSSDYTKYYSPGVAELFFGGETTGL-- 274 (397)
Q Consensus 206 --s~~~ql~~~~~i-~~~Fs~~l~~--~~~G~l~fG~~~~--~--~g~~~~~pl~~~~~~~y~v~l~~i~v~g~~~~~-- 274 (397)
+++.+|.+||+| +++||+||.+ +.+|+|+|||+|+ . .+++.|+|+... .||+|.+++|+++++.+..
T Consensus 248 ~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~~~--~yW~i~l~~i~vgg~~~~~~~ 325 (482)
T PTZ00165 248 ALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVIST--DYWEIEVVDILIDGKSLGFCD 325 (482)
T ss_pred CCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcccc--ceEEEEeCeEEECCEEeeecC
Confidence 467889999999 8999999974 3479999999874 2 468999999876 6999999999999987654
Q ss_pred CCCCEEEcCCCcceecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecC-CCC
Q 015972 275 KNLPVVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDG-KTR 353 (397)
Q Consensus 275 ~~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~-~~~ 353 (397)
....+|+||||+++++|++++++|.+++... ..|++.. .+|+|+|+|+|. ...
T Consensus 326 ~~~~aIiDTGTSli~lP~~~~~~i~~~i~~~---------------~~C~~~~-----------~lP~itf~f~g~~g~~ 379 (482)
T PTZ00165 326 RKCKAAIDTGSSLITGPSSVINPLLEKIPLE---------------EDCSNKD-----------SLPRISFVLEDVNGRK 379 (482)
T ss_pred CceEEEEcCCCccEeCCHHHHHHHHHHcCCc---------------ccccccc-----------cCCceEEEECCCCCce
Confidence 3578999999999999999999988876321 2487643 489999999862 123
Q ss_pred eEEEECCCeeEEEe----CCCcEEE-EEEeCCcCC-CCCeeEEccccc
Q 015972 354 TLFELTPEAYLIIS----NKGNVCL-GILNGAEVG-LQDLNVIGGIGD 395 (397)
Q Consensus 354 ~~~~l~p~~yi~~~----~~~~~C~-~~~~~~~~~-~~~~~IlGdv~~ 395 (397)
++|.|+|++|+++. ..+..|+ ++...+..+ .++.|||||++.
T Consensus 380 v~~~l~p~dYi~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Fl 427 (482)
T PTZ00165 380 IKFDMDPEDYVIEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFI 427 (482)
T ss_pred EEEEEchHHeeeecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhh
Confidence 58999999999974 2345897 676543211 245899999863
No 4
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=3.3e-47 Score=364.90 Aligned_cols=265 Identities=31% Similarity=0.523 Sum_probs=215.3
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCccee
Q 015972 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 146 (397)
Q Consensus 67 ~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~~~~~i 146 (397)
+|+++|.||||||++.|+|||||+++||+|. +| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~-~c-----------------------------------------~~~~i 38 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ-PC-----------------------------------------CLYQV 38 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC-CC-----------------------------------------Ceeee
Confidence 5999999999999999999999999999887 43 37889
Q ss_pred eeCCCCeEEEEEEEEEEEeeccCCCc-CCCceEEEeeEecCCCCCCCCccEEEecCCCCCChhhhhhcccccceeeEEee
Q 015972 147 EYADGGSSLGVLVKDAFAFNYTNGQR-LNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHCL 225 (397)
Q Consensus 147 ~Yg~Gs~~~G~~~~D~v~~~~~~g~~-~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs~~l 225 (397)
+|++|+.++|.+++|+|+|+ +. .++++.|||+...+..+ ...+||||||+..++++.|+..+ .+++||+||
T Consensus 39 ~Yg~Gs~~~G~~~~D~v~ig----~~~~~~~~~Fg~~~~~~~~~--~~~~GilGLg~~~~s~~~ql~~~--~~~~FS~~L 110 (299)
T cd05472 39 SYGDGSYTTGDLATDTLTLG----SSDVVPGFAFGCGHDNEGLF--GGAAGLLGLGRGKLSLPSQTASS--YGGVFSYCL 110 (299)
T ss_pred EeCCCceEEEEEEEEEEEeC----CCCccCCEEEECCccCCCcc--CCCCEEEECCCCcchHHHHhhHh--hcCceEEEc
Confidence 99999888999999999996 44 67899999998774432 36899999999999999998765 478999999
Q ss_pred cC---CCceeEEeCCCCCCCCCcEEeecccCCC--CceeEEeeEEEECCeEeecC-----CCCEEEcCCCcceecCHHHH
Q 015972 226 SG---GGGGFLFFGDDLYDSSRVVWTSMSSDYT--KYYSPGVAELFFGGETTGLK-----NLPVVFDSGSSYTYLNRVTY 295 (397)
Q Consensus 226 ~~---~~~G~l~fG~~~~~~g~~~~~pl~~~~~--~~y~v~l~~i~v~g~~~~~~-----~~~~iiDSGTs~~~lp~~~~ 295 (397)
.+ ..+|+|+||++++..+++.|+|+...+. .+|.|.+++|+|+++.+... ...+||||||++++||+++|
T Consensus 111 ~~~~~~~~G~l~fGg~d~~~g~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~ 190 (299)
T cd05472 111 PDRSSSSSGYLSFGAAASVPAGASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAY 190 (299)
T ss_pred cCCCCCCCceEEeCCccccCCCceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHH
Confidence 85 4589999999987688999999987642 69999999999999987642 46899999999999999999
Q ss_pred HHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEECCCeeEEEe-CCCcEEE
Q 015972 296 QTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIIS-NKGNVCL 374 (397)
Q Consensus 296 ~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~yi~~~-~~~~~C~ 374 (397)
++|.+++.++.... ........++.|++.... ....+|+|+|+|++ +++++|+|++|++.. ..+..|+
T Consensus 191 ~~l~~~l~~~~~~~--~~~~~~~~~~~C~~~~~~------~~~~~P~i~f~f~~---g~~~~l~~~~y~~~~~~~~~~C~ 259 (299)
T cd05472 191 AALRDAFRAAMAAY--PRAPGFSILDTCYDLSGF------RSVSVPTVSLHFQG---GADVELDASGVLYPVDDSSQVCL 259 (299)
T ss_pred HHHHHHHHHHhccC--CCCCCCCCCCccCcCCCC------cCCccCCEEEEECC---CCEEEeCcccEEEEecCCCCEEE
Confidence 99999998876422 111122234469865321 11358999999985 499999999999843 4467899
Q ss_pred EEEeCCcCCCCCeeEEcccc
Q 015972 375 GILNGAEVGLQDLNVIGGIG 394 (397)
Q Consensus 375 ~~~~~~~~~~~~~~IlGdv~ 394 (397)
++..... ....+|||+++
T Consensus 260 ~~~~~~~--~~~~~ilG~~f 277 (299)
T cd05472 260 AFAGTSD--DGGLSIIGNVQ 277 (299)
T ss_pred EEeCCCC--CCCCEEEchHH
Confidence 8876532 13479999985
No 5
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=4.6e-47 Score=359.18 Aligned_cols=249 Identities=64% Similarity=1.136 Sum_probs=208.1
Q ss_pred eeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcce
Q 015972 66 GYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 145 (397)
Q Consensus 66 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~~~~~ 145 (397)
++|+++|.||||||++.|+|||||+++||+|..+|..| .|.|+
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~~c-------------------------------------~c~~~ 43 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCTGC-------------------------------------QCDYE 43 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCCCC-------------------------------------cCccE
Confidence 47999999999999999999999999999984245433 35899
Q ss_pred eeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCCC--CCCCccEEEecCCCCCChhhhhhcccccceeeEE
Q 015972 146 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGA--SYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGH 223 (397)
Q Consensus 146 i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~--~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs~ 223 (397)
++|++|+.+.|.+++|+|+|+..+++..++++.|||+..+...+ .....+||||||++..++++||.++++|+++||+
T Consensus 44 i~Ygd~~~~~G~~~~D~v~~~~~~~~~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~Fs~ 123 (273)
T cd05475 44 IEYADGGSSMGVLVTDIFSLKLTNGSRAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNVIGH 123 (273)
T ss_pred eEeCCCCceEEEEEEEEEEEeecCCCcccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCceEEE
Confidence 99998889999999999999865555677899999998764332 3356899999999999999999999988999999
Q ss_pred eecCCCceeEEeCCCCCCCCCcEEeecccCCC-CceeEEeeEEEECCeEeecCCCCEEEcCCCcceecCHHHHHHHHHHH
Q 015972 224 CLSGGGGGFLFFGDDLYDSSRVVWTSMSSDYT-KYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTLTSIM 302 (397)
Q Consensus 224 ~l~~~~~G~l~fG~~~~~~g~~~~~pl~~~~~-~~y~v~l~~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l~~~i 302 (397)
||++..+|.|+||+..++.+++.|+|+..++. .+|.|.+.+|+|+++........+||||||++++||+++|
T Consensus 124 ~l~~~~~g~l~~G~~~~~~g~i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y------- 196 (273)
T cd05475 124 CLSSNGGGFLFFGDDLVPSSGVTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY------- 196 (273)
T ss_pred EccCCCCeEEEECCCCCCCCCeeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCccc-------
Confidence 99987789999998766778899999987622 6999999999999987665567899999999999999866
Q ss_pred HHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEECCCeeEEEeCCCcEEEEEEeCCcC
Q 015972 303 KKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKGNVCLGILNGAEV 382 (397)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~yi~~~~~~~~C~~~~~~~~~ 382 (397)
+|+|+|+|++...+++++|+|++|++...++..|++++.....
T Consensus 197 -------------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~ 239 (273)
T cd05475 197 -------------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEI 239 (273)
T ss_pred -------------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCc
Confidence 2678999986212279999999999976667799999876532
Q ss_pred CCCCeeEEccccc
Q 015972 383 GLQDLNVIGGIGD 395 (397)
Q Consensus 383 ~~~~~~IlGdv~~ 395 (397)
...+.||||+++.
T Consensus 240 ~~~~~~ilG~~~l 252 (273)
T cd05475 240 GLGNTNIIGDISM 252 (273)
T ss_pred CCCceEEECceEE
Confidence 2245899999874
No 6
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=3.4e-47 Score=367.75 Aligned_cols=279 Identities=20% Similarity=0.338 Sum_probs=224.0
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCc
Q 015972 64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCD 143 (397)
Q Consensus 64 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~~~ 143 (397)
.+.+|+++|.||||||++.|+|||||+++||+|. .|..|..+.++.|+|++|+ +|+. ..+.
T Consensus 7 ~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~-~C~~~~c~~~~~f~~~~Ss------t~~~------------~~~~ 67 (317)
T cd05478 7 LDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSV-YCSSQACSNHNRFNPRQSS------TYQS------------TGQP 67 (317)
T ss_pred cCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecC-CCCcccccccCcCCCCCCc------ceee------------CCcE
Confidence 3789999999999999999999999999999998 8986555567899999885 1211 2568
Q ss_pred ceeeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCCC-CCCCccEEEecCCCCC------Chhhhhhcccc
Q 015972 144 YELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGA-SYHPLDGILGLGKGKS------SIVSQLHSQKL 216 (397)
Q Consensus 144 ~~i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~-~~~~~~GIlGLg~~~~------s~~~ql~~~~~ 216 (397)
|++.|++| ++.|.+++|+|+|+ +..++++.|||+......+ .....+||||||+... +++.+|+++++
T Consensus 68 ~~~~yg~g-s~~G~~~~D~v~ig----~~~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~~g~ 142 (317)
T cd05478 68 LSIQYGTG-SMTGILGYDTVQVG----GISDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNMMSQGL 142 (317)
T ss_pred EEEEECCc-eEEEEEeeeEEEEC----CEEECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHHHhCCC
Confidence 99999999 58999999999995 5678899999998764332 2235899999998753 48899999999
Q ss_pred c-ceeeEEeecCC--CceeEEeCCCCC--CCCCcEEeecccCCCCceeEEeeEEEECCeEeecC-CCCEEEcCCCcceec
Q 015972 217 I-RNVVGHCLSGG--GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLK-NLPVVFDSGSSYTYL 290 (397)
Q Consensus 217 i-~~~Fs~~l~~~--~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~g~~~~~~-~~~~iiDSGTs~~~l 290 (397)
| +++||+||.++ .+|+|+|||++. +.++++|+|+... .+|.|.+++|+|+|+.+... +..+||||||++++|
T Consensus 143 i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~l~~~p~~~~--~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGts~~~l 220 (317)
T cd05478 143 VSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGSLNWVPVTAE--TYWQITVDSVTINGQVVACSGGCQAIVDTGTSLLVG 220 (317)
T ss_pred CCCCEEEEEeCCCCCCCeEEEEcccCHHHccCceEEEECCCC--cEEEEEeeEEEECCEEEccCCCCEEEECCCchhhhC
Confidence 9 89999999864 469999999864 5799999999765 69999999999999988653 468999999999999
Q ss_pred CHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEECCCeeEEEeCCC
Q 015972 291 NRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKG 370 (397)
Q Consensus 291 p~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~yi~~~~~~ 370 (397)
|++++++|.+++..... . ......+|+... .+|.|+|+|+| ++++|+|++|+... +
T Consensus 221 p~~~~~~l~~~~~~~~~-----~--~~~~~~~C~~~~-----------~~P~~~f~f~g----~~~~i~~~~y~~~~--~ 276 (317)
T cd05478 221 PSSDIANIQSDIGASQN-----Q--NGEMVVNCSSIS-----------SMPDVVFTING----VQYPLPPSAYILQD--Q 276 (317)
T ss_pred CHHHHHHHHHHhCCccc-----c--CCcEEeCCcCcc-----------cCCcEEEEECC----EEEEECHHHheecC--C
Confidence 99999999988854321 0 111223687532 37999999976 99999999999864 5
Q ss_pred cEEEEEEeCCcCCCCCeeEEcccc
Q 015972 371 NVCLGILNGAEVGLQDLNVIGGIG 394 (397)
Q Consensus 371 ~~C~~~~~~~~~~~~~~~IlGdv~ 394 (397)
..|+..+.... ..+.||||+.+
T Consensus 277 ~~C~~~~~~~~--~~~~~IlG~~f 298 (317)
T cd05478 277 GSCTSGFQSMG--LGELWILGDVF 298 (317)
T ss_pred CEEeEEEEeCC--CCCeEEechHH
Confidence 68985443322 13579999975
No 7
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=8.4e-47 Score=366.25 Aligned_cols=282 Identities=20% Similarity=0.302 Sum_probs=222.4
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCC----CCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCC
Q 015972 64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV----RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDP 139 (397)
Q Consensus 64 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~----~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~ 139 (397)
.+.+|+++|.||||||++.|+|||||+++||+|. .|. .|. .++.|+|++|+ +|+ .
