Citrus Sinensis ID: 015973

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------

MAEASRTFHTILLPSFSHLHKAQSPAGFTDFPRKRCGHRIVVHCSVSTTNDASRTKTTVTQNMIPWGCEIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITGWPLELMAYAYLVVSPPSMKGKFEEVRQF

ccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEccccEEEEEccccccccEEEEccccccccccccccccHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccEEEcccccccccccccEEEEEEEccccEEEEEEccccccccEEEcccccccHHHHHHHcccccccccccccEEEEEcccccccccHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHcccccccHHHHHHHcc

cccHccccHccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccHHHHHHHHHHHHcccccccEEEEEccccccEEEEEcccccccEEEEEccHEEEcHHHHcccccHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHccccccccEEccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccEEEEEHHHHHccccccEEEEEEcccccEEEEEEEcccccccEEEEEcccccHHHHHHHcccccccccccccEEEEEEEcccccHHHHHHHHHHHHccccccEEEEcccccccHcHHHHHEEEEccccHHHHHHHHHcc

maeasrtfhtillpsfshlhkaqspagftdfprkrcghrivvhcsvsttndasrtkttvtqnmipwgceidslENASTLQKWlsdsglppqkmaiqkvdVGERGLVALKNIrkgekllfvppslvitadskwscpeagevlkqcsvpdwpLLATYLISEAsfekssrwsnyisalprqpyslLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIfskypdlfpeevfnmetFKWSFGILFSRLvrlpsmdgrvalvpwadmlnhscevetfldydkssqgvvfttdrqyqpgeQVFISYgkksngelllsygfvpregtnpsdsvelplslkksdKCYKEKLEALRKYGlsasecfpiqitgwPLELMAYAYLVvsppsmkgkfEEVRQF

MAEASRTFHTILLPSFSHLHKAQSPAGFTDFPRKRCGHRIVVHcsvsttndasrtkttvtqnmiPWGCEIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKnirkgekllfvppSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWsnyisalprqpySLLYWTRAELDRYLEASQIRERAIEritnvigtyndLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVpregtnpsdsvelplslkksdkCYKEKLEALRKYGLSASECFPIQITGWPLELMAYAYLVVSPPSMKGKFEEVRQF

*******FHTILLPSFSHLHKAQSPAGFTDFPRKRCGHRIVVHCSVSTTNDASRTKTTVTQNMIPWGCEIDSLENASTLQKWLSDS*****KMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVP********************KCYKEKLEALRKYGLSASECFPIQITGWPLELMAYAYLVV***************

*********TI******************************************************************TLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITGWPLELMAYAYLVVSPPSM*GK*EEVRQF

*********************************************************************IDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITGWPLELMAYAYLVVSPPSMKGKFEEVRQF

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		397	2.2.26 [Sep-21-2011]
Q43088		489	Ribulose-1,5 bisphosphate	N/A	no	0.695	0.564	0.327	6e-24
P94026		491	Ribulose-1,5 bisphosphate	N/A	no	0.740	0.598	0.299	5e-23
B2KI88		594	Histone-lysine N-methyltr	N/A	no	0.738	0.493	0.277	1e-21
B5FW36		595	Histone-lysine N-methyltr	N/A	no	0.738	0.492	0.274	3e-21
A9X1D0		595	Histone-lysine N-methyltr	N/A	no	0.738	0.492	0.274	4e-21
Q9XI84		482	[Fructose-bisphosphate al	no	no	0.732	0.603	0.305	4e-21
B0VX69		595	Histone-lysine N-methyltr	yes	no	0.738	0.492	0.274	4e-21
E2RBS6		588	Histone-lysine N-methyltr	yes	no	0.738	0.498	0.274	5e-21
Q86TU7		594	Histone-lysine N-methyltr	yes	no	0.738	0.493	0.274	5e-21
B1MTJ4		595	Histone-lysine N-methyltr	N/A	no	0.738	0.492	0.274	6e-21

>sp\|Q43088\|RBCMT_PEA Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Pisum sativum GN=RBCMT PE=1 SV=1	Back alignment and function desciption

 Score =  112 bits (279), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 99/302 (32%), Positives = 148/302 (49%), Gaps = 26/302 (8%)

Query: 78  TLQKWLSDSGLPPQKMAIQKVDVGER-GLVALKNIRKGEKLLFVPPSLVITADSKWSCPE 136
           T  KWL + G+   K  ++   V E  GLVALK+I + + +L VP  L I  D+      
Sbjct: 56  TFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDA----VA 111

Query: 137 AGEVLKQCS-VPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLE 195
           A E+ + CS +  W  +  +LI E S E S  W +Y   LP++  S +YW+  EL   L+
Sbjct: 112 ASEIGRVCSELKPWLSVILFLIRERSREDSV-WKHYFGILPQETDSTIYWSEEELQE-LQ 169

Query: 196 ASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSR-LVRLP 254
            SQ+ +  +     V      L   I      LFP+ V  ++ F W+FGIL SR   RL 
Sbjct: 170 GSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPV-TLDDFFWAFGILRSRAFSRLR 228

Query: 255 SMDGRVALVPWADMLNHSCEVET-FLDYDKSSQGVVFTTDRQY--------QPGEQVFIS 305
           + +  + +VP AD++NHS  V T    Y+      +F+ D  +        + GEQV+I 
Sbjct: 229 NEN--LVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQ 286

Query: 306 YG-KKSNGELLLSYGFV-PREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECF 363
           Y   KSN EL L YGF+ P E  +   +  L L + +SD  + +KL+     G + +  F
Sbjct: 287 YDLNKSNAELALDYGFIEPNENRH---AYTLTLEISESDPFFDDKLDVAESNGFAQTAYF 343

