Query 015974
Match_columns 397
No_of_seqs 360 out of 2104
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 02:38:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015974.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015974hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 99.9 2.4E-26 5.3E-31 230.2 15.8 143 224-396 106-249 (346)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 4.9E-25 1.1E-29 219.4 16.1 142 225-396 3-145 (352)
3 TIGR01622 SF-CC1 splicing fact 99.9 1.1E-24 2.5E-29 224.5 17.0 155 221-396 85-242 (457)
4 TIGR01645 half-pint poly-U bin 99.9 8.8E-25 1.9E-29 230.9 16.4 152 224-396 106-260 (612)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.9 9E-23 1.9E-27 203.1 17.0 151 225-396 89-325 (352)
6 TIGR01628 PABP-1234 polyadenyl 99.9 5E-23 1.1E-27 218.2 15.8 141 227-396 2-143 (562)
7 TIGR01642 U2AF_lg U2 snRNP aux 99.9 3.9E-22 8.4E-27 208.3 16.3 162 220-396 170-351 (509)
8 KOG0148 Apoptosis-promoting RN 99.9 7.6E-22 1.6E-26 186.4 13.0 144 225-395 62-213 (321)
9 TIGR01628 PABP-1234 polyadenyl 99.9 6.4E-21 1.4E-25 202.1 15.4 149 225-396 178-340 (562)
10 KOG0144 RNA-binding protein CU 99.8 3.1E-21 6.8E-26 191.6 10.0 148 219-396 28-179 (510)
11 TIGR01648 hnRNP-R-Q heterogene 99.8 8.8E-21 1.9E-25 200.2 13.8 137 225-396 58-196 (578)
12 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 4E-20 8.8E-25 193.0 16.3 141 225-396 2-148 (481)
13 KOG0117 Heterogeneous nuclear 99.8 2.8E-20 6E-25 185.6 13.4 137 224-395 82-221 (506)
14 KOG0127 Nucleolar protein fibr 99.8 4E-20 8.7E-25 188.0 13.5 150 225-396 117-348 (678)
15 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.8 1.1E-19 2.5E-24 189.6 16.3 146 223-396 273-450 (481)
16 KOG0131 Splicing factor 3b, su 99.8 2.8E-20 6.1E-25 167.1 9.4 144 223-395 7-152 (203)
17 KOG0145 RNA-binding protein EL 99.8 4.4E-20 9.5E-25 173.6 10.2 143 225-397 41-184 (360)
18 TIGR01642 U2AF_lg U2 snRNP aux 99.8 2.7E-19 5.8E-24 186.9 16.5 152 224-396 294-478 (509)
19 KOG0127 Nucleolar protein fibr 99.8 1.5E-19 3.4E-24 183.8 11.9 149 226-396 6-172 (678)
20 KOG0124 Polypyrimidine tract-b 99.8 1.6E-18 3.4E-23 169.4 9.7 149 225-394 113-264 (544)
21 KOG0110 RNA-binding protein (R 99.8 2.9E-18 6.3E-23 179.2 11.2 150 228-395 518-668 (725)
22 KOG4205 RNA-binding protein mu 99.8 3.1E-18 6.7E-23 168.5 10.5 148 224-395 5-152 (311)
23 KOG0145 RNA-binding protein EL 99.7 1.3E-17 2.7E-22 157.2 11.0 150 225-395 127-333 (360)
24 KOG0117 Heterogeneous nuclear 99.7 1.5E-17 3.3E-22 166.2 11.5 142 223-396 162-307 (506)
25 KOG0123 Polyadenylate-binding 99.7 2.1E-17 4.6E-22 167.0 12.1 127 226-396 2-129 (369)
26 TIGR01648 hnRNP-R-Q heterogene 99.7 4.3E-17 9.3E-22 172.4 14.4 142 225-396 138-283 (578)
27 TIGR01622 SF-CC1 splicing fact 99.7 9.8E-17 2.1E-21 165.6 16.4 147 225-396 186-424 (457)
28 KOG0147 Transcriptional coacti 99.7 2.3E-18 4.9E-23 175.9 3.1 155 220-396 174-334 (549)
29 KOG0109 RNA-binding protein LA 99.7 8E-17 1.7E-21 153.8 9.3 123 227-397 4-127 (346)
30 KOG0123 Polyadenylate-binding 99.7 3.9E-16 8.4E-21 157.8 11.7 144 226-395 77-221 (369)
31 KOG0105 Alternative splicing f 99.6 8.4E-15 1.8E-19 132.3 11.5 141 223-394 4-162 (241)
32 PLN03134 glycine-rich RNA-bind 99.6 1.5E-14 3.3E-19 128.2 11.5 82 223-321 32-114 (144)
33 KOG4211 Splicing factor hnRNP- 99.6 2E-14 4.4E-19 145.6 13.7 149 224-396 9-159 (510)
34 KOG0146 RNA-binding protein ET 99.6 1.2E-14 2.5E-19 137.7 10.6 57 336-396 285-341 (371)
35 COG0724 RNA-binding proteins ( 99.5 9.8E-14 2.1E-18 128.6 13.3 143 225-388 115-273 (306)
36 KOG4206 Spliceosomal protein s 99.5 1.1E-13 2.4E-18 128.6 12.4 141 225-394 9-195 (221)
37 KOG0144 RNA-binding protein CU 99.5 6.6E-14 1.4E-18 139.8 8.5 76 225-318 124-203 (510)
38 PF00076 RRM_1: RNA recognitio 99.5 2.2E-13 4.8E-18 103.5 9.0 69 228-314 1-70 (70)
39 KOG0148 Apoptosis-promoting RN 99.5 1.5E-13 3.2E-18 130.5 7.9 114 224-396 5-118 (321)
40 PLN03120 nucleic acid binding 99.4 4.3E-13 9.4E-18 128.5 9.8 76 225-320 4-79 (260)
41 KOG0129 Predicted RNA-binding 99.4 1.6E-12 3.4E-17 132.7 12.9 156 222-393 256-424 (520)
42 KOG0121 Nuclear cap-binding pr 99.4 4.1E-13 9E-18 114.9 6.8 80 223-319 34-114 (153)
43 PF14259 RRM_6: RNA recognitio 99.4 3.5E-12 7.6E-17 97.9 9.0 69 228-314 1-70 (70)
44 KOG0149 Predicted RNA-binding 99.3 1.8E-12 3.8E-17 121.2 7.2 79 225-320 12-90 (247)
45 PLN03121 nucleic acid binding 99.3 5.4E-12 1.2E-16 119.4 9.9 76 225-320 5-80 (243)
46 KOG0126 Predicted RNA-binding 99.3 3E-13 6.5E-18 122.0 1.0 82 222-320 32-114 (219)
47 TIGR01645 half-pint poly-U bin 99.3 2E-11 4.3E-16 130.0 12.0 82 224-322 203-285 (612)
48 KOG4212 RNA-binding protein hn 99.3 3E-11 6.5E-16 121.1 12.3 149 225-396 44-270 (608)
49 KOG1457 RNA binding protein (c 99.3 5.3E-11 1.1E-15 110.6 12.8 153 220-396 29-262 (284)
50 KOG0107 Alternative splicing f 99.2 1.4E-11 3E-16 110.8 7.1 75 225-321 10-85 (195)
51 PLN03213 repressor of silencin 99.2 2.1E-11 4.6E-16 123.7 9.3 75 225-320 10-87 (759)
52 TIGR01659 sex-lethal sex-letha 99.2 3.2E-11 7E-16 121.3 10.4 80 225-321 193-275 (346)
53 KOG0113 U1 small nuclear ribon 99.2 3.5E-11 7.5E-16 115.8 8.9 79 224-319 100-179 (335)
54 KOG0125 Ataxin 2-binding prote 99.2 3.5E-11 7.5E-16 117.1 8.8 78 225-321 96-174 (376)
55 smart00362 RRM_2 RNA recogniti 99.2 8.1E-11 1.7E-15 88.0 9.0 71 227-316 1-72 (72)
56 KOG0122 Translation initiation 99.2 5.4E-11 1.2E-15 111.8 9.3 83 222-321 186-269 (270)
57 KOG0106 Alternative splicing f 99.2 3.5E-11 7.6E-16 112.6 6.4 132 227-395 3-146 (216)
58 KOG0110 RNA-binding protein (R 99.2 7.6E-11 1.6E-15 124.2 8.8 148 221-396 381-574 (725)
59 KOG0114 Predicted RNA-binding 99.2 1.3E-10 2.8E-15 96.4 8.1 77 225-321 18-95 (124)
60 smart00360 RRM RNA recognition 99.2 1.6E-10 3.5E-15 85.9 8.0 70 230-316 1-71 (71)
61 KOG0147 Transcriptional coacti 99.2 1.6E-10 3.4E-15 119.0 10.6 76 226-318 279-355 (549)
62 KOG4207 Predicted splicing fac 99.1 9.2E-11 2E-15 107.9 6.1 78 225-319 13-91 (256)
63 cd00590 RRM RRM (RNA recogniti 99.1 5.9E-10 1.3E-14 83.7 9.4 73 227-317 1-74 (74)
64 PLN03134 glycine-rich RNA-bind 99.1 1.2E-10 2.6E-15 103.3 6.0 59 334-396 32-90 (144)
65 KOG1548 Transcription elongati 99.1 1.2E-09 2.7E-14 107.1 13.0 156 222-396 131-328 (382)
66 KOG0111 Cyclophilin-type pepti 99.1 7.8E-11 1.7E-15 109.3 4.1 82 224-322 9-91 (298)
67 KOG0130 RNA-binding protein RB 99.1 2.2E-10 4.8E-15 99.1 5.8 78 225-319 72-150 (170)
68 KOG0149 Predicted RNA-binding 99.0 2.7E-10 5.8E-15 106.7 4.9 57 336-396 12-68 (247)
69 KOG1190 Polypyrimidine tract-b 99.0 4.9E-09 1.1E-13 104.8 13.2 142 225-396 297-466 (492)
70 KOG0108 mRNA cleavage and poly 99.0 1.2E-09 2.6E-14 112.3 7.5 78 226-320 19-97 (435)
71 PF00076 RRM_1: RNA recognitio 98.9 7.8E-10 1.7E-14 83.8 4.4 53 339-396 1-53 (70)
72 KOG1365 RNA-binding protein Fu 98.9 2.1E-09 4.5E-14 106.6 6.8 150 225-396 161-338 (508)
73 PF14259 RRM_6: RNA recognitio 98.9 2.1E-09 4.5E-14 82.4 4.8 53 339-396 1-53 (70)
74 PF13893 RRM_5: RNA recognitio 98.8 1.4E-08 3.1E-13 75.0 7.3 55 242-318 1-56 (56)
75 KOG4210 Nuclear localization s 98.8 2.5E-09 5.5E-14 104.9 3.9 151 224-395 87-240 (285)
76 KOG0122 Translation initiation 98.8 5.5E-09 1.2E-13 98.5 5.6 60 333-396 186-245 (270)
77 KOG4211 Splicing factor hnRNP- 98.8 4.5E-08 9.8E-13 100.0 11.7 149 224-396 102-335 (510)
78 KOG0121 Nuclear cap-binding pr 98.8 6.4E-09 1.4E-13 89.4 4.0 58 335-396 35-92 (153)
79 KOG0128 RNA-binding protein SA 98.7 7.7E-10 1.7E-14 118.6 -2.2 128 222-396 664-791 (881)
80 KOG4454 RNA binding protein (R 98.7 2E-09 4.4E-14 100.0 0.8 124 225-390 9-133 (267)
81 smart00361 RRM_1 RNA recogniti 98.7 3.7E-08 8.1E-13 76.4 7.7 62 239-315 2-69 (70)
82 KOG0126 Predicted RNA-binding 98.7 4.4E-09 9.5E-14 95.3 1.8 58 333-394 32-89 (219)
83 KOG0415 Predicted peptidyl pro 98.7 2.4E-08 5.3E-13 98.3 6.8 82 222-320 236-318 (479)
84 KOG0153 Predicted RNA-binding 98.7 4.5E-08 9.7E-13 96.3 8.4 77 222-321 225-303 (377)
85 KOG0132 RNA polymerase II C-te 98.7 3.1E-08 6.8E-13 105.5 7.0 77 222-321 418-495 (894)
86 smart00362 RRM_2 RNA recogniti 98.6 6.6E-08 1.4E-12 72.0 5.4 53 338-396 1-53 (72)
87 KOG0113 U1 small nuclear ribon 98.6 5.7E-08 1.2E-12 93.9 5.9 58 333-394 98-155 (335)
88 COG0724 RNA-binding proteins ( 98.6 5.3E-08 1.1E-12 90.2 5.4 57 336-396 115-171 (306)
89 KOG0120 Splicing factor U2AF, 98.6 1.2E-07 2.7E-12 98.5 8.5 149 224-396 288-468 (500)
90 KOG1365 RNA-binding protein Fu 98.6 4.5E-07 9.8E-12 90.3 11.1 154 225-396 60-220 (508)
91 smart00360 RRM RNA recognition 98.6 1.1E-07 2.4E-12 70.3 5.2 52 341-396 1-52 (71)
92 KOG0125 Ataxin 2-binding prote 98.5 6.9E-08 1.5E-12 94.4 4.8 58 333-396 93-150 (376)
93 KOG4205 RNA-binding protein mu 98.5 1.9E-07 4E-12 92.6 7.3 83 225-324 97-179 (311)
94 KOG0120 Splicing factor U2AF, 98.5 2.1E-07 4.5E-12 96.8 7.6 146 221-393 171-342 (500)
95 KOG0131 Splicing factor 3b, su 98.5 1.1E-07 2.4E-12 86.2 4.8 79 226-321 97-177 (203)
96 KOG4208 Nucleolar RNA-binding 98.5 3.2E-07 7E-12 84.8 7.6 79 225-320 49-129 (214)
97 KOG0112 Large RNA-binding prot 98.5 7E-08 1.5E-12 104.3 3.7 138 220-396 367-505 (975)
98 KOG0109 RNA-binding protein LA 98.5 1.3E-07 2.8E-12 91.2 4.6 74 223-321 76-150 (346)
99 KOG0146 RNA-binding protein ET 98.5 2.2E-07 4.8E-12 88.7 5.8 83 222-321 282-365 (371)
100 KOG4661 Hsp27-ERE-TATA-binding 98.4 3.3E-07 7.3E-12 94.9 7.0 81 222-319 402-483 (940)
101 cd00590 RRM RRM (RNA recogniti 98.4 4.2E-07 9.1E-12 67.9 5.4 54 338-396 1-54 (74)
102 KOG4207 Predicted splicing fac 98.4 2.3E-07 5.1E-12 85.7 4.5 63 330-396 7-69 (256)
103 PLN03213 repressor of silencin 98.4 2.9E-07 6.4E-12 94.1 5.0 49 336-392 10-58 (759)
104 KOG0114 Predicted RNA-binding 98.4 4.6E-07 9.9E-12 75.5 4.7 56 334-396 16-71 (124)
105 KOG0124 Polypyrimidine tract-b 98.4 8.5E-07 1.8E-11 87.9 7.0 79 224-319 209-288 (544)
106 KOG4209 Splicing factor RNPS1, 98.3 6E-07 1.3E-11 85.7 5.6 79 224-319 100-178 (231)
107 KOG1190 Polypyrimidine tract-b 98.3 8.4E-07 1.8E-11 89.0 6.0 142 224-396 27-202 (492)
108 KOG0116 RasGAP SH3 binding pro 98.3 1.2E-06 2.5E-11 90.0 7.1 81 222-319 285-365 (419)
109 KOG1456 Heterogeneous nuclear 98.3 6.2E-06 1.4E-10 82.1 11.0 149 222-397 284-462 (494)
110 KOG0108 mRNA cleavage and poly 98.3 7.9E-07 1.7E-11 91.7 4.8 56 337-396 19-74 (435)
111 KOG0151 Predicted splicing reg 98.3 2.2E-06 4.7E-11 91.0 7.8 90 216-319 165-255 (877)
112 KOG0107 Alternative splicing f 98.2 1.1E-06 2.4E-11 79.5 4.5 52 336-396 10-61 (195)
113 KOG4212 RNA-binding protein hn 98.2 1.9E-06 4.1E-11 87.2 6.4 74 222-317 533-607 (608)
114 KOG0533 RRM motif-containing p 98.2 3.3E-06 7.2E-11 80.9 7.6 79 225-321 83-162 (243)
115 KOG0111 Cyclophilin-type pepti 98.2 9.1E-07 2E-11 82.6 2.4 58 334-395 8-65 (298)
116 KOG4676 Splicing factor, argin 98.1 1.2E-06 2.5E-11 87.6 2.2 144 226-391 8-198 (479)
117 KOG4660 Protein Mei2, essentia 98.1 4.1E-06 8.9E-11 87.0 6.0 71 222-314 72-143 (549)
118 KOG4208 Nucleolar RNA-binding 98.0 6.7E-06 1.5E-10 76.1 5.1 61 333-396 46-106 (214)
119 KOG0105 Alternative splicing f 98.0 5.9E-06 1.3E-10 75.4 4.6 55 335-396 5-59 (241)
120 KOG0130 RNA-binding protein RB 98.0 3.7E-06 8.1E-11 73.2 2.8 58 335-396 71-128 (170)
121 smart00361 RRM_1 RNA recogniti 97.8 3.1E-05 6.7E-10 59.9 4.1 43 350-396 2-51 (70)
122 PF04059 RRM_2: RNA recognitio 97.7 0.0002 4.3E-09 59.5 9.0 77 226-319 2-85 (97)
123 KOG0226 RNA-binding proteins [ 97.7 3.6E-05 7.8E-10 73.4 4.7 79 225-320 190-269 (290)
124 KOG1456 Heterogeneous nuclear 97.7 0.00021 4.6E-09 71.4 9.3 139 224-396 30-173 (494)
125 KOG0415 Predicted peptidyl pro 97.7 2.8E-05 6.2E-10 77.0 3.1 60 333-396 236-295 (479)
126 PF11608 Limkain-b1: Limkain b 97.6 0.00017 3.7E-09 58.1 6.8 67 226-319 3-75 (90)
127 PF04059 RRM_2: RNA recognitio 97.5 0.00012 2.6E-09 60.9 4.7 58 337-396 2-59 (97)
128 KOG0153 Predicted RNA-binding 97.5 0.0001 2.3E-09 73.0 4.0 53 334-396 226-278 (377)
129 KOG2193 IGF-II mRNA-binding pr 97.4 6.7E-05 1.5E-09 75.9 2.2 109 227-373 3-113 (584)
130 KOG0128 RNA-binding protein SA 97.4 2E-05 4.3E-10 85.5 -1.8 149 226-396 572-723 (881)
131 KOG0226 RNA-binding proteins [ 97.4 0.00017 3.7E-09 68.9 4.7 145 226-395 97-245 (290)
132 KOG4307 RNA binding protein RB 97.4 0.00029 6.4E-09 75.1 6.7 148 224-395 310-489 (944)
133 PLN03121 nucleic acid binding 97.4 0.00016 3.5E-09 69.0 3.8 38 335-376 4-41 (243)
134 KOG4210 Nuclear localization s 97.3 0.00014 3.1E-09 71.6 2.8 81 224-321 183-264 (285)
135 PLN03120 nucleic acid binding 97.2 0.00025 5.4E-09 68.6 3.8 38 336-377 4-41 (260)
136 KOG4206 Spliceosomal protein s 97.2 0.00042 9.2E-09 65.1 5.3 54 335-395 8-65 (221)
137 KOG0132 RNA polymerase II C-te 97.2 0.0003 6.5E-09 75.9 4.0 51 336-396 421-471 (894)
138 COG5175 MOT2 Transcriptional r 97.2 0.00069 1.5E-08 67.1 6.2 81 225-319 114-201 (480)
139 KOG0116 RasGAP SH3 binding pro 97.1 0.00043 9.3E-09 71.4 4.5 57 336-396 288-344 (419)
140 KOG1995 Conserved Zn-finger pr 97.1 0.00069 1.5E-08 67.6 4.8 89 223-320 64-153 (351)
141 KOG4209 Splicing factor RNPS1, 97.0 0.00035 7.7E-09 66.8 2.7 58 335-396 100-157 (231)
142 PF05172 Nup35_RRM: Nup53/35/4 97.0 0.0034 7.3E-08 52.5 7.8 82 225-318 6-89 (100)
143 PF13893 RRM_5: RNA recognitio 97.0 0.00078 1.7E-08 49.4 3.6 35 353-396 1-35 (56)
144 KOG0533 RRM motif-containing p 96.9 0.00098 2.1E-08 64.1 4.0 56 336-396 83-138 (243)
145 KOG1457 RNA binding protein (c 96.9 0.0011 2.3E-08 62.6 4.0 66 222-308 207-273 (284)
146 KOG4661 Hsp27-ERE-TATA-binding 96.8 0.0014 3E-08 68.8 4.4 56 336-395 405-460 (940)
147 KOG4307 RNA binding protein RB 96.8 0.0034 7.3E-08 67.3 7.3 75 225-317 867-943 (944)
148 PF08777 RRM_3: RNA binding mo 96.8 0.0044 9.6E-08 52.2 6.7 53 226-301 2-54 (105)
149 KOG1855 Predicted RNA-binding 96.7 0.0023 5E-08 65.2 5.4 82 216-304 222-306 (484)
150 PF14605 Nup35_RRM_2: Nup53/35 96.7 0.0038 8.2E-08 46.0 5.1 52 226-301 2-53 (53)
151 KOG0106 Alternative splicing f 96.7 0.0012 2.6E-08 62.3 2.8 71 223-318 97-168 (216)
152 KOG3152 TBP-binding protein, a 96.4 0.0032 7E-08 60.4 4.1 80 224-312 73-157 (278)
153 KOG1548 Transcription elongati 96.4 0.013 2.8E-07 58.4 8.1 78 222-320 262-351 (382)
154 PF08777 RRM_3: RNA binding mo 96.3 0.0044 9.5E-08 52.2 3.6 50 337-396 2-51 (105)
155 KOG4454 RNA binding protein (R 96.2 0.0034 7.4E-08 59.0 3.0 56 334-395 7-62 (267)
156 KOG0129 Predicted RNA-binding 96.2 0.013 2.9E-07 61.0 7.3 78 223-318 368-451 (520)
157 KOG4849 mRNA cleavage factor I 95.8 0.0085 1.8E-07 59.8 3.6 77 225-318 80-159 (498)
158 KOG0151 Predicted splicing reg 95.5 0.011 2.3E-07 63.8 3.4 58 335-396 173-233 (877)
159 PF08952 DUF1866: Domain of un 95.5 0.042 9.2E-07 48.9 6.6 73 223-320 25-106 (146)
160 KOG4660 Protein Mei2, essentia 95.4 0.0083 1.8E-07 63.0 2.1 55 333-396 72-126 (549)
161 KOG2314 Translation initiation 95.4 0.028 6.1E-07 59.2 5.9 75 225-317 58-140 (698)
162 KOG0112 Large RNA-binding prot 95.3 0.022 4.8E-07 62.8 4.9 76 223-321 453-531 (975)
163 KOG1996 mRNA splicing factor [ 95.2 0.047 1E-06 53.5 6.5 65 239-319 300-365 (378)
164 PF08675 RNA_bind: RNA binding 95.0 0.099 2.2E-06 42.3 6.8 52 225-302 9-60 (87)
165 PF03467 Smg4_UPF3: Smg-4/UPF3 93.8 0.067 1.4E-06 49.1 3.9 73 225-309 7-81 (176)
166 KOG2416 Acinus (induces apopto 93.8 0.042 9.1E-07 58.3 2.8 74 222-318 441-519 (718)
167 KOG0115 RNA-binding protein p5 93.1 0.092 2E-06 50.6 3.6 77 298-395 8-85 (275)
168 KOG2202 U2 snRNP splicing fact 92.8 0.052 1.1E-06 52.3 1.5 61 240-318 83-145 (260)
169 PF14605 Nup35_RRM_2: Nup53/35 92.4 0.16 3.4E-06 37.4 3.3 49 337-396 2-50 (53)
170 PF10309 DUF2414: Protein of u 92.0 0.69 1.5E-05 35.3 6.5 51 225-301 5-59 (62)
171 KOG2135 Proteins containing th 91.8 0.08 1.7E-06 54.9 1.6 75 223-320 370-445 (526)
172 KOG1995 Conserved Zn-finger pr 91.4 0.15 3.2E-06 51.3 2.8 58 335-396 65-130 (351)
173 PF15023 DUF4523: Protein of u 90.8 0.54 1.2E-05 41.8 5.4 72 224-319 85-160 (166)
174 KOG1855 Predicted RNA-binding 90.8 0.32 7E-06 50.0 4.6 58 335-396 230-300 (484)
175 KOG4849 mRNA cleavage factor I 90.6 0.087 1.9E-06 52.8 0.5 57 336-394 80-136 (498)
176 KOG2068 MOT2 transcription fac 90.1 0.16 3.4E-06 50.7 1.7 82 225-320 77-162 (327)
177 KOG4285 Mitotic phosphoprotein 89.6 1.1 2.5E-05 44.3 7.1 71 225-319 197-268 (350)
178 KOG4676 Splicing factor, argin 89.2 0.34 7.4E-06 49.3 3.3 55 337-395 8-65 (479)
179 KOG0115 RNA-binding protein p5 87.7 0.63 1.4E-05 45.0 3.9 59 226-302 32-90 (275)
180 PF11608 Limkain-b1: Limkain b 87.1 0.71 1.5E-05 37.6 3.3 47 337-396 3-53 (90)
181 PF07292 NID: Nmi/IFP 35 domai 86.9 0.44 9.5E-06 39.0 2.1 70 287-358 1-74 (88)
182 PF08675 RNA_bind: RNA binding 84.7 1.5 3.3E-05 35.6 4.1 46 337-395 10-55 (87)
183 KOG2314 Translation initiation 80.5 1.5 3.2E-05 46.8 3.3 55 337-396 59-119 (698)
184 PF04847 Calcipressin: Calcipr 79.9 4 8.7E-05 37.8 5.6 60 238-320 8-70 (184)
185 PF07576 BRAP2: BRCA1-associat 79.5 16 0.00035 31.0 8.7 67 225-310 13-81 (110)
186 PF03467 Smg4_UPF3: Smg-4/UPF3 78.5 1.3 2.9E-05 40.6 2.0 56 336-395 7-68 (176)
187 KOG0804 Cytoplasmic Zn-finger 76.6 13 0.00027 39.0 8.5 67 225-310 74-142 (493)
188 KOG4483 Uncharacterized conser 76.2 5.3 0.00011 41.1 5.6 66 224-313 390-456 (528)
189 KOG3152 TBP-binding protein, a 73.9 3.1 6.6E-05 40.4 3.1 39 336-378 74-112 (278)
190 PF14111 DUF4283: Domain of un 72.4 5.8 0.00013 34.4 4.4 83 285-374 56-139 (153)
191 PF07576 BRAP2: BRCA1-associat 71.0 11 0.00023 32.1 5.5 57 336-397 13-69 (110)
192 KOG2416 Acinus (induces apopto 70.4 1.3 2.8E-05 47.4 -0.2 56 332-396 440-495 (718)
193 KOG2591 c-Mpl binding protein, 68.6 9 0.00019 41.0 5.4 68 223-314 173-245 (684)
194 PF10567 Nab6_mRNP_bdg: RNA-re 67.9 38 0.00083 33.7 9.2 163 223-397 13-206 (309)
195 KOG4574 RNA-binding protein (c 67.5 4 8.6E-05 45.6 2.7 72 226-320 299-373 (1007)
196 KOG2253 U1 snRNP complex, subu 66.8 3.2 6.9E-05 45.0 1.7 109 224-359 39-158 (668)
197 PF11767 SET_assoc: Histone ly 65.5 36 0.00079 26.3 6.9 54 236-315 11-65 (66)
198 KOG4410 5-formyltetrahydrofola 55.7 12 0.00026 37.0 3.4 49 224-295 329-378 (396)
199 COG5175 MOT2 Transcriptional r 54.5 12 0.00026 37.9 3.2 56 336-395 114-178 (480)
200 KOG2318 Uncharacterized conser 51.9 31 0.00067 37.3 5.9 92 223-317 172-302 (650)
201 PF05172 Nup35_RRM: Nup53/35/4 47.1 28 0.00062 29.0 3.9 56 336-396 6-68 (100)
202 KOG2591 c-Mpl binding protein, 46.1 48 0.001 35.7 6.2 50 336-396 175-226 (684)
203 KOG2891 Surface glycoprotein [ 45.5 16 0.00034 36.1 2.4 34 225-258 149-194 (445)
204 PF03880 DbpA: DbpA RNA bindin 43.7 29 0.00064 26.8 3.3 57 236-318 12-74 (74)
205 KOG0804 Cytoplasmic Zn-finger 43.2 26 0.00057 36.7 3.7 56 336-396 74-129 (493)
206 KOG4410 5-formyltetrahydrofola 40.1 43 0.00093 33.3 4.4 51 336-395 330-380 (396)
207 PF10309 DUF2414: Protein of u 39.6 48 0.001 25.3 3.8 51 337-396 6-56 (62)
208 KOG2891 Surface glycoprotein [ 37.8 49 0.0011 32.7 4.5 52 334-389 147-215 (445)
209 KOG0156 Cytochrome P450 CYP2 s 31.9 65 0.0014 34.3 4.7 59 228-313 35-97 (489)
210 PF03468 XS: XS domain; Inter 29.4 49 0.0011 28.3 2.7 58 227-304 10-77 (116)
211 KOG1295 Nonsense-mediated deca 27.3 81 0.0018 32.4 4.2 72 225-310 7-79 (376)
212 KOG2068 MOT2 transcription fac 26.0 45 0.00098 33.6 2.1 55 336-395 77-138 (327)
213 KOG2253 U1 snRNP complex, subu 24.9 32 0.0007 37.6 0.9 49 333-394 37-85 (668)
214 KOG4008 rRNA processing protei 24.4 60 0.0013 31.4 2.5 36 222-257 37-72 (261)
215 KOG2135 Proteins containing th 22.8 62 0.0013 34.2 2.5 49 337-395 373-422 (526)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.94 E-value=2.4e-26 Score=230.21 Aligned_cols=143 Identities=20% Similarity=0.334 Sum_probs=128.3
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+++|+++|+++|+.||.|.+|+|+.+. .++.++|||||+|.++++|..|| .
T Consensus 106 ~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~-----------------~tg~srGyaFVeF~~~e~A~~Ai~~ 168 (346)
T TIGR01659 106 SGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDY-----------------KTGYSFGYAFVDFGSEADSQRAIKN 168 (346)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC-----------------CCCccCcEEEEEEccHHHHHHHHHH
Confidence 46889999999999999999999999999999997754 34567899999999999999999 6
Q ss_pred hcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCc
Q 015974 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~k 382 (397)
||+..|.+++|.|.++.+... .....+|||+|||..+|+++|+++|+.| |.|..|+|+++..++.++
T Consensus 169 LnG~~l~gr~i~V~~a~p~~~---------~~~~~~lfV~nLp~~vtee~L~~~F~~f----G~V~~v~i~~d~~tg~~k 235 (346)
T TIGR01659 169 LNGITVRNKRLKVSYARPGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKY----GQIVQKNILRDKLTGTPR 235 (346)
T ss_pred cCCCccCCceeeeeccccccc---------ccccceeEEeCCCCcccHHHHHHHHHhc----CCEEEEEEeecCCCCccc
Confidence 999999999999999865321 1134689999999999999999999999 999999999999899999
Q ss_pred cEEEEEeccccccc
Q 015974 383 GIAYVLFKTRDNWI 396 (397)
Q Consensus 383 GfAFV~F~s~e~A~ 396 (397)
|||||+|.+.++|+
T Consensus 236 G~aFV~F~~~e~A~ 249 (346)
T TIGR01659 236 GVAFVRFNKREEAQ 249 (346)
T ss_pred eEEEEEECCHHHHH
Confidence 99999999998885
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.93 E-value=4.9e-25 Score=219.39 Aligned_cols=142 Identities=18% Similarity=0.327 Sum_probs=127.6
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
..+|||+|||+.+|+++|+++|+.||+|.+|+|++++ .+|.++|||||+|.+.++|..|| .|
T Consensus 3 ~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~-----------------~~g~s~g~afV~f~~~~~A~~Ai~~l 65 (352)
T TIGR01661 3 KTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDK-----------------VTGQSLGYGFVNYVRPEDAEKAVNSL 65 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcC-----------------CCCccceEEEEEECcHHHHHHHHhhc
Confidence 5789999999999999999999999999999998764 24567899999999999999999 69
Q ss_pred cCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCcc
Q 015974 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kG 383 (397)
||..|.|+.|.|.++.+... .....+|||+|||..+++++|+.+|+.| |.|..++++.+..++.++|
T Consensus 66 ~g~~l~g~~i~v~~a~~~~~---------~~~~~~l~v~~l~~~~~~~~l~~~f~~~----G~i~~~~~~~~~~~~~~~g 132 (352)
T TIGR01661 66 NGLRLQNKTIKVSYARPSSD---------SIKGANLYVSGLPKTMTQHELESIFSPF----GQIITSRILSDNVTGLSKG 132 (352)
T ss_pred ccEEECCeeEEEEeeccccc---------ccccceEEECCccccCCHHHHHHHHhcc----CCEEEEEEEecCCCCCcCc
Confidence 99999999999999865321 1134689999999999999999999999 9999999999988899999
Q ss_pred EEEEEeccccccc
Q 015974 384 IAYVLFKTRDNWI 396 (397)
Q Consensus 384 fAFV~F~s~e~A~ 396 (397)
||||+|.+.++|+
T Consensus 133 ~~fv~f~~~~~A~ 145 (352)
T TIGR01661 133 VGFIRFDKRDEAD 145 (352)
T ss_pred EEEEEECCHHHHH
Confidence 9999999998885
No 3
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.92 E-value=1.1e-24 Score=224.52 Aligned_cols=155 Identities=24% Similarity=0.361 Sum_probs=131.1
Q ss_pred CCCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 221 ~~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
.....++|||+|||+.+|+++|.++|+.||.|..|+|+.+. .++.++|||||+|.+.++|.+|
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~-----------------~~~~skg~afVeF~~~e~A~~A 147 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDR-----------------NSRRSKGVAYVEFYDVESVIKA 147 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecC-----------------CCCCcceEEEEEECCHHHHHHH
Confidence 34567899999999999999999999999999999997653 2456789999999999999999
Q ss_pred HHhcCceecceeeEEecCCCCccccCC---CCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCC
Q 015974 301 LAFNMAVIGGNHIRLDRACPPRKKLKG---EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH 377 (397)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~~~k~~~~---~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~ 377 (397)
|.|+|..|.|++|.|..+......... .........++|||+|||..+++++|+++|..| |.|..|.|+++..
T Consensus 148 l~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~----G~i~~v~~~~d~~ 223 (457)
T TIGR01622 148 LALTGQMLLGRPIIVQSSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPF----GDIEDVQLHRDPE 223 (457)
T ss_pred HHhCCCEECCeeeEEeecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCC
Confidence 999999999999999987543211110 001112236899999999999999999999999 9999999999999
Q ss_pred CCCCccEEEEEeccccccc
Q 015974 378 MRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 378 tg~~kGfAFV~F~s~e~A~ 396 (397)
+|.++|||||+|.+.++|.
T Consensus 224 ~g~~~g~afV~f~~~e~A~ 242 (457)
T TIGR01622 224 TGRSKGFGFIQFHDAEEAK 242 (457)
T ss_pred CCccceEEEEEECCHHHHH
Confidence 8999999999999998874
No 4
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.92 E-value=8.8e-25 Score=230.91 Aligned_cols=152 Identities=18% Similarity=0.368 Sum_probs=128.2
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||||||+.+|+++|+.+|..||.|.+|+|+.++ .+++++|||||+|.+.++|..|| .