T Consensus 3 ~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~C~--~~~~y~~~~Ss------T~~--------~---- 61 (325)
T cd05490 3 MDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSV-HCSLLDIACW--LHHKYNSSKSS------TYV--------K---- 61 (325)
T ss_pred cCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcC-CCCCCCcccc--CcCcCCcccCc------cee--------e----
Confidence 4779999999999999999999999999999998 897 455 46899999885 121 1
Q ss_pred CCCcceeeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCC-CCCCCccEEEecCCCCC------Chhhhhh
Q 015972 140 AQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKS------SIVSQLH 212 (397)
Q Consensus 140 ~~~~~~i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~------s~~~ql~ 212 (397)
..|.|.+.|++| .+.|.+++|+|+|+ +..++++.|||++...+. +.....+||||||++.. +++++|+
T Consensus 62 ~~~~~~i~Yg~G-~~~G~~~~D~v~~g----~~~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 136 (325)
T cd05490 62 NGTEFAIQYGSG-SLSGYLSQDTVSIG----GLQVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNIM 136 (325)
T ss_pred CCcEEEEEECCc-EEEEEEeeeEEEEC----CEEEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHHH
Confidence 256899999999 68999999999995 567889999999876432 33456899999998754 4667899
Q ss_pred ccccc-ceeeEEeecCC----CceeEEeCCCCC--CCCCcEEeecccCCCCceeEEeeEEEECCeEeec-CCCCEEEcCC
Q 015972 213 SQKLI-RNVVGHCLSGG----GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGL-KNLPVVFDSG 284 (397)
Q Consensus 213 ~~~~i-~~~Fs~~l~~~----~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~g~~~~~-~~~~~iiDSG 284 (397)
++++| +++||+||.++ .+|+|+||+++. +.+++.|+|+... .+|.|.+++|+|++..... ....+|||||
T Consensus 137 ~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~l~~~~~~~~--~~w~v~l~~i~vg~~~~~~~~~~~aiiDSG 214 (325)
T cd05490 137 AQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGDLHYVNVTRK--AYWQIHMDQVDVGSGLTLCKGGCEAIVDTG 214 (325)
T ss_pred hcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCceEEEEcCcc--eEEEEEeeEEEECCeeeecCCCCEEEECCC
Confidence 99999 89999999842 369999999864 5789999999765 6999999999998875432 3468999999
Q ss_pred CcceecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEECCCeeE
Q 015972 285 SSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYL 364 (397)
Q Consensus 285 Ts~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~yi 364 (397)
|+++++|++++++|.+++.+. . .. ...+..+|+... .+|+|+|+|+| +.++|+|++|+
T Consensus 215 Tt~~~~p~~~~~~l~~~~~~~-~-----~~-~~~~~~~C~~~~-----------~~P~i~f~fgg----~~~~l~~~~y~ 272 (325)
T cd05490 215 TSLITGPVEEVRALQKAIGAV-P-----LI-QGEYMIDCEKIP-----------TLPVISFSLGG----KVYPLTGEDYI 272 (325)
T ss_pred CccccCCHHHHHHHHHHhCCc-c-----cc-CCCEEecccccc-----------cCCCEEEEECC----EEEEEChHHeE
Confidence 999999999999999887532 1 11 122345687532 48999999986 99999999999
Q ss_pred EEeCC--CcEEEE-EEeCCc-CCCCCeeEEccccc
Q 015972 365 IISNK--GNVCLG-ILNGAE-VGLQDLNVIGGIGD 395 (397)
Q Consensus 365 ~~~~~--~~~C~~-~~~~~~-~~~~~~~IlGdv~~ 395 (397)
++... ...|+. +..... ......|||||++.
T Consensus 273 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~ilGd~fl 307 (325)
T cd05490 273 LKVSQRGTTICLSGFMGLDIPPPAGPLWILGDVFI 307 (325)
T ss_pred EeccCCCCCEEeeEEEECCCCCCCCceEEEChHhh
Confidence 97543 358985 544221 11245899999763
No 8
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=5.1e-47 Score=366.36 Aligned_cols=277 Identities=19% Similarity=0.306 Sum_probs=219.8
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCC--CCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcce
Q 015972 68 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV--RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 145 (397)
Q Consensus 68 Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~--~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~~~~~ 145 (397)
|+++|+||||||+++|+|||||+++||+|. .|. .|. .++.|+|++|+ +|+ ...|.|+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~-~C~~~~C~--~~~~y~~~~Ss------T~~------------~~~~~~~ 59 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSI-YCTSQACT--KHNRFQPSESS------TYV------------SNGEAFS 59 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCcccC--ccceECCCCCc------ccc------------cCCcEEE
Confidence 799999999999999999999999999998 897 465 56889999885 121 2367999
Q ss_pred eeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCC-CCCCCccEEEecCCCCCC------hhhhhhccccc-
Q 015972 146 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSS------IVSQLHSQKLI- 217 (397)
Q Consensus 146 i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~ql~~~~~i- 217 (397)
+.|++| .+.|.+++|+|+|+ +..++++.|||+...... +.....+||||||++..+ ++.+|++|++|
T Consensus 60 i~Yg~g-~~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~qg~i~ 134 (316)
T cd05486 60 IQYGTG-SLTGIIGIDQVTVE----GITVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQNLVE 134 (316)
T ss_pred EEeCCc-EEEEEeeecEEEEC----CEEEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhcCCCC
Confidence 999999 68999999999995 567889999998765332 334578999999987654 57889999999
Q ss_pred ceeeEEeecCC----CceeEEeCCCCC--CCCCcEEeecccCCCCceeEEeeEEEECCeEeec-CCCCEEEcCCCcceec
Q 015972 218 RNVVGHCLSGG----GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGL-KNLPVVFDSGSSYTYL 290 (397)
Q Consensus 218 ~~~Fs~~l~~~----~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~g~~~~~-~~~~~iiDSGTs~~~l 290 (397)
+++||+||.++ ..|+|+|||++. +.+++.|+|+... .||.|.+++|+|+++.+.. ....+||||||+++++
T Consensus 135 ~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~l~~~pi~~~--~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~l 212 (316)
T cd05486 135 LPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQLNWVPVTVQ--GYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLITG 212 (316)
T ss_pred CCEEEEEEccCCCCCCCcEEEEcccCHHHcccceEEEECCCc--eEEEEEeeEEEEecceEecCCCCEEEECCCcchhhc
Confidence 89999999842 479999999864 5799999999875 6999999999999987654 3468999999999999
Q ss_pred CHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEECCCeeEEEe--C
Q 015972 291 NRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIIS--N 368 (397)
Q Consensus 291 p~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~yi~~~--~ 368 (397)
|++++++|.+++.+.. . ...+..+|+... .+|+|+|+|+| +.++|+|++|++.. +
T Consensus 213 P~~~~~~l~~~~~~~~-------~-~~~~~~~C~~~~-----------~~p~i~f~f~g----~~~~l~~~~y~~~~~~~ 269 (316)
T cd05486 213 PSGDIKQLQNYIGATA-------T-DGEYGVDCSTLS-----------LMPSVTFTING----IPYSLSPQAYTLEDQSD 269 (316)
T ss_pred CHHHHHHHHHHhCCcc-------c-CCcEEEeccccc-----------cCCCEEEEECC----EEEEeCHHHeEEecccC
Confidence 9999999887764321 1 111223686532 48999999986 99999999999875 2
Q ss_pred CCcEEEE-EEeCCc-CCCCCeeEEccccc
Q 015972 369 KGNVCLG-ILNGAE-VGLQDLNVIGGIGD 395 (397)
Q Consensus 369 ~~~~C~~-~~~~~~-~~~~~~~IlGdv~~ 395 (397)
.+..|+. +..... ....+.|||||++.
T Consensus 270 ~~~~C~~~~~~~~~~~~~~~~~ILGd~fl 298 (316)
T cd05486 270 GGGYCSSGFQGLDIPPPAGPLWILGDVFI 298 (316)
T ss_pred CCCEEeeEEEECCCCCCCCCeEEEchHHh
Confidence 3468984 544321 11245799999753
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=2.7e-46 Score=361.61 Aligned_cols=281 Identities=23% Similarity=0.386 Sum_probs=223.5
Q ss_pred CeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcc
Q 015972 65 TGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDY 144 (397)
Q Consensus 65 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~~~~ 144 (397)
+.+|+++|.||||||++.|+|||||+++||+|. .|..+....++.|||++|+ +|. ...|.|
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~-~C~~~~C~~~~~f~~~~Ss------T~~------------~~~~~~ 61 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSV-LCQSQACTNHTKFNPSQSS------TYS------------TNGETF 61 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccC-CCCCccccccCCCCcccCC------Cce------------ECCcEE
Confidence 358999999999999999999999999999998 8985333357899999985 121 136799
Q ss_pred eeeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCC-CCCCCccEEEecCCC------CCChhhhhhccccc
Q 015972 145 ELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKG------KSSIVSQLHSQKLI 217 (397)
Q Consensus 145 ~i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~------~~s~~~ql~~~~~i 217 (397)
++.|++| ++.|.+++|+|+|+ +..++++.|||++...+. +.....+||||||++ ..+++.+|++++.|
T Consensus 62 ~~~Yg~G-s~~G~~~~D~i~~g----~~~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g~i 136 (318)
T cd05477 62 SLQYGSG-SLTGIFGYDTVTVQ----GIIITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQNLL 136 (318)
T ss_pred EEEECCc-EEEEEEEeeEEEEC----CEEEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcCCc
Confidence 9999999 68999999999995 567889999999876332 233567999999985 35688999999999
Q ss_pred -ceeeEEeecCC---CceeEEeCCCCC--CCCCcEEeecccCCCCceeEEeeEEEECCeEeec--CCCCEEEcCCCccee
Q 015972 218 -RNVVGHCLSGG---GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGL--KNLPVVFDSGSSYTY 289 (397)
Q Consensus 218 -~~~Fs~~l~~~---~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~g~~~~~--~~~~~iiDSGTs~~~ 289 (397)
+++||+||.+. ..|.|+||++++ +.+++.|+|+... .+|.|.+++|+|+++.+.. .+..+||||||++++
T Consensus 137 ~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~l~~~pv~~~--~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~~~ 214 (318)
T cd05477 137 QAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQIYWTPVTSE--TYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSLLT 214 (318)
T ss_pred CCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCceEEEecCCc--eEEEEEeeEEEECCEEecccCCCceeeECCCCccEE
Confidence 89999999853 469999999864 5789999999875 6999999999999988653 346799999999999
Q ss_pred cCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEECCCeeEEEeCC
Q 015972 290 LNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNK 369 (397)
Q Consensus 290 lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~yi~~~~~ 369 (397)
||++++++|++++.+.... ......+|+... .+|.|+|+|+| +++.|++++|++..
T Consensus 215 lP~~~~~~l~~~~~~~~~~-------~~~~~~~C~~~~-----------~~p~l~~~f~g----~~~~v~~~~y~~~~-- 270 (318)
T cd05477 215 APQQVMSTLMQSIGAQQDQ-------YGQYVVNCNNIQ-----------NLPTLTFTING----VSFPLPPSAYILQN-- 270 (318)
T ss_pred CCHHHHHHHHHHhCCcccc-------CCCEEEeCCccc-----------cCCcEEEEECC----EEEEECHHHeEecC--
Confidence 9999999999888644321 122234587532 37999999986 99999999999864
Q ss_pred CcEEE-EEEeCCcC--CCCCeeEEccccc
Q 015972 370 GNVCL-GILNGAEV--GLQDLNVIGGIGD 395 (397)
Q Consensus 370 ~~~C~-~~~~~~~~--~~~~~~IlGdv~~ 395 (397)
+..|+ ++...... ...+.||||+.+.
T Consensus 271 ~~~C~~~i~~~~~~~~~~~~~~ilG~~fl 299 (318)
T cd05477 271 NGYCTVGIEPTYLPSQNGQPLWILGDVFL 299 (318)
T ss_pred CCeEEEEEEecccCCCCCCceEEEcHHHh
Confidence 45786 67543211 1134799999763
No 10
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=1.8e-46 Score=363.06 Aligned_cols=282 Identities=20% Similarity=0.319 Sum_probs=222.9
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCc
Q 015972 64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCD 143 (397)
Q Consensus 64 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~~~ 143 (397)
.+.+|+++|+||||+|++.|+|||||+++||+|. .|..+....++.|+|++|+ +|. ...|.
T Consensus 7 ~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~-~C~~~~C~~~~~y~~~~Ss------t~~------------~~~~~ 67 (320)
T cd05488 7 LNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSV-KCGSIACFLHSKYDSSASS------TYK------------ANGTE 67 (320)
T ss_pred CCCEEEEEEEECCCCcEEEEEEecCCcceEEEcC-CCCCcccCCcceECCCCCc------cee------------eCCCE
Confidence 4678999999999999999999999999999999 8974332346799999885 111 13678
Q ss_pred ceeeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCC-CCCCCccEEEecCCCCCCh------hhhhhcccc
Q 015972 144 YELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSSI------VSQLHSQKL 216 (397)
Q Consensus 144 ~~i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~s~------~~ql~~~~~ 216 (397)
|.+.|++| .+.|.+++|+|+|+ +..++++.|||++...+. +.....+||||||++..+. ..+|.++|+
T Consensus 68 ~~~~y~~g-~~~G~~~~D~v~ig----~~~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~~qg~ 142 (320)
T cd05488 68 FKIQYGSG-SLEGFVSQDTLSIG----DLTIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNMINQGL 142 (320)
T ss_pred EEEEECCc-eEEEEEEEeEEEEC----CEEECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHHHhcCC
Confidence 99999999 58999999999995 567789999999876432 3345679999999987543 347888999
Q ss_pred c-ceeeEEeecC--CCceeEEeCCCCC--CCCCcEEeecccCCCCceeEEeeEEEECCeEeecCCCCEEEcCCCcceecC
Q 015972 217 I-RNVVGHCLSG--GGGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLN 291 (397)
Q Consensus 217 i-~~~Fs~~l~~--~~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~g~~~~~~~~~~iiDSGTs~~~lp 291 (397)
| +++||+||.+ ...|.|+||++++ +.+++.|+|+... .+|.|.+++|+|+++.+......++|||||++++||
T Consensus 143 i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~--~~w~v~l~~i~vg~~~~~~~~~~~ivDSGtt~~~lp 220 (320)
T cd05488 143 LDEPVFSFYLGSSEEDGGEATFGGIDESRFTGKITWLPVRRK--AYWEVELEKIGLGDEELELENTGAAIDTGTSLIALP 220 (320)
T ss_pred CCCCEEEEEecCCCCCCcEEEECCcCHHHcCCceEEEeCCcC--cEEEEEeCeEEECCEEeccCCCeEEEcCCcccccCC
Confidence 9 8999999985 3579999999864 5789999999865 699999999999999887777899999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEECCCeeEEEeCCCc
Q 015972 292 RVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKGN 371 (397)
Q Consensus 292 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~yi~~~~~~~ 371 (397)
++++++|.+++.+... . ...+..+|++.. .+|.|+|+|+| ++++|+|++|++.. +.