Query: 364 PI 365
            I
Sbjct: 344 DI 345

Methylates 'Lys-14' of the large subunit of RuBisCO.
Pisum sativum (taxid: 3888)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2EC: 7

>sp\|P94026\|RBCMT_TOBAC Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic OS=Nicotiana tabacum GN=RBCMT PE=2 SV=1	Back alignment and function description

>sp\|B2KI88\|SETD3_RHIFE Histone-lysine N-methyltransferase setd3 OS=Rhinolophus ferrumequinum GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B5FW36\|SETD3_OTOGA Histone-lysine N-methyltransferase setd3 OS=Otolemur garnettii GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|A9X1D0\|SETD3_PAPAN Histone-lysine N-methyltransferase setd3 OS=Papio anubis GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|Q9XI84\|RBCMT_ARATH [Fructose-bisphosphate aldolase]-lysine N-methyltransferase, chloroplastic OS=Arabidopsis thaliana GN=LSMT-L PE=1 SV=1	Back alignment and function description

>sp\|B0VX69\|SETD3_CALJA Histone-lysine N-methyltransferase setd3 OS=Callithrix jacchus GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|E2RBS6\|SETD3_CANFA Histone-lysine N-methyltransferase setd3 OS=Canis familiaris GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|Q86TU7\|SETD3_HUMAN Histone-lysine N-methyltransferase setd3 OS=Homo sapiens GN=SETD3 PE=1 SV=1	Back alignment and function description

>sp\|B1MTJ4\|SETD3_CALMO Histone-lysine N-methyltransferase setd3 OS=Callicebus moloch GN=SETD3 PE=3 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		397
224129218		503	predicted protein [Populus trichocarpa]	0.979	0.773	0.815	0.0
255582876		508	Ribulose-1,5 bisphosphate carboxylase/ox	0.984	0.769	0.802	0.0
225447500		497	PREDICTED: ribulose-1,5 bisphosphate car	0.957	0.764	0.807	0.0
449453618		497	PREDICTED: ribulose-1,5 bisphosphate car	0.969	0.774	0.784	0.0
356547583		499	PREDICTED: ribulose-1,5 bisphosphate car	0.939	0.747	0.769	1e-177
297829320		504	SET domain-containing protein [Arabidops	0.979	0.771	0.755	1e-173
15231493		504	rubisco methyltransferase-like protein [	0.967	0.761	0.746	1e-172
21537309		504	putative ribulose-1,5-bisphosphate carbo	0.967	0.761	0.741	1e-171
3065835		504	putative methyltransferase [Arabidopsis	0.967	0.761	0.743	1e-171
357462493		497	SET domain-containing protein [Medicago	0.934	0.746	0.760	1e-170

>gi\|224129218\|ref\|XP_002320530.1\| predicted protein [Populus trichocarpa] gi\|222861303\|gb\|EEE98845.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  657 bits (1694), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/396 (81%), Positives = 348/396 (87%), Gaps = 7/396 (1%)

Query: 1   MAEASRT-FHTILLPSFSHLHKAQSPAGFTD-FPRKRCGHRIVVHCSVSTTNDASRTKTT 58
           MAEA R   +T  LPS   LHK      ++  F  KR      + CS+ST++D ++    
Sbjct: 1   MAEACRIILNTTFLPSLHSLHKTHKKVSYSQPFLHKR---HPAIQCSISTSSD-TKAAAK 56

Query: 59  VTQNMIPWGCEIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLL 118
           V++  +PWGC+IDSLENA  LQKWLSDSGLPPQKMAIQKV+VGERGLVALKNIRKGE LL
Sbjct: 57  VSET-VPWGCDIDSLENAEALQKWLSDSGLPPQKMAIQKVEVGERGLVALKNIRKGEMLL 115

Query: 119 FVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQ 178
           FVPPSLVI ADS+WSCPEAGEVLK+ SVPDWPLLATYLISEASFEKSSRWSNYISALPRQ
Sbjct: 116 FVPPSLVIAADSEWSCPEAGEVLKKYSVPDWPLLATYLISEASFEKSSRWSNYISALPRQ 175

Query: 179 PYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMET 238
           PYSLLYWTRAELD YLEASQIRERAIERITNV GTYNDLRLRIFSKYP LFPEEVFNMET
Sbjct: 176 PYSLLYWTRAELDTYLEASQIRERAIERITNVTGTYNDLRLRIFSKYPHLFPEEVFNMET 235

Query: 239 FKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQP 298
           FKWSFGILFSRLVRLPSMDGRVALVPWADMLNHS EVETFLDYDKSS+GVVFTTDR YQP
Sbjct: 236 FKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSSEVETFLDYDKSSKGVVFTTDRPYQP 295

Query: 299 GEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLS 358
           GEQVFISYG+KSNGELLLSYGFVPREGTNPSDSVEL LSLKKSDKCYKEKLEAL+K+GLS
Sbjct: 296 GEQVFISYGRKSNGELLLSYGFVPREGTNPSDSVELSLSLKKSDKCYKEKLEALKKHGLS 355

Query: 359 ASECFPIQITGWPLELMAYAYLVVSPPSMKGKFEEV 394
            S+CFP+Q+TGWPLELMAYAYL VSPPSM  +FEE+
Sbjct: 356 VSQCFPLQVTGWPLELMAYAYLAVSPPSMSRQFEEM 391