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~-----------------~TgkskGfAFVeF~s~e~A~~Ai~~ 168 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDP-----------------ATGKHKGFAFVEYEVPEAAQLALEQ 168 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecC-----------------CCCCcCCeEEEEeCcHHHHHHHHHh
Confidence 46889999999999999999999999999999997764 24567899999999999999999 6
Q ss_pred hcCceecceeeEEecCCCCccccCCCC--CCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCC
Q 015974 303 FNMAVIGGNHIRLDRACPPRKKLKGED--APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~--~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~ 380 (397)
|||..|.|+.|.|.+............ .......++|||+|||+.+++++|+++|+.| |.|.+|+|+++..+|.
T Consensus 169 lnG~~i~GR~IkV~rp~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~F----G~I~svrl~~D~~tgk 244 (612)
T TIGR01645 169 MNGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF----GEIVKCQLARAPTGRG 244 (612)
T ss_pred cCCeEEecceeeecccccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhc----CCeeEEEEEecCCCCC
Confidence 999999999999987543211110000 0112235789999999999999999999999 9999999999999999
Q ss_pred CccEEEEEeccccccc
Q 015974 381 GKGIAYVLFKTRDNWI 396 (397)
Q Consensus 381 ~kGfAFV~F~s~e~A~ 396 (397)
++|||||.|.+.++|.
T Consensus 245 sKGfGFVeFe~~e~A~ 260 (612)
T TIGR01645 245 HKGYGFIEYNNLQSQS 260 (612)
T ss_pred cCCeEEEEECCHHHHH
Confidence 9999999999998874
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.90 E-value=9e-23 Score=203.13 Aligned_cols=151 Identities=24% Similarity=0.331 Sum_probs=123.0
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.++|||+|||..+++++|+.+|+.||.|..++++.+. .++.++|||||+|.+.++|..|| .|
T Consensus 89 ~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~-----------------~~~~~~g~~fv~f~~~~~A~~ai~~l 151 (352)
T TIGR01661 89 GANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDN-----------------VTGLSKGVGFIRFDKRDEADRAIKTL 151 (352)
T ss_pred cceEEECCccccCCHHHHHHHHhccCCEEEEEEEecC-----------------CCCCcCcEEEEEECCHHHHHHHHHHh
Confidence 4679999999999999999999999999999886643 13456799999999999999999 69
Q ss_pred cCceecc--eeeEEecCCCCccccCC--------------CC--------------------------------------
Q 015974 304 NMAVIGG--NHIRLDRACPPRKKLKG--------------ED-------------------------------------- 329 (397)
Q Consensus 304 ng~~l~G--r~I~V~~a~~~~k~~~~--------------~~-------------------------------------- 329 (397)
||..+.| ++|.|.++..+...... ..
T Consensus 152 ~g~~~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (352)
T TIGR01661 152 NGTTPSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQ 231 (352)
T ss_pred CCCccCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhh
Confidence 9998877 56888877533210000 00
Q ss_pred -------------CC------------------ccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCC
Q 015974 330 -------------AP------------------LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (397)
Q Consensus 330 -------------~~------------------~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~t 378 (397)
.+ ....+.+|||+|||+.+++++|+++|++| |.|.+|+|++|..+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~f----G~v~~v~i~~d~~t 307 (352)
T TIGR01661 232 QHAVAQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPF----GAVQNVKIIRDLTT 307 (352)
T ss_pred hcccccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEeEcCCC
Confidence 00 00112369999999999999999999999 99999999999999
Q ss_pred CCCccEEEEEeccccccc
Q 015974 379 RVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 379 g~~kGfAFV~F~s~e~A~ 396 (397)
|.++|||||+|.+.++|.
T Consensus 308 ~~skG~aFV~F~~~~~A~ 325 (352)
T TIGR01661 308 NQCKGYGFVSMTNYDEAA 325 (352)
T ss_pred CCccceEEEEECCHHHHH
Confidence 999999999999998875
No 6
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.89 E-value=5e-23 Score=218.20 Aligned_cols=141 Identities=22% Similarity=0.353 Sum_probs=123.8
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-HhcC
Q 015974 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (397)
Q Consensus 227 tVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng 305 (397)
+|||||||+++|+++|+++|+.||.|.+|+|+++. .+++++|||||.|.+.++|..|| .+|+
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~-----------------~t~~s~G~afV~F~~~~~A~~Al~~ln~ 64 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDS-----------------VTRRSLGYGYVNFQNPADAERALETMNF 64 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC-----------------CCCCcceEEEEEECCHHHHHHHHHHhCC
Confidence 69999999999999999999999999999997764 24567799999999999999999 6999
Q ss_pred ceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEE
Q 015974 306 AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (397)
Q Consensus 306 ~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfA 385 (397)
..|.|+.|+|.|+...... ......+|||+|||.++++++|+++|+.| |.|..|+|+.+. +|.++|||
T Consensus 65 ~~i~gk~i~i~~s~~~~~~-------~~~~~~~vfV~nLp~~~~~~~L~~~F~~~----G~i~~~~i~~~~-~g~skg~a 132 (562)
T TIGR01628 65 KRLGGKPIRIMWSQRDPSL-------RRSGVGNIFVKNLDKSVDNKALFDTFSKF----GNILSCKVATDE-NGKSRGYG 132 (562)
T ss_pred CEECCeeEEeecccccccc-------cccCCCceEEcCCCccCCHHHHHHHHHhc----CCcceeEeeecC-CCCcccEE
Confidence 9999999999998532111 11234689999999999999999999999 999999999985 58899999
Q ss_pred EEEeccccccc
Q 015974 386 YVLFKTRDNWI 396 (397)
Q Consensus 386 FV~F~s~e~A~ 396 (397)
||.|.+.++|.
T Consensus 133 fV~F~~~e~A~ 143 (562)
T TIGR01628 133 FVHFEKEESAK 143 (562)
T ss_pred EEEECCHHHHH
Confidence 99999998875
No 7
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.88 E-value=3.9e-22 Score=208.26 Aligned_cols=162 Identities=17% Similarity=0.322 Sum_probs=120.0
Q ss_pred cCCCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHH
Q 015974 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (397)
Q Consensus 220 ~~~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~ 299 (397)
......++|||||||+.+|+++|.++|..|+.+....... + .. .......+.++|||||+|.+.++|..
T Consensus 170 ~~~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~----~-~~------~v~~~~~~~~kg~afVeF~~~e~A~~ 238 (509)
T TIGR01642 170 QATRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAE----D-GK------HVSSVNINKEKNFAFLEFRTVEEATF 238 (509)
T ss_pred cCCccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCC----C-CC------ceEEEEECCCCCEEEEEeCCHHHHhh
Confidence 3456689999999999999999999999863211100000 0 00 00011123467999999999999999
Q ss_pred HHHhcCceecceeeEEecCCCCcccc--------CC------------CCCCccccccceecCCCCccCcHHHHHHHhcc
Q 015974 300 ALAFNMAVIGGNHIRLDRACPPRKKL--------KG------------EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCG 359 (397)
Q Consensus 300 Al~lng~~l~Gr~I~V~~a~~~~k~~--------~~------------~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~ 359 (397)
||.|+|..|.|+.|.|.+........ .. .........++|||+|||+.+++++|+++|..
T Consensus 239 Al~l~g~~~~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~ 318 (509)
T TIGR01642 239 AMALDSIIYSNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLES 318 (509)
T ss_pred hhcCCCeEeeCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 99999999999999997653211000 00 00011234579999999999999999999999
Q ss_pred CCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 360 LNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 360 f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
| |.|..|.|+++..+|.++|||||+|.+.++|.
T Consensus 319 ~----G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~ 351 (509)
T TIGR01642 319 F----GDLKAFNLIKDIATGLSKGYAFCEYKDPSVTD 351 (509)
T ss_pred c----CCeeEEEEEecCCCCCcCeEEEEEECCHHHHH
Confidence 9 99999999999999999999999999987764
No 8
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=7.6e-22 Score=186.35 Aligned_cols=144 Identities=23% Similarity=0.433 Sum_probs=125.2
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
..-|||+.|...++-+.|++.|..||+|.+++|++|. ++++++||+||-|.+.++|+.|| .|
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~-----------------~T~KsKGYgFVSf~~k~dAEnAI~~M 124 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDM-----------------NTGKSKGYGFVSFPNKEDAENAIQQM 124 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecc-----------------cCCcccceeEEeccchHHHHHHHHHh
Confidence 5669999999999999999999999999999998765 57789999999999999999999 69
Q ss_pred cCceecceeeEEecCCCCccccCCCC-------CCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCC
Q 015974 304 NMAVIGGNHIRLDRACPPRKKLKGED-------APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP 376 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~-------~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~ 376 (397)
||+.|.+|.|+-.|+.++........ .......++|||||++..+|+++|++.|++| |.|..|||.++
T Consensus 125 nGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~f----G~I~EVRvFk~- 199 (321)
T KOG0148|consen 125 NGQWLGRRTIRTNWATRKPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPF----GPIQEVRVFKD- 199 (321)
T ss_pred CCeeeccceeeccccccCccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccC----CcceEEEEecc-
Confidence 99999999999999986531111110 1223457899999999999999999999999 99999999887
Q ss_pred CCCCCccEEEEEecccccc
Q 015974 377 HMRVGKGIAYVLFKTRDNW 395 (397)
Q Consensus 377 ~tg~~kGfAFV~F~s~e~A 395 (397)
+|||||.|.+.++|
T Consensus 200 -----qGYaFVrF~tkEaA 213 (321)
T KOG0148|consen 200 -----QGYAFVRFETKEAA 213 (321)
T ss_pred -----cceEEEEecchhhH
Confidence 57999999999887
No 9
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.85 E-value=6.4e-21 Score=202.10 Aligned_cols=149 Identities=23% Similarity=0.376 Sum_probs=125.8
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.++|||+|||+.+|+++|+++|+.||.|.+|.++.+. .+.++|||||.|.+.++|..|+ .+
T Consensus 178 ~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~------------------~g~~~G~afV~F~~~e~A~~Av~~l 239 (562)
T TIGR01628 178 FTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG------------------SGRSRGFAFVNFEKHEDAAKAVEEM 239 (562)
T ss_pred CCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC------------------CCCcccEEEEEECCHHHHHHHHHHh
Confidence 5779999999999999999999999999999986642 2456799999999999999999 69
Q ss_pred cCceec----ceeeEEecCCCCccccC---------CCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEE
Q 015974 304 NMAVIG----GNHIRLDRACPPRKKLK---------GEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAV 370 (397)
Q Consensus 304 ng~~l~----Gr~I~V~~a~~~~k~~~---------~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~V 370 (397)
+|..+. |+.|.|.++........ ...........+|||+||+..+++++|+++|+.| |.|.+|
T Consensus 240 ~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~----G~i~~~ 315 (562)
T TIGR01628 240 NGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSEC----GEITSA 315 (562)
T ss_pred CCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhc----CCeEEE
Confidence 999999 99999998865422100 0001112345789999999999999999999999 999999
Q ss_pred EEeeCCCCCCCccEEEEEeccccccc
Q 015974 371 RVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 371 ri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+|+.+ .+|.++|||||+|.+.++|.
T Consensus 316 ~i~~d-~~g~~~g~gfV~f~~~~~A~ 340 (562)
T TIGR01628 316 KVMLD-EKGVSRGFGFVCFSNPEEAN 340 (562)
T ss_pred EEEEC-CCCCcCCeEEEEeCCHHHHH
Confidence 99999 67999999999999998875
No 10
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.84 E-value=3.1e-21 Score=191.62 Aligned_cols=148 Identities=20% Similarity=0.425 Sum_probs=125.0
Q ss_pred CcCCCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHH
Q 015974 219 DDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (397)
Q Consensus 219 d~~~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~ 298 (397)
|..+.+.-.+|||.+|..++|.+|+.+|.+||.|.+|.|++|+. ++.++|||||.|.+.++|.
T Consensus 28 d~~d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~-----------------t~~s~gcCFv~~~trk~a~ 90 (510)
T KOG0144|consen 28 DNPDGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKS-----------------TGQSKGCCFVKYYTRKEAD 90 (510)
T ss_pred CCCCchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccc-----------------cCcccceEEEEeccHHHHH
Confidence 33445567799999999999999999999999999999988762 4567899999999999999
Q ss_pred HHH-HhcCc-eecc--eeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEee
Q 015974 299 AAL-AFNMA-VIGG--NHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIR 374 (397)
Q Consensus 299 ~Al-~lng~-~l~G--r~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~r 374 (397)
+|+ +|+.. .|.| .+|.|.++...+... ...++||||-|+..+|+.+|+.+|++| |.|+.|+|++
T Consensus 91 ~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~--------~~e~KLFvg~lsK~~te~evr~iFs~f----G~Ied~~ilr 158 (510)
T KOG0144|consen 91 EAINALHNQKTLPGMHHPVQVKYADGERERI--------VEERKLFVGMLSKQCTENEVREIFSRF----GHIEDCYILR 158 (510)
T ss_pred HHHHHhhcccccCCCCcceeecccchhhhcc--------ccchhhhhhhccccccHHHHHHHHHhh----Cccchhhhee
Confidence 999 55544 6655 568888887543221 224799999999999999999999999 9999999999
Q ss_pred CCCCCCCccEEEEEeccccccc
Q 015974 375 HPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 375 d~~tg~~kGfAFV~F~s~e~A~ 396 (397)
|.. +.+||||||.|.+.+.|+
T Consensus 159 d~~-~~sRGcaFV~fstke~A~ 179 (510)
T KOG0144|consen 159 DPD-GLSRGCAFVKFSTKEMAV 179 (510)
T ss_pred ccc-ccccceeEEEEehHHHHH
Confidence 976 999999999999988764
No 11
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.84 E-value=8.8e-21 Score=200.18 Aligned_cols=137 Identities=21% Similarity=0.335 Sum_probs=114.5
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.++|||+|||+++++++|+.+|++||.|.+|+|+++ .++.++|||||+|.+.++|+.|| .|
T Consensus 58 ~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D------------------~sG~sRGfaFV~F~~~e~A~~Ai~~l 119 (578)
T TIGR01648 58 GCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD------------------FSGQNRGYAFVTFCGKEEAKEAVKLL 119 (578)
T ss_pred CCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC------------------CCCCccceEEEEeCCHHHHHHHHHHc
Confidence 588999999999999999999999999999999775 24567899999999999999999 59
Q ss_pred cCceec-ceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCc
Q 015974 304 NMAVIG-GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (397)
Q Consensus 304 ng~~l~-Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~k 382 (397)
|+..+. |+.|.|+++. ..++|||+|||.++++++|.++|..+.. |.+..|.+......+.++
T Consensus 120 ng~~i~~Gr~l~V~~S~---------------~~~rLFVgNLP~~~TeeeL~eeFskv~e--gvv~vIv~~~~~~kgKnR 182 (578)
T TIGR01648 120 NNYEIRPGRLLGVCISV---------------DNCRLFVGGIPKNKKREEILEEFSKVTE--GVVDVIVYHSAADKKKNR 182 (578)
T ss_pred CCCeecCCccccccccc---------------cCceeEeecCCcchhhHHHHHHhhcccC--CceEEEEeccccccCccC
Confidence 998885 7888887653 2478999999999999999999999832 334444444444567889
Q ss_pred cEEEEEeccccccc
Q 015974 383 GIAYVLFKTRDNWI 396 (397)
Q Consensus 383 GfAFV~F~s~e~A~ 396 (397)
|||||+|.++++|.
T Consensus 183 GFAFVeF~s~edAa 196 (578)
T TIGR01648 183 GFAFVEYESHRAAA 196 (578)
T ss_pred ceEEEEcCCHHHHH
Confidence 99999999998874
No 12
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.84 E-value=4e-20 Score=193.04 Aligned_cols=141 Identities=21% Similarity=0.261 Sum_probs=116.6
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH--
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-- 302 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~-- 302 (397)
+++|||+|||+.+|+++|+++|+.||.|.+|.|+. ++|||||+|.+.++|..|+.
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~-----------------------~k~~afVef~~~e~A~~Ai~~~ 58 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP-----------------------GKRQALVEFEDEESAKACVNFA 58 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC-----------------------CCCEEEEEeCchHHHHHHHHHh
Confidence 68999999999999999999999999999998843 34799999999999999994
Q ss_pred -hcCceecceeeEEecCCCCccccCCC---CCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCC
Q 015974 303 -FNMAVIGGNHIRLDRACPPRKKLKGE---DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (397)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~k~~~~~---~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~t 378 (397)
+++..+.|++|.|.++.......... .........+|||+||++.+++++|+++|+.| |.|..|.|+++..
T Consensus 59 ~~~~~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~----G~V~~v~i~~~~~- 133 (481)
T TIGR01649 59 TSVPIYIRGQPAFFNYSTSQEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPY----GKVLRIVTFTKNN- 133 (481)
T ss_pred hcCCceEcCeEEEEEecCCcccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhcc----CCEEEEEEEecCC-
Confidence 57899999999999987543221110 00111223579999999999999999999999 9999999988642
Q ss_pred CCCccEEEEEeccccccc
Q 015974 379 RVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 379 g~~kGfAFV~F~s~e~A~ 396 (397)
.|+|||+|.+.++|.
T Consensus 134 ---~~~afVef~~~~~A~ 148 (481)
T TIGR01649 134 ---VFQALVEFESVNSAQ 148 (481)
T ss_pred ---ceEEEEEECCHHHHH
Confidence 479999999998885
No 13
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=2.8e-20 Score=185.61 Aligned_cols=137 Identities=24% Similarity=0.392 Sum_probs=120.6
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
.-+.||||.||.++.+++|.-+|.+.|+|-++|||.+++ +|.++|||||.|.+.+.|+.|+ .
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~-----------------sG~nRGYAFVtf~~Ke~Aq~Aik~ 144 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPF-----------------SGDNRGYAFVTFCTKEEAQEAIKE 144 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeeccc-----------------CCCCcceEEEEeecHHHHHHHHHH
Confidence 357799999999999999999999999999999999874 5667899999999999999999 6
Q ss_pred hcCcee-cceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCC-CCCC
Q 015974 303 FNMAVI-GGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP-HMRV 380 (397)
Q Consensus 303 lng~~l-~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~-~tg~ 380 (397)
||+..| .|+.|.|+.+.. ++.|||||||.++++++|.+.|..... | |..|.|...+ +..+
T Consensus 145 lnn~Eir~GK~igvc~Sva---------------n~RLFiG~IPK~k~keeIlee~~kVte--G-VvdVivy~~p~dk~K 206 (506)
T KOG0117|consen 145 LNNYEIRPGKLLGVCVSVA---------------NCRLFIGNIPKTKKKEEILEEMKKVTE--G-VVDVIVYPSPDDKTK 206 (506)
T ss_pred hhCccccCCCEeEEEEeee---------------cceeEeccCCccccHHHHHHHHHhhCC--C-eeEEEEecCcccccc
Confidence 999977 799999999863 489999999999999999999999854 4 6667666655 5678
Q ss_pred CccEEEEEecccccc
Q 015974 381 GKGIAYVLFKTRDNW 395 (397)
Q Consensus 381 ~kGfAFV~F~s~e~A 395 (397)
+||||||+|.++..|
T Consensus 207 NRGFaFveYe~H~~A 221 (506)
T KOG0117|consen 207 NRGFAFVEYESHRAA 221 (506)
T ss_pred ccceEEEEeecchhH
Confidence 999999999998766
No 14
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.83 E-value=4e-20 Score=188.00 Aligned_cols=150 Identities=31% Similarity=0.440 Sum_probs=123.8
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.-.|.|+||||.+...+|..+|+.||.|..|.|++.+ .|+-+|||||.|....+|..|| .+
T Consensus 117 k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~------------------dgklcGFaFV~fk~~~dA~~Al~~~ 178 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK------------------DGKLCGFAFVQFKEKKDAEKALEFF 178 (678)
T ss_pred cceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC------------------CCCccceEEEEEeeHHHHHHHHHhc
Confidence 3559999999999999999999999999999985432 2334599999999999999999 59
Q ss_pred cCceecceeeEEecCCCCcccc---------------------------------------------CC-----------
Q 015974 304 NMAVIGGNHIRLDRACPPRKKL---------------------------------------------KG----------- 327 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~---------------------------------------------~~----------- 327 (397)
|+..|+||+|.|+|+-+..... .+
T Consensus 179 N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~ 258 (678)
T KOG0127|consen 179 NGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEES 258 (678)
T ss_pred cCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccc
Confidence 9999999999999984321100 00
Q ss_pred -------CCC--C----------------ccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCc
Q 015974 328 -------EDA--P----------------LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (397)
Q Consensus 328 -------~~~--~----------------~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~k 382 (397)
++. + ...-..+|||+|||+++|+++|+++|+.| |.|.++.|+.++.|+.++
T Consensus 259 Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskF----G~v~ya~iV~~k~T~~sk 334 (678)
T KOG0127|consen 259 EEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKF----GEVKYAIIVKDKDTGHSK 334 (678)
T ss_pred cccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhh----ccceeEEEEeccCCCCcc
Confidence 000 0 00113799999999999999999999999 999999999999999999
Q ss_pred cEEEEEeccccccc
Q 015974 383 GIAYVLFKTRDNWI 396 (397)
Q Consensus 383 GfAFV~F~s~e~A~ 396 (397)
|.|||.|.+..+|+
T Consensus 335 GtAFv~Fkt~~~~~ 348 (678)
T KOG0127|consen 335 GTAFVKFKTQIAAQ 348 (678)
T ss_pred cceEEEeccHHHHH
Confidence 99999999987764
No 15
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.82 E-value=1.1e-19 Score=189.64 Aligned_cols=146 Identities=16% Similarity=0.238 Sum_probs=118.4
Q ss_pred CccCEEEEecCCC-CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 223 KLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~-~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
...++|||+|||+ .+|+++|+++|+.||.|.+|+|+.. .+|||||+|.+.++|..||
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~----------------------~~g~afV~f~~~~~A~~Ai 330 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN----------------------KKETALIEMADPYQAQLAL 330 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC----------------------CCCEEEEEECCHHHHHHHH
Confidence 3568999999998 6999999999999999999998653 2489999999999999999
Q ss_pred -HhcCceecceeeEEecCCCCccccC------------C---C--------C-----CCccccccceecCCCCccCcHHH
Q 015974 302 -AFNMAVIGGNHIRLDRACPPRKKLK------------G---E--------D-----APLYDIKKTVFVGNLPFDVKDEE 352 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~k~~~------------~---~--------~-----~~~~~~~~tLfVgNLp~~vteed 352 (397)
.|||..|.|+.|.|.++........ . . . .....++.+|||+|||.++++++
T Consensus 331 ~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~ 410 (481)
T TIGR01649 331 THLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEED 410 (481)
T ss_pred HHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHH
Confidence 6999999999999998753210000 0 0 0 00124567999999999999999
Q ss_pred HHHHhccCCCCCCC--eEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 353 IYQLFCGLNDLESS--VEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 353 L~~~F~~f~~~~G~--I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
|+++|+.| |. |..|++.... +..+|||||+|.+.++|.
T Consensus 411 L~~lF~~~----G~~~i~~ik~~~~~--~~~~~~gfVeF~~~e~A~ 450 (481)
T TIGR01649 411 LKELFAEN----GVHKVKKFKFFPKD--NERSKMGLLEWESVEDAV 450 (481)
T ss_pred HHHHHHhc----CCccceEEEEecCC--CCcceeEEEEcCCHHHHH
Confidence 99999999 76 8888886553 236899999999998885
No 16
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.82 E-value=2.8e-20 Score=167.06 Aligned_cols=144 Identities=24% Similarity=0.448 Sum_probs=124.0
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
....|||||||+..++++-|+++|-++|+|.+|+++.+.. +..++|||||+|.++++|+-|+.
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv-----------------~~~~qGygF~Ef~~eedadYAik 69 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRV-----------------TQKHQGYGFAEFRTEEDADYAIK 69 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhh-----------------cccccceeEEEEechhhhHHHHH
Confidence 3468999999999999999999999999999999977653 22456999999999999999995
Q ss_pred -hcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEE-EEEeeCCCCCC
Q 015974 303 -FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA-VRVIRHPHMRV 380 (397)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~-Vri~rd~~tg~ 380 (397)
||+..|-|++|+|..+....+ ..+.+..|||+||.+.+++..|++.|+.| |.+.. -.|++++.||.
T Consensus 70 iln~VkLYgrpIrv~kas~~~~--------nl~vganlfvgNLd~~vDe~~L~dtFsaf----G~l~~~P~i~rd~~tg~ 137 (203)
T KOG0131|consen 70 ILNMVKLYGRPIRVNKASAHQK--------NLDVGANLFVGNLDPEVDEKLLYDTFSAF----GVLISPPKIMRDPDTGN 137 (203)
T ss_pred HHHHHHhcCceeEEEecccccc--------cccccccccccccCcchhHHHHHHHHHhc----cccccCCcccccccCCC
Confidence 999999999999999873222 22334789999999999999999999999 66654 47999999999
Q ss_pred CccEEEEEecccccc
Q 015974 381 GKGIAYVLFKTRDNW 395 (397)
Q Consensus 381 ~kGfAFV~F~s~e~A 395 (397)
++|||||.|.+.+.+
T Consensus 138 ~~~~g~i~~~sfeas 152 (203)
T KOG0131|consen 138 PKGFGFINYASFEAS 152 (203)
T ss_pred CCCCeEEechhHHHH
Confidence 999999999987764
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.82 E-value=4.4e-20 Score=173.62 Aligned_cols=143 Identities=19% Similarity=0.351 Sum_probs=129.7
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
...|.|.-||..+|+++|+.+|...|+|++|.++++++ +|.|.||+||-|.++.+|++|+ .|
T Consensus 41 kTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKi-----------------tGqSLGYGFVNYv~p~DAe~Aintl 103 (360)
T KOG0145|consen 41 KTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKI-----------------TGQSLGYGFVNYVRPKDAEKAINTL 103 (360)
T ss_pred cceeeeeecccccCHHHHHHHhhcccceeeeeeeeccc-----------------cccccccceeeecChHHHHHHHhhh
Confidence 45699999999999999999999999999999998863 5678899999999999999999 69
Q ss_pred cCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCcc
Q 015974 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kG 383 (397)
||..|..+.|.|.++.|..... ....|||.+||..+|..+|.++|++| |.|..-||..|..||.+||
T Consensus 104 NGLrLQ~KTIKVSyARPSs~~I---------k~aNLYvSGlPktMtqkelE~iFs~f----GrIItSRiL~dqvtg~srG 170 (360)
T KOG0145|consen 104 NGLRLQNKTIKVSYARPSSDSI---------KDANLYVSGLPKTMTQKELEQIFSPF----GRIITSRILVDQVTGLSRG 170 (360)
T ss_pred cceeeccceEEEEeccCChhhh---------cccceEEecCCccchHHHHHHHHHHh----hhhhhhhhhhhcccceecc
Confidence 9999999999999998743222 23689999999999999999999999 9999999999999999999
Q ss_pred EEEEEecccccccC
Q 015974 384 IAYVLFKTRDNWIE 397 (397)
Q Consensus 384 fAFV~F~s~e~A~e 397 (397)
.|||.|....+|.+
T Consensus 171 VgFiRFDKr~EAe~ 184 (360)
T KOG0145|consen 171 VGFIRFDKRIEAEE 184 (360)
T ss_pred eeEEEecchhHHHH
Confidence 99999999888753
No 18
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.81 E-value=2.7e-19 Score=186.91 Aligned_cols=152 Identities=18% Similarity=0.237 Sum_probs=120.5
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+.+|+++|.++|..||.|..+.|+.++ .+|.++|||||+|.+.++|..|| .
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~-----------------~~g~~~g~afv~f~~~~~a~~A~~~ 356 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDI-----------------ATGLSKGYAFCEYKDPSVTDVAIAA 356 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-----------------CCCCcCeEEEEEECCHHHHHHHHHH
Confidence 45789999999999999999999999999999886643 34567899999999999999999 6
Q ss_pred hcCceecceeeEEecCCCCccccCCCC-------------------CCccccccceecCCCCccC----------cHHHH
Q 015974 303 FNMAVIGGNHIRLDRACPPRKKLKGED-------------------APLYDIKKTVFVGNLPFDV----------KDEEI 353 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~-------------------~~~~~~~~tLfVgNLp~~v----------teedL 353 (397)
|||..|.|+.|.|.++........... .....++.+|+|.||.... ..++|
T Consensus 357 l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl 436 (509)
T TIGR01642 357 LNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDV 436 (509)
T ss_pred cCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHH
Confidence 999999999999999864321110000 0012356789999996421 23689
Q ss_pred HHHhccCCCCCCCeEEEEEeeCC---CCCCCccEEEEEeccccccc
Q 015974 354 YQLFCGLNDLESSVEAVRVIRHP---HMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 354 ~~~F~~f~~~~G~I~~Vri~rd~---~tg~~kGfAFV~F~s~e~A~ 396 (397)
+++|+.| |.|..|.|+++. .++.+.|+|||+|.+.++|.
T Consensus 437 ~~~f~~~----G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~ 478 (509)
T TIGR01642 437 KTEFSKY----GPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAE 478 (509)
T ss_pred HHHHHhc----CCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHH
Confidence 9999999 999999999753 34567899999999998885
No 19
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.80 E-value=1.5e-19 Score=183.77 Aligned_cols=149 Identities=21% Similarity=0.334 Sum_probs=124.3
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hhc
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (397)
.||||++||+.+|.++|.++|+.+|+|..+.+++.+ .++.++||+||.|+-.++++.|+ ..+
T Consensus 6 ~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~-----------------gs~~~RGfgfVtFam~ED~qrA~~e~~ 68 (678)
T KOG0127|consen 6 ATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNK-----------------GSSEKRGFGFVTFAMEEDVQRALAETE 68 (678)
T ss_pred ceEEEecCCCccchhHHHHhhhcccCcceeEEecCC-----------------CcccccCccceeeehHhHHHHHHHHhh
Confidence 789999999999999999999999999998886543 23457899999999999999999 589
Q ss_pred CceecceeeEEecCCCCccccCCCC-----------------CCccccccceecCCCCccCcHHHHHHHhccCCCCCCCe
Q 015974 305 MAVIGGNHIRLDRACPPRKKLKGED-----------------APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSV 367 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~~~~~-----------------~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I 367 (397)
+..|.||.|+|..+.+......... .....+...|.|+||||.+...+|..+|+.| |.|
T Consensus 69 ~~kf~Gr~l~v~~A~~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~----G~V 144 (678)
T KOG0127|consen 69 QSKFEGRILNVDPAKKRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNF----GKV 144 (678)
T ss_pred cCcccceecccccccccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhc----ceE
Confidence 9999999999999976433221100 0112346789999999999999999999999 999
Q ss_pred EEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 368 EAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 368 ~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..|.|++..+.+.+ |||||+|....+|.
T Consensus 145 ~Ei~IP~k~dgklc-GFaFV~fk~~~dA~ 172 (678)
T KOG0127|consen 145 VEIVIPRKKDGKLC-GFAFVQFKEKKDAE 172 (678)
T ss_pred EEEEcccCCCCCcc-ceEEEEEeeHHHHH
Confidence 99999999885555 99999999887763
No 20
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=1.6e-18 Score=169.39 Aligned_cols=149 Identities=18% Similarity=0.377 Sum_probs=124.9
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
-+.||||.+.+.+.++.|+..|..||+|.+|.+..++. +++++|||||+|.-++.|+.|+ .+
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~-----------------T~kHKgFAFVEYEvPEaAqLAlEqM 175 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA-----------------TGKHKGFAFVEYEVPEAAQLALEQM 175 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccc-----------------cccccceEEEEEeCcHHHHHHHHHh
Confidence 46799999999999999999999999999999977763 5678899999999999999999 69
Q ss_pred cCceecceeeEEecCCCCccccCCCCC--CccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCC
Q 015974 304 NMAVIGGNHIRLDRACPPRKKLKGEDA--PLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~--~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~ 381 (397)
||.+++||.|.|.+...-...+..-+. .....-..|||..++++++++||+.+|+-| |.|.+|.+.+++..+.+
T Consensus 176 Ng~mlGGRNiKVgrPsNmpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAF----G~I~~C~LAr~pt~~~H 251 (544)
T KOG0124|consen 176 NGQMLGGRNIKVGRPSNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAF----GEIVKCQLARAPTGRGH 251 (544)
T ss_pred ccccccCccccccCCCCCcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhh----cceeeEEeeccCCCCCc
Confidence 999999999999876431110000000 001124689999999999999999999999 99999999999999999
Q ss_pred ccEEEEEeccccc
Q 015974 382 KGIAYVLFKTRDN 394 (397)
Q Consensus 382 kGfAFV~F~s~e~ 394 (397)
+||||++|.+..+
T Consensus 252 kGyGfiEy~n~qs 264 (544)
T KOG0124|consen 252 KGYGFIEYNNLQS 264 (544)
T ss_pred cceeeEEeccccc
Confidence 9999999988654
No 21
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.75 E-value=2.9e-18 Score=179.18 Aligned_cols=150 Identities=23% Similarity=0.362 Sum_probs=123.7
Q ss_pred EEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-HhcCc
Q 015974 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMA 306 (397)
Q Consensus 228 VFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~ 306 (397)
|||.||++.+|.++|..+|..+|.|.+|.|...+. ++ +---|+|||||+|.++++|+.|+ .|+|+
T Consensus 518 lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd-----~~---------~k~lSmGfgFVEF~~~e~A~~a~k~lqgt 583 (725)
T KOG0110|consen 518 LFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKD-----PA---------NKYLSMGFGFVEFAKPESAQAALKALQGT 583 (725)
T ss_pred hhhhcCCcccchhHHHHHHHhcCeEEEEEEecccc-----cc---------ccccccceeEEEecCHHHHHHHHHHhcCc
Confidence 99999999999999999999999999998855431 11 11237799999999999999999 69999
Q ss_pred eecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEE
Q 015974 307 VIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAY 386 (397)
Q Consensus 307 ~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAF 386 (397)
.|+|+.|.|.++........+...+.....+.|+|+|||+..+..+|+.+|..| |.|.+|||+.....+.++||||
T Consensus 584 vldGH~l~lk~S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aF----GqlksvRlPKK~~k~a~rGF~F 659 (725)
T KOG0110|consen 584 VLDGHKLELKISENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAF----GQLKSVRLPKKIGKGAHRGFGF 659 (725)
T ss_pred eecCceEEEEeccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcc----cceeeeccchhhcchhhcccee
Confidence 999999999998722211111112223335789999999999999999999999 9999999999877788999999
Q ss_pred EEecccccc
Q 015974 387 VLFKTRDNW 395 (397)
Q Consensus 387 V~F~s~e~A 395 (397)
|.|-++.+|
T Consensus 660 v~f~t~~ea 668 (725)
T KOG0110|consen 660 VDFLTPREA 668 (725)
T ss_pred eeccCcHHH
Confidence 999998766
No 22
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.75 E-value=3.1e-18 Score=168.48 Aligned_cols=148 Identities=21% Similarity=0.369 Sum_probs=129.9
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHh
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (397)
+.++||||+|+|.+|++.|+.+|.+||.|..|.+++++. +++++||+||.|.+++.+..+|..