T Consensus 221 ~~~~~~l~~~~~~~~~------~-~~~~~~~C~~~~-----------~~P~i~f~f~g----~~~~i~~~~y~~~~--~g 276 (320)
T cd05488 221 SDLAEMLNAEIGAKKS------W-NGQYTVDCSKVD-----------SLPDLTFNFDG----YNFTLGPFDYTLEV--SG 276 (320)
T ss_pred HHHHHHHHHHhCCccc------c-CCcEEeeccccc-----------cCCCEEEEECC----EEEEECHHHheecC--CC
Confidence 9999999887743221 1 111223586532 48999999986 99999999999853 35
Q ss_pred EEEEEEeCCc-C-CCCCeeEEccccc
Q 015972 372 VCLGILNGAE-V-GLQDLNVIGGIGD 395 (397)
Q Consensus 372 ~C~~~~~~~~-~-~~~~~~IlGdv~~ 395 (397)
.|+..+.... . ..++.||||+.+.
T Consensus 277 ~C~~~~~~~~~~~~~~~~~ilG~~fl 302 (320)
T cd05488 277 SCISAFTGMDFPEPVGPLAIVGDAFL 302 (320)
T ss_pred eEEEEEEECcCCCCCCCeEEEchHHh
Confidence 7986554322 1 1134799999863
No 11
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=7.1e-46 Score=363.32 Aligned_cols=304 Identities=22% Similarity=0.341 Sum_probs=232.3
Q ss_pred eCCCCcE-EEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCC---------CCCCCCCCCc
Q 015972 74 IGQPARP-YFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGH---------HNCEDPAQCD 143 (397)
Q Consensus 74 iGTP~Q~-~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~---------~~c~~~~~~~ 143 (397)
+|||-.+ +.|++||||+++||+|. +|. ...|. .++|+++.|+..++... ..|.. +.|.
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~-~~~------sst~~----~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~-~~C~ 69 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCD-AGH------SSTYQ----TVPCSSSVCSLANRYHCPGTCGGAPGPGCGN-NTCT 69 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCC-CCC------cCCCC----ccCcCChhhccccccCCCccccCCCCCCCCC-CcCe
Confidence 6888888 99999999999999998 642 12332 48999999987654311 24532 4688
Q ss_pred ceee-eCCCCeEEEEEEEEEEEeeccCCCc----CCCceEEEeeEecCCCCCCCCccEEEecCCCCCChhhhhhcccccc
Q 015972 144 YELE-YADGGSSLGVLVKDAFAFNYTNGQR----LNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIR 218 (397)
Q Consensus 144 ~~i~-Yg~Gs~~~G~~~~D~v~~~~~~g~~----~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~ 218 (397)
|... |++|+.+.|.+++|+|+|+..+|+. .++++.|||+............+||||||++++|++.||..+..++
T Consensus 70 y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~~~~~ 149 (362)
T cd05489 70 AHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASAFGVA 149 (362)
T ss_pred eEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhhcCCC
Confidence 8765 8899999999999999998655443 6789999999875321123458999999999999999998876568
Q ss_pred eeeEEeecC--CCceeEEeCCCCC--------CCCCcEEeecccCCC--CceeEEeeEEEECCeEeecC----------C
Q 015972 219 NVVGHCLSG--GGGGFLFFGDDLY--------DSSRVVWTSMSSDYT--KYYSPGVAELFFGGETTGLK----------N 276 (397)
Q Consensus 219 ~~Fs~~l~~--~~~G~l~fG~~~~--------~~g~~~~~pl~~~~~--~~y~v~l~~i~v~g~~~~~~----------~ 276 (397)
++||+||.+ ..+|+|+||+.+. ..+.++|+||..++. .||.|.+++|+||++.+.+. .
T Consensus 150 ~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~~~~~ 229 (362)
T cd05489 150 RKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSANDRLGP 229 (362)
T ss_pred cceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhccccccCC
Confidence 999999985 3579999998763 137899999998642 79999999999999987642 3
Q ss_pred CCEEEcCCCcceecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEE
Q 015972 277 LPVVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLF 356 (397)
Q Consensus 277 ~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~ 356 (397)
+.+||||||++++||+++|++|.++|.+++...+.... .....+.||+.... ...+....+|.|+|+|+|+ +++|
T Consensus 230 ~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~-~~~~~~~C~~~~~~--~~~~~~~~~P~it~~f~g~--g~~~ 304 (362)
T cd05489 230 GGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPA-AAVFPELCYPASAL--GNTRLGYAVPAIDLVLDGG--GVNW 304 (362)
T ss_pred CcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCC-CCCCcCccccCCCc--CCcccccccceEEEEEeCC--CeEE
Confidence 58999999999999999999999999988764322111 11123689975321 0111124689999999851 3999
Q ss_pred EECCCeeEEEeCCCcEEEEEEeCCcCCCCCeeEEccccc
Q 015972 357 ELTPEAYLIISNKGNVCLGILNGAEVGLQDLNVIGGIGD 395 (397)
Q Consensus 357 ~l~p~~yi~~~~~~~~C~~~~~~~~~~~~~~~IlGdv~~ 395 (397)
+|+|++|+++..++..|++|...+... ...||||++|+
T Consensus 305 ~l~~~ny~~~~~~~~~Cl~f~~~~~~~-~~~~IlG~~~~ 342 (362)
T cd05489 305 TIFGANSMVQVKGGVACLAFVDGGSEP-RPAVVIGGHQM 342 (362)
T ss_pred EEcCCceEEEcCCCcEEEEEeeCCCCC-CceEEEeehee
Confidence 999999999877778999998765321 34899999986
No 12
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=2.9e-46 Score=362.56 Aligned_cols=274 Identities=24% Similarity=0.422 Sum_probs=218.2
Q ss_pred eeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCC----CCCCCCccccccCCCCCCCCCCCCC
Q 015972 66 GYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSND----LVPCEDPICASLHAPGHHNCEDPAQ 141 (397)
Q Consensus 66 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S----~~~C~s~~C~~~~~~~~~~c~~~~~ 141 (397)
++|+++|+||||+|++.|+|||||+++||+|. .|..|..+.++.|+|++| .+.|.+..|.. ...|. ++.
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~C~~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~-----~~~~~-~~~ 74 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCS-QCKNCGIHMEPPYNLNNSITSSILYCDCNKCCY-----CLSCL-NNK 74 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecC-CCCCcCCCCCCCcCcccccccccccCCCccccc-----cCcCC-CCc
Confidence 57999999999999999999999999999999 999999888899999998 38899998843 23453 367
Q ss_pred CcceeeeCCCCeEEEEEEEEEEEeeccCCC---cCCCceEEEeeEecCCCCCCCCccEEEecCCCCCC----hhhhhhcc
Q 015972 142 CDYELEYADGGSSLGVLVKDAFAFNYTNGQ---RLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSS----IVSQLHSQ 214 (397)
Q Consensus 142 ~~~~i~Yg~Gs~~~G~~~~D~v~~~~~~g~---~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s----~~~ql~~~ 214 (397)
|.|.+.|++|+.+.|.+++|+|+|+..... ....++.|||+..+++.+.....+||||||+...+ ...+|.++
T Consensus 75 ~~~~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~ 154 (326)
T cd06096 75 CEYSISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTK 154 (326)
T ss_pred CcEEEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHh
Confidence 999999999988999999999999742110 01235789999887555555678999999998643 22234455
Q ss_pred ccc-c--eeeEEeecCCCceeEEeCCCCC--CC----------CCcEEeecccCCCCceeEEeeEEEECCeE---eecCC
Q 015972 215 KLI-R--NVVGHCLSGGGGGFLFFGDDLY--DS----------SRVVWTSMSSDYTKYYSPGVAELFFGGET---TGLKN 276 (397)
Q Consensus 215 ~~i-~--~~Fs~~l~~~~~G~l~fG~~~~--~~----------g~~~~~pl~~~~~~~y~v~l~~i~v~g~~---~~~~~ 276 (397)
+.+ . ++||+||+++ .|+|+||++++ .. +++.|+|+... .+|.|.+++|+++++. .....
T Consensus 155 ~~~~~~~~~FS~~l~~~-~G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~~~--~~y~v~l~~i~vg~~~~~~~~~~~ 231 (326)
T cd06096 155 RPKLKKDKIFSICLSED-GGELTIGGYDKDYTVRNSSIGNNKVSKIVWTPITRK--YYYYVKLEGLSVYGTTSNSGNTKG 231 (326)
T ss_pred cccccCCceEEEEEcCC-CeEEEECccChhhhcccccccccccCCceEEeccCC--ceEEEEEEEEEEcccccceecccC
Confidence 444 3 8999999864 79999999864 23 78999999876 5999999999999885 22346
Q ss_pred CCEEEcCCCcceecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEE
Q 015972 277 LPVVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLF 356 (397)
Q Consensus 277 ~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~ 356 (397)
..+||||||++++||+++|++|.+++ |+|+|+|++ ++++
T Consensus 232 ~~aivDSGTs~~~lp~~~~~~l~~~~--------------------------------------P~i~~~f~~---g~~~ 270 (326)
T cd06096 232 LGMLVDSGSTLSHFPEDLYNKINNFF--------------------------------------PTITIIFEN---NLKI 270 (326)
T ss_pred CCEEEeCCCCcccCCHHHHHHHHhhc--------------------------------------CcEEEEEcC---CcEE
Confidence 78999999999999999998875433 579999985 4999
Q ss_pred EECCCeeEEEeCCCcEEEEEEeCCcCCCCCeeEEccccc
Q 015972 357 ELTPEAYLIISNKGNVCLGILNGAEVGLQDLNVIGGIGD 395 (397)
Q Consensus 357 ~l~p~~yi~~~~~~~~C~~~~~~~~~~~~~~~IlGdv~~ 395 (397)
+|+|++|++...+..+|+++... .+.+|||+++.
T Consensus 271 ~i~p~~y~~~~~~~~c~~~~~~~-----~~~~ILG~~fl 304 (326)
T cd06096 271 DWKPSSYLYKKESFWCKGGEKSV-----SNKPILGASFF 304 (326)
T ss_pred EECHHHhccccCCceEEEEEecC-----CCceEEChHHh
Confidence 99999999976544455555432 24789999863
No 13
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=2e-45 Score=355.33 Aligned_cols=271 Identities=21% Similarity=0.331 Sum_probs=216.1
Q ss_pred cCCeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCC---CCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCC
Q 015972 63 YPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV---RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDP 139 (397)
Q Consensus 63 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~---~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~ 139 (397)
+.+.+|+++|+||||||++.|+|||||+++||+|. .|. .|. .++.|+|++|+ +|+.
T Consensus 6 ~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~C~~~~~C~--~~~~y~~~~Ss------T~~~------------ 64 (317)
T cd06098 6 YLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSS-KCYFSIACY--FHSKYKSSKSS------TYKK------------ 64 (317)
T ss_pred cCCCEEEEEEEECCCCeEEEEEECCCccceEEecC-CCCCCcccc--ccCcCCcccCC------Cccc------------
Confidence 34789999999999999999999999999999998 896 687 46889999985 1221
Q ss_pred CCCcceeeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCC-CCCCCccEEEecCCCCCC------hhhhhh
Q 015972 140 AQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSS------IVSQLH 212 (397)
Q Consensus 140 ~~~~~~i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~ql~ 212 (397)
....+.+.|++| .+.|.+++|+|+|+ +..++++.||+++..... +.....+||||||+...+ ++.+|+
T Consensus 65 ~~~~~~i~Yg~G-~~~G~~~~D~v~ig----~~~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l~ 139 (317)
T cd06098 65 NGTSASIQYGTG-SISGFFSQDSVTVG----DLVVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWYNMV 139 (317)
T ss_pred CCCEEEEEcCCc-eEEEEEEeeEEEEC----CEEECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHHHHH
Confidence 244789999999 68999999999995 567889999999876332 344578999999987543 567899
Q ss_pred ccccc-ceeeEEeecCC----CceeEEeCCCCC--CCCCcEEeecccCCCCceeEEeeEEEECCeEeec--CCCCEEEcC
Q 015972 213 SQKLI-RNVVGHCLSGG----GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGL--KNLPVVFDS 283 (397)
Q Consensus 213 ~~~~i-~~~Fs~~l~~~----~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~g~~~~~--~~~~~iiDS 283 (397)
++|+| +++||+||.++ ..|+|+||++++ +.|++.|+|+... .||.|.+++|+|+++.+.. ....+||||
T Consensus 140 ~qg~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~l~~~pv~~~--~~w~v~l~~i~v~g~~~~~~~~~~~aivDT 217 (317)
T cd06098 140 EQGLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGEHTYVPVTRK--GYWQFEMGDVLIGGKSTGFCAGGCAAIADS 217 (317)
T ss_pred hcCCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccceEEEecCcC--cEEEEEeCeEEECCEEeeecCCCcEEEEec
Confidence 99999 88999999742 479999999864 5799999999865 6999999999999988654 245799999
Q ss_pred CCcceecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEECCCee
Q 015972 284 GSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAY 363 (397)
Q Consensus 284 GTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~y 363 (397)
||+++++|++++++|. ...+|+... .+|+|+|+|+| +.++|+|++|
T Consensus 218 GTs~~~lP~~~~~~i~-------------------~~~~C~~~~-----------~~P~i~f~f~g----~~~~l~~~~y 263 (317)
T cd06098 218 GTSLLAGPTTIVTQIN-------------------SAVDCNSLS-----------SMPNVSFTIGG----KTFELTPEQY 263 (317)
T ss_pred CCcceeCCHHHHHhhh-------------------ccCCccccc-----------cCCcEEEEECC----EEEEEChHHe
Confidence 9999999998876553 112487642 37999999986 9999999999
Q ss_pred EEEeCC--CcEEEE-EEeCCcC-CCCCeeEEccccc
Q 015972 364 LIISNK--GNVCLG-ILNGAEV-GLQDLNVIGGIGD 395 (397)
Q Consensus 364 i~~~~~--~~~C~~-~~~~~~~-~~~~~~IlGdv~~ 395 (397)
+++..+ ...|++ +...... ..+..||||+++.
T Consensus 264 i~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlGd~Fl 299 (317)
T cd06098 264 ILKVGEGAAAQCISGFTALDVPPPRGPLWILGDVFM 299 (317)
T ss_pred EEeecCCCCCEEeceEEECCCCCCCCCeEEechHHh
Confidence 987643 358984 5433211 1235799999763
No 14
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=1.3e-45 Score=358.24 Aligned_cols=282 Identities=19% Similarity=0.304 Sum_probs=224.3
Q ss_pred cCCeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCC----CCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCC
Q 015972 63 YPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCV----RCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCED 138 (397)
Q Consensus 63 ~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~----~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~ 138 (397)
+.+.+|+++|+||||+|++.|+|||||+++||+|. .|. .|. .++.|+|++|+ +|+.