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255582876\|ref\|XP_002532210.1\| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis] gi\|223528106\|gb\|EEF30179.1\| Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|225447500\|ref\|XP_002267469.1\| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Vitis vinifera] gi\|296085051\|emb\|CBI28466.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449453618\|ref\|XP_004144553.1\| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus] gi\|449511789\|ref\|XP_004164054.1\| PREDICTED: LOW QUALITY PROTEIN: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356547583\|ref\|XP_003542190.1\| PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|297829320\|ref\|XP_002882542.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297328382\|gb\|EFH58801.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi|15231493|ref|NP_187424.1| rubisco methyltransferase-like protein [Arabidopsis thaliana] gi|6466950|gb|AAF13085.1|AC009176_12 putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] gi|6648179|gb|AAF21177.1|AC013483_1 putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] gi|15028205|gb|AAK76599.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] gi|19310671|gb|AAL85066.1| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana] gi|332641064|gb|AEE74585.1| rubisco methyltransferase-like protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|21537309\|gb\|AAM61650.1\| putative ribulose-1,5-bisphosphate carboxylase/oxygenase small subunit N-methyltransferase I [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|3065835\|gb\|AAC14296.1\| putative methyltransferase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|357462493\|ref\|XP_003601528.1\| SET domain-containing protein [Medicago truncatula] gi\|355490576\|gb\|AES71779.1\| SET domain-containing protein [Medicago truncatula] gi\|388500078\|gb\|AFK38105.1\| unknown [Medicago truncatula]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		397
TAIR\|locus:2077342		504	AT3G07670 [Arabidopsis thalian	0.979	0.771	0.748	6.8e-159
TAIR\|locus:2014764		482	LSMT-L "lysine methyltransfera	0.788	0.649	0.298	5.9e-26
TAIR\|locus:2145663		514	AT5G14260 "AT5G14260" [Arabido	0.725	0.560	0.290	1.8e-25
UNIPROTKB\|B2KI88		594	SETD3 "Histone-lysine N-methyl	0.748	0.5	0.281	1.2e-23
UNIPROTKB\|F6R2J7		594	SETD3 "Uncharacterized protein	0.743	0.496	0.282	2e-23
UNIPROTKB\|F1SAQ4		595	SETD3 "Uncharacterized protein	0.743	0.495	0.290	2.9e-23
UNIPROTKB\|B0VX69		595	SETD3 "Histone-lysine N-methyl	0.743	0.495	0.282	4.5e-23
UNIPROTKB\|B5FW36		595	SETD3 "Histone-lysine N-methyl	0.743	0.495	0.282	4.5e-23
UNIPROTKB\|Q86TU7		594	SETD3 "Histone-lysine N-methyl	0.743	0.496	0.282	6.2e-23
UNIPROTKB\|A9X1D0		595	SETD3 "Histone-lysine N-methyl	0.743	0.495	0.282	6.2e-23

TAIR\|locus:2077342 AT3G07670 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1548 (550.0 bits), Expect = 6.8e-159, P = 6.8e-159
 Identities = 297/397 (74%), Positives = 337/397 (84%)

Query:     1 MAEASRTFHTILLPSFSHLHKAQSP---AGFTDFPRKRCGHRIVVHCSVSTTNDASRTKT 57
             MA+A     + LLP++S LHK ++      F+  P  RC  R  +HCSVS      ++  
Sbjct:     1 MAKAC-LLQSTLLPAYSPLHKLRNQNITLSFSPLPLSRC--RPGIHCSVSAGETTIQSME 57

Query:    58 TVTQNMIPWGCEIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKL 117
                +  I WGCEIDSLENA++LQ WLSDSGLPPQKMAI +VD+GERGLVA +N+RKGEKL
Sbjct:    58 EAPK--ISWGCEIDSLENATSLQNWLSDSGLPPQKMAIDRVDIGERGLVASQNLRKGEKL 115

Query:   118 LFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPR 177
             LFVPPSLVI+ADS+W+  EAGEV+K+  VPDWPLLATYLISEAS +KSSRW NYISALPR
Sbjct:   116 LFVPPSLVISADSEWTNAEAGEVMKRYDVPDWPLLATYLISEASLQKSSRWFNYISALPR 175

Query:   178 QPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNME 237
             QPYSLLYWTR ELD YLEASQIRERAIERITNV+GTY DLR RIFSK+P LFP+EVFN E
Sbjct:   176 QPYSLLYWTRTELDMYLEASQIRERAIERITNVVGTYEDLRSRIFSKHPQLFPKEVFNDE 235

Query:   238 TFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQ 297
             TFKWSFGILFSRLVRLPSMDGR ALVPWADMLNH+CEVETFLDYDKSS+GVVFTTDR YQ
Sbjct:   236 TFKWSFGILFSRLVRLPSMDGRFALVPWADMLNHNCEVETFLDYDKSSKGVVFTTDRPYQ 295

Query:   298 PGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGL 357
             PGEQVFISYG KSNGELLLSYGFVPREGTNPSDSVEL LSL+K+DKCY+EKL+AL+K+GL
Sbjct:   296 PGEQVFISYGNKSNGELLLSYGFVPREGTNPSDSVELALSLRKNDKCYEEKLDALKKHGL 355

Query:   358 SASECFPIQITGWPLELMAYAYLVVSPPSMKGKFEEV 394
             S  +CFP++ITGWP+ELMAYAYLVVSPP M+  FEE+
Sbjct:   356 STPQCFPVRITGWPMELMAYAYLVVSPPDMRNNFEEM 392

GO:0009507 "chloroplast" evidence=ISM

GO:0030785 "[ribulose-bisphosphate carboxylase

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

TAIR\|locus:2014764 LSMT-L "lysine methyltransferase (LSMT)-like" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2145663 AT5G14260 "AT5G14260" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|B2KI88 SETD3 "Histone-lysine N-methyltransferase setd3" [Rhinolophus ferrumequinum (taxid:59479)]	Back alignment and assigned GO terms