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~-----------------t~rsrgFgfv~f~~~~~v~~vl~~ 67 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPS-----------------TGRSRGFGFVTFATPEGVDAVLNA 67 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCC-----------------CCCcccccceecCCCcchheeecc
Confidence 478899999999999999999999999999999988863 345779999999999999999987
Q ss_pred cCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCcc
Q 015974 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kG 383 (397)
.-+.|.|+.|.+..+.+........ .......|||++||..+++++|+++|.+| |.|..+.++.|..+..++|
T Consensus 68 ~~h~~dgr~ve~k~av~r~~~~~~~---~~~~tkkiFvGG~~~~~~e~~~r~yfe~~----g~v~~~~~~~d~~~~~~rg 140 (311)
T KOG4205|consen 68 RTHKLDGRSVEPKRAVSREDQTKVG---RHLRTKKIFVGGLPPDTTEEDFKDYFEQF----GKVADVVIMYDKTTSRPRG 140 (311)
T ss_pred cccccCCccccceeccCcccccccc---cccceeEEEecCcCCCCchHHHhhhhhcc----ceeEeeEEeeccccccccc
Confidence 7888999999999998754433222 12356799999999999999999999999 8999999999999999999
Q ss_pred EEEEEecccccc
Q 015974 384 IAYVLFKTRDNW 395 (397)
Q Consensus 384 fAFV~F~s~e~A 395 (397)
|+||.|.+.+++
T Consensus 141 Fgfv~~~~e~sV 152 (311)
T KOG4205|consen 141 FGFVTFDSEDSV 152 (311)
T ss_pred ceeeEecccccc
Confidence 999999988765
No 23
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1.3e-17 Score=157.17 Aligned_cols=150 Identities=27% Similarity=0.326 Sum_probs=122.6
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
...|||.+||..+|..+|..+|+.||.|..-||+.+. -+|.++|.+||.|....+|+.|| .|
T Consensus 127 ~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dq-----------------vtg~srGVgFiRFDKr~EAe~AIk~l 189 (360)
T KOG0145|consen 127 DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQ-----------------VTGLSRGVGFIRFDKRIEAEEAIKGL 189 (360)
T ss_pred ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhc-----------------ccceecceeEEEecchhHHHHHHHhc
Confidence 4569999999999999999999999999777765543 35678899999999999999999 69
Q ss_pred cCceecce--eeEEecCCCCccccC---------------C-----------------------CCCC------------
Q 015974 304 NMAVIGGN--HIRLDRACPPRKKLK---------------G-----------------------EDAP------------ 331 (397)
Q Consensus 304 ng~~l~Gr--~I~V~~a~~~~k~~~---------------~-----------------------~~~~------------ 331 (397)
||+.-.|. +|.|.++..|..... + ..+|
T Consensus 190 NG~~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~ 269 (360)
T KOG0145|consen 190 NGQKPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGV 269 (360)
T ss_pred cCCCCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeee
Confidence 99987664 699988754311100 0 0000
Q ss_pred ----ccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEecccccc
Q 015974 332 ----LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNW 395 (397)
Q Consensus 332 ----~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A 395 (397)
......+|||-||.+++++.-|+++|.+| |.|.+|.|++|..|+.++|||||.+.+.++|
T Consensus 270 ~lp~~~~~g~ciFvYNLspd~de~~LWQlFgpF----GAv~nVKvirD~ttnkCKGfgFVtMtNYdEA 333 (360)
T KOG0145|consen 270 NLPGGPGGGWCIFVYNLSPDADESILWQLFGPF----GAVTNVKVIRDFTTNKCKGFGFVTMTNYDEA 333 (360)
T ss_pred ccCCCCCCeeEEEEEecCCCchHhHHHHHhCcc----cceeeEEEEecCCcccccceeEEEecchHHH
Confidence 01225799999999999999999999999 9999999999999999999999999998765
No 24
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.73 E-value=1.5e-17 Score=166.16 Aligned_cols=142 Identities=25% Similarity=0.384 Sum_probs=115.0
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCC-eeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~-I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
-..+.|||||||...++++|.+.|++.++ |+.|.|...+ .+..+|||||||+|.++.+|..|-
T Consensus 162 van~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p----------------~dk~KNRGFaFveYe~H~~Aa~aR 225 (506)
T KOG0117|consen 162 VANCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSP----------------DDKTKNRGFAFVEYESHRAAAMAR 225 (506)
T ss_pred eecceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCc----------------cccccccceEEEEeecchhHHHHH
Confidence 35788999999999999999999999865 3555553332 133468999999999999998887
Q ss_pred -H-hcCc-eecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCC
Q 015974 302 -A-FNMA-VIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (397)
Q Consensus 302 -~-lng~-~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~t 378 (397)
. +++. .++|+.|.|.|+.+.... +......-..|||+||+.++|++.|..+|..| |.|+.|..++|
T Consensus 226 rKl~~g~~klwgn~~tVdWAep~~e~----ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~----G~veRVkk~rD--- 294 (506)
T KOG0117|consen 226 RKLMPGKIKLWGNAITVDWAEPEEEP----DEDTMSKVKVLYVRNLMESTTEETLKKLFNEF----GKVERVKKPRD--- 294 (506)
T ss_pred hhccCCceeecCCcceeeccCcccCC----ChhhhhheeeeeeeccchhhhHHHHHHHHHhc----cceEEeecccc---
Confidence 3 5555 789999999999874321 11123446789999999999999999999999 99999988876
Q ss_pred CCCccEEEEEeccccccc
Q 015974 379 RVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 379 g~~kGfAFV~F~s~e~A~ 396 (397)
||||+|.++++|.
T Consensus 295 -----YaFVHf~eR~dav 307 (506)
T KOG0117|consen 295 -----YAFVHFAEREDAV 307 (506)
T ss_pred -----eeEEeecchHHHH
Confidence 9999999999885
No 25
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2.1e-17 Score=166.95 Aligned_cols=127 Identities=24% Similarity=0.418 Sum_probs=114.6
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hhc
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (397)
..|||| +++|+..|.++|+.+|+|.+|++.++. + +.|||||.|.++.+|.+|| ++|
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-------------------t-slgy~yvnf~~~~da~~A~~~~n 58 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-------------------T-SLGYAYVNFQQPADAERALDTMN 58 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-------------------C-ccceEEEecCCHHHHHHHHHHcC
Confidence 359999 999999999999999999999997752 1 5699999999999999999 799
Q ss_pred CceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccE
Q 015974 305 MAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI 384 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGf 384 (397)
...+.|++|+|.|+..- + ..|||.||+.+++...|+++|+.| |.|.+|++.++.+ | ++||
T Consensus 59 ~~~~~~~~~rim~s~rd-------------~-~~~~i~nl~~~~~~~~~~d~f~~~----g~ilS~kv~~~~~-g-~kg~ 118 (369)
T KOG0123|consen 59 FDVLKGKPIRIMWSQRD-------------P-SLVFIKNLDESIDNKSLYDTFSEF----GNILSCKVATDEN-G-SKGY 118 (369)
T ss_pred CcccCCcEEEeehhccC-------------C-ceeeecCCCcccCcHHHHHHHHhh----cCeeEEEEEEcCC-C-ceee
Confidence 99999999999999742 1 229999999999999999999999 9999999999965 6 9999
Q ss_pred EEEEeccccccc
Q 015974 385 AYVLFKTRDNWI 396 (397)
Q Consensus 385 AFV~F~s~e~A~ 396 (397)
||+|.+.++|.
T Consensus 119 -FV~f~~e~~a~ 129 (369)
T KOG0123|consen 119 -FVQFESEESAK 129 (369)
T ss_pred -EEEeCCHHHHH
Confidence 99999998875
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.72 E-value=4.3e-17 Score=172.35 Aligned_cols=142 Identities=24% Similarity=0.363 Sum_probs=110.2
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCC-eeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~-I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
.++|||+|||+.+|+++|.++|+.++. +..+.+...+ ...++++|||||+|.++++|..|+ .
T Consensus 138 ~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~----------------~~kgKnRGFAFVeF~s~edAa~Airk 201 (578)
T TIGR01648 138 NCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSA----------------ADKKKNRGFAFVEYESHRAAAMARRK 201 (578)
T ss_pred CceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccc----------------cccCccCceEEEEcCCHHHHHHHHHH
Confidence 578999999999999999999999864 3444332111 123457899999999999999999 4
Q ss_pred hc-C-ceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCC
Q 015974 303 FN-M-AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (397)
Q Consensus 303 ln-g-~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~ 380 (397)
|+ + ..++|+.|.|.++.+..... .......++|||+||+..+++++|+++|+.|.. |.|..|.+++
T Consensus 202 L~~gki~l~Gr~I~VdwA~p~~~~d----~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~--G~I~rV~~~r------ 269 (578)
T TIGR01648 202 LMPGRIQLWGHVIAVDWAEPEEEVD----EDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKP--GKVERVKKIR------ 269 (578)
T ss_pred hhccceEecCceEEEEeeccccccc----ccccccccEEEEeCCCCCCCHHHHHHHHHhcCC--CceEEEEeec------
Confidence 54 2 46889999999987643211 111234578999999999999999999999843 7899998754
Q ss_pred CccEEEEEeccccccc
Q 015974 381 GKGIAYVLFKTRDNWI 396 (397)
Q Consensus 381 ~kGfAFV~F~s~e~A~ 396 (397)
+||||+|.+.++|.
T Consensus 270 --gfAFVeF~s~e~A~ 283 (578)
T TIGR01648 270 --DYAFVHFEDREDAV 283 (578)
T ss_pred --CeEEEEeCCHHHHH
Confidence 49999999998885
No 27
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.72 E-value=9.8e-17 Score=165.62 Aligned_cols=147 Identities=19% Similarity=0.306 Sum_probs=114.9
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.++|||+|||+.+|+++|+.+|+.||.|..|.|+.++ .+|.++|||||+|.+.++|..|| .|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~-----------------~~g~~~g~afV~f~~~e~A~~A~~~l 248 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDP-----------------ETGRSKGFGFIQFHDAEEAKEALEVM 248 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC-----------------CCCccceEEEEEECCHHHHHHHHHhc
Confidence 6899999999999999999999999999999997654 23457799999999999999999 69
Q ss_pred cCceecceeeEEecCCCCcccc---------------------------------CC-----------C-----------
Q 015974 304 NMAVIGGNHIRLDRACPPRKKL---------------------------------KG-----------E----------- 328 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~---------------------------------~~-----------~----------- 328 (397)
||..|.|+.|.|.++....... .. .
T Consensus 249 ~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (457)
T TIGR01622 249 NGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRD 328 (457)
T ss_pred CCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccc
Confidence 9999999999999953110000 00 0
Q ss_pred -----CCC---------------------ccccccceecCCCCccCc----------HHHHHHHhccCCCCCCCeEEEEE
Q 015974 329 -----DAP---------------------LYDIKKTVFVGNLPFDVK----------DEEIYQLFCGLNDLESSVEAVRV 372 (397)
Q Consensus 329 -----~~~---------------------~~~~~~tLfVgNLp~~vt----------eedL~~~F~~f~~~~G~I~~Vri 372 (397)
..+ ...+..+|+|.||....+ .++|++.|..| |.|..|.|
T Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~----G~v~~v~v 404 (457)
T TIGR01622 329 GIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKY----GGVVHIYV 404 (457)
T ss_pred ccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhc----CCeeEEEE
Confidence 000 113457888899854433 36889999999 99999998
Q ss_pred eeCCCCCCCccEEEEEeccccccc
Q 015974 373 IRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 373 ~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
... ...|++||.|.+.++|.
T Consensus 405 ~~~----~~~G~~fV~F~~~e~A~ 424 (457)
T TIGR01622 405 DTK----NSAGKIYLKFSSVDAAL 424 (457)
T ss_pred eCC----CCceeEEEEECCHHHHH
Confidence 643 46799999999999885
No 28
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.71 E-value=2.3e-18 Score=175.88 Aligned_cols=155 Identities=21% Similarity=0.353 Sum_probs=131.5
Q ss_pred cCCCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHH
Q 015974 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (397)
Q Consensus 220 ~~~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~ 299 (397)
.++++.+|||+-.|+..++.-+|.+||+.+|.|..|+|+.+. ++++++|.|||+|.+.+++..
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr-----------------~s~rskgi~Yvef~D~~sVp~ 236 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDR-----------------NSRRSKGIAYVEFCDEQSVPL 236 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccc-----------------cchhhcceeEEEEecccchhh
Confidence 456778999999999999999999999999999999997764 345688999999999999999
Q ss_pred HHHhcCceecceeeEEecCCCCccccCCCCCC------ccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEe
Q 015974 300 ALAFNMAVIGGNHIRLDRACPPRKKLKGEDAP------LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVI 373 (397)
Q Consensus 300 Al~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~------~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~ 373 (397)
||.|.|+.+.|.+|.|+.....+... ....+ ...+-..||||||++++++++|+.+|.+| |.|+.|.++
T Consensus 237 aiaLsGqrllg~pv~vq~sEaeknr~-a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepf----g~Ie~v~l~ 311 (549)
T KOG0147|consen 237 AIALSGQRLLGVPVIVQLSEAEKNRA-ANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPF----GKIENVQLT 311 (549)
T ss_pred HhhhcCCcccCceeEecccHHHHHHH-HhccccccccccccchhhhhhcccccCchHHHHhhhccCc----ccceeeeec
Confidence 99999999999999999986432221 10000 01122339999999999999999999999 999999999
Q ss_pred eCCCCCCCccEEEEEeccccccc
Q 015974 374 RHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 374 rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+|..||.++|||||+|.+.++|.
T Consensus 312 ~d~~tG~skgfGfi~f~~~~~ar 334 (549)
T KOG0147|consen 312 KDSETGRSKGFGFITFVNKEDAR 334 (549)
T ss_pred cccccccccCcceEEEecHHHHH
Confidence 99989999999999999988774
No 29
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.68 E-value=8e-17 Score=153.82 Aligned_cols=123 Identities=19% Similarity=0.375 Sum_probs=111.9
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH-hcC
Q 015974 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNM 305 (397)
Q Consensus 227 tVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~-lng 305 (397)
.|||||||..+++.+|+.+|.+||.|.+|.|+. -||||...+...+.-||. |+|
T Consensus 4 KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvK-------------------------NYgFVHiEdktaaedairNLhg 58 (346)
T KOG0109|consen 4 KLFIGNLPREATEQELRSLFEQYGKVLECDIVK-------------------------NYGFVHIEDKTAAEDAIRNLHG 58 (346)
T ss_pred chhccCCCcccchHHHHHHHHhhCceEeeeeec-------------------------ccceEEeecccccHHHHhhccc
Confidence 599999999999999999999999999999843 399999999999999995 999
Q ss_pred ceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEE
Q 015974 306 AVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIA 385 (397)
Q Consensus 306 ~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfA 385 (397)
..|+|..|.|..+..+ ...+.+|+||||.+.++..+|+..|+.| |.|..|.|++| |+
T Consensus 59 YtLhg~nInVeaSksK-----------sk~stkl~vgNis~tctn~ElRa~fe~y----gpviecdivkd--------y~ 115 (346)
T KOG0109|consen 59 YTLHGVNINVEASKSK-----------SKASTKLHVGNISPTCTNQELRAKFEKY----GPVIECDIVKD--------YA 115 (346)
T ss_pred ceecceEEEEEecccc-----------CCCccccccCCCCccccCHHHhhhhccc----CCceeeeeecc--------ee
Confidence 9999999999998754 2246899999999999999999999999 99999999877 99
Q ss_pred EEEecccccccC
Q 015974 386 YVLFKTRDNWIE 397 (397)
Q Consensus 386 FV~F~s~e~A~e 397 (397)
||.|.-.++|.+
T Consensus 116 fvh~d~~eda~~ 127 (346)
T KOG0109|consen 116 FVHFDRAEDAVE 127 (346)
T ss_pred EEEEeeccchHH
Confidence 999999888763
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.66 E-value=3.9e-16 Score=157.84 Aligned_cols=144 Identities=25% Similarity=0.378 Sum_probs=123.1
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hhc
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (397)
..|||.||+..+|...|..+|+.||.|.+|++.++.. | ++|| ||+|.++++|..|+ .+|
T Consensus 77 ~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~------------------g-~kg~-FV~f~~e~~a~~ai~~~n 136 (369)
T KOG0123|consen 77 SLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDEN------------------G-SKGY-FVQFESEESAKKAIEKLN 136 (369)
T ss_pred ceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCC------------------C-ceee-EEEeCCHHHHHHHHHHhc
Confidence 3399999999999999999999999999999987641 2 7799 99999999999999 699
Q ss_pred CceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccE
Q 015974 305 MAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI 384 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGf 384 (397)
|..+.|+.|.|............... ....-..+||.|++.+++++.|..+|..+ |.|.++.++.+.. |.++||
T Consensus 137 g~ll~~kki~vg~~~~~~er~~~~~~-~~~~~t~v~vk~~~~~~~~~~l~~~f~~~----g~i~s~~v~~~~~-g~~~~~ 210 (369)
T KOG0123|consen 137 GMLLNGKKIYVGLFERKEEREAPLGE-YKKRFTNVYVKNLEEDSTDEELKDLFSAY----GSITSVAVMRDSI-GKSKGF 210 (369)
T ss_pred CcccCCCeeEEeeccchhhhcccccc-hhhhhhhhheeccccccchHHHHHhhccc----CcceEEEEeecCC-CCCCCc
Confidence 99999999999988764332222212 22334689999999999999999999999 9999999999964 779999
Q ss_pred EEEEecccccc
Q 015974 385 AYVLFKTRDNW 395 (397)
Q Consensus 385 AFV~F~s~e~A 395 (397)
|||.|.++++|
T Consensus 211 gfv~f~~~e~a 221 (369)
T KOG0123|consen 211 GFVNFENPEDA 221 (369)
T ss_pred cceeecChhHH
Confidence 99999998766
No 31
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=8.4e-15 Score=132.29 Aligned_cols=141 Identities=21% Similarity=0.315 Sum_probs=112.0
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
+..++|||||||.++.+.+|..+|.+||.|..|.|... .+. -+||||+|.++.+|+-||
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r----~g~----------------ppfafVeFEd~RDAeDAiy 63 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNR----PGP----------------PPFAFVEFEDPRDAEDAIY 63 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccC----CCC----------------CCeeEEEecCccchhhhhh
Confidence 45789999999999999999999999999999987321 122 269999999999999999
Q ss_pred HhcCceecceeeEEecCCCCccccC----------CC-------CCCccccccceecCCCCccCcHHHHHHHhccCCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPPRKKLK----------GE-------DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLE 364 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~~~----------~~-------~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~ 364 (397)
..+|..++|+.|+|.++..-..... +. ..+.......|.|.+||.+.+++||++++..-
T Consensus 64 gRdGYdydg~rLRVEfprggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmRea---- 139 (241)
T KOG0105|consen 64 GRDGYDYDGCRLRVEFPRGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREA---- 139 (241)
T ss_pred cccccccCcceEEEEeccCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhh----
Confidence 5999999999999999853221100 00 01223335689999999999999999999997
Q ss_pred CCeEEEEEeeCCCCCCCccEEEEEeccccc
Q 015974 365 SSVEAVRVIRHPHMRVGKGIAYVLFKTRDN 394 (397)
Q Consensus 365 G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~ 394 (397)
|.|....+.+|. ++.|.|...++
T Consensus 140 GdvCfadv~rDg-------~GvV~~~r~eD 162 (241)
T KOG0105|consen 140 GDVCFADVQRDG-------VGVVEYLRKED 162 (241)
T ss_pred CCeeeeeeeccc-------ceeeeeeehhh
Confidence 899999998872 67888877654
No 32
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.58 E-value=1.5e-14 Score=128.23 Aligned_cols=82 Identities=20% Similarity=0.394 Sum_probs=73.4
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+++|.+||.|.+|.|+.++ .++.++|||||+|.+.++|+.||
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~-----------------~tg~~kGfaFV~F~~~e~A~~Al~ 94 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDR-----------------ETGRSRGFGFVNFNDEGAATAAIS 94 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecC-----------------CCCCcceEEEEEECCHHHHHHHHH
Confidence 346789999999999999999999999999999997654 24567799999999999999999
Q ss_pred HhcCceecceeeEEecCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (397)
.||+..|.|+.|.|.++..+
T Consensus 95 ~lng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 95 EMDGKELNGRHIRVNPANDR 114 (144)
T ss_pred HcCCCEECCEEEEEEeCCcC
Confidence 59999999999999998754
No 33
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.57 E-value=2e-14 Score=145.57 Aligned_cols=149 Identities=21% Similarity=0.274 Sum_probs=115.1
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHh
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (397)
...-|-+++|||.+|+++|++||+.|+ |+++.+.+. +|+..|-|||+|.+.++++.||+.
T Consensus 9 ~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~-------------------~Gr~sGeA~Ve~~seedv~~Alkk 68 (510)
T KOG4211|consen 9 TAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR-------------------NGRPSGEAYVEFTSEEDVEKALKK 68 (510)
T ss_pred cceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc-------------------CCCcCcceEEEeechHHHHHHHHh
Confidence 356689999999999999999999998 677665332 345669999999999999999999
Q ss_pred cCceecceeeEEecCCCCccccCCCC--CCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCC
Q 015974 304 NMAVIGGNHIRLDRACPPRKKLKGED--APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~--~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~ 381 (397)
+...+..|.|.|-.+........... .....+...|.+++||+.||++||.+||+.... ... -|.++.++ .+++
T Consensus 69 dR~~mg~RYIEVf~~~~~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~I--v~~-gi~l~~d~-rgR~ 144 (510)
T KOG4211|consen 69 DRESMGHRYIEVFTAGGAEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEI--VPD-GILLPMDQ-RGRP 144 (510)
T ss_pred hHHHhCCceEEEEccCCccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcc--ccc-ceeeeccC-CCCc
Confidence 99999999999988754322111100 111134578999999999999999999998732 112 35566665 4889
Q ss_pred ccEEEEEeccccccc
Q 015974 382 KGIAYVLFKTRDNWI 396 (397)
Q Consensus 382 kGfAFV~F~s~e~A~ 396 (397)
.|-|||+|.+.+.|+
T Consensus 145 tGEAfVqF~sqe~ae 159 (510)
T KOG4211|consen 145 TGEAFVQFESQESAE 159 (510)
T ss_pred ccceEEEecCHHHHH
Confidence 999999999988875
No 34
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.2e-14 Score=137.69 Aligned_cols=57 Identities=19% Similarity=0.320 Sum_probs=54.6
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.|.|||..||....+.+|.++|-+| |.|.+..+..|+.|+.++.||||.|+++.+|+
T Consensus 285 GCNlFIYHLPQEFgDaEliQmF~PF----GhivSaKVFvDRATNQSKCFGFVSfDNp~SaQ 341 (371)
T KOG0146|consen 285 GCNLFIYHLPQEFGDAELIQMFLPF----GHIVSAKVFVDRATNQSKCFGFVSFDNPASAQ 341 (371)
T ss_pred cceEEEEeCchhhccHHHHHHhccc----cceeeeeeeehhccccccceeeEecCCchhHH
Confidence 6899999999999999999999999 99999999999999999999999999998775
No 35
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.53 E-value=9.8e-14 Score=128.64 Aligned_cols=143 Identities=30% Similarity=0.498 Sum_probs=111.0
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.++|||+|||+.+|+++|..+|..||.|..|.+..+. .++.++|||||.|.+.++|..|+ .+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~-----------------~~~~~~g~~~v~f~~~~~~~~a~~~~ 177 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDR-----------------ETGKSRGFAFVEFESEESAEKAIEEL 177 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecc-----------------ccCccCceEEEEecCHHHHHHHHHHc
Confidence 6899999999999999999999999999999886653 24567799999999999999999 68
Q ss_pred cCceecceeeEEecCCC---CccccC------------CCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeE
Q 015974 304 NMAVIGGNHIRLDRACP---PRKKLK------------GEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE 368 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~---~~k~~~------------~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~ 368 (397)
++..|.|+.|.|.++.. +..... ............+++++++..++...+..+|..+ |.+.
T Consensus 178 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 253 (306)
T COG0724 178 NGKELEGRPLRVQKAQPASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSR----GDIV 253 (306)
T ss_pred CCCeECCceeEeeccccccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhcccc----ccce
Confidence 99999999999999642 111111 0001223456789999999999999999999998 7887
Q ss_pred EEEEeeCCCCCCCccEEEEE
Q 015974 369 AVRVIRHPHMRVGKGIAYVL 388 (397)
Q Consensus 369 ~Vri~rd~~tg~~kGfAFV~ 388 (397)
.+.+...........+.++.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~ 273 (306)
T COG0724 254 RASLPPSKDGKIPKSRSFVG 273 (306)
T ss_pred eeeccCCCCCcccccccccc
Confidence 77766665433344444433
No 36
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.52 E-value=1.1e-13 Score=128.61 Aligned_cols=141 Identities=26% Similarity=0.385 Sum_probs=113.0
Q ss_pred cCEEEEecCCCCCcHHHHHH----HhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 225 LRTIFVGNLPLKVKKKTLIK----EFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~----~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
..||||.||+..+..++|+. +|++||.|..|.... +.+.+|-|||+|.+.+.|-.|
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k--------------------t~KmRGQA~VvFk~~~~As~A 68 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK--------------------TPKMRGQAFVVFKETEAASAA 68 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC--------------------CCCccCceEEEecChhHHHHH
Confidence 45999999999999998887 999999999887632 335679999999999999999
Q ss_pred H-HhcCceecceeeEEecCCCCccccCC---------------------------C----------C----CCccccccc
Q 015974 301 L-AFNMAVIGGNHIRLDRACPPRKKLKG---------------------------E----------D----APLYDIKKT 338 (397)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~~k~~~~---------------------------~----------~----~~~~~~~~t 338 (397)
+ .|+|..|.|++|+|++|......... . . .....+..+
T Consensus 69 ~r~l~gfpFygK~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~i 148 (221)
T KOG4206|consen 69 LRALQGFPFYGKPMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNI 148 (221)
T ss_pred HHHhcCCcccCchhheecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceE
Confidence 9 79999999999999998532100000 0 0 112456789
Q ss_pred eecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccc
Q 015974 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDN 394 (397)
Q Consensus 339 LfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~ 394 (397)
+|+.|||..++.+.|..+|++| .....||++... .+.|||+|.+...
T Consensus 149 lf~~niP~es~~e~l~~lf~qf----~g~keir~i~~~-----~~iAfve~~~d~~ 195 (221)
T KOG4206|consen 149 LFLTNIPSESESEMLSDLFEQF----PGFKEIRLIPPR-----SGIAFVEFLSDRQ 195 (221)
T ss_pred EEEecCCcchhHHHHHHHHhhC----cccceeEeccCC-----CceeEEecchhhh
Confidence 9999999999999999999999 567888887653 5799999987654
No 37
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.48 E-value=6.6e-14 Score=139.79 Aligned_cols=76 Identities=25% Similarity=0.419 Sum_probs=67.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.+.||||-|+..+|+.+|+++|++||.|++|.|++++ .+.+||||||.|.+.+.|..|| .|
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~------------------~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP------------------DGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecc------------------cccccceeEEEEehHHHHHHHHHhh
Confidence 5779999999999999999999999999999998875 3467899999999999999999 69
Q ss_pred cCc-eecc--eeeEEecC
Q 015974 304 NMA-VIGG--NHIRLDRA 318 (397)
Q Consensus 304 ng~-~l~G--r~I~V~~a 318 (397)
||. .+.| .+|.|.++
T Consensus 186 ng~~tmeGcs~PLVVkFA 203 (510)
T KOG0144|consen 186 NGTQTMEGCSQPLVVKFA 203 (510)
T ss_pred ccceeeccCCCceEEEec
Confidence 987 5666 46888887
No 38
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.47 E-value=2.2e-13 Score=103.51 Aligned_cols=69 Identities=35% Similarity=0.591 Sum_probs=61.7
Q ss_pred EEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH-hcCc
Q 015974 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMA 306 (397)
Q Consensus 228 VFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~-lng~ 306 (397)
|||+|||+++|+++|+.+|+.||.|..+.++... .+.++|||||+|.+.++|..|+. ++|.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~------------------~~~~~~~a~V~F~~~~~a~~a~~~l~g~ 62 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNS------------------SGKSKGYAFVEFESEEDAEKALEELNGK 62 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEET------------------TSSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccc------------------cccccceEEEEEcCHHHHHHHHHHcCCC
Confidence 7999999999999999999999999999886641 23456999999999999999995 9999
Q ss_pred eecceeeE
Q 015974 307 VIGGNHIR 314 (397)
Q Consensus 307 ~l~Gr~I~ 314 (397)
.+.|+.|+
T Consensus 63 ~~~~~~ir 70 (70)
T PF00076_consen 63 KINGRKIR 70 (70)
T ss_dssp EETTEEEE
T ss_pred EECccCcC
Confidence 99999885
No 39
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.45 E-value=1.5e-13 Score=130.49 Aligned_cols=114 Identities=24% Similarity=0.410 Sum_probs=94.3
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHh
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (397)
..||||||||+..+|++=|..+|++.|.|..+.|+.+
T Consensus 5 ~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~------------------------------------------- 41 (321)
T KOG0148|consen 5 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD------------------------------------------- 41 (321)
T ss_pred CCceEEeeccChhhHHHHHHHHHHhccccccceeehh-------------------------------------------
Confidence 4799999999999999999999999999988877321
Q ss_pred cCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCcc
Q 015974 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kG 383 (397)
.|.|.++..+..+.+. ......-|||+.|...++-++|++.|.+| |+|..++|++|..|++++|
T Consensus 42 --------e~~v~wa~~p~nQsk~----t~~~hfhvfvgdls~eI~~e~lr~aF~pF----GevS~akvirD~~T~KsKG 105 (321)
T KOG0148|consen 42 --------ELKVNWATAPGNQSKP----TSNQHFHVFVGDLSPEIDNEKLREAFAPF----GEVSDAKVIRDMNTGKSKG 105 (321)
T ss_pred --------hhccccccCcccCCCC----ccccceeEEehhcchhcchHHHHHHhccc----cccccceEeecccCCcccc
Confidence 4566666654221111 11223568999999999999999999999 9999999999999999999
Q ss_pred EEEEEeccccccc
Q 015974 384 IAYVLFKTRDNWI 396 (397)
Q Consensus 384 fAFV~F~s~e~A~ 396 (397)
||||.|-+.++|+
T Consensus 106 YgFVSf~~k~dAE 118 (321)
T KOG0148|consen 106 YGFVSFPNKEDAE 118 (321)
T ss_pred eeEEeccchHHHH
Confidence 9999999988875
No 40
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.43 E-value=4.3e-13 Score=128.46 Aligned_cols=76 Identities=30% Similarity=0.395 Sum_probs=69.3
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhc
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (397)
.++|||+|||+.+|+++|+++|+.||.|.+|+|+.+. .++|||||+|.++++|..||.||
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~--------------------~~~GfAFVtF~d~eaAe~AllLn 63 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN--------------------ERSQIAYVTFKDPQGAETALLLS 63 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC--------------------CCCCEEEEEeCcHHHHHHHHHhc
Confidence 5789999999999999999999999999999996542 13489999999999999999999
Q ss_pred CceecceeeEEecCCC
Q 015974 305 MAVIGGNHIRLDRACP 320 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (397)
|..|.|+.|.|.++..
T Consensus 64 G~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 64 GATIVDQSVTITPAED 79 (260)
T ss_pred CCeeCCceEEEEeccC
Confidence 9999999999999863
No 41
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=1.6e-12 Score=132.74 Aligned_cols=156 Identities=24% Similarity=0.367 Sum_probs=110.0
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
..-++.||||+||++++++.|...|..||.+. |.++.........+ ...+.||+|+.|.++.++..-|
T Consensus 256 ~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~p-----------pkGs~~YvflvFe~E~sV~~Ll 323 (520)
T KOG0129|consen 256 PRYSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAP-----------PKGSYGYVFLVFEDERSVQSLL 323 (520)
T ss_pred cccccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCC-----------CCCcccEEEEEecchHHHHHHH
Confidence 45678999999999999999999999999876 77754222222222 2223469999999999988655
Q ss_pred -HhcCceecceeeEEecCCCCccc------------cCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeE
Q 015974 302 -AFNMAVIGGNHIRLDRACPPRKK------------LKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE 368 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~k~------------~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~ 368 (397)
++.. .-.+..+.|.......+. ..-+.....++.+|||||+||.-++.++|..+|... ||.|.
T Consensus 324 ~aC~~-~~~~~yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~l---yGgV~ 399 (520)
T KOG0129|consen 324 SACSE-GEGNYYFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDL---FGGVL 399 (520)
T ss_pred HHHhh-cccceEEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHh---cCceE
Confidence 2111 001111222211111110 001123346788999999999999999999999865 59999
Q ss_pred EEEEeeCCCCCCCccEEEEEecccc
Q 015974 369 AVRVIRHPHMRVGKGIAYVLFKTRD 393 (397)
Q Consensus 369 ~Vri~rd~~tg~~kGfAFV~F~s~e 393 (397)
+|-|-.|++-+.++|-|-|+|.+..
T Consensus 400 yaGIDtD~k~KYPkGaGRVtFsnqq 424 (520)
T KOG0129|consen 400 YVGIDTDPKLKYPKGAGRVTFSNQQ 424 (520)
T ss_pred EEEeccCcccCCCCCcceeeecccH
Confidence 9999999888999999999998864
No 42
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=4.1e-13 Score=114.94 Aligned_cols=80 Identities=20% Similarity=0.343 Sum_probs=69.9
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
+.++|||||||++-+|+++|+++|++||.|..|.|-.+.+ +....|||||+|.+.++|..||.
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~-----------------kktpCGFCFVeyy~~~dA~~Alr 96 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRF-----------------KKTPCGFCFVEYYSRDDAEDALR 96 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccC-----------------CcCccceEEEEEecchhHHHHHH
Confidence 4489999999999999999999999999999887755442 22345999999999999999995
Q ss_pred -hcCceecceeeEEecCC
Q 015974 303 -FNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 303 -lng~~l~Gr~I~V~~a~ 319 (397)
++|+.|+.++|+|+|-.
T Consensus 97 yisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 97 YISGTRLDDRPIRIDWDA 114 (153)
T ss_pred HhccCcccccceeeeccc
Confidence 99999999999999964
No 43
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.36 E-value=3.5e-12 Score=97.95 Aligned_cols=69 Identities=28% Similarity=0.524 Sum_probs=58.4
Q ss_pred EEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH-hcCc
Q 015974 228 IFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FNMA 306 (397)
Q Consensus 228 VFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~-lng~ 306 (397)
|||+|||+.+++++|+++|+.||.|..|++.... + +..+|+|||+|.++++|..|+. +++.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~-----------------~-~~~~~~a~v~f~~~~~a~~al~~~~~~ 62 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNK-----------------D-GQSRGFAFVEFSSEEDAKRALELLNGK 62 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEEST-----------------T-SSEEEEEEEEESSHHHHHHHHHHHTTE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeee-----------------c-cccCCEEEEEeCCHHHHHHHHHHCCCc
Confidence 7999999999999999999999999999886532 1 3456999999999999999995 6669
Q ss_pred eecceeeE
Q 015974 307 VIGGNHIR 314 (397)
Q Consensus 307 ~l~Gr~I~ 314 (397)
.|.|+.|+
T Consensus 63 ~~~g~~l~ 70 (70)
T PF14259_consen 63 EIDGRKLR 70 (70)
T ss_dssp EETTEEEE
T ss_pred EECCEEcC
Confidence 99999874
No 44
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.34 E-value=1.8e-12 Score=121.21 Aligned_cols=79 Identities=24% Similarity=0.358 Sum_probs=70.9
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhc
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (397)
-..||||||+|.++.+.|+.+|.+||.|++..|+++. .+|+|+||+||+|.+.++|.+|++-.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~-----------------~t~rskGyGfVTf~d~~aa~rAc~dp 74 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDK-----------------NTGRSKGYGFVTFRDAEAATRACKDP 74 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEecc-----------------CCccccceeeEEeecHHHHHHHhcCC
Confidence 4679999999999999999999999999999998775 46778899999999999999999777
Q ss_pred CceecceeeEEecCCC
Q 015974 305 MAVIGGNHIRLDRACP 320 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (397)
.-.|+||+..|.++.-
T Consensus 75 ~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 75 NPIIDGRKANCNLASL 90 (247)
T ss_pred CCcccccccccchhhh
Confidence 7789999999888753
No 45
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.33 E-value=5.4e-12 Score=119.41 Aligned_cols=76 Identities=26% Similarity=0.264 Sum_probs=68.8
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhc
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (397)
..||||+||++.+|+++|++||+.||.|.+|+|+++. ...|||||+|.++++|..||.|+
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~--------------------et~gfAfVtF~d~~aaetAllLn 64 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG--------------------EYACTAYVTFKDAYALETAVLLS 64 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC--------------------CcceEEEEEECCHHHHHHHHhcC
Confidence 5799999999999999999999999999999996542 23479999999999999999999
Q ss_pred CceecceeeEEecCCC
Q 015974 305 MAVIGGNHIRLDRACP 320 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (397)
|..|.+++|.|..+..