T Consensus 7 ~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~--~~~~y~~~~Ss------t~~~----------- 66 (329)
T cd05485 7 YMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSK-KCSWTNIACL--LHNKYDSTKSS------TYKK----------- 66 (329)
T ss_pred ccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecC-CCCCCCcccc--CCCeECCcCCC------CeEE-----------
Confidence 34789999999999999999999999999999998 897 454 46789999885 2221
Q ss_pred CCCCcceeeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCC-CCCCCccEEEecCCCCCC------hhhhh
Q 015972 139 PAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKSS------IVSQL 211 (397)
Q Consensus 139 ~~~~~~~i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~s------~~~ql 211 (397)
..|.|.+.|++| .+.|.+++|+|+|+ +..++++.|||+....+. +.....+||||||++..+ ++.+|
T Consensus 67 -~~~~~~i~Y~~g-~~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~~~~l 140 (329)
T cd05485 67 -NGTEFAIQYGSG-SLSGFLSTDTVSVG----GVSVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPVFYNM 140 (329)
T ss_pred -CCeEEEEEECCc-eEEEEEecCcEEEC----CEEECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCHHHHH
Confidence 357999999999 58999999999995 567789999999876332 334568999999998654 46789
Q ss_pred hccccc-ceeeEEeecCC----CceeEEeCCCCC--CCCCcEEeecccCCCCceeEEeeEEEECCeEeecCCCCEEEcCC
Q 015972 212 HSQKLI-RNVVGHCLSGG----GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSG 284 (397)
Q Consensus 212 ~~~~~i-~~~Fs~~l~~~----~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~g~~~~~~~~~~iiDSG 284 (397)
++|++| +++||+||.+. ..|+|+||+.++ +.+++.|+|+... .+|.|.+++++++++.+...+..+|||||
T Consensus 141 ~~qg~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~l~~~p~~~~--~~~~v~~~~i~v~~~~~~~~~~~~iiDSG 218 (329)
T cd05485 141 VNQKLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGNFTYLPVTRK--GYWQFKMDSVSVGEGEFCSGGCQAIADTG 218 (329)
T ss_pred HhCCCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccceEEEEcCCc--eEEEEEeeEEEECCeeecCCCcEEEEccC
Confidence 999999 89999999842 469999999864 5789999999865 69999999999999887655678999999
Q ss_pred CcceecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEECCCeeE
Q 015972 285 SSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYL 364 (397)
Q Consensus 285 Ts~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~yi 364 (397)
|+++++|++++++|.+++.... + . ...+..+|+... .+|+|+|+|+| ++++|+|++|+
T Consensus 219 tt~~~lP~~~~~~l~~~~~~~~----~--~-~~~~~~~C~~~~-----------~~p~i~f~fgg----~~~~i~~~~yi 276 (329)
T cd05485 219 TSLIAGPVDEIEKLNNAIGAKP----I--I-GGEYMVNCSAIP-----------SLPDITFVLGG----KSFSLTGKDYV 276 (329)
T ss_pred CcceeCCHHHHHHHHHHhCCcc----c--c-CCcEEEeccccc-----------cCCcEEEEECC----EEeEEChHHeE
Confidence 9999999999999988875321 1 1 112234686532 37999999986 99999999999
Q ss_pred EEeCC--CcEEEE-EEeCCc-CCCCCeeEEcccc
Q 015972 365 IISNK--GNVCLG-ILNGAE-VGLQDLNVIGGIG 394 (397)
Q Consensus 365 ~~~~~--~~~C~~-~~~~~~-~~~~~~~IlGdv~ 394 (397)
++..+ ...|+. +..... ....+.||||+.+
T Consensus 277 ~~~~~~~~~~C~~~~~~~~~~~~~~~~~IlG~~f 310 (329)
T cd05485 277 LKVTQMGQTICLSGFMGIDIPPPAGPLWILGDVF 310 (329)
T ss_pred EEecCCCCCEEeeeEEECcCCCCCCCeEEEchHH
Confidence 97643 358984 554321 1124579999975
No 15
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=3.7e-45 Score=354.85 Aligned_cols=282 Identities=17% Similarity=0.259 Sum_probs=221.5
Q ss_pred CCeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCC--CCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCC
Q 015972 64 PTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRC--VEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQ 141 (397)
Q Consensus 64 ~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C--~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~ 141 (397)
.+.+|+++|+||||+|+++|+|||||+++||+|. .|..| ....++.|+|++|+ +|+. ..
T Consensus 5 ~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~-~C~~~~~~c~~~~~y~~~~Ss------T~~~------------~~ 65 (326)
T cd05487 5 LDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSS-KCSPLYTACVTHNLYDASDSS------TYKE------------NG 65 (326)
T ss_pred CCCeEEEEEEECCCCcEEEEEEeCCccceEEccC-CCcCcchhhcccCcCCCCCCe------eeeE------------CC
Confidence 4779999999999999999999999999999988 78742 22356899999985 2321 36
Q ss_pred CcceeeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCC-CCCCCCccEEEecCCCCC------Chhhhhhcc
Q 015972 142 CDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVP-GASYHPLDGILGLGKGKS------SIVSQLHSQ 214 (397)
Q Consensus 142 ~~~~i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~-~~~~~~~~GIlGLg~~~~------s~~~ql~~~ 214 (397)
|.|++.|++| .+.|.+++|+|+|+ +..+ ++.||++..... .+.....+||||||++.. +++.+|.+|
T Consensus 66 ~~~~~~Yg~g-~~~G~~~~D~v~~g----~~~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L~~q 139 (326)
T cd05487 66 TEFTIHYASG-TVKGFLSQDIVTVG----GIPV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDNIMSQ 139 (326)
T ss_pred EEEEEEeCCc-eEEEEEeeeEEEEC----CEEe-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHHHHhc
Confidence 7999999999 69999999999996 3444 478999987532 233456899999998754 467789999
Q ss_pred ccc-ceeeEEeecCC----CceeEEeCCCCC--CCCCcEEeecccCCCCceeEEeeEEEECCeEeecC-CCCEEEcCCCc
Q 015972 215 KLI-RNVVGHCLSGG----GGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLK-NLPVVFDSGSS 286 (397)
Q Consensus 215 ~~i-~~~Fs~~l~~~----~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~g~~~~~~-~~~~iiDSGTs 286 (397)
|.| +++||+||.++ ..|+|+||++++ +.+++.|+|+... .+|+|.+++|+++++.+... +..+||||||+
T Consensus 140 g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~l~~~~~~~~--~~w~v~l~~i~vg~~~~~~~~~~~aiiDSGts 217 (326)
T cd05487 140 GVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGDFHYINTSKT--GFWQIQMKGVSVGSSTLLCEDGCTAVVDTGAS 217 (326)
T ss_pred CCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCceEEEECCcC--ceEEEEecEEEECCEEEecCCCCEEEECCCcc
Confidence 999 89999999852 479999999864 5789999998765 69999999999999887543 35799999999
Q ss_pred ceecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEECCCeeEEE
Q 015972 287 YTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLII 366 (397)
Q Consensus 287 ~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~yi~~ 366 (397)
+++||+++++++++++.+... ...+..+|+... .+|+|+|+|++ ..++|++++|++.
T Consensus 218 ~~~lP~~~~~~l~~~~~~~~~--------~~~y~~~C~~~~-----------~~P~i~f~fgg----~~~~v~~~~yi~~ 274 (326)
T cd05487 218 FISGPTSSISKLMEALGAKER--------LGDYVVKCNEVP-----------TLPDISFHLGG----KEYTLSSSDYVLQ 274 (326)
T ss_pred chhCcHHHHHHHHHHhCCccc--------CCCEEEeccccC-----------CCCCEEEEECC----EEEEeCHHHhEEe
Confidence 999999999999888753221 122334687642 37999999976 9999999999997
Q ss_pred eCC--CcEEE-EEEeCCcC-CCCCeeEEccccc
Q 015972 367 SNK--GNVCL-GILNGAEV-GLQDLNVIGGIGD 395 (397)
Q Consensus 367 ~~~--~~~C~-~~~~~~~~-~~~~~~IlGdv~~ 395 (397)
..+ +..|+ ++...... ..++.||||+++.
T Consensus 275 ~~~~~~~~C~~~~~~~~~~~~~~~~~ilG~~fl 307 (326)
T cd05487 275 DSDFSDKLCTVAFHAMDIPPPTGPLWVLGATFI 307 (326)
T ss_pred ccCCCCCEEEEEEEeCCCCCCCCCeEEEehHHh
Confidence 643 46897 55543211 1235799999763
No 16
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=7e-45 Score=363.49 Aligned_cols=287 Identities=18% Similarity=0.229 Sum_probs=222.1
Q ss_pred ceeEeeeecccCCeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCC
Q 015972 53 SLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPG 132 (397)
Q Consensus 53 ~~~~pl~g~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~ 132 (397)
...+||.. +.+.+|+++|+||||||++.|+|||||+++||+|. .|..|..+.++.|||++|+ +|+.
T Consensus 127 ~~~v~L~n--~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~-~C~~~~C~~~~~yd~s~Ss------T~~~----- 192 (453)
T PTZ00147 127 FDNVELKD--LANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSI-KCTTEGCETKNLYDSSKSK------TYEK----- 192 (453)
T ss_pred CCeeeccc--cCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeec-CCCcccccCCCccCCccCc------ceEE-----
Confidence 44577753 34779999999999999999999999999999999 8986555567899999985 2222
Q ss_pred CCCCCCCCCCcceeeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCC---CCCCCccEEEecCCCCCC---
Q 015972 133 HHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG---ASYHPLDGILGLGKGKSS--- 206 (397)
Q Consensus 133 ~~~c~~~~~~~~~i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~---~~~~~~~GIlGLg~~~~s--- 206 (397)
..+.|++.|++| .+.|.+++|+|+|+ +..++ ..|+++.+.... +.....|||||||++..+
T Consensus 193 -------~~~~f~i~Yg~G-svsG~~~~DtVtiG----~~~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~ 259 (453)
T PTZ00147 193 -------DGTKVEMNYVSG-TVSGFFSKDLVTIG----NLSVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGS 259 (453)
T ss_pred -------CCCEEEEEeCCC-CEEEEEEEEEEEEC----CEEEE-EEEEEEEeccCcccccccccccceecccCCcccccc
Confidence 356899999999 69999999999995 45555 579988765321 233468999999998654
Q ss_pred ---hhhhhhccccc-ceeeEEeecC--CCceeEEeCCCCC--CCCCcEEeecccCCCCceeEEeeEEEECCeEeecCCCC
Q 015972 207 ---IVSQLHSQKLI-RNVVGHCLSG--GGGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLP 278 (397)
Q Consensus 207 ---~~~ql~~~~~i-~~~Fs~~l~~--~~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~g~~~~~~~~~ 278 (397)
++.+|++|++| +++||+||++ ...|.|+|||++. +.|++.|+|+... .||+|.++ +.+++.. .....
T Consensus 260 ~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~l~y~pl~~~--~~W~V~l~-~~vg~~~--~~~~~ 334 (453)
T PTZ00147 260 VDPYVVELKNQNKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGPLTYEKLNHD--LYWQVDLD-VHFGNVS--SEKAN 334 (453)
T ss_pred CCCHHHHHHHcCCCCccEEEEEecCCCCCCeEEEECCcChhhcCCceEEEEcCCC--ceEEEEEE-EEECCEe--cCcee
Confidence 56789999999 8899999985 3579999999974 5799999999754 69999998 5777654 24578
Q ss_pred EEEcCCCcceecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEE
Q 015972 279 VVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFEL 358 (397)
Q Consensus 279 ~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l 358 (397)
+||||||+++++|+++++++.+++.+... .. ......+|+.. .+|+|+|+|+| .+++|
T Consensus 335 aIiDSGTsli~lP~~~~~ai~~~l~~~~~----~~--~~~y~~~C~~~------------~lP~~~f~f~g----~~~~L 392 (453)
T PTZ00147 335 VIVDSGTSVITVPTEFLNKFVESLDVFKV----PF--LPLYVTTCNNT------------KLPTLEFRSPN----KVYTL 392 (453)
T ss_pred EEECCCCchhcCCHHHHHHHHHHhCCeec----CC--CCeEEEeCCCC------------CCCeEEEEECC----EEEEE
Confidence 99999999999999999999888743211 11 11233468752 37999999987 89999
Q ss_pred CCCeeEEEeCC--CcEEE-EEEeCCcCCCCCeeEEccccc
Q 015972 359 TPEAYLIISNK--GNVCL-GILNGAEVGLQDLNVIGGIGD 395 (397)
Q Consensus 359 ~p~~yi~~~~~--~~~C~-~~~~~~~~~~~~~~IlGdv~~ 395 (397)
+|++|+....+ ...|+ ++...+. ..+.|||||++.
T Consensus 393 ~p~~yi~~~~~~~~~~C~~~i~~~~~--~~~~~ILGd~FL 430 (453)
T PTZ00147 393 EPEYYLQPIEDIGSALCMLNIIPIDL--EKNTFILGDPFM 430 (453)
T ss_pred CHHHheeccccCCCcEEEEEEEECCC--CCCCEEECHHHh
Confidence 99999976432 35798 4655432 134799999763
No 17
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=7.7e-44 Score=355.32 Aligned_cols=287 Identities=18% Similarity=0.234 Sum_probs=218.5
Q ss_pred ceeEeeeecccCCeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCC
Q 015972 53 SLLFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPG 132 (397)
Q Consensus 53 ~~~~pl~g~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~ 132 (397)
...+||. .+.+.+|+++|+||||+|++.|+|||||+++||+|. .|..+.++.++.|+|++|+ +|+
T Consensus 126 ~~~~~l~--d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~-~C~~~~C~~~~~yd~s~Ss------T~~------ 190 (450)
T PTZ00013 126 NDVIELD--DVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSK-KCDSIGCSIKNLYDSSKSK------SYE------ 190 (450)
T ss_pred CCceeee--ccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecc-cCCccccccCCCccCccCc------ccc------
Confidence 3346665 234679999999999999999999999999999999 8974333356899999884 111
Q ss_pred CCCCCCCCCCcceeeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCC---CCCCCccEEEecCCCCC----
Q 015972 133 HHNCEDPAQCDYELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG---ASYHPLDGILGLGKGKS---- 205 (397)
Q Consensus 133 ~~~c~~~~~~~~~i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~---~~~~~~~GIlGLg~~~~---- 205 (397)
...|.|++.|++| .+.|.+++|+|+|+ +..++ ..|+++...... +.....+||||||++..
T Consensus 191 ------~~~~~~~i~YG~G-sv~G~~~~Dtv~iG----~~~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ 258 (450)
T PTZ00013 191 ------KDGTKVDITYGSG-TVKGFFSKDLVTLG----HLSMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGS 258 (450)
T ss_pred ------cCCcEEEEEECCc-eEEEEEEEEEEEEC----CEEEc-cEEEEEEeccccccceecccccceecccCCcccccc
Confidence 1357899999999 59999999999995 44554 588888765321 23346899999999764
Q ss_pred --Chhhhhhccccc-ceeeEEeecC--CCceeEEeCCCCC--CCCCcEEeecccCCCCceeEEeeEEEECCeEeecCCCC
Q 015972 206 --SIVSQLHSQKLI-RNVVGHCLSG--GGGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLKNLP 278 (397)
Q Consensus 206 --s~~~ql~~~~~i-~~~Fs~~l~~--~~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~g~~~~~~~~~ 278 (397)
+++.+|++|++| +++||+||++ ...|.|+|||+++ +.|++.|+|+... .||+|.++ +.++.... ....