UNIPROTKB\|F6R2J7 SETD3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SAQ4 SETD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|B0VX69 SETD3 "Histone-lysine N-methyltransferase setd3" [Callithrix jacchus (taxid:9483)]	Back alignment and assigned GO terms

UNIPROTKB\|B5FW36 SETD3 "Histone-lysine N-methyltransferase setd3" [Otolemur garnettii (taxid:30611)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TU7 SETD3 "Histone-lysine N-methyltransferase setd3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|A9X1D0 SETD3 "Histone-lysine N-methyltransferase setd3" [Papio anubis (taxid:9555)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		397
pfam00856		113	pfam00856, SET, SET domain	3e-10
smart00317		124	smart00317, SET, SET (Su(var)3-9, Enhancer-of-zest	2e-08
pfam09273		128	pfam09273, Rubis-subs-bind, Rubisco LSMT substrate	6e-05

>gnl\|CDD\|216155 pfam00856, SET, SET domain	Back alignment and domain information

 Score = 56.7 bits (137), Expect = 3e-10
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 261 ALVPWADMLNHSCE--VETFLDYDKSSQGVVFTTDRQYQPGEQVFISYG 307
            L   A  +NHSCE   E    +      +V    R  +PGE++ I YG
Sbjct: 65  GLGNVARFINHSCEPNCEVRFVFVNGGDRIVVRALRDIKPGEELTIDYG 113

SET domains are protein lysine methyltransferase enzymes. SET domains appear to be protein-protein interaction domains. It has been demonstrated that SET domains mediate interactions with a family of proteins that display similarity with dual-specificity phosphatases (dsPTPases). A subset of SET domains have been called PR domains. These domains are divergent in sequence from other SET domains, but also appear to mediate protein-protein interaction. The SET domain consists of two regions known as SET-N and SET-C. SET-C forms an unusual and conserved knot-like structure of probably functional importance. Additionally to SET-N and SET-C, an insert region (SET-I) and flanking regions of high structural variability form part of the overall structure. Length = 113

>gnl\|CDD\|214614 smart00317, SET, SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>gnl\|CDD\|220161 pfam09273, Rubis-subs-bind, Rubisco LSMT substrate-binding	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		397
KOG1337		472	consensus N-methyltransferase [General function pr	99.98
KOG1338		466	consensus Uncharacterized conserved protein [Funct	99.97
PF00856		162	SET: SET domain; InterPro: IPR001214 The SET domai	99.75
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	98.97
PF09273		128	Rubis-subs-bind: Rubisco LSMT substrate-binding; I	98.14
KOG1085		392	consensus Predicted methyltransferase (contains a	95.57
KOG2589		453	consensus Histone tail methylase [Chromatin struct	95.38
KOG4442		729	consensus Clathrin coat binding protein/Huntingtin	94.19
KOG1079		739	consensus Transcriptional repressor EZH1 [Transcri	93.63
KOG1080		1005	consensus Histone H3 (Lys4) methyltransferase comp	93.21
COG2940		480	Proteins containing SET domain [General function p	90.37
KOG1082		364	consensus Histone H3 (Lys9) methyltransferase SUV3	82.05

>KOG1337 consensus N-methyltransferase [General function prediction only]	Back alignment and domain information

Probab=99.98  E-value=8.1e-32  Score=277.63  Aligned_cols=286  Identities=39%  Similarity=0.611  Sum_probs=222.1

Q ss_pred             CccchhcHHHHHHHHHhCCCCCCCcEEEeeCCCceEEEEcccCCCCCeEEEcCCCCcccccCCcCCchhhhhhccCCCCC
Q 015973           69 EIDSLENASTLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPD  148 (397)
Q Consensus        69 ~~~~~~~~~~l~~Wl~~~G~~~~~v~i~~~~~~GrGl~A~~~I~~ge~ll~IP~~~~is~~~~~~~~~~~~~l~~~~l~~  148 (397)
                      .....++...+..|.+..|....+..+......++++.+..++..++.+..+|....+........            ..
T Consensus        42 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~  109 (472)
T KOG1337|consen   42 SIASSENIKSLKFWLTGNGLSSSKSSLPGNDIDEWPLLVSIRLIKGEKLLLVPPLLLLIAKRKPYN------------DL  109 (472)
T ss_pred             cCCCccccccceeccccCCcchhhhccccccccccchhhhhhhhhhhhhccCCchhhhccccccCc------------cc
Confidence            333444456677777777776433333222234566666666666666666665555544433211            11


Q ss_pred             h-HHHHHHHHHHhccCCCCCcHHHHHhcCCCCCCccccCHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Q 015973          149 W-PLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPD  227 (397)
Q Consensus       149 ~-~~Lal~Ll~E~~~g~~S~w~pYl~~LP~~~~~pl~w~~~el~~lL~gt~l~~~~~~~~~~~~~~y~~~~~~l~~~~p~  227 (397)
                      . ..++++|++|...+..|.|.+|+..||..+++|++|..+++. .|.++.....+..+...++..|..+.. +...++.
T Consensus       110 ~~~~l~~~l~~~~~~~~~s~w~~~i~~l~~~~~~p~~~~~~~v~-~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  187 (472)
T KOG1337|consen  110 LPIALALFLLLEWAHGEISKWKPYISTLPSQYNSPLLWSEDEVK-SLLSTPLFEIVASRRQNLVNKSAELLE-VLQSHPS  187 (472)
T ss_pred             cHHHHHHHHHHhhhccccccchhhhhhchhhcCCccccCHHHHH-HhhcchhhHHHHHHHHHhhhhHHHHHH-HHHhccc
Confidence            1 578999999998888899999999999999999999999998 488998888877777666665555543 3334554