T Consensus 65 Ga~l~d~~I~It~~~~ 80 (243)
T PLN03121 65 GATIVDQRVCITRWGQ 80 (243)
T ss_pred CCeeCCceEEEEeCcc
Confidence 9999999999988753
No 46
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=3e-13 Score=122.00 Aligned_cols=82 Identities=23% Similarity=0.380 Sum_probs=75.0
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
-+++.-|||||||+..|+.+|..+|++||.|+.|.|+++. .+|+|+||||+.|.+..+.-.|+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk-----------------~TGKSKGFaFLcYEDQRSTILAV 94 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDK-----------------KTGKSKGFAFLCYEDQRSTILAV 94 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecC-----------------CCCcccceEEEEecCccceEEEE
Confidence 3457889999999999999999999999999999998875 57788999999999999988888
Q ss_pred -HhcCceecceeeEEecCCC
Q 015974 302 -AFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~ 320 (397)
.|||..+.||.|+|++...
T Consensus 95 DN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 95 DNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred eccCCceecceeEEeeeccc
Confidence 6999999999999999864
No 47
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.28 E-value=2e-11 Score=130.02 Aligned_cols=82 Identities=21% Similarity=0.423 Sum_probs=73.3
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+.+++++|+.+|+.||.|.+|+|.+++ .++.++|||||+|.+.++|..|| .
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~-----------------~tgksKGfGFVeFe~~e~A~kAI~a 265 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP-----------------TGRGHKGYGFIEYNNLQSQSEAIAS 265 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecC-----------------CCCCcCCeEEEEECCHHHHHHHHHH
Confidence 35789999999999999999999999999999997764 23457799999999999999999 6
Q ss_pred hcCceecceeeEEecCCCCc
Q 015974 303 FNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (397)
||+..|+|+.|+|.++..+.
T Consensus 266 mNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 266 MNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred hCCCeeCCeEEEEEecCCCc
Confidence 99999999999999987543
No 48
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.28 E-value=3e-11 Score=121.11 Aligned_cols=149 Identities=19% Similarity=0.306 Sum_probs=118.7
Q ss_pred cCEEEEecCCCCCcHHHHHHHhc-ccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs-~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
.|.|||+|||+++..++|+.+|. +.|.|+-|.|+.+. +|+++|||.|+|.+++.+++|+ .
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~------------------~GK~rGcavVEFk~~E~~qKa~E~ 105 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE------------------SGKARGCAVVEFKDPENVQKALEK 105 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc------------------CCCcCCceEEEeeCHHHHHHHHHH
Confidence 57799999999999999999999 68999999997663 4567799999999999999999 5
Q ss_pred hcCceecceeeEEecCCCCcccc-----------------------------------------CCCCCC----------
Q 015974 303 FNMAVIGGNHIRLDRACPPRKKL-----------------------------------------KGEDAP---------- 331 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~-----------------------------------------~~~~~~---------- 331 (397)
||.+.+.||+|.|.--......+ ...+.+
T Consensus 106 lnk~~~~GR~l~vKEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~ 185 (608)
T KOG4212|consen 106 LNKYEVNGRELVVKEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMS 185 (608)
T ss_pred hhhccccCceEEEeccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccc
Confidence 99999999999986532100000 000000
Q ss_pred -------------------------ccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEE
Q 015974 332 -------------------------LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAY 386 (397)
Q Consensus 332 -------------------------~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAF 386 (397)
..+-...+||.||.+.+....|++.|.-. |.|++|.+-.|.. |.++|||.
T Consensus 186 ~~~~~~~~~~lfgl~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmA----Gkv~~vdf~idKe-G~s~G~~v 260 (608)
T KOG4212|consen 186 NDYNNSSNYNLFGLSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMA----GKVQSVDFSIDKE-GNSRGFAV 260 (608)
T ss_pred cccccchhhhcccchhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccc----eeeeeeceeeccc-cccCCeeE
Confidence 01114579999999999999999999887 9999999999965 89999999
Q ss_pred EEeccccccc
Q 015974 387 VLFKTRDNWI 396 (397)
Q Consensus 387 V~F~s~e~A~ 396 (397)
++|.++-.|.
T Consensus 261 i~y~hpveav 270 (608)
T KOG4212|consen 261 IEYDHPVEAV 270 (608)
T ss_pred EEecchHHHH
Confidence 9998775553
No 49
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.27 E-value=5.3e-11 Score=110.65 Aligned_cols=153 Identities=24% Similarity=0.343 Sum_probs=106.4
Q ss_pred cCCCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHH
Q 015974 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (397)
Q Consensus 220 ~~~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~ 299 (397)
++...-|||||.+||.++..-+|+.+|..|-.-+.+.|.... ..+.+ .+-+|||+|.+...|.+
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Ts--k~~~~--------------~~pvaFatF~s~q~A~a 92 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTS--KGDQV--------------CKPVAFATFTSHQFALA 92 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeecc--CCCcc--------------ccceEEEEecchHHHHH
Confidence 344557999999999999999999999998766666663321 11112 12599999999999999
Q ss_pred HH-HhcCceec---ceeeEEecCCCCc--cccCCCCC------------------------------C------------
Q 015974 300 AL-AFNMAVIG---GNHIRLDRACPPR--KKLKGEDA------------------------------P------------ 331 (397)
Q Consensus 300 Al-~lng~~l~---Gr~I~V~~a~~~~--k~~~~~~~------------------------------~------------ 331 (397)
|+ +|||..|+ +..|++..+.... +..++... +
T Consensus 93 amnaLNGvrFDpE~~stLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al 172 (284)
T KOG1457|consen 93 AMNALNGVRFDPETGSTLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADAL 172 (284)
T ss_pred HHHHhcCeeeccccCceeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccC
Confidence 99 79999995 5667877764211 00000000 0
Q ss_pred ---------------------------------ccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCC
Q 015974 332 ---------------------------------LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (397)
Q Consensus 332 ---------------------------------~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~t 378 (397)
....+.+|||.||..++++++|+++|+.|.. ...++|..
T Consensus 173 ~~~~~t~~~~l~a~~~~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~g----f~~l~~~~---- 244 (284)
T KOG1457|consen 173 KENDTTKSEALSAPDSKAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPG----FHILKIRA---- 244 (284)
T ss_pred CCccccchhhhhhhhhcCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCC----ceEEEEec----
Confidence 0011458999999999999999999999943 33344422
Q ss_pred CCCccEEEEEeccccccc
Q 015974 379 RVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 379 g~~kGfAFV~F~s~e~A~ 396 (397)
..+...|||.|.+.+.|.
T Consensus 245 ~~g~~vaf~~~~~~~~at 262 (284)
T KOG1457|consen 245 RGGMPVAFADFEEIEQAT 262 (284)
T ss_pred CCCcceEeecHHHHHHHH
Confidence 234568999999887663
No 50
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.4e-11 Score=110.75 Aligned_cols=75 Identities=27% Similarity=0.464 Sum_probs=67.9
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.+.||||||+..+++.+|...|..||+|.+|.|-..| -|||||+|.++.+|..|+ .|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----------------------PGfAFVEFed~RDA~DAvr~L 67 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----------------------PGFAFVEFEDPRDAEDAVRYL 67 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----------------------CCceEEeccCcccHHHHHhhc
Confidence 5779999999999999999999999999999884433 289999999999999999 79
Q ss_pred cCceecceeeEEecCCCC
Q 015974 304 NMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (397)
+|..|.|..|.|.++.-.
T Consensus 68 DG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 68 DGKDICGSRIRVELSTGR 85 (195)
T ss_pred CCccccCceEEEEeecCC
Confidence 999999999999998643
No 51
>PLN03213 repressor of silencing 3; Provisional
Probab=99.24 E-value=2.1e-11 Score=123.69 Aligned_cols=75 Identities=28% Similarity=0.423 Sum_probs=67.2
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCH--HHHHHHH-
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSE--QSTEAAL- 301 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~--e~A~~Al- 301 (397)
..+||||||++.+|+++|+.+|+.||.|.+|.|++. +| ||||||+|.+. .++.+||
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE-------------------TG--RGFAFVEMssdddaEeeKAIS 68 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT-------------------KG--RSFAYIDFSPSSTNSLTKLFS 68 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc-------------------cC--CceEEEEecCCcHHHHHHHHH
Confidence 577999999999999999999999999999999632 22 59999999988 6788999
Q ss_pred HhcCceecceeeEEecCCC
Q 015974 302 AFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~ 320 (397)
.|||..|.|+.|+|..+.+
T Consensus 69 aLNGAEWKGR~LKVNKAKP 87 (759)
T PLN03213 69 TYNGCVWKGGRLRLEKAKE 87 (759)
T ss_pred HhcCCeecCceeEEeeccH
Confidence 6999999999999999865
No 52
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.24 E-value=3.2e-11 Score=121.32 Aligned_cols=80 Identities=21% Similarity=0.287 Sum_probs=69.9
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.++|||+|||+.+|+++|+++|++||.|..|+|+++. .++.++|||||+|.+.++|..|| .|
T Consensus 193 ~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~-----------------~tg~~kG~aFV~F~~~e~A~~Ai~~l 255 (346)
T TIGR01659 193 DTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDK-----------------LTGTPRGVAFVRFNKREEAQEAISAL 255 (346)
T ss_pred cceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecC-----------------CCCccceEEEEEECCHHHHHHHHHHh
Confidence 4679999999999999999999999999999987653 24556799999999999999999 69
Q ss_pred cCceecc--eeeEEecCCCC
Q 015974 304 NMAVIGG--NHIRLDRACPP 321 (397)
Q Consensus 304 ng~~l~G--r~I~V~~a~~~ 321 (397)
|+..+.+ ++|.|.++...
T Consensus 256 ng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 256 NNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CCCccCCCceeEEEEECCcc
Confidence 9998866 68999988653
No 53
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.22 E-value=3.5e-11 Score=115.85 Aligned_cols=79 Identities=25% Similarity=0.367 Sum_probs=72.0
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
.-+||||+-|++++++..|+..|+.||+|..|+|+++. -+|+++|||||+|.++.++..|. .
T Consensus 100 Py~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~-----------------vTgkskGYAFIeye~erdm~~AYK~ 162 (335)
T KOG0113|consen 100 PYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDK-----------------VTGKSKGYAFIEYEHERDMKAAYKD 162 (335)
T ss_pred ccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeec-----------------ccCCccceEEEEeccHHHHHHHHHh
Confidence 47999999999999999999999999999999998765 35677899999999999999999 6
Q ss_pred hcCceecceeeEEecCC
Q 015974 303 FNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (397)
.+|..|+|+.|.|+.-.
T Consensus 163 adG~~Idgrri~VDvER 179 (335)
T KOG0113|consen 163 ADGIKIDGRRILVDVER 179 (335)
T ss_pred ccCceecCcEEEEEecc
Confidence 89999999999998753
No 54
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.21 E-value=3.5e-11 Score=117.12 Aligned_cols=78 Identities=22% Similarity=0.411 Sum_probs=71.1
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.+.|+|.|||+...+.||+.+|.+||+|.+|.|+. +...|+||+||+|.+.++|++|- +|
T Consensus 96 pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIf-------------------NERGSKGFGFVTmen~~dadRARa~L 156 (376)
T KOG0125|consen 96 PKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIF-------------------NERGSKGFGFVTMENPADADRARAEL 156 (376)
T ss_pred CceeEeecCCccccCccHHHHHHhhCceeeEEEEe-------------------ccCCCCccceEEecChhhHHHHHHHh
Confidence 56799999999999999999999999999999854 34458899999999999999999 79
Q ss_pred cCceecceeeEEecCCCC
Q 015974 304 NMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (397)
||+.+.||+|.|..+...
T Consensus 157 Hgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 157 HGTVVEGRKIEVNNATAR 174 (376)
T ss_pred hcceeeceEEEEeccchh
Confidence 999999999999998753
No 55
>smart00362 RRM_2 RNA recognition motif.
Probab=99.21 E-value=8.1e-11 Score=87.97 Aligned_cols=71 Identities=39% Similarity=0.662 Sum_probs=62.3
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-HhcC
Q 015974 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (397)
Q Consensus 227 tVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng 305 (397)
+|||+|||..++.++|+.+|..||.|..+.+...+ +.++|+|||+|.+.+.|..|+ .+++
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-------------------~~~~~~~~v~f~~~~~a~~a~~~~~~ 61 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-------------------GKSKGFAFVEFESEEDAEKAIEALNG 61 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-------------------CCCCceEEEEeCCHHHHHHHHHHhCC
Confidence 49999999999999999999999999988885432 235689999999999999999 5899
Q ss_pred ceecceeeEEe
Q 015974 306 AVIGGNHIRLD 316 (397)
Q Consensus 306 ~~l~Gr~I~V~ 316 (397)
..+.|+.|.|.
T Consensus 62 ~~~~~~~i~v~ 72 (72)
T smart00362 62 TKLGGRPLRVE 72 (72)
T ss_pred cEECCEEEeeC
Confidence 99999998873
No 56
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.20 E-value=5.4e-11 Score=111.82 Aligned_cols=83 Identities=20% Similarity=0.252 Sum_probs=74.6
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
..+.++|-|.|||.++++.+|.++|..||.|..|.|.++. .+|.++|||||.|.+.++|.+||
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK-----------------~TG~~kGFAFVtF~sRddA~rAI 248 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDK-----------------ETGLSKGFAFVTFESRDDAARAI 248 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEcc-----------------ccCcccceEEEEEecHHHHHHHH
Confidence 3467899999999999999999999999999999886654 46677899999999999999999
Q ss_pred -HhcCceecceeeEEecCCCC
Q 015974 302 -AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~ 321 (397)
.|||.-++.--|+|.|+.|.
T Consensus 249 ~~LnG~gyd~LILrvEwskP~ 269 (270)
T KOG0122|consen 249 ADLNGYGYDNLILRVEWSKPS 269 (270)
T ss_pred HHccCcccceEEEEEEecCCC
Confidence 69999999999999999763
No 57
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.17 E-value=3.5e-11 Score=112.64 Aligned_cols=132 Identities=17% Similarity=0.386 Sum_probs=106.0
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-HhcC
Q 015974 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (397)
Q Consensus 227 tVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng 305 (397)
.||||+||+.+.+.+|..||..||.|..|.+. .||+||+|.+..+|.-|+ .+|+
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk-------------------------~gf~fv~fed~rda~Dav~~l~~ 57 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK-------------------------NGFGFVEFEDPRDADDAVHDLDG 57 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee-------------------------cccceeccCchhhhhcccchhcC
Confidence 49999999999999999999999999988772 279999999999999999 7999
Q ss_pred ceecceeeEEecCCCCcccc----CCC----C---CCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEee
Q 015974 306 AVIGGNHIRLDRACPPRKKL----KGE----D---APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIR 374 (397)
Q Consensus 306 ~~l~Gr~I~V~~a~~~~k~~----~~~----~---~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~r 374 (397)
..|.|-.+.|.++....... .+. . .+..-..+.|+|.+++..+.+.+|.++|+.+ |.+.++.+
T Consensus 58 ~~l~~e~~vve~~r~~~~~~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~----g~~~~~~~-- 131 (216)
T KOG0106|consen 58 KELCGERLVVEHARGKRRGRGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPA----GEVTYVDA-- 131 (216)
T ss_pred ceecceeeeeecccccccccCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhccc----CCCchhhh--
Confidence 99999888888886421111 000 0 1112235788999999999999999999999 88865544
Q ss_pred CCCCCCCccEEEEEecccccc
Q 015974 375 HPHMRVGKGIAYVLFKTRDNW 395 (397)
Q Consensus 375 d~~tg~~kGfAFV~F~s~e~A 395 (397)
..+++||.|.+.++|
T Consensus 132 ------~~~~~~v~Fs~~~da 146 (216)
T KOG0106|consen 132 ------RRNFAFVEFSEQEDA 146 (216)
T ss_pred ------hccccceeehhhhhh
Confidence 456999999998776
No 58
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.16 E-value=7.6e-11 Score=124.17 Aligned_cols=148 Identities=24% Similarity=0.389 Sum_probs=111.5
Q ss_pred CCCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcc-eEEEEecCHHHHHH
Q 015974 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV-HAYIVFKSEQSTEA 299 (397)
Q Consensus 221 ~~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG-~AFV~F~s~e~A~~ 299 (397)
..+..+.|+|+|||..+..++|..+|..||.|..|.|+ + . | .|+|+|.++.+|+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp--~---~-------------------G~~aiv~fl~p~eAr~ 436 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP--P---G-------------------GTGAIVEFLNPLEARK 436 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC--c---c-------------------cceeeeeecCccchHH
Confidence 45667889999999999999999999999999988552 1 1 2 49999999999999
Q ss_pred HH-HhcCceecceeeEEecCCC------Cc-ccc----------------CCCCC------------Cc------ccccc
Q 015974 300 AL-AFNMAVIGGNHIRLDRACP------PR-KKL----------------KGEDA------------PL------YDIKK 337 (397)
Q Consensus 300 Al-~lng~~l~Gr~I~V~~a~~------~~-k~~----------------~~~~~------------~~------~~~~~ 337 (397)
|+ .|..+.+...++.+.|+.. +. ... ...+. +. ....+
T Consensus 437 Afrklaysr~k~~plyle~aP~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t 516 (725)
T KOG0110|consen 437 AFRKLAYSRFKSAPLYLEWAPEDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETET 516 (725)
T ss_pred HHHHhchhhhccCccccccChhhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccch
Confidence 99 5888888777777766521 00 000 00000 00 01123
Q ss_pred ceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCC---CCCccEEEEEeccccccc
Q 015974 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM---RVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 338 tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~t---g~~kGfAFV~F~s~e~A~ 396 (397)
+|||.||++.+|.++|..+|... |.|.+|.|...++. -.+.|||||+|.+.++|+
T Consensus 517 ~lfvkNlnf~Tt~e~l~~~F~k~----G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~ 574 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLEDLFSKQ----GTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQ 574 (725)
T ss_pred hhhhhcCCcccchhHHHHHHHhc----CeEEEEEEeccccccccccccceeEEEecCHHHHH
Confidence 49999999999999999999998 99999998877542 135599999999999875
No 59
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.15 E-value=1.3e-10 Score=96.41 Aligned_cols=77 Identities=19% Similarity=0.344 Sum_probs=68.8
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.+.|||+|||+++|.+++.++|.+||.|..|||-. +...+|.|||+|.+..+|..|+ .|
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~--------------------~k~TrGTAFVVYedi~dAk~A~dhl 77 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGN--------------------TKETRGTAFVVYEDIFDAKKACDHL 77 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecC--------------------ccCcCceEEEEehHhhhHHHHHHHh
Confidence 57899999999999999999999999999999822 2234699999999999999999 69
Q ss_pred cCceecceeeEEecCCCC
Q 015974 304 NMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (397)
+|..+.++.+.|....+.
T Consensus 78 sg~n~~~ryl~vlyyq~~ 95 (124)
T KOG0114|consen 78 SGYNVDNRYLVVLYYQPE 95 (124)
T ss_pred cccccCCceEEEEecCHH
Confidence 999999999999998754
No 60
>smart00360 RRM RNA recognition motif.
Probab=99.15 E-value=1.6e-10 Score=85.92 Aligned_cols=70 Identities=36% Similarity=0.572 Sum_probs=60.7
Q ss_pred EecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-HhcCcee
Q 015974 230 VGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVI 308 (397)
Q Consensus 230 VgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~l 308 (397)
|+|||..++.++|+.+|..||.|..+.+...+ .++.++|||||.|.+.++|..|+ .+++..+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~-----------------~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~ 63 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDK-----------------DTGKSKGFAFVEFESEEDAEKALEALNGKEL 63 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCC-----------------CCCCCCceEEEEeCCHHHHHHHHHHcCCCee
Confidence 68999999999999999999999999886543 13456799999999999999999 6899999
Q ss_pred cceeeEEe
Q 015974 309 GGNHIRLD 316 (397)
Q Consensus 309 ~Gr~I~V~ 316 (397)
.|+.|.|.
T Consensus 64 ~~~~~~v~ 71 (71)
T smart00360 64 DGRPLKVK 71 (71)
T ss_pred CCcEEEeC
Confidence 99998873
No 61
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.15 E-value=1.6e-10 Score=118.95 Aligned_cols=76 Identities=24% Similarity=0.451 Sum_probs=68.4
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hhc
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (397)
+.||||||.+.+|++.|+..|..||.|..|.++.+. .+|.++||+||+|.+.++|..|+ .||
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~-----------------~tG~skgfGfi~f~~~~~ar~a~e~ln 341 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS-----------------ETGRSKGFGFITFVNKEDARKALEQLN 341 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeecccc-----------------ccccccCcceEEEecHHHHHHHHHHhc
Confidence 339999999999999999999999999999886543 46778899999999999999998 799
Q ss_pred CceecceeeEEecC
Q 015974 305 MAVIGGNHIRLDRA 318 (397)
Q Consensus 305 g~~l~Gr~I~V~~a 318 (397)
|..|-|+.|+|...
T Consensus 342 gfelAGr~ikV~~v 355 (549)
T KOG0147|consen 342 GFELAGRLIKVSVV 355 (549)
T ss_pred cceecCceEEEEEe
Confidence 99999999998775
No 62
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.11 E-value=9.2e-11 Score=107.94 Aligned_cols=78 Identities=26% Similarity=0.416 Sum_probs=71.5
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
-.+|-|-||.+.+|.++|+.+|.+||.|.+|.|++++ .++.++|||||.|....+|+.|| +|
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr-----------------~Tr~sRgFaFVrf~~k~daedA~dam 75 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDR-----------------YTRQSRGFAFVRFHDKRDAEDALDAM 75 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceeccccc-----------------ccccccceeEEEeeecchHHHHHHhh
Confidence 4679999999999999999999999999999998776 35567799999999999999999 69
Q ss_pred cCceecceeeEEecCC
Q 015974 304 NMAVIGGNHIRLDRAC 319 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~ 319 (397)
+|.+|+|+.|.|+.|.
T Consensus 76 DG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 76 DGAVLDGRELRVQMAR 91 (256)
T ss_pred cceeeccceeeehhhh
Confidence 9999999999999885
No 63
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.11 E-value=5.9e-10 Score=83.68 Aligned_cols=73 Identities=38% Similarity=0.606 Sum_probs=63.6
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-HhcC
Q 015974 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (397)
Q Consensus 227 tVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng 305 (397)
+|||+|||+.+++++|+.+|..||.|..+.+...+. +..+|+|||.|.+.++|..|+ .+++
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~------------------~~~~~~~~v~f~s~~~a~~a~~~~~~ 62 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD------------------TKSKGFAFVEFEDEEDAEKALEALNG 62 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC------------------CCcceEEEEEECCHHHHHHHHHHhCC
Confidence 489999999999999999999999999998865431 124689999999999999999 6999
Q ss_pred ceecceeeEEec
Q 015974 306 AVIGGNHIRLDR 317 (397)
Q Consensus 306 ~~l~Gr~I~V~~ 317 (397)
..+.|+.|.|.+
T Consensus 63 ~~~~~~~~~v~~ 74 (74)
T cd00590 63 KELGGRPLRVEF 74 (74)
T ss_pred CeECCeEEEEeC
Confidence 999999998863
No 64
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.10 E-value=1.2e-10 Score=103.32 Aligned_cols=59 Identities=19% Similarity=0.380 Sum_probs=55.5
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+++|||+|||+.+++++|+++|.+| |.|..|.|+.|..++.++|||||+|.+.++|+
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~ 90 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHF----GDVVDAKVIVDRETGRSRGFGFVNFNDEGAAT 90 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC----CCeEEEEEEecCCCCCcceEEEEEECCHHHHH
Confidence 346799999999999999999999999 99999999999999999999999999998875
No 65
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.08 E-value=1.2e-09 Score=107.07 Aligned_cols=156 Identities=22% Similarity=0.302 Sum_probs=111.0
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhcc-ccCCCcceEEEEecCHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQI-NENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~-~~g~skG~AFV~F~s~e~A~~A 300 (397)
..-...|||.|||.++|.+++.++|++||.|. +++ .++.|+ |+-+. +.|.-+|-|+++|...+++..|
T Consensus 131 ~~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~-----~d~--~t~epk----~KlYrd~~G~lKGDaLc~y~K~ESVeLA 199 (382)
T KOG1548|consen 131 PKVNTSVYVSGLPLDITVDEFAEVMSKCGIIM-----RDP--QTGEPK----VKLYRDNQGKLKGDALCCYIKRESVELA 199 (382)
T ss_pred cccCceEEecCCCCcccHHHHHHHHHhcceEe-----ccC--CCCCee----EEEEecCCCCccCceEEEeecccHHHHH
Confidence 34456699999999999999999999999653 222 466665 22222 3577799999999999999999
Q ss_pred HH-hcCceecceeeEEecCCCCcc-------ccC--------------------C--CCCCccccccceecCCCC----c
Q 015974 301 LA-FNMAVIGGNHIRLDRACPPRK-------KLK--------------------G--EDAPLYDIKKTVFVGNLP----F 346 (397)
Q Consensus 301 l~-lng~~l~Gr~I~V~~a~~~~k-------~~~--------------------~--~~~~~~~~~~tLfVgNLp----~ 346 (397)
+. |++..|.|+.|+|..|.-..+ ... . .........++|.|.||= +
T Consensus 200 ~~ilDe~~~rg~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~ 279 (382)
T KOG1548|consen 200 IKILDEDELRGKKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDF 279 (382)
T ss_pred HHHhCcccccCcEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHh
Confidence 94 999999999999999842110 000 0 001112335788888872 2
Q ss_pred cCc-------HHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 347 DVK-------DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 347 ~vt-------eedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+ .++|.+-...| |.|..|.|. +. .+.|.+-|.|.+.++|.
T Consensus 280 ~~~~~l~~dlkedl~eec~K~----G~v~~vvv~-d~---hPdGvvtV~f~n~eeA~ 328 (382)
T KOG1548|consen 280 EKNPDLLNDLKEDLTEECEKF----GQVRKVVVY-DR---HPDGVVTVSFRNNEEAD 328 (382)
T ss_pred ccCHHHHHHHHHHHHHHHHHh----CCcceEEEe-cc---CCCceeEEEeCChHHHH
Confidence 223 45566667888 999998664 32 36789999999998874
No 66
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=7.8e-11 Score=109.27 Aligned_cols=82 Identities=28% Similarity=0.475 Sum_probs=74.2
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..||||||+|...+|+.-|...|-.||.|..|.++.+ +.+.++||||||+|...++|.+|| .
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlD-----------------yesqkHRgFgFVefe~aEDAaaAiDN 71 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLD-----------------YESQKHRGFGFVEFEEAEDAAAAIDN 71 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccc-----------------hhcccccceeEEEeeccchhHHHhhc
Confidence 4689999999999999999999999999999988554 355678899999999999999999 6
Q ss_pred hcCceecceeeEEecCCCCc
Q 015974 303 FNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (397)
||+..|.||.|+|.++.|.+
T Consensus 72 MnesEL~GrtirVN~AkP~k 91 (298)
T KOG0111|consen 72 MNESELFGRTIRVNLAKPEK 91 (298)
T ss_pred CchhhhcceeEEEeecCCcc
Confidence 99999999999999998753
No 67
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.06 E-value=2.2e-10 Score=99.13 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=70.9
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
...|||.++...+|+++|...|..||+|.+|.|-.+. .+|..+|||+|+|.+...|++|+ .+
T Consensus 72 GwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDR-----------------RtGy~KGYaLvEYet~keAq~A~~~~ 134 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDR-----------------RTGYVKGYALVEYETLKEAQAAIDAL 134 (170)
T ss_pred eEEEEEeccCcchhHHHHHHHHhhcccccceeecccc-----------------ccccccceeeeehHhHHHHHHHHHhc
Confidence 5779999999999999999999999999999884432 46677899999999999999999 79
Q ss_pred cCceecceeeEEecCC
Q 015974 304 NMAVIGGNHIRLDRAC 319 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~ 319 (397)
||..|.|..|.|+|+.
T Consensus 135 Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 135 NGAELLGQNVSVDWCF 150 (170)
T ss_pred cchhhhCCceeEEEEE
Confidence 9999999999999985
No 68
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.01 E-value=2.7e-10 Score=106.74 Aligned_cols=57 Identities=21% Similarity=0.405 Sum_probs=54.6
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
-++||||||++.++.+.|+.+|++| |+|....|+.|..+|+++|||||+|.+.++|.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqf----GeI~eavvitd~~t~rskGyGfVTf~d~~aa~ 68 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQF----GEIVEAVVITDKNTGRSKGYGFVTFRDAEAAT 68 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHh----CceEEEEEEeccCCccccceeeEEeecHHHHH
Confidence 4689999999999999999999999 99999999999999999999999999999885
No 69
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.99 E-value=4.9e-09 Score=104.75 Aligned_cols=142 Identities=19% Similarity=0.288 Sum_probs=111.2
Q ss_pred cCEEEEecCCCC-CcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 225 LRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 225 ~rtVFVgNLp~~-~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
...|.|.||... +|.+.|..+|+-||.|..|.|+... +-.|+|.|.+...|+.|+ .
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk----------------------kd~ALIQmsd~~qAqLA~~h 354 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK----------------------KDNALIQMSDGQQAQLAMEH 354 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC----------------------CcceeeeecchhHHHHHHHH
Confidence 578999999765 8999999999999999999996532 136999999999999999 6
Q ss_pred hcCceecceeeEEecCCCCccccCC----C----------------------CCCccccccceecCCCCccCcHHHHHHH
Q 015974 303 FNMAVIGGNHIRLDRACPPRKKLKG----E----------------------DAPLYDIKKTVFVGNLPFDVKDEEIYQL 356 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~----~----------------------~~~~~~~~~tLfVgNLp~~vteedL~~~ 356 (397)
|+|..|.|+.|+|..+.+..-.... + -...++++.+|++.|+|.++++++|+.+
T Consensus 355 L~g~~l~gk~lrvt~SKH~~vqlp~egq~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~ 434 (492)
T KOG1190|consen 355 LEGHKLYGKKLRVTLSKHTNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNL 434 (492)
T ss_pred hhcceecCceEEEeeccCccccCCCCCCccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHh
Confidence 9999999999999998653211100 0 0112466789999999999999999999
Q ss_pred hccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 357 FCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 357 F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
|...| |.|....+. +..+-+|++++.+.+.|.
T Consensus 435 f~~~g---~~vkafkff-----~kd~kmal~q~~sveeA~ 466 (492)
T KOG1190|consen 435 FQEPG---GQVKAFKFF-----QKDRKMALPQLESVEEAI 466 (492)
T ss_pred hhcCC---ceEEeeeec-----CCCcceeecccCChhHhh
Confidence 98873 444544332 234569999999998885
No 70
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.95 E-value=1.2e-09 Score=112.35 Aligned_cols=78 Identities=24% Similarity=0.416 Sum_probs=71.4
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hhc
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (397)
+.|||||+|+++++++|..+|+..|.|.++++..|+ .+|+.+||||++|.+.+.+..|+ .||
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~-----------------~tG~~~G~~f~~~~~~~~~~~a~~~lN 81 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDR-----------------ETGKPKGFGFCEFTDEETAERAIRNLN 81 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccc-----------------cCCCcCceeeEecCchhhHHHHHHhcC
Confidence 889999999999999999999999999999997765 34556799999999999999999 599
Q ss_pred CceecceeeEEecCCC
Q 015974 305 MAVIGGNHIRLDRACP 320 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (397)
|..+.||+|+|.++..
T Consensus 82 g~~~~gr~l~v~~~~~ 97 (435)
T KOG0108|consen 82 GAEFNGRKLRVNYASN 97 (435)
T ss_pred CcccCCceEEeecccc
Confidence 9999999999999853
No 71
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.95 E-value=7.8e-10 Score=83.81 Aligned_cols=53 Identities=34% Similarity=0.670 Sum_probs=49.8
Q ss_pred eecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 339 LfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
|||+|||..+++++|+++|+.| |.|..+.+..+ .++..+|||||.|.+.++|.
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~----g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~ 53 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQF----GKIESIKVMRN-SSGKSKGYAFVEFESEEDAE 53 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTT----STEEEEEEEEE-TTSSEEEEEEEEESSHHHHH
T ss_pred cEEcCCCCcCCHHHHHHHHHHh----hhccccccccc-ccccccceEEEEEcCHHHHH
Confidence 7999999999999999999999 99999999998 56899999999999998874
No 72
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.90 E-value=2.1e-09 Score=106.63 Aligned_cols=150 Identities=18% Similarity=0.262 Sum_probs=109.8
Q ss_pred cCEEEEecCCCCCcHHHHHHHhccc----CCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKF----GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~----G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
.-.|-+++||+++|+.++..||..- |..+.|.+++.+ +|+-.|-|||.|..++.|+.|
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp------------------dgrpTGdAFvlfa~ee~aq~a 222 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP------------------DGRPTGDAFVLFACEEDAQFA 222 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC------------------CCCcccceEEEecCHHHHHHH
Confidence 4568889999999999999999732 234556665433 344569999999999999999
Q ss_pred HHhcCceecceeeEEecCCCCcc----------ccCC------------CCCCccccccceecCCCCccCcHHHHHHHhc
Q 015974 301 LAFNMAVIGGNHIRLDRACPPRK----------KLKG------------EDAPLYDIKKTVFVGNLPFDVKDEEIYQLFC 358 (397)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~~~k----------~~~~------------~~~~~~~~~~tLfVgNLp~~vteedL~~~F~ 358 (397)
|..|...++-|.|.+-++....- ..-. ...+......+|.+++||+..+.++|..||.
T Consensus 223 L~khrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~Flg 302 (508)
T KOG1365|consen 223 LRKHRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLG 302 (508)
T ss_pred HHHHHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHH
Confidence 98888888878887665531100 0000 0011122367899999999999999999999
Q ss_pred cCCCCCCCeEE--EEEeeCCCCCCCccEEEEEeccccccc
Q 015974 359 GLNDLESSVEA--VRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 359 ~f~~~~G~I~~--Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.|. -.|.. |.++.+. .|++.|-|||+|.+.++|.
T Consensus 303 dFa---~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~ 338 (508)
T KOG1365|consen 303 DFA---TDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERAR 338 (508)
T ss_pred HHh---hhcccceeEEEEcC-CCCcChhhhhhhhhhHHHH
Confidence 883 34555 7777774 4999999999999988763
No 73
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=98.88 E-value=2.1e-09 Score=82.43 Aligned_cols=53 Identities=28% Similarity=0.595 Sum_probs=48.3
Q ss_pred eecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 339 LfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
|||+|||+.+++++|+++|+.| |.|..|++..+.. +.++|+|||+|.+.++|.