T Consensus 259 ~~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~L~y~pv~~~--~yW~I~l~-v~~G~~~~--~~~~ 333 (450)
T PTZ00013 259 IDPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGNITYEKLNHD--LYWQIDLD-VHFGKQTM--QKAN 333 (450)
T ss_pred CCCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccceEEEEcCcC--ceEEEEEE-EEECceec--cccc
Confidence 467899999999 8899999984 3579999999974 5799999999765 69999998 67765443 3578
Q ss_pred EEEcCCCcceecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEE
Q 015972 279 VVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFEL 358 (397)
Q Consensus 279 ~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l 358 (397)
+||||||+++++|+++++++.+++..... .. ...+..+|+.. .+|+|+|+|+| .+++|
T Consensus 334 aIlDSGTSli~lP~~~~~~i~~~l~~~~~----~~--~~~y~~~C~~~------------~lP~i~F~~~g----~~~~L 391 (450)
T PTZ00013 334 VIVDSGTTTITAPSEFLNKFFANLNVIKV----PF--LPFYVTTCDNK------------EMPTLEFKSAN----NTYTL 391 (450)
T ss_pred eEECCCCccccCCHHHHHHHHHHhCCeec----CC--CCeEEeecCCC------------CCCeEEEEECC----EEEEE
Confidence 99999999999999999988887743211 01 11233468642 37999999987 89999
Q ss_pred CCCeeEEEe--CCCcEEE-EEEeCCcCCCCCeeEEccccc
Q 015972 359 TPEAYLIIS--NKGNVCL-GILNGAEVGLQDLNVIGGIGD 395 (397)
Q Consensus 359 ~p~~yi~~~--~~~~~C~-~~~~~~~~~~~~~~IlGdv~~ 395 (397)
+|++|+... .++..|+ ++.+... ..+.|||||++.
T Consensus 392 ~p~~Yi~~~~~~~~~~C~~~i~~~~~--~~~~~ILGd~FL 429 (450)
T PTZ00013 392 EPEYYMNPLLDVDDTLCMITMLPVDI--DDNTFILGDPFM 429 (450)
T ss_pred CHHHheehhccCCCCeeEEEEEECCC--CCCCEEECHHHh
Confidence 999999753 2346897 5554332 234799999863
No 18
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2e-43 Score=347.70 Aligned_cols=292 Identities=18% Similarity=0.215 Sum_probs=212.7
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCccee
Q 015972 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 146 (397)
Q Consensus 67 ~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~~~~~i 146 (397)
.|+++|.||||+|++.|+|||||+++||+|. .|.. .++.|+|++|+ +|+ ...|.|++
T Consensus 3 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~-~~~~----~~~~f~~~~Ss------T~~------------~~~~~~~i 59 (364)
T cd05473 3 GYYIEMLIGTPPQKLNILVDTGSSNFAVAAA-PHPF----IHTYFHRELSS------TYR------------DLGKGVTV 59 (364)
T ss_pred ceEEEEEecCCCceEEEEEecCCcceEEEcC-CCcc----ccccCCchhCc------Ccc------------cCCceEEE
Confidence 6999999999999999999999999999998 7743 35789999985 222 13679999
Q ss_pred eeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCCCC-CCCccEEEecCCCCC--------Chhhhhhccccc
Q 015972 147 EYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGAS-YHPLDGILGLGKGKS--------SIVSQLHSQKLI 217 (397)
Q Consensus 147 ~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~-~~~~~GIlGLg~~~~--------s~~~ql~~~~~i 217 (397)
.|++| .+.|.+++|+|+|+.. ......+.|++++.....+. ....+||||||++.+ +++.+|.+|+.+
T Consensus 60 ~Yg~G-s~~G~~~~D~v~ig~~--~~~~~~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q~~~ 136 (364)
T cd05473 60 PYTQG-SWEGELGTDLVSIPKG--PNVTFRANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQTGI 136 (364)
T ss_pred EECcc-eEEEEEEEEEEEECCC--CccceEEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhccCC
Confidence 99999 6899999999999631 11111233556654432221 235799999998754 466788888888
Q ss_pred ceeeEEeecC-----------CCceeEEeCCCCC--CCCCcEEeecccCCCCceeEEeeEEEECCeEeecC-----CCCE
Q 015972 218 RNVVGHCLSG-----------GGGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGETTGLK-----NLPV 279 (397)
Q Consensus 218 ~~~Fs~~l~~-----------~~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~g~~~~~~-----~~~~ 279 (397)
+++||+||.. ...|+|+||++++ +.+++.|+|+... .+|.|.+++|+|+++.+... ...+
T Consensus 137 ~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~l~~~p~~~~--~~~~v~l~~i~vg~~~~~~~~~~~~~~~~ 214 (364)
T cd05473 137 PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGDIWYTPIREE--WYYEVIILKLEVGGQSLNLDCKEYNYDKA 214 (364)
T ss_pred ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCCceEEecCcc--eeEEEEEEEEEECCEecccccccccCccE
Confidence 7899998731 2379999999864 5789999999875 69999999999999887643 1469
Q ss_pred EEcCCCcceecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCC--CCeEEE
Q 015972 280 VFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGK--TRTLFE 357 (397)
Q Consensus 280 iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~--~~~~~~ 357 (397)
||||||++++||+++|++|.+++.++.................|++... .....+|+|+|+|+|.. ...+++
T Consensus 215 ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~------~~~~~~P~i~~~f~g~~~~~~~~l~ 288 (364)
T cd05473 215 IVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGT------TPWEIFPKISIYLRDENSSQSFRIT 288 (364)
T ss_pred EEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccC------chHhhCCcEEEEEccCCCCceEEEE
Confidence 9999999999999999999999988754211111000111246986431 01135899999998631 135789
Q ss_pred ECCCeeEEEeC---CCcEEEEEEeCCcCCCCCeeEEccccc
Q 015972 358 LTPEAYLIISN---KGNVCLGILNGAEVGLQDLNVIGGIGD 395 (397)
Q Consensus 358 l~p~~yi~~~~---~~~~C~~~~~~~~~~~~~~~IlGdv~~ 395 (397)
|+|++|+.... .+..|+++..... .+.||||+++.
T Consensus 289 l~p~~Y~~~~~~~~~~~~C~~~~~~~~---~~~~ILG~~fl 326 (364)
T cd05473 289 ILPQLYLRPVEDHGTQLDCYKFAISQS---TNGTVIGAVIM 326 (364)
T ss_pred ECHHHhhhhhccCCCcceeeEEeeecC---CCceEEeeeeE
Confidence 99999998642 2458986543221 24689999874
No 19
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=1.1e-41 Score=321.22 Aligned_cols=225 Identities=40% Similarity=0.706 Sum_probs=193.8
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCccee
Q 015972 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 146 (397)
Q Consensus 67 ~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~~~~~i 146 (397)
+|+++|+||||||++.|+|||||+++||+| |.|.+
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~---------------------------------------------~~~~~ 35 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC---------------------------------------------CSYEY 35 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC---------------------------------------------CceEe
Confidence 599999999999999999999999999975 15678
Q ss_pred eeCCCCeEEEEEEEEEEEeeccCCCc--CCCceEEEeeEecCCCCCCCCccEEEecCCCCCChhhhhhcccccceeeEEe
Q 015972 147 EYADGGSSLGVLVKDAFAFNYTNGQR--LNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVGHC 224 (397)
Q Consensus 147 ~Yg~Gs~~~G~~~~D~v~~~~~~g~~--~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs~~ 224 (397)
+|++|+.+.|.+++|+|+|+ +. .++++.|||+...+. +.....+||||||+...|++.||..++ ++||+|
T Consensus 36 ~Y~dg~~~~G~~~~D~v~~g----~~~~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~---~~Fs~~ 107 (265)
T cd05476 36 SYGDGSSTSGVLATETFTFG----DSSVSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG---NKFSYC 107 (265)
T ss_pred EeCCCceeeeeEEEEEEEec----CCCCccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc---CeeEEE
Confidence 99999899999999999996 34 678999999998754 456679999999999999999999887 899999
Q ss_pred ecC----CCceeEEeCCCCC-CCCCcEEeecccCC--CCceeEEeeEEEECCeEeec----------CCCCEEEcCCCcc
Q 015972 225 LSG----GGGGFLFFGDDLY-DSSRVVWTSMSSDY--TKYYSPGVAELFFGGETTGL----------KNLPVVFDSGSSY 287 (397)
Q Consensus 225 l~~----~~~G~l~fG~~~~-~~g~~~~~pl~~~~--~~~y~v~l~~i~v~g~~~~~----------~~~~~iiDSGTs~ 287 (397)
|.+ ...|+|+||+++. +.+++.|+|+..++ ..+|.|.+++|+|+++.+.+ ....+||||||++
T Consensus 108 l~~~~~~~~~G~l~fGg~d~~~~~~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~ 187 (265)
T cd05476 108 LVPHDDTGGSSPLILGDAADLGGSGVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTL 187 (265)
T ss_pred ccCCCCCCCCCeEEECCcccccCCCceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcc
Confidence 985 4589999999865 57899999999862 27999999999999998742 3478999999999
Q ss_pred eecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEECCCeeEEEe
Q 015972 288 TYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIIS 367 (397)
Q Consensus 288 ~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~yi~~~ 367 (397)
++||+++| |+|+|+|++ ++++.|++++|++..
T Consensus 188 ~~lp~~~~---------------------------------------------P~i~~~f~~---~~~~~i~~~~y~~~~ 219 (265)
T cd05476 188 TYLPDPAY---------------------------------------------PDLTLHFDG---GADLELPPENYFVDV 219 (265)
T ss_pred eEcCcccc---------------------------------------------CCEEEEECC---CCEEEeCcccEEEEC
Confidence 99999876 468999995 499999999999976
Q ss_pred CCCcEEEEEEeCCcCCCCCeeEEccccc
Q 015972 368 NKGNVCLGILNGAEVGLQDLNVIGGIGD 395 (397)
Q Consensus 368 ~~~~~C~~~~~~~~~~~~~~~IlGdv~~ 395 (397)
.++..|+++.... ..+.||||+++.
T Consensus 220 ~~~~~C~~~~~~~---~~~~~ilG~~fl 244 (265)
T cd05476 220 GEGVVCLAILSSS---SGGVSILGNIQQ 244 (265)
T ss_pred CCCCEEEEEecCC---CCCcEEEChhhc
Confidence 6678999988764 245799999863
No 20
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=8.6e-42 Score=324.08 Aligned_cols=212 Identities=21% Similarity=0.315 Sum_probs=178.8
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcceee
Q 015972 68 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELE 147 (397)
Q Consensus 68 Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~~~~~i~ 147 (397)
|+++|+||||||++.|+|||||+++||+|. .|..|..+.++.|+|++|+ +|+. ...|.|.+.
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~-~c~~~~~~~~~~y~~~~Ss------t~~~-----------~~~~~~~i~ 62 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSS-ETPAAQQGGHKLYDPSKSS------TAKL-----------LPGATWSIS 62 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeC-CCCchhhccCCcCCCccCc------ccee-----------cCCcEEEEE
Confidence 789999999999999999999999999999 9999987778889999884 1211 135689999
Q ss_pred eCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCC-CCCCCccEEEecCCCCC---------Chhhhhhccccc
Q 015972 148 YADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKGKS---------SIVSQLHSQKLI 217 (397)
Q Consensus 148 Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~~~---------s~~~ql~~~~~i 217 (397)
|++|+.+.|.+++|+|+|+ +..++++.||+++..... +.....+||||||+... ++..+|.+++.
T Consensus 63 Y~~G~~~~G~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~~- 137 (278)
T cd06097 63 YGDGSSASGIVYTDTVSIG----GVEVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSLD- 137 (278)
T ss_pred eCCCCeEEEEEEEEEEEEC----CEEECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhcc-
Confidence 9999889999999999995 567889999999986442 34467999999998754 34566777754
Q ss_pred ceeeEEeecCCCceeEEeCCCCC--CCCCcEEeecccCCCCceeEEeeEEEECCeE-eecCCCCEEEcCCCcceecCHHH
Q 015972 218 RNVVGHCLSGGGGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGET-TGLKNLPVVFDSGSSYTYLNRVT 294 (397)
Q Consensus 218 ~~~Fs~~l~~~~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~g~~-~~~~~~~~iiDSGTs~~~lp~~~ 294 (397)
+++||+||.++..|+|+|||+++ +.|++.|+|+.... .+|.|.+++|+|+++. .......+||||||+++++|+++
T Consensus 138 ~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~l~~~pi~~~~-~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~~ 216 (278)
T cd06097 138 APLFTADLRKAAPGFYTFGYIDESKYKGEISWTPVDNSS-GFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDAI 216 (278)
T ss_pred CceEEEEecCCCCcEEEEeccChHHcCCceEEEEccCCC-cEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHHH
Confidence 78999999976789999999874 67999999998743 6999999999999973 33346789999999999999999
Q ss_pred HHHHHHHHH
Q 015972 295 YQTLTSIMK 303 (397)
Q Consensus 295 ~~~l~~~i~ 303 (397)
+++|.+++.
T Consensus 217 ~~~l~~~l~ 225 (278)
T cd06097 217 VEAYYSQVP 225 (278)
T ss_pred HHHHHHhCc
Confidence 999988874
No 21
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=8.5e-41 Score=319.72 Aligned_cols=246 Identities=23% Similarity=0.368 Sum_probs=203.7
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCccee
Q 015972 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 146 (397)
Q Consensus 67 ~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~~~~~i 146 (397)
.|+++|.||||+|++.|+|||||+++||+ .|++
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~-----------------------------------------------~~~~ 34 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP-----------------------------------------------DFSI 34 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee-----------------------------------------------eeEE
Confidence 69999999999999999999999999997 2468
Q ss_pred eeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCCCCCCCccEEEecCCCCC-----------Chhhhhhccc
Q 015972 147 EYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGKS-----------SIVSQLHSQK 215 (397)
Q Consensus 147 ~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~-----------s~~~ql~~~~ 215 (397)
.|++|+.+.|.+++|+|+|+ +..++++.|||+++. ...+||||||+... +++.||.+++
T Consensus 35 ~Y~~g~~~~G~~~~D~v~~g----~~~~~~~~fg~~~~~------~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~g 104 (295)
T cd05474 35 SYGDGTSASGTWGTDTVSIG----GATVKNLQFAVANST------SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQG 104 (295)
T ss_pred EeccCCcEEEEEEEEEEEEC----CeEecceEEEEEecC------CCCcceeeECCCCCcccccCCCcCCCHHHHHHHCC
Confidence 89998899999999999996 456789999999874 24799999999875 6899999999
Q ss_pred cc-ceeeEEeecC--CCceeEEeCCCCC--CCCCcEEeecccCCC----CceeEEeeEEEECCeEee----cCCCCEEEc
Q 015972 216 LI-RNVVGHCLSG--GGGGFLFFGDDLY--DSSRVVWTSMSSDYT----KYYSPGVAELFFGGETTG----LKNLPVVFD 282 (397)
Q Consensus 216 ~i-~~~Fs~~l~~--~~~G~l~fG~~~~--~~g~~~~~pl~~~~~----~~y~v~l~~i~v~g~~~~----~~~~~~iiD 282 (397)
+| +++||+||.+ ...|.|+||+++. +.+++.|+|+..... .+|.|.+++|+++++.+. .....+|||
T Consensus 105 ~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~iiD 184 (295)
T cd05474 105 LIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGDLVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPALLD 184 (295)
T ss_pred cccceEEEEEeCCCCCCceeEEEeeeccceeeceeEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEEEC
Confidence 99 8999999996 3689999999864 568999999998742 689999999999998753 345789999
Q ss_pred CCCcceecCHHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEECCCe
Q 015972 283 SGSSYTYLNRVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEA 362 (397)
Q Consensus 283 SGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~ 362 (397)
|||++++||++++++|.+++.+..... ......+|+... . |+|+|+|+| ++++|++++
T Consensus 185 SGt~~~~lP~~~~~~l~~~~~~~~~~~------~~~~~~~C~~~~-----------~-p~i~f~f~g----~~~~i~~~~ 242 (295)
T cd05474 185 SGTTLTYLPSDIVDAIAKQLGATYDSD------EGLYVVDCDAKD-----------D-GSLTFNFGG----ATISVPLSD 242 (295)
T ss_pred CCCccEeCCHHHHHHHHHHhCCEEcCC------CcEEEEeCCCCC-----------C-CEEEEEECC----eEEEEEHHH
Confidence 999999999999999999987654311 122345687632 2 999999987 999999999
Q ss_pred eEEEeCC----CcEEE-EEEeCCcCCCCCeeEEccccc
Q 015972 363 YLIISNK----GNVCL-GILNGAEVGLQDLNVIGGIGD 395 (397)
Q Consensus 363 yi~~~~~----~~~C~-~~~~~~~~~~~~~~IlGdv~~ 395 (397)
|++.... +..|+ ++..... +.||||+.+.