Q ss_pred             CCC---cccccHHHHHHHHhhhhccceecCCC--------CCceEEeeeeecccCCCCcceeEEeeCCCCeEEEEecCcC
Q 015973          228 LFP---EEVFNMETFKWSFGILFSRLVRLPSM--------DGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQY  296 (397)
Q Consensus       228 ~f~---~~~~t~e~f~WA~~~V~SRaf~~~~~--------~~~~~LvP~~Dm~NH~~~~~~~~~~d~~~~~~~l~a~r~i  296 (397)
                      .++   .+.++++.|.||+++|.||+|+.+..        ....+|+|++||+||+++. +.+.|+..++.+.+++.++|
T Consensus       188 ~~~~~~~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~NH~~~~-~~~~~~~~d~~~~l~~~~~v  266 (472)
T KOG1337|consen  188 LFGSDLFDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLNHSPEV-IKAGYNQEDEAVELVAERDV  266 (472)
T ss_pred             cccccccCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhccCchh-ccccccCCCCcEEEEEeeee
Confidence            432   23489999999999999999987643        2357999999999999998 55667767779999999999


Q ss_pred             CCCCeEEecCCCCChHHHHHcCCcccCCCCCCCceEEEecccCCCCccHHHHHHHHHHCCCCCcceeeeecCCCc
Q 015973          297 QPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITGWP  371 (397)
Q Consensus       297 ~~GeEv~isYG~~sN~~LL~~YGFv~~~~~Np~D~v~l~~~l~~~d~~~~~k~~~L~~~gl~~~~~f~l~~~~~p  371 (397)
                      ++||||||+||+++|++||++||||.+  +||+|.|.|.+.+...|..+..|...+.++++.....|.+...+.+
T Consensus       267 ~~geevfi~YG~~~N~eLL~~YGFv~~--~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (472)
T KOG1337|consen  267 SAGEEVFINYGPKSNAELLLHYGFVEE--DNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLTGEP  339 (472)
T ss_pred             cCCCeEEEecCCCchHHHHHhcCCCCC--CCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeecCCc
Confidence            999999999999999999999999987  9999999999999999999999999999999999888988887766

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices	Back alignment and domain information

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]	Back alignment and domain information

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]	Back alignment and domain information

>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

>COG2940 Proteins containing SET domain [General function prediction only]	Back alignment and domain information

>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		397
1mlv_A		444	Structure And Catalytic Mechanism Of A Set Domain P		6e-25
2h21_A		440	Structure Of Rubisco Lsmt Bound To Adomet Length =		6e-25
3smt_A		497	Crystal Structure Of Human Set Domain-Containing Pr		3e-21
3qxy_A		449	Human Setd6 In Complex With Rela Lys310 Length = 44		2e-10

>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444

Back alignment and structure

Iteration: 1

Score = 111 bits (278), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 99/302 (32%), Positives = 148/302 (49%), Gaps = 26/302 (8%) Query: 78 TLQKWLSDSGLPPQKMAIQKVDVGER-GLVALKNIRKGEKLLFVPPSLVITADSKWSCPE 136 T KWL + G+ K ++ V E GLVALK+I + + +L VP L I D+ Sbjct: 12 TFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDA----VA 67 Query: 137 AGEVLKQCS-VPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLE 195 A E+ + CS + W + +LI E S E S W +Y LP++ S +YW+ EL L+ Sbjct: 68 ASEIGRVCSELKPWLSVILFLIRERSREDSV-WKHYFGILPQETDSTIYWSEEELQE-LQ 125 Query: 196 ASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSR-LVRLP 254 SQ+ + + V L I LFP+ V ++ F W+FGIL SR RL Sbjct: 126 GSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPV-TLDDFFWAFGILRSRAFSRLR 184 Query: 255 SMDGRVALVPWADMLNHSCEVET-FLDYDKSSQGVVFTTDRQY--------QPGEQVFIS 305 + + + +VP AD++NHS V T Y+ +F+ D + + GEQV+I Sbjct: 185 NEN--LVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQ 242 Query: 306 YG-KKSNGELLLSYGFV-PREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECF 363 Y KSN EL L YGF+ P E + + L L + +SD + +KL+ G + + F Sbjct: 243 YDLNKSNAELALDYGFIEPNENRH---AYTLTLEISESDPFFDDKLDVAESNGFAQTAYF 299 Query: 364 PI 365 I Sbjct: 300 DI 301

PyMOL of 1mlv

>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440

Back alignment and structure

>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3 Length = 497

Back alignment and structure

>pdb|3QXY|A Chain A, Human Setd6 In Complex With Rela Lys310 Length = 449

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		397
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	1e-66
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	3e-63
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	7e-63
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	3e-10
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	2e-08
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	2e-08
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497	Back alignment and structure

 Score =  218 bits (556), Expect = 1e-66
 Identities = 79/318 (24%), Positives = 140/318 (44%), Gaps = 14/318 (4%)

Query: 77  STLQKWLSDSGLPPQKMAIQKVDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCP- 135
             L KW S++G   +   +        GL A ++I+  E  L+VP  L++T +S  +   
Sbjct: 79  PDLMKWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELFLWVPRKLLMTVESAKNSVL 138

Query: 136 -EAGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYL 194
                  +         LA +L+ E +   +S W  YI  LP +  + LY+   E+  YL
Sbjct: 139 GPLYSQDRILQAMGNIALAFHLLCERA-SPNSFWQPYIQTLPSEYDTPLYFEEDEVR-YL 196

Query: 195 EASQIRERAIERITNVIGTYNDLR--LRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVR 252
           +++Q       +  N    Y      ++       L  ++ F  E ++W+   + +R  +
Sbjct: 197 QSTQAIHDVFSQYKNTARQYAYFYKVIQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQ 256