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~----g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~ 53 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRF----GPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAK 53 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTS----SBEEEEEEEESTT-SSEEEEEEEEESSHHHHH
T ss_pred CEEeCCCCCCCHHHHHHHHHhc----CCcceEEEEeeec-cccCCEEEEEeCCHHHHH
Confidence 7999999999999999999999 8999999999977 999999999999998875
No 74
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.83 E-value=1.4e-08 Score=74.96 Aligned_cols=55 Identities=27% Similarity=0.458 Sum_probs=47.2
Q ss_pred HHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-HhcCceecceeeEEecC
Q 015974 242 LIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRA 318 (397)
Q Consensus 242 L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~l~Gr~I~V~~a 318 (397)
|+.+|++||.|..|.+... .+|+|||+|.+.++|..|+ .|||..+.|++|.|.+|
T Consensus 1 L~~~f~~fG~V~~i~~~~~----------------------~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKK----------------------KRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETT----------------------STTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeC----------------------CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 6889999999999988321 1379999999999999999 59999999999999875
No 75
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.81 E-value=2.5e-09 Score=104.92 Aligned_cols=151 Identities=21% Similarity=0.200 Sum_probs=113.5
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHh
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (397)
...++|+|++.+.+.+.++..+|..+|.+....+... .+...++|+++|.|...+.+..||++
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~-----------------~~~~~sk~~~s~~f~~ks~~~~~l~~ 149 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSL-----------------EDSLSSKGGLSVHFAGKSQFFAALEE 149 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhh-----------------ccccccccceeeccccHHHHHHHHHh
Confidence 4788999999999999988899999997665544221 13446789999999999999999988
Q ss_pred cCc-eecceeeEEecCCCCcccc-CCCCCCcccccccee-cCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCC
Q 015974 304 NMA-VIGGNHIRLDRACPPRKKL-KGEDAPLYDIKKTVF-VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (397)
Q Consensus 304 ng~-~l~Gr~I~V~~a~~~~k~~-~~~~~~~~~~~~tLf-VgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~ 380 (397)
.+. .+.++.+............ ............++| |++|+++++.++|+.+|..+ |.|..|+++.++.++.
T Consensus 150 s~~~~~~~~~~~~dl~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~----~~i~~~r~~~~~~s~~ 225 (285)
T KOG4210|consen 150 SGSKVLDGNKGEKDLNTRRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSS----GEITSVRLPTDEESGD 225 (285)
T ss_pred hhccccccccccCcccccccccccchhcccccCccccceeecccccccchHHHhhhccCc----CcceeeccCCCCCccc
Confidence 876 5555555555443221000 000011122334555 99999999999999999999 9999999999999999
Q ss_pred CccEEEEEecccccc
Q 015974 381 GKGIAYVLFKTRDNW 395 (397)
Q Consensus 381 ~kGfAFV~F~s~e~A 395 (397)
++|||||.|.....+
T Consensus 226 ~kg~a~~~~~~~~~~ 240 (285)
T KOG4210|consen 226 SKGFAYVDFSAGNSK 240 (285)
T ss_pred hhhhhhhhhhhchhH
Confidence 999999999876543
No 76
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=98.80 E-value=5.5e-09 Score=98.46 Aligned_cols=60 Identities=30% Similarity=0.478 Sum_probs=56.6
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+...+|.|.||+.++++++|.++|.+| |.|..|.|.+|..||.++|||||+|.++++|+
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~f----g~i~rvylardK~TG~~kGFAFVtF~sRddA~ 245 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPF----GPITRVYLARDKETGLSKGFAFVTFESRDDAA 245 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhcc----CccceeEEEEccccCcccceEEEEEecHHHHH
Confidence 4456899999999999999999999999 99999999999999999999999999999885
No 77
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.78 E-value=4.5e-08 Score=99.98 Aligned_cols=149 Identities=21% Similarity=0.297 Sum_probs=108.8
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeE-EEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS-VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~-Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
....|-+++||+.+|+++|.+||+..-.|.. |.++.+ ..+++.|-|||+|.+.+.|+.||.
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d------------------~rgR~tGEAfVqF~sqe~ae~Al~ 163 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD------------------QRGRPTGEAFVQFESQESAEIALG 163 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc------------------CCCCcccceEEEecCHHHHHHHHH
Confidence 3578999999999999999999998765544 333222 123467999999999999999998
Q ss_pred hcCceecceeeEEecCCCC-------------------cc--ccCC---------------------------------C
Q 015974 303 FNMAVIGGNHIRLDRACPP-------------------RK--KLKG---------------------------------E 328 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~-------------------~k--~~~~---------------------------------~ 328 (397)
.|...+..|.|.|..+... .. ..+. .
T Consensus 164 rhre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~ 243 (510)
T KOG4211|consen 164 RHRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQ 243 (510)
T ss_pred HHHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccc
Confidence 8888888888887665210 00 0000 0
Q ss_pred C---------------C----C-----------ccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCC
Q 015974 329 D---------------A----P-----------LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (397)
Q Consensus 329 ~---------------~----~-----------~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~t 378 (397)
+ . + .......+++++||+..+..++.++|+.. ....|.|...++
T Consensus 244 d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl-----~p~~v~i~ig~d- 317 (510)
T KOG4211|consen 244 DYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPL-----NPYRVHIEIGPD- 317 (510)
T ss_pred ccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCC-----CceeEEEEeCCC-
Confidence 0 0 0 00112578899999999999999999986 445677766754
Q ss_pred CCCccEEEEEeccccccc
Q 015974 379 RVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 379 g~~kGfAFV~F~s~e~A~ 396 (397)
|+..|-|+|.|.+.++|.
T Consensus 318 Gr~TGEAdveF~t~edav 335 (510)
T KOG4211|consen 318 GRATGEADVEFATGEDAV 335 (510)
T ss_pred CccCCcceeecccchhhH
Confidence 999999999999999885
No 78
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=98.76 E-value=6.4e-09 Score=89.43 Aligned_cols=58 Identities=28% Similarity=0.449 Sum_probs=54.5
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+++||||||++.+++++|+++|+.| |.|..|.|--|..+..+-|||||.|.+.++|.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~c----G~irriiMGLdr~kktpCGFCFVeyy~~~dA~ 92 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKC----GDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAE 92 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhc----cchheeEeccccCCcCccceEEEEEecchhHH
Confidence 36899999999999999999999999 99999999999999999999999999998885
No 79
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=98.75 E-value=7.7e-10 Score=118.60 Aligned_cols=128 Identities=29% Similarity=0.338 Sum_probs=109.7
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
-++..++||+||++.+.+.+|...|..+|.|..+++. . . .+.++-+|+||+.|..++++.+|+
T Consensus 664 ~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~-~-h---------------~n~~~~rG~~Y~~F~~~~~~~aaV 726 (881)
T KOG0128|consen 664 IRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIV-I-H---------------KNEKRFRGKAYVEFLKPEHAGAAV 726 (881)
T ss_pred HHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHH-H-H---------------hhccccccceeeEeecCCchhhhh
Confidence 4567889999999999999999999999988877764 1 1 133445699999999999999999
Q ss_pred HhcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~ 381 (397)
.++...+.| ...|+|.|+|+..|.+.|+.+|..+ |.+..++++.... |.+
T Consensus 727 ~f~d~~~~g-------------------------K~~v~i~g~pf~gt~e~~k~l~~~~----gn~~~~~~vt~r~-gkp 776 (881)
T KOG0128|consen 727 AFRDSCFFG-------------------------KISVAISGPPFQGTKEELKSLASKT----GNVTSLRLVTVRA-GKP 776 (881)
T ss_pred hhhhhhhhh-------------------------hhhhheeCCCCCCchHHHHhhcccc----CCccccchhhhhc-ccc
Confidence 877666666 1579999999999999999999999 9999999888865 999
Q ss_pred ccEEEEEeccccccc
Q 015974 382 KGIAYVLFKTRDNWI 396 (397)
Q Consensus 382 kGfAFV~F~s~e~A~ 396 (397)
+|.|||.|.+..+|.
T Consensus 777 kg~a~v~y~~ea~~s 791 (881)
T KOG0128|consen 777 KGKARVDYNTEADAS 791 (881)
T ss_pred ccceeccCCCcchhh
Confidence 999999999987764
No 80
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=2e-09 Score=99.97 Aligned_cols=124 Identities=23% Similarity=0.307 Sum_probs=101.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH-h
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~-l 303 (397)
.+||||+||...++++-|.++|-+.|+|..|.|+.+.. +.-+ ||||.|.++.++..|+. +
T Consensus 9 drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d------------------~~~k-Fa~v~f~~E~sv~~a~~L~ 69 (267)
T KOG4454|consen 9 DRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQD------------------QEQK-FAYVFFPNENSVQLAGQLE 69 (267)
T ss_pred hhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCcc------------------CCCc-eeeeecccccchhhhhhhc
Confidence 58899999999999999999999999999988855431 1122 99999999999999995 8
Q ss_pred cCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCcc
Q 015974 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kG 383 (397)
||..+.++.|.|..-+-.. . . -|...++.+.++..|+.- |.|..+|+.++.+ |+++.
T Consensus 70 ng~~l~~~e~q~~~r~G~s----------h---a-----pld~r~~~ei~~~v~s~a----~p~~~~R~~~~~d-~rnrn 126 (267)
T KOG4454|consen 70 NGDDLEEDEEQRTLRCGNS----------H---A-----PLDERVTEEILYEVFSQA----GPIEGVRIPTDND-GRNRN 126 (267)
T ss_pred ccchhccchhhcccccCCC----------c---c-----hhhhhcchhhheeeeccc----CCCCCcccccccc-CCccC
Confidence 9999999988776643110 0 0 145568999999999987 8999999999976 89999
Q ss_pred EEEEEec
Q 015974 384 IAYVLFK 390 (397)
Q Consensus 384 fAFV~F~ 390 (397)
++||++-
T Consensus 127 ~~~~~~q 133 (267)
T KOG4454|consen 127 FGFVTYQ 133 (267)
T ss_pred ccchhhh
Confidence 9999864
No 81
>smart00361 RRM_1 RNA recognition motif.
Probab=98.75 E-value=3.7e-08 Score=76.37 Aligned_cols=62 Identities=23% Similarity=0.412 Sum_probs=50.1
Q ss_pred HHHHHHHhc----ccCCeeEEE-EeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-HhcCceeccee
Q 015974 239 KKTLIKEFI----KFGEIDSVR-IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNH 312 (397)
Q Consensus 239 ee~L~~~Fs----~~G~I~~Ir-i~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~l~Gr~ 312 (397)
+++|+++|+ .||.|.+|. ++.++. + ..+.++|||||.|.+.++|..|+ .|||..+.|+.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~--~-------------~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~ 66 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNV--G-------------YENHKRGNVYITFERSEDAARAIVDLNGRYFDGRT 66 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCC--C-------------CCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 568889998 999999985 543321 1 01456799999999999999999 69999999999
Q ss_pred eEE
Q 015974 313 IRL 315 (397)
Q Consensus 313 I~V 315 (397)
|.+
T Consensus 67 l~~ 69 (70)
T smart00361 67 VKA 69 (70)
T ss_pred EEe
Confidence 986
No 82
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.71 E-value=4.4e-09 Score=95.30 Aligned_cols=58 Identities=19% Similarity=0.552 Sum_probs=53.2
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDN 394 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~ 394 (397)
+-.+.-|||||||+.+|+.||.-+|++| |.|..|.|+||..||.++||||+.|.+.-+
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqy----Ge~vdinLiRDk~TGKSKGFaFLcYEDQRS 89 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQY----GEIVDINLIRDKKTGKSKGFAFLCYEDQRS 89 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeecc----CceEEEEEEecCCCCcccceEEEEecCccc
Confidence 3446789999999999999999999999 999999999999999999999999987543
No 83
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=2.4e-08 Score=98.29 Aligned_cols=82 Identities=22% Similarity=0.269 Sum_probs=73.9
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
..+.+.|||..|.+-+|.++|.-+|+.||.|.+|.++++. .+|-+..||||+|.+.+++++|.
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~-----------------ktgdsLqyaFiEFen~escE~Ay 298 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDR-----------------KTGDSLQYAFIEFENKESCEQAY 298 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecc-----------------cccchhheeeeeecchhhHHHHH
Confidence 3456889999999999999999999999999999998764 45667789999999999999998
Q ss_pred -HhcCceecceeeEEecCCC
Q 015974 302 -AFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~ 320 (397)
.|+...++.+.|.|.+++.
T Consensus 299 FKMdNvLIDDrRIHVDFSQS 318 (479)
T KOG0415|consen 299 FKMDNVLIDDRRIHVDFSQS 318 (479)
T ss_pred hhhcceeeccceEEeehhhh
Confidence 8999999999999999864
No 84
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.70 E-value=4.5e-08 Score=96.32 Aligned_cols=77 Identities=27% Similarity=0.542 Sum_probs=67.8
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
+....|||||||-..+++.+|+.+|.+||.|.+|++.. .+|+|||.|.+..+|+.|.
T Consensus 225 D~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~-----------------------~~~CAFv~ftTR~aAE~Aa 281 (377)
T KOG0153|consen 225 DTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILP-----------------------RKGCAFVTFTTREAAEKAA 281 (377)
T ss_pred ccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeec-----------------------ccccceeeehhhHHHHHHH
Confidence 34578999999999999999999999999999998843 2379999999999999988
Q ss_pred --HhcCceecceeeEEecCCCC
Q 015974 302 --AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 --~lng~~l~Gr~I~V~~a~~~ 321 (397)
.+|...+.|++|.|.|+.+.
T Consensus 282 e~~~n~lvI~G~Rl~i~Wg~~~ 303 (377)
T KOG0153|consen 282 EKSFNKLVINGFRLKIKWGRPK 303 (377)
T ss_pred HhhcceeeecceEEEEEeCCCc
Confidence 38888899999999998873
No 85
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=98.67 E-value=3.1e-08 Score=105.47 Aligned_cols=77 Identities=27% Similarity=0.414 Sum_probs=69.7
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
.-.++|||||+|+..+++.+|..+|..||.|.+|.++. ++|||||++.+..+|..||
T Consensus 418 sV~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~-----------------------~R~cAfI~M~~RqdA~kal 474 (894)
T KOG0132|consen 418 SVCSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP-----------------------PRGCAFIKMVRRQDAEKAL 474 (894)
T ss_pred eEeeeeeeeccccchhhHHHHHHHHHhcccceeEeecc-----------------------CCceeEEEEeehhHHHHHH
Confidence 44689999999999999999999999999999998722 4589999999999999999
Q ss_pred -HhcCceecceeeEEecCCCC
Q 015974 302 -AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~ 321 (397)
+|+...+.++.|+|.|+...
T Consensus 475 qkl~n~kv~~k~Iki~Wa~g~ 495 (894)
T KOG0132|consen 475 QKLSNVKVADKTIKIAWAVGK 495 (894)
T ss_pred HHHhcccccceeeEEeeeccC
Confidence 79999999999999999743
No 86
>smart00362 RRM_2 RNA recognition motif.
Probab=98.61 E-value=6.6e-08 Score=71.97 Aligned_cols=53 Identities=36% Similarity=0.681 Sum_probs=48.9
Q ss_pred ceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 338 tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+|||+|||..++.++|+++|..| |.|..+.+..+. +.++|+|||+|.+.++|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~----g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~ 53 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKF----GPIESVKIPKDT--GKSKGFAFVEFESEEDAE 53 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhc----CCEEEEEEecCC--CCCCceEEEEeCCHHHHH
Confidence 58999999999999999999999 999999999886 778999999999988774
No 87
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=5.7e-08 Score=93.92 Aligned_cols=58 Identities=22% Similarity=0.440 Sum_probs=54.3
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDN 394 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~ 394 (397)
.++-+||||+-|++++++..|+..|+.| |.|..|+|++|..||.++|||||+|.+.-+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~Y----G~IkrirlV~d~vTgkskGYAFIeye~erd 155 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKY----GPIKRIRLVRDKVTGKSKGYAFIEYEHERD 155 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhc----CcceeEEEeeecccCCccceEEEEeccHHH
Confidence 4678999999999999999999999999 999999999999999999999999987543
No 88
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=98.59 E-value=5.3e-08 Score=90.15 Aligned_cols=57 Identities=35% Similarity=0.688 Sum_probs=54.1
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+|||+|||+.+++++|+++|..| |.|..|.|+.+..++.++|||||.|.+.++|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~----g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~ 171 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKF----GPVKRVRLVRDRETGKSRGFAFVEFESEESAE 171 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhc----CceeEEEeeeccccCccCceEEEEecCHHHHH
Confidence 5899999999999999999999999 99999999999889999999999999988764
No 89
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.59 E-value=1.2e-07 Score=98.48 Aligned_cols=149 Identities=19% Similarity=0.265 Sum_probs=110.7
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..+.+||+|||...++.++.++...||.+...++..+. .+|-++||||.+|.++.-...|+ .
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~-----------------~~g~skg~af~ey~dpsvtd~A~ag 350 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDS-----------------ATGNSKGFAFCEYCDPSVTDQAIAG 350 (500)
T ss_pred ccchhhhccCcCccCHHHHHHHHHhcccchhheeeccc-----------------ccccccceeeeeeeCCcchhhhhcc
Confidence 35679999999999999999999999999888875543 34567899999999999999999 5
Q ss_pred hcCceecceeeEEecCCCCccccCCCCC---------------CccccccceecCCCCccCcH-------------HHHH
Q 015974 303 FNMAVIGGNHIRLDRACPPRKKLKGEDA---------------PLYDIKKTVFVGNLPFDVKD-------------EEIY 354 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~~---------------~~~~~~~tLfVgNLp~~vte-------------edL~ 354 (397)
|||..+.+..|.|+.+............ ....++..|.+.|+ ++. ++|+
T Consensus 351 LnGm~lgd~~lvvq~A~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~---Vt~deLkdd~EyeeIlEdvr 427 (500)
T KOG0120|consen 351 LNGMQLGDKKLVVQRAIVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNV---VTPDELKDDEEYEEILEDVR 427 (500)
T ss_pred cchhhhcCceeEeehhhccchhccccCCccccccccchhhhcccCCCcchhhhhhhc---CCHHHhcchHHHHHHHHHHH
Confidence 9999999999999998754332222111 11223455555554 232 2334
Q ss_pred HHhccCCCCCCCeEEEEEeeC-C--CCCCCccEEEEEeccccccc
Q 015974 355 QLFCGLNDLESSVEAVRVIRH-P--HMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 355 ~~F~~f~~~~G~I~~Vri~rd-~--~tg~~kGfAFV~F~s~e~A~ 396 (397)
.-++.| |.|..|.|+++ . +..-+-|-.||+|.+.++|+
T Consensus 428 ~ec~k~----g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~q 468 (500)
T KOG0120|consen 428 TECAKF----GAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQ 468 (500)
T ss_pred HHhccc----CceeEEecCCCCCCCCcCCCcccEEEEecChHHHH
Confidence 444666 99999999988 2 33456788999999998875
No 90
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.56 E-value=4.5e-07 Score=90.29 Aligned_cols=154 Identities=18% Similarity=0.219 Sum_probs=109.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhc
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (397)
...|-.++|||..++.+|..+|...-...-.+.+... ..|+..|.|.|.|.+++.-+.|++.+
T Consensus 60 ~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~-----------------~qgrRnge~lvrf~d~e~RdlalkRh 122 (508)
T KOG1365|consen 60 NVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLN-----------------AQGRRNGEALVRFVDPEGRDLALKRH 122 (508)
T ss_pred ceEEEecCCCCCcccCCHHHHHhhhhccccceeeeeh-----------------hhhccccceEEEecCchhhhhhhHhh
Confidence 4557788999999999999999854322111111110 11233489999999999999999988
Q ss_pred CceecceeeEEecCCCCcccc--CC--CCC---CccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCC
Q 015974 305 MAVIGGNHIRLDRACPPRKKL--KG--EDA---PLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH 377 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~--~~--~~~---~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~ 377 (397)
.+.+.+|.|.|-.+....--. .+ ... ......-.|.+++||+++++.++..||.+.-.+.|.++.|-+++.++
T Consensus 123 khh~g~ryievYka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd 202 (508)
T KOG1365|consen 123 KHHMGTRYIEVYKATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD 202 (508)
T ss_pred hhhccCCceeeeccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC
Confidence 889999999998875421100 00 001 11123457889999999999999999963222235677888888765
Q ss_pred CCCCccEEEEEeccccccc
Q 015974 378 MRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 378 tg~~kGfAFV~F~s~e~A~ 396 (397)
|+..|-|||.|...++|+
T Consensus 203 -grpTGdAFvlfa~ee~aq 220 (508)
T KOG1365|consen 203 -GRPTGDAFVLFACEEDAQ 220 (508)
T ss_pred -CCcccceEEEecCHHHHH
Confidence 999999999999998875
No 91
>smart00360 RRM RNA recognition motif.
Probab=98.56 E-value=1.1e-07 Score=70.35 Aligned_cols=52 Identities=38% Similarity=0.675 Sum_probs=48.3
Q ss_pred cCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 341 VGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 341 VgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
|+|||..++.++|+++|..| |.|..+.+..+..++.++|||||.|.+.++|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~----g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~ 52 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKF----GKIESVRLVRDKDTGKSKGFAFVEFESEEDAE 52 (71)
T ss_pred CCCCCcccCHHHHHHHHHhh----CCEeEEEEEeCCCCCCCCceEEEEeCCHHHHH
Confidence 68999999999999999999 99999999998878999999999999988774
No 92
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=98.54 E-value=6.9e-08 Score=94.40 Aligned_cols=58 Identities=26% Similarity=0.434 Sum_probs=52.2
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+..+.|+|.||||...+-||+.+|..| |.|.+|.|+.+. -.+||||||+|.+.++|.
T Consensus 93 ~~~pkRLhVSNIPFrFRdpDL~aMF~kf----G~VldVEIIfNE--RGSKGFGFVTmen~~dad 150 (376)
T KOG0125|consen 93 KDTPKRLHVSNIPFRFRDPDLRAMFEKF----GKVLDVEIIFNE--RGSKGFGFVTMENPADAD 150 (376)
T ss_pred CCCCceeEeecCCccccCccHHHHHHhh----CceeeEEEEecc--CCCCccceEEecChhhHH
Confidence 3445899999999999999999999999 999999999984 348999999999999885
No 93
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.52 E-value=1.9e-07 Score=92.57 Aligned_cols=83 Identities=23% Similarity=0.395 Sum_probs=73.2
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhc
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (397)
...||||+||.++++++|+.+|.+||.|..+.++.+. .+.+++||+||.|.+++++..++...
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~-----------------~~~~~rgFgfv~~~~e~sVdkv~~~~ 159 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDK-----------------TTSRPRGFGFVTFDSEDSVDKVTLQK 159 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecc-----------------cccccccceeeEeccccccceecccc
Confidence 5689999999999999999999999999888887764 23345699999999999999999999
Q ss_pred CceecceeeEEecCCCCccc
Q 015974 305 MAVIGGNHIRLDRACPPRKK 324 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~ 324 (397)
-+.|.|+.+.|..|.+....
T Consensus 160 f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred eeeecCceeeEeeccchhhc
Confidence 99999999999999876543
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.51 E-value=2.1e-07 Score=96.82 Aligned_cols=146 Identities=21% Similarity=0.411 Sum_probs=113.0
Q ss_pred CCCccCEEEEecCCCCCcHHHHHHHhccc-----------C-CeeEEEEeeecccCCCCCccchhhhhccccCCCcceEE
Q 015974 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKF-----------G-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAY 288 (397)
Q Consensus 221 ~~~~~rtVFVgNLp~~~Tee~L~~~Fs~~-----------G-~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AF 288 (397)
...+.+.+||+++|+.++++.+..+|..- | .|..+.+ ...+.|||
T Consensus 171 ~t~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~-----------------------n~~~nfa~ 227 (500)
T KOG0120|consen 171 ATRQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQL-----------------------NLEKNFAF 227 (500)
T ss_pred hhhhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeee-----------------------ccccccee
Confidence 34557889999999999999999999853 1 1233333 12357999
Q ss_pred EEecCHHHHHHHHHhcCceecceeeEEecCCCCccccCC----------C----CCCccccccceecCCCCccCcHHHHH
Q 015974 289 IVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKG----------E----DAPLYDIKKTVFVGNLPFDVKDEEIY 354 (397)
Q Consensus 289 V~F~s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~~~----------~----~~~~~~~~~tLfVgNLp~~vteedL~ 354 (397)
|+|.+.+.|..|+.+++..+.|+++.+-........... . ..........+||++||..+++.++.
T Consensus 228 ie~~s~~~at~~~~~~~~~f~g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~ 307 (500)
T KOG0120|consen 228 IEFRSISEATEAMALDGIIFEGRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVK 307 (500)
T ss_pred EEecCCCchhhhhcccchhhCCCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHH
Confidence 999999999999999999999998877554321110000 0 01123446789999999999999999
Q ss_pred HHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEecccc
Q 015974 355 QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRD 393 (397)
Q Consensus 355 ~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e 393 (397)
++...| |.+...+++.+..+|.++||||..|-+..
T Consensus 308 Ell~~f----g~lk~f~lv~d~~~g~skg~af~ey~dps 342 (500)
T KOG0120|consen 308 ELLDSF----GPLKAFRLVKDSATGNSKGFAFCEYCDPS 342 (500)
T ss_pred HHHHhc----ccchhheeecccccccccceeeeeeeCCc
Confidence 999999 88999999999999999999999998764
No 95
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=98.50 E-value=1.1e-07 Score=86.25 Aligned_cols=79 Identities=27% Similarity=0.389 Sum_probs=67.2
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEE-EEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSV-RIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~I-ri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
..|||+||.+.+++.-|+..|+.||.|... .+++++ .+|.++|||||.|.+.+.+.+|+ .+
T Consensus 97 anlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~-----------------~tg~~~~~g~i~~~sfeasd~ai~s~ 159 (203)
T KOG0131|consen 97 ANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDP-----------------DTGNPKGFGFINYASFEASDAAIGSM 159 (203)
T ss_pred ccccccccCcchhHHHHHHHHHhccccccCCcccccc-----------------cCCCCCCCeEEechhHHHHHHHHHHh
Confidence 569999999999999999999999987532 343433 34566799999999999999999 69
Q ss_pred cCceecceeeEEecCCCC
Q 015974 304 NMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (397)
||+.+..++|.|..+...
T Consensus 160 ngq~l~nr~itv~ya~k~ 177 (203)
T KOG0131|consen 160 NGQYLCNRPITVSYAFKK 177 (203)
T ss_pred ccchhcCCceEEEEEEec
Confidence 999999999999998643
No 96
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.49 E-value=3.2e-07 Score=84.78 Aligned_cols=79 Identities=16% Similarity=0.308 Sum_probs=66.9
Q ss_pred cCEEEEecCCCCCcHHHHHHHhccc-CCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~-G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..-+||+.+|..+.+..|..+|.+| |.|..+++-+ +..+|.|+|||||+|.+++-|.-|- .
T Consensus 49 ~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsR-----------------nkrTGNSKgYAFVEFEs~eVA~IaAET 111 (214)
T KOG4208|consen 49 EGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSR-----------------NKRTGNSKGYAFVEFESEEVAKIAAET 111 (214)
T ss_pred ccceeecccccchhHHHHhhhhhhcCCeeEEEEeec-----------------ccccCCcCceEEEEeccHHHHHHHHHH
Confidence 4569999999999999999999998 6666666633 2257889999999999999999887 6
Q ss_pred hcCceecceeeEEecCCC
Q 015974 303 FNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (397)
||+..|.|+.|.|..--+
T Consensus 112 MNNYLl~e~lL~c~vmpp 129 (214)
T KOG4208|consen 112 MNNYLLMEHLLECHVMPP 129 (214)
T ss_pred hhhhhhhhheeeeEEeCc
Confidence 999999999999887644
No 97
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.49 E-value=7e-08 Score=104.27 Aligned_cols=138 Identities=20% Similarity=0.277 Sum_probs=109.3
Q ss_pred cCCCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHH
Q 015974 220 DEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (397)
Q Consensus 220 ~~~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~ 299 (397)
++....+|||+|||+..+++.+|+..|..+|.|.+|.|-+..+ ++..-||||.|.+...+-.
T Consensus 367 DD~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~------------------~~esa~~f~~~~n~dmtp~ 428 (975)
T KOG0112|consen 367 DDFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHI------------------KTESAYAFVSLLNTDMTPS 428 (975)
T ss_pred cchhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCC------------------CcccchhhhhhhccccCcc
Confidence 4466789999999999999999999999999999998843221 2233599999999999888
Q ss_pred HH-HhcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCC
Q 015974 300 AL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (397)
Q Consensus 300 Al-~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~t 378 (397)
|+ .+.+..|..-.+++.+..+ .....+.+++++|+.-+....|...|..| |.|..|.+-.
T Consensus 429 ak~e~s~~~I~~g~~r~glG~~-----------kst~ttr~~sgglg~w~p~~~l~r~fd~f----Gpir~Idy~h---- 489 (975)
T KOG0112|consen 429 AKFEESGPLIGNGTHRIGLGQP-----------KSTPTTRLQSGGLGPWSPVSRLNREFDRF----GPIRIIDYRH---- 489 (975)
T ss_pred cchhhcCCccccCccccccccc-----------ccccceeeccCCCCCCChHHHHHHHhhcc----Ccceeeeccc----
Confidence 87 6877777554555554432 23456889999999999999999999999 8899877633
Q ss_pred CCCccEEEEEeccccccc
Q 015974 379 RVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 379 g~~kGfAFV~F~s~e~A~ 396 (397)
...||||+|.+...|+
T Consensus 490 --gq~yayi~yes~~~aq 505 (975)
T KOG0112|consen 490 --GQPYAYIQYESPPAAQ 505 (975)
T ss_pred --CCcceeeecccCccch
Confidence 3459999999988775
No 98
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=98.47 E-value=1.3e-07 Score=91.24 Aligned_cols=74 Identities=18% Similarity=0.325 Sum_probs=67.7
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
+.+.+|+||||.+.+|.++|+..|.+||+|.+|.|.. +|+||.|...++|..|+
T Consensus 76 k~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk-------------------------dy~fvh~d~~eda~~air 130 (346)
T KOG0109|consen 76 KASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK-------------------------DYAFVHFDRAEDAVEAIR 130 (346)
T ss_pred CCccccccCCCCccccCHHHhhhhcccCCceeeeeec-------------------------ceeEEEEeeccchHHHHh
Confidence 4467899999999999999999999999999998843 59999999999999999
Q ss_pred HhcCceecceeeEEecCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (397)
.|+++.|.|++|+|+.+...
T Consensus 131 ~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 131 GLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred cccccccccceeeeeeeccc
Confidence 69999999999999998653
No 99
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=98.46 E-value=2.2e-07 Score=88.74 Aligned_cols=83 Identities=25% Similarity=0.402 Sum_probs=73.2
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
..+.|.|||-.||...++.+|..+|-.||.|.+.++..+. -++.|++|+||.|.++.+++.||
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDR-----------------ATNQSKCFGFVSfDNp~SaQaAI 344 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDR-----------------ATNQSKCFGFVSFDNPASAQAAI 344 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehh-----------------ccccccceeeEecCCchhHHHHH
Confidence 4457999999999999999999999999999998886553 34567899999999999999999
Q ss_pred -HhcCceecceeeEEecCCCC
Q 015974 302 -AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~ 321 (397)
.+||..|+-++|.|+.-.++
T Consensus 345 qAMNGFQIGMKRLKVQLKRPk 365 (371)
T KOG0146|consen 345 QAMNGFQIGMKRLKVQLKRPK 365 (371)
T ss_pred HHhcchhhhhhhhhhhhcCcc
Confidence 79999999999999887654
No 100
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.44 E-value=3.3e-07 Score=94.88 Aligned_cols=81 Identities=14% Similarity=0.311 Sum_probs=70.2
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....+.|||.+|+..+...+|.++|++||.|+-..+++.. . +..-++|+||+|.+.+.|.+||
T Consensus 402 s~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa--R---------------sPGaRCYGfVTMSts~eAtkCI 464 (940)
T KOG4661|consen 402 STLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA--R---------------SPGARCYGFVTMSTSAEATKCI 464 (940)
T ss_pred cccccceeeeccccchhhhHHHHHHHHhcceeceeeeecC--C---------------CCCcceeEEEEecchHHHHHHH
Confidence 4557889999999999999999999999999988886642 1 2234589999999999999999
Q ss_pred -HhcCceecceeeEEecCC
Q 015974 302 -AFNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~ 319 (397)
.|+.+.|.|+.|.|..+.
T Consensus 465 ~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 465 EHLHRTELHGRMISVEKAK 483 (940)
T ss_pred HHhhhhhhcceeeeeeecc
Confidence 599999999999999875
No 101
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=98.42 E-value=4.2e-07 Score=67.92 Aligned_cols=54 Identities=41% Similarity=0.724 Sum_probs=49.2
Q ss_pred ceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 338 tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+|+|+|||..+++++|+++|..| |.|..+.+..+.. +.++|+|||.|.+.++|.
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~----g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~ 54 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKF----GKVESVRIVRDKD-TKSKGFAFVEFEDEEDAE 54 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhc----CCEEEEEEeeCCC-CCcceEEEEEECCHHHHH
Confidence 58999999999999999999999 8999999998876 478999999999998874
No 102
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=98.41 E-value=2.3e-07 Score=85.73 Aligned_cols=63 Identities=21% Similarity=0.332 Sum_probs=57.2
Q ss_pred CCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 330 APLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 330 ~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+..+.-.+|.|-||-+.++.++|+.+|+.| |.|-.|.|++|..|+.++|||||.|....+|+
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~LrrvFekY----G~vgDVyIPrdr~Tr~sRgFaFVrf~~k~dae 69 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLRRVFEKY----GRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAE 69 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHHHHHHHh----CcccceecccccccccccceeEEEeeecchHH
Confidence 3445667899999999999999999999999 99999999999999999999999998877665
No 103
>PLN03213 repressor of silencing 3; Provisional
Probab=98.39 E-value=2.9e-07 Score=94.05 Aligned_cols=49 Identities=24% Similarity=0.482 Sum_probs=45.4
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTR 392 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~ 392 (397)
..+||||||++.+++++|..+|..| |.|..|.|++. +| ||||||.|.+.
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeF----GsVkdVEIpRE--TG--RGFAFVEMssd 58 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPM----GTVDAVEFVRT--KG--RSFAYIDFSPS 58 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEecc--cC--CceEEEEecCC
Confidence 4789999999999999999999999 99999999954 56 99999999986
No 104
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=98.37 E-value=4.6e-07 Score=75.50 Aligned_cols=56 Identities=23% Similarity=0.585 Sum_probs=49.8
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.-.+.|||+|||+.+|.++++++|..| |.|..|||-.... -+|-|||.|.+..+|.
T Consensus 16 evnriLyirNLp~~ITseemydlFGky----g~IrQIRiG~~k~---TrGTAFVVYedi~dAk 71 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKY----GTIRQIRIGNTKE---TRGTAFVVYEDIFDAK 71 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcc----cceEEEEecCccC---cCceEEEEehHhhhHH
Confidence 346899999999999999999999999 9999999977654 6899999999998874
No 105
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.35 E-value=8.5e-07 Score=87.89 Aligned_cols=79 Identities=20% Similarity=0.411 Sum_probs=70.0
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
.-+.|||..+.++.++++|...|..||+|..|.+-+.+ ..+.++||+||+|.+..+...|+ .
T Consensus 209 ~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~p-----------------t~~~HkGyGfiEy~n~qs~~eAias 271 (544)
T KOG0124|consen 209 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAP-----------------TGRGHKGYGFIEYNNLQSQSEAIAS 271 (544)
T ss_pred hhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccC-----------------CCCCccceeeEEeccccchHHHhhh
Confidence 35679999999999999999999999999999997654 23457899999999999999999 6
Q ss_pred hcCceecceeeEEecCC
Q 015974 303 FNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (397)
+|-..|+|..|+|..+.
T Consensus 272 MNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 272 MNLFDLGGQYLRVGKCV 288 (544)
T ss_pred cchhhcccceEeccccc
Confidence 99999999999998764
No 106
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.34 E-value=6e-07 Score=85.67 Aligned_cols=79 Identities=22% Similarity=0.268 Sum_probs=69.8
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHh
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (397)
+...|||||+.+.+|.++|..+|..||.|..|.|+.+.+ .+.++|||||.|.+.+.+..|+.|
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~-----------------~~~~k~~~yvef~~~~~~~~ay~l 162 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKF-----------------RGHPKGFAYVEFSSYELVEEAYKL 162 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeecccc-----------------CCCcceeEEEecccHhhhHHHhhc
Confidence 357799999999999999999999999999888876643 233569999999999999999999
Q ss_pred cCceecceeeEEecCC
Q 015974 304 NMAVIGGNHIRLDRAC 319 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~ 319 (397)
++..|.|+.|.|.+..