T Consensus 243 ~~~~~~~~~~~~~~C~~~i~~~~~----~~~iLG~~fl 276 (295)
T cd05474 243 LVLPASTDDGGDGACYLGIQPSTS----DYNILGDTFL 276 (295)
T ss_pred hEeccccCCCCCCCeEEEEEeCCC----CcEEeChHHh
Confidence 9987642 56785 6765442 4799999763
No 22
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=7.1e-40 Score=315.94 Aligned_cols=279 Identities=26% Similarity=0.429 Sum_probs=219.0
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCC-CCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcce
Q 015972 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRC-VEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 145 (397)
Q Consensus 67 ~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C-~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~~~~~ 145 (397)
+|+++|.||||+|++.|++||||+++||++. .|..| .......|++.+|+ +|.. ..+.+.
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~-~c~~~~~~~~~~~y~~~~S~------t~~~------------~~~~~~ 61 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSS-NCNSCSSCASSGFYNPSKSS------TFSN------------QGKPFS 61 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBT-TECSHTHHCTSC-BBGGGST------TEEE------------EEEEEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeecee-cccccccccccccccccccc------cccc------------ceeeee
Confidence 5999999999999999999999999999998 88876 33356789998774 2221 245789
Q ss_pred eeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCC-CCCCCccEEEecCCC-------CCChhhhhhccccc
Q 015972 146 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGLGKG-------KSSIVSQLHSQKLI 217 (397)
Q Consensus 146 i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGLg~~-------~~s~~~ql~~~~~i 217 (397)
+.|++|+ ++|.+++|+|+|+ +..+.++.||++...... +.....+||||||+. ..+++.+|.++|+|
T Consensus 62 ~~y~~g~-~~G~~~~D~v~ig----~~~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g~i 136 (317)
T PF00026_consen 62 ISYGDGS-VSGNLVSDTVSIG----GLTIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQGLI 136 (317)
T ss_dssp EEETTEE-EEEEEEEEEEEET----TEEEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTTSS
T ss_pred eeccCcc-cccccccceEeee----eccccccceeccccccccccccccccccccccCCcccccccCCcceecchhhccc
Confidence 9999995 9999999999995 567788999999985222 234568999999974 35788999999999
Q ss_pred -ceeeEEeecCCC--ceeEEeCCCCC--CCCCcEEeecccCCCCceeEEeeEEEECCe-EeecCCCCEEEcCCCcceecC
Q 015972 218 -RNVVGHCLSGGG--GGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGE-TTGLKNLPVVFDSGSSYTYLN 291 (397)
Q Consensus 218 -~~~Fs~~l~~~~--~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~g~-~~~~~~~~~iiDSGTs~~~lp 291 (397)
+++||++|.+.. .|.|+||+++. +.++++|+|+... .+|.|.+.+|.+++. ........++|||||++++||
T Consensus 137 ~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~~~~~~~~~~--~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i~lp 214 (317)
T PF00026_consen 137 SSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGDLVWVPLVSS--GYWSVPLDSISIGGESVFSSSGQQAILDTGTSYIYLP 214 (317)
T ss_dssp SSSEEEEEEESTTSSEEEEEESSEEGGGEESEEEEEEBSST--TTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSEEEE
T ss_pred cccccceeeeecccccchheeeccccccccCceeccCcccc--cccccccccccccccccccccceeeeccccccccccc
Confidence 999999999653 79999999864 4789999999955 699999999999998 333344679999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCccCCCCCCCCcccccccCCcccccccccccEEEEEEecCCCCeEEEECCCeeEEEeCCC-
Q 015972 292 RVTYQTLTSIMKKELSAKSLKEAPEDETLPLCWKGRRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKG- 370 (397)
Q Consensus 292 ~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~yi~~~~~~- 370 (397)
.+++++|++++...... .....+|... ..+|.|+|.|++ .+++|+|++|+++....
T Consensus 215 ~~~~~~i~~~l~~~~~~--------~~~~~~c~~~-----------~~~p~l~f~~~~----~~~~i~~~~~~~~~~~~~ 271 (317)
T PF00026_consen 215 RSIFDAIIKALGGSYSD--------GVYSVPCNST-----------DSLPDLTFTFGG----VTFTIPPSDYIFKIEDGN 271 (317)
T ss_dssp HHHHHHHHHHHTTEEEC--------SEEEEETTGG-----------GGSEEEEEEETT----EEEEEEHHHHEEEESSTT
T ss_pred chhhHHHHhhhcccccc--------eeEEEecccc-----------cccceEEEeeCC----EEEEecchHhcccccccc
Confidence 99999999998755431 1123357553 248999999997 99999999999987543
Q ss_pred -cEEEE-EEeCCcCCCCCeeEEcccc
Q 015972 371 -NVCLG-ILNGAEVGLQDLNVIGGIG 394 (397)
Q Consensus 371 -~~C~~-~~~~~~~~~~~~~IlGdv~ 394 (397)
..|+. +.........+.+|||..+
T Consensus 272 ~~~C~~~i~~~~~~~~~~~~iLG~~f 297 (317)
T PF00026_consen 272 GGYCYLGIQPMDSSDDSDDWILGSPF 297 (317)
T ss_dssp SSEEEESEEEESSTTSSSEEEEEHHH
T ss_pred cceeEeeeecccccccCCceEecHHH
Confidence 38974 4441111235689999754
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=3.1e-38 Score=299.42 Aligned_cols=216 Identities=29% Similarity=0.488 Sum_probs=183.4
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCC--CCCCCCCCCCCCccccccCCCCCCCCCCCCCCcce
Q 015972 68 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPL--YRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYE 145 (397)
Q Consensus 68 Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~--f~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~~~~~ 145 (397)
|+++|.||||+|++.|+|||||+++||+|. .|..|..+.... |++..|. .| ....|.|+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~-~c~~~~~~~~~~~~~~~~~s~-----------------~~-~~~~~~~~ 61 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSS-NCTSCSCQKHPRFKYDSSKSS-----------------TY-KDTGCTFS 61 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecC-CCCccccccCCCCccCccCCc-----------------ee-ecCCCEEE
Confidence 789999999999999999999999999999 898887654444 4554431 11 23578999
Q ss_pred eeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCCCCCCCccEEEecCCCC------CChhhhhhccccc-c
Q 015972 146 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGKGK------SSIVSQLHSQKLI-R 218 (397)
Q Consensus 146 i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~------~s~~~ql~~~~~i-~ 218 (397)
+.|++| .+.|.+++|+|+|+ +..++++.|||++...........+||||||+.. .+++.||.++++| +
T Consensus 62 ~~Y~~g-~~~g~~~~D~v~~~----~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i~~ 136 (283)
T cd05471 62 ITYGDG-SVTGGLGTDTVTIG----GLTIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLISS 136 (283)
T ss_pred EEECCC-eEEEEEEEeEEEEC----CEEEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCCCC
Confidence 999998 89999999999996 4457899999999875444556799999999988 7899999999998 9
Q ss_pred eeeEEeecC----CCceeEEeCCCCC--CCCCcEEeecccCCCCceeEEeeEEEECCe--EeecCCCCEEEcCCCcceec
Q 015972 219 NVVGHCLSG----GGGGFLFFGDDLY--DSSRVVWTSMSSDYTKYYSPGVAELFFGGE--TTGLKNLPVVFDSGSSYTYL 290 (397)
Q Consensus 219 ~~Fs~~l~~----~~~G~l~fG~~~~--~~g~~~~~pl~~~~~~~y~v~l~~i~v~g~--~~~~~~~~~iiDSGTs~~~l 290 (397)
++||+||.+ ...|.|+||++++ ..+++.|+|+......+|.|.+++|.+++. ........++|||||++++|
T Consensus 137 ~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~l 216 (283)
T cd05471 137 PVFSFYLGRDGDGGNGGELTFGGIDPSKYTGDLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYL 216 (283)
T ss_pred CEEEEEEcCCCCCCCCCEEEEcccCccccCCceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeC
Confidence 999999996 3789999999875 478999999998622799999999999997 44445689999999999999
Q ss_pred CHHHHHHHHHHHHHHhc
Q 015972 291 NRVTYQTLTSIMKKELS 307 (397)
Q Consensus 291 p~~~~~~l~~~i~~~~~ 307 (397)
|++++++|.+++.+...
T Consensus 217 p~~~~~~l~~~~~~~~~ 233 (283)
T cd05471 217 PSSVYDAILKALGAAVS 233 (283)
T ss_pred CHHHHHHHHHHhCCccc
Confidence 99999999999976654
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=8.5e-30 Score=222.59 Aligned_cols=156 Identities=41% Similarity=0.743 Sum_probs=123.6
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCC----CCCCCCccccccCCCCCCCCCCCCCCc
Q 015972 68 YNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSND----LVPCEDPICASLHAPGHHNCEDPAQCD 143 (397)
Q Consensus 68 Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S----~~~C~s~~C~~~~~~~~~~c~~~~~~~ 143 (397)
|+++|+||||+|++.|++||||+++|++|. .+.|+|++| .++|+++.|...+......|..+..|.
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C~----------~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C~ 70 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQCP----------DPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSCP 70 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET--------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcCC----------CcccCCccCCcccccCCCCcchhhcccccccCCCCcCccc
Confidence 899999999999999999999999999883 588999998 499999999987642112333457899
Q ss_pred ceeeeCCCCeEEEEEEEEEEEeeccCCC-cCCCceEEEeeEecCCCCCCCCccEEEecCCCCCChhhhhhcccccceeeE
Q 015972 144 YELEYADGGSSLGVLVKDAFAFNYTNGQ-RLNPRLALGCGYNQVPGASYHPLDGILGLGKGKSSIVSQLHSQKLIRNVVG 222 (397)
Q Consensus 144 ~~i~Yg~Gs~~~G~~~~D~v~~~~~~g~-~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~~~~s~~~ql~~~~~i~~~Fs 222 (397)
|.+.|++++.+.|.+++|+|+++..++. ..+.++.|||+....+.+ ...+||||||++++||+.||.++ ..++||
T Consensus 71 y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~--~~~~GilGLg~~~~Sl~sQl~~~--~~~~FS 146 (164)
T PF14543_consen 71 YSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF--YGADGILGLGRGPLSLPSQLASS--SGNKFS 146 (164)
T ss_dssp EEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS--TTEEEEEE-SSSTTSHHHHHHHH----SEEE
T ss_pred ceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC--cCCCcccccCCCcccHHHHHHHh--cCCeEE
Confidence 9999999999999999999999875422 456789999999986443 38999999999999999999887 678999
Q ss_pred EeecC---CCceeEEeCC
Q 015972 223 HCLSG---GGGGFLFFGD 237 (397)
Q Consensus 223 ~~l~~---~~~G~l~fG~ 237 (397)
|||.+ +..|.|+||+
T Consensus 147 yCL~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 147 YCLPSSSPSSSGFLSFGD 164 (164)
T ss_dssp EEB-S-SSSSEEEEEECS
T ss_pred EECCCCCCCCCEEEEeCc
Confidence 99986 5789999996
No 25
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.89 E-value=1.1e-22 Score=165.62 Aligned_cols=107 Identities=28% Similarity=0.462 Sum_probs=88.7
Q ss_pred EEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCC-CCCCCCCCCCCccccccCCCCCCCCCCCCCCcceeee
Q 015972 70 VTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLY-RPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEY 148 (397)
Q Consensus 70 ~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f-~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~~~~~i~Y 148 (397)
++|.||||||++.|+|||||+++||+|. .|..|..+.++.| +|++|+ +.....|.|.+.|
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~-~c~~~~~~~~~~~~~~~~ss------------------t~~~~~~~~~~~Y 61 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSV-DCQSLAIYSHSSYDDPSASS------------------TYSDNGCTFSITY 61 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCC-CCCCcccccccccCCcCCCC------------------CCCCCCcEEEEEe
Confidence 4799999999999999999999999999 8988876666667 887773 1122468999999
Q ss_pred CCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCC-CCCCCccEEEec
Q 015972 149 ADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPG-ASYHPLDGILGL 200 (397)
Q Consensus 149 g~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~-~~~~~~~GIlGL 200 (397)
++| .+.|.+++|+|+|+ ...++++.|||++..... +.....+|||||
T Consensus 62 ~~g-~~~g~~~~D~v~ig----~~~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 62 GTG-SLSGGLSTDTVSIG----DIEVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred CCC-eEEEEEEEEEEEEC----CEEECCEEEEEEEecCCccccccccccccCC
Confidence 999 68899999999995 456889999999987544 334578999998
No 26
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.78 E-value=8.8e-19 Score=152.72 Aligned_cols=133 Identities=24% Similarity=0.437 Sum_probs=96.4
Q ss_pred ceeEEeeEEEECCeEeecC---------CCCEEEcCCCcceecCHHHHHHHHHHHHHHhccCCCcc-CCCCCCCCccccc
Q 015972 257 YYSPGVAELFFGGETTGLK---------NLPVVFDSGSSYTYLNRVTYQTLTSIMKKELSAKSLKE-APEDETLPLCWKG 326 (397)
Q Consensus 257 ~y~v~l~~i~v~g~~~~~~---------~~~~iiDSGTs~~~lp~~~~~~l~~~i~~~~~~~~~~~-~~~~~~~~~C~~~ 326 (397)
+|.|.+++|+|+++.+.+. .+.+||||||++++||+++|++|+++|.+++...++.+ ......++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 5899999999999998654 36799999999999999999999999999998654333 2234566789987
Q ss_pred ccCCcccccccccccEEEEEEecCCCCeEEEECCCeeEEEeCCCcEEEEEEeCCcCCCCCeeEEccccc
Q 015972 327 RRPFKNVHDVKKCFRTLALSFTDGKTRTLFELTPEAYLIISNKGNVCLGILNGAEVGLQDLNVIGGIGD 395 (397)
Q Consensus 327 ~~~~~~~~~~~~~~P~i~f~f~g~~~~~~~~l~p~~yi~~~~~~~~C~~~~~~~~~~~~~~~IlGdv~~ 395 (397)
+... .......+|+|+|+|.| +++++|++++|++...++..|+++.... .+..+.+|||+.++
T Consensus 81 ~~~~--~~~~~~~~P~i~l~F~~---ga~l~l~~~~y~~~~~~~~~Cla~~~~~-~~~~~~~viG~~~~ 143 (161)
T PF14541_consen 81 SSFG--VNRDWAKFPTITLHFEG---GADLTLPPENYFVQVSPGVFCLAFVPSD-ADDDGVSVIGNFQQ 143 (161)
T ss_dssp GCS---EETTEESS--EEEEETT---SEEEEE-HHHHEEEECTTEEEESEEEET-STTSSSEEE-HHHC
T ss_pred cccc--cccccccCCeEEEEEeC---CcceeeeccceeeeccCCCEEEEEEccC-CCCCCcEEECHHHh
Confidence 6410 11234579999999997 5999999999999988889999999882 12355789999875
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.06 E-value=1.3e-05 Score=62.81 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=64.2
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCccee
Q 015972 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYEL 146 (397)
Q Consensus 67 ~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~~~~~i 146 (397)
.|++++.|+ .+++.++|||||+.+|+... ....+.. .. .......+
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~-~~~~l~~----~~---------------------------~~~~~~~~ 47 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEE-LAERLGL----PL---------------------------TLGGKVTV 47 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHH-HHHHcCC----Cc---------------------------cCCCcEEE
Confidence 589999999 59999999999999999764 1111110 00 01225567
Q ss_pred eeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCCCCCCCccEEEecCC
Q 015972 147 EYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGK 202 (397)
Q Consensus 147 ~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~ 202 (397)
..++|.........+.++++ +....++.+........ ..+||||+.+
T Consensus 48 ~~~~G~~~~~~~~~~~i~ig----~~~~~~~~~~v~d~~~~-----~~~gIlG~d~ 94 (96)
T cd05483 48 QTANGRVRAARVRLDSLQIG----GITLRNVPAVVLPGDAL-----GVDGLLGMDF 94 (96)
T ss_pred EecCCCccceEEEcceEEEC----CcEEeccEEEEeCCccc-----CCceEeChHH
Confidence 77888666777778899995 55566677766654311 5899999854
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=96.05 E-value=0.048 Score=44.93 Aligned_cols=95 Identities=15% Similarity=0.100 Sum_probs=59.5
Q ss_pred CeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcc
Q 015972 65 TGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDY 144 (397)
Q Consensus 65 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~~~~ 144 (397)
++.|++++.|. .+++.+++|||++.+-+... --.... .++. ......
T Consensus 9 ~g~~~v~~~In--G~~~~flVDTGAs~t~is~~-~A~~Lg------l~~~------------------------~~~~~~ 55 (121)
T TIGR02281 9 DGHFYATGRVN--GRNVRFLVDTGATSVALNEE-DAQRLG------LDLN------------------------RLGYTV 55 (121)
T ss_pred CCeEEEEEEEC--CEEEEEEEECCCCcEEcCHH-HHHHcC------CCcc------------------------cCCceE
Confidence 78999999997 47999999999999987653 111100 0110 001123
Q ss_pred eeeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCCCCCCCccEEEecCC
Q 015972 145 ELEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLGK 202 (397)
Q Consensus 145 ~i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg~ 202 (397)
.+.=+.|......+.-|.+.++ .....|+.+.+.... ...+|+||+.+
T Consensus 56 ~~~ta~G~~~~~~~~l~~l~iG----~~~~~nv~~~v~~~~------~~~~~LLGm~f 103 (121)
T TIGR02281 56 TVSTANGQIKAARVTLDRVAIG----GIVVNDVDAMVAEGG------ALSESLLGMSF 103 (121)
T ss_pred EEEeCCCcEEEEEEEeCEEEEC----CEEEeCcEEEEeCCC------cCCceEcCHHH
Confidence 3444556444455678899995 566777777665432 11379999864
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=95.27 E-value=0.14 Score=39.05 Aligned_cols=89 Identities=18% Similarity=0.251 Sum_probs=51.3
Q ss_pred EEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCCCCCCCCCCcceeeeC
Q 015972 70 VTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHHNCEDPAQCDYELEYA 149 (397)
Q Consensus 70 ~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~~c~~~~~~~~~i~Yg 149 (397)
+++.|+ .+++.+++|||++.+.+... -+.... ..+. .......+.-.
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~-~~~~l~------~~~~------------------------~~~~~~~~~~~ 47 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRS-LAKKLG------LKPR------------------------PKSVPISVSGA 47 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHH-HHHHcC------CCCc------------------------CCceeEEEEeC
Confidence 356776 48999999999998877644 221111 0000 00112344445
Q ss_pred CCCeEEEEEEEEEEEeeccCCCcCCCceEEEeeEecCCCCCCCCccEEEecC
Q 015972 150 DGGSSLGVLVKDAFAFNYTNGQRLNPRLALGCGYNQVPGASYHPLDGILGLG 201 (397)
Q Consensus 150 ~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~~~~~~~~~~~~~~~GIlGLg 201 (397)
+|........-+.++++ +....++.|-... .....+||||+-
T Consensus 48 ~g~~~~~~~~~~~i~ig----~~~~~~~~~~v~~------~~~~~~~iLG~d 89 (90)
T PF13650_consen 48 GGSVTVYRGRVDSITIG----GITLKNVPFLVVD------LGDPIDGILGMD 89 (90)
T ss_pred CCCEEEEEEEEEEEEEC----CEEEEeEEEEEEC------CCCCCEEEeCCc
Confidence 55544555666788885 4455566665444 134579999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=93.96 E-value=0.45 Score=39.23 Aligned_cols=31 Identities=16% Similarity=0.214 Sum_probs=26.6
Q ss_pred CeeEEEEEEeCCCCcEEEEEEEcCCCceEEecC
Q 015972 65 TGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (397)
Q Consensus 65 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~ 97 (397)
...+++++.|+ .+++.+++|||++..++...
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~ 44 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKA 44 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHH
Confidence 44689999998 58999999999999998754
No 31
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=91.09 E-value=0.26 Score=38.09 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=24.6
Q ss_pred EEEEEEeCCCCcEEEEEEEcCCCceEEecC
Q 015972 68 YNVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (397)
Q Consensus 68 Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~ 97 (397)
|++++.|+ .+++.+++||||+..++..+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~ 28 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEK 28 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHH
Confidence 57889998 48999999999999999765
No 32
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=88.75 E-value=1 Score=36.94 Aligned_cols=35 Identities=20% Similarity=0.226 Sum_probs=27.6
Q ss_pred CceeEEeeEEEECCeEeecCCCCEEEcCCCcceecCHHHHHHH
Q 015972 256 KYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (397)
Q Consensus 256 ~~y~v~l~~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (397)
++|.+ .+.+||+.+ .++||||.+.+.+++++.+++
T Consensus 10 g~~~v---~~~InG~~~-----~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 10 GHFYA---TGRVNGRNV-----RFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CeEEE---EEEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 56654 466888754 499999999999999988665
No 33
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=86.76 E-value=1.2 Score=32.78 Aligned_cols=31 Identities=23% Similarity=0.276 Sum_probs=27.9
Q ss_pred CeeEEEEEEeCCCCcEEEEEEEcCCCceEEecC
Q 015972 65 TGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (397)
Q Consensus 65 ~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~ 97 (397)
.+.+++++.||. +.+..++||||+...|+..
T Consensus 6 ~g~~~v~~~I~g--~~~~alvDtGat~~fis~~ 36 (72)
T PF13975_consen 6 PGLMYVPVSIGG--VQVKALVDTGATHNFISES 36 (72)
T ss_pred CCEEEEEEEECC--EEEEEEEeCCCcceecCHH
Confidence 678999999995 9999999999999988765
No 34
>PF13650 Asp_protease_2: Aspartyl protease
Probab=85.72 E-value=1.3 Score=33.51 Aligned_cols=29 Identities=21% Similarity=0.394 Sum_probs=24.0
Q ss_pred EEECCeEeecCCCCEEEcCCCcceecCHHHHHHH
Q 015972 265 LFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (397)
Q Consensus 265 i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (397)
+.++|+.+ .++||||++.+.+.+++++++
T Consensus 3 v~vng~~~-----~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKPV-----RFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEEE-----EEEEcCCCCcEEECHHHHHHc
Confidence 56788754 499999999999999988765
No 35
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=82.70 E-value=2.1 Score=32.86 Aligned_cols=30 Identities=27% Similarity=0.489 Sum_probs=25.7
Q ss_pred EEEECCeEeecCCCCEEEcCCCcceecCHHHHHHH
Q 015972 264 ELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (397)
Q Consensus 264 ~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (397)
.+.|+|+.+. +.||||++.+.++++.+.++
T Consensus 4 ~~~Ing~~i~-----~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPLK-----FQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEEE-----EEEcCCcceEEeCHHHHHHh
Confidence 4678888765 89999999999999998765
No 36
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=81.34 E-value=2.9 Score=30.74 Aligned_cols=30 Identities=17% Similarity=0.395 Sum_probs=24.8
Q ss_pred EEEECCeEeecCCCCEEEcCCCcceecCHHHHHHH
Q 015972 264 ELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (397)
Q Consensus 264 ~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (397)
.+.++|+.+. +++|||.+-.+++.+.++.+
T Consensus 12 ~~~I~g~~~~-----alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 12 PVSIGGVQVK-----ALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEEECCEEEE-----EEEeCCCcceecCHHHHHHh
Confidence 4667776654 99999999999999988765
No 37
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=78.77 E-value=3.2 Score=32.28 Aligned_cols=27 Identities=26% Similarity=0.317 Sum_probs=22.3
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceEEecC
Q 015972 69 NVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (397)
Q Consensus 69 ~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~ 97 (397)
+.+|.|.. +++.+++||||+.+-++..
T Consensus 7 ~i~v~i~g--~~i~~LlDTGA~vsiI~~~ 33 (100)
T PF00077_consen 7 YITVKING--KKIKALLDTGADVSIISEK 33 (100)
T ss_dssp EEEEEETT--EEEEEEEETTBSSEEESSG
T ss_pred eEEEeECC--EEEEEEEecCCCcceeccc
Confidence 46677774 7999999999999988765
No 38
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=78.60 E-value=4.1 Score=30.99 Aligned_cols=30 Identities=20% Similarity=0.354 Sum_probs=23.9
Q ss_pred EEEECCeEeecCCCCEEEcCCCcceecCHHHHHHH
Q 015972 264 ELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (397)
Q Consensus 264 ~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (397)
.+.+|++.+ .++||||++.+.++.+..+.+
T Consensus 6 ~v~i~~~~~-----~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQPV-----RFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEEE-----EEEEECCCCcEEcCHHHHHHc
Confidence 466777654 499999999999999877654
No 39
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=75.89 E-value=3.9 Score=31.15 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=24.3
Q ss_pred EEECCeEeecCCCCEEEcCCCcceecCHHHHHHH
Q 015972 265 LFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (397)
Q Consensus 265 i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (397)
+.+||+.+. +++|||.+.+.++++.++.+
T Consensus 3 v~InG~~~~-----fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPIV-----FLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEEE-----EEEECCCCeEEECHHHhhhc
Confidence 567777654 89999999999999988765
No 40
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=73.24 E-value=20 Score=32.18 Aligned_cols=77 Identities=12% Similarity=0.104 Sum_probs=52.3
Q ss_pred eEeeeecccCCeeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCCCCCCCCCCCCCCCCCCCCccccccCCCCCC
Q 015972 55 LFQVHGNVYPTGYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCVEAPHPLYRPSNDLVPCEDPICASLHAPGHH 134 (397)
Q Consensus 55 ~~pl~g~~~~~~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~~~~~~~f~p~~S~~~C~s~~C~~~~~~~~~ 134 (397)
.+-|..+ .+|.|.++..|= .|++..++|||.+..-+..+ .... --|+...
T Consensus 95 ~v~Lak~--~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~-dA~R------lGid~~~------------------- 144 (215)
T COG3577 95 EVSLAKS--RDGHFEANGRVN--GKKVDFLVDTGATSVALNEE-DARR------LGIDLNS------------------- 144 (215)
T ss_pred EEEEEec--CCCcEEEEEEEC--CEEEEEEEecCcceeecCHH-HHHH------hCCCccc-------------------
Confidence 4555544 378999999996 49999999999999888754 2211 1233321
Q ss_pred CCCCCCCCcceeeeCCCCeEEEEEEEEEEEee
Q 015972 135 NCEDPAQCDYELEYADGGSSLGVLVKDAFAFN 166 (397)
Q Consensus 135 ~c~~~~~~~~~i~Yg~Gs~~~G~~~~D~v~~~ 166 (397)
.+.++.+.-++|....-.+--|.|.|+
T Consensus 145 -----l~y~~~v~TANG~~~AA~V~Ld~v~IG 171 (215)
T COG3577 145 -----LDYTITVSTANGRARAAPVTLDRVQIG 171 (215)
T ss_pred -----cCCceEEEccCCccccceEEeeeEEEc
Confidence 133556666788555566778999995
No 41
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=71.91 E-value=35 Score=33.47 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=33.7
Q ss_pred eeeCCCCeEEEEEEEEEEEeeccCCCcCCCceEEEe----------eEecC--CCCCCCCccEEEecCCC
Q 015972 146 LEYADGGSSLGVLVKDAFAFNYTNGQRLNPRLALGC----------GYNQV--PGASYHPLDGILGLGKG 203 (397)
Q Consensus 146 i~Yg~Gs~~~G~~~~D~v~~~~~~g~~~~~~~~Fg~----------~~~~~--~~~~~~~~~GIlGLg~~ 203 (397)
..|++| ..-|-+.+-.|+|+.... ..++-+.++- ..... .........||||+|.-
T Consensus 82 ~~F~sg-ytWGsVr~AdV~igge~A-~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 82 AQFASG-YTWGSVRTADVTIGGETA-SSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred hhccCc-ccccceEEEEEEEcCeec-cccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 468887 888999999999974311 1233333332 11110 01234568999999864
No 42
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=71.71 E-value=5.5 Score=30.66 Aligned_cols=25 Identities=32% Similarity=0.509 Sum_probs=21.0
Q ss_pred EEEeCCCCcEEEEEEEcCCCceEEecC
Q 015972 71 TMYIGQPARPYFLDLDTGSDLTWLQCD 97 (397)
Q Consensus 71 ~i~iGTP~Q~~~v~~DTGSs~~Wv~~~ 97 (397)
.+.|+ .|.+.+++|||++++-+...
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~ 26 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEN 26 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEccc
Confidence 45666 69999999999999998754
No 43
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=70.62 E-value=6.5 Score=32.22 Aligned_cols=30 Identities=17% Similarity=0.282 Sum_probs=23.9
Q ss_pred EEEECCeEeecCCCCEEEcCCCcceecCHHHHHHH
Q 015972 264 ELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (397)
Q Consensus 264 ~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (397)
.+.++|..+ .++||||++.+.++++.++++
T Consensus 20 ~~~Ing~~~-----~~LvDTGAs~s~Is~~~a~~l 49 (124)
T cd05479 20 NVEINGVPV-----KAFVDSGAQMTIMSKACAEKC 49 (124)
T ss_pred EEEECCEEE-----EEEEeCCCceEEeCHHHHHHc
Confidence 355677654 489999999999999988764
No 44
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=67.52 E-value=5.5 Score=30.95 Aligned_cols=28 Identities=11% Similarity=0.355 Sum_probs=22.6
Q ss_pred eEEEECCeEeecCCCCEEEcCCCcceecCHHHH
Q 015972 263 AELFFGGETTGLKNLPVVFDSGSSYTYLNRVTY 295 (397)
Q Consensus 263 ~~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~ 295 (397)
..|.++|+.+. ++||||+..+.++++.+
T Consensus 8 i~v~i~g~~i~-----~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 8 ITVKINGKKIK-----ALLDTGADVSIISEKDW 35 (100)
T ss_dssp EEEEETTEEEE-----EEEETTBSSEEESSGGS
T ss_pred EEEeECCEEEE-----EEEecCCCcceeccccc
Confidence 45778887655 99999999999998744
No 45
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=67.16 E-value=7.2 Score=29.64 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=20.2
Q ss_pred EEEeCCCCcEEEEEEEcCCCceEEecC
Q 015972 71 TMYIGQPARPYFLDLDTGSDLTWLQCD 97 (397)
Q Consensus 71 ~i~iGTP~Q~~~v~~DTGSs~~Wv~~~ 97 (397)
.+.|. .|++.+++|||++.+-+...
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~ 26 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSD 26 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHH
Confidence 34554 48999999999999998765
No 46
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=56.18 E-value=14 Score=28.70 Aligned_cols=30 Identities=17% Similarity=0.330 Sum_probs=23.0
Q ss_pred EEECCeEeecCCCCEEEcCCCcceecCHHHHHHH
Q 015972 265 LFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (397)
Q Consensus 265 i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (397)
+.++|+ .+-.+.+|||++...+|...+..+
T Consensus 3 ~~i~g~----~~v~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 3 MKINGK----QSVKFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred eEeCCc----eeEEEEEecCCEEEeccHHHHhhh
Confidence 556663 123589999999999999988765
No 47
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=55.95 E-value=15 Score=31.66 Aligned_cols=29 Identities=17% Similarity=0.358 Sum_probs=22.0
Q ss_pred EEEEEeCCCCcEEEEEEEcCCCceEEecC
Q 015972 69 NVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (397)
Q Consensus 69 ~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~ 97 (397)
...+.++.-..++.++|||||....+...
T Consensus 34 T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 34 TAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred EEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 34445555568999999999999888754
No 48
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=52.98 E-value=18 Score=29.79 Aligned_cols=30 Identities=13% Similarity=0.204 Sum_probs=23.5
Q ss_pred EEEECCeEeecCCCCEEEcCCCcceecCHHHHHHH
Q 015972 264 ELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (397)
Q Consensus 264 ~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (397)
.+++||+.+. |+||||+..+.++.+.++++
T Consensus 28 ~~~ing~~vk-----A~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPVK-----AFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEEE-----EEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEEE-----EEEeCCCCccccCHHHHHHc
Confidence 4678888764 99999999999999988763
No 49
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=52.85 E-value=11 Score=30.19 Aligned_cols=22 Identities=18% Similarity=0.140 Sum_probs=18.4
Q ss_pred CCEEEcCCCccee-cCHHHHHHH
Q 015972 277 LPVVFDSGSSYTY-LNRVTYQTL 298 (397)
Q Consensus 277 ~~~iiDSGTs~~~-lp~~~~~~l 298 (397)
-.++||||.+... +|.++++++
T Consensus 17 v~~LVDTGat~~~~l~~~~a~~l 39 (107)
T TIGR03698 17 VRALVDTGFSGFLLVPPDIVNKL 39 (107)
T ss_pred EEEEEECCCCeEEecCHHHHHHc
Confidence 3699999999886 999988754
No 50
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=49.28 E-value=27 Score=31.38 Aligned_cols=41 Identities=15% Similarity=0.242 Sum_probs=30.8
Q ss_pred cccCCCCceeEEeeEEEECCeEeecCCCCEEEcCCCcceecCHHHHHHH
Q 015972 250 MSSDYTKYYSPGVAELFFGGETTGLKNLPVVFDSGSSYTYLNRVTYQTL 298 (397)
Q Consensus 250 l~~~~~~~y~v~l~~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~~~~l 298 (397)
+.+...+||.+ ...|||+.+. .+||||.|.+.++++..+++
T Consensus 98 Lak~~~GHF~a---~~~VNGk~v~-----fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 98 LAKSRDGHFEA---NGRVNGKKVD-----FLVDTGATSVALNEEDARRL 138 (215)
T ss_pred EEecCCCcEEE---EEEECCEEEE-----EEEecCcceeecCHHHHHHh
Confidence 33333366655 4679998876 79999999999999987654
No 51
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=42.90 E-value=17 Score=29.75 Aligned_cols=20 Identities=25% Similarity=0.370 Sum_probs=18.0
Q ss_pred EEEcCCCc-ceecCHHHHHHH
Q 015972 279 VVFDSGSS-YTYLNRVTYQTL 298 (397)
Q Consensus 279 ~iiDSGTs-~~~lp~~~~~~l 298 (397)
.+||||-+ ++.+|+++++++
T Consensus 29 ~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 29 ELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eEEecCCceeEEeCHHHHHhc
Confidence 49999999 999999999865
No 52
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=37.98 E-value=21 Score=29.45 Aligned_cols=36 Identities=22% Similarity=0.220 Sum_probs=24.9
Q ss_pred eeEEEEEEeCCCCcEEEEEEEcCCCceEEecCCCCCCCC
Q 015972 66 GYYNVTMYIGQPARPYFLDLDTGSDLTWLQCDAPCVRCV 104 (397)
Q Consensus 66 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~~~c~~C~ 104 (397)
..+|++++|.. ++++..+|||+..+-+... -+..|.
T Consensus 23 ~mLyI~~~ing--~~vkA~VDtGAQ~tims~~-~a~r~g 58 (124)
T PF09668_consen 23 SMLYINCKING--VPVKAFVDTGAQSTIMSKS-CAERCG 58 (124)
T ss_dssp ---EEEEEETT--EEEEEEEETT-SS-EEEHH-HHHHTT
T ss_pred ceEEEEEEECC--EEEEEEEeCCCCccccCHH-HHHHcC
Confidence 36899999984 9999999999999988754 234554
No 53
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=34.91 E-value=50 Score=26.26 Aligned_cols=27 Identities=15% Similarity=0.084 Sum_probs=19.8
Q ss_pred EEEEeCCCCc----EEEEEEEcCCCceE-Eec
Q 015972 70 VTMYIGQPAR----PYFLDLDTGSDLTW-LQC 96 (397)
Q Consensus 70 ~~i~iGTP~Q----~~~v~~DTGSs~~W-v~~ 96 (397)
+++.|..|.| ++.+++|||.+..- ++.
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~~l~~ 33 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFLLVPP 33 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEEecCH
Confidence 5778888733 67899999998664 543
No 54
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=29.48 E-value=52 Score=31.08 Aligned_cols=45 Identities=18% Similarity=0.186 Sum_probs=26.9
Q ss_pred ceeEeeeecccCCeeEEEE---EEeCCCC--------cEEEEEEEcCCCceEEecC
Q 015972 53 SLLFQVHGNVYPTGYYNVT---MYIGQPA--------RPYFLDLDTGSDLTWLQCD 97 (397)
Q Consensus 53 ~~~~pl~g~~~~~~~Y~~~---i~iGTP~--------Q~~~v~~DTGSs~~Wv~~~ 97 (397)
..-.|+..+......|.++ |+||.-. ....+++|||++++++|..
T Consensus 133 l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~ 188 (299)
T cd05472 133 ASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPS 188 (299)
T ss_pred ceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHH
Confidence 3445654322112456554 5777421 2235899999999999854
No 55
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=29.36 E-value=99 Score=28.60 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.2
Q ss_pred EEEEEEEcCCCceEEecC
Q 015972 80 PYFLDLDTGSDLTWLQCD 97 (397)
Q Consensus 80 ~~~v~~DTGSs~~Wv~~~ 97 (397)
...++||||++.+.+|..
T Consensus 176 ~~~ai~DTGTs~~~lp~~ 193 (265)
T cd05476 176 SGGTIIDSGTTLTYLPDP 193 (265)
T ss_pred CCcEEEeCCCcceEcCcc
Confidence 356899999999999865
No 56
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=25.83 E-value=98 Score=25.75 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=24.5
Q ss_pred eEEEEEEeCCCCcEEEEEEEcCCCceEEecC
Q 015972 67 YYNVTMYIGQPARPYFLDLDTGSDLTWLQCD 97 (397)
Q Consensus 67 ~Y~~~i~iGTP~Q~~~v~~DTGSs~~Wv~~~ 97 (397)
.-.+.+.|.+ ++..+++|+|++...|...
T Consensus 21 vi~g~~~I~~--~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 21 VITGTFLINS--IPASVLIDSGATHSFISSS 49 (135)
T ss_pred eEEEEEEecc--EEEEEEEecCCCcEEccHH
Confidence 4678888886 8999999999999988654
No 57
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=25.83 E-value=72 Score=30.49 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=22.6
Q ss_pred eeEEEE---EEeCCC-----CcEEEEEEEcCCCceEEecC
Q 015972 66 GYYNVT---MYIGQP-----ARPYFLDLDTGSDLTWLQCD 97 (397)
Q Consensus 66 ~~Y~~~---i~iGTP-----~Q~~~v~~DTGSs~~Wv~~~ 97 (397)
+.|.++ |.||.. .+...++||||++.+++|..
T Consensus 188 ~~w~v~l~~i~v~g~~~~~~~~~~~aivDTGTs~~~lP~~ 227 (317)
T cd06098 188 GYWQFEMGDVLIGGKSTGFCAGGCAAIADSGTSLLAGPTT 227 (317)
T ss_pred cEEEEEeCeEEECCEEeeecCCCcEEEEecCCcceeCCHH
Confidence 356554 577752 23457999999999999854
No 58
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=25.52 E-value=94 Score=28.56 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=28.5
Q ss_pred ceeEeeeecccCCeeEEEE---EEeCC-----CCcEEEEEEEcCCCceEEecC
Q 015972 53 SLLFQVHGNVYPTGYYNVT---MYIGQ-----PARPYFLDLDTGSDLTWLQCD 97 (397)
Q Consensus 53 ~~~~pl~g~~~~~~~Y~~~---i~iGT-----P~Q~~~v~~DTGSs~~Wv~~~ 97 (397)
....|+..+ ....|.+. |.||. ......++||||++.+|+|..
T Consensus 169 ~~~~p~~~~--~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~~~lp~~ 219 (283)
T cd05471 169 LTYTPVVSN--GPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSLIYLPSS 219 (283)
T ss_pred eEEEecCCC--CCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCCEeCCHH
Confidence 344565432 13456544 46665 245679999999999999865
No 59
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=25.47 E-value=75 Score=29.62 Aligned_cols=32 Identities=16% Similarity=0.302 Sum_probs=22.9
Q ss_pred eeEEEE---EEeCC---CCcEEEEEEEcCCCceEEecC
Q 015972 66 GYYNVT---MYIGQ---PARPYFLDLDTGSDLTWLQCD 97 (397)
Q Consensus 66 ~~Y~~~---i~iGT---P~Q~~~v~~DTGSs~~Wv~~~ 97 (397)
..|.++ |+||. +.....++||||++.+.+|..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 456544 57873 223457999999999999865
No 60
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=24.95 E-value=1.8e+02 Score=24.13 Aligned_cols=22 Identities=23% Similarity=0.449 Sum_probs=18.1
Q ss_pred CCEEEcCCCcceecCHHHHHHH
Q 015972 277 LPVVFDSGSSYTYLNRVTYQTL 298 (397)
Q Consensus 277 ~~~iiDSGTs~~~lp~~~~~~l 298 (397)
..++||||+|-.++..+...++
T Consensus 33 ~~vLiDSGAThsFIs~~~a~~~ 54 (135)
T PF08284_consen 33 ASVLIDSGATHSFISSSFAKKL 54 (135)
T ss_pred EEEEEecCCCcEEccHHHHHhc
Confidence 3489999999999998876543
No 61
>cd00303 retropepsin_like Retropepsins; pepsin-like aspartate proteases. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements, as well as eukaryotic dna-damage-inducible proteins (DDIs), and bacterial aspartate peptidases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples
Probab=23.14 E-value=1.4e+02 Score=20.59 Aligned_cols=20 Identities=20% Similarity=0.395 Sum_probs=17.4
Q ss_pred CEEEcCCCcceecCHHHHHH
Q 015972 278 PVVFDSGSSYTYLNRVTYQT 297 (397)
Q Consensus 278 ~~iiDSGTs~~~lp~~~~~~ 297 (397)
.+++|+|.+...+..+.++.
T Consensus 11 ~~liDtgs~~~~~~~~~~~~ 30 (92)
T cd00303 11 RALVDSGASVNFISESLAKK 30 (92)
T ss_pred EEEEcCCCcccccCHHHHHH
Confidence 58999999999999988754
No 62
>PF05585 DUF1758: Putative peptidase (DUF1758); InterPro: IPR008737 This is a family of nematode proteins of unknown function []. However, it seems likely that these proteins act as aspartic peptidases.
Probab=21.05 E-value=47 Score=28.45 Aligned_cols=19 Identities=26% Similarity=0.345 Sum_probs=0.0
Q ss_pred CCCCcEEEEEEEcCCCceEE
Q 015972 75 GQPARPYFLDLDTGSDLTWL 94 (397)
Q Consensus 75 GTP~Q~~~v~~DTGSs~~Wv 94 (397)
|. .++.+++|||||...+|
T Consensus 8 g~-~~~~~~LlDsGSq~SfI 26 (164)
T PF05585_consen 8 GN-QVEARALLDSGSQRSFI 26 (164)
T ss_pred CC-EEEEEEEEecCCchhHH
No 63
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=20.27 E-value=1e+02 Score=28.77 Aligned_cols=28 Identities=21% Similarity=0.278 Sum_probs=19.8
Q ss_pred EEEECCeEeecCCCCEEEcCCCcceecCHHH
Q 015972 264 ELFFGGETTGLKNLPVVFDSGSSYTYLNRVT 294 (397)
Q Consensus 264 ~i~v~g~~~~~~~~~~iiDSGTs~~~lp~~~ 294 (397)
.|.||.-.- ...++||||++.+++|..-
T Consensus 4 ~i~vGtP~Q---~~~v~~DTGS~~~wv~~~~ 31 (278)
T cd06097 4 PVKIGTPPQ---TLNLDLDTGSSDLWVFSSE 31 (278)
T ss_pred eEEECCCCc---EEEEEEeCCCCceeEeeCC
Confidence 466765221 2359999999999999753
Done!