Query: 253 LPSMDG---RVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYGKK 309
           +P+ DG    +AL+P  DM NH+  + T   Y+           + ++ GEQ++I YG +
Sbjct: 257 IPTEDGSRVTLALIPLWDMCNHTNGLITT-GYNLEDDRCECVALQDFRAGEQIYIFYGTR 315

Query: 310 SNGELLLSYGFVPREGTNPSDSVELPLSLKKSDKCYKEKLEALRKYGLSASECFPIQITG 369
           SN E ++  GF      N  D V++ L + KSD+ Y  K E L + G+  S  F +  T 
Sbjct: 316 SNAEFVIHSGFFFDN--NSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFALHFTE 373

Query: 370 --WPLELMAYAYLVVSPP 385
                +L+A+  +     
Sbjct: 374 PPISAQLLAFLRVFCMTE 391

PyMOL of 3smt

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449	Back alignment and structure

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Length = 429	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Length = 433	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Length = 490	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		397
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	100.0
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	100.0
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	100.0
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	99.51
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	99.49
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	99.44
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	98.44
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	97.86
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	97.79
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	97.7
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	97.57
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	97.4
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	97.36
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	97.35
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	97.15
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	97.15
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	97.13
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	97.12
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	97.01
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	96.95
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	96.92
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	96.83
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	94.72
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	94.54
3db5_A		151	PR domain zinc finger protein 4; methyltransferase	94.04
3ep0_A		170	PR domain zinc finger protein 12; PR domain-contai	93.54
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	91.89
3dal_A		196	PR domain zinc finger protein 1; methyltransferase	91.34
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	90.68
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	90.02
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	87.98
3ihx_A		152	PR domain zinc finger protein 10; PRDM10, methyltr	87.8
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	86.71
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	84.43
3ray_A		237	PR domain-containing protein 11; structural genomi	82.59
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	82.51
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	80.99
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	80.79
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	80.64

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*	Back alignment and structure

Probab=100.00  E-value=1e-58  Score=473.18  Aligned_cols=317  Identities=22%  Similarity=0.394  Sum_probs=273.1

Q ss_pred             ccchhcHHHHHHHHHhCCCCC-CCcEEEeeC-CCceEEEEcccCCCCCeEEEcCCCCcccccCCcCCchhhhhhcc----
Q 015973           70 IDSLENASTLQKWLSDSGLPP-QKMAIQKVD-VGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQ----  143 (397)
Q Consensus        70 ~~~~~~~~~l~~Wl~~~G~~~-~~v~i~~~~-~~GrGl~A~~~I~~ge~ll~IP~~~~is~~~~~~~~~~~~~l~~----  143 (397)
                      .+..+++++|++|++++|+.+ ++|+|...+ ++||||+|+++|++||+|++||.+++||.+++.    +++++..    
T Consensus        16 ~~~~~~~~~ll~W~~~~G~~~~~~v~i~~~~~~~G~Gv~A~~dI~~ge~ll~IP~~~~ls~~~~~----~~~~l~~~~~~   91 (449)
T 3qxy_A           16 GGDLDPVACFLSWCRRVGLELSPKVAVSRQGTVAGYGMVARESVQAGELLFVVPRAALLSQHTCS----IGGLLERERVA   91 (449)
T ss_dssp             ---CHHHHHHHHHHHHHTCEECTTEEEESSSCSSSSEEEESSCBCTTCEEEEEEGGGCBSTTTST----THHHHHHTTGG
T ss_pred             CCCcHHHHHHHHHHHHCCCeeCCceEEEecCCCceEEEEECCCCCCCCEEEEeCcHHhcChhhhh----HHHHHHHhhhh
Confidence            344456899999999999987 589998754 689999999999999999999999999998762    3333332    


Q ss_pred             -CCCCChHHHHHHHHHHhccCCCCCcHHHHHhcCC--CCCCccccCHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q 015973          144 -CSVPDWPLLATYLISEASFEKSSRWSNYISALPR--QPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLR  220 (397)
Q Consensus       144 -~~l~~~~~Lal~Ll~E~~~g~~S~w~pYl~~LP~--~~~~pl~w~~~el~~lL~gt~l~~~~~~~~~~~~~~y~~~~~~  220 (397)
                       .++++|..|+++|++|+ .|++|+|+|||++||+  .+++|++|+++|+.++|+||.+...+.++++.++++|..+..+
T Consensus        92 l~~~~~~~~L~l~Ll~E~-~g~~S~W~pYl~~LP~~~~~~~Pl~Ws~eEl~elL~gt~l~~~~~~~~~~i~~~y~~~~~~  170 (449)
T 3qxy_A           92 LQSQSGWVPLLLALLHEL-QAPASRWRPYFALWPELGRLEHPMFWPEEERRCLLQGTGVPEAVEKDLANIRSEYQSIVLP  170 (449)
T ss_dssp             GCCSSSCHHHHHHHHHHH-HCTTCTTHHHHTTSCCGGGCCCGGGSCHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             hccCCcHHHHHHHHHHHH-hCCCCchHHHHHhCCCccCCCCccccCHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence             13567889999999999 5899999999999999  6899999999999667999999999998889999999998778