T Consensus 163 ~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 163 DGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCcccccccceeeeee
Confidence 9999999999998864
No 107
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.31 E-value=8.4e-07 Score=89.04 Aligned_cols=142 Identities=15% Similarity=0.188 Sum_probs=99.0
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH-
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (397)
.++.|.++|||+++|+++|..++..||.|..+.+.... --|||+|.+.++|..-+.
T Consensus 27 pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGk-----------------------nQAflem~d~~sAvtmv~~ 83 (492)
T KOG1190|consen 27 PSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGK-----------------------NQAFLEMADEESAVTMVNY 83 (492)
T ss_pred CcceeEeccCCccccHHHHHHhcccccceeeeeeeccc-----------------------hhhhhhhcchhhhhheeec
Confidence 57889999999999999999999999999988773321 279999999998766331
Q ss_pred h--cCceecceeeEEecCCCCcccc--------------------------CC-----CCCCccccccceecCCCCccCc
Q 015974 303 F--NMAVIGGNHIRLDRACPPRKKL--------------------------KG-----EDAPLYDIKKTVFVGNLPFDVK 349 (397)
Q Consensus 303 l--ng~~l~Gr~I~V~~a~~~~k~~--------------------------~~-----~~~~~~~~~~tLfVgNLp~~vt 349 (397)
+ ---.+.|++|.|+++....-.. .. +......+--.++|+|+-+.++
T Consensus 84 y~~~~p~lr~~~~yiq~sn~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVs 163 (492)
T KOG1190|consen 84 YTSVTPVLRGQPIYIQYSNHSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVS 163 (492)
T ss_pred ccccCccccCcceeehhhhHHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeE
Confidence 1 1224678888888763210000 00 0000111234678899999999
Q ss_pred HHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 350 DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 350 eedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
-+-|+++|+.| |.|..|.-... ...=-|.|+|.+...|+
T Consensus 164 lDVLHqvFS~f----G~VlKIiTF~K----nn~FQALvQy~d~~sAq 202 (492)
T KOG1190|consen 164 LDVLHQVFSKF----GFVLKIITFTK----NNGFQALVQYTDAVSAQ 202 (492)
T ss_pred HHHHHHHHhhc----ceeEEEEEEec----ccchhhhhhccchhhHH
Confidence 99999999999 88887643222 12235899999887774
No 108
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.30 E-value=1.2e-06 Score=90.04 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=66.5
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
.....+|||+|||++++...|.++|..||.|...+|..... .+++.+||||+|.+..+++.||
T Consensus 285 ~~~~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~-----------------~~~~~~fgFV~f~~~~~~~~~i 347 (419)
T KOG0116|consen 285 RADGLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSP-----------------GGKNPCFGFVEFENAAAVQNAI 347 (419)
T ss_pred eecccceEeecCCCCCCHHHHHHHHhhcccccccceEEecc-----------------CCCcCceEEEEEeecchhhhhh
Confidence 34456699999999999999999999999998888755320 1223379999999999999999
Q ss_pred HhcCceecceeeEEecCC
Q 015974 302 AFNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~ 319 (397)
.-+-..+++++|.|.--.
T Consensus 348 ~Asp~~ig~~kl~Veek~ 365 (419)
T KOG0116|consen 348 EASPLEIGGRKLNVEEKR 365 (419)
T ss_pred hcCccccCCeeEEEEecc
Confidence 877888899999997643
No 109
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.27 E-value=6.2e-06 Score=82.10 Aligned_cols=149 Identities=13% Similarity=0.151 Sum_probs=114.0
Q ss_pred CCccCEEEEecCCCC-CcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~-~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
..+.+.+.|.+|... +.-+-|.++|-.||.|..|.+|... -|.|.|++.+..++++|
T Consensus 284 ~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk----------------------~gtamVemgd~~aver~ 341 (494)
T KOG1456|consen 284 GAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK----------------------PGTAMVEMGDAYAVERA 341 (494)
T ss_pred CCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc----------------------cceeEEEcCcHHHHHHH
Confidence 445788999999876 6778899999999999999997643 27999999999999999
Q ss_pred H-HhcCceecceeeEEecCCCCccc-----------------------cCC-----CCCCccccccceecCCCCccCcHH
Q 015974 301 L-AFNMAVIGGNHIRLDRACPPRKK-----------------------LKG-----EDAPLYDIKKTVFVGNLPFDVKDE 351 (397)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~~k~-----------------------~~~-----~~~~~~~~~~tLfVgNLp~~vtee 351 (397)
+ .||+..+.|.+|.|+.+...--. ... .......++++|+.-|.|..+|++
T Consensus 342 v~hLnn~~lfG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe 421 (494)
T KOG1456|consen 342 VTHLNNIPLFGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEE 421 (494)
T ss_pred HHHhccCccccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHH
Confidence 9 59999999999999987532100 000 001224578899999999999999
Q ss_pred HHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEecccccccC
Q 015974 352 EIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWIE 397 (397)
Q Consensus 352 dL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~e 397 (397)
.|..+|..... ...+|+|.... .....-|.++|++..+|.|
T Consensus 422 ~l~~i~nek~v---~~~svkvFp~k--serSssGllEfe~~s~Ave 462 (494)
T KOG1456|consen 422 QLIGICNEKDV---PPTSVKVFPLK--SERSSSGLLEFENKSDAVE 462 (494)
T ss_pred HHHHHhhhcCC---CcceEEeeccc--ccccccceeeeehHHHHHH
Confidence 99999987632 24566665553 2334468999999988864
No 110
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=98.26 E-value=7.9e-07 Score=91.74 Aligned_cols=56 Identities=25% Similarity=0.557 Sum_probs=53.4
Q ss_pred cceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 337 ~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+.|||||+|+++++++|..+|+.. |.|.+++++.|+.||.++||||++|.+.+.|.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~----g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~ 74 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGV----GPVLSFRLVYDRETGKPKGFGFCEFTDEETAE 74 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhcc----CccceeeecccccCCCcCceeeEecCchhhHH
Confidence 899999999999999999999998 99999999999999999999999999987663
No 111
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.25 E-value=2.2e-06 Score=90.99 Aligned_cols=90 Identities=22% Similarity=0.383 Sum_probs=74.5
Q ss_pred CCCCcCCCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHH
Q 015974 216 EGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (397)
Q Consensus 216 e~~d~~~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e 295 (397)
..+|+.+.....|||+||++.++++.|...|..||+|.+|+|+....... ..+.+-|+||-|.+..
T Consensus 165 gsfDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeE--------------k~r~r~cgfvafmnR~ 230 (877)
T KOG0151|consen 165 GSFDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEE--------------KRRERNCGFVAFMNRA 230 (877)
T ss_pred CcCCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhh--------------hccccccceeeehhhh
Confidence 34566677788899999999999999999999999999998876431111 1123468999999999
Q ss_pred HHHHHH-HhcCceecceeeEEecCC
Q 015974 296 STEAAL-AFNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 296 ~A~~Al-~lng~~l~Gr~I~V~~a~ 319 (397)
+|++|+ .|+|..+.++.|++.|+.
T Consensus 231 D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 231 DAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred hHHHHHHHhcceeeeeeeeeecccc
Confidence 999999 699999999999999984
No 112
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=98.24 E-value=1.1e-06 Score=79.48 Aligned_cols=52 Identities=27% Similarity=0.415 Sum_probs=46.9
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.||||||+..+++.+|..+|..| |.|..|-|.+. +.|||||+|.++-+|.
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~y----G~lrsvWvArn-----PPGfAFVEFed~RDA~ 61 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKY----GPLRSVWVARN-----PPGFAFVEFEDPRDAE 61 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhc----CcceeEEEeec-----CCCceEEeccCcccHH
Confidence 5899999999999999999999999 88999888664 6789999999988875
No 113
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.23 E-value=1.9e-06 Score=87.20 Aligned_cols=74 Identities=20% Similarity=0.293 Sum_probs=64.2
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
.+..++|||+|||++.|.+.|+.-|..||.|..+.|+. .|+++| .|.|.+++.|+.|+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime--------------------~GkskG--VVrF~s~edAEra~ 590 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME--------------------NGKSKG--VVRFFSPEDAERAC 590 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc--------------------cCCccc--eEEecCHHHHHHHH
Confidence 45678999999999999999999999999998776632 234556 89999999999999
Q ss_pred -HhcCceecceeeEEec
Q 015974 302 -AFNMAVIGGNHIRLDR 317 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~ 317 (397)
.+++..|.||.|.|.+
T Consensus 591 a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 591 ALMNGSRLDGRNIKVTY 607 (608)
T ss_pred HHhccCcccCceeeeee
Confidence 5999999999999975
No 114
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.22 E-value=3.3e-06 Score=80.87 Aligned_cols=79 Identities=23% Similarity=0.382 Sum_probs=68.0
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
+.+|+|.|||+.++.++|.++|..||.+..+-+..+ ..|.+.|.|-|.|...++|.+|+ .+
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~------------------~~G~s~Gta~v~~~r~~DA~~avk~~ 144 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD------------------RAGRSLGTADVSFNRRDDAERAVKKY 144 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccC------------------CCCCCCccceeeecchHhHHHHHHHh
Confidence 577999999999999999999999997776666332 24567799999999999999999 69
Q ss_pred cCceecceeeEEecCCCC
Q 015974 304 NMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (397)
++..++|+.|.+.....+
T Consensus 145 ~gv~ldG~~mk~~~i~~~ 162 (243)
T KOG0533|consen 145 NGVALDGRPMKIEIISSP 162 (243)
T ss_pred cCcccCCceeeeEEecCc
Confidence 999999999998887654
No 115
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.16 E-value=9.1e-07 Score=82.56 Aligned_cols=58 Identities=17% Similarity=0.388 Sum_probs=54.7
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEecccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNW 395 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A 395 (397)
...++||||+|...+++.-|...|-+| |.|..|.++.|..++++||||||+|.-.++|
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPF----GDI~dIqiPlDyesqkHRgFgFVefe~aEDA 65 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPF----GDIKDIQIPLDYESQKHRGFGFVEFEEAEDA 65 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccc----cchhhcccccchhcccccceeEEEeeccchh
Confidence 456899999999999999999999999 9999999999999999999999999988776
No 116
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.11 E-value=1.2e-06 Score=87.59 Aligned_cols=144 Identities=21% Similarity=0.186 Sum_probs=104.6
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhcC
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNM 305 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~lng 305 (397)
..|-|.||.+.+|.++++.+|.-+|.|..++|+-.. .+...| ...-.|||-|.+..++..|..|..
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~-~d~~~p-------------v~sRtcyVkf~d~~sv~vaQhLtn 73 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNV-DDSKIP-------------VISRTCYVKFLDSQSVTVAQHLTN 73 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCC-CCccCc-------------ceeeeEEEeccCCcceeHHhhhcc
Confidence 479999999999999999999999999999884321 122222 234589999999999999998999
Q ss_pred ceecceeeEEecCCCCcc-----------------------ccCCCC--------------CCc----------cccccc
Q 015974 306 AVIGGNHIRLDRACPPRK-----------------------KLKGED--------------APL----------YDIKKT 338 (397)
Q Consensus 306 ~~l~Gr~I~V~~a~~~~k-----------------------~~~~~~--------------~~~----------~~~~~t 338 (397)
++|-++.|.|-++...-. ...+.. .|. .+..++
T Consensus 74 tvfvdraliv~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt 153 (479)
T KOG4676|consen 74 TVFVDRALIVRPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRT 153 (479)
T ss_pred ceeeeeeEEEEecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhh
Confidence 999999888866532100 000000 000 112468
Q ss_pred eecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEecc
Q 015974 339 VFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (397)
Q Consensus 339 LfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s 391 (397)
|+|++|+..|...++..+|..+ |.|.+.++.- +....+|-|.|..
T Consensus 154 ~~v~sl~~~~~l~e~~e~f~r~----Gev~ya~~as----k~~s~~c~~sf~~ 198 (479)
T KOG4676|consen 154 REVQSLISAAILPESGESFERK----GEVSYAHTAS----KSRSSSCSHSFRK 198 (479)
T ss_pred hhhhcchhhhcchhhhhhhhhc----chhhhhhhhc----cCCCcchhhhHhh
Confidence 9999999999999999999998 8888877644 3345567677754
No 117
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.10 E-value=4.1e-06 Score=86.99 Aligned_cols=71 Identities=31% Similarity=0.425 Sum_probs=62.8
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|+|-|||..++.++|+.+|+.||+|..|+.-. ..+|.+||+|.+..+|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~----------------------~~~~~~~v~FyDvR~A~~Al 129 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP----------------------NKRGIVFVEFYDVRDAERAL 129 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc----------------------ccCceEEEEEeehHhHHHHH
Confidence 34578999999999999999999999999998876511 24589999999999999999
Q ss_pred -HhcCceecceeeE
Q 015974 302 -AFNMAVIGGNHIR 314 (397)
Q Consensus 302 -~lng~~l~Gr~I~ 314 (397)
+|++..+.|+.|.
T Consensus 130 k~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 130 KALNRREIAGKRIK 143 (549)
T ss_pred HHHHHHHhhhhhhc
Confidence 7999999999888
No 118
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.02 E-value=6.7e-06 Score=76.14 Aligned_cols=61 Identities=25% Similarity=0.420 Sum_probs=55.2
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
......+||+.+|.-+.+.+|..+|.+|+ |.|..+|+-|...||+++|||||+|.+.+.|.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~---g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~ 106 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFG---GTVTRFRLSRNKRTGNSKGYAFVEFESEEVAK 106 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcC---CeeEEEEeecccccCCcCceEEEEeccHHHHH
Confidence 44567899999999999999999999984 88999999999999999999999999998773
No 119
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=98.01 E-value=5.9e-06 Score=75.44 Aligned_cols=55 Identities=25% Similarity=0.474 Sum_probs=47.9
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++|||+|||.++.+.+|.++|.+| |.|..|.|..-+ .+.+||||.|.++-+|.
T Consensus 5 ~~~~iyvGNLP~diRekeieDlFyKy----g~i~~ieLK~r~---g~ppfafVeFEd~RDAe 59 (241)
T KOG0105|consen 5 NSRRIYVGNLPGDIREKEIEDLFYKY----GRIREIELKNRP---GPPPFAFVEFEDPRDAE 59 (241)
T ss_pred ccceEEecCCCcchhhccHHHHHhhh----cceEEEEeccCC---CCCCeeEEEecCccchh
Confidence 46899999999999999999999999 999999885543 35789999999987775
No 120
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=98.00 E-value=3.7e-06 Score=73.18 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=54.6
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....|||.+++..+++++|.+.|+.| |.|.+|.|--|..||..+|||.|.|.+...|+
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dy----GeiKNihLNLDRRtGy~KGYaLvEYet~keAq 128 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADY----GEIKNIHLNLDRRTGYVKGYALVEYETLKEAQ 128 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhc----ccccceeeccccccccccceeeeehHhHHHHH
Confidence 35789999999999999999999999 99999999999999999999999999988775
No 121
>smart00361 RRM_1 RNA recognition motif.
Probab=97.76 E-value=3.1e-05 Score=59.92 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=37.1
Q ss_pred HHHHHHHhc----cCCCCCCCeEEEE-EeeCCCC--CCCccEEEEEeccccccc
Q 015974 350 DEEIYQLFC----GLNDLESSVEAVR-VIRHPHM--RVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 350 eedL~~~F~----~f~~~~G~I~~Vr-i~rd~~t--g~~kGfAFV~F~s~e~A~ 396 (397)
+++|+++|+ .| |.|..|. |+.+..+ +.++|||||.|.+.++|.
T Consensus 2 ~~~l~~~~~~~~~~f----G~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~ 51 (70)
T smart00361 2 DEDFEREFSEEEEYF----GEVGKINKIYIDNVGYENHKRGNVYITFERSEDAA 51 (70)
T ss_pred chhHHHHHHHHHHhc----CCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHH
Confidence 578999998 88 9999995 7777666 899999999999998884
No 122
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.75 E-value=0.0002 Score=59.53 Aligned_cols=77 Identities=22% Similarity=0.282 Sum_probs=56.7
Q ss_pred CEEEEecCCCCCcHHHHHHHhccc--CCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKF--GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~--G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
.||.|+|||-..|.+.|.+++... |. ..++..|+ ++.++.+.|||||-|.+++.|.... .
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~---yDF~YLPi--------------Df~~~~N~GYAFVNf~~~~~~~~F~~~ 64 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGK---YDFFYLPI--------------DFKNKCNLGYAFVNFTSPQAAIRFYKA 64 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCc---ceEEEeee--------------eccCCCceEEEEEEcCCHHHHHHHHHH
Confidence 689999999999999999988853 43 33333332 3345678899999999999999877 6
Q ss_pred hcCceec----ceeeEEecCC
Q 015974 303 FNMAVIG----GNHIRLDRAC 319 (397)
Q Consensus 303 lng~~l~----Gr~I~V~~a~ 319 (397)
++|..+. .+...|.+|.
T Consensus 65 f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 65 FNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred HcCCccccCCCCcEEEEehhH
Confidence 8888774 2344555553
No 123
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.72 E-value=3.6e-05 Score=73.43 Aligned_cols=79 Identities=19% Similarity=0.294 Sum_probs=67.6
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
...||+|.|.-+++.+.|...|.+|-.-...+++++. .+|+++||+||-|.++.++..|+ ++
T Consensus 190 DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk-----------------RTgKSkgygfVSf~~pad~~rAmrem 252 (290)
T KOG0226|consen 190 DFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK-----------------RTGKSKGYGFVSFRDPADYVRAMREM 252 (290)
T ss_pred cceeecccccccccHHHHHHHHHhccchhhccccccc-----------------cccccccceeeeecCHHHHHHHHHhh
Confidence 5679999999999999999999998766555554432 57889999999999999999999 79
Q ss_pred cCceecceeeEEecCCC
Q 015974 304 NMAVIGGNHIRLDRACP 320 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~ 320 (397)
+|..++.|+|.+..+..
T Consensus 253 ~gkyVgsrpiklRkS~w 269 (290)
T KOG0226|consen 253 NGKYVGSRPIKLRKSEW 269 (290)
T ss_pred cccccccchhHhhhhhH
Confidence 99999999998877653
No 124
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.66 E-value=0.00021 Score=71.42 Aligned_cols=139 Identities=16% Similarity=0.200 Sum_probs=102.7
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH-
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (397)
.+-.|.|++|-..+++.+|.+..+.||.|.-|.++-. +-.|.|+|.+.+.|..|+.
T Consensus 30 ~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~-----------------------~r~alvefedi~~akn~Vnf 86 (494)
T KOG1456|consen 30 PSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPH-----------------------KRQALVEFEDIEGAKNCVNF 86 (494)
T ss_pred CCceEEEeccccccchhHHHHHHhcCCceEEEEeccc-----------------------cceeeeeeccccchhhheeh
Confidence 3567999999999999999999999999976655221 1269999999999999983
Q ss_pred --hcCceecceeeEEecCCCCccccCCCCCCccccccceec--CCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCC
Q 015974 303 --FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFV--GNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (397)
Q Consensus 303 --lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfV--gNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~t 378 (397)
-+...+.|+.-.+..+....-...+.+. ..+...|.+ -|--+.+|-+-|+.+...+ |.|..|-|.+. +
T Consensus 87 aa~n~i~i~gq~Al~NyStsq~i~R~g~es--~~pN~VLl~TIlNp~YpItvDVly~Icnp~----GkVlRIvIfkk--n 158 (494)
T KOG1456|consen 87 AADNQIYIAGQQALFNYSTSQCIERPGDES--ATPNKVLLFTILNPQYPITVDVLYTICNPQ----GKVLRIVIFKK--N 158 (494)
T ss_pred hccCcccccCchhhcccchhhhhccCCCCC--CCCCeEEEEEeecCccccchhhhhhhcCCC----CceEEEEEEec--c
Confidence 4555677877777777543333333221 122334443 3555778999999999998 99999988776 2
Q ss_pred CCCccEEEEEeccccccc
Q 015974 379 RVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 379 g~~kGfAFV~F~s~e~A~ 396 (397)
|. .|.|+|.+.+.|+
T Consensus 159 gV---QAmVEFdsv~~Aq 173 (494)
T KOG1456|consen 159 GV---QAMVEFDSVEVAQ 173 (494)
T ss_pred ce---eeEEeechhHHHH
Confidence 33 7999999998875
No 125
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.66 E-value=2.8e-05 Score=77.05 Aligned_cols=60 Identities=18% Similarity=0.284 Sum_probs=55.9
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+|.+.|||..|.+-++.++|.-+|+.| |.|.+|.|++|..||.+-.||||+|.+.++++
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrF----G~i~sceVIRD~ktgdsLqyaFiEFen~escE 295 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRF----GKIVSCEVIRDRKTGDSLQYAFIEFENKESCE 295 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhc----ccceeeeEEecccccchhheeeeeecchhhHH
Confidence 4567899999999999999999999999 99999999999999999999999999988764
No 126
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=97.65 E-value=0.00017 Score=58.15 Aligned_cols=67 Identities=21% Similarity=0.237 Sum_probs=45.1
Q ss_pred CEEEEecCCCCCcHHHH----HHHhcccC-CeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 226 RTIFVGNLPLKVKKKTL----IKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L----~~~Fs~~G-~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
..|||.|||...+...| +.++..|| .|.+| +.|.|+|.|.+++.|..|
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---------------------------~~~tAilrF~~~~~A~RA 55 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---------------------------SGGTAILRFPNQEFAERA 55 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----------------------------TT-EEEEESSHHHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---------------------------eCCEEEEEeCCHHHHHHH
Confidence 35999999999887665 45666776 33333 126899999999999999
Q ss_pred H-HhcCceecceeeEEecCC
Q 015974 301 L-AFNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~ 319 (397)
+ .|+|..+.|+.|.|.+..
T Consensus 56 ~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 56 QKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp HHHHTT--SSSS--EEESS-
T ss_pred HHhhcccccccceEEEEEcC
Confidence 9 699999999999999974
No 127
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=97.54 E-value=0.00012 Score=60.87 Aligned_cols=58 Identities=19% Similarity=0.220 Sum_probs=51.8
Q ss_pred cceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 337 ~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+||.|+|||...|.++|.+++..+- .|..-.+.++.|..++.+.|||||.|.+++.|.
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~--~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~ 59 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHF--KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAI 59 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhc--cCcceEEEeeeeccCCCceEEEEEEcCCHHHHH
Confidence 6899999999999999999996542 388999999999999999999999999988764
No 128
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.46 E-value=0.0001 Score=72.95 Aligned_cols=53 Identities=28% Similarity=0.520 Sum_probs=47.1
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....+|||++|...+++.+|+++|.+| |.|.+|++... +++|||+|.+..+|+
T Consensus 226 ~~I~tLyIg~l~d~v~e~dIrdhFyqy----Geirsi~~~~~------~~CAFv~ftTR~aAE 278 (377)
T KOG0153|consen 226 TSIKTLYIGGLNDEVLEQDIRDHFYQY----GEIRSIRILPR------KGCAFVTFTTREAAE 278 (377)
T ss_pred cceeEEEecccccchhHHHHHHHHhhc----CCeeeEEeecc------cccceeeehhhHHHH
Confidence 346899999999999999999999999 99999999665 459999999998874
No 129
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=97.42 E-value=6.7e-05 Score=75.92 Aligned_cols=109 Identities=17% Similarity=0.261 Sum_probs=86.6
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-HhcC
Q 015974 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNM 305 (397)
Q Consensus 227 tVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng 305 (397)
.+|++||.+.++..+|..+|...---.+-.++. ..|||||.+.+...|..|+ .++|
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl~-----------------------k~gyafvd~pdq~wa~kaie~~sg 59 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV-----------------------KSGYAFVDCPDQQWANKAIETLSG 59 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCcceee-----------------------ecceeeccCCchhhhhhhHHhhch
Confidence 589999999999999999998531101111111 2389999999999999999 5777
Q ss_pred c-eecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEe
Q 015974 306 A-VIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVI 373 (397)
Q Consensus 306 ~-~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~ 373 (397)
. .+.|.++.|..+.+.+ ..++.+-|+|+|+...++.|..+...| |.|+.|..+
T Consensus 60 k~elqGkr~e~~~sv~kk-----------qrsrk~Qirnippql~wevld~Ll~qy----g~ve~~eqv 113 (584)
T KOG2193|consen 60 KVELQGKRQEVEHSVPKK-----------QRSRKIQIRNIPPQLQWEVLDSLLAQY----GTVENCEQV 113 (584)
T ss_pred hhhhcCceeeccchhhHH-----------HHhhhhhHhcCCHHHHHHHHHHHHhcc----CCHhHhhhh
Confidence 6 6789999998886542 235779999999999999999999999 899988653
No 130
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.42 E-value=2e-05 Score=85.46 Aligned_cols=149 Identities=19% Similarity=0.175 Sum_probs=112.6
Q ss_pred CEEEEecCCCCCcHH-HHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcc-eEEEEecCHHHHHHHHHh
Q 015974 226 RTIFVGNLPLKVKKK-TLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSV-HAYIVFKSEQSTEAALAF 303 (397)
Q Consensus 226 rtVFVgNLp~~~Tee-~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG-~AFV~F~s~e~A~~Al~l 303 (397)
+...+.|+.+..... ..+..|..+|.|..|++.-.. . ..+.+ ++++++..+.+++.|+..
T Consensus 572 ~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g-----~-------------k~h~q~~~~~~~s~~~~~esat~p 633 (881)
T KOG0128|consen 572 REKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRG-----F-------------KAHEQPQQQKVQSKHGSAESATVP 633 (881)
T ss_pred hhhcccCCCcchhhHHhhHHHhhcccccccccCcccc-----c-------------cccccchhhhhhccccchhhcccc
Confidence 446777887777665 567888899999988773211 0 01223 889999999999999998
Q ss_pred cCceecceeeEEecCCCCccccCCCCCC-ccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCc
Q 015974 304 NMAVIGGNHIRLDRACPPRKKLKGEDAP-LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~-~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~k 382 (397)
.+..+.++.+.|..+.+..+.......+ ......++||.||+..+...+|...|..+ |.+..|++......+..+
T Consensus 634 a~~~~a~~~~av~~ad~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~----~~~e~vqi~~h~n~~~~r 709 (881)
T KOG0128|consen 634 AGGALANRSAAVGLADAEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPS----GTIEVVQIVIHKNEKRFR 709 (881)
T ss_pred cccccCCccccCCCCCchhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCcc----chhhhHHHHHHhhccccc
Confidence 8999999999998887654222111111 01234689999999999999999999998 778888877666779999
Q ss_pred cEEEEEeccccccc
Q 015974 383 GIAYVLFKTRDNWI 396 (397)
Q Consensus 383 GfAFV~F~s~e~A~ 396 (397)
|+|||.|...++|.
T Consensus 710 G~~Y~~F~~~~~~~ 723 (881)
T KOG0128|consen 710 GKAYVEFLKPEHAG 723 (881)
T ss_pred cceeeEeecCCchh
Confidence 99999999887764
No 131
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=97.41 E-value=0.00017 Score=68.88 Aligned_cols=145 Identities=19% Similarity=0.230 Sum_probs=99.0
Q ss_pred CEEEEecCCCCCcHHH-H--HHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 226 RTIFVGNLPLKVKKKT-L--IKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~-L--~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...|++++-..+..+- | ...|+.|-.+....+..+. .+.-++++|+.|........+-
T Consensus 97 f~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~------------------p~~~~~~~~~~~k~s~a~~k~~~ 158 (290)
T KOG0226|consen 97 FRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR------------------PQPIRPEAFESFKASDALLKAET 158 (290)
T ss_pred ccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC------------------CCccCcccccCcchhhhhhhhcc
Confidence 4467777766655544 3 5566666554444332221 1233579999998777666665
Q ss_pred HhcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~ 381 (397)
.-++..+.-++|++............+. .+....||.|.|.-.++.+-|-..|..| -.....++++|.-||++
T Consensus 159 ~~~~Kki~~~~VR~a~gtswedPsl~ew---~~~DfRIfcgdlgNevnd~vl~raf~Kf----psf~~akviRdkRTgKS 231 (290)
T KOG0226|consen 159 EKEKKKIGKPPVRLAAGTSWEDPSLAEW---DEDDFRIFCGDLGNEVNDDVLARAFKKF----PSFQKAKVIRDKRTGKS 231 (290)
T ss_pred ccccccccCcceeeccccccCCcccccC---ccccceeecccccccccHHHHHHHHHhc----cchhhcccccccccccc
Confidence 3556666666666666544322221111 2345789999999999999999999999 45677889999999999
Q ss_pred ccEEEEEecccccc
Q 015974 382 KGIAYVLFKTRDNW 395 (397)
Q Consensus 382 kGfAFV~F~s~e~A 395 (397)
+||+||.|.+..++
T Consensus 232 kgygfVSf~~pad~ 245 (290)
T KOG0226|consen 232 KGYGFVSFRDPADY 245 (290)
T ss_pred ccceeeeecCHHHH
Confidence 99999999998775
No 132
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.40 E-value=0.00029 Score=75.08 Aligned_cols=148 Identities=13% Similarity=0.032 Sum_probs=104.4
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCC-cceEEEEecCHHHHHHHHH
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENAD-SVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~s-kG~AFV~F~s~e~A~~Al~ 302 (397)
+.+.+-+.++++.+...+++.||...- |..+.|..+ +-+.+ .|-++|.|.....++.|+.
T Consensus 310 d~~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~------------------~v~~~~tG~~~v~f~~~~~~q~A~~ 370 (944)
T KOG4307|consen 310 DKYYNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSEN------------------RVAPPQTGRKTVMFTPQAPFQNAFT 370 (944)
T ss_pred hhheeeecccccccccchhhhhcCccc-ccccchhhh------------------hcCCCcCCceEEEecCcchHHHHHh
Confidence 346677789999999999999998532 222332111 11122 5899999999999999999
Q ss_pred hcCceecceeeEEecCCCCc-------c----------------------ccCCCC-CCccccccceecCCCCccCcHHH
Q 015974 303 FNMAVIGGNHIRLDRACPPR-------K----------------------KLKGED-APLYDIKKTVFVGNLPFDVKDEE 352 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~-------k----------------------~~~~~~-~~~~~~~~tLfVgNLp~~vteed 352 (397)
-|.+.+-.|.+.|..+.... . ...+.. ........+|||..||..++..+
T Consensus 371 rn~~~~~~R~~q~~P~g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~ 450 (944)
T KOG4307|consen 371 RNPSDDVNRPFQTGPPGNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVP 450 (944)
T ss_pred cCchhhhhcceeecCCCccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccc
Confidence 88888888888886653110 0 000000 01123467999999999999999
Q ss_pred HHHHhccCCCCCCCeEE-EEEeeCCCCCCCccEEEEEecccccc
Q 015974 353 IYQLFCGLNDLESSVEA-VRVIRHPHMRVGKGIAYVLFKTRDNW 395 (397)
Q Consensus 353 L~~~F~~f~~~~G~I~~-Vri~rd~~tg~~kGfAFV~F~s~e~A 395 (397)
+.++|... -.|+. |.|.+.+ +++.++.|||.|...+++
T Consensus 451 ~v~~f~~~----~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~ 489 (944)
T KOG4307|consen 451 PVNKFMGA----AAVEDFIELTRLP-TDLLRPAAFVAFIHPTAP 489 (944)
T ss_pred hhhhhhhh----hhhhheeEeccCC-cccccchhhheecccccc
Confidence 99999875 34555 7777775 488999999999986654
No 133
>PLN03121 nucleic acid binding protein; Provisional
Probab=97.35 E-value=0.00016 Score=69.04 Aligned_cols=38 Identities=26% Similarity=0.389 Sum_probs=35.6
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCC
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP 376 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~ 376 (397)
..++|||+||++.+|+++|++||+.| |.|.+|+|+++.
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~----G~I~~V~I~~D~ 41 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHC----GAIEHVEIIRSG 41 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhc----CCeEEEEEecCC
Confidence 35899999999999999999999999 999999999994
No 134
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.29 E-value=0.00014 Score=71.59 Aligned_cols=81 Identities=32% Similarity=0.492 Sum_probs=67.6
Q ss_pred ccCEEE-EecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 224 LLRTIF-VGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 224 ~~rtVF-VgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++| |+||++.++.++|..+|..||.|..++++..+ .++..+|||||.|........++.
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~-----------------~s~~~kg~a~~~~~~~~~~~~~~~ 245 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE-----------------ESGDSKGFAYVDFSAGNSKKLALN 245 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCC-----------------CccchhhhhhhhhhhchhHHHHhh
Confidence 345566 99999999999999999999999999886543 345567999999999999988885
Q ss_pred hcCceecceeeEEecCCCC
Q 015974 303 FNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (397)
.+...+.++++.+....+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~ 264 (285)
T KOG4210|consen 246 DQTRSIGGRPLRLEEDEPR 264 (285)
T ss_pred cccCcccCcccccccCCCC
Confidence 4677888999999887653
No 135
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.25 E-value=0.00025 Score=68.62 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=35.5
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCC
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH 377 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~ 377 (397)
.++|||+|||+.+++++|+++|+.| |.|.+|+|+++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~----G~I~~V~I~~d~~ 41 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFS----GDIEYVEMQSENE 41 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeecCC
Confidence 4799999999999999999999999 9999999999853
No 136
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=97.25 E-value=0.00042 Score=65.13 Aligned_cols=54 Identities=22% Similarity=0.436 Sum_probs=47.0
Q ss_pred cccceecCCCCccCcHHHHHH----HhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEecccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQ----LFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNW 395 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~----~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A 395 (397)
+..||||.||+..+..++|+. +|++| |.|..|...+. ...||-|||.|.+.+.|
T Consensus 8 pn~TlYInnLnekI~~~elkrsL~~LFsqf----G~ildI~a~kt---~KmRGQA~VvFk~~~~A 65 (221)
T KOG4206|consen 8 PNGTLYINNLNEKIKKDELKRSLYLLFSQF----GKILDISAFKT---PKMRGQAFVVFKETEAA 65 (221)
T ss_pred CCceEeehhccccccHHHHHHHHHHHHHhh----CCeEEEEecCC---CCccCceEEEecChhHH
Confidence 345999999999999998887 99999 99999987665 67899999999997765
No 137
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=97.19 E-value=0.0003 Score=75.87 Aligned_cols=51 Identities=22% Similarity=0.517 Sum_probs=46.6
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
++|||||+|+..+++.||.++|+.| |.|.+|.++ .++|+|||.+..+.+|.
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feef----GeiqSi~li------~~R~cAfI~M~~RqdA~ 471 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEF----GEIQSIILI------PPRGCAFIKMVRRQDAE 471 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhc----ccceeEeec------cCCceeEEEEeehhHHH
Confidence 6899999999999999999999999 999999884 46889999999988874
No 138
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.19 E-value=0.00069 Score=67.08 Aligned_cols=81 Identities=16% Similarity=0.379 Sum_probs=60.1
Q ss_pred cCEEEEecCCCCCcHHH----H--HHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHH
Q 015974 225 LRTIFVGNLPLKVKKKT----L--IKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~----L--~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~ 298 (397)
..-|||-+||+.+-.++ | .++|.+||.|..|.+-... + .+++..+.--.||.|.+.++|.
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt------~--------s~nst~~h~gvYITy~~kedAa 179 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKT------S--------SLNSTASHAGVYITYSTKEDAA 179 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccc------c--------ccccccccceEEEEecchHHHH
Confidence 45699999999987666 2 3799999999888772211 0 0111111112499999999999
Q ss_pred HHH-HhcCceecceeeEEecCC
Q 015974 299 AAL-AFNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 299 ~Al-~lng~~l~Gr~I~V~~a~ 319 (397)
.|| +.+|..++||.|+..+..