Q ss_pred             HHhhCCCCCCcccccHHHHHHHHhhhhccceecCCC-------CCceEEeeeeecccCCCCcceeEEeeCCCCeEEEEec
Q 015973          221 IFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSM-------DGRVALVPWADMLNHSCEVETFLDYDKSSQGVVFTTD  293 (397)
Q Consensus       221 l~~~~p~~f~~~~~t~e~f~WA~~~V~SRaf~~~~~-------~~~~~LvP~~Dm~NH~~~~~~~~~~d~~~~~~~l~a~  293 (397)
                      ++..+|+.|+...+|++.|.||+++|+||+|.++..       ....+|||++||+||++.+++.+.|+  ++++++++.
T Consensus       171 ~~~~~p~~f~~~~~t~e~f~wA~~~v~SRsf~~~~~~~~~~~~~~~~~LvP~~D~~NH~~~~~~~~~~~--~~~~~~~a~  248 (449)
T 3qxy_A          171 FMEAHPDLFSLRVRSLELYHQLVALVMAYSFQEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEYS--ANCLRMVAT  248 (449)
T ss_dssp             HHHHCTTTSCGGGCCHHHHHHHHHHHHHHCBCCCCC-----CCCCCCBBCTTGGGCEECSSCSEEEEEC--SSEEEEEES
T ss_pred             HHHhCccccCcccCcHHHHHHHHHHHHHHhcccccCcccccccCCceeEeecHHHhcCCCCCCeEEEEe--CCeEEEEEC
Confidence            888999999888899999999999999999987632       23579999999999999999999886  578999999


Q ss_pred             CcCCCCCeEEecCCCCChHHHHHcCCcccCCCCCCCceEEEecccCC----------CCc-cHHHHHHHHHHCCCCC-cc
Q 015973          294 RQYQPGEQVFISYGKKSNGELLLSYGFVPREGTNPSDSVELPLSLKK----------SDK-CYKEKLEALRKYGLSA-SE  361 (397)
Q Consensus       294 r~i~~GeEv~isYG~~sN~~LL~~YGFv~~~~~Np~D~v~l~~~l~~----------~d~-~~~~k~~~L~~~gl~~-~~  361 (397)
                      ++|++||||||+||+++|++||++|||+++.++||+|.+.|.+.+..          .|+ .++.|.++|+.+|+.. ..
T Consensus       249 ~~i~~Geei~~~YG~~~n~~ll~~YGF~~~~~~N~~D~~~l~~~~~~~~~l~~~~~~~d~~~~~~k~~~L~~~~~~~~~~  328 (449)
T 3qxy_A          249 QPIPKGHEIFNTYGQMANWQLIHMYGFVEPYPDNTDDTADIQMVTVREAALQGTKTEAERHLVYERWDFLCKLEMVGEEG  328 (449)
T ss_dssp             SCBCTTCEEEECCSSCCHHHHHHHHSCCCCTTSCTTCEEEEEHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHTTSCCTTC
T ss_pred             CCcCCCchhhccCCCCCHHHHHHhCCCCCCCCCCCCcEEEEechhhHHHHhhcccccchhHHHHHHHHHHHhCCCCCCCC
Confidence            99999999999999999999999999998634899999999986532          233 5688999999999864 36


Q ss_pred             eeeeecCC-C-cHHHHHHHHHHcCCcchhHHHHh
Q 015973          362 CFPIQITG-W-PLELMAYAYLVVSPPSMKGKFEE  393 (397)
Q Consensus       362 ~f~l~~~~-~-p~~Ll~~lRl~~~~~~e~~~~~~  393 (397)
                      .|.+..++ + +.+|+++||+++++++|++.+..
T Consensus       329 ~f~l~~~~~~~~~~ll~~LR~l~~~~~e~~~~~~  362 (449)
T 3qxy_A          329 AFVIGREEVLTEEELTTTLKVLCMPAEEFRELKD  362 (449)
T ss_dssp             EEEEESSBBSSHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             ceEecCCCCCCCHHHHHHHHHHhCCHHHHHHHHh
Confidence            89998775 4 46899999999999999888754

PyMOL of 3qxy

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}	Back alignment and structure

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}	Back alignment and structure

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}	Back alignment and structure

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		397
d2h2ja2		261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	2e-47
d2h2ja1		176	a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, sub	5e-07
d2g46a1		119	b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Meth	3e-04

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261	Back information, alignment and structure


class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  160 bits (406), Expect = 2e-47
 Identities = 81/262 (30%), Positives = 117/262 (44%), Gaps = 19/262 (7%)

Query: 78  TLQKWLSDSGLPPQKMAIQKVDVGE-RGLVALKNIRKGEKLLFVPPSLVITADSKWSCPE 136
           T  KWL + G+   K  ++   V E  GLVALK+I + + +L VP  L I  D+  +  E
Sbjct: 7   TFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAV-AASE 65

Query: 137 AGEVLKQCSVPDWPLLATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEA 196
            G V  +     W  +  +LI E S  + S W +Y   LP++  S +YW+  EL   L+ 
Sbjct: 66  IGRVCSEL--KPWLSVILFLIRERS-REDSVWKHYFGILPQETDSTIYWSEEELQ-ELQG 121

Query: 197 SQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEEVFNMETFKWSFGILFSRLVRLPSM 256
           SQ+ +  +     V      L   I      LFP+    ++ F W+FGIL SR       
Sbjct: 122 SQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDP-VTLDDFFWAFGILRSRAFSRLRN 180

Query: 257 DGRVALVPWADMLNHSC---------EVETFLDYDKSSQGVVFTTDRQYQPGEQVFISYG 307
           +    +VP AD++NHS          EV+               +    + GEQV+I Y 
Sbjct: 181 ENL-VVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYD 239

Query: 308 -KKSNGELLLSYGFVPREGTNP 328
             KSN EL L YGF+     N 
Sbjct: 240 LNKSNAELALDYGFIE-PNENR 260

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 176	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]} Length = 119	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		397
d2h2ja2		261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	100.0
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	98.34
d2h2ja1		176	RuBisCo LSMT C-terminal, substrate-binding domain	98.22
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	97.69
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	97.2
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	97.12
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	94.77
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	88.77
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	88.48
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	86.71