T Consensus 180 rcIa~vDgs~~DGr~lkatYGT 201 (480)
T COG5175 180 RCIAEVDGSLLDGRVLKATYGT 201 (480)
T ss_pred HHHHHhccccccCceEeeecCc
Confidence 999 699999999999998865
No 139
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=97.14 E-value=0.00043 Score=71.42 Aligned_cols=57 Identities=18% Similarity=0.224 Sum_probs=47.1
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+|||+|||++++..+|.++|..| |.|...+|..-.-.+...+||||.|.+.++++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~F----G~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~ 344 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQF----GPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQ 344 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhc----ccccccceEEeccCCCcCceEEEEEeecchhh
Confidence 3459999999999999999999999 99999888765422333499999999987764
No 140
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.05 E-value=0.00069 Score=67.56 Aligned_cols=89 Identities=22% Similarity=0.222 Sum_probs=71.4
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
....+|||-+||..+++..|..+|.+||.|.. ...+..|+.. |-+...++..+|-|.|.|.++.+|++|+.
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikr-------nK~t~kPki~--~y~dkeT~~~KGeatvS~~D~~~akaai~ 134 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKR-------NKRTGKPKIK--IYTDKETGAPKGEATVSYEDPPAAKAAIE 134 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceecc-------CCCCCCcchh--ccccccccCcCCceeeeecChhhhhhhhh
Confidence 34578999999999999999999999997642 2234444422 33344688899999999999999999995
Q ss_pred -hcCceecceeeEEecCCC
Q 015974 303 -FNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~ 320 (397)
+++..|.|..|.|..+..
T Consensus 135 ~~agkdf~gn~ikvs~a~~ 153 (351)
T KOG1995|consen 135 WFAGKDFCGNTIKVSLAER 153 (351)
T ss_pred hhccccccCCCchhhhhhh
Confidence 999999999999988753
No 141
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=97.05 E-value=0.00035 Score=66.80 Aligned_cols=58 Identities=28% Similarity=0.289 Sum_probs=53.1
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....+||+|+.+.+|.+++..+|..| |.|..|.|+.|...|.++|||||.|.+.+.++
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~C----g~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~ 157 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESC----GGINRVTVPKDKFRGHPKGFAYVEFSSYELVE 157 (231)
T ss_pred CCceEEEeccccccccchhhheeecc----CCccceeeeccccCCCcceeEEEecccHhhhH
Confidence 35799999999999999999999999 89999999999998899999999999877654
No 142
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.01 E-value=0.0034 Score=52.50 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=50.6
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEE-EeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVR-IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Ir-i~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (397)
.+.|.|-+.|+.. ...|..+|++||.|.+.. +.+....-... .......+..|.|.++.+|.+||..
T Consensus 6 ~~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~-----------~~~~~~NWi~I~Y~~~~~A~rAL~~ 73 (100)
T PF05172_consen 6 ETWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPY-----------PIPSGGNWIHITYDNPLSAQRALQK 73 (100)
T ss_dssp CCEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG---------------------E-CCTTEEEEEESSHHHHHHHHTT
T ss_pred CeEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccc-----------cCCCCCCEEEEECCCHHHHHHHHHh
Confidence 4668999999884 456678999999997653 10000000000 0012235899999999999999999
Q ss_pred cCceecceeeE-EecC
Q 015974 304 NMAVIGGNHIR-LDRA 318 (397)
Q Consensus 304 ng~~l~Gr~I~-V~~a 318 (397)
||..|.|..|. |.++
T Consensus 74 NG~i~~g~~mvGV~~~ 89 (100)
T PF05172_consen 74 NGTIFSGSLMVGVKPC 89 (100)
T ss_dssp TTEEETTCEEEEEEE-
T ss_pred CCeEEcCcEEEEEEEc
Confidence 99999886544 5554
No 143
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=96.99 E-value=0.00078 Score=49.37 Aligned_cols=35 Identities=23% Similarity=0.623 Sum_probs=29.8
Q ss_pred HHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 353 IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 353 L~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
|+++|++| |.|..|.+.... +++|||+|.+.++|.
T Consensus 1 L~~~f~~f----G~V~~i~~~~~~-----~~~a~V~f~~~~~A~ 35 (56)
T PF13893_consen 1 LYKLFSKF----GEVKKIKIFKKK-----RGFAFVEFASVEDAQ 35 (56)
T ss_dssp HHHHHTTT----S-EEEEEEETTS-----TTEEEEEESSHHHHH
T ss_pred ChHHhCCc----ccEEEEEEEeCC-----CCEEEEEECCHHHHH
Confidence 68899999 999999997763 689999999999885
No 144
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=96.87 E-value=0.00098 Score=64.07 Aligned_cols=56 Identities=30% Similarity=0.405 Sum_probs=51.6
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...|+|.|||+.|+.+||+++|..| |.+..+-|.+++. |.+.|.|-|.|...++|.
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~----~~~~r~~vhy~~~-G~s~Gta~v~~~r~~DA~ 138 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEF----GELKRVAVHYDRA-GRSLGTADVSFNRRDDAE 138 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHh----ccceEEeeccCCC-CCCCccceeeecchHhHH
Confidence 4789999999999999999999999 8899999999975 999999999999987764
No 145
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=96.85 E-value=0.0011 Score=62.55 Aligned_cols=66 Identities=15% Similarity=0.294 Sum_probs=51.8
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
.+...||||.||...+|+++|+.+|+.|-....++|+- ......||++|...+.|..||
T Consensus 207 ~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~---------------------~~g~~vaf~~~~~~~~at~am 265 (284)
T KOG1457|consen 207 ARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRA---------------------RGGMPVAFADFEEIEQATDAM 265 (284)
T ss_pred chhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEec---------------------CCCcceEeecHHHHHHHHHHH
Confidence 34567899999999999999999999997665555521 112358999999999999998
Q ss_pred -HhcCcee
Q 015974 302 -AFNMAVI 308 (397)
Q Consensus 302 -~lng~~l 308 (397)
.|.|..+
T Consensus 266 ~~lqg~~~ 273 (284)
T KOG1457|consen 266 NHLQGNLL 273 (284)
T ss_pred HHhhccee
Confidence 6877655
No 146
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=96.77 E-value=0.0014 Score=68.78 Aligned_cols=56 Identities=14% Similarity=0.281 Sum_probs=52.1
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEecccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNW 395 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A 395 (397)
.+.|||.+|...+...+|++||+.| |.|....|+++.-+-..++||||++.+.++|
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKy----GKVvGAKVVTNaRsPGaRCYGfVTMSts~eA 460 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKY----GKVVGAKVVTNARSPGARCYGFVTMSTSAEA 460 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHh----cceeceeeeecCCCCCcceeEEEEecchHHH
Confidence 5789999999999999999999999 9999999999988888899999999998776
No 147
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=96.76 E-value=0.0034 Score=67.30 Aligned_cols=75 Identities=19% Similarity=0.329 Sum_probs=62.2
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCe-eEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEI-DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I-~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
.+.|-|.|+|++++.++|.+||..|-.+ .+|++++. ..|.-.|-|.|-|.+.+.|..|. .
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n------------------d~G~pTGe~mvAfes~~eAr~A~~d 928 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN------------------DDGVPTGECMVAFESQEEARRASMD 928 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeec------------------CCCCcccceeEeecCHHHHHhhhhc
Confidence 3478899999999999999999999877 45655332 23445699999999999999998 6
Q ss_pred hcCceecceeeEEec
Q 015974 303 FNMAVIGGNHIRLDR 317 (397)
Q Consensus 303 lng~~l~Gr~I~V~~ 317 (397)
|+++.|..|.|.+.+
T Consensus 929 l~~~~i~nr~V~l~i 943 (944)
T KOG4307|consen 929 LDGQKIRNRVVSLRI 943 (944)
T ss_pred cccCcccceeEEEEe
Confidence 999999999888754
No 148
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.76 E-value=0.0044 Score=52.16 Aligned_cols=53 Identities=21% Similarity=0.380 Sum_probs=34.3
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
+.|+|.+++..++-++|+.+|+.||.|.-|.+... .-.|||.|.++++|+.|+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G-----------------------~~~g~VRf~~~~~A~~a~ 54 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG-----------------------DTEGYVRFKTPEAAQKAL 54 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT------------------------SEEEEEESS---HHHHH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC-----------------------CCEEEEEECCcchHHHHH
Confidence 46899999999999999999999999888776221 137999999999999998
No 149
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=96.71 E-value=0.0023 Score=65.16 Aligned_cols=82 Identities=28% Similarity=0.320 Sum_probs=62.5
Q ss_pred CCCCcCCCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeee---cccCCCCCccchhhhhccccCCCcceEEEEec
Q 015974 216 EGFDDEGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSV---PIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (397)
Q Consensus 216 e~~d~~~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~---~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~ 292 (397)
..++.+.-.++||.+-|||.+-.-+.|.++|+.||.|..|+|+.. +....+.+. ++..-..+-+|+|+|.
T Consensus 222 p~~~~eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~-------~~~~~~tk~~AlvEye 294 (484)
T KOG1855|consen 222 PEFDEEELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPK-------KYFELQTKECALVEYE 294 (484)
T ss_pred CCccccccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCc-------cchhhhhhhhhhhhhh
Confidence 345566667899999999999999999999999999999999654 322233332 2222234568999999
Q ss_pred CHHHHHHHHHhc
Q 015974 293 SEQSTEAALAFN 304 (397)
Q Consensus 293 s~e~A~~Al~ln 304 (397)
..+.|.+|.++.
T Consensus 295 ~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 295 EVEAARKARELL 306 (484)
T ss_pred hhHHHHHHHHhh
Confidence 999999998654
No 150
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=96.68 E-value=0.0038 Score=46.04 Aligned_cols=52 Identities=27% Similarity=0.496 Sum_probs=41.0
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
+.|-|.|.+.+..+ .|..+|..||.|..+.+.. ..-++||.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~-----------------------~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPE-----------------------STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCC-----------------------CCcEEEEEECCHHHHHhhC
Confidence 56889999877664 4555999999999988721 1138999999999999985
No 151
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=96.66 E-value=0.0012 Score=62.32 Aligned_cols=71 Identities=23% Similarity=0.382 Sum_probs=60.8
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...+.++|.||+..+...+|..+|..+|.+....+ ..++|||+|...+++..|+
T Consensus 97 ~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~-------------------------~~~~~~v~Fs~~~da~ra~~ 151 (216)
T KOG0106|consen 97 RTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA-------------------------RRNFAFVEFSEQEDAKRALE 151 (216)
T ss_pred cccceeeeccchhhhhHHHHhhhhcccCCCchhhh-------------------------hccccceeehhhhhhhhcch
Confidence 34577999999999999999999999999854433 1269999999999999999
Q ss_pred HhcCceecceeeEEecC
Q 015974 302 AFNMAVIGGNHIRLDRA 318 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a 318 (397)
.|++..+.|+.|.+...
T Consensus 152 ~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 152 KLDGKKLNGRRISVEKN 168 (216)
T ss_pred hccchhhcCceeeeccc
Confidence 69999999999999443
No 152
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.42 E-value=0.0032 Score=60.37 Aligned_cols=80 Identities=18% Similarity=0.326 Sum_probs=58.2
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCc----ceEEEEecCHHHHHH
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADS----VHAYIVFKSEQSTEA 299 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~sk----G~AFV~F~s~e~A~~ 299 (397)
....||+++||+.+...-|+++|+.||.|-.|-|-.- .++. ...+...|.+. --|+|+|.+...|..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE--~~s~-------~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~ 143 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPE--DDSK-------RAARKRKGGNYKKLYSEGWVEFISKRVAKR 143 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecch--hhHH-------HHHHhhcCCCccccchhHHHHHHHHHHHHH
Confidence 4578999999999999999999999999988877322 1110 01111222222 346799999999987
Q ss_pred HH-HhcCceeccee
Q 015974 300 AL-AFNMAVIGGNH 312 (397)
Q Consensus 300 Al-~lng~~l~Gr~ 312 (397)
+. .||+..|+|+.
T Consensus 144 iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 144 IAELLNNTPIGGKK 157 (278)
T ss_pred HHHHhCCCccCCCC
Confidence 65 69999998875
No 153
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.37 E-value=0.013 Score=58.41 Aligned_cols=78 Identities=15% Similarity=0.252 Sum_probs=62.0
Q ss_pred CCccCEEEEecCCC----CCc-------HHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEE
Q 015974 222 GKLLRTIFVGNLPL----KVK-------KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIV 290 (397)
Q Consensus 222 ~~~~rtVFVgNLp~----~~T-------ee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~ 290 (397)
.+..+||.|.||=. ..+ +++|++-..+||.|.+|.|.- .. ..|.+-|.
T Consensus 262 ~r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d------~h---------------PdGvvtV~ 320 (382)
T KOG1548|consen 262 ARADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYD------RH---------------PDGVVTVS 320 (382)
T ss_pred ccCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEec------cC---------------CCceeEEE
Confidence 45679999999821 223 467778899999999987722 11 23899999
Q ss_pred ecCHHHHHHHH-HhcCceecceeeEEecCCC
Q 015974 291 FKSEQSTEAAL-AFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 291 F~s~e~A~~Al-~lng~~l~Gr~I~V~~a~~ 320 (397)
|.+.+.|..|| .|+|..|.||.|......-
T Consensus 321 f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG 351 (382)
T KOG1548|consen 321 FRNNEEADQCIQTMDGRWFDGRQLTASIWDG 351 (382)
T ss_pred eCChHHHHHHHHHhcCeeecceEEEEEEeCC
Confidence 99999999999 5999999999999888753
No 154
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=96.26 E-value=0.0044 Score=52.19 Aligned_cols=50 Identities=24% Similarity=0.211 Sum_probs=32.2
Q ss_pred cceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 337 ~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+.|+|.+++..++.++|+++|+.| |.|.+|.+.+... -|||.|.+.++|+
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~----g~V~yVD~~~G~~------~g~VRf~~~~~A~ 51 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQF----GEVAYVDFSRGDT------EGYVRFKTPEAAQ 51 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS------EEEEE--TT-S------EEEEEESS---HH
T ss_pred eEEEEecCCCCcCHHHHHHHHHhc----CCcceEEecCCCC------EEEEEECCcchHH
Confidence 468899999999999999999999 8999999876643 7999999998875
No 155
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=96.22 E-value=0.0034 Score=59.04 Aligned_cols=56 Identities=25% Similarity=0.382 Sum_probs=48.6
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEecccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNW 395 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A 395 (397)
+..++|||+||...++++-|.++|-+- |.|..|.|+.+.+ +..+ ||||.|.+.-+.
T Consensus 7 e~drtl~v~n~~~~v~eelL~Elfiqa----GPV~kv~ip~~~d-~~~k-Fa~v~f~~E~sv 62 (267)
T KOG4454|consen 7 EMDRTLLVQNMYSGVSEELLSELFIQA----GPVYKVGIPSGQD-QEQK-FAYVFFPNENSV 62 (267)
T ss_pred chhhHHHHHhhhhhhhHHHHHHHhhcc----CceEEEeCCCCcc-CCCc-eeeeecccccch
Confidence 345899999999999999999999997 8999999998876 6666 999999886543
No 156
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.16 E-value=0.013 Score=61.00 Aligned_cols=78 Identities=23% Similarity=0.329 Sum_probs=58.9
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhc-ccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs-~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
...+|||||+||--+|.++|..+|. -||.|.-+-|=+|+ .-+. .+|-|-|.|.+..+-.+||
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~--k~KY---------------PkGaGRVtFsnqqsYi~AI 430 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP--KLKY---------------PKGAGRVTFSNQQAYIKAI 430 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc--ccCC---------------CCCcceeeecccHHHHHHH
Confidence 3579999999999999999999999 69999888874442 2233 3489999999999999998
Q ss_pred H-----hcCceecceeeEEecC
Q 015974 302 A-----FNMAVIGGNHIRLDRA 318 (397)
Q Consensus 302 ~-----lng~~l~Gr~I~V~~a 318 (397)
. ++...+. ++|.|+..
T Consensus 431 sarFvql~h~d~~-KRVEIkPY 451 (520)
T KOG0129|consen 431 SARFVQLDHTDID-KRVEIKPY 451 (520)
T ss_pred hhheEEEeccccc-eeeeecce
Confidence 4 3333332 35555554
No 157
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.75 E-value=0.0085 Score=59.77 Aligned_cols=77 Identities=16% Similarity=0.197 Sum_probs=58.3
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCe--eEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEI--DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I--~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...+|||||-|.+|.++|.+.....|.- .++.+.. +...|.|+|||+|...+..++.+-+.
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFE-----------------NR~NGQSKG~AL~~~~SdAa~Kq~Me 142 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFE-----------------NRTNGQSKGYALLVLNSDAAVKQTME 142 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhh-----------------cccCCcccceEEEEecchHHHHHHHH
Confidence 4679999999999999999999887742 2233211 11347899999999999999988885
Q ss_pred -hcCceecceeeEEecC
Q 015974 303 -FNMAVIGGNHIRLDRA 318 (397)
Q Consensus 303 -lng~~l~Gr~I~V~~a 318 (397)
|....|.|..-.|..+
T Consensus 143 iLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 143 ILPTKTIHGQSPTVLSY 159 (498)
T ss_pred hcccceecCCCCeeecc
Confidence 7777888877666544
No 158
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=95.50 E-value=0.011 Score=63.77 Aligned_cols=58 Identities=19% Similarity=0.351 Sum_probs=49.7
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCC---CCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP---HMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~---~tg~~kGfAFV~F~s~e~A~ 396 (397)
.++.|||+||++.+++..|...|..| |.|.+|+|+... ...+.+.+|||.|.+..+|+
T Consensus 173 ~TTNlyv~Nlnpsv~E~~ll~tfGrf----gPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~e 233 (877)
T KOG0151|consen 173 QTTNLYVGNLNPSVDENFLLRTFGRF----GPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAE 233 (877)
T ss_pred cccceeeecCCccccHHHHHHHhccc----CcccceeeecccchhhhccccccceeeehhhhhHH
Confidence 46889999999999999999999999 899999987754 33466779999999988764
No 159
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.48 E-value=0.042 Score=48.87 Aligned_cols=73 Identities=22% Similarity=0.344 Sum_probs=52.3
Q ss_pred CccCEEEEecCCC-----CCcH----HHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecC
Q 015974 223 KLLRTIFVGNLPL-----KVKK----KTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (397)
Q Consensus 223 ~~~rtVFVgNLp~-----~~Te----e~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s 293 (397)
....||.|.=+.+ ..-. .+|.+.|..||.|.=||+.. +.-+|+|.+
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~-------------------------~~mwVTF~d 79 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG-------------------------DTMWVTFRD 79 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET-------------------------TCEEEEESS
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC-------------------------CeEEEEECc
Confidence 3456777776651 1222 36778899999887776622 478999999
Q ss_pred HHHHHHHHHhcCceecceeeEEecCCC
Q 015974 294 EQSTEAALAFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 294 ~e~A~~Al~lng~~l~Gr~I~V~~a~~ 320 (397)
..+|-+|+.++|..++|+.|.|..-.+
T Consensus 80 g~sALaals~dg~~v~g~~l~i~LKtp 106 (146)
T PF08952_consen 80 GQSALAALSLDGIQVNGRTLKIRLKTP 106 (146)
T ss_dssp CHHHHHHHHGCCSEETTEEEEEEE---
T ss_pred cHHHHHHHccCCcEECCEEEEEEeCCc
Confidence 999999999999999999999988654
No 160
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.39 E-value=0.0083 Score=62.97 Aligned_cols=55 Identities=22% Similarity=0.309 Sum_probs=47.4
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|+|-|||..++.++|+.+|+.| |+|..|+.-+ ..+|.+||+|-+.-+|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~y----Geir~ir~t~-----~~~~~~~v~FyDvR~A~ 126 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAY----GEIREIRETP-----NKRGIVFVEFYDVRDAE 126 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhh----cchhhhhccc-----ccCceEEEEEeehHhHH
Confidence 3457899999999999999999999999 8999987644 46789999999987764
No 161
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=95.36 E-value=0.028 Score=59.23 Aligned_cols=75 Identities=19% Similarity=0.208 Sum_probs=56.5
Q ss_pred cCEEEEecCCCCC--c----HHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHH
Q 015974 225 LRTIFVGNLPLKV--K----KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (397)
Q Consensus 225 ~rtVFVgNLp~~~--T----ee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~ 298 (397)
...|+|-|+|.-- . ..-|..+|+++|+|..+-++-+. .|..+||.|++|.+..+|+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e------------------~ggtkG~lf~E~~~~~~A~ 119 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDE------------------EGGTKGYLFVEYASMRDAK 119 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCc------------------cCCeeeEEEEEecChhhHH
Confidence 4679999998642 2 23466899999999888774432 2346799999999999999
Q ss_pred HHH-HhcCceecc-eeeEEec
Q 015974 299 AAL-AFNMAVIGG-NHIRLDR 317 (397)
Q Consensus 299 ~Al-~lng~~l~G-r~I~V~~ 317 (397)
.|+ .|||..|+- +...|..
T Consensus 120 ~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 120 KAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred HHHHhcccceecccceEEeeh
Confidence 999 699998854 4455543
No 162
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.26 E-value=0.022 Score=62.84 Aligned_cols=76 Identities=30% Similarity=0.422 Sum_probs=63.9
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...+.+||++|++++....|...|..||.|..|.+... .-||||.|.+...+++|+
T Consensus 453 t~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-----------------------q~yayi~yes~~~aq~a~~ 509 (975)
T KOG0112|consen 453 TPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-----------------------QPYAYIQYESPPAAQAATH 509 (975)
T ss_pred ccceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-----------------------CcceeeecccCccchhhHH
Confidence 44577999999999999999999999999998877321 139999999999999999
Q ss_pred HhcCceecc--eeeEEecCCCC
Q 015974 302 AFNMAVIGG--NHIRLDRACPP 321 (397)
Q Consensus 302 ~lng~~l~G--r~I~V~~a~~~ 321 (397)
.+-|..|+| +.|+|.++..+
T Consensus 510 ~~rgap~G~P~~r~rvdla~~~ 531 (975)
T KOG0112|consen 510 DMRGAPLGGPPRRLRVDLASPP 531 (975)
T ss_pred HHhcCcCCCCCcccccccccCC
Confidence 588888865 66899888654
No 163
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.20 E-value=0.047 Score=53.52 Aligned_cols=65 Identities=20% Similarity=0.265 Sum_probs=51.8
Q ss_pred HHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-HhcCceecceeeEEec
Q 015974 239 KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDR 317 (397)
Q Consensus 239 ee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~l~Gr~I~V~~ 317 (397)
++++.+.+.+||.|..|.|..++....... --.||+|...++|.+|+ .|||..|+||.+..++
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~dea----------------vRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEA----------------VRIFVEFERVESAIKAVVDLNGRYFGGRVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchh----------------heeeeeeccHHHHHHHHHhcCCceecceeeehee
Confidence 456778899999999999877753222211 25899999999999998 7999999999988877
Q ss_pred CC
Q 015974 318 AC 319 (397)
Q Consensus 318 a~ 319 (397)
..
T Consensus 364 yn 365 (378)
T KOG1996|consen 364 YN 365 (378)
T ss_pred cc
Confidence 54
No 164
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=95.01 E-value=0.099 Score=42.30 Aligned_cols=52 Identities=15% Similarity=0.300 Sum_probs=39.3
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
.+..||+ .|..+...+|.++|+.||.|. |.++.+ .-|||.....+.|..|+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d------------------------TSAfV~l~~r~~~~~v~~ 60 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND------------------------TSAFVALHNRDQAKVVMN 60 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT------------------------TEEEEEECCCHHHHHHHH
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC------------------------CcEEEEeecHHHHHHHHH
Confidence 4556666 999999999999999999976 666443 369999999999998873
No 165
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=93.83 E-value=0.067 Score=49.15 Aligned_cols=73 Identities=14% Similarity=0.098 Sum_probs=42.8
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcc-cCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIK-FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~-~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
...|.|++||+.+|+++++..++. ++....-....... ...+ +. .....-|||.|.+.+++...+ .
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~--~~~~---------~~-~~~~SRaYi~F~~~~~~~~F~~~ 74 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKY--GKKS---------FK-PPTYSRAYINFKNPEDLLEFRDR 74 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEE--S-SS---------ST-TS--EEEEEEESSCHHHHHHHHH
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCC--CCcc---------CC-CCcceEEEEEeCCHHHHHHHHHh
Confidence 457999999999999999998886 66542111111000 0000 00 011357999999999988777 6
Q ss_pred hcCceec
Q 015974 303 FNMAVIG 309 (397)
Q Consensus 303 lng~~l~ 309 (397)
++|..|.
T Consensus 75 ~~g~~F~ 81 (176)
T PF03467_consen 75 FDGHVFV 81 (176)
T ss_dssp CTTEEEE
T ss_pred cCCcEEE
Confidence 9998874
No 166
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=93.79 E-value=0.042 Score=58.28 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=59.0
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhc-ccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs-~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
...++.|||.||-.-.|.-+|+.++. .+|.|++.+| +. -+.+|||.|.+.+.|.+-
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~Wm--Dk---------------------IKShCyV~yss~eEA~at 497 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWM--DK---------------------IKSHCYVSYSSVEEAAAT 497 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHH--HH---------------------hhcceeEecccHHHHHHH
Confidence 34578999999999999999999999 5777777643 11 124899999999999877
Q ss_pred H-HhcCcee---cceeeEEecC
Q 015974 301 L-AFNMAVI---GGNHIRLDRA 318 (397)
Q Consensus 301 l-~lng~~l---~Gr~I~V~~a 318 (397)
. +|||..| +++.|.+.+.
T Consensus 498 r~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 498 REALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred HHHHhccccCCCCCceeEeeec
Confidence 7 6999877 5677877775
No 167
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=93.11 E-value=0.092 Score=50.63 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=64.6
Q ss_pred HHHH-HhcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCC
Q 015974 298 EAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP 376 (397)
Q Consensus 298 ~~Al-~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~ 376 (397)
..|- +|++....|+.++|.++.. ..|||.||..-++.+.|.+-|+.| |.|....++.|.
T Consensus 8 e~ak~eLd~~~~~~~~lr~rfa~~----------------a~l~V~nl~~~~sndll~~~f~~f----g~~e~av~~vD~ 67 (275)
T KOG0115|consen 8 EIAKRELDGRFPKGRSLRVRFAMH----------------AELYVVNLMQGASNDLLEQAFRRF----GPIERAVAKVDD 67 (275)
T ss_pred HHHHHhcCCCCCCCCceEEEeecc----------------ceEEEEecchhhhhHHHHHhhhhc----Cccchheeeecc
Confidence 3444 5899999999999999863 579999999999999999999999 888887777774
Q ss_pred CCCCCccEEEEEecccccc
Q 015974 377 HMRVGKGIAYVLFKTRDNW 395 (397)
Q Consensus 377 ~tg~~kGfAFV~F~s~e~A 395 (397)
.+.+.+-++|.|...-.|
T Consensus 68 -r~k~t~eg~v~~~~k~~a 85 (275)
T KOG0115|consen 68 -RGKPTREGIVEFAKKPNA 85 (275)
T ss_pred -cccccccchhhhhcchhH
Confidence 488899999999876544
No 168
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=92.76 E-value=0.052 Score=52.25 Aligned_cols=61 Identities=26% Similarity=0.379 Sum_probs=47.4
Q ss_pred HHHHHHhc-ccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-HhcCceecceeeEEec
Q 015974 240 KTLIKEFI-KFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDR 317 (397)
Q Consensus 240 e~L~~~Fs-~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~l~Gr~I~V~~ 317 (397)
++|...|. +||.|+++.+...- .. --.|-+||.|...++|++|+ .||+..+.|++|...+
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl----~~--------------hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~ 144 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL----GD--------------HLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAEL 144 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc----ch--------------hhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeee
Confidence 56666666 89999988653211 00 12488999999999999999 6999999999999877
Q ss_pred C
Q 015974 318 A 318 (397)
Q Consensus 318 a 318 (397)
+
T Consensus 145 ~ 145 (260)
T KOG2202|consen 145 S 145 (260)
T ss_pred c
Confidence 6
No 169
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=92.40 E-value=0.16 Score=37.41 Aligned_cols=49 Identities=20% Similarity=0.367 Sum_probs=37.6
Q ss_pred cceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 337 ~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+.|-|.|.+.... +.+..+|..| |.|..+.+.. ...+.||.|.+..+|+
T Consensus 2 ~wI~V~Gf~~~~~-~~vl~~F~~f----GeI~~~~~~~------~~~~~~l~y~~~~~ae 50 (53)
T PF14605_consen 2 TWISVSGFPPDLA-EEVLEHFASF----GEIVDIYVPE------STNWMYLKYKSRKDAE 50 (53)
T ss_pred cEEEEEeECchHH-HHHHHHHHhc----CCEEEEEcCC------CCcEEEEEECCHHHHH
Confidence 4677888887655 4466688889 9999998862 2448999999998875
No 170
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=92.01 E-value=0.69 Score=35.34 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=41.5
Q ss_pred cCEEEEecCCCCCcHHHHHHHhccc----CCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKF----GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~----G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
...|+|+|+ -.++.++|..+|..| ++ ..|.++-+. -|-|.|.+.+.|.+|
T Consensus 5 peavhirGv-d~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt------------------------ScNvvf~d~~~A~~A 58 (62)
T PF10309_consen 5 PEAVHIRGV-DELSTDDIKAYFSEYFDEEGP-FRIEWIDDT------------------------SCNVVFKDEETAARA 58 (62)
T ss_pred eceEEEEcC-CCCCHHHHHHHHHHhcccCCC-ceEEEecCC------------------------cEEEEECCHHHHHHH
Confidence 346999999 458889999999998 54 457775542 589999999999999
Q ss_pred H
Q 015974 301 L 301 (397)
Q Consensus 301 l 301 (397)
|
T Consensus 59 L 59 (62)
T PF10309_consen 59 L 59 (62)
T ss_pred H
Confidence 8
No 171
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=91.82 E-value=0.08 Score=54.87 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=61.2
Q ss_pred CccCEEEEecCCCCC-cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKV-KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~-Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
.+.+.|-+.-.|+.. |-++|..+|.+||.|..|.+..- .-.|.|+|.+...|-.|.
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~-----------------------~~~a~vTF~t~aeag~a~ 426 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS-----------------------SLHAVVTFKTRAEAGEAY 426 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc-----------------------hhhheeeeeccccccchh
Confidence 345666666667765 67899999999999999987221 126999999999998888
Q ss_pred HhcCceecceeeEEecCCC
Q 015974 302 AFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~ 320 (397)
..++..|++|.|.|.|..+
T Consensus 427 ~s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 427 ASHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred ccccceecCceeEEEEecC
Confidence 8999999999999999865
No 172
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=91.35 E-value=0.15 Score=51.28 Aligned_cols=58 Identities=17% Similarity=0.212 Sum_probs=50.2
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeE--------EEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--------AVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~--------~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...+|||.+||..++..+|.++|.+| |.|. -|.|.++..|+.++|-|.|.|.+...|+
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qc----g~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~ak 130 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQC----GVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAK 130 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhc----ceeccCCCCCCcchhccccccccCcCCceeeeecChhhhh
Confidence 45799999999999999999999999 5443 3668888899999999999999987764
No 173
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=90.77 E-value=0.54 Score=41.85 Aligned_cols=72 Identities=25% Similarity=0.250 Sum_probs=52.9
Q ss_pred ccCEEEEecCCCCC----cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHH
Q 015974 224 LLRTIFVGNLPLKV----KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (397)
Q Consensus 224 ~~rtVFVgNLp~~~----Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~ 299 (397)
.-.||.|+=|...+ +...|...++.||+|.+|.+. | +-.|.|+|.+..+|..
T Consensus 85 PMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-------G-----------------rqsavVvF~d~~SAC~ 140 (166)
T PF15023_consen 85 PMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-------G-----------------RQSAVVVFKDITSACK 140 (166)
T ss_pred CceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-------C-----------------CceEEEEehhhHHHHH
Confidence 35778887665554 344566677889999999872 2 2369999999999999
Q ss_pred HHHhcCceecceeeEEecCC
Q 015974 300 ALAFNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 300 Al~lng~~l~Gr~I~V~~a~ 319 (397)
|+.--+....|..+.+.|-.
T Consensus 141 Av~Af~s~~pgtm~qCsWqq 160 (166)
T PF15023_consen 141 AVSAFQSRAPGTMFQCSWQQ 160 (166)
T ss_pred HHHhhcCCCCCceEEeeccc
Confidence 99544446678888887754
No 174
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=90.75 E-value=0.32 Score=50.03 Aligned_cols=58 Identities=22% Similarity=0.368 Sum_probs=47.0
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeC---CCCC--CC--------ccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRH---PHMR--VG--------KGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd---~~tg--~~--------kGfAFV~F~s~e~A~ 396 (397)
++++|.+-|||.+-.-+.|..+|+.| |.|..|||... +..+ .+ +-+|+|+|...+.|.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~----G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~ 300 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTV----GSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAAR 300 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcc----cceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHH
Confidence 57999999999999999999999999 99999999876 3222 22 347888988877663
No 175
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=90.64 E-value=0.087 Score=52.78 Aligned_cols=57 Identities=16% Similarity=0.287 Sum_probs=46.8
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDN 394 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~ 394 (397)
..++|||||-|-+|++||.......|. ..+..+.+.-+..+|.++|||.|...+..+
T Consensus 80 k~~~YvGNL~W~TTD~DL~~A~~S~G~--~~~~dmKFFENR~NGQSKG~AL~~~~SdAa 136 (498)
T KOG4849|consen 80 KYCCYVGNLLWYTTDADLLKALQSTGL--AQFADMKFFENRTNGQSKGYALLVLNSDAA 136 (498)
T ss_pred eEEEEecceeEEeccHHHHHHHHhhhH--HHHhhhhhhhcccCCcccceEEEEecchHH
Confidence 478999999999999999988876633 356777788888889999999999876543
No 176
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=90.05 E-value=0.16 Score=50.74 Aligned_cols=82 Identities=16% Similarity=0.373 Sum_probs=59.9
Q ss_pred cCEEEEecCCCCCcHHHHH---HHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 225 LRTIFVGNLPLKVKKKTLI---KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~---~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
.+-+||-+|+.....+.+. .+|.+||.|..|.+..++. ... . . ....-+||+|...++|..||
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S--~~s-~----------~-~~~~s~yITy~~~eda~rci 142 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPS--SSS-S----------S-GGTCSVYITYEEEEDADRCI 142 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcc--ccc-C----------C-CCCCcccccccchHhhhhHH
Confidence 4569999999887655554 5899999999998855431 000 0 0 11234899999999999999
Q ss_pred -HhcCceecceeeEEecCCC
Q 015974 302 -AFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~ 320 (397)
..+|..+.|+.|.......
T Consensus 143 ~~v~g~~~dg~~lka~~gtt 162 (327)
T KOG2068|consen 143 DDVDGFVDDGRALKASLGTT 162 (327)
T ss_pred HHhhhHHhhhhhhHHhhCCC
Confidence 6999999999877766654
No 177
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=89.56 E-value=1.1 Score=44.26 Aligned_cols=71 Identities=18% Similarity=0.192 Sum_probs=53.2
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhc
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (397)
..-|-|-++|+..+- -|..+|++||.|+.+... + +--+-+|.|.+.-+|++||..|
T Consensus 197 D~WVTVfGFppg~~s-~vL~~F~~cG~Vvkhv~~----------~-------------ngNwMhirYssr~~A~KALskn 252 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVS-IVLNLFSRCGEVVKHVTP----------S-------------NGNWMHIRYSSRTHAQKALSKN 252 (350)
T ss_pred cceEEEeccCccchh-HHHHHHHhhCeeeeeecC----------C-------------CCceEEEEecchhHHHHhhhhc
Confidence 345667788877553 566789999999876431 1 1138999999999999999999
Q ss_pred Cceeccee-eEEecCC
Q 015974 305 MAVIGGNH-IRLDRAC 319 (397)
Q Consensus 305 g~~l~Gr~-I~V~~a~ 319 (397)
|..|+|.. |-|..+.
T Consensus 253 g~ii~g~vmiGVkpCt 268 (350)
T KOG4285|consen 253 GTIIDGDVMIGVKPCT 268 (350)
T ss_pred CeeeccceEEeeeecC
Confidence 99998865 5566654
No 178
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=89.20 E-value=0.34 Score=49.33 Aligned_cols=55 Identities=18% Similarity=0.295 Sum_probs=45.6
Q ss_pred cceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCC---CCCCccEEEEEecccccc
Q 015974 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH---MRVGKGIAYVLFKTRDNW 395 (397)
Q Consensus 337 ~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~---tg~~kGfAFV~F~s~e~A 395 (397)
..|.|.||.+++|.++++.||.-. |.|..++|+.... .......|||-|.+...+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~l----GkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv 65 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNL----GKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSV 65 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhc----cccccccccCCCCCccCcceeeeEEEeccCCcce
Confidence 489999999999999999999988 9999999877442 234556899999987654
No 179
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=87.66 E-value=0.63 Score=45.02 Aligned_cols=59 Identities=17% Similarity=0.260 Sum_probs=47.6
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
..|||.||+..+.-+.|...|+.||+|....+..+- .++..|-++|.|...-.+..|+.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~------------------r~k~t~eg~v~~~~k~~a~~a~r 90 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD------------------RGKPTREGIVEFAKKPNARKAAR 90 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc------------------cccccccchhhhhcchhHHHHHH
Confidence 559999999999999999999999999765443331 23445788999999999988883
No 180
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=87.11 E-value=0.71 Score=37.55 Aligned_cols=47 Identities=23% Similarity=0.269 Sum_probs=30.5
Q ss_pred cceecCCCCccCcHHH----HHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 337 KTVFVGNLPFDVKDEE----IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 337 ~tLfVgNLp~~vteed----L~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..|||.|||.+.+... |++++..|| |.|..|. .+-|+|.|.+.+.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCG---GkVl~v~----------~~tAilrF~~~~~A~ 53 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCG---GKVLSVS----------GGTAILRFPNQEFAE 53 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT-----EEE------------TT-EEEEESSHHHHH
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccC---CEEEEEe----------CCEEEEEeCCHHHHH
Confidence 3689999999887654 567777886 7888762 357999999988874
No 181
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=86.90 E-value=0.44 Score=38.96 Aligned_cols=70 Identities=19% Similarity=0.142 Sum_probs=44.9
Q ss_pred EEEEecCHHHHHHHHHhcCc--eecceeeEEecC--CCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhc
Q 015974 287 AYIVFKSEQSTEAALAFNMA--VIGGNHIRLDRA--CPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFC 358 (397)
Q Consensus 287 AFV~F~s~e~A~~Al~lng~--~l~Gr~I~V~~a--~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~ 358 (397)
|+|+|..+.-|+..+.+..+ .+++..+.|... ....-.... .......++|.|.|||....+++|++...
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~q--v~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQ--VFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEE--EEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 78999999999998864433 455555555443 211100000 01123468999999999999999988653
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=84.74 E-value=1.5 Score=35.59 Aligned_cols=46 Identities=28% Similarity=0.462 Sum_probs=32.5
Q ss_pred cceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEecccccc
Q 015974 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNW 395 (397)
Q Consensus 337 ~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A 395 (397)
...||+ +|..+...||.++|+.| |.|. |..+-|. -|||...+.+.|
T Consensus 10 HVFhlt-FPkeWK~~DI~qlFspf----G~I~-VsWi~dT-------SAfV~l~~r~~~ 55 (87)
T PF08675_consen 10 HVFHLT-FPKEWKTSDIYQLFSPF----GQIY-VSWINDT-------SAFVALHNRDQA 55 (87)
T ss_dssp CEEEEE---TT--HHHHHHHCCCC----CCEE-EEEECTT-------EEEEEECCCHHH
T ss_pred eEEEEe-CchHhhhhhHHHHhccC----CcEE-EEEEcCC-------cEEEEeecHHHH
Confidence 455566 99999999999999999 6664 6666663 599999887765
No 183
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=80.49 E-value=1.5 Score=46.75 Aligned_cols=55 Identities=13% Similarity=0.116 Sum_probs=44.1
Q ss_pred cceecCCCCccC------cHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 337 KTVFVGNLPFDV------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 337 ~tLfVgNLp~~v------teedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..|+|.|+|--- -..-|..+|+.+ |.|....++.+.. |..+||.|++|.+..+|+
T Consensus 59 ~vVvv~g~PvV~~~rl~klk~vl~kvfsk~----gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~ 119 (698)
T KOG2314|consen 59 SVVVVDGAPVVGPARLEKLKKVLTKVFSKA----GKIVNMYYPIDEE-GGTKGYLFVEYASMRDAK 119 (698)
T ss_pred eEEEECCCcccChhHHHHHHHHHHHHHHhh----ccccceeeccCcc-CCeeeEEEEEecChhhHH
Confidence 578888887522 133456889999 9999999999987 559999999999998885
No 184
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=79.88 E-value=4 Score=37.82 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=42.1
Q ss_pred cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hhc--CceecceeeE
Q 015974 238 KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN--MAVIGGNHIR 314 (397)
Q Consensus 238 Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln--g~~l~Gr~I~ 314 (397)
....|+.+|..|+.+..+.++. +-+-..|.|.+.+.|..|. .|+ +..+.|..++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~-----------------------sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~ 64 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLK-----------------------SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLR 64 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEET-----------------------TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-E
T ss_pred hHHHHHHHHHhcCCceEEEEcC-----------------------CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceE
Confidence 4578999999999887765522 2246899999999999998 577 8999999999
Q ss_pred EecCCC
Q 015974 315 LDRACP 320 (397)
Q Consensus 315 V~~a~~ 320 (397)
|.++..
T Consensus 65 ~yf~~~ 70 (184)
T PF04847_consen 65 VYFGQP 70 (184)
T ss_dssp EE----
T ss_pred EEEccc
Confidence 988743
No 185
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=79.55 E-value=16 Score=31.04 Aligned_cols=67 Identities=18% Similarity=0.211 Sum_probs=45.6
Q ss_pred cCEEEEecCCCCCcHHHHHHHhccc-CCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~-G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
...+.+...|+-++-+.|..+.+.+ ..|..++|+++. .| ++-.+++.|.+..+|.... .
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~-----~p--------------nrymVLikF~~~~~Ad~Fy~~ 73 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG-----TP--------------NRYMVLIKFRDQESADEFYEE 73 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC-----CC--------------ceEEEEEEECCHHHHHHHHHH
Confidence 3444555555566666776666654 456777886642 11 3457999999999999987 6
Q ss_pred hcCceecc
Q 015974 303 FNMAVIGG 310 (397)
Q Consensus 303 lng~~l~G 310 (397)
+||..|..
T Consensus 74 fNGk~Fns 81 (110)
T PF07576_consen 74 FNGKPFNS 81 (110)
T ss_pred hCCCccCC
Confidence 99998754
No 186
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=78.55 E-value=1.3 Score=40.57 Aligned_cols=56 Identities=18% Similarity=0.221 Sum_probs=33.4
Q ss_pred ccceecCCCCccCcHHHHHHHhcc-CCCCCCCe---EEEEEeeCC--CCCCCccEEEEEecccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCG-LNDLESSV---EAVRVIRHP--HMRVGKGIAYVLFKTRDNW 395 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~-f~~~~G~I---~~Vri~rd~--~tg~~kGfAFV~F~s~e~A 395 (397)
...|.|++||+.+|++++.+.++. + |.. .++.-.... .....-.-|||.|.+.+++
T Consensus 7 ~~KvVIR~LPP~LteeeF~~~i~~~l----~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~ 68 (176)
T PF03467_consen 7 GTKVVIRRLPPNLTEEEFWEQISPWL----PDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDL 68 (176)
T ss_dssp --EEEEEEE-TTS-HHHHCCCCSS------SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHH
T ss_pred CceEEEeCCCCCCCHHHHHHHhhhhc----ccccceEEEecCCCCccCCCCcceEEEEEeCCHHHH
Confidence 468999999999999999997776 4 333 333311221 1122345799999998764
No 187
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=76.64 E-value=13 Score=38.97 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=55.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcc-cCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIK-FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~-~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
...|+|-.+|..+|-.+|..|+.. .-.|..|+|+++.. | ++-.++|.|.+..+|.... .
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~-----p--------------nrymvLIkFr~q~da~~Fy~e 134 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGM-----P--------------NRYMVLIKFRDQADADTFYEE 134 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCC-----C--------------ceEEEEEEeccchhHHHHHHH
Confidence 688999999999999999999886 45678899987542 2 2247899999999999988 6
Q ss_pred hcCceecc
Q 015974 303 FNMAVIGG 310 (397)
Q Consensus 303 lng~~l~G 310 (397)
+||..|..
T Consensus 135 fNGk~Fn~ 142 (493)
T KOG0804|consen 135 FNGKQFNS 142 (493)
T ss_pred cCCCcCCC
Confidence 99998754
No 188
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.23 E-value=5.3 Score=41.10 Aligned_cols=66 Identities=20% Similarity=0.260 Sum_probs=52.3
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCe-eEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEI-DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I-~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
..+.|=|.++|.....++|...|..||.- -.|.|+-+ -+||-+|.+...|..||.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd------------------------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD------------------------THALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec------------------------ceeEEeecchHHHHHHhh
Confidence 56889999999999999999999998754 34666443 279999999999999998
Q ss_pred hcCceecceee
Q 015974 303 FNMAVIGGNHI 313 (397)
Q Consensus 303 lng~~l~Gr~I 313 (397)
+...++.-|+|
T Consensus 446 ~kh~~lKiRpL 456 (528)
T KOG4483|consen 446 LKHDWLKIRPL 456 (528)
T ss_pred ccCceEEeeeh
Confidence 85555555554
No 189
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=73.89 E-value=3.1 Score=40.41 Aligned_cols=39 Identities=13% Similarity=0.221 Sum_probs=34.3
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCC
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM 378 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~t 378 (397)
...||+++||+.+...-|+++|+.| |.|-.|.|-....+
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~y----GeVGRvylqpE~~s 112 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQY----GEVGRVYLQPEDDS 112 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhc----cccceEEecchhhH
Confidence 3689999999999999999999999 99999988776544
No 190
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=72.37 E-value=5.8 Score=34.45 Aligned_cols=83 Identities=17% Similarity=0.106 Sum_probs=59.2
Q ss_pred ceEEEEecCHHHHHHHHHhcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCcc-CcHHHHHHHhccCCCC
Q 015974 285 VHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDL 363 (397)
Q Consensus 285 G~AFV~F~s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~-vteedL~~~F~~f~~~ 363 (397)
|+..+.|.+.+++..++......+.|..|.+..-.+...... ........-|.|.|||.. .+++-|..+-+.+
T Consensus 56 ~~fl~~F~~~~d~~~vl~~~p~~~~~~~~~l~~W~~~~~~~~---~~~~~~~vWVri~glP~~~~~~~~~~~i~~~i--- 129 (153)
T PF14111_consen 56 NLFLFQFESEEDRQRVLKGGPWNFNGHFLILQRWSPDFNPSE---VKFEHIPVWVRIYGLPLHLWSEEILKAIGSKI--- 129 (153)
T ss_pred CeEEEEEEeccceeEEEecccccccccchhhhhhcccccccc---cceeccchhhhhccCCHHHhhhHHHHHHHHhc---
Confidence 689999999999999988777788888888877754221110 000112345778899987 5778888888888
Q ss_pred CCCeEEEEEee
Q 015974 364 ESSVEAVRVIR 374 (397)
Q Consensus 364 ~G~I~~Vri~r 374 (397)
|.+..+....
T Consensus 130 -G~~i~vD~~t 139 (153)
T PF14111_consen 130 -GEPIEVDENT 139 (153)
T ss_pred -CCeEEEEcCC
Confidence 8888876533
No 191
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=71.03 E-value=11 Score=32.14 Aligned_cols=57 Identities=12% Similarity=0.230 Sum_probs=43.2
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEecccccccC
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWIE 397 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~e 397 (397)
...+.+...|..++.++|..+.+.+. ..|..++|++|.. .++-.+.+.|.+..+|.+
T Consensus 13 ~~~~~l~vp~~~~~~d~l~~f~~~~~---~~i~~~riird~~--pnrymVLikF~~~~~Ad~ 69 (110)
T PF07576_consen 13 STLCCLAVPPYMTPSDFLLFFGAPFR---EDIEHIRIIRDGT--PNRYMVLIKFRDQESADE 69 (110)
T ss_pred ceEEEEEeCcccccHHHHHHhhhccc---ccEEEEEEeeCCC--CceEEEEEEECCHHHHHH
Confidence 45556666777777788887777763 5799999999843 467789999999988853
No 192
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=70.41 E-value=1.3 Score=47.42 Aligned_cols=56 Identities=14% Similarity=0.117 Sum_probs=44.3
Q ss_pred ccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 332 ~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++.|||.||-.-.|.-+|+.++..-+ |.|+.. .+| .-+..|||.|.+.++|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtg---g~Vee~--WmD----kIKShCyV~yss~eEA~ 495 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTG---GNVEEF--WMD----KIKSHCYVSYSSVEEAA 495 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhcc---CchHHH--HHH----HhhcceeEecccHHHHH
Confidence 355688999999999999999999998541 677765 444 34668999999998875
No 193
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=68.63 E-value=9 Score=41.03 Aligned_cols=68 Identities=15% Similarity=0.202 Sum_probs=51.4
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcc--cCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIK--FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~--~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
...|.|.|+-||..+-.++|..+|.. |-.+.+|.+-.. --=||+|.+..+|+.|
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N------------------------~nWyITfesd~DAQqA 228 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHN------------------------DNWYITFESDTDAQQA 228 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeec------------------------CceEEEeecchhHHHH
Confidence 34688999999999999999999995 788888877221 1359999999999999
Q ss_pred HH-hc--CceecceeeE
Q 015974 301 LA-FN--MAVIGGNHIR 314 (397)
Q Consensus 301 l~-ln--g~~l~Gr~I~ 314 (397)
.. |. -..|.|++|.
T Consensus 229 ykylreevk~fqgKpIm 245 (684)
T KOG2591|consen 229 YKYLREEVKTFQGKPIM 245 (684)
T ss_pred HHHHHHHHHhhcCcchh
Confidence 73 22 2245666553
No 194
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=67.92 E-value=38 Score=33.68 Aligned_cols=163 Identities=13% Similarity=0.186 Sum_probs=92.6
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
-..|.|.+.||...++--.+...|.+||+|++|.++.... .+. .+...........+-|-+.+.+-...
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~----~~~------d~~~~d~~~~SilLSFlsr~~CLdFYN 82 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSND----KPS------DDYNDDKNNQSILLSFLSREICLDFYN 82 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCC----ccc------ccccccccceEEEEeeechHHHHHHHH
Confidence 3468899999999999999999999999999999955321 111 01122334467888998887754332
Q ss_pred ----Hhc--CceecceeeEEecCCCCccccC--CCC---------------CCccccccceecCCCCccCcHHHH-HHHh
Q 015974 302 ----AFN--MAVIGGNHIRLDRACPPRKKLK--GED---------------APLYDIKKTVFVGNLPFDVKDEEI-YQLF 357 (397)
Q Consensus 302 ----~ln--g~~l~Gr~I~V~~a~~~~k~~~--~~~---------------~~~~~~~~tLfVgNLp~~vteedL-~~~F 357 (397)
.|+ .+.+....|.+.+..-...... .+. ......++.|.|.-- ..+..+++ ...+
T Consensus 83 nvLQrLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL 161 (309)
T PF10567_consen 83 NVLQRLSEFKTKLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKL 161 (309)
T ss_pred HHHHHHHHHHHhcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhh
Confidence 121 2234555566555431110000 000 011334566766533 23323332 2222
Q ss_pred ccCCCCCC----CeEEEEEeeCC--CCCCCccEEEEEecccccccC
Q 015974 358 CGLNDLES----SVEAVRVIRHP--HMRVGKGIAYVLFKTRDNWIE 397 (397)
Q Consensus 358 ~~f~~~~G----~I~~Vri~rd~--~tg~~kGfAFV~F~s~e~A~e 397 (397)
+|-.-.+ .+++|.|+.-. ...-+..||.++|-+...|+|
T Consensus 162 -~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiE 206 (309)
T PF10567_consen 162 -PFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIE 206 (309)
T ss_pred -hhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHH
Confidence 1100002 47788877654 234577899999999888865
No 195
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=67.50 E-value=4 Score=45.55 Aligned_cols=72 Identities=19% Similarity=0.150 Sum_probs=57.4
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hhc
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (397)
.+.++-|.+...|---|..+|++||.|.+++.+++- -.|.|.|.+.+.|-.|+ +++
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-----------------------N~alvs~~s~~sai~a~dAl~ 355 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-----------------------NMALVSFSSVESAILALDALQ 355 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheecccc-----------------------cchhhhhHHHHHHHHhhhhhc
Confidence 445566667778889999999999999998875542 37999999999999999 688
Q ss_pred Ccee--cceeeEEecCCC
Q 015974 305 MAVI--GGNHIRLDRACP 320 (397)
Q Consensus 305 g~~l--~Gr~I~V~~a~~ 320 (397)
|..+ -|-+.+|..+..
T Consensus 356 gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 356 GKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred CCcccccCCceeEEeccc
Confidence 8854 577778877754
No 196
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=66.80 E-value=3.2 Score=45.04 Aligned_cols=109 Identities=15% Similarity=0.100 Sum_probs=73.0
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
...+|||+|+...+..+-+......||.|-++.. + -|+|..|..+.....|+ .
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr--~------------------------~fgf~~f~~~~~~~ra~r~ 92 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKR--D------------------------KFGFCEFLKHIGDLRASRL 92 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhh--h------------------------hhcccchhhHHHHHHHHHH
Confidence 4678999999999999999999999998865432 1 18999999999998888 4
Q ss_pred hcCceecceeeEEecCC----CCccc------cCCCCCCccccccceecCCCCccCcHHHHHHHhcc
Q 015974 303 FNMAVIGGNHIRLDRAC----PPRKK------LKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCG 359 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~----~~~k~------~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~ 359 (397)
++...++|..+.+..-. .+.+. ......+ ....+-++|+|+|...........|.-
T Consensus 93 ~t~~~~~~~kl~~~~d~q~~~n~~k~~~~~~~~~~~f~p-~~srr~e~i~~k~~~l~~~~~~~~~~i 158 (668)
T KOG2253|consen 93 LTELNIDDQKLIENVDEQTIENADKEKSIANKESHKFVP-SSSRRQESIQNKPLSLDEQIHKKSLQI 158 (668)
T ss_pred hcccCCCcchhhccchhhhhcCccccccchhhhhcccCC-chhHHHHHhhccccchhHHHHHHHHhc
Confidence 66666777766554421 00000 0000011 111467788888887777666666643
No 197
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=65.48 E-value=36 Score=26.26 Aligned_cols=54 Identities=20% Similarity=0.251 Sum_probs=42.2
Q ss_pred CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-HhcCceecceeeE
Q 015974 236 KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIR 314 (397)
Q Consensus 236 ~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~l~Gr~I~ 314 (397)
.++-++|+..+..|+. ..|+. +. .| =||.|.+..+|++|. ..+|..+.+..|.
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~----------------------tG-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~ 64 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DR----------------------TG-FYIVFNDSKEAERCFRAEDGTLFFTYRMQ 64 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cC----------------------CE-EEEEECChHHHHHHHHhcCCCEEEEEEEE
Confidence 5788999999999985 23433 21 14 589999999999999 6899998888776
Q ss_pred E
Q 015974 315 L 315 (397)
Q Consensus 315 V 315 (397)
+
T Consensus 65 M 65 (66)
T PF11767_consen 65 M 65 (66)
T ss_pred e
Confidence 5
No 198
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=55.66 E-value=12 Score=36.99 Aligned_cols=49 Identities=18% Similarity=0.166 Sum_probs=37.0
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCe-eEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHH
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEI-DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQ 295 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I-~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e 295 (397)
...-|||+|||.++...+|...+.+.|-+ .+|.| ..+.|-||+.|.+..
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw-----------------------kg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW-----------------------KGHFGKCFLHFGNRK 378 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCceeEee-----------------------ecCCcceeEecCCcc
Confidence 34559999999999999999999987754 34444 124578999998754
No 199
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=54.52 E-value=12 Score=37.86 Aligned_cols=56 Identities=21% Similarity=0.371 Sum_probs=40.5
Q ss_pred ccceecCCCCccCcHHHH------HHHhccCCCCCCCeEEEEEeeCCCC-CCCcc--EEEEEecccccc
Q 015974 336 KKTVFVGNLPFDVKDEEI------YQLFCGLNDLESSVEAVRVIRHPHM-RVGKG--IAYVLFKTRDNW 395 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL------~~~F~~f~~~~G~I~~Vri~rd~~t-g~~kG--fAFV~F~s~e~A 395 (397)
..-+||-+||+.+..+++ .++|.+| |.|..|-|-+.... +.-.+ -.||+|.+.++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQy----GkI~KIvvNkkt~s~nst~~h~gvYITy~~kedA 178 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQY----GKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDA 178 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhc----cceeEEEecccccccccccccceEEEEecchHHH
Confidence 467899999998877763 4789999 99998877665411 11122 249999998877
No 200
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.90 E-value=31 Score=37.26 Aligned_cols=92 Identities=23% Similarity=0.223 Sum_probs=59.1
Q ss_pred CccCEEEEecCCCC-CcHHHHHHHhccc----CCeeEEEEeeecccCCCCCcc------ch-------------------
Q 015974 223 KLLRTIFVGNLPLK-VKKKTLIKEFIKF----GEIDSVRIRSVPIIDTKIPRK------GA------------------- 272 (397)
Q Consensus 223 ~~~rtVFVgNLp~~-~Tee~L~~~Fs~~----G~I~~Iri~~~~~~~~~~prk------~a------------------- 272 (397)
...+.|-|-||.|+ +...+|.-+|+.| |.|.+|.|..-.+ |..|. |+
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeF---GkeRM~eEeV~GP~~el~~~~e~~~~s~sD~e 248 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEF---GKERMKEEEVHGPPKELFKPVEEYKESESDDE 248 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhh---hHHHhhhhcccCChhhhccccccCcccccchh
Confidence 34678999999998 7888999999976 6888888732211 11110 00
Q ss_pred ----h----hhhccccCCCcceEEEEecCHHHHHHHH-HhcCceecceeeEEec
Q 015974 273 ----I----LQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDR 317 (397)
Q Consensus 273 ----~----i~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~l~Gr~I~V~~ 317 (397)
+ |..++-.....-||.|+|.+...|.+.. .++|..|....+.+.+
T Consensus 249 e~~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DL 302 (650)
T KOG2318|consen 249 EEEDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDL 302 (650)
T ss_pred hhhhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeee
Confidence 0 0011111112348999999999998877 6999998655544443
No 201
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=47.08 E-value=28 Score=29.02 Aligned_cols=56 Identities=13% Similarity=0.156 Sum_probs=34.0
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEE-EeeCC------CCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVR-VIRHP------HMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vr-i~rd~------~tg~~kGfAFV~F~s~e~A~ 396 (397)
...|.|-+.|.. .-..|.+.|+.| |.|.... +.++. ........-.|+|.++.+|+
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~----G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~ 68 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSF----GTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQ 68 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCC----S-EECEEGGG----------E-CCTTEEEEEESSHHHHH
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhc----ceEEEeecccccccccccccCCCCCCEEEEECCCHHHHH
Confidence 356888889987 556688889999 8888764 11110 00123458899999988875
No 202
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=46.13 E-value=48 Score=35.74 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=40.8
Q ss_pred ccceecCCCCccCcHHHHHHHhcc--CCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCG--LNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~--f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.|.|+-||..+-.++++.||.. | -.+.+|.+.... + =||+|.+..+|+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~enc----Pk~iscefa~N~--n-----WyITfesd~DAQ 226 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENC----PKVISCEFAHND--N-----WYITFESDTDAQ 226 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCC----CCceeeeeeecC--c-----eEEEeecchhHH
Confidence 578899999999999999999964 4 467888876552 2 499999999986
No 203
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=45.50 E-value=16 Score=36.11 Aligned_cols=34 Identities=38% Similarity=0.533 Sum_probs=27.4
Q ss_pred cCEEEEecCCCCC------------cHHHHHHHhcccCCeeEEEEe
Q 015974 225 LRTIFVGNLPLKV------------KKKTLIKEFIKFGEIDSVRIR 258 (397)
Q Consensus 225 ~rtVFVgNLp~~~------------Tee~L~~~Fs~~G~I~~Iri~ 258 (397)
..|||+.+||-.+ ++.-|+..|..||.|..|.|+
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCc
Confidence 4679999998643 567899999999998877763
No 204
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=43.65 E-value=29 Score=26.83 Aligned_cols=57 Identities=21% Similarity=0.355 Sum_probs=31.8
Q ss_pred CCcHHHHHHHhcccCCe-----eEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-HhcCceec
Q 015974 236 KVKKKTLIKEFIKFGEI-----DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIG 309 (397)
Q Consensus 236 ~~Tee~L~~~Fs~~G~I-----~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~l~ 309 (397)
.++..+|..++...+.| -.|+|.. -|+||+-... .+..++ .|++..+.
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~~-------------------------~~S~vev~~~-~a~~v~~~l~~~~~~ 65 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIFD-------------------------NFSFVEVPEE-VAEKVLEALNGKKIK 65 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE-S-------------------------S-EEEEE-TT--HHHHHHHHTT--SS
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEee-------------------------eEEEEEECHH-HHHHHHHHhcCCCCC
Confidence 47888899888876444 4455521 3899988866 455666 69999999
Q ss_pred ceeeEEecC
Q 015974 310 GNHIRLDRA 318 (397)
Q Consensus 310 Gr~I~V~~a 318 (397)
|+.|.|..|
T Consensus 66 gk~v~ve~A 74 (74)
T PF03880_consen 66 GKKVRVERA 74 (74)
T ss_dssp S----EEE-
T ss_pred CeeEEEEEC
Confidence 999998764
No 205
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=43.19 E-value=26 Score=36.69 Aligned_cols=56 Identities=7% Similarity=0.242 Sum_probs=47.5
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+..|+|-.+|..++-.||..|...|. -.|..++|+||.. -++-...|.|.+.++|.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~---~~I~~irivRd~~--pnrymvLIkFr~q~da~ 129 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFI---KQISDIRIVRDGM--PNRYMVLIKFRDQADAD 129 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHh---hhhheeEEeecCC--CceEEEEEEeccchhHH
Confidence 68899999999999999999998773 5799999999742 35667899999998885
No 206
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=40.14 E-value=43 Score=33.27 Aligned_cols=51 Identities=14% Similarity=0.192 Sum_probs=37.0
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEecccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNW 395 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A 395 (397)
..-|+|+|||.++.-.||+..+...+ ....++.+ ..+.|-||++|-+...|
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~---~~pm~isw------kg~~~k~flh~~~~~~~ 380 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRE---CTPMSISW------KGHFGKCFLHFGNRKGV 380 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcC---CCceeEee------ecCCcceeEecCCccCC
Confidence 45699999999999999998887651 12233322 23678899999887654
No 207
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=39.62 E-value=48 Score=25.34 Aligned_cols=51 Identities=16% Similarity=0.199 Sum_probs=37.2
Q ss_pred cceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 337 ~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..|+|.|+.. ++-++|..+|..|-.. .....|..+-|. -|-|.|.+.+.|.
T Consensus 6 eavhirGvd~-lsT~dI~~y~~~y~~~-~~~~~IEWIdDt-------ScNvvf~d~~~A~ 56 (62)
T PF10309_consen 6 EAVHIRGVDE-LSTDDIKAYFSEYFDE-EGPFRIEWIDDT-------SCNVVFKDEETAA 56 (62)
T ss_pred ceEEEEcCCC-CCHHHHHHHHHHhccc-CCCceEEEecCC-------cEEEEECCHHHHH
Confidence 5799999965 8888999999887111 235567777774 3778998887764
No 208
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=37.81 E-value=49 Score=32.72 Aligned_cols=52 Identities=13% Similarity=0.246 Sum_probs=35.9
Q ss_pred ccccceecCCCCccC------------cHHHHHHHhccCCCCCCCeEEEEEeeCC-----CCCCCccEEEEEe
Q 015974 334 DIKKTVFVGNLPFDV------------KDEEIYQLFCGLNDLESSVEAVRVIRHP-----HMRVGKGIAYVLF 389 (397)
Q Consensus 334 ~~~~tLfVgNLp~~v------------teedL~~~F~~f~~~~G~I~~Vri~rd~-----~tg~~kGfAFV~F 389 (397)
....+||+.+||-.| +++-|+..|..| |.|..|.|+.-. -+|...|+-|-.|
T Consensus 147 erpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eaf----g~ir~vdipicdplr~~mn~kisgiq~~gf 215 (445)
T KOG2891|consen 147 ERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAF----GEIRNVDIPICDPLREEMNGKISGIQFHGF 215 (445)
T ss_pred CCCCceeecCCcceeeeecccccccCChHHHHHHHHHHh----ccceecCCcccchhHHHhcCccccceeecc
Confidence 345789999888443 577899999999 999999886532 2355545444443
No 209
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=31.89 E-value=65 Score=34.33 Aligned_cols=59 Identities=17% Similarity=0.180 Sum_probs=45.8
Q ss_pred EEEecCCCCCc---HHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcce-EEEEecCHHHHHHHHHh
Q 015974 228 IFVGNLPLKVK---KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH-AYIVFKSEQSTEAALAF 303 (397)
Q Consensus 228 VFVgNLp~~~T---ee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~-AFV~F~s~e~A~~Al~l 303 (397)
=+||||+.-.. ...+..+=.+||+|-.+++ |. -.|.-.+.+.|+.|+.-
T Consensus 35 PiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~l---------------------------G~~~~Vviss~~~akE~l~~ 87 (489)
T KOG0156|consen 35 PIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRL---------------------------GSVPVVVISSYEAAKEVLVK 87 (489)
T ss_pred CccccHHHcCCCchhHHHHHHHHHhCCeEEEEe---------------------------cCceEEEECCHHHHHHHHHh
Confidence 46888876433 3455555568999998887 33 48889999999999998
Q ss_pred cCceecceee
Q 015974 304 NMAVIGGNHI 313 (397)
Q Consensus 304 ng~~l~Gr~I 313 (397)
++..+.+|+.
T Consensus 88 ~d~~fa~Rp~ 97 (489)
T KOG0156|consen 88 QDLEFADRPD 97 (489)
T ss_pred CCccccCCCC
Confidence 9999999986
No 210
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=29.40 E-value=49 Score=28.30 Aligned_cols=58 Identities=16% Similarity=0.283 Sum_probs=31.0
Q ss_pred EEEEecCCCC---------CcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHH-
Q 015974 227 TIFVGNLPLK---------VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQS- 296 (397)
Q Consensus 227 tVFVgNLp~~---------~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~- 296 (397)
++.|-|+|.. .+-+.|...|+.|.++. ++.+..+ ..++|++.|.|...-.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~-------------------~gh~g~aiv~F~~~w~G 69 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK-------------------QGHTGFAIVEFNKDWSG 69 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET-------------------TEEEEEEEEE--SSHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC-------------------CCCcEEEEEEECCChHH
Confidence 4667777553 35688999999999875 5543332 2366999999987654
Q ss_pred HHHHHHhc
Q 015974 297 TEAALAFN 304 (397)
Q Consensus 297 A~~Al~ln 304 (397)
-..|+.|.
T Consensus 70 f~~A~~l~ 77 (116)
T PF03468_consen 70 FKNAMRLE 77 (116)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44566544
No 211
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=27.34 E-value=81 Score=32.45 Aligned_cols=72 Identities=22% Similarity=0.310 Sum_probs=46.9
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
...|-|.+||+..|+.+|.+....|- ..+.+......+.+. ...-.+.|||-|..++++.... .+
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~--~~v~~~~F~~a~~s~------------~~~~ysrayinFk~~~dv~ef~~~f 72 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFP--EHVNWEFFAKADESL------------RNHKYSRAYINFKNPEDVEEFRRRF 72 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCc--cccchheeccccccc------------hhhhhhhhhhccccHHHHHHHHhhC
Confidence 46699999999999999998888743 223332211001110 0112578999999999977666 48
Q ss_pred cCceecc
Q 015974 304 NMAVIGG 310 (397)
Q Consensus 304 ng~~l~G 310 (397)
+|++|..
T Consensus 73 ~g~ifld 79 (376)
T KOG1295|consen 73 DGYIFLD 79 (376)
T ss_pred CceEEec
Confidence 8887643
No 212
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=25.97 E-value=45 Score=33.64 Aligned_cols=55 Identities=20% Similarity=0.402 Sum_probs=39.3
Q ss_pred ccceecCCCCccCcHHHHH---HHhccCCCCCCCeEEEEEeeCCC----CCCCccEEEEEecccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIY---QLFCGLNDLESSVEAVRVIRHPH----MRVGKGIAYVLFKTRDNW 395 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~---~~F~~f~~~~G~I~~Vri~rd~~----tg~~kGfAFV~F~s~e~A 395 (397)
..-+||-+|+..+..+.+. ..|.+| |.|..|.+-+++. .+.+- -+||+|...++|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqy----gki~ki~~~~~~S~~s~~~~~~-s~yITy~~~eda 138 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQY----GKINKIVKNKDPSSSSSSGGTC-SVYITYEEEEDA 138 (327)
T ss_pred hhhhhhhCCCccccchhhhhCccccccc----ccceEEeecCCcccccCCCCCC-cccccccchHhh
Confidence 3567888999888766664 566666 8999999988762 12222 389999887665
No 213
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=24.92 E-value=32 Score=37.62 Aligned_cols=49 Identities=20% Similarity=0.260 Sum_probs=39.3
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDN 394 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~ 394 (397)
.++..++||+|+...+..+-+..+...| |.|.++..+. |||..|..+..
T Consensus 37 ~~~~~~vfv~~~~~~~s~~~~~~il~~~----g~v~s~kr~~---------fgf~~f~~~~~ 85 (668)
T KOG2253|consen 37 LPPRDTVFVGNISYLVSQEFWKSILAKS----GFVPSWKRDK---------FGFCEFLKHIG 85 (668)
T ss_pred CCCCceeEecchhhhhhHHHHHHHHhhC----Ccchhhhhhh---------hcccchhhHHH
Confidence 3456899999999999999999999998 8787764422 88999877643
No 214
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=24.37 E-value=60 Score=31.38 Aligned_cols=36 Identities=17% Similarity=0.304 Sum_probs=30.1
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEE
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRI 257 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri 257 (397)
.....++|+-|||...|++.|..+.+.+|.+..+.+
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y 72 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLY 72 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhheec
Confidence 344678999999999999999999999997665544
No 215
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=22.81 E-value=62 Score=34.25 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=37.0
Q ss_pred cceecCCCCccC-cHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEecccccc
Q 015974 337 KTVFVGNLPFDV-KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNW 395 (397)
Q Consensus 337 ~tLfVgNLp~~v-teedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A 395 (397)
+.|-+.-.|+.+ +..+|..+|.+| |.|..|.+-.. .--|.|+|.+..+|
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~f----G~i~n~qv~~~------~~~a~vTF~t~aea 422 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQF----GEIENIQVDYS------SLHAVVTFKTRAEA 422 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhc----CccccccccCc------hhhheeeeeccccc
Confidence 455555556555 678999999999 99999987444 33689999988776
Done!