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=4.5e-45  Score=343.09  Aligned_cols=248  Identities=32%  Similarity=0.516  Sum_probs=206.6

Q ss_pred             hcHHHHHHHHHhCCCCCCCcEEEe-eCCCceEEEEcccCCCCCeEEEcCCCCcccccCCcCCchhhhhhccCCCCChHHH
Q 015973           74 ENASTLQKWLSDSGLPPQKMAIQK-VDVGERGLVALKNIRKGEKLLFVPPSLVITADSKWSCPEAGEVLKQCSVPDWPLL  152 (397)
Q Consensus        74 ~~~~~l~~Wl~~~G~~~~~v~i~~-~~~~GrGl~A~~~I~~ge~ll~IP~~~~is~~~~~~~~~~~~~l~~~~l~~~~~L  152 (397)
                      .+.+.|++|++++|+..+++.+.. ..+.||||+|+++|++||+|++||.+++|+.+++..+ ..+..+.  ...++..|
T Consensus         3 ~~~~~~~~W~~~~g~~~~~~~~~~~~~~~GrGl~AtrdI~~Ge~il~vP~~~~lt~~~~~~~-~~~~~~~--~~~~~~~l   79 (261)
T d2h2ja2           3 PAVQTFWKWLQEEGVITAKTPVKASVVTEGLGLVALKDISRNDVILQVPKRLWINPDAVAAS-EIGRVCS--ELKPWLSV   79 (261)
T ss_dssp             HHHHHHHHHHHTTTSSCSSCCCEEEEETTEEEEECSSCCCTTCEEEEEEGGGCCSHHHHHTS-GGGTTTT--TSCHHHHH
T ss_pred             hHHHHHHHHHHHCCCccCCceEeecCCCceeEEEECCcCCCCCEEEEeChHHhccHHHhhhh-HHHHHHh--hcCcHHHH
Confidence            357889999999999988888765 4467999999999999999999999999998765332 2233322  34567889


Q ss_pred             HHHHHHHhccCCCCCcHHHHHhcCCCCCCccccCHHHHHHhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCcc
Q 015973          153 ATYLISEASFEKSSRWSNYISALPRQPYSLLYWTRAELDRYLEASQIRERAIERITNVIGTYNDLRLRIFSKYPDLFPEE  232 (397)
Q Consensus       153 al~Ll~E~~~g~~S~w~pYl~~LP~~~~~pl~w~~~el~~lL~gt~l~~~~~~~~~~~~~~y~~~~~~l~~~~p~~f~~~  232 (397)
                      +++|++|+. +..|.|++|+++||+...+|++|+.++++ .|+++.+...+....+.+..+|.++...+....++.+. .
T Consensus        80 ~~~l~~e~~-~~~s~~~~y~~~lp~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  156 (261)
T d2h2ja2          80 ILFLIRERS-REDSVWKHYFGILPQETDSTIYWSEEELQ-ELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFP-D  156 (261)
T ss_dssp             HHHHHHHHH-CTTCTTHHHHTTSCSCCSCGGGCCHHHHH-TTTTCHHHHHHHHHHHHHHHHHHHHHHHTTTTTTTTCC-S
T ss_pred             HHHHHHHHh-CCCCchhhhhhccccccCCcccCCHHHHH-HcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc-C
Confidence            999999985 88999999999999999999999999998 58999999988888888999999887766655555544 3


Q ss_pred             cccHHHHHHHHhhhhccceecCCCCCceEEeeeeecccCCCCcceeEEeeC---------CCCeEEEEecCcCCCCCeEE
Q 015973          233 VFNMETFKWSFGILFSRLVRLPSMDGRVALVPWADMLNHSCEVETFLDYDK---------SSQGVVFTTDRQYQPGEQVF  303 (397)
Q Consensus       233 ~~t~e~f~WA~~~V~SRaf~~~~~~~~~~LvP~~Dm~NH~~~~~~~~~~d~---------~~~~~~l~a~r~i~~GeEv~  303 (397)
                      .++++.|.||+++|.||+|..+... ..+|+|++||+||++.+|+.+.++.         .++.++++|.|+|++|||||
T Consensus       157 ~~~~~~~~~a~~~v~sr~~~~~~~~-~~~l~P~~d~~NHsc~pn~~~~~~~~~~~~~~~~~~~~~~l~A~r~I~~GEEI~  235 (261)
T d2h2ja2         157 PVTLDDFFWAFGILRSRAFSRLRNE-NLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVY  235 (261)
T ss_dssp             CCCHHHHHHHHHHHHHHSBCCC----CCBCCTTGGGCEECSSCCSCCCCCC-----------CEEEEECSSCCCTTSBCE
T ss_pred             ccCHHHHHHHHHHhhcccccccccc-cccchhhhHHhhcCCCCCcccccccccCcccccCCCcEEEEEECCCCCCCCEEE
Confidence            5899999999999999999886543 4789999999999999998765542         34678999999999999999


Q ss_pred             ecCCC-CChHHHHHcCCcccCCCCCCC
Q 015973          304 ISYGK-KSNGELLLSYGFVPREGTNPS  329 (397)
Q Consensus       304 isYG~-~sN~~LL~~YGFv~~~~~Np~  329 (397)
                      |+||. ++|++||.+||||++ ++|||
T Consensus       236 isYG~~~~n~~ll~~yGFv~~-~~n~~  261 (261)
T d2h2ja2         236 IQYDLNKSNAELALDYGFIEP-NENRH  261 (261)
T ss_dssp             ECSCSSCCHHHHHHHSSCCCS-CGGGC
T ss_pred             EecCCCCCHHHHHHhCCCCCC-CCCCC
Confidence            99995 799999999999986 45886

PyMOL of d2h2ja2

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure