Query 015974
Match_columns 397
No_of_seqs 360 out of 2104
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:45:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015974.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015974hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l3k_A Heterogeneous nuclear r 100.0 4.4E-29 1.5E-33 224.9 16.8 151 222-396 10-160 (196)
2 3md3_A Nuclear and cytoplasmic 100.0 2.5E-28 8.7E-33 213.2 15.9 142 226-396 1-143 (166)
3 1fxl_A Paraneoplastic encephal 100.0 4.7E-28 1.6E-32 211.7 16.9 142 225-396 2-144 (167)
4 1b7f_A Protein (SXL-lethal pro 100.0 4.9E-28 1.7E-32 212.5 16.3 143 224-396 2-145 (168)
5 2cjk_A Nuclear polyadenylated 100.0 1.4E-28 4.9E-33 216.1 10.3 142 224-396 2-143 (167)
6 4f02_A Polyadenylate-binding p 100.0 8.2E-28 2.8E-32 222.3 14.5 143 224-396 14-157 (213)
7 3nmr_A Cugbp ELAV-like family 99.9 4.3E-27 1.5E-31 207.5 14.8 145 224-396 2-150 (175)
8 2qfj_A FBP-interacting repress 99.9 1.8E-27 6E-32 217.5 12.0 151 225-396 28-181 (216)
9 2g4b_A Splicing factor U2AF 65 99.9 9.8E-27 3.3E-31 205.3 16.2 137 224-396 3-150 (172)
10 2yh0_A Splicing factor U2AF 65 99.9 2.5E-26 8.7E-31 207.1 16.8 146 224-396 3-170 (198)
11 3tyt_A Heterogeneous nuclear r 99.9 8.6E-26 2.9E-30 209.0 14.5 145 224-396 3-179 (205)
12 2ghp_A U4/U6 snRNA-associated 99.9 9.4E-26 3.2E-30 216.6 13.2 135 222-396 38-173 (292)
13 3sde_A Paraspeckle component 1 99.9 2.3E-25 7.8E-30 212.2 15.5 132 222-396 19-151 (261)
14 1fje_B Nucleolin RBD12, protei 99.9 5.8E-26 2E-30 201.5 10.4 141 222-396 10-150 (175)
15 3smz_A Protein raver-1, ribonu 99.9 1.3E-24 4.3E-29 208.0 16.1 144 225-396 95-240 (284)
16 3smz_A Protein raver-1, ribonu 99.9 1.6E-24 5.5E-29 207.2 16.2 129 225-396 22-151 (284)
17 2ghp_A U4/U6 snRNA-associated 99.9 7.8E-25 2.7E-29 210.2 13.1 149 224-396 116-268 (292)
18 3pgw_A U1-A; protein-RNA compl 99.9 6.7E-24 2.3E-28 202.7 16.6 146 222-396 6-258 (282)
19 1qm9_A Polypyrimidine tract-bi 99.9 8.6E-24 2.9E-28 191.6 12.4 141 225-396 3-172 (198)
20 2adc_A Polypyrimidine tract-bi 99.9 2.4E-23 8.2E-28 194.3 15.6 143 223-396 32-203 (229)
21 4f25_A Polyadenylate-binding p 99.8 1.1E-20 3.6E-25 158.9 10.6 108 225-352 5-113 (115)
22 4fxv_A ELAV-like protein 1; RN 99.7 4.1E-18 1.4E-22 139.7 10.4 80 224-320 18-98 (99)
23 2lxi_A RNA-binding protein 10; 99.7 9.8E-18 3.3E-22 135.2 6.9 81 225-322 1-84 (91)
24 3lqv_A PRE-mRNA branch site pr 99.7 2.6E-17 8.8E-22 137.2 9.2 101 224-361 7-108 (115)
25 2hvz_A Splicing factor, argini 99.7 4.3E-17 1.5E-21 132.8 9.9 98 226-345 1-100 (101)
26 3s8s_A Histone-lysine N-methyl 99.7 6.6E-17 2.3E-21 135.2 11.0 82 223-321 4-86 (110)
27 3s7r_A Heterogeneous nuclear r 99.7 8.9E-17 3E-21 127.3 10.5 80 222-318 8-87 (87)
28 2dgs_A DAZ-associated protein 99.7 1.5E-16 5.1E-21 129.1 11.8 83 223-322 8-90 (99)
29 3md1_A Nuclear and cytoplasmic 99.7 1.2E-16 4E-21 125.2 10.7 79 226-321 2-81 (83)
30 1s79_A Lupus LA protein; RRM, 99.7 7.2E-17 2.4E-21 133.5 8.6 78 224-319 10-87 (103)
31 3bs9_A Nucleolysin TIA-1 isofo 99.7 1.5E-16 5.1E-21 125.6 10.1 80 224-320 5-85 (87)
32 1whw_A Hypothetical protein ri 99.7 2.5E-16 8.5E-21 127.6 11.6 84 223-323 6-90 (99)
33 2fy1_A RNA-binding motif prote 99.7 2.5E-16 8.6E-21 132.5 12.0 84 223-324 5-89 (116)
34 3ucg_A Polyadenylate-binding p 99.7 1.5E-16 5.2E-21 126.1 10.0 80 225-321 6-85 (89)
35 3mdf_A Peptidyl-prolyl CIS-tra 99.7 1.8E-16 6.3E-21 124.6 10.2 79 223-318 5-84 (85)
36 2cq0_A Eukaryotic translation 99.7 2.6E-16 9E-21 128.6 11.3 84 222-322 12-96 (103)
37 2dnz_A Probable RNA-binding pr 99.7 3.5E-16 1.2E-20 125.7 11.8 82 224-322 4-86 (95)
38 3p5t_L Cleavage and polyadenyl 99.7 4.1E-17 1.4E-21 130.6 6.1 79 226-321 2-83 (90)
39 2dgo_A Cytotoxic granule-assoc 99.7 5.8E-16 2E-20 129.0 13.2 84 222-322 12-96 (115)
40 3ns6_A Eukaryotic translation 99.7 7.4E-17 2.5E-21 132.0 7.6 82 223-321 4-93 (100)
41 1x5u_A Splicing factor 3B subu 99.7 3.4E-16 1.2E-20 128.1 11.5 85 222-323 12-97 (105)
42 2lkz_A RNA-binding protein 5; 99.7 1E-16 3.4E-21 131.0 8.2 80 224-320 8-94 (95)
43 2cpf_A RNA binding motif prote 99.7 3E-16 1E-20 127.0 10.9 85 224-322 4-89 (98)
44 2x1f_A MRNA 3'-END-processing 99.7 2.7E-16 9.3E-21 127.0 10.6 81 225-322 2-83 (96)
45 2cqb_A Peptidyl-prolyl CIS-tra 99.7 2.6E-16 9E-21 128.2 10.6 84 223-323 10-94 (102)
46 1wi8_A EIF-4B, eukaryotic tran 99.7 4E-16 1.4E-20 127.8 11.5 83 223-323 13-96 (104)
47 2cqc_A Arginine/serine-rich sp 99.7 3.9E-16 1.3E-20 125.2 11.2 81 222-319 12-93 (95)
48 2dng_A Eukaryotic translation 99.7 5.3E-16 1.8E-20 126.9 12.0 82 223-322 13-94 (103)
49 1x5t_A Splicing factor 3B subu 99.7 3.1E-16 1.1E-20 126.2 10.1 82 224-322 4-87 (96)
50 2dnm_A SRP46 splicing factor; 99.7 3.4E-16 1.2E-20 127.9 10.3 83 223-322 11-94 (103)
51 2mss_A Protein (musashi1); RNA 99.7 1E-16 3.6E-21 123.4 6.8 75 227-318 1-75 (75)
52 1x4h_A RNA-binding protein 28; 99.7 5.4E-16 1.8E-20 128.0 11.6 83 223-322 13-102 (111)
53 2kn4_A Immunoglobulin G-bindin 99.7 1.5E-16 5E-21 139.7 8.6 108 282-396 11-126 (158)
54 2rs2_A Musashi-1, RNA-binding 99.7 4.4E-16 1.5E-20 129.4 11.1 84 222-322 22-105 (109)
55 2cqi_A Nucleolysin TIAR; RNA r 99.7 8.4E-16 2.9E-20 125.5 12.5 82 222-322 12-94 (103)
56 1x5s_A Cold-inducible RNA-bind 99.7 3.4E-16 1.1E-20 127.5 10.0 84 222-322 9-93 (102)
57 4a8x_A RNA-binding protein wit 99.7 3.5E-16 1.2E-20 123.6 9.7 82 224-321 3-85 (88)
58 2e5h_A Zinc finger CCHC-type a 99.7 5.5E-16 1.9E-20 124.3 11.0 80 222-318 13-93 (94)
59 2cpz_A CUG triplet repeat RNA- 99.7 5.4E-16 1.9E-20 129.3 11.4 83 223-322 23-106 (115)
60 2do4_A Squamous cell carcinoma 99.7 5.8E-16 2E-20 125.8 11.2 82 223-322 15-97 (100)
61 1p27_B RNA-binding protein 8A; 99.6 3.4E-16 1.2E-20 128.4 9.3 80 224-320 22-102 (106)
62 2cq3_A RNA-binding protein 9; 99.6 1.6E-15 5.5E-20 123.8 13.3 82 222-322 12-94 (103)
63 2div_A TRNA selenocysteine ass 99.6 4.6E-16 1.6E-20 126.1 9.9 83 222-321 6-94 (99)
64 2cph_A RNA binding motif prote 99.6 7.8E-16 2.7E-20 126.3 11.3 85 222-322 12-98 (107)
65 2dh8_A DAZ-associated protein 99.6 3.9E-16 1.3E-20 128.0 9.4 85 222-323 13-97 (105)
66 2dgp_A Bruno-like 4, RNA bindi 99.6 6.4E-16 2.2E-20 126.7 10.4 85 222-323 10-98 (106)
67 2cpe_A RNA-binding protein EWS 99.6 8.3E-16 2.8E-20 127.6 11.0 84 222-322 12-104 (113)
68 2ywk_A Putative RNA-binding pr 99.6 7.8E-16 2.7E-20 123.6 10.4 79 223-319 14-93 (95)
69 2dnh_A Bruno-like 5, RNA bindi 99.6 1E-15 3.5E-20 125.3 11.3 82 223-322 13-98 (105)
70 1oo0_B CG8781-PA, drosophila Y 99.6 6.1E-16 2.1E-20 127.8 9.9 82 223-321 24-106 (110)
71 2cqg_A TDP-43, TAR DNA-binding 99.6 1.8E-15 6.2E-20 123.5 12.7 82 223-322 13-94 (103)
72 1x4b_A Heterogeneous nuclear r 99.6 9.5E-16 3.3E-20 128.0 11.2 83 224-323 26-108 (116)
73 2jrs_A RNA-binding protein 39; 99.6 6.7E-16 2.3E-20 128.3 10.0 83 222-321 23-106 (108)
74 2cqd_A RNA-binding region cont 99.6 1.7E-15 5.7E-20 126.5 12.3 82 222-321 14-96 (116)
75 2la6_A RNA-binding protein FUS 99.6 6.9E-16 2.4E-20 125.3 9.6 80 222-318 10-98 (99)
76 2cpy_A RNA-binding protein 12; 99.6 5.3E-16 1.8E-20 129.7 9.1 82 222-321 12-94 (114)
77 2dgv_A HnRNP M, heterogeneous 99.6 8.9E-16 3.1E-20 122.5 10.0 81 223-322 6-87 (92)
78 2dgx_A KIAA0430 protein; RRM d 99.6 1.7E-15 5.9E-20 122.7 11.5 80 223-322 7-91 (96)
79 2cq4_A RNA binding motif prote 99.6 6.5E-16 2.2E-20 128.6 9.0 81 224-321 24-104 (114)
80 1x4e_A RNA binding motif, sing 99.6 3.8E-16 1.3E-20 123.1 7.2 79 224-319 4-83 (85)
81 1x4a_A Splicing factor, argini 99.6 2.5E-15 8.4E-20 124.1 12.4 81 223-323 20-101 (109)
82 2jwn_A Embryonic polyadenylate 99.6 1.3E-15 4.4E-20 128.5 10.9 80 225-321 36-115 (124)
83 2khc_A Testis-specific RNP-typ 99.6 9.5E-16 3.2E-20 128.2 9.7 80 222-318 37-117 (118)
84 2dhg_A TRNA selenocysteine ass 99.6 1.6E-15 5.4E-20 124.0 10.7 82 223-322 7-91 (104)
85 1p1t_A Cleavage stimulation fa 99.6 6.3E-16 2.2E-20 126.2 8.2 81 224-321 7-88 (104)
86 1wg5_A Heterogeneous nuclear r 99.6 1.6E-15 5.6E-20 124.7 10.7 81 223-321 13-94 (104)
87 2do0_A HnRNP M, heterogeneous 99.6 4E-15 1.4E-19 123.5 12.9 82 222-321 12-94 (114)
88 1iqt_A AUF1, heterogeneous nuc 99.6 2.6E-16 9.1E-21 120.9 5.1 75 227-318 1-75 (75)
89 3n9u_C Cleavage and polyadenyl 99.6 1.2E-15 4.2E-20 135.2 10.2 80 224-320 54-136 (156)
90 2cpi_A CCR4-NOT transcription 99.6 1.6E-15 5.4E-20 126.2 10.2 85 224-322 14-102 (111)
91 2d9p_A Polyadenylate-binding p 99.6 2.4E-15 8.2E-20 122.8 11.1 82 222-322 12-94 (103)
92 2dgw_A Probable RNA-binding pr 99.6 2.4E-15 8.1E-20 120.1 10.8 80 223-321 8-87 (91)
93 2nlw_A Eukaryotic translation 99.6 1.6E-15 5.5E-20 125.0 10.1 80 223-321 13-100 (105)
94 1wez_A HnRNP H', FTP-3, hetero 99.6 7.6E-16 2.6E-20 126.8 8.0 82 222-322 12-93 (102)
95 1u6f_A Tcubp1, RNA-binding pro 99.6 2.2E-15 7.5E-20 129.6 11.3 85 221-322 38-123 (139)
96 2cqp_A RNA-binding protein 12; 99.6 1E-15 3.5E-20 123.8 8.5 82 223-321 13-95 (98)
97 2kxn_B Transformer-2 protein h 99.6 1.5E-15 5E-20 130.4 9.9 83 222-321 43-126 (129)
98 2db1_A Heterogeneous nuclear r 99.6 9.4E-16 3.2E-20 129.3 8.5 80 223-320 15-97 (118)
99 2ek1_A RNA-binding protein 12; 99.6 7.8E-16 2.7E-20 123.6 7.5 79 224-319 14-93 (95)
100 2m2b_A RNA-binding protein 10; 99.6 8.4E-16 2.9E-20 131.6 8.2 84 222-323 20-110 (131)
101 2j76_E EIF-4B, EIF4B, eukaryot 99.6 6.6E-16 2.3E-20 126.1 7.2 82 223-321 17-98 (100)
102 3ulh_A THO complex subunit 4; 99.6 2.5E-15 8.6E-20 123.3 10.5 79 223-319 27-106 (107)
103 2err_A Ataxin-2-binding protei 99.6 2E-15 6.8E-20 125.4 9.9 80 222-320 26-106 (109)
104 2krb_A Eukaryotic translation 99.6 9.3E-16 3.2E-20 120.2 7.2 73 225-316 1-81 (81)
105 1sjq_A Polypyrimidine tract-bi 99.6 2.2E-15 7.5E-20 125.5 9.8 78 222-322 13-93 (105)
106 1uaw_A Mouse-musashi-1; RNP-ty 99.6 5.7E-16 2E-20 119.5 5.7 75 226-318 1-76 (77)
107 2dnp_A RNA-binding protein 14; 99.6 5.9E-15 2E-19 117.7 11.7 76 222-322 6-82 (90)
108 1h2v_Z 20 kDa nuclear CAP bind 99.6 4E-15 1.4E-19 130.6 11.6 83 223-322 37-120 (156)
109 3ex7_B RNA-binding protein 8A; 99.6 2.2E-15 7.5E-20 127.4 9.5 82 223-321 20-102 (126)
110 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.6 3.4E-15 1.2E-19 127.8 10.8 81 221-318 59-140 (140)
111 2kn4_A Immunoglobulin G-bindin 99.6 3.4E-15 1.2E-19 130.9 10.9 83 223-322 68-151 (158)
112 2lmi_A GRSF-1, G-rich sequence 99.6 8.2E-16 2.8E-20 127.2 6.5 81 222-320 8-91 (107)
113 2dis_A Unnamed protein product 99.6 3.8E-15 1.3E-19 122.7 10.4 82 224-322 7-93 (109)
114 2ki2_A SS-DNA binding protein 99.6 4.5E-16 1.6E-20 123.9 4.4 78 226-321 2-80 (90)
115 2hgl_A HNRPF protein, heteroge 99.6 1.7E-15 5.8E-20 131.7 8.1 81 222-320 41-124 (136)
116 1x4d_A Matrin 3; structural ge 99.6 3.4E-15 1.2E-19 123.6 9.6 75 224-321 14-92 (102)
117 2dnn_A RNA-binding protein 12; 99.6 3.3E-15 1.1E-19 125.0 9.6 77 225-320 16-92 (109)
118 2dgt_A RNA-binding protein 30; 99.6 1.1E-14 3.6E-19 116.7 12.2 76 222-322 7-83 (92)
119 2cpd_A Apobec-1 stimulating pr 99.6 1.4E-14 4.9E-19 117.4 13.0 76 222-322 12-90 (99)
120 2dnq_A RNA-binding protein 4B; 99.6 7.1E-15 2.4E-19 117.2 11.0 76 223-323 6-82 (90)
121 2wbr_A GW182, gawky, LD47780P; 99.6 3.6E-15 1.2E-19 120.3 9.1 73 224-319 6-79 (89)
122 1fj7_A Nucleolin RBD1, protein 99.6 7.1E-16 2.4E-20 125.5 5.1 81 223-321 15-95 (101)
123 1wel_A RNA-binding protein 12; 99.6 1.1E-15 3.6E-20 129.6 6.1 81 223-320 23-103 (124)
124 2i2y_A Fusion protein consists 99.6 1.2E-15 4E-20 133.2 6.4 105 282-396 11-124 (150)
125 2fc9_A NCL protein; structure 99.6 8.2E-15 2.8E-19 119.2 11.1 80 222-322 12-92 (101)
126 2xnq_A Nuclear polyadenylated 99.6 9E-15 3.1E-19 119.0 11.2 74 222-320 19-94 (97)
127 2e5j_A Methenyltetrahydrofolat 99.6 4.7E-15 1.6E-19 120.0 9.3 77 223-321 17-94 (97)
128 2la4_A Nuclear and cytoplasmic 99.6 5.3E-15 1.8E-19 120.3 9.5 74 224-320 26-100 (101)
129 1x4g_A Nucleolysin TIAR; struc 99.6 1.2E-14 4E-19 120.2 11.4 76 224-322 24-100 (109)
130 2jvr_A Nucleolar protein 3; RN 99.6 5.5E-15 1.9E-19 124.1 9.5 79 222-321 25-105 (111)
131 2cq1_A PTB-like protein L; RRM 99.6 1.5E-14 5.2E-19 119.3 12.0 77 223-322 13-92 (101)
132 1nu4_A U1A RNA binding domain; 99.6 4.1E-15 1.4E-19 119.8 8.3 79 223-321 6-89 (97)
133 1x5o_A RNA binding motif, sing 99.6 1E-14 3.5E-19 121.2 10.9 80 223-320 23-111 (114)
134 3r27_A HnRNP L, heterogeneous 99.6 6.9E-15 2.4E-19 121.5 9.8 76 223-321 19-97 (100)
135 2kt5_A RNA and export factor-b 99.6 9.6E-15 3.3E-19 123.4 10.9 81 223-321 33-114 (124)
136 1rk8_A CG8781-PA, CG8781-PA pr 99.6 6.7E-15 2.3E-19 130.8 10.4 82 223-321 70-152 (165)
137 2lea_A Serine/arginine-rich sp 99.6 4.5E-15 1.5E-19 128.2 8.9 82 224-322 46-128 (135)
138 2ytc_A PRE-mRNA-splicing facto 99.6 9.6E-15 3.3E-19 114.8 9.9 73 223-318 10-84 (85)
139 2a3j_A U1 small nuclear ribonu 99.6 7.2E-15 2.5E-19 126.2 9.8 79 223-321 27-110 (127)
140 2cpj_A Non-POU domain-containi 99.6 1E-14 3.5E-19 118.3 10.2 77 222-321 12-89 (99)
141 1wex_A Hypothetical protein (r 99.6 1.2E-14 4.1E-19 120.5 10.6 77 223-322 13-92 (104)
142 2ad9_A Polypyrimidine tract-bi 99.6 1.3E-14 4.3E-19 123.5 10.8 77 223-322 29-108 (119)
143 1whx_A Hypothetical protein ri 99.6 4.2E-15 1.4E-19 124.0 7.6 74 224-320 9-83 (111)
144 1why_A Hypothetical protein ri 99.6 1.2E-14 4E-19 117.6 9.9 76 223-321 15-93 (97)
145 1x4c_A Splicing factor, argini 99.6 1.8E-14 6.3E-19 119.0 11.3 76 223-322 13-94 (108)
146 2dgu_A Heterogeneous nuclear r 99.6 2.6E-14 8.7E-19 116.9 11.9 75 223-322 9-84 (103)
147 2kvi_A Nuclear polyadenylated 99.6 5E-15 1.7E-19 119.8 7.5 75 223-322 8-84 (96)
148 2cpx_A Hypothetical protein FL 99.6 1.1E-14 3.8E-19 121.0 9.6 83 223-322 23-106 (115)
149 2dha_A FLJ20171 protein; RRM d 99.6 3.7E-15 1.3E-19 127.4 6.6 78 225-320 23-104 (123)
150 1fjc_A Nucleolin RBD2, protein 99.5 1.1E-14 3.6E-19 117.3 8.5 77 223-321 14-91 (96)
151 2xs2_A Deleted in azoospermia- 99.5 4.4E-15 1.5E-19 121.0 6.1 78 224-320 8-85 (102)
152 1x4f_A Matrin 3; structural ge 99.5 8.8E-15 3E-19 123.2 8.1 78 222-322 22-103 (112)
153 2cqh_A IGF-II mRNA-binding pro 99.5 1E-14 3.4E-19 116.9 8.0 76 223-322 6-84 (93)
154 1wf1_A RNA-binding protein RAL 99.5 2.4E-14 8.2E-19 118.5 10.3 74 224-322 26-101 (110)
155 2hgm_A HNRPF protein, heteroge 99.5 8.9E-15 3.1E-19 125.6 7.8 79 223-320 40-120 (126)
156 3q2s_C Cleavage and polyadenyl 99.5 8.6E-15 2.9E-19 137.5 8.3 80 224-320 67-149 (229)
157 2i2y_A Fusion protein consists 99.5 1.5E-14 5.1E-19 126.2 9.3 78 222-321 70-148 (150)
158 2jvo_A Nucleolar protein 3; nu 99.5 2.5E-14 8.6E-19 118.8 10.1 76 222-322 28-104 (108)
159 2fc8_A NCL protein; structure 99.5 3.7E-14 1.3E-18 115.3 10.8 82 222-323 12-94 (102)
160 2hzc_A Splicing factor U2AF 65 99.5 2.2E-14 7.4E-19 113.1 9.1 72 223-317 4-86 (87)
161 2lcw_A RNA-binding protein FUS 99.3 5.9E-16 2E-20 129.4 0.0 84 223-323 5-97 (116)
162 2hgn_A Heterogeneous nuclear r 99.5 3.6E-15 1.2E-19 130.1 4.6 80 223-321 44-123 (139)
163 2e5g_A U6 snRNA-specific termi 99.5 6.4E-14 2.2E-18 112.7 11.3 77 224-322 7-83 (94)
164 3d2w_A TAR DNA-binding protein 99.5 4.1E-14 1.4E-18 113.5 9.4 75 222-321 8-84 (89)
165 3egn_A RNA-binding protein 40; 99.5 3.1E-14 1.1E-18 123.2 9.2 85 223-321 43-130 (143)
166 2cjk_A Nuclear polyadenylated 99.5 1.8E-14 6.1E-19 125.8 7.5 80 225-321 87-166 (167)
167 2e44_A Insulin-like growth fac 99.5 4E-14 1.4E-18 113.9 8.9 77 224-321 14-92 (96)
168 3md3_A Nuclear and cytoplasmic 99.5 8.3E-14 2.8E-18 120.8 11.6 80 223-319 85-165 (166)
169 1x5p_A Negative elongation fac 99.5 1.7E-13 5.8E-18 110.8 12.2 75 223-322 13-88 (97)
170 1l3k_A Heterogeneous nuclear r 99.5 6.7E-14 2.3E-18 125.3 10.5 81 225-322 104-184 (196)
171 1wf0_A TDP-43, TAR DNA-binding 99.5 4.7E-14 1.6E-18 111.9 8.1 77 224-323 4-80 (88)
172 1wg1_A KIAA1579 protein, homol 99.5 5.7E-14 2E-18 111.7 8.5 74 223-320 3-77 (88)
173 2qfj_A FBP-interacting repress 99.5 1E-13 3.5E-18 126.0 11.0 81 225-322 125-206 (216)
174 2g4b_A Splicing factor U2AF 65 99.5 7.9E-14 2.7E-18 122.3 8.9 78 225-319 94-172 (172)
175 2voo_A Lupus LA protein; RNA-b 99.5 1.3E-13 4.3E-18 126.2 10.4 78 225-320 109-186 (193)
176 2f3j_A RNA and export factor b 99.5 8.8E-14 3E-18 125.7 9.2 80 223-320 86-166 (177)
177 4f02_A Polyadenylate-binding p 99.5 1.4E-13 4.7E-18 126.7 10.4 78 225-321 103-181 (213)
178 2yh0_A Splicing factor U2AF 65 99.5 1.4E-13 4.9E-18 123.3 10.0 83 223-322 112-195 (198)
179 3pgw_S U1-70K; protein-RNA com 99.5 1E-13 3.6E-18 141.9 10.2 81 224-321 101-182 (437)
180 2dnl_A Cytoplasmic polyadenyla 99.4 3.1E-13 1.1E-17 112.8 9.5 80 223-319 6-86 (114)
181 3beg_B Splicing factor, argini 99.4 1.3E-13 4.3E-18 115.6 7.1 73 224-320 15-93 (115)
182 3zzy_A Polypyrimidine tract-bi 99.4 7.7E-13 2.6E-17 114.1 12.0 76 225-322 28-107 (130)
183 1b7f_A Protein (SXL-lethal pro 99.4 4.4E-13 1.5E-17 116.8 10.3 79 223-318 87-168 (168)
184 2j8a_A Histone-lysine N-methyl 99.4 2E-13 6.7E-18 117.5 7.5 77 226-319 3-94 (136)
185 2cq2_A Hypothetical protein LO 99.4 2.2E-13 7.7E-18 115.0 7.7 73 224-319 24-104 (114)
186 3nmr_A Cugbp ELAV-like family 99.4 4.2E-13 1.4E-17 117.5 9.7 77 224-318 94-174 (175)
187 1sjr_A Polypyrimidine tract-bi 99.4 5.6E-13 1.9E-17 119.3 10.3 77 225-322 46-125 (164)
188 2e5i_A Heterogeneous nuclear r 99.4 8.6E-13 2.9E-17 113.0 10.3 74 226-322 26-103 (124)
189 1fxl_A Paraneoplastic encephal 99.4 6.5E-13 2.2E-17 115.3 9.7 78 224-318 87-167 (167)
190 2pe8_A Splicing factor 45; RRM 99.4 1.8E-12 6.2E-17 107.5 11.1 82 223-320 6-93 (105)
191 2diu_A KIAA0430 protein; struc 99.4 6.7E-13 2.3E-17 108.2 8.1 71 224-321 7-84 (96)
192 2bz2_A Negative elongation fac 99.4 7.9E-13 2.7E-17 112.1 8.7 74 223-321 37-111 (121)
193 1fje_B Nucleolin RBD12, protei 99.4 1.1E-12 3.7E-17 115.6 9.1 76 223-320 97-173 (175)
194 4fxv_A ELAV-like protein 1; RN 99.4 5.3E-13 1.8E-17 109.1 5.8 58 335-396 18-75 (99)
195 3u1l_A PRE-mRNA-splicing facto 99.4 1.2E-12 4E-17 124.1 8.6 76 222-320 131-228 (240)
196 2lxi_A RNA-binding protein 10; 99.3 1.4E-13 4.9E-18 110.6 1.4 57 336-396 1-58 (91)
197 2dit_A HIV TAT specific factor 99.3 1.2E-11 4.3E-16 102.8 11.8 80 222-322 12-103 (112)
198 2lkz_A RNA-binding protein 5; 99.3 4.7E-13 1.6E-17 109.0 2.8 57 336-396 9-67 (95)
199 2lea_A Serine/arginine-rich sp 99.3 7.6E-13 2.6E-17 114.1 4.1 98 285-396 5-103 (135)
200 3s7r_A Heterogeneous nuclear r 99.3 2.5E-12 8.5E-17 101.4 6.4 59 334-396 9-67 (87)
201 3s8s_A Histone-lysine N-methyl 99.3 1.9E-12 6.3E-17 108.0 5.9 58 335-396 5-62 (110)
202 1s79_A Lupus LA protein; RRM, 99.3 2.6E-12 9.1E-17 105.9 6.3 57 335-396 10-66 (103)
203 3pgw_A U1-A; protein-RNA compl 99.3 9E-12 3.1E-16 118.4 10.2 75 223-319 205-281 (282)
204 2dgs_A DAZ-associated protein 99.3 4.7E-12 1.6E-16 102.3 6.8 60 333-396 7-66 (99)
205 1qm9_A Polypyrimidine tract-bi 99.3 5.4E-12 1.8E-16 113.7 7.7 75 224-320 119-196 (198)
206 3pgw_S U1-70K; protein-RNA com 99.3 1E-12 3.5E-17 134.5 2.4 59 334-396 100-158 (437)
207 2adc_A Polypyrimidine tract-bi 99.3 1.3E-11 4.5E-16 114.6 9.7 75 224-320 150-227 (229)
208 2dnm_A SRP46 splicing factor; 99.3 6.6E-12 2.3E-16 102.2 6.5 61 332-396 9-69 (103)
209 1rk8_A CG8781-PA, CG8781-PA pr 99.3 4.8E-12 1.6E-16 112.2 6.1 104 289-396 11-128 (165)
210 2dh8_A DAZ-associated protein 99.3 1E-11 3.5E-16 101.4 7.5 60 333-396 13-72 (105)
211 1x4e_A RNA binding motif, sing 99.2 4.3E-12 1.5E-16 99.6 5.0 58 335-396 4-61 (85)
212 3bs9_A Nucleolysin TIA-1 isofo 99.2 5.7E-12 2E-16 99.0 5.6 58 335-396 5-62 (87)
213 3md1_A Nuclear and cytoplasmic 99.2 5.9E-12 2E-16 98.1 5.6 56 337-396 2-57 (83)
214 3mdf_A Peptidyl-prolyl CIS-tra 99.2 4.5E-12 1.5E-16 99.2 4.7 59 334-396 5-63 (85)
215 3p5t_L Cleavage and polyadenyl 99.2 2.5E-12 8.7E-17 102.5 3.3 56 337-396 2-59 (90)
216 2cqg_A TDP-43, TAR DNA-binding 99.2 8.7E-12 3E-16 101.5 6.5 60 333-396 12-71 (103)
217 2div_A TRNA selenocysteine ass 99.2 7E-12 2.4E-16 101.2 5.9 60 333-396 6-66 (99)
218 1x4h_A RNA-binding protein 28; 99.2 6.5E-12 2.2E-16 103.3 5.7 60 333-396 12-71 (111)
219 3tyt_A Heterogeneous nuclear r 99.2 1.1E-11 3.8E-16 114.1 7.9 76 224-318 122-204 (205)
220 1uaw_A Mouse-musashi-1; RNP-ty 99.2 3.9E-12 1.3E-16 97.7 3.9 56 337-396 1-56 (77)
221 3ns6_A Eukaryotic translation 99.2 2.5E-12 8.7E-17 104.8 3.0 57 336-396 6-68 (100)
222 3sde_A Paraspeckle component 1 99.2 2.5E-11 8.7E-16 115.0 10.3 79 225-321 96-179 (261)
223 2cqc_A Arginine/serine-rich sp 99.2 1.1E-11 3.8E-16 98.9 6.6 60 333-396 12-71 (95)
224 2x1f_A MRNA 3'-END-processing 99.2 6.6E-12 2.2E-16 101.0 5.2 57 336-396 2-58 (96)
225 2rs2_A Musashi-1, RNA-binding 99.2 6.6E-12 2.3E-16 104.0 5.3 60 333-396 22-81 (109)
226 3ucg_A Polyadenylate-binding p 99.2 9.3E-12 3.2E-16 98.2 5.9 57 336-396 6-62 (89)
227 2dnz_A Probable RNA-binding pr 99.2 1E-11 3.5E-16 99.3 6.2 58 335-396 4-61 (95)
228 1whw_A Hypothetical protein ri 99.2 9.5E-12 3.2E-16 100.4 5.7 59 334-396 6-64 (99)
229 2dhg_A TRNA selenocysteine ass 99.2 1.2E-11 4.2E-16 100.6 6.4 59 333-396 6-65 (104)
230 2e5h_A Zinc finger CCHC-type a 99.2 1.3E-11 4.3E-16 98.6 6.3 60 333-396 13-72 (94)
231 1jmt_A Splicing factor U2AF 35 99.2 6.1E-12 2.1E-16 104.0 4.5 71 230-318 20-103 (104)
232 3v4m_A Splicing factor U2AF 65 99.2 3.4E-11 1.2E-15 99.7 8.9 82 223-319 3-95 (105)
233 2cq4_A RNA binding motif prote 99.2 1.4E-11 4.7E-16 102.2 6.5 59 334-396 23-81 (114)
234 1iqt_A AUF1, heterogeneous nuc 99.2 4.5E-12 1.5E-16 97.0 3.1 55 338-396 1-55 (75)
235 2la6_A RNA-binding protein FUS 99.2 1.2E-11 4.2E-16 100.0 5.8 60 333-396 10-77 (99)
236 1x5s_A Cold-inducible RNA-bind 99.2 9.6E-12 3.3E-16 100.9 5.1 60 333-396 9-68 (102)
237 1wg5_A Heterogeneous nuclear r 99.2 1.2E-11 4.1E-16 101.4 5.7 59 333-396 12-71 (104)
238 2dgp_A Bruno-like 4, RNA bindi 99.2 8.4E-12 2.9E-16 102.0 4.7 60 333-396 10-69 (106)
239 2hgn_A Heterogeneous nuclear r 99.2 4.3E-12 1.5E-16 110.5 3.1 99 285-396 2-100 (139)
240 2xs2_A Deleted in azoospermia- 99.2 1.5E-11 5E-16 100.0 6.1 58 334-396 7-64 (102)
241 2dng_A Eukaryotic translation 99.2 1.7E-11 5.9E-16 99.8 6.5 59 333-396 12-70 (103)
242 1x5u_A Splicing factor 3B subu 99.2 1.4E-11 4.8E-16 100.4 5.9 60 333-396 12-71 (105)
243 1p27_B RNA-binding protein 8A; 99.2 1.4E-11 4.8E-16 100.6 6.0 60 333-396 20-79 (106)
244 2mss_A Protein (musashi1); RNA 99.2 6.4E-12 2.2E-16 96.3 3.5 55 338-396 1-55 (75)
245 2cqb_A Peptidyl-prolyl CIS-tra 99.2 7.9E-12 2.7E-16 101.4 4.2 60 333-396 9-68 (102)
246 2cqd_A RNA-binding region cont 99.2 1.7E-11 5.8E-16 102.0 6.2 60 333-396 14-73 (116)
247 2cq0_A Eukaryotic translation 99.2 1.3E-11 4.4E-16 100.5 5.3 60 333-396 12-71 (103)
248 2dgo_A Cytotoxic granule-assoc 99.2 2E-11 6.9E-16 101.2 6.6 60 333-396 12-71 (115)
249 2cph_A RNA binding motif prote 99.2 1.9E-11 6.5E-16 99.9 6.3 60 333-396 12-72 (107)
250 2dnh_A Bruno-like 5, RNA bindi 99.2 2.2E-11 7.5E-16 99.3 6.5 58 334-396 13-70 (105)
251 1x5t_A Splicing factor 3B subu 99.2 8.1E-12 2.8E-16 100.1 3.8 58 335-396 4-62 (96)
252 2cpz_A CUG triplet repeat RNA- 99.2 1.6E-11 5.5E-16 102.0 5.4 59 334-396 23-81 (115)
253 1p1t_A Cleavage stimulation fa 99.2 7.8E-12 2.7E-16 101.7 3.3 60 333-396 5-64 (104)
254 2khc_A Testis-specific RNP-typ 99.2 3.3E-11 1.1E-15 100.4 7.2 60 333-396 37-96 (118)
255 2do4_A Squamous cell carcinoma 99.2 3.4E-11 1.2E-15 97.4 7.1 58 334-396 15-72 (100)
256 4f25_A Polyadenylate-binding p 99.2 1.3E-11 4.4E-16 103.1 4.7 55 336-396 5-59 (115)
257 2ywk_A Putative RNA-binding pr 99.2 2.5E-11 8.7E-16 97.0 6.2 59 333-396 13-71 (95)
258 3ue2_A Poly(U)-binding-splicin 99.2 9.9E-11 3.4E-15 99.1 10.1 83 224-319 19-107 (118)
259 2jrs_A RNA-binding protein 39; 99.2 1.9E-11 6.5E-16 101.2 5.5 60 333-396 23-82 (108)
260 1oo0_B CG8781-PA, drosophila Y 99.2 1.9E-11 6.4E-16 100.7 5.4 60 333-396 23-82 (110)
261 2cpf_A RNA binding motif prote 99.2 1.3E-11 4.3E-16 99.5 4.2 58 335-396 4-64 (98)
262 1wi8_A EIF-4B, eukaryotic tran 99.2 2E-11 6.8E-16 99.6 5.5 58 334-396 13-71 (104)
263 2hgl_A HNRPF protein, heteroge 99.2 1.2E-11 4E-16 107.4 4.3 58 334-396 42-102 (136)
264 3d2w_A TAR DNA-binding protein 99.2 1.4E-11 4.8E-16 98.5 4.5 54 334-396 9-62 (89)
265 3n9u_C Cleavage and polyadenyl 99.2 1.7E-11 5.7E-16 108.5 5.4 58 335-396 54-113 (156)
266 1wez_A HnRNP H', FTP-3, hetero 99.2 2.1E-11 7.1E-16 100.1 5.4 57 334-396 13-69 (102)
267 2m2b_A RNA-binding protein 10; 99.2 1.1E-11 3.6E-16 105.9 3.7 59 333-396 20-80 (131)
268 2cpy_A RNA-binding protein 12; 99.2 1.5E-11 5.1E-16 102.5 4.4 59 333-396 12-71 (114)
269 2kxn_B Transformer-2 protein h 99.2 3.8E-11 1.3E-15 102.7 7.0 60 333-396 43-102 (129)
270 1x4b_A Heterogeneous nuclear r 99.2 1.8E-11 6.2E-16 101.8 4.8 59 334-396 25-83 (116)
271 3ulh_A THO complex subunit 4; 99.2 3.2E-11 1.1E-15 98.7 5.8 59 333-396 26-84 (107)
272 2dha_A FLJ20171 protein; RRM d 99.1 1.5E-11 5E-16 105.0 3.7 61 335-396 22-82 (123)
273 2j76_E EIF-4B, EIF4B, eukaryot 99.1 1.8E-11 6.1E-16 99.6 3.7 59 333-396 16-75 (100)
274 2d9p_A Polyadenylate-binding p 99.1 4.8E-11 1.6E-15 97.1 6.3 58 333-396 12-69 (103)
275 2dis_A Unnamed protein product 99.1 2.6E-11 9.1E-16 99.5 4.6 58 335-396 7-66 (109)
276 1sjq_A Polypyrimidine tract-bi 99.1 3.2E-11 1.1E-15 100.3 4.9 53 334-396 14-66 (105)
277 2dgv_A HnRNP M, heterogeneous 99.1 6.1E-11 2.1E-15 94.2 6.4 58 333-396 5-62 (92)
278 2kt5_A RNA and export factor-b 99.1 5.3E-11 1.8E-15 100.3 6.3 60 332-396 31-90 (124)
279 2fy1_A RNA-binding motif prote 99.1 4.3E-11 1.5E-15 100.3 5.5 58 334-396 5-62 (116)
280 2krb_A Eukaryotic translation 99.1 3E-11 1E-15 94.2 4.1 54 337-396 2-61 (81)
281 1x5o_A RNA binding motif, sing 99.1 7.9E-11 2.7E-15 97.5 6.9 58 334-396 23-80 (114)
282 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.1 6.5E-11 2.2E-15 101.0 6.4 60 333-396 60-119 (140)
283 3ex7_B RNA-binding protein 8A; 99.1 3.8E-11 1.3E-15 101.2 4.8 60 333-396 19-78 (126)
284 2jwn_A Embryonic polyadenylate 99.1 3.4E-11 1.2E-15 101.2 4.5 58 335-396 35-92 (124)
285 2db1_A Heterogeneous nuclear r 99.1 2.9E-11 9.8E-16 101.7 4.0 58 334-396 15-75 (118)
286 2cpe_A RNA-binding protein EWS 99.1 3.8E-11 1.3E-15 99.3 4.6 59 334-396 13-79 (113)
287 4a8x_A RNA-binding protein wit 99.1 2.7E-11 9.2E-16 95.2 3.5 57 336-396 4-61 (88)
288 2dnl_A Cytoplasmic polyadenyla 99.1 2.8E-11 9.7E-16 100.8 3.7 58 334-396 6-66 (114)
289 2do0_A HnRNP M, heterogeneous 99.1 8.9E-11 3.1E-15 97.0 6.7 59 333-396 12-70 (114)
290 2ek1_A RNA-binding protein 12; 99.1 1.6E-11 5.5E-16 98.1 2.1 59 334-396 13-71 (95)
291 1u6f_A Tcubp1, RNA-binding pro 99.1 3.9E-11 1.3E-15 102.8 4.7 60 333-396 39-98 (139)
292 2ki2_A SS-DNA binding protein 99.1 1.7E-11 5.7E-16 97.2 2.0 55 337-396 2-56 (90)
293 2ad9_A Polypyrimidine tract-bi 99.1 5.7E-11 2E-15 100.9 5.3 55 332-396 27-81 (119)
294 2dnn_A RNA-binding protein 12; 99.1 5E-11 1.7E-15 99.4 4.7 58 333-396 13-70 (109)
295 1wel_A RNA-binding protein 12; 99.1 3.8E-11 1.3E-15 101.4 4.0 60 333-396 22-81 (124)
296 2hgm_A HNRPF protein, heteroge 99.1 8.2E-11 2.8E-15 100.8 6.0 57 334-396 40-98 (126)
297 2lmi_A GRSF-1, G-rich sequence 99.1 2.7E-11 9.2E-16 99.8 2.9 58 334-396 9-69 (107)
298 1h2v_Z 20 kDa nuclear CAP bind 99.1 8E-11 2.7E-15 103.0 6.0 59 334-396 37-95 (156)
299 2cqp_A RNA-binding protein 12; 99.1 3.1E-11 1.1E-15 97.2 2.9 60 333-396 12-71 (98)
300 2cq1_A PTB-like protein L; RRM 99.1 9E-11 3.1E-15 96.6 5.5 54 333-396 12-65 (101)
301 3q2s_C Cleavage and polyadenyl 99.1 8.1E-11 2.8E-15 110.3 6.0 58 335-396 67-126 (229)
302 2dgw_A Probable RNA-binding pr 99.1 1E-10 3.4E-15 93.0 5.7 57 334-396 8-64 (91)
303 3r27_A HnRNP L, heterogeneous 99.1 9.4E-11 3.2E-15 96.6 5.4 54 333-396 18-71 (100)
304 2cq3_A RNA-binding protein 9; 99.1 1.7E-10 5.7E-15 93.8 6.8 58 333-396 12-69 (103)
305 2cqi_A Nucleolysin TIAR; RNA r 99.1 1.3E-10 4.5E-15 94.4 6.2 58 333-396 12-69 (103)
306 2nlw_A Eukaryotic translation 99.1 1.5E-10 5.2E-15 95.0 6.0 56 335-396 14-75 (105)
307 1wf0_A TDP-43, TAR DNA-binding 99.1 4.7E-11 1.6E-15 94.5 2.8 53 335-396 4-56 (88)
308 1wex_A Hypothetical protein (r 99.1 1.7E-10 5.7E-15 95.4 6.2 54 333-396 12-65 (104)
309 2dgx_A KIAA0430 protein; RRM d 99.0 1.5E-10 5.1E-15 93.4 5.0 57 333-396 6-66 (96)
310 1x4d_A Matrin 3; structural ge 99.0 9E-11 3.1E-15 96.9 3.5 54 333-396 12-66 (102)
311 3tht_A Alkylated DNA repair pr 99.0 4.1E-10 1.4E-14 111.9 8.5 74 222-318 15-96 (345)
312 2d9o_A DNAJ (HSP40) homolog, s 99.0 2.2E-09 7.6E-14 88.2 11.5 74 225-321 10-90 (100)
313 1x4a_A Splicing factor, argini 99.0 2.4E-10 8.2E-15 93.9 5.6 57 333-396 19-75 (109)
314 2err_A Ataxin-2-binding protei 99.0 1.8E-10 6.2E-15 95.2 4.8 58 333-396 26-83 (109)
315 2voo_A Lupus LA protein; RNA-b 99.0 1.9E-10 6.5E-15 105.0 5.4 99 293-396 63-164 (193)
316 3lqv_A PRE-mRNA branch site pr 99.0 2.5E-10 8.6E-15 94.6 5.4 56 334-396 6-61 (115)
317 2lcw_A RNA-binding protein FUS 98.6 3.6E-11 1.2E-15 100.1 0.0 59 334-396 5-71 (116)
318 2j8a_A Histone-lysine N-methyl 99.0 2.7E-10 9.2E-15 98.0 4.9 51 337-391 3-57 (136)
319 2ytc_A PRE-mRNA-splicing facto 99.0 6.1E-10 2.1E-14 87.0 6.3 54 333-396 9-62 (85)
320 2cpi_A CCR4-NOT transcription 99.0 2.1E-10 7.1E-15 95.0 3.6 58 335-396 14-77 (111)
321 1x4c_A Splicing factor, argini 99.0 5.9E-10 2E-14 91.7 5.7 53 333-396 12-64 (108)
322 2fc9_A NCL protein; structure 99.0 4.1E-10 1.4E-14 91.1 4.5 56 333-396 12-67 (101)
323 3s6e_A RNA-binding protein 39; 99.0 2.3E-09 8E-14 90.1 9.2 76 223-319 5-91 (114)
324 2fc8_A NCL protein; structure 98.9 6.7E-10 2.3E-14 89.9 5.6 57 333-396 12-68 (102)
325 1x4f_A Matrin 3; structural ge 98.9 2.8E-10 9.5E-15 95.6 3.2 54 333-396 22-76 (112)
326 1fj7_A Nucleolin RBD1, protein 98.9 4.6E-11 1.6E-15 96.8 -1.8 58 334-396 15-72 (101)
327 1why_A Hypothetical protein ri 98.9 6.9E-10 2.4E-14 89.2 5.0 54 333-396 14-67 (97)
328 2dnq_A RNA-binding protein 4B; 98.9 9.1E-10 3.1E-14 87.3 5.5 51 334-396 6-56 (90)
329 1nu4_A U1A RNA binding domain; 98.9 2.3E-10 7.8E-15 91.7 2.0 57 333-396 5-65 (97)
330 2a3j_A U1 small nuclear ribonu 98.9 6.6E-10 2.3E-14 95.1 4.9 57 333-396 26-86 (127)
331 1wf1_A RNA-binding protein RAL 98.9 8.6E-10 2.9E-14 90.8 5.4 70 309-396 6-76 (110)
332 2cpx_A Hypothetical protein FL 98.9 1.6E-10 5.6E-15 95.6 0.9 56 333-396 22-81 (115)
333 2hvz_A Splicing factor, argini 98.9 5E-10 1.7E-14 90.6 3.5 51 337-396 1-51 (101)
334 2f3j_A RNA and export factor b 98.9 6.7E-10 2.3E-14 100.1 4.6 59 333-396 85-143 (177)
335 2cpj_A Non-POU domain-containi 98.9 9.6E-10 3.3E-14 88.7 5.1 54 333-396 12-65 (99)
336 1x4g_A Nucleolysin TIAR; struc 98.9 9.1E-10 3.1E-14 90.5 4.6 52 335-396 24-75 (109)
337 2wbr_A GW182, gawky, LD47780P; 98.9 8.6E-10 2.9E-14 88.8 3.9 52 335-396 6-57 (89)
338 2la4_A Nuclear and cytoplasmic 98.9 1.3E-09 4.3E-14 88.2 4.9 52 335-396 26-77 (101)
339 2kvi_A Nuclear polyadenylated 98.8 1.5E-09 5.3E-14 87.2 4.3 52 333-396 7-59 (96)
340 1whx_A Hypothetical protein ri 98.8 1.1E-09 3.6E-14 91.0 3.3 52 335-396 9-60 (111)
341 2xnq_A Nuclear polyadenylated 98.8 2.4E-09 8.1E-14 86.7 5.3 52 333-396 19-71 (97)
342 3beg_B Splicing factor, argini 98.8 1.2E-09 4.1E-14 91.1 3.6 51 335-396 15-65 (115)
343 2jvo_A Nucleolar protein 3; nu 98.8 2E-09 6.7E-14 89.0 4.9 52 333-396 28-79 (108)
344 2jvr_A Nucleolar protein 3; RN 98.8 8.7E-10 3E-14 92.3 2.6 54 335-396 27-81 (111)
345 2dgu_A Heterogeneous nuclear r 98.8 2.2E-09 7.5E-14 87.3 4.9 52 333-396 8-59 (103)
346 2dgt_A RNA-binding protein 30; 98.8 2.6E-09 8.9E-14 85.0 5.0 52 333-396 7-58 (92)
347 2e5j_A Methenyltetrahydrofolat 98.8 1.6E-09 5.5E-14 87.2 3.8 54 334-396 17-70 (97)
348 2e5g_A U6 snRNA-specific termi 98.8 4.1E-09 1.4E-13 84.3 6.2 53 335-396 7-59 (94)
349 2hzc_A Splicing factor U2AF 65 98.8 1.1E-09 3.8E-14 85.8 2.7 56 335-396 5-67 (87)
350 2cq2_A Hypothetical protein LO 98.8 1.4E-09 4.7E-14 91.7 3.3 54 333-396 22-77 (114)
351 1fjc_A Nucleolin RBD2, protein 98.8 8.2E-10 2.8E-14 88.4 1.8 55 333-396 13-67 (96)
352 2cpd_A Apobec-1 stimulating pr 98.8 5.6E-09 1.9E-13 84.2 6.4 54 333-396 12-65 (99)
353 2dnp_A RNA-binding protein 14; 98.8 3.8E-09 1.3E-13 83.7 4.7 51 334-396 7-57 (90)
354 3egn_A RNA-binding protein 40; 98.8 2.2E-09 7.7E-14 92.4 2.7 56 334-396 43-106 (143)
355 2cqh_A IGF-II mRNA-binding pro 98.7 2.4E-09 8E-14 85.3 1.8 52 334-396 6-58 (93)
356 2e44_A Insulin-like growth fac 98.7 5.8E-09 2E-13 83.4 3.3 55 334-396 13-68 (96)
357 1wg1_A KIAA1579 protein, homol 98.7 7.9E-09 2.7E-13 81.7 3.0 51 335-396 4-54 (88)
358 1sjr_A Polypyrimidine tract-bi 98.7 1.7E-08 5.7E-13 90.2 5.5 53 336-396 46-98 (164)
359 2dnr_A Synaptojanin-1; RRM dom 98.6 7E-08 2.4E-12 77.8 8.1 73 223-320 5-85 (91)
360 1x5p_A Negative elongation fac 98.6 3.4E-08 1.2E-12 79.3 5.7 51 334-396 13-63 (97)
361 1owx_A Lupus LA protein, SS-B, 98.6 9.7E-08 3.3E-12 81.1 8.5 73 224-319 17-94 (121)
362 3zzy_A Polypyrimidine tract-bi 98.6 2.7E-08 9.1E-13 85.7 5.0 52 336-396 28-80 (130)
363 2e5i_A Heterogeneous nuclear r 98.6 6.4E-08 2.2E-12 82.5 6.0 50 337-396 26-76 (124)
364 2pe8_A Splicing factor 45; RRM 98.6 6.7E-08 2.3E-12 79.8 5.9 59 334-396 6-70 (105)
365 3u1l_A PRE-mRNA-splicing facto 98.5 5.2E-08 1.8E-12 92.2 4.8 54 333-396 131-193 (240)
366 2diu_A KIAA0430 protein; struc 98.5 5.7E-08 2E-12 79.1 4.2 50 334-396 6-60 (96)
367 2bz2_A Negative elongation fac 98.5 6.2E-08 2.1E-12 81.7 3.7 51 334-396 37-87 (121)
368 3tht_A Alkylated DNA repair pr 98.4 1.1E-07 3.6E-12 94.5 3.8 54 333-396 15-70 (345)
369 3dxb_A Thioredoxin N-terminall 98.4 5.2E-07 1.8E-11 83.0 7.9 70 237-319 141-211 (222)
370 1ufw_A Synaptojanin 2; RNP dom 98.4 4.3E-07 1.5E-11 73.7 6.1 72 223-319 13-93 (95)
371 3v4m_A Splicing factor U2AF 65 98.2 7.3E-07 2.5E-11 73.4 4.1 58 335-396 4-73 (105)
372 2d9o_A DNAJ (HSP40) homolog, s 98.2 2E-06 6.8E-11 70.4 6.5 42 346-396 27-68 (100)
373 1jmt_A Splicing factor U2AF 35 98.2 3.1E-07 1.1E-11 75.5 1.5 52 340-396 19-82 (104)
374 3ue2_A Poly(U)-binding-splicin 98.2 9.9E-07 3.4E-11 74.4 3.7 58 335-396 19-85 (118)
375 2dit_A HIV TAT specific factor 98.2 1.4E-06 4.9E-11 71.9 4.5 56 333-396 12-78 (112)
376 1owx_A Lupus LA protein, SS-B, 98.0 2.9E-06 9.8E-11 72.1 4.1 53 333-395 15-69 (121)
377 2l9w_A U4/U6 snRNA-associated- 97.9 3.2E-05 1.1E-09 64.2 8.4 71 225-318 21-97 (117)
378 2dhx_A Poly (ADP-ribose) polym 97.8 0.00012 4E-09 60.2 10.3 88 224-349 7-99 (104)
379 3s6e_A RNA-binding protein 39; 97.4 0.0001 3.4E-09 61.6 3.7 54 335-396 6-69 (114)
380 1whv_A Poly(A)-specific ribonu 97.1 0.0016 5.3E-08 53.0 7.7 55 222-302 13-67 (100)
381 1wey_A Calcipressin 1; structu 96.9 0.006 2.1E-07 50.1 9.6 74 224-320 4-83 (104)
382 1wwh_A Nucleoporin 35, nucleop 96.8 0.0052 1.8E-07 51.7 8.9 72 224-319 23-95 (119)
383 3ctr_A Poly(A)-specific ribonu 96.5 0.0024 8.2E-08 52.0 4.2 51 226-302 7-57 (101)
384 1uw4_A UPF3X; nonsense mediate 96.4 0.016 5.6E-07 46.4 8.7 70 226-310 2-72 (91)
385 3dxb_A Thioredoxin N-terminall 96.2 0.0035 1.2E-07 57.1 4.6 45 348-396 141-189 (222)
386 2dnr_A Synaptojanin-1; RRM dom 96.0 0.0047 1.6E-07 49.6 3.8 51 334-396 5-63 (91)
387 3p3d_A Nucleoporin 53; structu 95.1 0.051 1.7E-06 46.4 7.2 90 226-320 8-98 (132)
388 1ufw_A Synaptojanin 2; RNP dom 95.1 0.0078 2.7E-07 48.6 1.9 52 333-396 12-72 (95)
389 1uw4_A UPF3X; nonsense mediate 94.0 0.058 2E-06 43.2 4.6 56 337-396 2-59 (91)
390 3pq1_A Poly(A) RNA polymerase; 93.9 0.027 9.3E-07 57.7 3.2 58 225-305 53-110 (464)
391 2dhx_A Poly (ADP-ribose) polym 93.5 0.095 3.3E-06 42.9 5.1 52 335-396 7-61 (104)
392 2l08_A Regulator of nonsense t 93.4 0.11 3.7E-06 42.1 5.3 71 225-310 9-80 (97)
393 1whv_A Poly(A)-specific ribonu 93.2 0.082 2.8E-06 42.9 4.2 48 336-396 16-63 (100)
394 3ctr_A Poly(A)-specific ribonu 91.8 0.14 4.9E-06 41.6 3.9 48 336-396 6-53 (101)
395 3d45_A Poly(A)-specific ribonu 85.8 1.7 5.9E-05 44.8 8.0 54 223-302 438-491 (507)
396 3pq1_A Poly(A) RNA polymerase; 84.2 0.52 1.8E-05 48.2 3.1 52 335-396 52-103 (464)
397 2l08_A Regulator of nonsense t 81.7 0.44 1.5E-05 38.5 1.1 57 336-396 9-67 (97)
398 2l9w_A U4/U6 snRNA-associated- 80.2 1.7 5.9E-05 36.0 4.2 54 336-395 21-75 (117)
399 1wwh_A Nucleoporin 35, nucleop 52.1 18 0.00062 30.0 4.8 50 336-396 24-73 (119)
400 1wey_A Calcipressin 1; structu 47.1 24 0.00082 28.6 4.6 51 336-396 5-60 (104)
401 3d45_A Poly(A)-specific ribonu 33.1 41 0.0014 34.4 4.9 48 336-396 440-487 (507)
402 4e8u_A Putative uncharacterize 20.3 1.3E+02 0.0045 26.3 5.1 59 226-304 13-83 (172)
No 1
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.96 E-value=4.4e-29 Score=224.86 Aligned_cols=151 Identities=18% Similarity=0.354 Sum_probs=128.6
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|.+|.|+.++ .+|.++|||||+|.+.++|..||
T Consensus 10 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~A~~A~ 72 (196)
T 1l3k_A 10 PEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDP-----------------NTKRSRGFGFVTYATVEEVDAAM 72 (196)
T ss_dssp CGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-----------------TTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcC-----------------CCCCccceEEEEeCCHHHHHHHH
Confidence 3457899999999999999999999999999999997754 23456799999999999999999
Q ss_pred HhcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~ 381 (397)
.+++..|.|+.|.|.++.+....... ......++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.+
T Consensus 73 ~~~~~~~~g~~l~v~~~~~~~~~~~~---~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~ 145 (196)
T 1l3k_A 73 NARPHKVDGRVVEPKRAVSREDSQRP---GAHLTVKKIFVGGIKEDTEEHHLRDYFEQY----GKIEVIEIMTDRGSGKK 145 (196)
T ss_dssp HTCSCEETTEECEEEECCC--------------CCSEEEEECCTTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCE
T ss_pred hcCCCEECCEEeeeecccCccccccc---ccCCCcceEEEeCCCCCCCHHHHHHHHhcC----CCeEEEEEeecCCCCCc
Confidence 88999999999999998754322211 123346899999999999999999999999 99999999999989999
Q ss_pred ccEEEEEeccccccc
Q 015974 382 KGIAYVLFKTRDNWI 396 (397)
Q Consensus 382 kGfAFV~F~s~e~A~ 396 (397)
+|||||+|.+.++|.
T Consensus 146 ~g~afV~F~~~~~A~ 160 (196)
T 1l3k_A 146 RGFAFVTFDDHDSVD 160 (196)
T ss_dssp EEEEEEEESSHHHHH
T ss_pred cceEEEEECCHHHHH
Confidence 999999999998874
No 2
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.5e-28 Score=213.24 Aligned_cols=142 Identities=23% Similarity=0.363 Sum_probs=127.4
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hhc
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (397)
|+|||+|||+.+|+++|+++|+.||.|.+|+++.++ .+.++|||||+|.+.++|..|+ .+|
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~------------------~~~~~g~afV~f~~~~~a~~A~~~l~ 62 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDK------------------NNKNVNYAFVEYHQSHDANIALQTLN 62 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCC------------------C-CCEEEEEEEESSHHHHHHHHHHHT
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECC------------------CCCCCCEEEEEeCCHHHHHHHHHHcC
Confidence 689999999999999999999999999999997653 2346799999999999999999 799
Q ss_pred CceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccE
Q 015974 305 MAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI 384 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGf 384 (397)
|..+.|+.|.|.++.+... ....+.++|||+|||..+++++|+++|+.| |.|..|.++++..+|.++||
T Consensus 63 ~~~~~g~~i~v~~~~~~~~-------~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~ 131 (166)
T 3md3_A 63 GKQIENNIVKINWAFQSQQ-------SSSDDTFNLFVGDLNVNVDDETLRNAFKDF----PSYLSGHVMWDMQTGSSRGY 131 (166)
T ss_dssp TCEETTEECEEEECCCCCC-------CCCTTCEEEEEESCCTTCCHHHHHHHHTTS----TTEEEEEEEECTTTCCEEEE
T ss_pred CCccCCCeeEEEEcCCCCC-------CCCCCCceEEECCCCCCCCHHHHHHHHhcc----CCeeEEEEEecCCCCCcceE
Confidence 9999999999999875432 223456899999999999999999999999 99999999999989999999
Q ss_pred EEEEeccccccc
Q 015974 385 AYVLFKTRDNWI 396 (397)
Q Consensus 385 AFV~F~s~e~A~ 396 (397)
|||+|.+.++|.
T Consensus 132 afV~f~~~~~A~ 143 (166)
T 3md3_A 132 GFVSFTSQDDAQ 143 (166)
T ss_dssp EEEEESCHHHHH
T ss_pred EEEEeCCHHHHH
Confidence 999999998874
No 3
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.96 E-value=4.7e-28 Score=211.74 Aligned_cols=142 Identities=18% Similarity=0.304 Sum_probs=127.9
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.++|||+|||+.+|+++|+++|+.||.|.+|+++.++ .+|.++|||||+|.+.++|..|+ .+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~-----------------~~~~~~g~afV~f~~~~~A~~a~~~l 64 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDK-----------------ITGQSLGYGFVNYIDPKDAEKAINTL 64 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-----------------TTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----------------CCCcceeEEEEEECCHHHHHHHHHHc
Confidence 5889999999999999999999999999999997653 23456799999999999999999 59
Q ss_pred cCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCcc
Q 015974 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kG 383 (397)
+|..+.|+.|.|.++.+... ....++|||+|||..+++++|+++|+.| |.|..|+++++..+|.++|
T Consensus 65 ~~~~~~g~~l~v~~~~~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g 131 (167)
T 1fxl_A 65 NGLRLQTKTIKVSYARPSSA---------SIRDANLYVSGLPKTMTQKELEQLFSQY----GRIITSRILVDQVTGVSRG 131 (167)
T ss_dssp TTCEETTEECEEEECCCCCG---------GGTTCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEE
T ss_pred CCCccCCceEEEEecCCCcc---------cCCCCcEEECCCCCcCCHHHHHHHHHhc----CCEeEEEEEecCCCCCccc
Confidence 99999999999999875432 2345789999999999999999999999 9999999999988899999
Q ss_pred EEEEEeccccccc
Q 015974 384 IAYVLFKTRDNWI 396 (397)
Q Consensus 384 fAFV~F~s~e~A~ 396 (397)
||||+|.+.++|.
T Consensus 132 ~afV~f~~~~~A~ 144 (167)
T 1fxl_A 132 VGFIRFDKRIEAE 144 (167)
T ss_dssp EEEEEESSHHHHH
T ss_pred eEEEEeCCHHHHH
Confidence 9999999998874
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.95 E-value=4.9e-28 Score=212.51 Aligned_cols=143 Identities=20% Similarity=0.336 Sum_probs=128.4
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+.+|+++|+.+|+.||.|.+|+++.++ .+|.++|||||+|.+.++|..|+ .
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~A~~a~~~ 64 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDY-----------------KTGYSYGYAFVDFTSEMDSQRAIKV 64 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEET-----------------TTTEECSEEEEEESSHHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeC-----------------CCCccceEEEEEECCHHHHHHHHHh
Confidence 36899999999999999999999999999999986653 24557799999999999999999 5
Q ss_pred hcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCc
Q 015974 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~k 382 (397)
++|..+.|+.|.|.++.+... ....++|||+|||..+++++|+++|+.| |.|..|+|+++..+|.++
T Consensus 65 l~~~~~~g~~l~v~~~~~~~~---------~~~~~~l~v~nl~~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~ 131 (168)
T 1b7f_A 65 LNGITVRNKRLKVSYARPGGE---------SIKDTNLYVTNLPRTITDDQLDTIFGKY----GSIVQKNILRDKLTGRPR 131 (168)
T ss_dssp HTTCEETTEECEEEECCCCSS---------TTTTCEEEEESCCTTCCHHHHHHHHTSS----SCEEEEEEEECTTTCCEE
T ss_pred cCCCEeCCcEEEEEecCCCcc---------cCCCCCEEEeCCCCCCCHHHHHHhhhcC----CcEEEEEEEEcCCCCCcc
Confidence 999999999999999875432 2345899999999999999999999999 999999999998889999
Q ss_pred cEEEEEeccccccc
Q 015974 383 GIAYVLFKTRDNWI 396 (397)
Q Consensus 383 GfAFV~F~s~e~A~ 396 (397)
|||||+|.+.++|.
T Consensus 132 g~afV~f~~~~~A~ 145 (168)
T 1b7f_A 132 GVAFVRYNKREEAQ 145 (168)
T ss_dssp EEEEEEESSHHHHH
T ss_pred eEEEEEECCHHHHH
Confidence 99999999998874
No 5
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.95 E-value=1.4e-28 Score=216.06 Aligned_cols=142 Identities=19% Similarity=0.377 Sum_probs=126.2
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHh
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (397)
+.++|||+|||+++|+++|+++|+.||.|.+|+|++++ .+|.++|||||.|.+.++|..|+.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~~- 63 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDP-----------------ATGRSRGFGFLSFEKPSSVDEVVK- 63 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCT-----------------TTSSCCSCEEEEESSTHHHHHHHH-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECC-----------------CCCCccceEEEEEccHHHHHHHHh-
Confidence 47899999999999999999999999999999986543 245678999999999999999997
Q ss_pred cCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCcc
Q 015974 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kG 383 (397)
++..+.|+.|.|.++.+... ..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|
T Consensus 64 ~~~~~~g~~i~v~~~~~~~~---------~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~g~~~g 130 (167)
T 2cjk_A 64 TQHILDGKVIDPKRAIPRDE---------QDKTGKIFVGGIGPDVRPKEFEEFFSQW----GTIIDAQLMLDKDTGQSRG 130 (167)
T ss_dssp SCCEETTEECCCEECCCHHH---------HHHCEEEEEEEECTTCCHHHHHHHHHTT----SCCSEEECCCSSSSSTTSE
T ss_pred cccccCCeEcccccccchhh---------ccCCCeEEECCCCCCCCHHHHHHHHHhC----ccEEEEEEEEcCCCCccce
Confidence 46789999999999875321 2345799999999999999999999999 9999999999988999999
Q ss_pred EEEEEeccccccc
Q 015974 384 IAYVLFKTRDNWI 396 (397)
Q Consensus 384 fAFV~F~s~e~A~ 396 (397)
||||+|.+.++|.
T Consensus 131 ~afV~f~~~~~a~ 143 (167)
T 2cjk_A 131 FGFVTYDSADAVD 143 (167)
T ss_dssp EEEEEESSHHHHH
T ss_pred EEEEEECCHHHHH
Confidence 9999999998874
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.95 E-value=8.2e-28 Score=222.29 Aligned_cols=143 Identities=22% Similarity=0.349 Sum_probs=125.0
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..+||||||||+++|+++|+++|++||.|.+|+|++++ .++.++|||||+|.+.++|..|| .
T Consensus 14 p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~-----------------~tg~~~G~afV~F~~~~~A~~Ai~~ 76 (213)
T 4f02_A 14 PMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDM-----------------ITRRSLGYAYVNFQQPADAERALDT 76 (213)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-----------------TTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeccc-----------------CCCCccccccceeCCHHHHHHHHHH
Confidence 36899999999999999999999999999999997764 24567799999999999999999 6
Q ss_pred hcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCc
Q 015974 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~k 382 (397)
+|+..+.|+.|++.++...... ......+|||+|||+.+++++|+++|+.| |.|..|+|+++. +.++
T Consensus 77 ~~~~~~~g~~i~~~~~~~~~~~-------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~~~i~~d~--~~~~ 143 (213)
T 4f02_A 77 MNFDVIKGKPVRIMWSQRDPSL-------RKSGVGNIFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDE--NGSK 143 (213)
T ss_dssp HTTCEETTEECEEEECCCCTHH-------HHHCTTEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEET--TEEE
T ss_pred hhhhhcCCcccccccccccccc-------cccccccceECCcccccHHHHHHHHHhhc----CCeEEEEeeccC--CCCc
Confidence 9999999999999998653221 12235789999999999999999999999 999999999985 4589
Q ss_pred cEEEEEeccccccc
Q 015974 383 GIAYVLFKTRDNWI 396 (397)
Q Consensus 383 GfAFV~F~s~e~A~ 396 (397)
|||||+|.+.++|.
T Consensus 144 g~~fV~f~~~~~a~ 157 (213)
T 4f02_A 144 GYGFVHFETQEAAE 157 (213)
T ss_dssp EEEEEEESSHHHHH
T ss_pred eEEEEEeCCHHHHH
Confidence 99999999998875
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.95 E-value=4.3e-27 Score=207.46 Aligned_cols=145 Identities=19% Similarity=0.321 Sum_probs=123.8
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
+.++|||+|||+.+|+++|+++|+.||.|.+|+|++++. ++ .+.++|||||+|.+.++|..|+ .
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~-------------~~~~~g~afV~f~~~~~A~~A~~~ 66 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRS--QN-------------PPQSKGCCFVTFYTRKAALEAQNA 66 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECS--SS-------------SCEEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCC--CC-------------CCCcceEEEEEECCHHHHHHHHHH
Confidence 368999999999999999999999999999999987652 11 1146799999999999999999 5
Q ss_pred hcCceec---ceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCC
Q 015974 303 FNMAVIG---GNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR 379 (397)
Q Consensus 303 lng~~l~---Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg 379 (397)
+++..+. ++.|.+.++.+... .....++|||+|||+.+++++|+++|+.| |.|..|+|+++. +|
T Consensus 67 l~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~v~~~~~~-~g 133 (175)
T 3nmr_A 67 LHNMKVLPGMHHPIQMKPADSEKN--------NAVEDRKLFIGMISKKCTENDIRVMFSSF----GQIEECRILRGP-DG 133 (175)
T ss_dssp HTTTCCCTTCSSCCEEEECGGGCC--------SCGGGSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECT-TS
T ss_pred hcCcEEccCCccceEEcccccccc--------ccCCCCeEEEcCCCCcCCHHHHHHHHHhC----CCEEEEEEEECC-CC
Confidence 9998775 67788877754321 12356899999999999999999999999 999999999996 49
Q ss_pred CCccEEEEEeccccccc
Q 015974 380 VGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 380 ~~kGfAFV~F~s~e~A~ 396 (397)
.++|||||+|.+.++|.
T Consensus 134 ~~~g~afV~f~~~~~A~ 150 (175)
T 3nmr_A 134 LSRGCAFVTFTTRAMAQ 150 (175)
T ss_dssp CEEEEEEEEESSHHHHH
T ss_pred CEEEEEEEEECCHHHHH
Confidence 99999999999998874
No 8
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.94 E-value=1.8e-27 Score=217.53 Aligned_cols=151 Identities=17% Similarity=0.340 Sum_probs=126.3
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH-h
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-F 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~-l 303 (397)
.++|||+|||+++|+++|+++|+.||.|.+|+|+.++ .++.++|||||.|.+.++|..||. |
T Consensus 28 ~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~A~~A~~~l 90 (216)
T 2qfj_A 28 MSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDS-----------------VTMKHKGFAFVEYEVPEAAQLALEQM 90 (216)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC------------------CC-CCCSEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecC-----------------CCCccCceEEEEeCCHHHHHHHHHHc
Confidence 5789999999999999999999999999999996543 234577999999999999999995 9
Q ss_pred cCceecceeeEEecCCCCccccCCC--CCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCC
Q 015974 304 NMAVIGGNHIRLDRACPPRKKLKGE--DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~--~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~ 381 (397)
|+..|.|+.|.|.++.......... ........++|||+|||..+++++|+++|+.| |.|..|+|+++..+|.+
T Consensus 91 ~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~g~~ 166 (216)
T 2qfj_A 91 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAF----GKIKSATLARDPTTGKH 166 (216)
T ss_dssp SSCCCC-CCCEEECCSCCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTS----SCEEEEEEEECTTTCCE
T ss_pred cCCeeCCeeEEEecCCCccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhcc----CCeeEEEEEecCCCCCc
Confidence 9999999999999876532111000 00012345899999999999999999999999 99999999999989999
Q ss_pred ccEEEEEeccccccc
Q 015974 382 KGIAYVLFKTRDNWI 396 (397)
Q Consensus 382 kGfAFV~F~s~e~A~ 396 (397)
+|||||+|.+.++|.
T Consensus 167 ~g~afV~F~~~~~A~ 181 (216)
T 2qfj_A 167 KGYGFIEYEKAQSSQ 181 (216)
T ss_dssp EEEEEEEESSHHHHH
T ss_pred CceEEEEecCHHHHH
Confidence 999999999998874
No 9
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.94 E-value=9.8e-27 Score=205.29 Aligned_cols=137 Identities=22% Similarity=0.445 Sum_probs=121.4
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhccc----C-------CeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEec
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKF----G-------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~----G-------~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~ 292 (397)
+.++|||+|||+.+|+++|+++|+.| | .|.++.+ +.++|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~-----------------------~~~~g~afV~f~ 59 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----------------------NQDKNFAFLEFR 59 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEE-----------------------ETTTTEEEEEES
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEe-----------------------cCCCCEEEEEeC
Confidence 47899999999999999999999999 6 5555544 235699999999
Q ss_pred CHHHHHHHHHhcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEE
Q 015974 293 SEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRV 372 (397)
Q Consensus 293 s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri 372 (397)
+.++|..|+.+|+..+.|+.|.|.++..... ....++|||+|||..+++++|+++|++| |.|..|+|
T Consensus 60 ~~~~A~~A~~~~~~~~~g~~i~v~~~~~~~~---------~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i 126 (172)
T 2g4b_A 60 SVDETTQAMAFDGIIFQGQSLKIRRPHDYQP---------LPGAHKLFIGGLPNYLNDDQVKELLTSF----GPLKAFNL 126 (172)
T ss_dssp SHHHHHHHGGGTTCEETTEECEEECCSSCCC---------CTTTTCEEEECCCTTCCHHHHHHHHHTT----SCEEEEEE
T ss_pred CHHHHHHHHHhCCcEecCceeeecCCcccCC---------CCCCCEEEEEcCCCcCCHHHHHHHHHhc----CCceEEEE
Confidence 9999999999999999999999998764321 2236899999999999999999999999 99999999
Q ss_pred eeCCCCCCCccEEEEEeccccccc
Q 015974 373 IRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 373 ~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+++..+|.++|||||+|.+.++|.
T Consensus 127 ~~~~~~g~~~g~afV~f~~~~~A~ 150 (172)
T 2g4b_A 127 VKDSATGLSKGYAFCEYVDINVTD 150 (172)
T ss_dssp EECTTTCSEEEEEEEEESSTTHHH
T ss_pred EecCCCCCcceEEEEEeCCHHHHH
Confidence 999888999999999999999875
No 10
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.94 E-value=2.5e-26 Score=207.10 Aligned_cols=146 Identities=21% Similarity=0.399 Sum_probs=122.2
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccC-----------CeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEec
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG-----------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G-----------~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~ 292 (397)
..++|||+|||+.+|+++|+++|+.|| .|..+.+ +.++|||||+|.
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~-----------------------~~~~g~afV~F~ 59 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI-----------------------NQDKNFAFLEFR 59 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE-----------------------ETTTTEEEEEES
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe-----------------------cCCCCEEEEEeC
Confidence 478999999999999999999999995 3443333 346799999999
Q ss_pred CHHHHHHHHHhcCceecceeeEEecCCCCccccCCC-----------CCCccccccceecCCCCccCcHHHHHHHhccCC
Q 015974 293 SEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGE-----------DAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLN 361 (397)
Q Consensus 293 s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~~~~-----------~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~ 361 (397)
+.++|..||.|||..|.|+.|.|.++.......... ......+.++|||+|||+.+++++|+++|+.|
T Consensus 60 ~~~~A~~Al~l~g~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~- 138 (198)
T 2yh0_A 60 SVDETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSF- 138 (198)
T ss_dssp CSHHHHHHGGGTTEEETTEEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTB-
T ss_pred CHHHHHHHHHhcCCEEcCceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHc-
Confidence 999999999999999999999999986532211100 01112457899999999999999999999999
Q ss_pred CCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 362 DLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 362 ~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
|.|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 139 ---G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~ 170 (198)
T 2yh0_A 139 ---GPLKAFNLVKDSATGLSKGYAFCEYVDINVTD 170 (198)
T ss_dssp ---SCEEEEEEEECTTTCSEEEEEEEEESSSSHHH
T ss_pred ---CCccEEEEeecCCCCCcceEEEEEECCHHHHH
Confidence 99999999999888999999999999998874
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.93 E-value=8.6e-26 Score=209.01 Aligned_cols=145 Identities=12% Similarity=0.205 Sum_probs=120.2
Q ss_pred ccCEEEEecCC-CCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 224 LLRTIFVGNLP-LKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 224 ~~rtVFVgNLp-~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
+.++|||+||| +.+|+++|+.+|+.||.|.+|+|+.+ ++|||||+|.+.++|..||
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~Ai~ 60 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS----------------------KPGAAMVEMADGYAVDRAIT 60 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT----------------------STTCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC----------------------CCCEEEEEECCHHHHHHHHH
Confidence 46899999999 89999999999999999999988431 3589999999999999999
Q ss_pred HhcCceecceeeEEecCCCCccccCC-----C-----------------------CCCccccccceecCCCCccCcHHHH
Q 015974 302 AFNMAVIGGNHIRLDRACPPRKKLKG-----E-----------------------DAPLYDIKKTVFVGNLPFDVKDEEI 353 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~~~~-----~-----------------------~~~~~~~~~tLfVgNLp~~vteedL 353 (397)
.|||..|.|+.|.|.++......... . ......++++|||+|||+.+++++|
T Consensus 61 ~lng~~~~g~~l~v~~s~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L 140 (205)
T 3tyt_A 61 HLNNNFMFGQKMNVCVSKQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENF 140 (205)
T ss_dssp HHTTCEETTEECEEEECSCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHH
T ss_pred HhCCCEECCceEEEEEccCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHH
Confidence 59999999999999998643210000 0 0001235678999999999999999
Q ss_pred HHHhccCCCCCCCe--EEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 354 YQLFCGLNDLESSV--EAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 354 ~~~F~~f~~~~G~I--~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+++|++| |.| ..|+|+.+. +.++|||||+|.+.++|.
T Consensus 141 ~~~F~~~----G~v~~~~v~~~~~~--~~~~g~gfV~f~~~~~A~ 179 (205)
T 3tyt_A 141 FEICDEL----GVKRPTSVKVFSGK--SERSSSGLLEWDSKSDAL 179 (205)
T ss_dssp HHHHHHH----TCCCCSEEEECSCC--SSSSEEEEEECSSHHHHH
T ss_pred HHHHHhc----CCcceEEEEEEcCC--CCCceEEEEEeCCHHHHH
Confidence 9999999 888 899998874 566799999999998874
No 12
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.93 E-value=9.4e-26 Score=216.65 Aligned_cols=135 Identities=21% Similarity=0.282 Sum_probs=115.0
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|.+|+|+.++. .++|||||+|.+.++|..||
T Consensus 38 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~-------------------~~~g~afV~f~~~~~A~~A~ 98 (292)
T 2ghp_A 38 NRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLK-------------------KNFRFARIEFARYDGALAAI 98 (292)
T ss_dssp ----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTT-------------------SSSEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCC-------------------CCcEEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999976531 24699999999999999999
Q ss_pred HhcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCC-CeEEEEEeeCCCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLES-SVEAVRVIRHPHMRV 380 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G-~I~~Vri~rd~~tg~ 380 (397)
.+++..|.|+.|.|.++. .++|||+|||+.+++++|+++|+.| | .|..|+|+++.. |.
T Consensus 99 ~~~~~~~~g~~i~v~~~~----------------~~~l~v~nlp~~~t~~~l~~~f~~~----G~~i~~v~i~~~~~-~~ 157 (292)
T 2ghp_A 99 TKTHKVVGQNEIIVSHLT----------------ECTLWMTNFPPSYTQRNIRDLLQDI----NVVALSIRLPSLRF-NT 157 (292)
T ss_dssp TTTTCEETTEECEEEECC----------------SCEEEEECCCTTCCHHHHHHHHHHT----TCCCCEEECC-------
T ss_pred HhCCcEeCCcEEEEEECC----------------CCEEEEECCCCCCCHHHHHHHHHHh----CCCeEEEEEEeCCC-CC
Confidence 999999999999999863 4799999999999999999999999 9 999999999976 88
Q ss_pred CccEEEEEeccccccc
Q 015974 381 GKGIAYVLFKTRDNWI 396 (397)
Q Consensus 381 ~kGfAFV~F~s~e~A~ 396 (397)
++|||||+|.+.++|.
T Consensus 158 ~~g~afV~f~~~~~a~ 173 (292)
T 2ghp_A 158 SRRFAYIDVTSKEDAR 173 (292)
T ss_dssp -CCEEEEECSSHHHHH
T ss_pred cceEEEEEECCHHHHH
Confidence 9999999999998874
No 13
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.93 E-value=2.3e-25 Score=212.20 Aligned_cols=132 Identities=23% Similarity=0.310 Sum_probs=121.1
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+++|+++|+.+|+.||.|..|.|.. ++|||||.|.+.++|..|+
T Consensus 19 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~-----------------------~kg~afV~f~~~~~A~~A~ 75 (261)
T 3sde_A 19 YTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR-----------------------DRGFGFIRLESRTLAEIAK 75 (261)
T ss_dssp SCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET-----------------------TTTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCcEEEEEECCHHHHHHHH
Confidence 34568999999999999999999999999999998832 4589999999999999999
Q ss_pred -HhcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCC
Q 015974 302 -AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV 380 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~ 380 (397)
.+||..|.|+.|.|.++.+ ..+|||+|||+.+|+++|+++|+.| |.|..|.|+++ .+|.
T Consensus 76 ~~l~g~~i~g~~l~v~~a~~---------------~~~l~v~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~-~~g~ 135 (261)
T 3sde_A 76 AELDGTILKSRPLRIRFATH---------------GAALTVKNLSPVVSNELLEQAFSQF----GPVEKAVVVVD-DRGR 135 (261)
T ss_dssp HHHTTCEETTEECEEEECCC---------------SSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEE-TTSC
T ss_pred HHcCCcEECCceeEeeeccc---------------CCcccccCCCCCCCHHHHHHHHHhc----CCeEEEEeeeC-CCCC
Confidence 5999999999999999863 4689999999999999999999999 99999999999 5799
Q ss_pred CccEEEEEeccccccc
Q 015974 381 GKGIAYVLFKTRDNWI 396 (397)
Q Consensus 381 ~kGfAFV~F~s~e~A~ 396 (397)
++|||||+|.+.++|.
T Consensus 136 ~~g~afV~f~~~~~A~ 151 (261)
T 3sde_A 136 ATGKGFVEFAAKPPAR 151 (261)
T ss_dssp EEEEEEEEESSHHHHH
T ss_pred cCcEEEEEeCCHHHHH
Confidence 9999999999998874
No 14
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.93 E-value=5.8e-26 Score=201.46 Aligned_cols=141 Identities=21% Similarity=0.327 Sum_probs=119.3
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|..||.|..+.++ +..++.++|||||+|.+.++|..||
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~------------------~~~~~~~~g~afV~f~~~~~a~~A~ 71 (175)
T 1fje_B 10 STTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVV------------------DVRTGTNRKFGYVDFESAEDLEKAL 71 (175)
T ss_dssp CSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCC------------------EEEEETTTTEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEE------------------ECCCCccccEEEEEECCHHHHHHHH
Confidence 4557999999999999999999999999987652221 1134567899999999999999999
Q ss_pred HhcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVG 381 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~ 381 (397)
+|||..|.|+.|.|.++.+... ......++|||+|||+.+++++|+++|+.| |.|..+ ..+|.+
T Consensus 72 ~l~g~~~~g~~l~v~~~~~~~~-------~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~----g~v~~~-----~~~~~~ 135 (175)
T 1fje_B 72 ELTGLKVFGNEIKLEKPKGRDS-------KKVRAARTLLAKNLSFNITEDELKEVFEDA----LEIRLV-----SQDGKS 135 (175)
T ss_dssp HGGGEEETTEEEEEECCCCSSC-------STTGGGGEEEEESCCSSCCHHHHHHHCTTC----SEEEEE-----CSSSSC
T ss_pred hcCCCEeCCeEEEEecCCCccc-------cccccCCEEEEeCCCCCCCHHHHHHHHHhc----CeEEEe-----cCCCCC
Confidence 9999999999999999976432 123456899999999999999999999999 877766 456899
Q ss_pred ccEEEEEeccccccc
Q 015974 382 KGIAYVLFKTRDNWI 396 (397)
Q Consensus 382 kGfAFV~F~s~e~A~ 396 (397)
+|||||+|.+.++|.
T Consensus 136 ~g~afV~f~~~~~A~ 150 (175)
T 1fje_B 136 KGIAYIEFKSEADAE 150 (175)
T ss_dssp CSEEEEECSSHHHHH
T ss_pred ceEEEEEECCHHHHH
Confidence 999999999998874
No 15
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=1.3e-24 Score=207.98 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=127.2
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.++|||+|||+.+|+++|+.+|+.||.|..|+++.++ .+|.++|||||.|.+.++|..|+ .+
T Consensus 95 ~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~~~l 157 (284)
T 3smz_A 95 DALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSE-----------------RTGQSKGYGFAEYMKKDSAARAKSDL 157 (284)
T ss_dssp SCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-----------------TTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeC-----------------CCCccceEEEEEECCHHHHHHHHHHh
Confidence 5789999999999999999999999999999987653 23557799999999999999999 79
Q ss_pred cCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccC-cHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCc
Q 015974 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDV-KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGK 382 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~v-teedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~k 382 (397)
+|..+.|+.|.|.++.+.... ......++|||+|||+.+ ++++|+++|+.| |.|..|+|+++. +|.++
T Consensus 158 ~~~~~~g~~i~v~~a~~~~~~------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~----G~i~~v~i~~~~-~g~~~ 226 (284)
T 3smz_A 158 LGKPLGPRTLYVHWTDAGQLT------PALLHSRCLCVDRLPPGFNDVDALCRALSAV----HSPTFCQLACGQ-DGQLK 226 (284)
T ss_dssp TTCEETTEECEEEECCGGGCC------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSS----SCCSEEEEEECS-SCCEE
T ss_pred CCCEeCCcEEEEEECCCCCCC------cccCCccEEEEecCCcccCCHHHHHHHhhCC----CCeEEEEEEECC-CCCcc
Confidence 999999999999999764321 123456899999999995 999999999999 999999999996 69999
Q ss_pred cEEEEEeccccccc
Q 015974 383 GIAYVLFKTRDNWI 396 (397)
Q Consensus 383 GfAFV~F~s~e~A~ 396 (397)
|||||.|.+.++|.
T Consensus 227 g~afV~f~~~~~A~ 240 (284)
T 3smz_A 227 GFAVLEYETAEMAE 240 (284)
T ss_dssp EEEEEECSSHHHHH
T ss_pred cEEEEEeCCHHHHH
Confidence 99999999998874
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.92 E-value=1.6e-24 Score=207.25 Aligned_cols=129 Identities=16% Similarity=0.277 Sum_probs=119.0
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.++|||+|||+.+|+++|+.+|+.|| |.+|.+ +.++|||||.|.+.++|..|+ .+
T Consensus 22 ~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~-----------------------~~~~g~afV~f~~~~~A~~A~~~l 77 (284)
T 3smz_A 22 RRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV-----------------------DKYKGTAFVTLLNGEQAEAAINAF 77 (284)
T ss_dssp CCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE-----------------------ETTTTEEEEEESSHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE-----------------------ecCCCEEEEEeCCHHHHHHHHHHc
Confidence 68899999999999999999999999 888876 135699999999999999999 69
Q ss_pred cCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCcc
Q 015974 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKG 383 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kG 383 (397)
||..+.|+.|.|.++.+ .++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|
T Consensus 78 ~~~~~~g~~i~v~~~~~---------------~~~l~v~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g 138 (284)
T 3smz_A 78 HQSRLRERELSVQLQPT---------------DALLCVANLPPSLTQQQFEELVRPF----GSLERCFLVYSERTGQSKG 138 (284)
T ss_dssp TTCEETTEECEEEECCC---------------SCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEE
T ss_pred CCCeeCCeEEEEEecCC---------------CCEEEEcCCCCcCCHHHHHHHHHhc----CCeeEEEEEeeCCCCccce
Confidence 99999999999998642 3799999999999999999999999 9999999999998999999
Q ss_pred EEEEEeccccccc
Q 015974 384 IAYVLFKTRDNWI 396 (397)
Q Consensus 384 fAFV~F~s~e~A~ 396 (397)
||||+|.+.++|.
T Consensus 139 ~afV~f~~~~~a~ 151 (284)
T 3smz_A 139 YGFAEYMKKDSAA 151 (284)
T ss_dssp EEEEEESSHHHHH
T ss_pred EEEEEECCHHHHH
Confidence 9999999998874
No 17
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.92 E-value=7.8e-25 Score=210.22 Aligned_cols=149 Identities=17% Similarity=0.247 Sum_probs=122.4
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccC-CeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G-~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
..++|||+|||+.+|+++|+.+|+.|| .|..|+|+.+. .+.++|||||.|.+.++|..|+.
T Consensus 116 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~------------------~~~~~g~afV~f~~~~~a~~A~~ 177 (292)
T 2ghp_A 116 TECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLR------------------FNTSRRFAYIDVTSKEDARYCVE 177 (292)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------------------------CCEEEEECSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCC------------------CCCcceEEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999 99999986543 13467999999999999999995
Q ss_pred -hcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCcc-CcHHHHHHHhccCCCCCCCeEEEEEeeCCC-CC
Q 015974 303 -FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPH-MR 379 (397)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~-vteedL~~~F~~f~~~~G~I~~Vri~rd~~-tg 379 (397)
|||..+.|+.|.|.++.+....... .....+.++|||+|||+. +++++|+++|+.| |.|..|+|+++.. ||
T Consensus 178 ~l~g~~~~g~~l~v~~a~~~~~~~~~--~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~tg 251 (292)
T 2ghp_A 178 KLNGLKIEGYTLVTKVSNPLEKSKRT--DSATLEGREIMIRNLSTELLDENLLRESFEGF----GSIEKINIPAGQKEHS 251 (292)
T ss_dssp HHTTCEETTEECEEEECCCC-----------CCTTTEEEEEEECTTTCCHHHHHHHHGGG----SCEEEEECCSCCC---
T ss_pred HhCCCEeCCcEEEEEECCCCcccccc--cccCCCCceEEEECCCcccCCHHHHHHHHhcc----CCeeEEEEEecCCcCC
Confidence 9999999999999999865433221 122345689999999999 9999999999999 9999999999876 69
Q ss_pred CCccEEEEEeccccccc
Q 015974 380 VGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 380 ~~kGfAFV~F~s~e~A~ 396 (397)
.++|||||+|.+.++|.
T Consensus 252 ~~~g~afV~F~~~~~A~ 268 (292)
T 2ghp_A 252 FNNCCAFMVFENKDSAE 268 (292)
T ss_dssp CCCEEEEEEESSHHHHH
T ss_pred CCceEEEEEeCCHHHHH
Confidence 99999999999998874
No 18
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.91 E-value=6.7e-24 Score=202.73 Aligned_cols=146 Identities=23% Similarity=0.314 Sum_probs=120.0
Q ss_pred CCccCEEEEecCCCCCcHHHHH----HHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~----~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A 297 (397)
....++|||+|||+.+|+++|+ ++|+.||.|.+|+|+. ++.++|||||+|.+.++|
T Consensus 6 ~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~--------------------~~~~~g~afV~f~~~~~a 65 (282)
T 3pgw_A 6 TRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR--------------------SLKMRGQAFVIFKEVSSA 65 (282)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC--------------------CCCcceEEEEEECCHHHH
Confidence 3457999999999999999966 8999999999998743 245679999999999999
Q ss_pred HHHH-HhcCceecceeeEEecCCCCcccc---CC----------------------------------------------
Q 015974 298 EAAL-AFNMAVIGGNHIRLDRACPPRKKL---KG---------------------------------------------- 327 (397)
Q Consensus 298 ~~Al-~lng~~l~Gr~I~V~~a~~~~k~~---~~---------------------------------------------- 327 (397)
..|| .|||..|.|+.|.|.++....... .+
T Consensus 66 ~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (282)
T 3pgw_A 66 TNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMP 145 (282)
T ss_pred HHHHHHhcCCeeCCcEEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCC
Confidence 9999 799999999999999885432100 00
Q ss_pred -----------------------------------------------------CCCCccccccceecCCCCccCcHHHHH
Q 015974 328 -----------------------------------------------------EDAPLYDIKKTVFVGNLPFDVKDEEIY 354 (397)
Q Consensus 328 -----------------------------------------------------~~~~~~~~~~tLfVgNLp~~vteedL~ 354 (397)
.......+.++|||+|||..+++++|+
T Consensus 146 ~~~~~~~~~~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 225 (282)
T 3pgw_A 146 PMTQAPRIMHHMPGQPPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLS 225 (282)
T ss_pred cccccccccccCCCCCCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHH
Confidence 000112246789999999999999999
Q ss_pred HHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 355 QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 355 ~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
++|+.| |.|..|+|+.+. +|||||+|.+.++|.
T Consensus 226 ~~F~~~----G~i~~v~~~~~~-----~g~afV~f~~~~~A~ 258 (282)
T 3pgw_A 226 MLFNQF----PGFKEVRLVPGR-----HDIAFVEFDNEVQAG 258 (282)
T ss_pred HHHHhc----CCeEEEEEecCC-----CcEEEEEeCCHHHHH
Confidence 999999 999999998763 589999999998874
No 19
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.90 E-value=8.6e-24 Score=191.57 Aligned_cols=141 Identities=18% Similarity=0.302 Sum_probs=117.8
Q ss_pred cCEEEEecCCC-CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 225 LRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 225 ~rtVFVgNLp~-~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
.++|||+|||+ .+|+++|+.+|+.||.|.+|+++.+ .+|||||+|.+.++|..|+ .
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~~ 60 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN----------------------KKENALVQMADGNQAQLAMSH 60 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTT----------------------CSSCCEEECTTTHHHHHHHHH
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeC----------------------CCCEEEEEECCHHHHHHHHHH
Confidence 58999999999 9999999999999999999988442 1489999999999999999 5
Q ss_pred hcCceecceeeEEecCCCCccccCC--------------------------CCCCccccccceecCCCCccCcHHHHHHH
Q 015974 303 FNMAVIGGNHIRLDRACPPRKKLKG--------------------------EDAPLYDIKKTVFVGNLPFDVKDEEIYQL 356 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~--------------------------~~~~~~~~~~tLfVgNLp~~vteedL~~~ 356 (397)
|||..+.|+.|.|.++.+....... .......+.++|||+|||..+++++|+++
T Consensus 61 l~~~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~ 140 (198)
T 1qm9_A 61 LNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVL 140 (198)
T ss_dssp HTTCCCSSCCCEEEECCCCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHH
T ss_pred hCCCeecCeEEEEEEecCCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHH
Confidence 9999999999999998643111000 00011345789999999999999999999
Q ss_pred hccCCCCCC-CeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 357 FCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 357 F~~f~~~~G-~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
|+.| | .|..|+|+.+ .+|||||+|.+.++|.
T Consensus 141 f~~~----G~~v~~v~i~~~-----~~g~afV~f~~~~~A~ 172 (198)
T 1qm9_A 141 FSSN----GGVVKGFKFFQK-----DRKMALIQMGSVEEAV 172 (198)
T ss_dssp HHHT----TSCCCEEEESST-----TSSCEEEECSSHHHHH
T ss_pred HHHc----CCCceEEEEEeC-----CCcEEEEEeCCHHHHH
Confidence 9999 8 9999999765 2789999999998874
No 20
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.90 E-value=2.4e-23 Score=194.34 Aligned_cols=143 Identities=17% Similarity=0.291 Sum_probs=118.7
Q ss_pred CccCEEEEecCCC-CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 223 KLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~-~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
...++|||+|||+ .+|+++|+++|+.||.|.+|+|+.+. +|||||+|.+.++|..|+
T Consensus 32 ~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~----------------------~g~afV~F~~~~~A~~Ai 89 (229)
T 2adc_A 32 AGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK----------------------KENALVQMADGNQAQLAM 89 (229)
T ss_dssp CCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT----------------------SCCEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC----------------------CCEEEEEECCHHHHHHHH
Confidence 3478999999999 99999999999999999999985431 489999999999999999
Q ss_pred -HhcCceecceeeEEecCCCCccccCC------------------C---C-----CCccccccceecCCCCccCcHHHHH
Q 015974 302 -AFNMAVIGGNHIRLDRACPPRKKLKG------------------E---D-----APLYDIKKTVFVGNLPFDVKDEEIY 354 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~k~~~~------------------~---~-----~~~~~~~~tLfVgNLp~~vteedL~ 354 (397)
.|||..|.|+.|.|.++.+....... . . .....+.++|||+|||..+++++|+
T Consensus 90 ~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~ 169 (229)
T 2adc_A 90 SHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLK 169 (229)
T ss_dssp HHHTTCBCSSSBCEEECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHH
T ss_pred HHhCCCeECCeEEEEEEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHH
Confidence 59999999999999998643110000 0 0 0112346899999999999999999
Q ss_pred HHhccCCCCCC-CeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 355 QLFCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 355 ~~F~~f~~~~G-~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
++|+.| | .|..|+|+.+ .+|||||+|.+.++|.
T Consensus 170 ~~f~~~----G~~i~~v~i~~~-----~~g~afV~f~~~~~A~ 203 (229)
T 2adc_A 170 VLFSSN----GGVVKGFKFFQK-----DRKMALIQMGSVEEAV 203 (229)
T ss_dssp HHHHTT----SCCEEEEEECSS-----STTCEEEEESSHHHHH
T ss_pred HHHHHc----CCCeeEEEEEEC-----CCcEEEEEECCHHHHH
Confidence 999999 9 9999999664 3789999999998874
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.83 E-value=1.1e-20 Score=158.85 Aligned_cols=108 Identities=18% Similarity=0.267 Sum_probs=71.3
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
..+|||+|||+.+|+++|+++|+.||.|.+|+|+++. +.++|||||+|.+.++|..|| .|
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~-------------------~~~kg~afV~f~~~~~A~~Ai~~l 65 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-------------------NGSKGYGFVHFETQEAAERAIEKM 65 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-------------------TEEEEEEEEEESCHHHHHHHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecC-------------------CCCCceEEEEECCHHHHHHHHHHc
Confidence 5689999999999999999999999999999997653 235699999999999999999 69
Q ss_pred cCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHH
Q 015974 304 NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEE 352 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteed 352 (397)
|+..|.|+.|.|.++.+....... .........+|||+|||+++|++-
T Consensus 66 ~~~~~~g~~i~V~~a~~~~~~~~~-~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 66 NGMLLNDRKVFVGRFKSRKEREAE-LGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp TTCEETTEECEEEESSCCCC-----------------------------
T ss_pred CCCEECCEEEEEEECCCccccccc-cccccCCCCceEeCCCCCCccccc
Confidence 999999999999998754322111 111223346799999999999863
No 22
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.75 E-value=4.1e-18 Score=139.74 Aligned_cols=80 Identities=18% Similarity=0.284 Sum_probs=72.3
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
+.++|||+|||+++|+++|+++|+.||.|.+|+|++++ .+|.++|||||+|.+.++|..|+ .
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-----------------~tg~~kG~afV~f~~~~~A~~Ai~~ 80 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDK-----------------VAGHSLGYGFVNYVTAKDAERAINT 80 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECS-----------------SSCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecC-----------------CCCcccccEEEEECCHHHHHHHHHH
Confidence 35789999999999999999999999999999997754 24557799999999999999999 6
Q ss_pred hcCceecceeeEEecCCC
Q 015974 303 FNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (397)
|||..|.|+.|.|.++.|
T Consensus 81 lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 81 LNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp HTTCEETTEECEEEECCB
T ss_pred hCCCEECCEEEEEEEeeC
Confidence 999999999999999864
No 23
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.71 E-value=9.8e-18 Score=135.20 Aligned_cols=81 Identities=14% Similarity=0.206 Sum_probs=70.2
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccC-CeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH-
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G-~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (397)
+++|||+|||+.+|+++|+++|+.|| .|.+|+|++++ .+|.++|||||+|.+.++|.+||.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~-----------------~t~~~rg~aFV~F~~~~~A~~Ai~~ 63 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNK-----------------SSGQSRGFAFVEFSHLQDATRWMEA 63 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCS-----------------SSCCCSSEEEEECSSHHHHHHHHHT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecC-----------------CCCCcCceEEEEecCHHHHHHHHHh
Confidence 47899999999999999999999999 79999886543 345677999999999999999995
Q ss_pred h-cCceecceeeEEecCCCCc
Q 015974 303 F-NMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 303 l-ng~~l~Gr~I~V~~a~~~~ 322 (397)
+ ++..+.|++|.|.++.++.
T Consensus 64 ~~~~~~~~gr~i~V~~a~~~~ 84 (91)
T 2lxi_A 64 NQHSLNILGQKVSMHYSDPKP 84 (91)
T ss_dssp TTTEEEETTEEEEEECCCSCC
T ss_pred cCCCeEECCEEEEEEEcCCCC
Confidence 5 4667999999999998653
No 24
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.70 E-value=2.6e-17 Score=137.22 Aligned_cols=101 Identities=18% Similarity=0.284 Sum_probs=88.5
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH-
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (397)
..++|||+|||+.+|+++|+.+|+.||.|.+|.|+.+ +.++|||||+|.+.++|..|+.
T Consensus 7 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~--------------------~~~~g~afV~f~~~~~A~~A~~~ 66 (115)
T 3lqv_A 7 VNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT--------------------PETRGTAYVVYEDIFDAKNAVDH 66 (115)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS--------------------TTTTTCEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--------------------CCCCcEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999998542 2346999999999999999995
Q ss_pred hcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCC
Q 015974 303 FNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLN 361 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~ 361 (397)
|||..|.|+.|.|.++.+... ..+++...++++|..+|+.||
T Consensus 67 l~g~~~~g~~l~v~~a~~~~~-----------------~~~~~~~~~~~~l~~~~~~~g 108 (115)
T 3lqv_A 67 LSGFNVSNRYLVVLYYNANRA-----------------FQKMDTKKKEEQLKLLKEKYG 108 (115)
T ss_dssp HTTCBSSSCBCEEEECCHHHH-----------------TTTSCHHHHHHHHHHHHHHHC
T ss_pred cCCCEECCeEEEEEEecCChh-----------------hhhhhHhHhHHHHHHHHHHhC
Confidence 999999999999999975331 167888899999999999993
No 25
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.70 E-value=4.3e-17 Score=132.78 Aligned_cols=98 Identities=21% Similarity=0.368 Sum_probs=81.0
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hhc
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (397)
++|||+|||+.+|+++|+.+|+.||.|..|.++.+ ++|||||+|.+.++|..|+ .||
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~~~l~ 58 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN----------------------PPGFAFVEFEDPRDAEDAVRGLD 58 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS----------------------SSSEEEEECSSHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC----------------------CCCEEEEEECCHHHHHHHHHHHC
Confidence 47999999999999999999999999999988442 3489999999999999999 499
Q ss_pred CceecceeeEEecCCCCccccCCCCC-CccccccceecCCCC
Q 015974 305 MAVIGGNHIRLDRACPPRKKLKGEDA-PLYDIKKTVFVGNLP 345 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~k~~~~~~~-~~~~~~~tLfVgNLp 345 (397)
+..+.|+.|.|.++.+.......... .......+||||||+
T Consensus 59 g~~~~g~~l~V~~a~~~~~~~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 59 GKVICGSRVRVELSTGMPRRSRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp HSCSSSCCCEEEESSSCCCSSCCCSCCCSCCCCSCCCSCCCC
T ss_pred CCeECCcEEEEEEccCCCCcccCCCCCccccCCCceecCCCC
Confidence 99999999999999875433322221 223346899999996
No 26
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.70 E-value=6.6e-17 Score=135.19 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=73.9
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+++|++||.|.+|+|++++ .++.++|||||+|.+.++|..||
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~-----------------~tg~~rG~aFV~f~~~~~A~~Ai~ 66 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHP-----------------RTRKHLGLARVLFTSTRGAKETVK 66 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-----------------TTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECC-----------------CCCceeeEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999997764 24567799999999999999999
Q ss_pred HhcCceecceeeEEecCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (397)
.|||..|.|+.|.|.++...
T Consensus 67 ~lng~~~~gr~i~V~~a~~~ 86 (110)
T 3s8s_A 67 NLHLTSVMGNIIHAQLDIKG 86 (110)
T ss_dssp HHTTCEETTEECEEEECSTT
T ss_pred HhCCCEECCeEEEEEECCCC
Confidence 59999999999999998643
No 27
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.69 E-value=8.9e-17 Score=127.26 Aligned_cols=80 Identities=30% Similarity=0.424 Sum_probs=71.6
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||
T Consensus 8 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~ 70 (87)
T 3s7r_A 8 EEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP-----------------NTGRSRGFGFILFKDAASVEKVL 70 (87)
T ss_dssp CSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECT-----------------TTCCEEEEEEEEESSTHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecC-----------------CCCccccEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999997654 23556799999999999999999
Q ss_pred HhcCceecceeeEEecC
Q 015974 302 AFNMAVIGGNHIRLDRA 318 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a 318 (397)
.+++..|.|+.|.|.+|
T Consensus 71 ~~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 71 DQKEHRLDGRVIDPKKA 87 (87)
T ss_dssp HSSCEEETTEEEEEEEC
T ss_pred HhCCCEECCEEEEEEeC
Confidence 98999999999999875
No 28
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-16 Score=129.13 Aligned_cols=83 Identities=27% Similarity=0.418 Sum_probs=74.4
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||.
T Consensus 8 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~A~~ 70 (99)
T 2dgs_A 8 SKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDA-----------------EKQRPRGFGFITFEDEQSVDQAVN 70 (99)
T ss_dssp SSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCT-----------------TTCSCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----------------CCCCCCceEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999996653 234577999999999999999999
Q ss_pred hcCceecceeeEEecCCCCc
Q 015974 303 FNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (397)
+|+..|.|+.|.|.++.++.
T Consensus 71 ~~~~~~~g~~l~V~~a~~~~ 90 (99)
T 2dgs_A 71 MHFHDIMGKKVEVKRAEPRD 90 (99)
T ss_dssp HCCCBSSSCBCEEEECCCCC
T ss_pred hCCCEECCeEEEEEECCCCc
Confidence 99999999999999998654
No 29
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.69 E-value=1.2e-16 Score=125.16 Aligned_cols=79 Identities=20% Similarity=0.318 Sum_probs=71.3
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hhc
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (397)
.+|||+|||+.+|+++|+.+|+.||.|.+|+++.++ .++.++|||||+|.+.++|..|+ .||
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~a~~~l~ 64 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM-----------------QTGSSRGYGFVSFTSQDDAQNAMDSMQ 64 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECT-----------------TTCCEEEEEEEEESCHHHHHHHHHHHT
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcC-----------------CCCCccceEEEEECCHHHHHHHHHHhc
Confidence 589999999999999999999999999999997654 23456799999999999999999 599
Q ss_pred CceecceeeEEecCCCC
Q 015974 305 MAVIGGNHIRLDRACPP 321 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~~ 321 (397)
|..+.|+.|.|.++.++
T Consensus 65 g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 65 GQDLNGRPLRINWAAKL 81 (83)
T ss_dssp TCEETTEECEEEECCCC
T ss_pred CCeeCCcEEEEEecCcC
Confidence 99999999999999764
No 30
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=7.2e-17 Score=133.52 Aligned_cols=78 Identities=12% Similarity=0.140 Sum_probs=71.0
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHh
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (397)
..++|||+|||+++|+++|+++|+.||.|.+|+|++++ . +.++|||||+|.+.++|..||.+
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~-----------------~-g~~rG~aFV~F~~~e~a~~Ai~~ 71 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL-----------------H-KAFKGSIFVVFDSIESAKKFVET 71 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCC-----------------T-TSCCCEEEEEESSHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECC-----------------C-CCCccEEEEEECCHHHHHHHHHc
Confidence 46889999999999999999999999999999997653 1 45779999999999999999999
Q ss_pred cCceecceeeEEecCC
Q 015974 304 NMAVIGGNHIRLDRAC 319 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~ 319 (397)
++..|.|+.|.|.++.
T Consensus 72 ~~~~~~gr~l~V~~~~ 87 (103)
T 1s79_A 72 PGQKYKETDLLILFKD 87 (103)
T ss_dssp SCCCCTTTTCEEEEHH
T ss_pred CCCEECCEEEEEEEch
Confidence 9999999999999864
No 31
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.68 E-value=1.5e-16 Score=125.63 Aligned_cols=80 Identities=21% Similarity=0.358 Sum_probs=71.0
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+.+|+++|+.+|+.||.|.+|+++.++ .++.++|||||+|.+.++|..|+ .
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~A~~A~~~ 67 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDM-----------------ATGKSKGYGFVSFFNKWDAENAIQQ 67 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-----------------TTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC-----------------CCCccceEEEEEECCHHHHHHHHHH
Confidence 46889999999999999999999999999999997653 23456799999999999999999 5
Q ss_pred hcCceecceeeEEecCCC
Q 015974 303 FNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (397)
|||..+.|+.|.|.++.+
T Consensus 68 l~g~~~~g~~l~v~~a~~ 85 (87)
T 3bs9_A 68 MGGQWLGGRQIRTNWATR 85 (87)
T ss_dssp HTTCEETTEECEEEEEC-
T ss_pred cCCCEECCeEEEEEecCC
Confidence 999999999999999864
No 32
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-16 Score=127.64 Aligned_cols=84 Identities=15% Similarity=0.199 Sum_probs=74.4
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~A~~ 68 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDS-----------------LTKKPKGFAFVTFMFPEHAVKAYA 68 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCT-----------------TTCCCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecC-----------------CCCCcCeEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999886543 24557799999999999999999
Q ss_pred HhcCceecceeeEEecCCCCcc
Q 015974 302 AFNMAVIGGNHIRLDRACPPRK 323 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k 323 (397)
.||+..|.|+.|.|.++.++..
T Consensus 69 ~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 69 EVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp HTTTEESSSCEEEEEECCCCST
T ss_pred HhCCCEECCcEEEEEEcCCCcc
Confidence 7999999999999999987543
No 33
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.68 E-value=2.5e-16 Score=132.45 Aligned_cols=84 Identities=23% Similarity=0.326 Sum_probs=74.1
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.+. ++.++|||||+|.+.++|..|+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~F~~~~~A~~Ai~ 66 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR------------------TSKSRGFAFITFENPADAKNAAK 66 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST------------------TTTCCCEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC------------------CCCcccEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999986542 3456799999999999999999
Q ss_pred HhcCceecceeeEEecCCCCccc
Q 015974 302 AFNMAVIGGNHIRLDRACPPRKK 324 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k~ 324 (397)
.|||..|.|+.|.|.++.++...
T Consensus 67 ~l~g~~~~g~~l~V~~a~~~~~~ 89 (116)
T 2fy1_A 67 DMNGKSLHGKAIKVEQAKKPSFQ 89 (116)
T ss_dssp HCSSCBCSSSBCEEEECCCSSCS
T ss_pred HhCCCEECCEEEEEEECCCCCCC
Confidence 59999999999999999875543
No 34
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.68 E-value=1.5e-16 Score=126.10 Aligned_cols=80 Identities=24% Similarity=0.361 Sum_probs=72.5
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhc
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (397)
.++|||+|||+.+|+++|+.+|+.||.|..|+++.++ .++.++|||||+|.+.++|..|+.+|
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~a~~~~ 68 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDK-----------------FSGHPKGFAYIEFSDKESVRTSLALD 68 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESC-----------------SSSSCCEEEEEEESSTHHHHHHGGGT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecC-----------------CCCCcceEEEEEECCHHHHHHHHhcC
Confidence 6889999999999999999999999999999997653 23456799999999999999999999
Q ss_pred CceecceeeEEecCCCC
Q 015974 305 MAVIGGNHIRLDRACPP 321 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~~ 321 (397)
+..|.|+.|.|.++.++
T Consensus 69 g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 69 ESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp TCEETTEECEEEETTTT
T ss_pred CCEECCcEEEEEEccCC
Confidence 99999999999998753
No 35
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.68 E-value=1.8e-16 Score=124.55 Aligned_cols=79 Identities=28% Similarity=0.444 Sum_probs=71.1
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+++|+.||.|..|.|+.++ .++.++|||||+|.+.++|..|+
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~A~~ 67 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY-----------------ETEKHRGFAFVEFELAEDAAAAID 67 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEET-----------------TTTEECSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECC-----------------CCCccccEEEEEECCHHHHHHHHH
Confidence 357899999999999999999999999999999986653 23456799999999999999999
Q ss_pred HhcCceecceeeEEecC
Q 015974 302 AFNMAVIGGNHIRLDRA 318 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a 318 (397)
.|||..|.|+.|.|.++
T Consensus 68 ~l~g~~~~g~~l~v~~a 84 (85)
T 3mdf_A 68 NMNESELFGRTIRVNLA 84 (85)
T ss_dssp HHTTCEETTEECEEEEC
T ss_pred HhCCCEECCcEEEEEEc
Confidence 69999999999999987
No 36
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=128.56 Aligned_cols=84 Identities=20% Similarity=0.222 Sum_probs=74.4
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~A~~A~ 74 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDK-----------------TTGQSKGFAFISFHRREDAARAI 74 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECS-----------------SSCSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecC-----------------CCCceeeEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999997654 23456799999999999999999
Q ss_pred H-hcCceecceeeEEecCCCCc
Q 015974 302 A-FNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~ 322 (397)
. ||+..|.|+.|.|.++.+..
T Consensus 75 ~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 75 AGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp HHTTTCEETTEECEEEESSCCC
T ss_pred HHcCCCeeCCcEEEEEECCCCC
Confidence 4 99999999999999997653
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.5e-16 Score=125.66 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=73.4
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH-
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (397)
..++|||+|||+.+|+++|+.+|+.||.|..|.|+.++ .++.++|||||+|.+.++|..||.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~A~~~ 66 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDS-----------------DTGRSKGYGFITFSDSECARRALEQ 66 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCS-----------------SSCCCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecC-----------------CCCceeeEEEEEECCHHHHHHHHHH
Confidence 47899999999999999999999999999999997653 234577999999999999999995
Q ss_pred hcCceecceeeEEecCCCCc
Q 015974 303 FNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (397)
||+..|.|+.|.|.++.++.
T Consensus 67 l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 67 LNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp HTTCCSSSSCCEEEESSCCC
T ss_pred hCCCeeCCcEEEEEEccccc
Confidence 99999999999999997653
No 38
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.67 E-value=4.1e-17 Score=130.61 Aligned_cols=79 Identities=14% Similarity=0.194 Sum_probs=67.6
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccC--CeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFG--EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G--~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
.+|||+|||+.+|+++|+++|+.|| .|.+|+|+.++ .+|.++|||||+|.+.++|..|| .
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~-----------------~~g~~kG~afV~f~~~~~a~~Ai~~ 64 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR-----------------ANGQSKGFALVGVGSEASSKKLMDL 64 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECT-----------------TTCCEEEEEEECC-CHHHHHHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecC-----------------CCCccCcEEEEEECCHHHHHHHHHH
Confidence 5799999999999999999999999 99999997754 24567799999999999999999 6
Q ss_pred hcCceecceeeEEecCCCC
Q 015974 303 FNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (397)
|||..|.|+.|.|.++.++
T Consensus 65 l~g~~~~gr~i~V~~~~~~ 83 (90)
T 3p5t_L 65 LPKRELHGQNPVVTPSNKL 83 (90)
T ss_dssp GGGSCSSSCCCEECCC---
T ss_pred cCCCeeCCEEEEEEECCCC
Confidence 9999999999999999864
No 39
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.67 E-value=5.8e-16 Score=128.99 Aligned_cols=84 Identities=20% Similarity=0.326 Sum_probs=74.5
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~A~ 74 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDM-----------------ATGKSKGYGFVSFFNKWDAENAI 74 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-----------------TTCCEEEEEEEEESSHHHHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC-----------------CCCCcceEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999997653 23456799999999999999999
Q ss_pred -HhcCceecceeeEEecCCCCc
Q 015974 302 -AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.||+..|.|+.|.|.++.+..
T Consensus 75 ~~l~g~~~~g~~l~V~~a~~~~ 96 (115)
T 2dgo_A 75 QQMGGQWLGGRQIRTNWATRKP 96 (115)
T ss_dssp HHTTTCEETTEECEEEESSCCC
T ss_pred HHhCCCEECCEEEEEEEccCCC
Confidence 599999999999999997653
No 40
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.67 E-value=7.4e-17 Score=132.01 Aligned_cols=82 Identities=16% Similarity=0.131 Sum_probs=73.4
Q ss_pred CccCEEEEecCCC------CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHH
Q 015974 223 KLLRTIFVGNLPL------KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQS 296 (397)
Q Consensus 223 ~~~rtVFVgNLp~------~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~ 296 (397)
...++|||+|||+ .+++++|+.+|++||.|.+|+|++++ .+|.++|||||+|.+.++
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~-----------------~tg~~kG~afV~f~~~~~ 66 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDE-----------------ATGKTKGFLFVECGSMND 66 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEET-----------------TTTEECSEEEEEESSHHH
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcC-----------------CCCccceEEEEEECCHHH
Confidence 3468999999999 99999999999999999999997764 245677999999999999
Q ss_pred HHHHH-HhcCceecc-eeeEEecCCCC
Q 015974 297 TEAAL-AFNMAVIGG-NHIRLDRACPP 321 (397)
Q Consensus 297 A~~Al-~lng~~l~G-r~I~V~~a~~~ 321 (397)
|..|| .|||..|.| +.|.|.++.+.
T Consensus 67 A~~Ai~~lng~~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 67 AKKIIKSFHGKRLDLKHRLFLYTMKDV 93 (100)
T ss_dssp HHHHHHHHTTCBSSSSCBCEEEESHHH
T ss_pred HHHHHHHhCCcccCCCeEEEEEECchh
Confidence 99999 699999999 99999998653
No 41
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.4e-16 Score=128.15 Aligned_cols=85 Identities=22% Similarity=0.340 Sum_probs=74.7
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~A~ 74 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDR-----------------VTGQHQGYGFVEFLSEEDADYAI 74 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCS-----------------SSCSBCSCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-----------------CCCcCCcEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999986543 23557799999999999999999
Q ss_pred H-hcCceecceeeEEecCCCCcc
Q 015974 302 A-FNMAVIGGNHIRLDRACPPRK 323 (397)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~k 323 (397)
. ||+..|.|+.|.|.++.+...
T Consensus 75 ~~l~g~~~~g~~l~v~~a~~~~~ 97 (105)
T 1x5u_A 75 KIMDMIKLYGKPIRVNKASAHNK 97 (105)
T ss_dssp HHSSSCBCSSCBCEEEETTTTSC
T ss_pred HHhCCCeECCeEEEEEECCCCCc
Confidence 4 999999999999999986543
No 42
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=130.95 Aligned_cols=80 Identities=15% Similarity=0.275 Sum_probs=69.2
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCC--eeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGE--IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~--I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
.-.||||+|||+.+|+++|+++|++||. |.+|++++++ .+|.++|||||+|.+.++|..||
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~-----------------~tg~srG~aFV~f~~~~~A~~Ai 70 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDK-----------------QTQQNRGFAFVQLSSAMDASQLL 70 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCS-----------------SSSSCSSEEEEECSSSHHHHHHH
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecC-----------------CCCCCceEeEEEECCHHHHHHHH
Confidence 4688999999999999999999999996 5678876654 34567899999999999999999
Q ss_pred -HhcCc----eecceeeEEecCCC
Q 015974 302 -AFNMA----VIGGNHIRLDRACP 320 (397)
Q Consensus 302 -~lng~----~l~Gr~I~V~~a~~ 320 (397)
.||+. .++||+|.|.+|..
T Consensus 71 ~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 71 QILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp HHHHSSSSCEEETTEEEEEEECCC
T ss_pred HHhcCCCCCceECCEEEEEEEccC
Confidence 58886 58999999999863
No 43
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.67 E-value=3e-16 Score=126.95 Aligned_cols=85 Identities=18% Similarity=0.237 Sum_probs=73.5
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH-
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (397)
..++|||+|||+.+|+++|+++|+.||.|..|+|+.++.. . .++.++|||||+|.+.++|..||.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~-~-------------gt~~~~g~afV~f~~~~~a~~A~~~ 69 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNK-A-------------GVLLSMGFGFVEYKKPEQAQKALKQ 69 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECT-T-------------CCEEEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC-C-------------CCcCcccEEEEEECCHHHHHHHHHH
Confidence 4688999999999999999999999999999999776420 0 023567999999999999999995
Q ss_pred hcCceecceeeEEecCCCCc
Q 015974 303 FNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (397)
||+..|.|+.|.|.++.+..
T Consensus 70 l~g~~~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 70 LQGHTVDGHKLEVRISERAT 89 (98)
T ss_dssp STTCEETTEECEEECSSCSS
T ss_pred hCCCeeCCeEEEEEEccCCC
Confidence 99999999999999997654
No 44
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.67 E-value=2.7e-16 Score=127.01 Aligned_cols=81 Identities=15% Similarity=0.336 Sum_probs=72.6
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
+++|||+|||+.+|+++|+.+|+.||.|.+|+|+.++ .+|.++|||||+|.+.++|..|+ .|
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~A~~Ai~~l 64 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDP-----------------QTGRSKGYAFIEFRDLESSASAVRNL 64 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT-----------------TTCCBCSEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCC-----------------CCCccceEEEEEECCHHHHHHHHHHh
Confidence 5789999999999999999999999999999986543 23457799999999999999999 69
Q ss_pred cCceecceeeEEecCCCCc
Q 015974 304 NMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~ 322 (397)
||..|.|+.|.|.++.++.
T Consensus 65 ~g~~~~g~~l~V~~a~~~~ 83 (96)
T 2x1f_A 65 NGYQLGSRFLKCGYSSNSD 83 (96)
T ss_dssp TTCEETTEECEEEECSCSS
T ss_pred CCCeECCeEEEEEEcCCCC
Confidence 9999999999999998643
No 45
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=2.6e-16 Score=128.17 Aligned_cols=84 Identities=29% Similarity=0.437 Sum_probs=74.3
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||
T Consensus 10 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~A~~A~~ 72 (102)
T 2cqb_A 10 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY-----------------ETEKHRGFAFVEFELAEDAAAAID 72 (102)
T ss_dssp CCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCS-----------------SSCCCSSEEEECCSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecC-----------------CCCCcceEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999886543 23457799999999999999999
Q ss_pred HhcCceecceeeEEecCCCCcc
Q 015974 302 AFNMAVIGGNHIRLDRACPPRK 323 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k 323 (397)
.||+..|.|+.|.|.++.++..
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2cqb_A 73 NMNESELFGRTIRVNLAKPMRI 94 (102)
T ss_dssp HHTTEEETTEEEEEEECCCCCC
T ss_pred HhCCCEECCcEEEEEeCCCCCC
Confidence 6999999999999999986543
No 46
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=4e-16 Score=127.83 Aligned_cols=83 Identities=28% Similarity=0.409 Sum_probs=73.4
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhcccc-CCCcceEEEEecCHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINE-NADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~-g~skG~AFV~F~s~e~A~~Al 301 (397)
...++|||+|||+.+|+++|+.+|+.|| |..|+|+.++ .+ +.++|||||+|.+.++|..||
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~-----------------~~~g~~~g~afV~f~~~~~a~~A~ 74 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREP-----------------SNPERLKGFGYAEFEDLDSLLSAL 74 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCS-----------------SCTTSBCSCEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCC-----------------CCCCCcCeEEEEEECCHHHHHHHH
Confidence 3468999999999999999999999999 9999986653 12 457799999999999999999
Q ss_pred HhcCceecceeeEEecCCCCcc
Q 015974 302 AFNMAVIGGNHIRLDRACPPRK 323 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k 323 (397)
.||+..|.|+.|.|.++.++..
T Consensus 75 ~l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 75 SLNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp GGGTCEETTEECEEEECCCCCC
T ss_pred hcCCCEeCCcEEEEEEccCCCC
Confidence 9999999999999999987543
No 47
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=3.9e-16 Score=125.22 Aligned_cols=81 Identities=21% Similarity=0.231 Sum_probs=72.2
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|.|+.++ .++.++|||||+|.+.++|..|+
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~A~~A~ 74 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ-----------------QSRRSRGFAFVYFENVDDAKEAK 74 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECS-----------------SSSSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcC-----------------CCCCcccEEEEEECCHHHHHHHH
Confidence 3457889999999999999999999999999999997654 23456799999999999999999
Q ss_pred -HhcCceecceeeEEecCC
Q 015974 302 -AFNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~ 319 (397)
.||+..|.|+.|.|.++.
T Consensus 75 ~~l~g~~~~g~~l~v~~a~ 93 (95)
T 2cqc_A 75 ERANGMELDGRRIRVSGPS 93 (95)
T ss_dssp HHHTTEEETTEEEEEECCS
T ss_pred HHhCCCEECCEEEEEEecC
Confidence 599999999999999985
No 48
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.66 E-value=5.3e-16 Score=126.86 Aligned_cols=82 Identities=26% Similarity=0.381 Sum_probs=73.3
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+.+|+.|| |..|+|+.++ .++.++|||||+|.+.++|..||.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~~ 74 (103)
T 2dng_A 13 EPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDK-----------------DTDKFKGFCYVEFDEVDSLKEALT 74 (103)
T ss_dssp SSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECS-----------------SSCSEEEEEEEEESSHHHHHHHGG
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecC-----------------CCCccceEEEEEECCHHHHHHHHh
Confidence 4468999999999999999999999997 9999997754 234567999999999999999999
Q ss_pred hcCceecceeeEEecCCCCc
Q 015974 303 FNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (397)
||+..|.|+.|.|.++.+..
T Consensus 75 l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dng_A 75 YDGALLGDRSLRVDIAEGRK 94 (103)
T ss_dssp GTTCEETTEECEEEECCCCC
T ss_pred hCCCeECCeEEEEEEecCCC
Confidence 99999999999999998653
No 49
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.1e-16 Score=126.19 Aligned_cols=82 Identities=27% Similarity=0.352 Sum_probs=73.0
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEE-EEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSV-RIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~I-ri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
..++|||+|||+.+|+++|+.+|+.||.|..| +|+.++ .++.++|||||+|.+.++|..||.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~-----------------~~g~~~g~afV~f~~~~~A~~A~~ 66 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDP-----------------DTGNSKGYAFINFASFDASDAAIE 66 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCT-----------------TTCSCCSEEEEEBSSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcC-----------------CCCCcCeEEEEEECCHHHHHHHHH
Confidence 46899999999999999999999999999988 886543 245577999999999999999995
Q ss_pred -hcCceecceeeEEecCCCCc
Q 015974 303 -FNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~ 322 (397)
||+..|.|+.|.|.++.++.
T Consensus 67 ~l~g~~~~g~~l~v~~a~~~~ 87 (96)
T 1x5t_A 67 AMNGQYLCNRPITVSYAFKKD 87 (96)
T ss_dssp TTTTCEETTEECEEEESCCCC
T ss_pred HcCCCEECCEEEEEEEecccC
Confidence 99999999999999998654
No 50
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.66 E-value=3.4e-16 Score=127.90 Aligned_cols=83 Identities=25% Similarity=0.373 Sum_probs=73.6
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++ .++.++|||||+|.+.++|..||.
T Consensus 11 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~A~~A~~ 73 (103)
T 2dnm_A 11 DGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREP-----------------HTKAPRGFAFVRFHDRRDAQDAEA 73 (103)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCS-----------------SSCSBCSCEEEEESSSSHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC-----------------CCCCCCeEEEEEECCHHHHHHHHH
Confidence 447899999999999999999999999999999886543 235577999999999999999995
Q ss_pred -hcCceecceeeEEecCCCCc
Q 015974 303 -FNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~ 322 (397)
||+..|.|+.|.|.++.+..
T Consensus 74 ~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dnm_A 74 AMDGAELDGRELRVQVARYGR 94 (103)
T ss_dssp HHSSCCBTTBCCEEEECSSCC
T ss_pred HcCCCEECCcEEEEEECCcCC
Confidence 99999999999999997643
No 51
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.66 E-value=1e-16 Score=123.37 Aligned_cols=75 Identities=21% Similarity=0.378 Sum_probs=67.7
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhcCc
Q 015974 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMA 306 (397)
Q Consensus 227 tVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~lng~ 306 (397)
+|||+|||+.+|+++|+.+|+.||.|..|+++.++ .++.++|||||+|.+.++|++|+.+|+.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~a~~~~~~ 63 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDK-----------------TTNRHRGFGFVTFESEDIVEKVCEIHFH 63 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCS-----------------SSTTSCBEEEEECSCHHHHHHHHSSSCC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecC-----------------CCCCcCcEEEEEECCHHHHHHHHHCCCC
Confidence 49999999999999999999999999999886543 2355779999999999999999999999
Q ss_pred eecceeeEEecC
Q 015974 307 VIGGNHIRLDRA 318 (397)
Q Consensus 307 ~l~Gr~I~V~~a 318 (397)
.|.|+.|.|.++
T Consensus 64 ~~~g~~l~v~~A 75 (75)
T 2mss_A 64 EINNKMVECKKA 75 (75)
T ss_dssp CSSSCCCEEECC
T ss_pred EECCEEEEEEeC
Confidence 999999999875
No 52
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.66 E-value=5.4e-16 Score=128.05 Aligned_cols=83 Identities=20% Similarity=0.375 Sum_probs=73.6
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~A~~A~~ 75 (111)
T 1x4h_A 13 TEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHP-----------------DTEHSKGCAFAQFMTQEAAQKCLA 75 (111)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCS-----------------SSCCBCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecC-----------------CCCCCccEEEEEECCHHHHHHHHH
Confidence 447889999999999999999999999999999986653 23456799999999999999999
Q ss_pred Hhc------CceecceeeEEecCCCCc
Q 015974 302 AFN------MAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 ~ln------g~~l~Gr~I~V~~a~~~~ 322 (397)
.+| +..|.|+.|.|.++.+..
T Consensus 76 ~~~~~~~~~~~~~~g~~l~v~~a~~~~ 102 (111)
T 1x4h_A 76 AASLEAEGGGLKLDGRQLKVDLAVTRD 102 (111)
T ss_dssp HHCTTTTTCCEESSSCEEEEECCCCCC
T ss_pred HhccccccCCcEEcCEEEEEEECCCCc
Confidence 598 999999999999998653
No 53
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.66 E-value=1.5e-16 Score=139.73 Aligned_cols=108 Identities=12% Similarity=0.108 Sum_probs=81.4
Q ss_pred CCcceEEEEecCHHHHHHHH-HhcCceecceeeEEec-------CCCCccccCCCCCCccccccceecCCCCccCcHHHH
Q 015974 282 ADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDR-------ACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEI 353 (397)
Q Consensus 282 ~skG~AFV~F~s~e~A~~Al-~lng~~l~Gr~I~V~~-------a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL 353 (397)
.++|||||+|.+.++|++|+ .+++....+..+.+.. ....... .........++|||+|||+.+++++|
T Consensus 11 ~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~l~v~nl~~~~~~~~l 87 (158)
T 2kn4_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHH---HHHMDVEGMTSLKVDNLTYRTSPDTL 87 (158)
T ss_dssp SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCS---SCCCCCCBCCEEEEESCCTTCCHHHH
T ss_pred cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccccccccccc---ccccCCCCCCEEEEeCCCCCCCHHHH
Confidence 47799999999999999999 4554322222222222 1111100 11122345689999999999999999
Q ss_pred HHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 354 YQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 354 ~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 88 ~~~F~~~----G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 126 (158)
T 2kn4_A 88 RRVFEKY----GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 126 (158)
T ss_dssp HHHHHHH----SCEEEEECCCCSSCTTSCCEEEEEESBHHHHH
T ss_pred HHHHHhc----CCeEEEEEeecCCCCccceEEEEEECCHHHHH
Confidence 9999999 99999999999989999999999999998874
No 54
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.66 E-value=4.4e-16 Score=129.43 Aligned_cols=84 Identities=20% Similarity=0.333 Sum_probs=71.6
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|.+|+|++++ .+|.++|||||+|.+.++|..||
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-----------------~tg~~kg~afV~f~~~~~A~~Ai 84 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP-----------------LTKRSRGFGFVTFMDQAGVDKVL 84 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCT-----------------TTCCCTTCEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECC-----------------CCCCcCcEEEEEECCHHHHHHHH
Confidence 3446889999999999999999999999999999986643 24567899999999999999999
Q ss_pred HhcCceecceeeEEecCCCCc
Q 015974 302 AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (397)
...+..|.|+.|.|.++.+..
T Consensus 85 ~~~~~~l~g~~l~V~~a~~~~ 105 (109)
T 2rs2_A 85 AQSRHELDSKTIDPKVAFPRR 105 (109)
T ss_dssp HSSCEEETTEEEEEEECCCCC
T ss_pred HHCCCcCCCEEEEEEEccCCC
Confidence 766799999999999997643
No 55
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=8.4e-16 Score=125.53 Aligned_cols=82 Identities=24% Similarity=0.409 Sum_probs=72.8
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.+. +.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-------------------~~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEH-------------------TSNDPYCFVEFYEHRDAAAAL 72 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCC-------------------CSSCCEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecC-------------------CCCCCEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999996642 124699999999999999999
Q ss_pred H-hcCceecceeeEEecCCCCc
Q 015974 302 A-FNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~ 322 (397)
. ||+..|.|+.|.|.++.++.
T Consensus 73 ~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2cqi_A 73 AAMNGRKILGKEVKVNWATTPS 94 (103)
T ss_dssp HHHTTEEETTEEEEEEECCCTT
T ss_pred HHhCCCCcCCCeEEEEECCCCc
Confidence 5 99999999999999998654
No 56
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=3.4e-16 Score=127.54 Aligned_cols=84 Identities=23% Similarity=0.410 Sum_probs=74.2
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDR-----------------ETQRSRGFGFVTFENIDDAKDAM 71 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCS-----------------SSCSCCSEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----------------CCCCcccEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999986543 23456799999999999999999
Q ss_pred -HhcCceecceeeEEecCCCCc
Q 015974 302 -AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.||+..|.|+.|.|.++.+..
T Consensus 72 ~~l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 72 MAMNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp HHHTTCCTTSCCCEEEEEECCC
T ss_pred HHhCCCEECCeEEEEEECCCCC
Confidence 799999999999999997654
No 57
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.66 E-value=3.5e-16 Score=123.58 Aligned_cols=82 Identities=21% Similarity=0.378 Sum_probs=71.8
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH-
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA- 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~- 302 (397)
..++|||+|||+.+|+++|+.+|+.||.|..|.|+.+.. ..+.++|||||+|.+.++|..|+.
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~----------------~~~~~~g~afV~f~~~~~a~~A~~~ 66 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERM----------------HPHLSKGYAYVEFENPDEAEKALKH 66 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETT----------------EEEEECSEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCC----------------CCCCCCcEEEEEEecHHHHHHHHHH
Confidence 368899999999999999999999999999999866541 112267999999999999999995
Q ss_pred hcCceecceeeEEecCCCC
Q 015974 303 FNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (397)
|||..|.|+.|.|.++.++
T Consensus 67 l~g~~~~g~~l~v~~a~~~ 85 (88)
T 4a8x_A 67 MDGGQIDGQEITATAVLAP 85 (88)
T ss_dssp HTTCEETTEECEEEEECCC
T ss_pred cCCCeECCeEEEEEECCCC
Confidence 9999999999999999764
No 58
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.5e-16 Score=124.26 Aligned_cols=80 Identities=25% Similarity=0.381 Sum_probs=71.2
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+++|+.||.|..|.|+.++ .++.++|||||+|.+.++|..|+
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~A~~A~ 75 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDK-----------------DTRKSKGVAFILFLDKDSAQNCT 75 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCS-----------------SSCCCTTCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----------------CCCCcccEEEEEECCHHHHHHHH
Confidence 3456889999999999999999999999999999986643 23456799999999999999999
Q ss_pred -HhcCceecceeeEEecC
Q 015974 302 -AFNMAVIGGNHIRLDRA 318 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a 318 (397)
.||+..|.|+.|.|.++
T Consensus 76 ~~l~g~~~~g~~l~v~~a 93 (94)
T 2e5h_A 76 RAINNKQLFGRVIKASIA 93 (94)
T ss_dssp HHTTTEEETTEEEEEEEC
T ss_pred HHcCCCeeCCcEEEEEec
Confidence 69999999999999986
No 59
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.66 E-value=5.4e-16 Score=129.30 Aligned_cols=83 Identities=18% Similarity=0.335 Sum_probs=74.0
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~~ 85 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDK-----------------QTNLSKCFGFVSYDNPVSAQAAIQ 85 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECS-----------------SSCSEEEEEEEECSSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-----------------CCCCcCccEEEEECCHHHHHHHHH
Confidence 346889999999999999999999999999999997654 23456799999999999999999
Q ss_pred HhcCceecceeeEEecCCCCc
Q 015974 302 AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.||+..|.|+.|.|.++.+..
T Consensus 86 ~l~g~~~~g~~l~V~~a~~~~ 106 (115)
T 2cpz_A 86 SMNGFQIGMKRLKVQLKRSKN 106 (115)
T ss_dssp HHTTCEETTEECEEECCCCSC
T ss_pred HcCCCEECCEEEEEEEcCCCC
Confidence 799999999999999998654
No 60
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.65 E-value=5.8e-16 Score=125.83 Aligned_cols=82 Identities=17% Similarity=0.269 Sum_probs=73.1
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|+|+.+. ++.++|||||+|.+.++|..||
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~~ 76 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR------------------AGKPKGLAYVEYENESQASQAVM 76 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT------------------TSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC------------------CCCEEeEEEEEECCHHHHHHHHH
Confidence 446889999999999999999999999999999996653 2446799999999999999999
Q ss_pred HhcCceecceeeEEecCCCCc
Q 015974 302 AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.||+..|.|+.|.|.++.++.
T Consensus 77 ~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 77 KMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp HHTTEESSSCEEEEEECCCCS
T ss_pred HhCCCEECCEEEEEEECCCCC
Confidence 699999999999999997643
No 61
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=3.4e-16 Score=128.37 Aligned_cols=80 Identities=15% Similarity=0.233 Sum_probs=72.1
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+.+|+++|+.+|+.||.|..|.|+.++ .++.++|||||+|.+.++|..|+ .
T Consensus 22 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~A~~~ 84 (106)
T 1p27_B 22 EGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR-----------------RTGYLKGYTLVEYETYKEAQAAMEG 84 (106)
T ss_dssp TBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-----------------TTSSEEEEEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecC-----------------CCCceeeEEEEEECCHHHHHHHHHH
Confidence 46889999999999999999999999999999997654 23456799999999999999999 5
Q ss_pred hcCceecceeeEEecCCC
Q 015974 303 FNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (397)
|||..|.|+.|.|.++.+
T Consensus 85 l~g~~~~g~~l~V~~a~~ 102 (106)
T 1p27_B 85 LNGQDLMGQPISVDWCFV 102 (106)
T ss_dssp HTTCBSSSSBCEEEESEE
T ss_pred hcCCEECCcEEEEEeecC
Confidence 999999999999999864
No 62
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.6e-15 Score=123.84 Aligned_cols=82 Identities=20% Similarity=0.353 Sum_probs=72.9
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+++|+.||.|..|+|+.++ +.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-------------------~~~~g~afV~f~~~~~a~~A~ 72 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-------------------RGSKGFGFVTFENSADADRAR 72 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCT-------------------TTTCCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-------------------CCCcEEEEEEECCHHHHHHHH
Confidence 4557999999999999999999999999999999996643 125699999999999999999
Q ss_pred -HhcCceecceeeEEecCCCCc
Q 015974 302 -AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.||+..|.|+.|.|.++.++.
T Consensus 73 ~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 73 EKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp HHHTTCEETTEECEEEECCSSC
T ss_pred HHhCCCEECCEEEEEEEcccCC
Confidence 599999999999999998653
No 63
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=4.6e-16 Score=126.05 Aligned_cols=83 Identities=18% Similarity=0.280 Sum_probs=73.7
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCee-EEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEID-SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~-~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
....++|||+|||+.+|+++|+.+|+.||.|. +|+|+.++ .++.++|||||+|.+.++|..|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~a~~A 68 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNR-----------------LTGIPAGYCFVEFADLATAEKC 68 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECS-----------------SSCCEEEEEEEECSCHHHHHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecC-----------------CCCCcCCEEEEEeCCHHHHHHH
Confidence 34578999999999999999999999999999 99997754 2345679999999999999999
Q ss_pred HH-hcCceeccee----eEEecCCCC
Q 015974 301 LA-FNMAVIGGNH----IRLDRACPP 321 (397)
Q Consensus 301 l~-lng~~l~Gr~----I~V~~a~~~ 321 (397)
+. ||+..|.|+. |.|.++.+.
T Consensus 69 ~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 69 LHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp HHTTTTSEESSCSSCEECCEEETTCC
T ss_pred HHHHcCCccCCCCcceeEEEeecCCC
Confidence 95 9999999999 999998764
No 64
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.65 E-value=7.8e-16 Score=126.25 Aligned_cols=85 Identities=21% Similarity=0.373 Sum_probs=73.5
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.+. ..++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~----------------~~~~~~~g~afV~f~~~~~a~~A~ 75 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKM----------------TGTGAHRGFGFVDFITKQDAKKAF 75 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCC----------------SSSCSSCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCC----------------CCCCCcCceEEEEECCHHHHHHHH
Confidence 3457889999999999999999999999999999885541 024557799999999999999999
Q ss_pred -Hh-cCceecceeeEEecCCCCc
Q 015974 302 -AF-NMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 -~l-ng~~l~Gr~I~V~~a~~~~ 322 (397)
.| |+..|.|+.|.|.++.+..
T Consensus 76 ~~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 76 NALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp HHHHTCCBSSSCBCEEEECCCCC
T ss_pred HHhccCCeECCCEEEEEeCCCCC
Confidence 58 9999999999999998653
No 65
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.65 E-value=3.9e-16 Score=127.97 Aligned_cols=85 Identities=21% Similarity=0.326 Sum_probs=74.8
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~a~~a~ 75 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDK-----------------TTNQSRGFGFVKFKDPNCVGTVL 75 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECS-----------------SSCCEEEEEEEEESSTTHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCC-----------------CCCCcceEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999997754 23456799999999999999999
Q ss_pred HhcCceecceeeEEecCCCCcc
Q 015974 302 AFNMAVIGGNHIRLDRACPPRK 323 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k 323 (397)
..++..|.|+.|.|.++.++..
T Consensus 76 ~~~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 76 ASRPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp HHCSEEETTEEEBCCCSCCSSC
T ss_pred HhCCCeECCEEEEEEEccCCCC
Confidence 6699999999999999986543
No 66
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.64 E-value=6.4e-16 Score=126.74 Aligned_cols=85 Identities=18% Similarity=0.243 Sum_probs=74.1
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~A~~A~ 72 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDR-----------------FTGMHKGCAFLTYCERESALKAQ 72 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCS-----------------SSCSCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecC-----------------CCCCcceEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999986643 23557799999999999999999
Q ss_pred -HhcCcee---cceeeEEecCCCCcc
Q 015974 302 -AFNMAVI---GGNHIRLDRACPPRK 323 (397)
Q Consensus 302 -~lng~~l---~Gr~I~V~~a~~~~k 323 (397)
.||+..+ .|+.|.|.++.+...
T Consensus 73 ~~l~g~~~~~~~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 73 SALHEQKTLPGMNRPIQVKPADSESR 98 (106)
T ss_dssp HHHTTTCCCTTCSSCCEEEECCCCSC
T ss_pred HHhcCCcccCCCCceEEEEECCcccc
Confidence 5999987 899999999986543
No 67
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=8.3e-16 Score=127.62 Aligned_cols=84 Identities=17% Similarity=0.183 Sum_probs=73.3
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCee--------EEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecC
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEID--------SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~--------~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s 293 (397)
....++|||+|||+.+|+++|+.+|+.||.|. .|+|+.++ .++.++|||||+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~-----------------~~g~~~g~afV~f~~ 74 (113)
T 2cpe_A 12 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDK-----------------ETGKPKGDATVSYED 74 (113)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCT-----------------TTCSBCSEEEEEBSS
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeC-----------------CCCCeeeEEEEEECC
Confidence 34579999999999999999999999999998 57775543 245677999999999
Q ss_pred HHHHHHHH-HhcCceecceeeEEecCCCCc
Q 015974 294 EQSTEAAL-AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 294 ~e~A~~Al-~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.++|..|| .||+..|.|+.|.|.++.+..
T Consensus 75 ~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (113)
T 2cpe_A 75 PPTAKAAVEWFDGKDFQGSKLKVSLARKKP 104 (113)
T ss_dssp HHHHHHHHHHHTTCEETTEECEEECSSCCC
T ss_pred HHHHHHHHHHcCCCccCCCEEEEEECCCCC
Confidence 99999999 599999999999999998654
No 68
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.64 E-value=7.8e-16 Score=123.58 Aligned_cols=79 Identities=28% Similarity=0.426 Sum_probs=71.0
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+++|+.||.|..|+|+.++ .+.++|||||+|.+.++|..|+.
T Consensus 14 ~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~~ 75 (95)
T 2ywk_A 14 EADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDR------------------EGKPKSFGFVCFKHPESVSYAIA 75 (95)
T ss_dssp TGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT------------------TSCEEEEEEEEESSTHHHHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECC------------------CCCCceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999997653 13467999999999999999995
Q ss_pred -hcCceecceeeEEecCC
Q 015974 303 -FNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 303 -lng~~l~Gr~I~V~~a~ 319 (397)
||+..|.|+.|.|.++.
T Consensus 76 ~l~g~~~~g~~l~V~~a~ 93 (95)
T 2ywk_A 76 LLNGIRLYGRPINVSGPS 93 (95)
T ss_dssp HHTTCEETTEECEEECCC
T ss_pred HhCCCEECCCEEEEEEcC
Confidence 99999999999999975
No 69
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.64 E-value=1e-15 Score=125.31 Aligned_cols=82 Identities=22% Similarity=0.326 Sum_probs=72.8
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ ++.++|||||+|.+.++|..||
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~A~~Ai~ 74 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP------------------DGSSKGCAFVKFSSHTEAQAAIH 74 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS------------------SSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------------------CCCcCcEEEEEeCCHHHHHHHHH
Confidence 347899999999999999999999999999999997653 2346799999999999999999
Q ss_pred HhcCceecc---eeeEEecCCCCc
Q 015974 302 AFNMAVIGG---NHIRLDRACPPR 322 (397)
Q Consensus 302 ~lng~~l~G---r~I~V~~a~~~~ 322 (397)
.||+..+.| +.|.|.++.+..
T Consensus 75 ~l~g~~~~gg~~~~l~V~~a~~~~ 98 (105)
T 2dnh_A 75 ALHGSQTMPGASSSLVVKFADTDK 98 (105)
T ss_dssp HHSSCCCCTTCSSCCEEEESCSSC
T ss_pred HHcCCccCCCCCccEEEEECccCc
Confidence 599999988 999999998653
No 70
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.64 E-value=6.1e-16 Score=127.84 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=72.5
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++ .+|.++|||||+|.+.++|..||
T Consensus 24 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~A~~Ai~ 86 (110)
T 1oo0_B 24 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR-----------------RTGFSKGYALVEYETHKQALAAKE 86 (110)
T ss_dssp TTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCT-----------------TTSSBCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC-----------------CCCCcceEEEEEECCHHHHHHHHH
Confidence 346889999999999999999999999999999886543 24567799999999999999999
Q ss_pred HhcCceecceeeEEecCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (397)
.|||..|.|+.|.|.++.+.
T Consensus 87 ~l~g~~~~g~~l~V~~a~~~ 106 (110)
T 1oo0_B 87 ALNGAEIMGQTIQVDWCFVK 106 (110)
T ss_dssp HHTTCEETTEECEEEESEES
T ss_pred HcCCCEECCcEEEEEEcccC
Confidence 49999999999999998653
No 71
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.8e-15 Score=123.52 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=72.4
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||.
T Consensus 13 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~~ 75 (103)
T 2cqg_A 13 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDL-----------------KTGHSKGFGFVRFTEYETQVKVMS 75 (103)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECS-----------------SSCSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecC-----------------CCCCccceEEEEECCHHHHHHHHH
Confidence 446889999999999999999999999999999997754 235567999999999999999997
Q ss_pred hcCceecceeeEEecCCCCc
Q 015974 303 FNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (397)
++..|.|+.|.|.++.+..
T Consensus 76 -~~~~~~g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 76 -QRHMIDGRWCDCKLPNSKQ 94 (103)
T ss_dssp -SCEEETTEEEEEECCCTTC
T ss_pred -cCCeeCCeEEEEEecCCCC
Confidence 5789999999999998654
No 72
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=9.5e-16 Score=128.00 Aligned_cols=83 Identities=19% Similarity=0.392 Sum_probs=73.6
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHh
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (397)
..++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||..
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~a~~Ai~~ 88 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDP-----------------ASKRSRGFGFVTFSSMAEVDAAMAA 88 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCT-----------------TTSSCCSEEEEECSSHHHHHHHHTS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-----------------CCCCcCceEEEEeCCHHHHHHHHHh
Confidence 35889999999999999999999999999999997653 2355779999999999999999977
Q ss_pred cCceecceeeEEecCCCCcc
Q 015974 304 NMAVIGGNHIRLDRACPPRK 323 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k 323 (397)
++..|.|+.|.|.++.+...
T Consensus 89 ~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 89 RPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp CSEEETTEEEEEECCSSCCC
T ss_pred CCcEECCEEEEEEECCCCcc
Confidence 99999999999999986543
No 73
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.64 E-value=6.7e-16 Score=128.25 Aligned_cols=83 Identities=18% Similarity=0.331 Sum_probs=73.7
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..|+
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~F~~~~~A~~Ai 85 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDS-----------------ETGRSKGYGFITFSDSECAKKAL 85 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEET-----------------TTTEEEEEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC-----------------CCCccceEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999997764 23456799999999999999999
Q ss_pred -HhcCceecceeeEEecCCCC
Q 015974 302 -AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~ 321 (397)
.+||..|.|+.|.|.++.++
T Consensus 86 ~~l~g~~i~g~~l~V~~a~~k 106 (108)
T 2jrs_A 86 EQLNGFELAGRPMKVGHVTER 106 (108)
T ss_dssp HHHTTCCSSSSCCEEECSCSS
T ss_pred HHcCCCEECCEEEEEEEcccC
Confidence 59999999999999998753
No 74
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=1.7e-15 Score=126.51 Aligned_cols=82 Identities=22% Similarity=0.343 Sum_probs=72.1
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~Ai 76 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDR-----------------QTGKSRGYGFVTMADRAAAERAC 76 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCS-----------------SSCCCCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcC-----------------CCCccceEEEEEECCHHHHHHHH
Confidence 4457999999999999999999999999999999986543 23557799999999999999999
Q ss_pred -HhcCceecceeeEEecCCCC
Q 015974 302 -AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~ 321 (397)
.+++ .|.|+.|.|.++.+.
T Consensus 77 ~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 77 KDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp TCSSC-EETTEECEEEESTTT
T ss_pred HhCCC-cCCCEEEEEEEcccC
Confidence 4777 899999999999754
No 75
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.64 E-value=6.9e-16 Score=125.30 Aligned_cols=80 Identities=24% Similarity=0.273 Sum_probs=71.4
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeE--------EEEeeecccCCCCCccchhhhhccccCCCcceEEEEecC
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS--------VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~--------Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s 293 (397)
....++|||+|||+.+|+++|+.+|+.||.|.. |+|+.++ .+|.++|||||+|.+
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~-----------------~~g~~~G~afV~f~~ 72 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR-----------------ETGKLKGEATVSFDD 72 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECT-----------------TTCSEEEEEEEEBSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecC-----------------CCCCeeeEEEEEECC
Confidence 345789999999999999999999999999999 8887653 235567999999999
Q ss_pred HHHHHHHH-HhcCceecceeeEEecC
Q 015974 294 EQSTEAAL-AFNMAVIGGNHIRLDRA 318 (397)
Q Consensus 294 ~e~A~~Al-~lng~~l~Gr~I~V~~a 318 (397)
.++|..|+ .|||..|.|+.|.|.++
T Consensus 73 ~~~a~~Ai~~l~g~~~~g~~l~V~~A 98 (99)
T 2la6_A 73 PPSAKAAIDWFDGKEFSGNPIKVSFA 98 (99)
T ss_dssp HHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred HHHHHHHHHHhCCCEeCCcEEEEEec
Confidence 99999999 59999999999999987
No 76
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=5.3e-16 Score=129.72 Aligned_cols=82 Identities=11% Similarity=0.136 Sum_probs=72.7
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCe-eEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEI-DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I-~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
....++|||+|||+.+|+++|+++|+.||.| ..|+|+.++ ++.++|||||+|.+.++|..|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~------------------~g~~~G~afV~F~~~~~a~~A 73 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN------------------NGQGLGQALVQFKNEDDARKS 73 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT------------------TSSCSSCEEEECSSHHHHHHH
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC------------------CCCcceEEEEEECCHHHHHHH
Confidence 4457899999999999999999999999999 888886542 345779999999999999999
Q ss_pred HHhcCceecceeeEEecCCCC
Q 015974 301 LAFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~~ 321 (397)
|.+|+..|.|+.|.|.++.+.
T Consensus 74 l~~~~~~~~gr~i~v~~a~~~ 94 (114)
T 2cpy_A 74 ERLHRKKLNGREAFVHVVTLE 94 (114)
T ss_dssp GGGCSEEETTEEEEEEEECHH
T ss_pred HHhCCCccCCeEEEEEECCHH
Confidence 988999999999999998753
No 77
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.63 E-value=8.9e-16 Score=122.52 Aligned_cols=81 Identities=22% Similarity=0.249 Sum_probs=71.9
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|+|+.+ ++.++|||||+|.+.++|..|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~-------------------~g~~~g~afV~f~~~~~a~~a~~ 66 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME-------------------NGKSKGCGVVKFESPEVAERACR 66 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES-------------------SSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc-------------------CCCcceEEEEEECCHHHHHHHHH
Confidence 34789999999999999999999999999999998542 2346699999999999999999
Q ss_pred HhcCceecceeeEEecCCCCc
Q 015974 302 AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.||+..|.|+.|.|.++.+..
T Consensus 67 ~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 67 MMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp HHTTCCBTTBCCCCEECSCCS
T ss_pred HhCCCEECCcEEEEEEcCCCC
Confidence 599999999999999997653
No 78
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=1.7e-15 Score=122.68 Aligned_cols=80 Identities=19% Similarity=0.259 Sum_probs=70.8
Q ss_pred CccCEEEEecCCCCCcHHHHH----HHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~----~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~ 298 (397)
...++|||+|||+.+|+++|+ .+|+.||.|.+|+|+.+.. . +|||||+|.+.++|.
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~-------------------~-rg~afV~f~~~~~A~ 66 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTD-------------------Y-QLKAVVQMENLQDAI 66 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCS-------------------T-TCCEEEEESSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCC-------------------C-CeEEEEEECCHHHHH
Confidence 346889999999999999999 9999999999999965431 1 589999999999999
Q ss_pred HHH-HhcCceecceeeEEecCCCCc
Q 015974 299 AAL-AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 299 ~Al-~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.|| .|||..|.|+.|.|.++.+..
T Consensus 67 ~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 67 GAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp HHHHHHTTEEETTEEEEEEECCCSS
T ss_pred HHHHHhCCCEECCeEEEEEEcCCCC
Confidence 999 599999999999999997643
No 79
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=6.5e-16 Score=128.62 Aligned_cols=81 Identities=25% Similarity=0.275 Sum_probs=72.7
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHh
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (397)
..++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||.|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~~l 86 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDR-----------------NSRRSKGIAYVEFCEIQSVPLAIGL 86 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSC-----------------CSSSCCCCEEEEESCGGGHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecC-----------------CCCccCcEEEEEeCcHHHHHHHHHc
Confidence 46899999999999999999999999999999996653 2355779999999999999999999
Q ss_pred cCceecceeeEEecCCCC
Q 015974 304 NMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (397)
|+..|.|+.|.|.++.+.
T Consensus 87 ~g~~~~g~~l~V~~a~~~ 104 (114)
T 2cq4_A 87 TGQRLLGVPIIVQASQAE 104 (114)
T ss_dssp TTEEETTEEEEEEEHHHH
T ss_pred CCCEeCCeEEEEEecCCC
Confidence 999999999999998643
No 80
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=3.8e-16 Score=123.07 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=70.4
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+.+|+++|+.+|+.||.|..|.|+.++ .++.++|||||+|.+.++|..|+ .
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~A~~~ 66 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDK-----------------TTNKCKGYGFVDFDSPSAAQKAVTA 66 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCS-----------------SSCSCCSEEEEEESCHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-----------------CCCCcCcEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999986653 23456799999999999999999 5
Q ss_pred hcCceecceeeEEecCC
Q 015974 303 FNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (397)
|||..|.|+.|+|.++.
T Consensus 67 l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 67 LKASGVQAQMAKQSGPS 83 (85)
T ss_dssp HHHHTCCEESCCSSCCC
T ss_pred hcCCeEeeEEEeecCCC
Confidence 99999999999988764
No 81
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.63 E-value=2.5e-15 Score=124.12 Aligned_cols=81 Identities=22% Similarity=0.397 Sum_probs=71.7
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.. +.++|||||+|.+.++|..||
T Consensus 20 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--------------------~~~~g~afV~f~~~~~A~~A~~ 79 (109)
T 1x4a_A 20 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNR--------------------RGGPPFAFVEFEDPRDAEDAVY 79 (109)
T ss_dssp CCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCS--------------------SSSSCCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEC--------------------CCCCcEEEEEECCHHHHHHHHH
Confidence 34689999999999999999999999999999988332 235699999999999999999
Q ss_pred HhcCceecceeeEEecCCCCcc
Q 015974 302 AFNMAVIGGNHIRLDRACPPRK 323 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k 323 (397)
.||+..|.|+.|.|.++.+...
T Consensus 80 ~l~g~~~~g~~l~V~~a~~~~~ 101 (109)
T 1x4a_A 80 GRDGYDYDGYRLRVEFPRSGRG 101 (109)
T ss_dssp HHTTCEETTEECEEECCCCCCC
T ss_pred HcCCCEECCeEEEEEEcccCCC
Confidence 7999999999999999986543
No 82
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.63 E-value=1.3e-15 Score=128.50 Aligned_cols=80 Identities=25% Similarity=0.349 Sum_probs=72.8
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhc
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (397)
.++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||.||
T Consensus 36 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~A~~l~ 98 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDK-----------------FSGHPKGYAYIEFAERNSVDAAVAMD 98 (124)
T ss_dssp HTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEEC-----------------TTSSCEEEEEEEESSHHHHHHHHTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC-----------------CCCCcccEEEEEECCHHHHHHHHhcC
Confidence 5889999999999999999999999999999997754 23456799999999999999999999
Q ss_pred CceecceeeEEecCCCC
Q 015974 305 MAVIGGNHIRLDRACPP 321 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~~ 321 (397)
|..|.|+.|.|.++.+.
T Consensus 99 g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 99 ETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp TCEETTEECEEEESSCC
T ss_pred CCeECCeEEEEEECCCC
Confidence 99999999999998753
No 83
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.63 E-value=9.5e-16 Score=128.24 Aligned_cols=80 Identities=19% Similarity=0.369 Sum_probs=71.3
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+++|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-----------------~~g~~~g~afV~f~~~~~A~~A~ 99 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDK-----------------QTSLSKCFGFVSFDNPDSAQVAI 99 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCS-----------------SSSCCCCEEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCC-----------------CCCCcCcEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999986543 23557799999999999999999
Q ss_pred -HhcCceecceeeEEecC
Q 015974 302 -AFNMAVIGGNHIRLDRA 318 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a 318 (397)
.|||..|.|+.|.|.++
T Consensus 100 ~~l~g~~~~g~~l~V~~a 117 (118)
T 2khc_A 100 KAMNGFQVGTKRLKVQLK 117 (118)
T ss_dssp HHCCCCEETTEECCEEEC
T ss_pred HHcCCCEECCEEEEEEec
Confidence 59999999999999886
No 84
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=123.97 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=72.9
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcc-cCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIK-FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~-~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
...++|||+|||+.+|+++|+.+|+. ||.|.+|+|+.++ ++.++|||||+|.+.++|..||
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~ 68 (104)
T 2dhg_A 7 GPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ------------------TGVSKGYGFVKFTDELEQKRAL 68 (104)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT------------------TCCEEEEEEEEESCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC------------------CCCccceEEEEECCHHHHHHHH
Confidence 45688999999999999999999999 9999999997653 2346799999999999999999
Q ss_pred -HhcCce-ecceeeEEecCCCCc
Q 015974 302 -AFNMAV-IGGNHIRLDRACPPR 322 (397)
Q Consensus 302 -~lng~~-l~Gr~I~V~~a~~~~ 322 (397)
.||+.. |.|+.|.|.++.+..
T Consensus 69 ~~l~g~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 69 TECQGAVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp HHTTTCCSSSSSCCCCCBCCCCC
T ss_pred HHccCCcccCCEeEEEEEccCCC
Confidence 599999 999999999997654
No 85
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=6.3e-16 Score=126.16 Aligned_cols=81 Identities=22% Similarity=0.406 Sum_probs=72.9
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .+|.++|||||+|.+.++|..|+ .
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~~~ 69 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDR-----------------ETGKPKGYGFCEYQDQETALSAMRN 69 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEET-----------------TTTEEEEEEEEECSCHHHHHHHHHH
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCC-----------------CCCccceEEEEEECCHHHHHHHHHH
Confidence 36889999999999999999999999999999997754 23456799999999999999999 5
Q ss_pred hcCceecceeeEEecCCCC
Q 015974 303 FNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (397)
|||..|.|+.|.|.++.+.
T Consensus 70 l~g~~~~g~~l~v~~a~~~ 88 (104)
T 1p1t_A 70 LNGREFSGRALRVDNAASE 88 (104)
T ss_dssp SSSBSCSSSCBEEEETTCT
T ss_pred hCCCeeCCcEEEEEeCCCc
Confidence 9999999999999999764
No 86
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=124.71 Aligned_cols=81 Identities=16% Similarity=0.211 Sum_probs=70.8
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeE-EEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS-VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~-Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
...++|||+|||+.+|+++|+++|+.||.|.. |+|+.+ .+++++|||||+|.+.++|..||
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~------------------~~g~~~G~afV~F~~~~~a~~A~ 74 (104)
T 1wg5_A 13 ANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD------------------FQGRSTGEAFVQFASQEIAEKAL 74 (104)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC------------------SSSCBCSEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC------------------CCCCcceEEEEEECCHHHHHHHH
Confidence 44689999999999999999999999999986 776443 24567799999999999999999
Q ss_pred HhcCceecceeeEEecCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (397)
..|+..|.|+.|.|.++.+.
T Consensus 75 ~~~~~~~~gr~i~v~~~~~~ 94 (104)
T 1wg5_A 75 KKHKERIGHRYIEIFKSSRA 94 (104)
T ss_dssp TTTTCCSSSSCCEEEEECTT
T ss_pred HhCcchhCCcEEEEEECCHH
Confidence 77999999999999998754
No 87
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.62 E-value=4e-15 Score=123.54 Aligned_cols=82 Identities=22% Similarity=0.245 Sum_probs=72.6
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+++|+.||.|..|+|+.++ ++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~ 73 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDK------------------DGKSRGIGTVTFEQSIEAVQAI 73 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT------------------TCSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------------------CCCeeeEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999987653 2346799999999999999999
Q ss_pred H-hcCceecceeeEEecCCCC
Q 015974 302 A-FNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~ 321 (397)
. ||+..|.|+.|.|.++...
T Consensus 74 ~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 74 SMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp HHHTTCEETTEECEEEECSCC
T ss_pred HHhCCCEeCCCEEEEEEcccC
Confidence 5 9999999999999998643
No 88
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.62 E-value=2.6e-16 Score=120.92 Aligned_cols=75 Identities=23% Similarity=0.377 Sum_probs=67.1
Q ss_pred EEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhcCc
Q 015974 227 TIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFNMA 306 (397)
Q Consensus 227 tVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~lng~ 306 (397)
+|||+|||+.+|+++|+.+|+.||.|..|.++.++ .++.++|||||+|.+.++|..|+.+++.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~Ai~~~~~ 63 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDN-----------------KTNKRRGFCFITFKEEEPVKKIMEKKYH 63 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSC-----------------CCSSSCCCEEEECSSSHHHHHHHTTSSC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-----------------CCCCcCCEEEEEECCHHHHHHHHHhCCC
Confidence 59999999999999999999999999999885543 2356779999999999999999988999
Q ss_pred eecceeeEEecC
Q 015974 307 VIGGNHIRLDRA 318 (397)
Q Consensus 307 ~l~Gr~I~V~~a 318 (397)
.+.|+.|.|.++
T Consensus 64 ~~~g~~l~v~~a 75 (75)
T 1iqt_A 64 NVGLSKCEIKVA 75 (75)
T ss_dssp CBTTBCCCEEEC
T ss_pred eECCEEEEEEEC
Confidence 999999999864
No 89
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.62 E-value=1.2e-15 Score=135.24 Aligned_cols=80 Identities=18% Similarity=0.262 Sum_probs=71.4
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccC--CeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG--EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G--~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
..++|||+|||+++|+++|+.+|+.|| .|.+|+|+.++ .+|.++|||||+|.+.++|..||
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~-----------------~tg~skGfaFV~f~~~~~A~~Ai 116 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENR-----------------ANGQSKGYAEVVVASENSVHKLL 116 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECT-----------------TTCCEEEEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecC-----------------CCCccceEEEEEECCHHHHHHHH
Confidence 468999999999999999999999999 89999997764 24567799999999999999999
Q ss_pred -HhcCceecceeeEEecCCC
Q 015974 302 -AFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~ 320 (397)
.|||..|.|+.|.|.++.+
T Consensus 117 ~~lng~~~~Gr~l~V~~a~~ 136 (156)
T 3n9u_C 117 ELLPGKVLNGEKVDVRPATR 136 (156)
T ss_dssp HHSTTCEETTEECEEEECCH
T ss_pred HHcCCCEECCeEeEEEEcCC
Confidence 5899999999999999864
No 90
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.62 E-value=1.6e-15 Score=126.23 Aligned_cols=85 Identities=20% Similarity=0.305 Sum_probs=72.9
Q ss_pred ccCEEEEecCCCCCcHHHHH---HHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 224 LLRTIFVGNLPLKVKKKTLI---KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~---~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
..++|||+|||+.+|+++|+ ++|++||.|..|.|+.+.. ++. .+.++|||||+|.+.++|..|
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~--~~~------------~~~~~G~afV~f~~~~~A~~A 79 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTS--YAG------------SQGPSASAYVTYIRSEDALRA 79 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSS--CCS------------SSCCCEEEEEEESSHHHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCC--cCc------------cCCCCeEEEEEECcHHHHHHH
Confidence 46789999999999999999 9999999999999966531 111 234679999999999999999
Q ss_pred H-HhcCceecceeeEEecCCCCc
Q 015974 301 L-AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~~ 322 (397)
| .||+..|.|+.|.|.++.++.
T Consensus 80 i~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 80 IQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp HHHHTTEEETTEEEEEESCCCCS
T ss_pred HHHhCCCEECCEEEEEEeccccc
Confidence 9 589999999999999998653
No 91
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-15 Score=122.81 Aligned_cols=82 Identities=18% Similarity=0.280 Sum_probs=72.7
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.+ ++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~-------------------~g~~~g~afV~f~~~~~A~~A~ 72 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME-------------------GGRSKGFGFVCFSSPEEATKAV 72 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC-------------------SSSEEEEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-------------------CCCcCEEEEEEECCHHHHHHHH
Confidence 345789999999999999999999999999999998653 2346699999999999999999
Q ss_pred -HhcCceecceeeEEecCCCCc
Q 015974 302 -AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.||+..|.|+.|.|.++.+..
T Consensus 73 ~~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2d9p_A 73 TEMNGRIVATKPLYVALAQRKE 94 (103)
T ss_dssp HHHTTCBSSSSBCEEEECSSCC
T ss_pred HHhCCCEeCCcEEEEEEecccc
Confidence 599999999999999998654
No 92
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=2.4e-15 Score=120.13 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=71.7
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+++|+.| .|..|+|+++. +|.++|||||+|.+.++|..||.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~~ 68 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNA------------------HGNKTGYIFVDFSNEEEVKQALK 68 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECT------------------TSCEEEEEEEECSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECC------------------CCCCceEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999 89999986641 34567999999999999999999
Q ss_pred hcCceecceeeEEecCCCC
Q 015974 303 FNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (397)
+|+..|.|+.|.|.++.+.
T Consensus 69 ~~g~~~~gr~i~v~~a~~~ 87 (91)
T 2dgw_A 69 CNREYMGGRYIEVFREKSG 87 (91)
T ss_dssp SCSEEETTEEEEEEEESSC
T ss_pred hCCceeCCcEEEEEECCcC
Confidence 9999999999999998754
No 93
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.62 E-value=1.6e-15 Score=124.97 Aligned_cols=80 Identities=18% Similarity=0.177 Sum_probs=70.4
Q ss_pred CccCEEEEecCCCCC------cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHH
Q 015974 223 KLLRTIFVGNLPLKV------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQS 296 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~------Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~ 296 (397)
...++|||+|||+.+ |+++|+.+|+.||.|.+|.|+. .+|.++|||||+|.+.++
T Consensus 13 ~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~-------------------~~g~~~G~afV~f~~~~~ 73 (105)
T 2nlw_A 13 GIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-------------------EDGKTKGYIFLEYASPAH 73 (105)
T ss_dssp SCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCC-------------------BTTBSCCEEEEEECSSSH
T ss_pred CCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeC-------------------CCCCeeeEEEEEECCHHH
Confidence 446899999999999 8899999999999999998741 234577999999999999
Q ss_pred HHHHH-HhcCceecce-eeEEecCCCC
Q 015974 297 TEAAL-AFNMAVIGGN-HIRLDRACPP 321 (397)
Q Consensus 297 A~~Al-~lng~~l~Gr-~I~V~~a~~~ 321 (397)
|..|| .|||..|.|+ .|.|.++...
T Consensus 74 A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 74 AVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp HHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred HHHHHHHhCCcccCCCceEEEEEcchH
Confidence 99999 5999999998 9999998753
No 94
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.62 E-value=7.6e-16 Score=126.84 Aligned_cols=82 Identities=16% Similarity=0.199 Sum_probs=71.6
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+++|+.||.| .|+|+.++ +++++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~------------------~g~~~G~afV~F~~~~~a~~Al 72 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP------------------DGRVTGEADVEFATHEDAVAAM 72 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS------------------SSCEEEEEEEECSSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC------------------CCCEeeEEEEEECCHHHHHHHH
Confidence 3456899999999999999999999999954 89886653 3456799999999999999999
Q ss_pred HhcCceecceeeEEecCCCCc
Q 015974 302 AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.+|+..|.|+.|.|.++.+..
T Consensus 73 ~~~~~~~~gr~i~V~~~~~~~ 93 (102)
T 1wez_A 73 AKDKANMQHRYVELFLNSTAG 93 (102)
T ss_dssp TTSSCCSSSSCCEEEEECCCC
T ss_pred HhCCCeECCcEEEEEECCCCC
Confidence 999999999999999987543
No 95
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.62 E-value=2.2e-15 Score=129.57 Aligned_cols=85 Identities=24% Similarity=0.369 Sum_probs=75.0
Q ss_pred CCCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 221 ~~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
.....++|||+|||+.+|+++|+.+|+.||.|.+|+|+.++ .++.++|||||+|.+.++|..|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~A 100 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR-----------------ETRQSRGYGFVKFQSGSSAQQA 100 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEET-----------------TTTEEEEEEEEEESSHHHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcC-----------------CCCCcceEEEEEECCHHHHHHH
Confidence 34457899999999999999999999999999999997764 2345679999999999999999
Q ss_pred H-HhcCceecceeeEEecCCCCc
Q 015974 301 L-AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~~ 322 (397)
| .||+..|.|+.|.|.++.+..
T Consensus 101 ~~~l~g~~~~g~~l~v~~a~~~~ 123 (139)
T 1u6f_A 101 IAGLNGFNILNKRLKVALAASGH 123 (139)
T ss_dssp HHHTTTEECSSCEEEEEESSCCC
T ss_pred HHHhCCCEECCeEEEEEECCCCC
Confidence 9 599999999999999997653
No 96
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.61 E-value=1e-15 Score=123.78 Aligned_cols=82 Identities=21% Similarity=0.268 Sum_probs=71.6
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..+.++.++ .++.++|||||+|.+.++|..||
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~-----------------~~g~~~g~afV~f~~~~~a~~Ai~ 75 (98)
T 2cqp_A 13 PGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN-----------------EKGMPTGEAMVAFESRDEATAAVI 75 (98)
T ss_dssp CSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEEC-----------------SSSCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEEC-----------------CCCCeeeEEEEEECCHHHHHHHHH
Confidence 346889999999999999999999999999877775543 23456799999999999999999
Q ss_pred HhcCceecceeeEEecCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (397)
.||+..|.|+.|.|.++..+
T Consensus 76 ~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 76 DLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp HTTTCEETTEECEEEESSCS
T ss_pred HhCCCeeCCeEEEEEEcCCC
Confidence 79999999999999998753
No 97
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.61 E-value=1.5e-15 Score=130.41 Aligned_cols=83 Identities=22% Similarity=0.229 Sum_probs=73.7
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..||
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-----------------~tg~~~G~afV~F~~~~~A~~Ai 105 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQ-----------------QSRRSRGFAFVYFENVDDAKEAK 105 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCS-----------------SSSCCCCEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-----------------CCCccceEEEEEECCHHHHHHHH
Confidence 3457889999999999999999999999999999997654 23456799999999999999999
Q ss_pred -HhcCceecceeeEEecCCCC
Q 015974 302 -AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~ 321 (397)
.||+..|.|+.|.|.++.++
T Consensus 106 ~~lng~~i~g~~l~V~~a~~~ 126 (129)
T 2kxn_B 106 ERANGMELDGRRIRVDFSITK 126 (129)
T ss_dssp HHHTTCCSSSSCCEESCCSSS
T ss_pred HHhCCCEECCEEEEEEEecCC
Confidence 59999999999999999764
No 98
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.61 E-value=9.4e-16 Score=129.31 Aligned_cols=80 Identities=15% Similarity=0.131 Sum_probs=71.9
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCC---eeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGE---IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~---I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~ 299 (397)
...++|||+|||+.+|+++|+++|+.||. |..|+|+.+. .|+++|||||+|.+.++|.+
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~------------------~g~~~G~afV~F~~~~~a~~ 76 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTR------------------EGRQSGEAFVELESEDDVKL 76 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECS------------------SSCEEEEEEEEBSSHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECC------------------CCCCCeEEEEEECCHHHHHH
Confidence 44789999999999999999999999999 8899987653 14567999999999999999
Q ss_pred HHHhcCceecceeeEEecCCC
Q 015974 300 ALAFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 300 Al~lng~~l~Gr~I~V~~a~~ 320 (397)
||.+|+..|.|+.|.|.++..
T Consensus 77 Al~~~g~~~~gr~i~V~~a~~ 97 (118)
T 2db1_A 77 ALKKDRESMGHRYIEVFKSHR 97 (118)
T ss_dssp HGGGTTEEETTEEEEEEEECH
T ss_pred HHhcCCCeECCeEEEEEECCH
Confidence 999999999999999999864
No 99
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.61 E-value=7.8e-16 Score=123.60 Aligned_cols=79 Identities=20% Similarity=0.277 Sum_probs=69.6
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+.+|+++|+.+|+.||.|..+.++.+. .++.++|||||+|.+.++|..|| .
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~-----------------~~g~~~g~afV~f~~~~~a~~Ai~~ 76 (95)
T 2ek1_A 14 GPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYN-----------------EKGMPTGEAMVAFESRDEATAAVID 76 (95)
T ss_dssp -CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEEC-----------------TTSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeC-----------------CCCCEeeEEEEEECCHHHHHHHHHH
Confidence 35889999999999999999999999999888776653 23456799999999999999999 5
Q ss_pred hcCceecceeeEEecCC
Q 015974 303 FNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (397)
||+..|.|+.|.|.++.
T Consensus 77 l~g~~~~gr~l~v~~a~ 93 (95)
T 2ek1_A 77 LNDRPIGSRKVKLSGPS 93 (95)
T ss_dssp HTTCEETTEECEEECCC
T ss_pred hCCCeECCcEEEEEecc
Confidence 99999999999999875
No 100
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.61 E-value=8.4e-16 Score=131.58 Aligned_cols=84 Identities=17% Similarity=0.248 Sum_probs=73.2
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeE--EEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS--VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~--Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~ 299 (397)
....++|||+|||+.+|+++|+++|+.||.|.. |+|++++ .+|.++|||||+|.+. +|..
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~-----------------~tg~~rG~aFV~f~~~-~a~~ 81 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDK-----------------QTQLNRGFAFIQLSTI-EAAQ 81 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCS-----------------SSSSBCSCEEEECCHH-HHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcC-----------------CCCCcceEEEEEECCH-HHHH
Confidence 345789999999999999999999999999976 8886654 2456789999999999 9999
Q ss_pred HH-HhcCc----eecceeeEEecCCCCcc
Q 015974 300 AL-AFNMA----VIGGNHIRLDRACPPRK 323 (397)
Q Consensus 300 Al-~lng~----~l~Gr~I~V~~a~~~~k 323 (397)
|+ .|||. .|.|+.|.|.++.+...
T Consensus 82 Ai~~l~g~~~~~~~~gr~l~V~~a~~~~~ 110 (131)
T 2m2b_A 82 LLQILQALHPPLTIDGKTINVEFAKGSKR 110 (131)
T ss_dssp HHHHHTTCCCSCCGGGCCCCCEECCCSCC
T ss_pred HHHHhcCCCCCccCCCEEEEEEECCCCCC
Confidence 99 69999 99999999999986543
No 101
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.61 E-value=6.6e-16 Score=126.06 Aligned_cols=82 Identities=29% Similarity=0.402 Sum_probs=70.6
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+.+|+.|| |.+|+|+.+.. .+|.++|||||+|.+.++|..||.
T Consensus 17 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~----------------~~g~~~g~afV~f~~~~~a~~Ai~ 79 (100)
T 2j76_E 17 SPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPS----------------NPERLKGFGYAEFEDLDSLLSALS 79 (100)
T ss_dssp ---CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTT----------------TTCCCCSCEEEEECCHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCC----------------cCCccCeEEEEEECCHHHHHHHHh
Confidence 3468999999999999999999999999 99999855420 245678999999999999999999
Q ss_pred hcCceecceeeEEecCCCC
Q 015974 303 FNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (397)
|||..|.|+.|.|.++.+.
T Consensus 80 l~g~~~~g~~l~V~~a~~~ 98 (100)
T 2j76_E 80 LNEESLGNRRIRVDVADQA 98 (100)
T ss_dssp TTTCCBTTBCCCCEECCCS
T ss_pred cCCCEECCeEEEEEeccCC
Confidence 9999999999999998753
No 102
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.61 E-value=2.5e-15 Score=123.34 Aligned_cols=79 Identities=15% Similarity=0.252 Sum_probs=70.8
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+.+|+.||.|.+|.|+.++ ++.++|||||+|.+.++|..||.
T Consensus 27 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~~ 88 (107)
T 3ulh_A 27 ETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR------------------SGRSLGTADVHFERKADALKAMK 88 (107)
T ss_dssp CCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT------------------TSCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------------------CCCcceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999997653 34467999999999999999994
Q ss_pred -hcCceecceeeEEecCC
Q 015974 303 -FNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 303 -lng~~l~Gr~I~V~~a~ 319 (397)
||+..|.|+.|.|.++.
T Consensus 89 ~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 89 QYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp HHTTCEETTEECEEEEEC
T ss_pred HhCCCEeCCcEEEEEEeC
Confidence 99999999999999874
No 103
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=2e-15 Score=125.36 Aligned_cols=80 Identities=20% Similarity=0.373 Sum_probs=71.3
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+.+. +.++|||||+|.+.++|..|+
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~-------------------~~~kg~afV~f~~~~~A~~Ai 86 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNE-------------------RGSKGFGFVTFENSADADRAR 86 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBT-------------------TBCTTEEEEECCCSHHHHHHH
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECC-------------------CCCceEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999986542 125699999999999999999
Q ss_pred -HhcCceecceeeEEecCCC
Q 015974 302 -AFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~ 320 (397)
.|||..|.|+.|.|.++.+
T Consensus 87 ~~l~g~~~~g~~l~V~~a~~ 106 (109)
T 2err_A 87 EKLHGTVVEGRKIEVNNATA 106 (109)
T ss_dssp HHHTTCEETTEECEEEECCC
T ss_pred HHcCCCEECCEEEEEEECCC
Confidence 5999999999999999875
No 104
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.61 E-value=9.3e-16 Score=120.15 Aligned_cols=73 Identities=19% Similarity=0.229 Sum_probs=64.1
Q ss_pred cCEEEEecCCCCC------cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHH
Q 015974 225 LRTIFVGNLPLKV------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (397)
Q Consensus 225 ~rtVFVgNLp~~~------Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~ 298 (397)
+++|||+|||+.+ |+++|+.+|++||.|.+|+|+. .+|.++|||||+|.+.++|.
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~-------------------~~g~~~g~afV~f~~~~~A~ 61 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPE-------------------EDGKTKGYIFLEYASPAHAV 61 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCC-------------------BTTBCCCEEEEEESSHHHHH
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecC-------------------CCCcEeEEEEEEECCHHHHH
Confidence 3689999999999 7899999999999999998741 23456799999999999999
Q ss_pred HHH-HhcCceecce-eeEEe
Q 015974 299 AAL-AFNMAVIGGN-HIRLD 316 (397)
Q Consensus 299 ~Al-~lng~~l~Gr-~I~V~ 316 (397)
.|+ .|||..|.|+ .|+|.
T Consensus 62 ~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 62 DAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp HHHTTSSSCCCSSSSCCCCC
T ss_pred HHHHHhcCcccCCceeEEeC
Confidence 999 5999999999 88763
No 105
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=2.2e-15 Score=125.53 Aligned_cols=78 Identities=19% Similarity=0.380 Sum_probs=68.6
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|++||.|.+|+|++ ++|||||+|.+.++|..|+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~-----------------------~kGfaFVeF~~~~~A~~Ai 69 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLK-----------------------GKNQAFIEMNTEEAANTMV 69 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEc-----------------------CCCEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999999843 2489999999999999999
Q ss_pred H-hc--CceecceeeEEecCCCCc
Q 015974 302 A-FN--MAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 ~-ln--g~~l~Gr~I~V~~a~~~~ 322 (397)
. ++ +..|.|++|.|.++.+..
T Consensus 70 ~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 70 NYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp HHHTTSCCEETTEECCBCCCSSSS
T ss_pred HHhccCCceECCEEEEEEEcCCCC
Confidence 5 65 478999999999997643
No 106
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.60 E-value=5.7e-16 Score=119.47 Aligned_cols=75 Identities=19% Similarity=0.329 Sum_probs=66.7
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH-hc
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA-FN 304 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~-ln 304 (397)
++|||+|||+.+|+++|+.+|++||.|..|+++.++ .++.++|||||.|.+.++|..|+. ++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~a~~~~~ 63 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDP-----------------LTKRSRGFGFVTFMDQAGVDKVLAQSR 63 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCC-----------------CSSSCSSEEEECCCCTTHHHHHHHTTT
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCC-----------------CCCCcCceEEEEEcCHHHHHHHHHhCC
Confidence 469999999999999999999999999999986653 234577999999999999999995 66
Q ss_pred CceecceeeEEecC
Q 015974 305 MAVIGGNHIRLDRA 318 (397)
Q Consensus 305 g~~l~Gr~I~V~~a 318 (397)
..+.|+.|.|.++
T Consensus 64 -~~~~g~~l~v~~a 76 (77)
T 1uaw_A 64 -HELDSKTIDPKVA 76 (77)
T ss_dssp -CCCSSCCCEEEEC
T ss_pred -CccCCEEEEEEec
Confidence 9999999999886
No 107
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.60 E-value=5.9e-15 Score=117.70 Aligned_cols=76 Identities=20% Similarity=0.294 Sum_probs=69.1
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|+|+ +|||||+|.+.++|..|+
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~-------------------------~~~afV~f~~~~~a~~A~ 60 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVV-------------------------KDYAFVHMEKEADAKAAI 60 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 4457899999999999999999999999999999883 269999999999999999
Q ss_pred -HhcCceecceeeEEecCCCCc
Q 015974 302 -AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.||+..|.|+.|.|.++.+..
T Consensus 61 ~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 61 AQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp HHHTTCEETTEECEEEESCCCC
T ss_pred HHhCCCEECCcEEEEEECCCCC
Confidence 599999999999999998653
No 108
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.60 E-value=4e-15 Score=130.64 Aligned_cols=83 Identities=20% Similarity=0.288 Sum_probs=73.8
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++ .++.++|||||+|.+.++|..||.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~A~~Ai~ 99 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDK-----------------MKKTACGFCFVEYYSRADAENAMR 99 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-----------------TTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-----------------CCCccceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999997754 234567999999999999999995
Q ss_pred -hcCceecceeeEEecCCCCc
Q 015974 303 -FNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~~ 322 (397)
||+..|.|+.|.|.++.+..
T Consensus 100 ~l~g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 100 YINGTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp HTTTSEETTEECEEEEESCCC
T ss_pred HhCCCEECCeEEEEEECCCCC
Confidence 99999999999999997643
No 109
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.60 E-value=2.2e-15 Score=127.42 Aligned_cols=82 Identities=15% Similarity=0.217 Sum_probs=72.8
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++ .++.++|||||+|.+.++|..||
T Consensus 20 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~A~~ 82 (126)
T 3ex7_B 20 VEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDR-----------------RTGYLKGYTLVEYETYKEAQAAME 82 (126)
T ss_dssp SSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCT-----------------TTSSBCSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-----------------CCCccceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999886543 24557799999999999999999
Q ss_pred HhcCceecceeeEEecCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (397)
.||+..|.|+.|.|.++.+.
T Consensus 83 ~l~g~~~~g~~l~v~~a~~~ 102 (126)
T 3ex7_B 83 GLNGQDLMGQPISVDWCFVR 102 (126)
T ss_dssp HHTTCBSSSSBCEEEESEES
T ss_pred HhCCCeeCCeEEEEEEecCC
Confidence 59999999999999999643
No 110
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.60 E-value=3.4e-15 Score=127.85 Aligned_cols=81 Identities=27% Similarity=0.436 Sum_probs=71.1
Q ss_pred CCCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 221 EGKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 221 ~~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
.....++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..|
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~~a~~A 121 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDY-----------------ETEKHRGFAFVEFELAEDAAAA 121 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCT-----------------TTCCCCSEEEEEESCHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecC-----------------CCCCcCcEEEEEECCHHHHHHH
Confidence 34557999999999999999999999999999999886543 2345779999999999999999
Q ss_pred H-HhcCceecceeeEEecC
Q 015974 301 L-AFNMAVIGGNHIRLDRA 318 (397)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a 318 (397)
+ .||+..|.|+.|.|.+|
T Consensus 122 ~~~l~g~~~~g~~l~v~~A 140 (140)
T 2ku7_A 122 IDNMNESELFGRTIRVNLA 140 (140)
T ss_dssp HHHSTEEEETTEEEEEEC-
T ss_pred HHHhCCCEECCEEEEEEeC
Confidence 9 69999999999999875
No 111
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.60 E-value=3.4e-15 Score=130.92 Aligned_cols=83 Identities=25% Similarity=0.387 Sum_probs=73.9
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .+|.++|||||+|.+.++|..||
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~~ 130 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR-----------------YTKESRGFAFVRFHDKRDAEDAMD 130 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCS-----------------SCTTSCCEEEEEESBHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC-----------------CCCccceEEEEEECCHHHHHHHHH
Confidence 446899999999999999999999999999999986543 24567799999999999999999
Q ss_pred HhcCceecceeeEEecCCCCc
Q 015974 302 AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.|||..|.|+.|.|.++.+..
T Consensus 131 ~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 131 AMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp HSTTEESSSSEEEEEEECCSS
T ss_pred HhCCCEECCeEEEEEECCCCC
Confidence 599999999999999998643
No 112
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.60 E-value=8.2e-16 Score=127.15 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=72.0
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCC---eeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGE---IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~---I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~ 298 (397)
....++|||+|||+.+|+++|+.+|+.||. |..|+|+.++ . |+++|||||+|.+.++|.
T Consensus 8 ~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~-----------------~-g~~~G~afV~F~~~~~a~ 69 (107)
T 2lmi_A 8 VDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNR-----------------D-GKRRGDALIEMESEQDVQ 69 (107)
T ss_dssp CSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCT-----------------T-STTCSEEEEEBSSHHHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECC-----------------C-CCEeeEEEEEECCHHHHH
Confidence 345789999999999999999999999998 8889886543 1 457799999999999999
Q ss_pred HHHHhcCceecceeeEEecCCC
Q 015974 299 AALAFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 299 ~Al~lng~~l~Gr~I~V~~a~~ 320 (397)
.||.+|+..|.|+.|.|.++.+
T Consensus 70 ~Al~~~~~~~~gr~i~V~~a~~ 91 (107)
T 2lmi_A 70 KALEKHRMYMGQRYVEVYEINN 91 (107)
T ss_dssp HHHTTTTCCSSSSCCCCEECCH
T ss_pred HHHHhCcceeCCeEEEEEECCH
Confidence 9999999999999999999864
No 113
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=3.8e-15 Score=122.69 Aligned_cols=82 Identities=21% Similarity=0.321 Sum_probs=70.8
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCC-eeEEEEe-eecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIR-SVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~-I~~Iri~-~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
..++|||+|||+.+|+++|+.+|+.||. |..|.|+ .+. .++.++|||||+|.+.++|..|+
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~-----------------~~g~~~g~afV~f~~~~~A~~A~ 69 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAA-----------------DKMKNRGFAFVEYESHRAAAMAR 69 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSC-----------------TTTTTCCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCC-----------------CCCCcCcEEEEEecCHHHHHHHH
Confidence 4689999999999999999999999998 9999874 221 34567899999999999999999
Q ss_pred -Hhc--CceecceeeEEecCCCCc
Q 015974 302 -AFN--MAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 -~ln--g~~l~Gr~I~V~~a~~~~ 322 (397)
.|+ +..|.|+.|.|.++.+..
T Consensus 70 ~~l~~g~~~~~g~~l~V~~a~~~~ 93 (109)
T 2dis_A 70 RKLMPGRIQLWGHQIAVDWAEPEI 93 (109)
T ss_dssp TTTTTCCSCBTTBCCEEEESCSSC
T ss_pred HHhhCCCceecCCeEEEEEcCCCC
Confidence 485 589999999999998643
No 114
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.59 E-value=4.5e-16 Score=123.91 Aligned_cols=78 Identities=22% Similarity=0.387 Sum_probs=68.0
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hhc
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (397)
++|||+|||+.+|+++|+++|+.||.|.+|+++.++ .++.++|||||+|.+.+ |..|+ .||
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~~~~~g~afV~f~~~~-a~~a~~~l~ 63 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDR-----------------ETKKPKGFGFVEMQEES-VSEAIAKLD 63 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCS-----------------SSCCCCEEEEEEECTTH-HHHHHHTSC
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcC-----------------CCCCcceEEEEEECCHH-HHHHHHHhC
Confidence 579999999999999999999999999999986543 23557799999999999 99999 599
Q ss_pred CceecceeeEEecCCCC
Q 015974 305 MAVIGGNHIRLDRACPP 321 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~~ 321 (397)
|..+.|+.|.|.++.+.
T Consensus 64 g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 64 NTDFMGRTIRVTEANPK 80 (90)
T ss_dssp SSCCSSSSCSEEEC---
T ss_pred CCEECCeEEEEEEcCCC
Confidence 99999999999999764
No 115
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.59 E-value=1.7e-15 Score=131.69 Aligned_cols=81 Identities=16% Similarity=0.129 Sum_probs=72.4
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCC---eeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGE---IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~---I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~ 298 (397)
....++|||+|||+++|+++|+++|+.||. |..|+|++++ .|+++|||||+|.+.++|.
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~------------------~g~srG~aFV~F~~~e~a~ 102 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTR------------------EGRQSGEAFVELGSEDDVK 102 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECS------------------SSCEEEEEEEECSSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECC------------------CCCCCeEEEEEECCHHHHH
Confidence 345689999999999999999999999999 8889987754 1457799999999999999
Q ss_pred HHHHhcCceecceeeEEecCCC
Q 015974 299 AALAFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 299 ~Al~lng~~l~Gr~I~V~~a~~ 320 (397)
.||.+|+..|.||.|.|.++.+
T Consensus 103 ~Al~~~g~~l~gr~i~V~~a~~ 124 (136)
T 2hgl_A 103 MALKKDRESMGHRYIEVFKSHR 124 (136)
T ss_dssp HHHTTTEEESSSSEEEEEECCH
T ss_pred HHHhcCCCEECCEEEEEEECCh
Confidence 9999999999999999999864
No 116
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.59 E-value=3.4e-15 Score=123.63 Aligned_cols=75 Identities=19% Similarity=0.256 Sum_probs=66.7
Q ss_pred ccCEEEEecCCC-CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 224 LLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 224 ~~rtVFVgNLp~-~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
+.++|||+|||+ .+|+++|+.+|+.||.|.+|+|+. ++|||||+|.+.++|..|+
T Consensus 14 p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~ 70 (102)
T 1x4d_A 14 TRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILN-----------------------KINEAFIEMATTEDAQAAVD 70 (102)
T ss_dssp CCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECS-----------------------SSSCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEc-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 478999999999 999999999999999999998843 2489999999999999999
Q ss_pred HhcC--ceecceeeEEecCCCC
Q 015974 302 AFNM--AVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 ~lng--~~l~Gr~I~V~~a~~~ 321 (397)
.||+ ..|.|++|.|.++...
T Consensus 71 ~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 71 YYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp HHHHSCCEETTEECEEEEECCC
T ss_pred HHcCCCceECCcEEEEEECCCC
Confidence 5775 4699999999999754
No 117
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=3.3e-15 Score=124.98 Aligned_cols=77 Identities=17% Similarity=0.158 Sum_probs=69.2
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhc
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (397)
.++|||+|||+.+|+++|+++|+.| .|..|+|+.++ .|+++|||||+|.+.++|.+||.+|
T Consensus 16 ~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~------------------~g~~~G~afV~F~~~~~a~~Al~~~ 76 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDH------------------VGRNNGNGLVKFLSPQDTFEALKRN 76 (109)
T ss_dssp HHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCT------------------TCCCCSEEEEECSSHHHHHHHHHTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECC------------------CCCCCeEEEEEECCHHHHHHHHhcC
Confidence 5789999999999999999999999 78899986543 2457799999999999999999999
Q ss_pred CceecceeeEEecCCC
Q 015974 305 MAVIGGNHIRLDRACP 320 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (397)
+..|.||.|.|..+.+
T Consensus 77 ~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 77 RMLMIQRYVEVSPATE 92 (109)
T ss_dssp TEEETTEEEEEEECCH
T ss_pred CCeECCeEEEEEECCc
Confidence 9999999999988854
No 118
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=1.1e-14 Score=116.67 Aligned_cols=76 Identities=16% Similarity=0.306 Sum_probs=69.2
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|.++ +|||||+|.+.++|..|+
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~-------------------------~~~afV~f~~~~~a~~A~ 61 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIV-------------------------KDYAFVHMERAEDAVEAI 61 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEEC-------------------------SSEEEEEESCHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 4457899999999999999999999999999999883 259999999999999999
Q ss_pred -HhcCceecceeeEEecCCCCc
Q 015974 302 -AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.||+..|.|+.|.|.++.++.
T Consensus 62 ~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 62 RGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp HHHTTEEETTEEEEEEESSCCC
T ss_pred HHhCCCeeCCcEEEEEEccCCC
Confidence 699999999999999998654
No 119
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.59 E-value=1.4e-14 Score=117.44 Aligned_cols=76 Identities=24% Similarity=0.381 Sum_probs=68.6
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhccc--CCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKF--GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~--G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~ 299 (397)
....++|||+|||+.+|+++|+.+|+.| |.|..|.+ .+|||||+|.+.++|..
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~-------------------------~~g~afV~f~~~~~A~~ 66 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK-------------------------IRDYAFVHFSNREDAVE 66 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEE-------------------------CSSEEEEEESSHHHHHH
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE-------------------------eCCeEEEEeCCHHHHHH
Confidence 3457899999999999999999999999 99988876 23799999999999999
Q ss_pred HHH-hcCceecceeeEEecCCCCc
Q 015974 300 ALA-FNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 300 Al~-lng~~l~Gr~I~V~~a~~~~ 322 (397)
||. ||+..|.|+.|.|.++.+..
T Consensus 67 A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 67 AMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp HHHHHSSEEETTEEEEEECCCCCC
T ss_pred HHHHhCCCEeCCcEEEEEECCCCC
Confidence 995 99999999999999998654
No 120
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.59 E-value=7.1e-15 Score=117.21 Aligned_cols=76 Identities=17% Similarity=0.350 Sum_probs=69.4
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|+|+ +|||||+|.+.++|..|+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~g~afV~f~~~~~A~~A~~ 60 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-------------------------KNYGFVHIEDKTAAEDAIR 60 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-------------------------TTEEEEEESSHHHHHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999999999883 279999999999999999
Q ss_pred HhcCceecceeeEEecCCCCcc
Q 015974 302 AFNMAVIGGNHIRLDRACPPRK 323 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~k 323 (397)
.||+..|.|+.|.|.++.++..
T Consensus 61 ~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 61 NLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp HHTTCBCSSCBCEEECSSCCCC
T ss_pred HhcCCccCCcEEEEEECCCCCC
Confidence 6999999999999999986543
No 121
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.59 E-value=3.6e-15 Score=120.30 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=66.9
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
.+..||||||++.+|+++|+++|.+||+|.++++.. ++|||||+|.+.++|..|+ .
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-----------------------~kGfaFVey~~~~eA~~Ai~~ 62 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-----------------------NQGIALCKYTTREEANKAQMA 62 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-----------------------CCcEEEEEECCHHHHHHHHHH
Confidence 367799999999999999999999999999998732 4699999999999999999 6
Q ss_pred hcCceecceeeEEecCC
Q 015974 303 FNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~ 319 (397)
||+..+.|+.|+|..+.
T Consensus 63 Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 63 LNNCVLANTTIFAESPS 79 (89)
T ss_dssp HTTEEETTEEEEEECCC
T ss_pred hcCCEECCcEEEEEECC
Confidence 99999999999999873
No 122
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.59 E-value=7.1e-16 Score=125.54 Aligned_cols=81 Identities=19% Similarity=0.203 Sum_probs=70.3
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+.+|+.||.|.. .++.+. .++.++|||||+|.+.++|..||.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~~ 76 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDV-----------------RTGTNRKFGYVDFESAEDLEKALE 76 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEE-----------------EEETTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecC-----------------CCCCcCcEEEEEECCHHHHHHHHh
Confidence 34689999999999999999999999999876 332221 345678999999999999999999
Q ss_pred hcCceecceeeEEecCCCC
Q 015974 303 FNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (397)
||+..|.|+.|.|.++.+.
T Consensus 77 l~g~~~~g~~l~V~~a~~~ 95 (101)
T 1fj7_A 77 LTGLKVFGNEIKLEKPKGR 95 (101)
T ss_dssp GGGCCBTTBCCEEECCSCC
T ss_pred cCCcEECCcEEEEEEcCCC
Confidence 9999999999999999764
No 123
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.58 E-value=1.1e-15 Score=129.63 Aligned_cols=81 Identities=16% Similarity=0.278 Sum_probs=70.1
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+.+|+.||.|..+.++.+. .+|.++|||||+|.+.++|..||.
T Consensus 23 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~-----------------~~g~~~G~afV~F~~~~~a~~Al~ 85 (124)
T 1wel_A 23 EAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYG-----------------PNGKATGEGFVEFRNEADYKAALC 85 (124)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEEC-----------------TTSSEEEEEEEEBSSSHHHHHHHT
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEEC-----------------CCCCCCeEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999774443332 245567999999999999999999
Q ss_pred hcCceecceeeEEecCCC
Q 015974 303 FNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (397)
+|+..|.|+.|.|.++.+
T Consensus 86 ~~g~~~~gr~i~V~~a~~ 103 (124)
T 1wel_A 86 RHKQYMGNRFIQVHPITK 103 (124)
T ss_dssp SCSBCSTTSCBEEEEECH
T ss_pred hCCCeECCcEEEEEECCH
Confidence 999999999999999864
No 124
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.58 E-value=1.2e-15 Score=133.25 Aligned_cols=105 Identities=18% Similarity=0.182 Sum_probs=86.8
Q ss_pred CCcceEEEEecCHHHHHHHH-Hh-cCceecceeeEEecCCCCcccc-------CCCCCCccccccceecCCCCccCcHHH
Q 015974 282 ADSVHAYIVFKSEQSTEAAL-AF-NMAVIGGNHIRLDRACPPRKKL-------KGEDAPLYDIKKTVFVGNLPFDVKDEE 352 (397)
Q Consensus 282 ~skG~AFV~F~s~e~A~~Al-~l-ng~~l~Gr~I~V~~a~~~~k~~-------~~~~~~~~~~~~tLfVgNLp~~vteed 352 (397)
.-+|+++|+|.+.+.|++|+ .+ ||..+.| .|.+.++....... .........+.++|||+|||+.+++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 45799999999999999999 68 9999999 99999886421110 011122345678999999999999999
Q ss_pred HHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 353 IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 353 L~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
|+++|+.| |.|..|+|+++ ++|||||+|.+.++|.
T Consensus 90 l~~~F~~~----G~i~~v~i~~~-----~~g~afV~f~~~~~a~ 124 (150)
T 2i2y_A 90 LERAFGYY----GPLRSVWVARN-----PPGFAFVEFEDPRDAA 124 (150)
T ss_dssp HHHHHHHH----SCEEEEEECSS-----SCSEEEEEESSHHHHH
T ss_pred HHHHHHhh----CCEEEEEEeeC-----CCcEEEEEECCHHHHH
Confidence 99999999 99999999887 5899999999988774
No 125
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.58 E-value=8.2e-15 Score=119.19 Aligned_cols=80 Identities=26% Similarity=0.306 Sum_probs=68.7
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.| +++.+ .++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~------------------~~g~~~g~afV~f~~~~~A~~A~ 70 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN------------------QNGKSKGYAFIEFASFEDAKEAL 70 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC------------------SSSCBCSEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC------------------CCCCEeeEEEEEECCHHHHHHHH
Confidence 4457999999999999999999999999976 33222 23457799999999999999999
Q ss_pred H-hcCceecceeeEEecCCCCc
Q 015974 302 A-FNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 ~-lng~~l~Gr~I~V~~a~~~~ 322 (397)
. ||+..|.|+.|.|.++.++.
T Consensus 71 ~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 71 NSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp HHTSSEEETTEEEEEEECSSCC
T ss_pred HHhCCCEeCCeEEEEEEcCCCC
Confidence 5 99999999999999998654
No 126
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.58 E-value=9e-15 Score=118.97 Aligned_cols=74 Identities=27% Similarity=0.499 Sum_probs=67.8
Q ss_pred CCccCEEEEecCCC-CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 222 GKLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 222 ~~~~rtVFVgNLp~-~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
....++|||+|||+ .+|+++|+.+|+.||.|..|+| ++|||||+|.+.++|..|
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i-------------------------~~g~afV~f~~~~~A~~A 73 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINI-------------------------KNAFGFIQFDNPQSVRDA 73 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEE-------------------------CSSEEEEEESSHHHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEE-------------------------eCCEEEEEECCHHHHHHH
Confidence 34578999999999 9999999999999999999987 238999999999999999
Q ss_pred H-HhcCceecceeeEEecCCC
Q 015974 301 L-AFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~ 320 (397)
+ .|||..+.|+.|.|.++..
T Consensus 74 i~~l~g~~~~g~~l~V~~a~~ 94 (97)
T 2xnq_A 74 IEXESQEMNFGKKLILEVSSS 94 (97)
T ss_dssp HHHHTTSEETTEECEEEECCC
T ss_pred HHHcCCCEECCEEEEEEecCC
Confidence 9 5999999999999999865
No 127
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=4.7e-15 Score=120.05 Aligned_cols=77 Identities=18% Similarity=0.381 Sum_probs=68.2
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|. +.+++. .++|||||+|.+.++|..|+
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~---------------------~~~g~afV~f~~~~~a~~A~~ 74 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ---------------------GPRRRAFLHYPDSAAAQQAVS 74 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE---------------------TTTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC---------------------CCCcEEEEEECCHHHHHHHHH
Confidence 3468999999999999999999999999996 665432 35699999999999999999
Q ss_pred HhcCceecceeeEEecCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (397)
.|||..|.|+.|.|.++.++
T Consensus 75 ~l~g~~~~g~~l~V~~a~~~ 94 (97)
T 2e5j_A 75 CLQGLRLGTDTLRVALARQQ 94 (97)
T ss_dssp HHTTCCSSSSCCEEEECCCC
T ss_pred HhCCCEECCcEEEEEEcCCC
Confidence 69999999999999999764
No 128
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.58 E-value=5.3e-15 Score=120.30 Aligned_cols=74 Identities=19% Similarity=0.330 Sum_probs=67.9
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+.+|+++|+.+|+.||.|.+|+++ .++|||||+|.+.++|..|+ .
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~-----------------------~~~g~afV~f~~~~~A~~Ai~~ 82 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY-----------------------PEKGCCFIKYDTHEQAAVCIVA 82 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE-----------------------TTTTEEEEECSSHHHHHHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe-----------------------cCCCEEEEEECCHHHHHHHHHH
Confidence 46899999999999999999999999999999883 14589999999999999999 6
Q ss_pred hcCceecceeeEEecCCC
Q 015974 303 FNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (397)
|||..|.|+.|.|.++.+
T Consensus 83 l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 83 LANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp HTTCEETTEECCCCBCCC
T ss_pred hCCCeECCeEEEEEeccC
Confidence 999999999999999864
No 129
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=120.19 Aligned_cols=76 Identities=17% Similarity=0.306 Sum_probs=69.4
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+.+|+++|+.+|+.||.|..|+|+.. +|||||+|.+.++|..|+ .
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-----------------------~g~afV~f~~~~~a~~A~~~ 80 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----------------------KGYSFVRFSTHESAAHAIVS 80 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-----------------------TTEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-----------------------CCEEEEEECCHHHHHHHHHH
Confidence 4689999999999999999999999999999988432 489999999999999999 6
Q ss_pred hcCceecceeeEEecCCCCc
Q 015974 303 FNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (397)
|||..|.|+.|.|.++.+..
T Consensus 81 l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 81 VNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp HTTCEETTEECEEECCCCCC
T ss_pred cCCCEECCcEEEEEecCCCC
Confidence 99999999999999998653
No 130
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.57 E-value=5.5e-15 Score=124.11 Aligned_cols=79 Identities=20% Similarity=0.128 Sum_probs=68.7
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccC-CeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G-~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
....++|||+|||+.+|+++|+++|+.|| .|..|.|.. ..++|||||+|.+.++|..|
T Consensus 25 p~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~---------------------~~~rGfaFV~F~~~e~A~~A 83 (111)
T 2jvr_A 25 PAKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNT---------------------RDFDGTGALEFPSEEILVEA 83 (111)
T ss_dssp CCCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSS---------------------CSSSCCEEEEESSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEc---------------------CCCCCEEEEEECCHHHHHHH
Confidence 33467899999999999999999999999 898887722 12569999999999999999
Q ss_pred H-HhcCceecceeeEEecCCCC
Q 015974 301 L-AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~ 321 (397)
| .|||..|.|+.|.|.++..+
T Consensus 84 i~~lng~~l~Gr~i~V~~a~~~ 105 (111)
T 2jvr_A 84 LERLNNIEFRGSVITVERDDNP 105 (111)
T ss_dssp HHHTTTEEETTEEEEEEESCC-
T ss_pred HHHcCCCEECCeEEEEEECCCC
Confidence 9 69999999999999998643
No 131
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1.5e-14 Score=119.30 Aligned_cols=77 Identities=13% Similarity=0.258 Sum_probs=67.7
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+.+|+.||.|.+|+|+. .+|||||+|.+.++|..|+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~ 69 (101)
T 2cq1_A 13 APSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLK-----------------------GKNQAFLELATEEAAITMVN 69 (101)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 3568999999999999999999999999999998743 24899999999999999994
Q ss_pred -h--cCceecceeeEEecCCCCc
Q 015974 303 -F--NMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 303 -l--ng~~l~Gr~I~V~~a~~~~ 322 (397)
| ++..|.|++|.|.++.+..
T Consensus 70 ~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 70 YYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp HHHHSCCEETTEECEEEECSCSS
T ss_pred HhccCCceECCcEEEEEEcCccc
Confidence 4 5778999999999997643
No 132
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.57 E-value=4.1e-15 Score=119.82 Aligned_cols=79 Identities=25% Similarity=0.338 Sum_probs=70.2
Q ss_pred CccCEEEEecCCCCCcHHHHH----HHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~----~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~ 298 (397)
...++|||+|||+.+|+++|+ .+|+.||.|..|.++. ++.++|||||+|.+.++|.
T Consensus 6 ~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~--------------------~~~~~g~afV~f~~~~~A~ 65 (97)
T 1nu4_A 6 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSR--------------------SLKMRGQAFVIFKEVSSAT 65 (97)
T ss_dssp CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCH--------------------HHHHTTCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEc--------------------CCCcCcEEEEEeCCHHHHH
Confidence 346899999999999999999 9999999999988732 2346799999999999999
Q ss_pred HHH-HhcCceecceeeEEecCCCC
Q 015974 299 AAL-AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 299 ~Al-~lng~~l~Gr~I~V~~a~~~ 321 (397)
.|+ .|||..|.|+.|.|.++.+.
T Consensus 66 ~A~~~l~g~~~~g~~l~v~~a~~~ 89 (97)
T 1nu4_A 66 NALRSMQGFPFYDKPMRIQYAKTD 89 (97)
T ss_dssp HHHHHHTTCEETTEECEEEECSSC
T ss_pred HHHHHhCCCEECCcEEEEEEccCC
Confidence 999 59999999999999999764
No 133
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=1e-14 Score=121.21 Aligned_cols=80 Identities=21% Similarity=0.316 Sum_probs=70.1
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ ++.++|||||+|.+.++|..||
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~------------------~g~~~g~afV~f~~~~~a~~A~~ 84 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS------------------SGTSRGVGFARMESTEKCEAVIG 84 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS------------------SSCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC------------------CCCcceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999999999997653 2346799999999999999999
Q ss_pred HhcCcee--------cceeeEEecCCC
Q 015974 302 AFNMAVI--------GGNHIRLDRACP 320 (397)
Q Consensus 302 ~lng~~l--------~Gr~I~V~~a~~ 320 (397)
.|||..| .+++|.|.++.+
T Consensus 85 ~l~g~~~~~~~~~~~~~~~l~v~~a~p 111 (114)
T 1x5o_A 85 HFNGKFIKTPPGVSAPTEPLLCKFSGP 111 (114)
T ss_dssp HHBTCCCCCCTTSCCCSSCBEEEECCC
T ss_pred HhCCCEEcCCccccCCCCceeEEccCC
Confidence 5999999 577788888874
No 134
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.57 E-value=6.9e-15 Score=121.48 Aligned_cols=76 Identities=16% Similarity=0.173 Sum_probs=67.5
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
.++++|||+|||+.+|+++|+.+|++||.|.+|++++ ++|||||+|.+.++|..|+
T Consensus 19 ~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~-----------------------~kg~AFVef~~~~~A~~Av~ 75 (100)
T 3r27_A 19 PASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP-----------------------KKRQALVEFEDVLGACNAVN 75 (100)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999998842 3589999999999999999
Q ss_pred HhcCce--ecceeeEEecCCCC
Q 015974 302 AFNMAV--IGGNHIRLDRACPP 321 (397)
Q Consensus 302 ~lng~~--l~Gr~I~V~~a~~~ 321 (397)
.+++.. +.|++|.|.++.++
T Consensus 76 ~ln~~~~~i~Gr~i~V~~S~~k 97 (100)
T 3r27_A 76 YAADNQIYIAGHPAFVNYSTSQ 97 (100)
T ss_dssp HHHHSCEEETTEEEEEEECSCS
T ss_pred HhcCCCceeCCcEEEEEecccc
Confidence 588764 78999999999753
No 135
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.57 E-value=9.6e-15 Score=123.40 Aligned_cols=81 Identities=14% Similarity=0.231 Sum_probs=72.4
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|+|+.+. +|.++|||||+|.+.++|..|+.
T Consensus 33 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~------------------~g~~~g~afV~f~~~~~A~~Ai~ 94 (124)
T 2kt5_A 33 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR------------------SGRSLGTADVHFERRADALKAMK 94 (124)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS------------------SSSCCSEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC------------------CCCEeeEEEEEECCHHHHHHHHH
Confidence 446899999999999999999999999999999986642 34567999999999999999995
Q ss_pred -hcCceecceeeEEecCCCC
Q 015974 303 -FNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~ 321 (397)
|||..|.|+.|.|.++.+.
T Consensus 95 ~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 95 QYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp HHTTEESSSCEEEEEEECCT
T ss_pred HcCCCEECCcEEEEEEeCCC
Confidence 9999999999999999754
No 136
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.57 E-value=6.7e-15 Score=130.80 Aligned_cols=82 Identities=20% Similarity=0.263 Sum_probs=72.6
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.++ .+|.++|||||+|.+.++|..||
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~A~~Ai~ 132 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDR-----------------RTGFSKGYALVEYETHKQALAAKE 132 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-----------------TTSSEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecC-----------------CCCcEeeEEEEEECCHHHHHHHHH
Confidence 346889999999999999999999999999999997653 24556799999999999999999
Q ss_pred HhcCceecceeeEEecCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (397)
.|||..|.|+.|.|.++.+.
T Consensus 133 ~l~g~~~~g~~l~V~~a~~~ 152 (165)
T 1rk8_A 133 ALNGAEIMGQTIQVDWCFVK 152 (165)
T ss_dssp HHTTCEETTEECEEEESEEC
T ss_pred HhCCCEECCEEEEEEEecCC
Confidence 59999999999999998653
No 137
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.57 E-value=4.5e-15 Score=128.22 Aligned_cols=82 Identities=26% Similarity=0.387 Sum_probs=72.8
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ .++.++|||||+|.+.++|..|| .
T Consensus 46 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~-----------------~~g~~~G~afV~F~~~~~A~~Ai~~ 108 (135)
T 2lea_A 46 GMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDR-----------------YTKESRGFAFVRFHDKRDAEDAMDA 108 (135)
T ss_dssp GCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCS-----------------SSSSCCSCCEEECSCHHHHHHHHTT
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecC-----------------CCCccceEEEEEECCHHHHHHHHHH
Confidence 46889999999999999999999999999999886543 23557799999999999999999 5
Q ss_pred hcCceecceeeEEecCCCCc
Q 015974 303 FNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~~ 322 (397)
||+..|.|+.|.|.++.+..
T Consensus 109 l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 109 MDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp TTTCCSSSSCCEEEECCCCC
T ss_pred cCCCEECCEEEEEEECCCCC
Confidence 99999999999999997643
No 138
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.57 E-value=9.6e-15 Score=114.80 Aligned_cols=73 Identities=26% Similarity=0.490 Sum_probs=66.7
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|+++. ++|||||+|.+.++|..|+.
T Consensus 10 ~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~-----------------------~kg~afV~f~~~~~A~~a~~ 66 (85)
T 2ytc_A 10 KTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQ-----------------------RQQCAFIQFATRQAAEVAAE 66 (85)
T ss_dssp SSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEESSHHHHHHHHH
T ss_pred CCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEEC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 4568899999999999999999999999999998843 34899999999999999995
Q ss_pred -h-cCceecceeeEEecC
Q 015974 303 -F-NMAVIGGNHIRLDRA 318 (397)
Q Consensus 303 -l-ng~~l~Gr~I~V~~a 318 (397)
| ++..+.|+.|.|.++
T Consensus 67 ~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 67 KSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp TTTTTCEETTEECCEEEC
T ss_pred HhcCCeeECCCEEEEEec
Confidence 7 999999999999986
No 139
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.57 E-value=7.2e-15 Score=126.20 Aligned_cols=79 Identities=24% Similarity=0.333 Sum_probs=68.9
Q ss_pred CccCEEEEecCCCCCcHHHHH----HHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLI----KEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~----~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~ 298 (397)
...++|||+|||+.+++++|+ .+|++||.|.+|.+.. ++.++|||||+|.+.++|.
T Consensus 27 ~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~--------------------~~~~rG~aFV~F~~~~~A~ 86 (127)
T 2a3j_A 27 EPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL--------------------SDDNSGKAYIVFATQESAQ 86 (127)
T ss_dssp SCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC--------------------CCSSCCCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc--------------------CCCcCCEEEEEECCHHHHH
Confidence 346899999999999999865 7999999999887622 2346799999999999999
Q ss_pred HHH-HhcCceecceeeEEecCCCC
Q 015974 299 AAL-AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 299 ~Al-~lng~~l~Gr~I~V~~a~~~ 321 (397)
.|+ .|||..|.|+.|.|.++...
T Consensus 87 ~Ai~~lng~~l~gr~l~V~~a~~~ 110 (127)
T 2a3j_A 87 AFVEAFQGYPFQGNPLVITFSETP 110 (127)
T ss_dssp HHHHHSTTCCCTTSCCEEEECCCC
T ss_pred HHHHHHCCCEeCCCEEEEEEccCc
Confidence 999 69999999999999999754
No 140
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1e-14 Score=118.34 Aligned_cols=77 Identities=26% Similarity=0.433 Sum_probs=69.8
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|+++. ++|||||+|.+.++|..|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~-----------------------~kg~afV~f~~~~~a~~a~ 68 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHK-----------------------DKGFGFIRLETRTLAEIAK 68 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEET-----------------------TTTEEEEECSSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEec-----------------------CCCEEEEEECCHHHHHHHH
Confidence 34578999999999999999999999999999998842 3589999999999999999
Q ss_pred -HhcCceecceeeEEecCCCC
Q 015974 302 -AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~ 321 (397)
.||+..|.|+.|.|.++.+.
T Consensus 69 ~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 69 VELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp HHHTTCCBTTBCCEEEESSCC
T ss_pred HHhCCCEeCCceEEEEEcCCC
Confidence 69999999999999999764
No 141
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.57 E-value=1.2e-14 Score=120.47 Aligned_cols=77 Identities=19% Similarity=0.235 Sum_probs=67.2
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+.+|++||.|..|+|+. ++|||||+|.+.++|..|+.
T Consensus 13 ~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~Ai~ 69 (104)
T 1wex_A 13 SVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMP-----------------------FKRQALVEFENIDSAKECVT 69 (104)
T ss_dssp CCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEET-----------------------TTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 4578999999999999999999999999999998732 24899999999999999994
Q ss_pred -hcC--ceecceeeEEecCCCCc
Q 015974 303 -FNM--AVIGGNHIRLDRACPPR 322 (397)
Q Consensus 303 -lng--~~l~Gr~I~V~~a~~~~ 322 (397)
|++ ..|.|++|.|.++.+..
T Consensus 70 ~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 70 FAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp HHHHSCCBSSSSBCEEEECSSSS
T ss_pred HhccCCceECCEEEEEEEccCcc
Confidence 665 45899999999997654
No 142
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.3e-14 Score=123.55 Aligned_cols=77 Identities=18% Similarity=0.342 Sum_probs=67.9
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+.+|+.||.|.+|+|+.+ +|||||+|.+.++|..|+.
T Consensus 29 ~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-----------------------kG~AFVeF~~~e~A~~Ai~ 85 (119)
T 2ad9_A 29 VPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-----------------------KNQAFIEMNTEEAANTMVN 85 (119)
T ss_dssp SCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-----------------------GTEEEEECSCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-----------------------CCEEEEEECCHHHHHHHHH
Confidence 34689999999999999999999999999999998532 4899999999999999994
Q ss_pred -hc--CceecceeeEEecCCCCc
Q 015974 303 -FN--MAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 303 -ln--g~~l~Gr~I~V~~a~~~~ 322 (397)
++ +..|.|++|.|.++.+..
T Consensus 86 ~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 86 YYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp HHHHHCCCBTTBCCEEEECSSSS
T ss_pred HhccCCceECCeEEEEEEccCCC
Confidence 66 468999999999997644
No 143
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=4.2e-15 Score=124.00 Aligned_cols=74 Identities=18% Similarity=0.239 Sum_probs=67.2
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+.+|+++|+.+|++||.|..|.|+. ++|||||+|.+.++|..|| .
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~-----------------------~~g~afV~f~~~~~A~~Ai~~ 65 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE-----------------------GGITAIVEFLEPLEARKAFRH 65 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS-----------------------SSSCEEEEESCHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC-----------------------CCCEEEEEeCCHHHHHHHHHH
Confidence 468999999999999999999999999999887731 4589999999999999999 6
Q ss_pred hcCceecceeeEEecCCC
Q 015974 303 FNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~ 320 (397)
|||..|.|+.|.|.++..
T Consensus 66 l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 66 LAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp HTTCBSSSSBCEEEEEET
T ss_pred hCCCEECCeEEEEEECCC
Confidence 999999999999999853
No 144
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.2e-14 Score=117.56 Aligned_cols=76 Identities=25% Similarity=0.373 Sum_probs=68.5
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|.+++ .+|||||+|.+.++|..|+
T Consensus 15 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~-----------------------~~g~afV~f~~~~~A~~A~~ 71 (97)
T 1why_A 15 NPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVK-----------------------GDSFAYIQYESLDAAQAACA 71 (97)
T ss_dssp CCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECS-----------------------SSCCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeC-----------------------CCCEEEEEECCHHHHHHHHH
Confidence 3468899999999999999999999999999998832 2489999999999999999
Q ss_pred HhcCceec--ceeeEEecCCCC
Q 015974 302 AFNMAVIG--GNHIRLDRACPP 321 (397)
Q Consensus 302 ~lng~~l~--Gr~I~V~~a~~~ 321 (397)
.||+..|. |+.|.|.++.++
T Consensus 72 ~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 72 KMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp HHTTCBCSSSSCBCEEEECCCC
T ss_pred HHCCCEeCCCCcEEEEEECCCC
Confidence 59999999 999999999764
No 145
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.56 E-value=1.8e-14 Score=119.04 Aligned_cols=76 Identities=13% Similarity=0.152 Sum_probs=68.7
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|.|+.+ |||||+|.+.++|..||
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~------------------------g~afV~f~~~~~a~~Ai~ 68 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------------------------GTGVVEFVRKEDMTYAVR 68 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT------------------------TEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC------------------------CEEEEEECCHHHHHHHHH
Confidence 34689999999999999999999999999999988431 79999999999999999
Q ss_pred HhcCceecc-----eeeEEecCCCCc
Q 015974 302 AFNMAVIGG-----NHIRLDRACPPR 322 (397)
Q Consensus 302 ~lng~~l~G-----r~I~V~~a~~~~ 322 (397)
.||+..|.| +.|.|.++.++.
T Consensus 69 ~l~g~~~~g~~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 69 KLDNTKFRSHEGETAYIRVKVDGPRS 94 (108)
T ss_dssp HSSSEEEECTTSCEEEEEEEESSCCS
T ss_pred HHCcCCccCCcCcceEEEEEeCCCCC
Confidence 599999999 999999998643
No 146
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.56 E-value=2.6e-14 Score=116.93 Aligned_cols=75 Identities=28% Similarity=0.446 Sum_probs=68.3
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+++|+.||.|..|.|+ +|||||+|.+.++|..||
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-------------------------~~~afV~f~~~~~a~~A~~ 63 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-------------------------KDYAFIHFDERDGAVKAME 63 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-------------------------SSCEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEeCCHHHHHHHHH
Confidence 346889999999999999999999999999999872 269999999999999999
Q ss_pred HhcCceecceeeEEecCCCCc
Q 015974 302 AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.||+..|.|+.|.|.++.++.
T Consensus 64 ~l~g~~~~g~~l~v~~a~~~~ 84 (103)
T 2dgu_A 64 EMNGKDLEGENIEIVFAKPPD 84 (103)
T ss_dssp HHTTEEETTEEEEEEECCCCC
T ss_pred HHCCCccCCCEEEEEEcCCCc
Confidence 499999999999999997654
No 147
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.56 E-value=5e-15 Score=119.78 Aligned_cols=75 Identities=27% Similarity=0.470 Sum_probs=67.7
Q ss_pred CccCEEEEecCCC-CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 223 KLLRTIFVGNLPL-KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~-~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
...++|||+|||+ .+|+++|+.+|+.||.|..|+|. +|||||+|.+.++|..|+
T Consensus 8 ~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-------------------------~g~afV~f~~~~~A~~A~ 62 (96)
T 2kvi_A 8 PPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-------------------------NAFGFIQFDNPQSVRDAI 62 (96)
T ss_dssp -CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-------------------------TTEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-------------------------CCEEEEEECCHHHHHHHH
Confidence 3478999999999 99999999999999999999882 389999999999999999
Q ss_pred -HhcCceecceeeEEecCCCCc
Q 015974 302 -AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.||+..+.|+.|.|.++.+..
T Consensus 63 ~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 63 ECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp HHHTCSSCBTTTBCEEEEECCC
T ss_pred HHcCCCeeCCcEEEEEEcCcCC
Confidence 599999999999999987543
No 148
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.56 E-value=1.1e-14 Score=120.97 Aligned_cols=83 Identities=18% Similarity=0.228 Sum_probs=69.5
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|.+.... .++.++|||||+|.+.++|..||
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~-----------------~~g~~~g~afV~f~~~~~a~~Ai~ 85 (115)
T 2cpx_A 23 EPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRM-----------------MTGRMRGQAFITFPNKEIAWQALH 85 (115)
T ss_dssp SCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEE-----------------ECSSSCSEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEc-----------------CCCccceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999998543322211 13457799999999999999999
Q ss_pred HhcCceecceeeEEecCCCCc
Q 015974 302 AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.||+..|.|+.|.|.++.+..
T Consensus 86 ~l~g~~~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 86 LVNGYKLYGKILVIEFGKNKK 106 (115)
T ss_dssp HSTTCBCSSCBCEEEECCCCS
T ss_pred HhCCCEeCCcEEEEEEccCCC
Confidence 599999999999999998654
No 149
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.55 E-value=3.7e-15 Score=127.37 Aligned_cols=78 Identities=18% Similarity=0.313 Sum_probs=68.8
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCe----eEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEI----DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I----~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
.++|||+|||+.+|+++|+++|+.||.| ..|+|+.+. +|+++|||||+|.+.++|..|
T Consensus 23 ~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~------------------~gr~~G~aFV~F~~~~~A~~A 84 (123)
T 2dha_A 23 QVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYP------------------DGRPTGDAFVLFACEEYAQNA 84 (123)
T ss_dssp CCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECT------------------TSCEEEEEEECCSSHHHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECC------------------CCCEeeEEEEEECCHHHHHHH
Confidence 6889999999999999999999999975 578886542 345679999999999999999
Q ss_pred HHhcCceecceeeEEecCCC
Q 015974 301 LAFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~ 320 (397)
|..|+..|.||.|.|..+.+
T Consensus 85 l~~~~~~l~gR~i~V~~a~~ 104 (123)
T 2dha_A 85 LRKHKDLLGKRYIELFRSTA 104 (123)
T ss_dssp HTTTTEESSSCEECCEEECH
T ss_pred HHhCCCeeCCeEEEEEECCH
Confidence 98899999999999988753
No 150
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.55 E-value=1.1e-14 Score=117.30 Aligned_cols=77 Identities=29% Similarity=0.317 Sum_probs=67.2
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+.+|+++|+.+|+.||.|..+ . .++.++|||||+|.+.++|..|+.
T Consensus 14 ~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~---------------------~~~~~~g~afV~f~~~~~a~~A~~ 71 (96)
T 1fjc_A 14 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV-S---------------------QDGKSKGIAYIEFKSEADAEKNLE 71 (96)
T ss_dssp TGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-E---------------------ETTEEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-C---------------------CCCCcceEEEEEECCHHHHHHHHH
Confidence 457899999999999999999999999987654 1 134467999999999999999995
Q ss_pred -hcCceecceeeEEecCCCC
Q 015974 303 -FNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 303 -lng~~l~Gr~I~V~~a~~~ 321 (397)
|||..|.|+.|.|.++.++
T Consensus 72 ~l~g~~~~g~~l~v~~a~~~ 91 (96)
T 1fjc_A 72 EKQGAEIDGRSVSLYYTGEK 91 (96)
T ss_dssp HTTEEEETTEEEEEEECSSS
T ss_pred HhCCCEECCeEEEEEEcCCC
Confidence 9999999999999999754
No 151
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.54 E-value=4.4e-15 Score=121.04 Aligned_cols=78 Identities=15% Similarity=0.373 Sum_probs=70.4
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHh
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (397)
..++|||+|||+.+|+++|+.+|+.||.|..|+|+.++ ++.++|||||+|.+.++|..|+.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~a~~Ai~- 68 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR------------------TGVSKGYGFVSFYNDVDVQKIVE- 68 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT------------------TSCEEEEEEEEESSCCCHHHHTT-
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC------------------CCCccceEEEEECCHHHHHHHHh-
Confidence 46899999999999999999999999999999997653 24467999999999999999999
Q ss_pred cCceecceeeEEecCCC
Q 015974 304 NMAVIGGNHIRLDRACP 320 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~ 320 (397)
++..|.|+.|.|.++.+
T Consensus 69 ~~~~~~g~~l~v~~a~~ 85 (102)
T 2xs2_A 69 SQINFHGKKLKLGPAIR 85 (102)
T ss_dssp CCCEETTEECEEEEEEE
T ss_pred CCCeECCEEEEEEECCc
Confidence 99999999999999864
No 152
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.54 E-value=8.8e-15 Score=123.22 Aligned_cols=78 Identities=18% Similarity=0.254 Sum_probs=67.6
Q ss_pred CCccCEEEEecCCCC-CcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~-~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
....++|||+|||++ +|+++|+.+|+.||.|.+|+|++ ++|||||+|.+.++|..|
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~-----------------------~kg~aFVef~~~~~A~~A 78 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR-----------------------MKSQAFIEMETREDAMAM 78 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET-----------------------TTTEEEEECSSHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec-----------------------CCCEEEEEECCHHHHHHH
Confidence 344789999999998 99999999999999999998832 358999999999999999
Q ss_pred H-Hhc--CceecceeeEEecCCCCc
Q 015974 301 L-AFN--MAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 301 l-~ln--g~~l~Gr~I~V~~a~~~~ 322 (397)
+ .|+ +..|.|+.|.|.++....
T Consensus 79 i~~l~~~~~~l~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 79 VDHCLKKALWFQGRCVKVDLSEKYK 103 (112)
T ss_dssp HHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred HHHhccCCceECCEEEEEEECcccc
Confidence 9 465 557999999999997543
No 153
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.54 E-value=1e-14 Score=116.91 Aligned_cols=76 Identities=14% Similarity=0.218 Sum_probs=66.6
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCC-eeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGE-IDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~-I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
...++|||+|||+.+|+++|+.+|+.||. |..+.++ ++|||||+|.+.++|..|+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~------------------------~~g~afV~f~~~~~A~~A~ 61 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL------------------------KSGYAFVDYPDQNWAIRAI 61 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE------------------------ETTEEEECCSCHHHHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc------------------------CCCEEEEEECCHHHHHHHH
Confidence 34688999999999999999999999999 5555541 3489999999999999999
Q ss_pred -HhcC-ceecceeeEEecCCCCc
Q 015974 302 -AFNM-AVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 -~lng-~~l~Gr~I~V~~a~~~~ 322 (397)
.||+ ..|.|+.|.|.++.+..
T Consensus 62 ~~l~g~~~~~g~~l~v~~a~~~~ 84 (93)
T 2cqh_A 62 ETLSGKVELHGKIMEVDYSVSKK 84 (93)
T ss_dssp HHHTTTCEETTEECEEEECCCCC
T ss_pred HHccCCeeECCEEEEEEEccCcc
Confidence 5999 99999999999998653
No 154
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.54 E-value=2.4e-14 Score=118.48 Aligned_cols=74 Identities=26% Similarity=0.479 Sum_probs=67.9
Q ss_pred ccCEEEEecCCCC-CcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 224 LLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 224 ~~rtVFVgNLp~~-~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
..++|||+|||+. +|+++|+.+|+.||.|..|.| ++|||||+|.+.++|..||
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-------------------------~~g~afV~f~~~~~A~~A~~ 80 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-------------------------HKGYAFVQYSNERHARAAVL 80 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-------------------------ETTEEEEECSSSHHHHHHHH
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-------------------------eCCEEEEEECCHHHHHHHHH
Confidence 4589999999999 999999999999999999987 2389999999999999999
Q ss_pred HhcCceecceeeEEecCCCCc
Q 015974 302 AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.||+..|.|+.|.|.++.++.
T Consensus 81 ~l~g~~~~g~~l~V~~a~~~~ 101 (110)
T 1wf1_A 81 GENGRVLAGQTLDINMAGEPK 101 (110)
T ss_dssp HHTTCEETTEECCEEESCCCC
T ss_pred HcCCCEECCeEEEEEECCCCC
Confidence 799999999999999997543
No 155
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.54 E-value=8.9e-15 Score=125.60 Aligned_cols=79 Identities=20% Similarity=0.262 Sum_probs=68.6
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCee--EEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEID--SVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~--~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
...++|||+|||+.+|+++|+++|+.|+ |. +|+|++++ .|+++|||||+|.+.++|.+|
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~~-i~~~~v~i~~d~------------------~GrsrGfaFV~F~~~e~A~~A 100 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGLE-IVPNGITLPVDP------------------EGKITGEAFVQFASQELAEKA 100 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEEECCCCS------------------SSSSCSEEEEEESSTTHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCC-ceeeEEEEEECC------------------CCCCceEEEEEECCHHHHHHH
Confidence 3468899999999999999999999994 66 78876543 255779999999999999999
Q ss_pred HHhcCceecceeeEEecCCC
Q 015974 301 LAFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 301 l~lng~~l~Gr~I~V~~a~~ 320 (397)
|.+++..|.||.|.|..+.+
T Consensus 101 l~~~~~~l~gR~I~V~~a~~ 120 (126)
T 2hgm_A 101 LGKHKERIGHRYIEVFKSSQ 120 (126)
T ss_dssp HTTTTCCBTTBCCCCEEECH
T ss_pred HHHCCCEECCEEEEEEECCH
Confidence 98888999999999988754
No 156
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.54 E-value=8.6e-15 Score=137.53 Aligned_cols=80 Identities=14% Similarity=0.179 Sum_probs=71.4
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccC--CeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG--EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G--~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
..++|||+|||+.+|+++|+.+|+.|| .|.+|+|++++ .+++++|||||+|.+.++|.+||
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~-----------------~tg~skGfaFV~f~~~~~a~~Ai 129 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENR-----------------ANGQSKGFALVGVGSEASSKKLM 129 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECT-----------------TTCCEEEEEEEEESCTTHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecC-----------------CCCccceEEEEEECCHHHHHHHH
Confidence 467899999999999999999999999 99999997764 24567899999999999999999
Q ss_pred -HhcCceecceeeEEecCCC
Q 015974 302 -AFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~ 320 (397)
.||+..|.|+.|.|.++.+
T Consensus 130 ~~lng~~~~Gr~l~V~~a~~ 149 (229)
T 3q2s_C 130 DLLPKRELHGQNPVVTPVNK 149 (229)
T ss_dssp TTSTTSCBTTBCCEEEECCH
T ss_pred HHcCCCeECCEEeEEEECCC
Confidence 4999999999999999864
No 157
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.54 E-value=1.5e-14 Score=126.20 Aligned_cols=78 Identities=21% Similarity=0.316 Sum_probs=70.4
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|.+|+|+.+ ++|||||+|.+.++|..||
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~A~ 127 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARN----------------------PPGFAFVEFEDPRDAADAV 127 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSS----------------------SCSEEEEEESSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeC----------------------CCcEEEEEECCHHHHHHHH
Confidence 445789999999999999999999999999999998442 3589999999999999999
Q ss_pred -HhcCceecceeeEEecCCCC
Q 015974 302 -AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~ 321 (397)
.|||..|.|+.|.|.++.++
T Consensus 128 ~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 128 RELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHSSSCSSSSCCEEEECCCC
T ss_pred HHcCCCEECCeEEEEEEcCCC
Confidence 59999999999999999764
No 158
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.54 E-value=2.5e-14 Score=118.78 Aligned_cols=76 Identities=21% Similarity=0.326 Sum_probs=69.3
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+.+|+.||.|..|.|+ +|||||+|.+.++|..|+
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-------------------------kg~afV~f~~~~~A~~Ai 82 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-------------------------NGFAFVEFEEAESAAKAI 82 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-------------------------TTEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-------------------------CCEEEEEECCHHHHHHHH
Confidence 3457899999999999999999999999999999883 289999999999999999
Q ss_pred -HhcCceecceeeEEecCCCCc
Q 015974 302 -AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.|||..|.|+.|.|.++.++.
T Consensus 83 ~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 83 EEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp HHHTTCEETTEECEEESCSCCC
T ss_pred HHcCCCEECCeEEEEEEecCCC
Confidence 599999999999999997643
No 159
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=3.7e-14 Score=115.32 Aligned_cols=82 Identities=27% Similarity=0.343 Sum_probs=68.9
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....++|||+|||+.+|+++|+++|+.|+ .|.++.+. .++.++|||||+|.+.++|..||
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~-----------------~~~~~~g~afV~f~~~~~A~~A~ 71 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDR-----------------ETGSSKGFGFVDFNSEEDAKAAK 71 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECS-----------------SSCSEEEEEEEECSSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecC-----------------CCCCcCcEEEEEECCHHHHHHHH
Confidence 34578899999999999999999999885 45565443 23456799999999999999999
Q ss_pred -HhcCceecceeeEEecCCCCcc
Q 015974 302 -AFNMAVIGGNHIRLDRACPPRK 323 (397)
Q Consensus 302 -~lng~~l~Gr~I~V~~a~~~~k 323 (397)
.||+..|.|+.|.|.++.++..
T Consensus 72 ~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 72 EAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp HHHTTCEETTEECEEEECCCCCS
T ss_pred HHhCCCeECCeEEEEEEecCCCC
Confidence 5999999999999999986543
No 160
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.53 E-value=2.2e-14 Score=113.09 Aligned_cols=72 Identities=26% Similarity=0.546 Sum_probs=65.5
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhccc----C-------CeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEe
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKF----G-------EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVF 291 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~----G-------~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F 291 (397)
+..++|||+|||+.+|+++|+.+|+.| | .|.+|+++. ++|||||+|
T Consensus 4 ~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~-----------------------~kg~afV~f 60 (87)
T 2hzc_A 4 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQ-----------------------DKNFAFLEF 60 (87)
T ss_dssp GGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECS-----------------------SSSEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecC-----------------------CCcEEEEEc
Confidence 457899999999999999999999999 8 898888732 358999999
Q ss_pred cCHHHHHHHHHhcCceecceeeEEec
Q 015974 292 KSEQSTEAALAFNMAVIGGNHIRLDR 317 (397)
Q Consensus 292 ~s~e~A~~Al~lng~~l~Gr~I~V~~ 317 (397)
.+.++|..|+.||+..|.|+.|.|.+
T Consensus 61 ~~~~~a~~A~~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 61 RSVDETTQAMAFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SSHHHHHHHGGGTTCEETTEECEEEC
T ss_pred CCHHHHHHHHhcCCCEECCeEEEEeC
Confidence 99999999999999999999999975
No 161
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.30 E-value=5.9e-16 Score=129.43 Aligned_cols=84 Identities=23% Similarity=0.269 Sum_probs=72.9
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeE--------EEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDS--------VRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSE 294 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~--------Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~ 294 (397)
...++|||+|||+.+|+++|+.+|+.||.|.. |+|+.++ .++.++|||||+|.+.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~-----------------~~g~~~g~afV~f~~~ 67 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDR-----------------ETGKLKGEATVSFDDP 67 (116)
Confidence 44688999999999999999999999999988 6665442 2456779999999999
Q ss_pred HHHHHHHH-hcCceecceeeEEecCCCCcc
Q 015974 295 QSTEAALA-FNMAVIGGNHIRLDRACPPRK 323 (397)
Q Consensus 295 e~A~~Al~-lng~~l~Gr~I~V~~a~~~~k 323 (397)
++|..||. ||+..|.|+.|.|.++.+...
T Consensus 68 ~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 68 PSAKAAIDWFDGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 99999994 999999999999999986543
No 162
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.53 E-value=3.6e-15 Score=130.09 Aligned_cols=80 Identities=18% Similarity=0.172 Sum_probs=70.2
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...++|||+|||+++|+++|+++|+.|| |..|+|+.++ .++++|||||+|.+.++|..||.
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~------------------~g~srGfaFV~F~~~e~A~~Al~ 104 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGP------------------DGRVTGEADVEFATHEEAVAAMS 104 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSS------------------SSCSSCCCEEECSHHHHHHHHTT
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECC------------------CCCCceEEEEEeCCHHHHHHHHh
Confidence 3467899999999999999999999999 6688886543 24577999999999999999999
Q ss_pred hcCceecceeeEEecCCCC
Q 015974 303 FNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (397)
+|+..|.|+.|.|..+.+.
T Consensus 105 ~~g~~l~gR~i~V~~a~~~ 123 (139)
T 2hgn_A 105 KDRANMQHRYIELFLNSTT 123 (139)
T ss_dssp CCSCSSSSCCCCCEECCCS
T ss_pred hCCCEECCEEEEEEECCCC
Confidence 9999999999999998764
No 163
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.52 E-value=6.4e-14 Score=112.67 Aligned_cols=77 Identities=25% Similarity=0.382 Sum_probs=66.1
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHh
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (397)
..++|||+|||+.+|+++|+.+|+.||.|.+|. .+. .++ + ||||+|.+.++|..||.|
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~--~~~-----------------~~g--~-~afV~f~~~~~a~~ai~l 64 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVV--MDK-----------------DKG--V-FAIVEMGDVGAREAVLSQ 64 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEE--ECS-----------------SSC--C-EEEEEESSHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEE--EcC-----------------CCC--c-EEEEEECCHHHHHHHHhc
Confidence 467999999999999999999999999999872 221 111 1 999999999999999999
Q ss_pred cCceecceeeEEecCCCCc
Q 015974 304 NMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~ 322 (397)
|+..|.|+.|.|.++.+..
T Consensus 65 ~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 65 SQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp SCCEETTEECCCBCSCCSC
T ss_pred CCeEECCEEEEEEECCcCC
Confidence 9999999999999887543
No 164
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.52 E-value=4.1e-14 Score=113.47 Aligned_cols=75 Identities=20% Similarity=0.313 Sum_probs=60.8
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
.....+|||+|||+++|+++|+++|++||.|.+|+|+++ ++|||||+|.+.++|.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~----------------------srGfaFV~F~~~~~A~~-- 63 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP----------------------FRAFAFVTFADDKVAQS-- 63 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS----------------------CCSEEEEEESCHHHHHH--
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC----------------------CCCEEEEEECCHHHHHH--
Confidence 345789999999999999999999999999999988431 46999999999999884
Q ss_pred HhcCce--ecceeeEEecCCCC
Q 015974 302 AFNMAV--IGGNHIRLDRACPP 321 (397)
Q Consensus 302 ~lng~~--l~Gr~I~V~~a~~~ 321 (397)
+++.. +.|+.|.|.++.++
T Consensus 64 -~~~~~~~~~g~~v~v~~a~~k 84 (89)
T 3d2w_A 64 -LCGEDLIIKGISVHISNAEPK 84 (89)
T ss_dssp -HTTCEEEETTEEEEEEECC--
T ss_pred -HcCCCcccCCEEEEEEEcCCC
Confidence 45554 45999999998764
No 165
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.51 E-value=3.1e-14 Score=123.16 Aligned_cols=85 Identities=24% Similarity=0.211 Sum_probs=69.1
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEE--EeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVR--IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAA 300 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Ir--i~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~A 300 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|. ++.+. ....++.++|||||.|.+.++|..|
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di--------------~~~~~g~~~g~afV~f~~~~~A~~A 108 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDI--------------RLMKEGRMKGQAFIGLPNEKAAAKA 108 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEE--------------EEEEETTTEEEEEEECSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeE--------------EeccCCCcccEEEEEeCCHHHHHHH
Confidence 4468999999999999999999999999987641 11100 0012456789999999999999999
Q ss_pred H-HhcCceecceeeEEecCCCC
Q 015974 301 L-AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 301 l-~lng~~l~Gr~I~V~~a~~~ 321 (397)
| .|||..|.|+.|.|.++.+.
T Consensus 109 i~~lng~~~~g~~l~V~~a~~~ 130 (143)
T 3egn_A 109 LKEANGYVLFGKPMVVQFARSA 130 (143)
T ss_dssp HHHHTTBEETTEECEEEECCCS
T ss_pred HHHhCCCEeCCcEEEEEECCCC
Confidence 9 59999999999999999753
No 166
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.51 E-value=1.8e-14 Score=125.84 Aligned_cols=80 Identities=18% Similarity=0.300 Sum_probs=71.8
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhc
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (397)
.++|||+|||+.+|+++|+++|+.||.|..|+++.++ .+|.++|||||.|.+.++|.+|+.++
T Consensus 87 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-----------------~~g~~~g~afV~f~~~~~a~~A~~~~ 149 (167)
T 2cjk_A 87 TGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDK-----------------DTGQSRGFGFVTYDSADAVDRVCQNK 149 (167)
T ss_dssp CEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSS-----------------SSSTTSEEEEEEESSHHHHHHHHHCS
T ss_pred CCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcC-----------------CCCccceEEEEEECCHHHHHHHHhCC
Confidence 4679999999999999999999999999999986543 24567799999999999999999999
Q ss_pred CceecceeeEEecCCCC
Q 015974 305 MAVIGGNHIRLDRACPP 321 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~~ 321 (397)
+..+.|+.|.|.++.++
T Consensus 150 ~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 150 FIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EECSSSSCEEEEECCCC
T ss_pred CEEeCCeEEEEeecCCC
Confidence 99999999999999753
No 167
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.51 E-value=4e-14 Score=113.90 Aligned_cols=77 Identities=13% Similarity=0.279 Sum_probs=67.8
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEE-EeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVR-IRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Ir-i~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
..++|||+|||+.+|+++|+.+|+.||.|..|+ |+.++ ..|.|||+|.+.++|..|+
T Consensus 14 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~---------------------~~~~afV~f~~~~~a~~Ai~ 72 (96)
T 2e44_A 14 RIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDS---------------------ETAVVNVTYSSKDQARQALD 72 (96)
T ss_dssp SCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSS---------------------SSEEEEEEESSHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---------------------CCCEEEEEECCHHHHHHHHH
Confidence 368899999999999999999999999999995 64432 2255999999999999999
Q ss_pred HhcCceecceeeEEecCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (397)
.|||..|.|+.|.|.++.+.
T Consensus 73 ~l~g~~~~g~~l~V~~a~~~ 92 (96)
T 2e44_A 73 KLNGFQLENFTLKVAYIPDE 92 (96)
T ss_dssp HHTTCBCSSCBCEEEECCCC
T ss_pred HhCCCEECCcEEEEEEcCcc
Confidence 59999999999999999764
No 168
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.51 E-value=8.3e-14 Score=120.83 Aligned_cols=80 Identities=20% Similarity=0.306 Sum_probs=71.8
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+++|+.||.|..|.++.++ .++.++|||||.|.+.++|..|+
T Consensus 85 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-----------------~~~~~~g~afV~f~~~~~A~~A~~ 147 (166)
T 3md3_A 85 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDM-----------------QTGSSRGYGFVSFTSQDDAQNAMD 147 (166)
T ss_dssp TTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECT-----------------TTCCEEEEEEEEESCHHHHHHHHH
T ss_pred CCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecC-----------------CCCCcceEEEEEeCCHHHHHHHHH
Confidence 346889999999999999999999999999999997654 23456799999999999999999
Q ss_pred HhcCceecceeeEEecCC
Q 015974 302 AFNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~ 319 (397)
.|||..+.|+.|.|.++.
T Consensus 148 ~l~g~~~~g~~i~v~~a~ 165 (166)
T 3md3_A 148 SMQGQDLNGRPLRINWAA 165 (166)
T ss_dssp HHTTCEETTEECEEEESC
T ss_pred HhCCCccCCcEEEEEecC
Confidence 599999999999999985
No 169
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.50 E-value=1.7e-13 Score=110.79 Aligned_cols=75 Identities=16% Similarity=0.265 Sum_probs=67.1
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|| .+|+++|+.+|+.||.|..|.|. .++|||||+|.+.++|..||
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~-----------------------~~~g~afV~f~~~~~a~~Ai~ 67 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----------------------PPRNCAFVTYEKMESADQAVA 67 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE-----------------------TTTTEEEEEESSHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec-----------------------CCCCEEEEEECCHHHHHHHHH
Confidence 34689999996 89999999999999999999872 25689999999999999999
Q ss_pred HhcCceecceeeEEecCCCCc
Q 015974 302 AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.||+..|.|+.|.|.++.++.
T Consensus 68 ~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 68 ELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp HTTTEEETTEEEEEECCSSCC
T ss_pred HhCCCeECCeEEEEEECCCCC
Confidence 799999999999999997643
No 170
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.50 E-value=6.7e-14 Score=125.32 Aligned_cols=81 Identities=17% Similarity=0.386 Sum_probs=71.2
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhc
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (397)
.++|||+|||+.+|+++|+++|+.||.|..|+|+.+. .++.++|||||.|.+.++|.+||..+
T Consensus 104 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-----------------~~g~~~g~afV~F~~~~~A~~A~~~~ 166 (196)
T 1l3k_A 104 VKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDR-----------------GSGKKRGFAFVTFDDHDSVDKIVIQK 166 (196)
T ss_dssp CSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECT-----------------TTCCEEEEEEEEESSHHHHHHHHHCS
T ss_pred cceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecC-----------------CCCCccceEEEEECCHHHHHHHHHhC
Confidence 5889999999999999999999999999999997653 23456799999999999999999889
Q ss_pred CceecceeeEEecCCCCc
Q 015974 305 MAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~~~ 322 (397)
+..|.|+.|.|.++.++.
T Consensus 167 ~~~~~G~~i~v~~a~~k~ 184 (196)
T 1l3k_A 167 YHTVNGHNCEVRKALSKQ 184 (196)
T ss_dssp CCEETTEECEEEECC---
T ss_pred CcEECCEEEEEEecCChh
Confidence 999999999999998654
No 171
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.49 E-value=4.7e-14 Score=111.94 Aligned_cols=77 Identities=19% Similarity=0.292 Sum_probs=64.3
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHh
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (397)
..++|||+|||+.+|+++|+.+|+.||.|.+|+|+.+ ++|||||+|.+.++|++|+..
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~----------------------~~g~afV~f~~~~~a~~~~~~ 61 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP----------------------FRAFAFVTFADDQIAQSLCGE 61 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS----------------------CCSCCEEECSCHHHHHHTTTC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC----------------------CCCEEEEEECCHHHHHHHhcC
Confidence 4689999999999999999999999999999988431 458999999999999865432
Q ss_pred cCceecceeeEEecCCCCcc
Q 015974 304 NMAVIGGNHIRLDRACPPRK 323 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~k 323 (397)
...+.|+.|.|.++.++..
T Consensus 62 -~~~~~g~~l~v~~a~~~~~ 80 (88)
T 1wf0_A 62 -DLIIKGISVHISNAEPKHN 80 (88)
T ss_dssp -EEEETTEEEEEECCCCCCC
T ss_pred -CceeCCEEEEEEecCCCCC
Confidence 3456899999999986543
No 172
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.49 E-value=5.7e-14 Score=111.72 Aligned_cols=74 Identities=12% Similarity=0.223 Sum_probs=66.6
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
+..++|||+|||+.+|+++|+.+|++| .|..|++. .++|||||+|.+.++|..|+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-----------------------~~~g~afV~f~~~~~a~~Ai~ 58 (88)
T 1wg1_A 3 SGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-----------------------RNKRTAFVTLLNGEQAQNAIQ 58 (88)
T ss_dssp CCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-----------------------GGGTEEEECCSCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-----------------------CCCcEEEEEECCHHHHHHHHH
Confidence 346889999999999999999999999 89988872 14589999999999999999
Q ss_pred HhcCceecceeeEEecCCC
Q 015974 302 AFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~ 320 (397)
.|||..+.|+.|.|.++..
T Consensus 59 ~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 59 MFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp HHTTEEETTEEEEEEECCC
T ss_pred HhCCCeECCcEEEEEEcCC
Confidence 5999999999999999853
No 173
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.49 E-value=1e-13 Score=125.96 Aligned_cols=81 Identities=22% Similarity=0.457 Sum_probs=72.9
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.++|||+|||+.+|+++|+++|+.||.|..|+|+.++ .++.++|||||+|.+.++|..|+ .|
T Consensus 125 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-----------------~~g~~~g~afV~F~~~~~A~~A~~~l 187 (216)
T 2qfj_A 125 FNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDP-----------------TTGKHKGYGFIEYEKAQSSQDAVSSM 187 (216)
T ss_dssp SCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECT-----------------TTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecC-----------------CCCCcCceEEEEecCHHHHHHHHHHc
Confidence 5789999999999999999999999999999997654 23456799999999999999999 59
Q ss_pred cCceecceeeEEecCCCCc
Q 015974 304 NMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~~ 322 (397)
||..|.|+.|.|.++.++.
T Consensus 188 ~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 188 NLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp TTCBCSSSBCEEEECSSCS
T ss_pred cCCEeCCcEEEEEEecCCC
Confidence 9999999999999998653
No 174
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.48 E-value=7.9e-14 Score=122.26 Aligned_cols=78 Identities=17% Similarity=0.330 Sum_probs=70.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.++|||+|||+.+|+++|+++|+.||.|..|+++.++ .+|.++|||||.|.+.++|.+|+ .|
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~-----------------~~g~~~g~afV~f~~~~~A~~A~~~l 156 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS-----------------ATGLSKGYAFCEYVDINVTDQAIAGL 156 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT-----------------TTCSEEEEEEEEESSTTHHHHHHHHH
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC-----------------CCCCcceEEEEEeCCHHHHHHHHHHc
Confidence 6889999999999999999999999999999997653 23456799999999999999999 59
Q ss_pred cCceecceeeEEecCC
Q 015974 304 NMAVIGGNHIRLDRAC 319 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~ 319 (397)
||..|.|+.|.|.+|.
T Consensus 157 ~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 157 NGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCEETTEECEEEECC
T ss_pred CCCEECCeEEEEEeCC
Confidence 9999999999999873
No 175
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.47 E-value=1.3e-13 Score=126.22 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=69.7
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhc
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (397)
.++|||+|||+.+|+++|+.+|+.||.|.+|+|+++. ++.++|||||+|.+.++|..||.+.
T Consensus 109 ~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~------------------~~~~kG~aFVeF~~~e~A~~A~~~~ 170 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTL------------------HKAFKGSIFVVFDSIESAKKFVETP 170 (193)
T ss_dssp HTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECT------------------TCCEEEEEEEEESSHHHHHHHHHCT
T ss_pred cCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECC------------------CCCcccEEEEEECCHHHHHHHHHhC
Confidence 5889999999999999999999999999999997653 2346799999999999999999866
Q ss_pred CceecceeeEEecCCC
Q 015974 305 MAVIGGNHIRLDRACP 320 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (397)
+..|.|+.|.|.+...
T Consensus 171 ~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 171 GQKYKETDLLILFKDD 186 (193)
T ss_dssp TCEETTEECEEEETTT
T ss_pred CCeECCEEEEEEEhHH
Confidence 7799999999998754
No 176
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.47 E-value=8.8e-14 Score=125.65 Aligned_cols=80 Identities=14% Similarity=0.235 Sum_probs=71.7
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+++|+.||.|..|.|+.+. ++.++|||||+|.+.++|..||
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~------------------~g~~kG~afV~F~~~~~A~~Ai~ 147 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR------------------SGRSLGTADVHFERRADALKAMK 147 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT------------------TSSCSCCEEEEESCHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC------------------CCCEeeEEEEEeCCHHHHHHHHH
Confidence 446899999999999999999999999999999985542 3456799999999999999999
Q ss_pred HhcCceecceeeEEecCCC
Q 015974 302 AFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~ 320 (397)
.||+..|.|+.|.|.++..
T Consensus 148 ~lng~~l~Gr~l~V~~a~~ 166 (177)
T 2f3j_A 148 QYKGVPLDGRPMDIQLVAS 166 (177)
T ss_dssp HSTTCBCSSSBCEEEEESS
T ss_pred HhCCCEECCEEEEEEEecC
Confidence 4999999999999999875
No 177
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.47 E-value=1.4e-13 Score=126.67 Aligned_cols=78 Identities=22% Similarity=0.386 Sum_probs=70.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.++|||+|||+.+|+++|+++|+.||.|..|+|+++. +.++|||||+|.+.++|.+|| .|
T Consensus 103 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~-------------------~~~~g~~fV~f~~~~~a~~Ai~~l 163 (213)
T 4f02_A 103 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE-------------------NGSKGYGFVHFETQEAAERAIEKM 163 (213)
T ss_dssp TTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET-------------------TEEEEEEEEEESSHHHHHHHHHHH
T ss_pred cccceECCcccccHHHHHHHHHhhcCCeEEEEeeccC-------------------CCCceEEEEEeCCHHHHHHHHHHh
Confidence 4679999999999999999999999999999997653 125699999999999999999 69
Q ss_pred cCceecceeeEEecCCCC
Q 015974 304 NMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 304 ng~~l~Gr~I~V~~a~~~ 321 (397)
||..|.|+.|.|.++.+.
T Consensus 164 ng~~~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 164 NGMLLNDRKVFVGRFKSR 181 (213)
T ss_dssp TTCEETTEECEEEECCCH
T ss_pred CCCEECCEEEEEEEcCCC
Confidence 999999999999999764
No 178
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.47 E-value=1.4e-13 Score=123.31 Aligned_cols=83 Identities=16% Similarity=0.288 Sum_probs=73.7
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|+++.++ .++.++|||||+|.+.++|..|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~-----------------~~~~~~g~afV~f~~~~~a~~A~~ 174 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS-----------------ATGLSKGYAFCEYVDINVTDQAIA 174 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT-----------------TTCSEEEEEEEEESSSSHHHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC-----------------CCCCcceEEEEEECCHHHHHHHHH
Confidence 456899999999999999999999999999999987653 23456799999999999999999
Q ss_pred HhcCceecceeeEEecCCCCc
Q 015974 302 AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~~ 322 (397)
.|||..|.|+.|.|.++.++.
T Consensus 175 ~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 175 GLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp HHTTCEETTEECEEEESCCCC
T ss_pred HcCCCEECCEEEEEEECCCCC
Confidence 599999999999999998643
No 179
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.46 E-value=1e-13 Score=141.87 Aligned_cols=81 Identities=19% Similarity=0.306 Sum_probs=72.8
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+.+|+++|..+|+.||.|..|.|+.+. .++.++|||||+|.+.++|..|| .
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~-----------------~tg~~kG~aFV~F~~~e~A~~Ai~~ 163 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSK-----------------RSGKPRGYAFIEYEHERDMHSAYKH 163 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccC-----------------CCCCccceEEEeeccHHHHHHHHHH
Confidence 36889999999999999999999999999999986653 24557799999999999999999 7
Q ss_pred hcCceecceeeEEecCCCC
Q 015974 303 FNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 303 lng~~l~Gr~I~V~~a~~~ 321 (397)
|||..|.|+.|.|.++.+.
T Consensus 164 lng~~i~gr~i~V~~a~~~ 182 (437)
T 3pgw_S 164 ADGKKIDGRRVLVDVERGR 182 (437)
T ss_pred cCCCEECCEEEEEEEeCCC
Confidence 9999999999999999753
No 180
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.44 E-value=3.1e-13 Score=112.77 Aligned_cols=80 Identities=23% Similarity=0.289 Sum_probs=62.5
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+++|++||.|. +.++.+.. +. .+|.++|||||+|.+.++|..||
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~--~~------------~~g~~~G~aFV~f~~~~~a~~Ai~ 70 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAE--SK------------SYFPPKGYAFLLFQEESSVQALID 70 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSS--SC------------CCSCTTSEEEECCSSHHHHHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCC--CC------------CCCCcccEEEEEECCHHHHHHHHH
Confidence 4468899999999999999999999999998 76644321 10 12567899999999999999999
Q ss_pred HhcCceecceeeEEecCC
Q 015974 302 AFNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~ 319 (397)
.++ .++|+.|.+..+.
T Consensus 71 ~~~--~~~G~~~~~~~~~ 86 (114)
T 2dnl_A 71 ACL--EEDGKLYLCVSSP 86 (114)
T ss_dssp HSE--EETTEEEEEECCS
T ss_pred hhh--hcCCcEEEeccCC
Confidence 463 3677777766543
No 181
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.44 E-value=1.3e-13 Score=115.57 Aligned_cols=73 Identities=14% Similarity=0.169 Sum_probs=63.2
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+.+|+++|+++|+.||.|..|.|+.+ |||||+|.+.++|..|| .
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~------------------------g~afV~f~~~~~a~~Ai~~ 70 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD------------------------GTGVVEFVRKEDMTYAVRK 70 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT------------------------SEEEEEESSHHHHHHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC------------------------CEEEEEECCHHHHHHHHHH
Confidence 3578999999999999999999999999999988321 79999999999999999 5
Q ss_pred hcCceeccee-----eEEecCCC
Q 015974 303 FNMAVIGGNH-----IRLDRACP 320 (397)
Q Consensus 303 lng~~l~Gr~-----I~V~~a~~ 320 (397)
||+..|.|+. |.|..+.+
T Consensus 71 l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 71 LDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp HTTCBCCCTTSCCCBCEEEECC-
T ss_pred hCCCEECCcEeeeEEEEeccCCC
Confidence 9999999998 67766654
No 182
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.43 E-value=7.7e-13 Score=114.14 Aligned_cols=76 Identities=21% Similarity=0.214 Sum_probs=67.1
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcce-EEEEecCHHHHHHHH-H
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH-AYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~-AFV~F~s~e~A~~Al-~ 302 (397)
-..|||+||++.+|+++|+.+|++||.|.+|+|... ++|| |||+|.+.++|..|+ .
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~----------------------~~gfqAFVef~~~~~A~~Ai~~ 85 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----------------------NNQFQALLQYADPVSAQHAKLS 85 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE----------------------TTEEEEEEEESCHHHHHHHHHH
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC----------------------CCCcEEEEEECCHHHHHHHHHH
Confidence 456889999999999999999999999999988432 2367 999999999999999 6
Q ss_pred hcCceecc--eeeEEecCCCCc
Q 015974 303 FNMAVIGG--NHIRLDRACPPR 322 (397)
Q Consensus 303 lng~~l~G--r~I~V~~a~~~~ 322 (397)
|||..|.| +.|+|+++.+..
T Consensus 86 LnG~~i~g~~~~LrI~~ak~~~ 107 (130)
T 3zzy_A 86 LDGQNIYNACCTLRIDFSKLTS 107 (130)
T ss_dssp HTTCEEETTEEEEEEEECSCSS
T ss_pred cCCCeecCCCcEEEEEecCCCc
Confidence 99999988 899999998653
No 183
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.43 E-value=4.4e-13 Score=116.81 Aligned_cols=79 Identities=20% Similarity=0.273 Sum_probs=69.6
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..|+++.+. .++.++|||||+|.+.++|..|+
T Consensus 87 ~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-----------------~~~~~~g~afV~f~~~~~A~~A~~ 149 (168)
T 1b7f_A 87 IKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDK-----------------LTGRPRGVAFVRYNKREEAQEAIS 149 (168)
T ss_dssp TTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECT-----------------TTCCEEEEEEEEESSHHHHHHHHH
T ss_pred CCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcC-----------------CCCCcceEEEEEECCHHHHHHHHH
Confidence 346889999999999999999999999999999987653 23456799999999999999999
Q ss_pred HhcCceecc--eeeEEecC
Q 015974 302 AFNMAVIGG--NHIRLDRA 318 (397)
Q Consensus 302 ~lng~~l~G--r~I~V~~a 318 (397)
.|||..|.| ++|.|.+|
T Consensus 150 ~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 150 ALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp HHTTCCCTTCSSCCEEEEC
T ss_pred HhcCCEecCCCeEEEEEeC
Confidence 599999988 99999875
No 184
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.43 E-value=2e-13 Score=117.54 Aligned_cols=77 Identities=18% Similarity=0.125 Sum_probs=65.9
Q ss_pred CEEEEecC----CCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecC----HHH-
Q 015974 226 RTIFVGNL----PLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS----EQS- 296 (397)
Q Consensus 226 rtVFVgNL----p~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s----~e~- 296 (397)
..|||+|| |+.+++.+|+++|+.||.|.+|.++.++ .+|.++|||||.|.+ ++.
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp-----------------~Tg~slGfgfVef~d~~g~~d~a 65 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDP-----------------NSALPLHVYLIKYASSDGKINDA 65 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECT-----------------TTCCEEEEEEEECC------CCH
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecC-----------------CCCceeeEEEEEECCCCCCcchH
Confidence 56999999 9999999999999999999999999987 355667999999996 333
Q ss_pred ---HHHHHH---hcCceecceeeEEecCC
Q 015974 297 ---TEAALA---FNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 297 ---A~~Al~---lng~~l~Gr~I~V~~a~ 319 (397)
|..|+. +||..|.|+.|+|..-.
T Consensus 66 ~kAA~kAi~~~~lng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 66 AKAAFSAVRKHESSGCFIMGFKFEVILNK 94 (136)
T ss_dssp HHHHHHHHHHTTTTCEEETTEEEEEEECC
T ss_pred HHHHHHHHHHhhhcCCeecCcEEEEEECc
Confidence 677764 79999999999999865
No 185
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.42 E-value=2.2e-13 Score=114.96 Aligned_cols=73 Identities=15% Similarity=0.259 Sum_probs=64.7
Q ss_pred ccCEEEE--ecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 224 LLRTIFV--GNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 224 ~~rtVFV--gNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
..++||| |||++.+|+++|+++|++||.|.+|.|+. ++|||||+|.+.++|..|+
T Consensus 24 pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~-----------------------~rgfaFV~f~~~~~A~~Ai 80 (114)
T 2cq2_A 24 ATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKRAY 80 (114)
T ss_dssp CCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT-----------------------TCSCEEEEESSHHHHHHHH
T ss_pred CCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHHHH
Confidence 4688999 77999999999999999999999887621 2489999999999999999
Q ss_pred -HhcCcee-----cceeeEEecCC
Q 015974 302 -AFNMAVI-----GGNHIRLDRAC 319 (397)
Q Consensus 302 -~lng~~l-----~Gr~I~V~~a~ 319 (397)
.|||..| .|++|.|.++.
T Consensus 81 ~~lnG~~~~~~lg~g~~l~v~~a~ 104 (114)
T 2cq2_A 81 VTLNGKEVVDDLGQKITLYLNFVE 104 (114)
T ss_dssp HHTTTCEEECTTSCEEECEEEEES
T ss_pred HHhCCCEEccccCCCcEEEEEecc
Confidence 6999988 68899998875
No 186
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.42 E-value=4.2e-13 Score=117.55 Aligned_cols=77 Identities=22% Similarity=0.362 Sum_probs=68.0
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+.+|+++|+++|+.||.|..|+++.++ +|.++|||||.|.+.++|..|+ .
T Consensus 94 ~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~------------------~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 94 EDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP------------------DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp GGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT------------------TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC------------------CCCEEEEEEEEECCHHHHHHHHHH
Confidence 46789999999999999999999999999999997653 2446799999999999999999 6
Q ss_pred hcCceec---ceeeEEecC
Q 015974 303 FNMAVIG---GNHIRLDRA 318 (397)
Q Consensus 303 lng~~l~---Gr~I~V~~a 318 (397)
|||..+. |++|.|.++
T Consensus 156 l~g~~~~~g~~~~l~V~~a 174 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFA 174 (175)
T ss_dssp HTTSCCCTTCSSCCEEEEC
T ss_pred hcCCcccCCCCCCeEEEec
Confidence 9998775 499999987
No 187
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.42 E-value=5.6e-13 Score=119.30 Aligned_cols=77 Identities=21% Similarity=0.220 Sum_probs=67.7
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
..+|||+|||+.+|+++|+.+|++||.|.+|+|... .++|||||+|.+.++|..|+ .|
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k---------------------~~rgfAFVeF~d~~~A~~Ai~~L 104 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK---------------------NNQFQALLQYADPVSAQHAKLSL 104 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES---------------------SSCEEEEEEESCHHHHHHHHHHS
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---------------------CCCCEEEEEECCHHHHHHHHHHh
Confidence 467999999999999999999999999999988431 13589999999999999999 69
Q ss_pred cCceecc--eeeEEecCCCCc
Q 015974 304 NMAVIGG--NHIRLDRACPPR 322 (397)
Q Consensus 304 ng~~l~G--r~I~V~~a~~~~ 322 (397)
||..|.| +.|+|.++.+..
T Consensus 105 nG~~i~g~g~~L~V~~Ak~~~ 125 (164)
T 1sjr_A 105 DGQNIYNACCTLRIDFSKLTS 125 (164)
T ss_dssp TTBCSSSSCSCEEEEECSSSS
T ss_pred CCCEecCCCcEEEEEEecCCc
Confidence 9999965 999999998653
No 188
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.41 E-value=8.6e-13 Score=112.95 Aligned_cols=74 Identities=20% Similarity=0.185 Sum_probs=64.7
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcce-EEEEecCHHHHHHHH-Hh
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVH-AYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~-AFV~F~s~e~A~~Al-~l 303 (397)
..|||+|||+.+|+++|+.+|+.||.|.+|+|... .|| |||+|.+.++|..|+ .|
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-----------------------~Gf~aFVef~~~~~A~~A~~~L 82 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-----------------------NGIQAMVEFESVLCAQKAKAAL 82 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-----------------------SSEEEEEEESSHHHHHHHHHHH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-----------------------CCCEEEEEECCHHHHHHHHHHh
Confidence 34789999999999999999999999999988320 176 999999999999999 69
Q ss_pred cCceecc--eeeEEecCCCCc
Q 015974 304 NMAVIGG--NHIRLDRACPPR 322 (397)
Q Consensus 304 ng~~l~G--r~I~V~~a~~~~ 322 (397)
||..|.| +.|+|.++.+..
T Consensus 83 nG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 83 NGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp TTCCCBTTBSEEEEECCSCSC
T ss_pred CCCEecCCCeEEEEEEecCCc
Confidence 9999987 689999997653
No 189
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.41 E-value=6.5e-13 Score=115.27 Aligned_cols=78 Identities=23% Similarity=0.301 Sum_probs=67.9
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-H
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-A 302 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ 302 (397)
..++|||+|||+.+|+++|+.+|+.||.|..|+++.+. .+|.++|||||+|.+.++|..|+ .
T Consensus 87 ~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~-----------------~~g~~~g~afV~f~~~~~A~~A~~~ 149 (167)
T 1fxl_A 87 RDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQ-----------------VTGVSRGVGFIRFDKRIEAEEAIKG 149 (167)
T ss_dssp TTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-----------------TTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecC-----------------CCCCccceEEEEeCCHHHHHHHHHH
Confidence 35789999999999999999999999999999986653 23456799999999999999999 5
Q ss_pred hcCceeccee--eEEecC
Q 015974 303 FNMAVIGGNH--IRLDRA 318 (397)
Q Consensus 303 lng~~l~Gr~--I~V~~a 318 (397)
|||..+.|+. |.|.+|
T Consensus 150 l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 150 LNGQKPSGATEPITVKFA 167 (167)
T ss_dssp HTTCCCTTCSSCCEEEEC
T ss_pred hcCCccCCCccceEEEeC
Confidence 9999999975 777764
No 190
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.39 E-value=1.8e-12 Score=107.47 Aligned_cols=82 Identities=16% Similarity=0.210 Sum_probs=68.8
Q ss_pred CccCEEEEecCCC-----CCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHH
Q 015974 223 KLLRTIFVGNLPL-----KVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (397)
Q Consensus 223 ~~~rtVFVgNLp~-----~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A 297 (397)
..+++|+|+||.. +.++++|+++|++||.|.+|.|++++. .++.++|||||.|.+.++|
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~----------------~~~~~~G~~FV~f~~~~~A 69 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPG----------------APDDEAVRIFLEFERVESA 69 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSS----------------CCTTTSEEEEEEESSHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCC----------------CCCCCcEEEEEEECCHHHH
Confidence 3578999999963 247899999999999999999976531 1134679999999999999
Q ss_pred HHHH-HhcCceecceeeEEecCCC
Q 015974 298 EAAL-AFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 298 ~~Al-~lng~~l~Gr~I~V~~a~~ 320 (397)
..|+ .|||..|.||.|.|.++..
T Consensus 70 ~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 70 IKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHHHCCCEECCcEEEEEEcCH
Confidence 9999 6999999999999999863
No 191
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=6.7e-13 Score=108.21 Aligned_cols=71 Identities=24% Similarity=0.231 Sum_probs=62.4
Q ss_pred ccCE-EEEecCCCCCcHHH----HHHHhccc-CCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHH
Q 015974 224 LLRT-IFVGNLPLKVKKKT----LIKEFIKF-GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (397)
Q Consensus 224 ~~rt-VFVgNLp~~~Tee~----L~~~Fs~~-G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A 297 (397)
+..| |||+|||+.+++++ |+++|+.| |.|.+|. + |+|||.|.+.++|
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt------------------------g---G~AfV~F~~~esA 59 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT------------------------G---CSAILRFINQDSA 59 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC------------------------T---TCEEEEESSHHHH
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe------------------------c---CEEEEEECCHHHH
Confidence 3555 99999999999987 56899999 5998761 1 8999999999999
Q ss_pred HHHH-HhcCceecceeeEEecCCCC
Q 015974 298 EAAL-AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 298 ~~Al-~lng~~l~Gr~I~V~~a~~~ 321 (397)
..|+ .|+|..|.||+|+|.++...
T Consensus 60 ~~A~~~l~G~~l~gr~i~v~~A~~~ 84 (96)
T 2diu_A 60 ERAQKRMENEDVFGNRIIVSFTPKN 84 (96)
T ss_dssp HHHHHHHTTCCSSSSCCEEESSCCS
T ss_pred HHHHHHhcCCccCCceEEEEecCCC
Confidence 9999 69999999999999999754
No 192
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.39 E-value=7.9e-13 Score=112.12 Aligned_cols=74 Identities=16% Similarity=0.272 Sum_probs=66.5
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|| .+|+++|+.+|+.||.|.+|.|. .++|||||+|.+.++|..||
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~-----------------------~~kg~aFV~f~~~~~A~~Ai~ 91 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD-----------------------PPRNCAFVTYEKMESADQAVA 91 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE-----------------------TTTTEEEEECSSHHHHHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe-----------------------CCCCEEEEEECCHHHHHHHHH
Confidence 34689999996 69999999999999999999872 25689999999999999999
Q ss_pred HhcCceecceeeEEecCCCC
Q 015974 302 AFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~~ 321 (397)
.|||..|.|+.|.|.++.++
T Consensus 92 ~lng~~~~g~~l~V~~a~~~ 111 (121)
T 2bz2_A 92 ELNGTQVESVQLKVNIARKQ 111 (121)
T ss_dssp HHTTCBCSSCBCEEEECCSS
T ss_pred HhCCCEECCeEEEEEEeCCC
Confidence 69999999999999999764
No 193
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.37 E-value=1.1e-12 Score=115.64 Aligned_cols=76 Identities=29% Similarity=0.327 Sum_probs=66.5
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+.+|+.||.|..+ . .++.++|||||+|.+.++|.+|+
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~----~------------------~~~~~~g~afV~f~~~~~A~~A~~ 154 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELKEVFEDALEIRLV----S------------------QDGKSKGIAYIEFKSEADAEKNLE 154 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE----C------------------SSSSCCSEEEEECSSHHHHHHHHH
T ss_pred ccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe----c------------------CCCCCceEEEEEECCHHHHHHHHH
Confidence 346899999999999999999999999987644 1 23456799999999999999999
Q ss_pred HhcCceecceeeEEecCCC
Q 015974 302 AFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 302 ~lng~~l~Gr~I~V~~a~~ 320 (397)
.|||..|.|+.|.|.++.+
T Consensus 155 ~l~g~~~~g~~i~v~~a~~ 173 (175)
T 1fje_B 155 EKQGAEIDGRSVSLYYTGE 173 (175)
T ss_dssp HHTEEEETTEEEEEEECSS
T ss_pred HhCCCEECCeEEEEEecCC
Confidence 5999999999999999875
No 194
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.36 E-value=5.3e-13 Score=109.11 Aligned_cols=58 Identities=22% Similarity=0.383 Sum_probs=54.8
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++|||+|||+++|+++|+++|+.| |.|..|+|++|..+|.++|||||+|.+.++|.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~ 75 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSI----GEVESAKLIRDKVAGHSLGYGFVNYVTAKDAE 75 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECSSSCCEEEEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEeEeeecCCCCcccccEEEEECCHHHHH
Confidence 35789999999999999999999999 99999999999999999999999999998875
No 195
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.36 E-value=1.2e-12 Score=124.11 Aligned_cols=76 Identities=21% Similarity=0.333 Sum_probs=68.3
Q ss_pred CCccCEEEEecCCCCC---------cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEec
Q 015974 222 GKLLRTIFVGNLPLKV---------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~---------Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~ 292 (397)
....++|||||||..+ |+++|+.+|++||.|.+|+|+. ++|||||.|.
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~-----------------------~kG~AFV~F~ 187 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVE-----------------------SKNCGFVKFK 187 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEG-----------------------GGTEEEEEES
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEEC-----------------------CCCEEEEEeC
Confidence 3457999999999998 8999999999999999999842 3589999999
Q ss_pred CHHHHHHHH-HhcCcee------------cceeeEEecCCC
Q 015974 293 SEQSTEAAL-AFNMAVI------------GGNHIRLDRACP 320 (397)
Q Consensus 293 s~e~A~~Al-~lng~~l------------~Gr~I~V~~a~~ 320 (397)
+.++|+.|+ .|+|..| .|+.|.|.++..
T Consensus 188 ~~~~Ae~A~~am~g~~l~~~~~~e~~~~~~gr~L~V~wA~~ 228 (240)
T 3u1l_A 188 YQANAEFAKEAMSNQTLLLPSDKEWDDRREGTGLLVKWANE 228 (240)
T ss_dssp SHHHHHHHHHHHTTCCCCCTTSTTGGGGGGSCCCEEEECC-
T ss_pred CHHHHHHHHHHhCCCEEeccccccccccCCCCEEEEEEccC
Confidence 999999999 6999999 899999999974
No 196
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.34 E-value=1.4e-13 Score=110.64 Aligned_cols=57 Identities=19% Similarity=0.327 Sum_probs=53.9
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCC-CeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G-~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+++|||+|||+++|+++|+++|+.| | .|..|+|++|+.+|.++|||||+|.+.++|.
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~----G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~ 58 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSH----GVQAREVRLMRNKSSGQSRGFAFVEFSHLQDAT 58 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHH----TCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHh----CCEeEEEEEEecCCCCCcCceEEEEecCHHHHH
Confidence 3689999999999999999999999 8 7999999999999999999999999998875
No 197
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.32 E-value=1.2e-11 Score=102.76 Aligned_cols=80 Identities=16% Similarity=0.204 Sum_probs=66.8
Q ss_pred CCccCEEEEecCCCCC-----------cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEE
Q 015974 222 GKLLRTIFVGNLPLKV-----------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIV 290 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~-----------Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~ 290 (397)
...+++|+|.||.... ++++|+.+|++||.|.+|.| .+. .++|||||+
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~--------------------~~~G~afV~ 70 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDR--------------------HPDGVASVS 70 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETT--------------------CTTCEEEEE
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecC--------------------CCCEEEEEE
Confidence 4558999999994433 26899999999999999965 221 146999999
Q ss_pred ecCHHHHHHHH-HhcCceecceeeEEecCCCCc
Q 015974 291 FKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPR 322 (397)
Q Consensus 291 F~s~e~A~~Al-~lng~~l~Gr~I~V~~a~~~~ 322 (397)
|.+.++|..|+ .|||..|.|+.|.|.++.+..
T Consensus 71 f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 71 FRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred ECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 99999999999 699999999999999997643
No 198
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.31 E-value=4.7e-13 Score=109.04 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=53.1
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCC--CeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G--~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
-.+|||+|||+.+|+++|+++|++| | .|..|+|++|+.+|.++|||||+|.+.++|+
T Consensus 9 m~tlfV~nL~~~~tee~L~~~F~~~----G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~ 67 (95)
T 2lkz_A 9 MDTIILRNIAPHTVVDSIMTALSPY----ASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDAS 67 (95)
T ss_dssp CCEEEEESCCTTCCHHHHHHHSTTT----CCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHH
T ss_pred cCEEEEeCCCCcCCHHHHHHHHHhh----CCccEEEEEEEecCCCCCCceEeEEEECCHHHHH
Confidence 4799999999999999999999999 7 4779999999999999999999999998875
No 199
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.31 E-value=7.6e-13 Score=114.13 Aligned_cols=98 Identities=15% Similarity=0.192 Sum_probs=58.1
Q ss_pred ceEEEEecCHHHHHHHH-HhcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCC
Q 015974 285 VHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDL 363 (397)
Q Consensus 285 G~AFV~F~s~e~A~~Al-~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~ 363 (397)
-|+|++|.+...+..|+ .++|....|+. .+....+ .+...+.++|||+|||+.+++++|+++|+.|
T Consensus 5 ~~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~~~~---------~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~--- 71 (135)
T 2lea_A 5 HHHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSYGRP---------PPDVEGMTSLKVDNLTYRTSPDTLRRVFEKY--- 71 (135)
T ss_dssp -------------------------------CCSCCS---------CSSGGGCCCEEEECCCSSCHHHHHHHHHGGG---
T ss_pred ccccccccCCCchhhhhhhccCCCCCCCC-CCCcCCC---------CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc---
Confidence 37888888888888888 57776655543 1222222 2234557899999999999999999999999
Q ss_pred CCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 364 ESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 364 ~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
|.|..|+|+++..++.++|||||+|.+.++|.
T Consensus 72 -G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~ 103 (135)
T 2lea_A 72 -GRVGDVYIPRDRYTKESRGFAFVRFHDKRDAE 103 (135)
T ss_dssp -SCCSEEECCCCSSSSSCCSCCEEECSCHHHHH
T ss_pred -CCEEEEEEEecCCCCccceEEEEEECCHHHHH
Confidence 99999999999889999999999999998874
No 200
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.30 E-value=2.5e-12 Score=101.43 Aligned_cols=59 Identities=20% Similarity=0.439 Sum_probs=55.6
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|||+.+++++|+++|++| |.|..|+|++++.+|.++|||||+|.+.++|.
T Consensus 9 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 67 (87)
T 3s7r_A 9 EDAGKMFVGGLSWDTSKKDLKDYFTKF----GEVVDCTIKMDPNTGRSRGFGFILFKDAASVE 67 (87)
T ss_dssp SCTTEEEEECCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCEEEEEEEEESSTHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEeecCCCCccccEEEEEECCHHHHH
Confidence 456899999999999999999999999 99999999999999999999999999998874
No 201
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.30 E-value=1.9e-12 Score=108.02 Aligned_cols=58 Identities=26% Similarity=0.316 Sum_probs=55.2
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+.++|||+|||+.+++++|+++|++| |.|..|+|++|..||.++|||||+|.+.++|.
T Consensus 5 p~~~lfV~nL~~~~te~~L~~~F~~~----G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~ 62 (110)
T 3s8s_A 5 PLKEVTFARLNDNVRETFLKDMCRKY----GEVEEVEILLHPRTRKHLGLARVLFTSTRGAK 62 (110)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhc----CCeeEEEEEECCCCCceeeEEEEEECCHHHHH
Confidence 46899999999999999999999999 99999999999999999999999999998874
No 202
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.29 E-value=2.6e-12 Score=105.92 Aligned_cols=57 Identities=19% Similarity=0.351 Sum_probs=53.7
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++|||+|||+++|+++|+++|++| |.|..|+|+++.. |.++|||||+|.+.++|.
T Consensus 10 ~~~~lfV~~Lp~~~te~~L~~~F~~~----G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~ 66 (103)
T 1s79_A 10 KNRSVYIKGFPTDATLDDIKEWLEDK----GQVLNIQMRRTLH-KAFKGSIFVVFDSIESAK 66 (103)
T ss_dssp GGGCEEEECCCTTCCHHHHHHHHHTS----SCEEEEEEECCCT-TSCCCEEEEEESSHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHhhc----CCEEEEEEEECCC-CCCccEEEEEECCHHHHH
Confidence 45899999999999999999999999 9999999999987 999999999999998874
No 203
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.28 E-value=9e-12 Score=118.45 Aligned_cols=75 Identities=24% Similarity=0.262 Sum_probs=67.7
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
...++|||+|||+.+|+++|+++|+.||.|..|+|+.+ .+|||||+|.+.++|..|+
T Consensus 205 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~----------------------~~g~afV~f~~~~~A~~A~~ 262 (282)
T 3pgw_A 205 PPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG----------------------RHDIAFVEFDNEVQAGAARD 262 (282)
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC----------------------CCcEEEEEeCCHHHHHHHHH
Confidence 45689999999999999999999999999999988532 1389999999999999999
Q ss_pred HhcCceec-ceeeEEecCC
Q 015974 302 AFNMAVIG-GNHIRLDRAC 319 (397)
Q Consensus 302 ~lng~~l~-Gr~I~V~~a~ 319 (397)
.|||..|. |+.|.|.++.
T Consensus 263 ~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 263 ALQGFKITQNNAMKISFAK 281 (282)
T ss_pred HcCCcEeCCCCEEEEEEec
Confidence 59999999 9999999974
No 204
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.28 E-value=4.7e-12 Score=102.33 Aligned_cols=60 Identities=18% Similarity=0.382 Sum_probs=56.0
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||..+++++|+++|+.| |.|..|+|+++..++.++|||||+|.+.++|.
T Consensus 7 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 66 (99)
T 2dgs_A 7 GSKSNKIFVGGIPHNCGETELREYFKKF----GVVTEVVMIYDAEKQRPRGFGFITFEDEQSVD 66 (99)
T ss_dssp CSSCCEEEEESCCSSCCHHHHHHHHSSS----SCEEEEEECCCTTTCSCCSEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCCCceEEEEECCHHHHH
Confidence 3457899999999999999999999999 99999999999999999999999999998874
No 205
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.27 E-value=5.4e-12 Score=113.69 Aligned_cols=75 Identities=21% Similarity=0.273 Sum_probs=67.8
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccC-CeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G-~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
..++|||+|||+.+|+++|+++|+.|| .|..|+++.. ++|||||+|.+.++|..|+
T Consensus 119 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~----------------------~~g~afV~f~~~~~A~~A~~ 176 (198)
T 1qm9_A 119 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK----------------------DRKMALIQMGSVEEAVQALI 176 (198)
T ss_dssp CCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST----------------------TSSCEEEECSSHHHHHHHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC----------------------CCcEEEEEeCCHHHHHHHHH
Confidence 478999999999999999999999999 9999988321 2489999999999999999
Q ss_pred HhcCceec-ceeeEEecCCC
Q 015974 302 AFNMAVIG-GNHIRLDRACP 320 (397)
Q Consensus 302 ~lng~~l~-Gr~I~V~~a~~ 320 (397)
.|||..+. |+.|.|.++.+
T Consensus 177 ~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 177 DLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp HHTSSCCSSCCSCCEEEECC
T ss_pred HhcCCccCCCCeEEEEeecc
Confidence 59999999 99999999865
No 206
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.26 E-value=1e-12 Score=134.49 Aligned_cols=59 Identities=15% Similarity=0.348 Sum_probs=55.3
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|||+.||+++|..+|+.| |.|..|.|+.+..+|.++|||||+|.+.++|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~ 158 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVY----GPIKRIHMVYSKRSGKPRGYAFIEYEHERDMH 158 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEeeccCCCCCccceEEEeeccHHHHH
Confidence 456899999999999999999999999 99999999999989999999999999998874
No 207
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.26 E-value=1.3e-11 Score=114.60 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=67.8
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccC-CeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFG-EIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL- 301 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G-~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al- 301 (397)
..++|||+|||+.+|+++|+++|+.|| .|..|+++. .++|||||+|.+.++|..|+
T Consensus 150 ~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~----------------------~~~g~afV~f~~~~~A~~Ai~ 207 (229)
T 2adc_A 150 PSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQ----------------------KDRKMALIQMGSVEEAVQALI 207 (229)
T ss_dssp SCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECS----------------------SSTTCEEEEESSHHHHHHHHH
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEE----------------------CCCcEEEEEECCHHHHHHHHH
Confidence 468999999999999999999999999 999998832 13589999999999999999
Q ss_pred HhcCceec-ceeeEEecCCC
Q 015974 302 AFNMAVIG-GNHIRLDRACP 320 (397)
Q Consensus 302 ~lng~~l~-Gr~I~V~~a~~ 320 (397)
.|||..+. |+.|.|.++.+
T Consensus 208 ~l~g~~~~~g~~l~v~~a~~ 227 (229)
T 2adc_A 208 DLHNHDLGENHHLRVSFSKS 227 (229)
T ss_dssp HHTTCBSSSSCBCEEEECSS
T ss_pred HHCCCccCCCCeEEEEEecC
Confidence 59999999 99999999875
No 208
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=6.6e-12 Score=102.19 Aligned_cols=61 Identities=26% Similarity=0.383 Sum_probs=56.8
Q ss_pred ccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 332 ~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...+.++|||+|||+.+++++|+++|+.| |.|..|.|+++..++.++|||||+|.+.++|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 69 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKY----GRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQ 69 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCBCSSSCSBCSCEEEEESSSSHHH
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCCCCeEEEEEECCHHHHH
Confidence 34567899999999999999999999999 99999999999999999999999999998875
No 209
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.25 E-value=4.8e-12 Score=112.25 Aligned_cols=104 Identities=13% Similarity=0.199 Sum_probs=55.8
Q ss_pred EEecCHHHHHHHH-HhcCceec--ceeeEEecCCCCcccc-----------CCCCCCccccccceecCCCCccCcHHHHH
Q 015974 289 IVFKSEQSTEAAL-AFNMAVIG--GNHIRLDRACPPRKKL-----------KGEDAPLYDIKKTVFVGNLPFDVKDEEIY 354 (397)
Q Consensus 289 V~F~s~e~A~~Al-~lng~~l~--Gr~I~V~~a~~~~k~~-----------~~~~~~~~~~~~tLfVgNLp~~vteedL~ 354 (397)
.+|...+++..|+ .+++.... |+.+.+.+........ .........+.++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7888999998888 57776554 6666655532211000 00111223456789999999999999999
Q ss_pred HHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 355 QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 355 ~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+|+.| |.|..|.|+++..+|.++|||||+|.+.++|.
T Consensus 91 ~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 128 (165)
T 1rk8_A 91 EKFCDY----GEIKNIHLNLDRRTGFSKGYALVEYETHKQAL 128 (165)
T ss_dssp HHHGGG----SCEEEEEEEECTTTSSEEEEEEEEESSHHHHH
T ss_pred HHhhcC----CCEEEEEEEecCCCCcEeeEEEEEECCHHHHH
Confidence 999999 99999999999999999999999999988774
No 210
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=1e-11 Score=101.43 Aligned_cols=60 Identities=20% Similarity=0.341 Sum_probs=56.2
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||+.+++++|+++|..| |.|..|+|+++..++.++|||||+|.+.++|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 72 (105)
T 2dh8_A 13 ADEIGKLFVGGLDWSTTQETLRSYFSQY----GEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVG 72 (105)
T ss_dssp SSSSSEECCBSCCTTCCHHHHHHHHHTT----SCEEEEEEEECSSSCCEEEEEEEEESSTTHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeCCCCCCcceEEEEEECCHHHHH
Confidence 4457899999999999999999999999 99999999999999999999999999998874
No 211
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.25 E-value=4.3e-12 Score=99.61 Aligned_cols=58 Identities=14% Similarity=0.206 Sum_probs=54.9
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+.++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~ 61 (85)
T 1x4e_A 4 GSSGLYIRGLQPGTTDQDLVKLCQPY----GKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQ 61 (85)
T ss_dssp CCCEEEEESCCTTCCHHHHHTTSTTT----SCEEEEEEECCSSSCSCCSEEEEEESCHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 46899999999999999999999999 99999999999989999999999999998874
No 212
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.25 E-value=5.7e-12 Score=99.05 Aligned_cols=58 Identities=22% Similarity=0.333 Sum_probs=54.4
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+.++|||+|||..+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 62 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPF----GRISDARVVKDMATGKSKGYGFVSFFNKWDAE 62 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCCccceEEEEEECCHHHHH
Confidence 46899999999999999999999999 99999999999889999999999999998874
No 213
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.25 E-value=5.9e-12 Score=98.10 Aligned_cols=56 Identities=25% Similarity=0.405 Sum_probs=53.5
Q ss_pred cceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 337 ~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|.
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~ 57 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDF----PSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQ 57 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTS----TTEEEEEEEECTTTCCEEEEEEEEESCHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEcCCCCCccceEEEEECCHHHHH
Confidence 689999999999999999999999 99999999999999999999999999998874
No 214
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.24 E-value=4.5e-12 Score=99.23 Aligned_cols=59 Identities=19% Similarity=0.370 Sum_probs=55.4
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|||+.+++++|+++|+.| |.|..|.|+++..++.++|||||+|.+.++|.
T Consensus 5 ~~~~~l~V~nl~~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 63 (85)
T 3mdf_A 5 TTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAA 63 (85)
T ss_dssp CCSSEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCEETTTTEECSEEEEEESSHHHHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhcc----CCEEEEEEEECCCCCccccEEEEEECCHHHHH
Confidence 456899999999999999999999999 99999999999889999999999999998874
No 215
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.24 E-value=2.5e-12 Score=102.52 Aligned_cols=56 Identities=18% Similarity=0.294 Sum_probs=50.9
Q ss_pred cceecCCCCccCcHHHHHHHhccCCCCCC--CeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 337 ~tLfVgNLp~~vteedL~~~F~~f~~~~G--~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+|||+|||+.+++++|+++|+.| | .|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~----G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~ 59 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSL----GVNDILEIKFFENRANGQSKGFALVGVGSEASSK 59 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTT----TCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHH
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHh----CCCceEEEEEEecCCCCccCcEEEEEECCHHHHH
Confidence 589999999999999999999999 8 8999999999999999999999999998874
No 216
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.24 E-value=8.7e-12 Score=101.48 Aligned_cols=60 Identities=18% Similarity=0.361 Sum_probs=55.9
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|..| |.|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 71 (103)
T 2cqg_A 12 VQKTSDLIVLGLPWKTTEQDLKEYFSTF----GEVLMVQVKKDLKTGHSKGFGFVRFTEYETQV 71 (103)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEEECSSSCSEEEEEEEEESSHHHHH
T ss_pred cCCCCEEEEEcCCCcCCHHHHHHHHHhc----CCeEEEEEEecCCCCCccceEEEEECCHHHHH
Confidence 3456899999999999999999999999 99999999999989999999999999998874
No 217
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.24 E-value=7e-12 Score=101.17 Aligned_cols=60 Identities=17% Similarity=0.299 Sum_probs=55.8
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeE-EEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE-AVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~-~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|. .|+|+++..++.++|||||+|.+.++|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 66 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATM----GETVMSVKIIRNRLTGIPAGYCFVEFADLATAE 66 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHT----TCCCCEEEEEECSSSCCEEEEEEEECSCHHHHH
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHh----CCcceEEEEeecCCCCCcCCEEEEEeCCHHHHH
Confidence 3457899999999999999999999999 9999 9999999989999999999999998874
No 218
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.24 E-value=6.5e-12 Score=103.32 Aligned_cols=60 Identities=32% Similarity=0.501 Sum_probs=56.0
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|..| |.|..|+|+++..++.++|||||+|.+.++|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 71 (111)
T 1x4h_A 12 VTEGKTVFIRNLSFDSEEEALGEVLQQF----GDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQ 71 (111)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSCCBCSEEEEEESSHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCCccEEEEEECCHHHHH
Confidence 3457899999999999999999999999 99999999999999999999999999998874
No 219
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.24 E-value=1.1e-11 Score=114.11 Aligned_cols=76 Identities=17% Similarity=0.170 Sum_probs=64.0
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCe--eEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEI--DSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I--~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
..++|||+|||+.+|+++|+++|+.||.| .+|+++.+. +.++|||||+|.+.++|..||
T Consensus 122 p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~-------------------~~~~g~gfV~f~~~~~A~~Ai 182 (205)
T 3tyt_A 122 PSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFSGK-------------------SERSSSGLLEWDSKSDALETL 182 (205)
T ss_dssp CCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECSCC-------------------SSSSEEEEEECSSHHHHHHHH
T ss_pred CcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEcCC-------------------CCCceEEEEEeCCHHHHHHHH
Confidence 36889999999999999999999999999 888884431 224589999999999999999
Q ss_pred -HhcCceecce----eeEEecC
Q 015974 302 -AFNMAVIGGN----HIRLDRA 318 (397)
Q Consensus 302 -~lng~~l~Gr----~I~V~~a 318 (397)
.|||..|.|+ ++.|.++
T Consensus 183 ~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 183 GFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp HHHTTCEECCSSSSSCEECEEE
T ss_pred HHhCCCCccCCCCCcceEEEec
Confidence 6999999876 4666554
No 220
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.23 E-value=3.9e-12 Score=97.73 Aligned_cols=56 Identities=21% Similarity=0.456 Sum_probs=53.1
Q ss_pred cceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 337 ~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
++|||+|||+.+++++|+++|++| |.|..|+|++++.+|.++|||||+|.+.++|.
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 56 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQF----GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 56 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTT----SCCCCEEEECCCCSSSCSSEEEECCCCTTHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEecCCCCCCcCceEEEEEcCHHHHH
Confidence 479999999999999999999999 99999999999989999999999999998874
No 221
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.23 E-value=2.5e-12 Score=104.85 Aligned_cols=57 Identities=16% Similarity=0.187 Sum_probs=54.3
Q ss_pred ccceecCCCCc------cCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPF------DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~------~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.++|||+|||+ .+++++|+++|++| |.|..|+|+++..||.++|||||+|.+.++|.
T Consensus 6 ~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~----G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~ 68 (100)
T 3ns6_A 6 DQYIVVNGAPVIPSAKVPVLKKALTSLFSKA----GKVVNMEFPIDEATGKTKGFLFVECGSMNDAK 68 (100)
T ss_dssp GGEEEEESCCCCBGGGHHHHHHHHHHHHHTT----SCEEEEECCEETTTTEECSEEEEEESSHHHHH
T ss_pred CcEEEEeCCCcCChHHHHHHHHHHHHHHHhc----CCEeEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 57999999999 99999999999999 99999999999999999999999999988874
No 222
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.23 E-value=2.5e-11 Score=114.99 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=68.4
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
.++|||+|||+.+|+++|+.+|+.||.|..|.|+.+. +|.++|||||.|.+.++|..|| .|
T Consensus 96 ~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~------------------~g~~~g~afV~f~~~~~A~~A~~~l 157 (261)
T 3sde_A 96 GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDD------------------RGRATGKGFVEFAAKPPARKALERC 157 (261)
T ss_dssp SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET------------------TSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCC------------------CCCcCcEEEEEeCCHHHHHHHHHHh
Confidence 5789999999999999999999999999999997652 3456799999999999999999 57
Q ss_pred -cCceec---ceeeEEecCCCC
Q 015974 304 -NMAVIG---GNHIRLDRACPP 321 (397)
Q Consensus 304 -ng~~l~---Gr~I~V~~a~~~ 321 (397)
++..+. |++|.|.++.+.
T Consensus 158 ~~~~~~~~~~~r~i~v~~~~~~ 179 (261)
T 3sde_A 158 GDGAFLLTTTPRPVIVEPMEQF 179 (261)
T ss_dssp HHSCEESSSSCCBCEEEECCCE
T ss_pred cCCeEEecCCCceEEEeecccc
Confidence 555555 999999998754
No 223
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.23 E-value=1.1e-11 Score=98.95 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=56.2
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+++..++.++|||||+|.+.++|.
T Consensus 12 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 71 (95)
T 2cqc_A 12 PDPNCCLGVFGLSLYTTERDLREVFSKY----GPIADVSIVYDQQSRRSRGFAFVYFENVDDAK 71 (95)
T ss_dssp CCGGGCEEEESCCSSCCHHHHHHHHHTT----SCEEEEEEEECSSSSSEEEEEEEEESSHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeeEEEEEEcCCCCCcccEEEEEECCHHHHH
Confidence 4567899999999999999999999999 99999999999999999999999999998874
No 224
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.23 E-value=6.6e-12 Score=101.04 Aligned_cols=57 Identities=23% Similarity=0.552 Sum_probs=54.3
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+++|||+|||..+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 58 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNV----GPVINLKMMFDPQTGRSKGYAFIEFRDLESSA 58 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTCCBCSEEEEEESSHHHHH
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCccceEEEEEECCHHHHH
Confidence 5799999999999999999999999 99999999999989999999999999998874
No 225
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.23 E-value=6.6e-12 Score=104.04 Aligned_cols=60 Identities=20% Similarity=0.390 Sum_probs=53.8
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 22 ~~~~~~lfV~nLp~~~te~~L~~~F~~~----G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~ 81 (109)
T 2rs2_A 22 GSSGCKMFIGGLSWQTTQEGLREYFGQF----GEVKECLVMRDPLTKRSRGFGFVTFMDQAGVD 81 (109)
T ss_dssp ----CCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEECCCTTTCCCTTCEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcc----CCeEEEEEEECCCCCCcCcEEEEEECCHHHHH
Confidence 3456899999999999999999999999 99999999999999999999999999998874
No 226
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.23 E-value=9.3e-12 Score=98.22 Aligned_cols=57 Identities=26% Similarity=0.496 Sum_probs=54.2
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.++|||+|||+.+++++|+++|+.| |.|..|+|+++..++.++|||||+|.+.++|.
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 62 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGC----GSVNRVTILCDKFSGHPKGFAYIEFSDKESVR 62 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGG----CCEEEEEEEESCSSSSCCEEEEEEESSTHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEecCCCCCcceEEEEEECCHHHHH
Confidence 5799999999999999999999999 99999999999989999999999999998874
No 227
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.23 E-value=1e-11 Score=99.32 Aligned_cols=58 Identities=14% Similarity=0.396 Sum_probs=54.9
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+.++|||+|||..+++++|+++|+.| |.|..|.|+++..++.++|||||+|.+.++|.
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 61 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPF----GKIDNIVLMKDSDTGRSKGYGFITFSDSECAR 61 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEECCSSSCCCCSEEEEEESCHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEeecCCCCceeeEEEEEECCHHHHH
Confidence 46899999999999999999999999 99999999999999999999999999998874
No 228
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.22 E-value=9.5e-12 Score=100.41 Aligned_cols=59 Identities=20% Similarity=0.361 Sum_probs=55.3
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|||+.+++++|+++|+.| |.|..|+|+++..++.++|||||+|.+.++|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 64 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAY----GPLSELHYPIDSLTKKPKGFAFVTFMFPEHAV 64 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCCCTTTCCCCSEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEEecCCCCCcCeEEEEEECCHHHHH
Confidence 356899999999999999999999999 99999999999889999999999999998874
No 229
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.2e-11 Score=100.60 Aligned_cols=59 Identities=27% Similarity=0.416 Sum_probs=54.8
Q ss_pred cccccceecCCCCccCcHHHHHHHhcc-CCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCG-LNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~-f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+. | |.|..|+|+++. +|.++|||||+|.+.++|.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~----G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~ 65 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVY----PSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQK 65 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHC----TTEEEEEEEECT-TCCEEEEEEEEESCHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhC----CCeEEEEEEECC-CCCccceEEEEECCHHHHH
Confidence 345689999999999999999999999 9 999999999998 8999999999999998874
No 230
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=1.3e-11 Score=98.58 Aligned_cols=60 Identities=32% Similarity=0.646 Sum_probs=56.0
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+++..++.++|||||+|.+.++|.
T Consensus 13 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 72 (94)
T 2e5h_A 13 APSKSTVYVSNLPFSLTNNDLYRIFSKY----GKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQ 72 (94)
T ss_dssp CCCTTSEEEESCCTTSCHHHHHHHTTTT----SCEEEEEECCCSSSCCCTTCEEEEESCHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHH
Confidence 4457899999999999999999999999 99999999999999999999999999998874
No 231
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.22 E-value=6.1e-12 Score=103.99 Aligned_cols=71 Identities=18% Similarity=0.332 Sum_probs=59.9
Q ss_pred EecCCCCCcHHHHHHHh------------cccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHH
Q 015974 230 VGNLPLKVKKKTLIKEF------------IKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (397)
Q Consensus 230 VgNLp~~~Tee~L~~~F------------s~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A 297 (397)
+.|||+.+|+++|+++| ++||.|.+|.|+++. .+.++|||||.|.+.++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~------------------~~~~~G~~fV~f~~~~~A 81 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL------------------GDHLVGNVYVKFRREEDA 81 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSS------------------SSSSEEEEEEEESCHHHH
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCC------------------CCCccEEEEEEECCHHHH
Confidence 56777888888877776 999999999996532 134679999999999999
Q ss_pred HHHH-HhcCceecceeeEEecC
Q 015974 298 EAAL-AFNMAVIGGNHIRLDRA 318 (397)
Q Consensus 298 ~~Al-~lng~~l~Gr~I~V~~a 318 (397)
.+|+ .|||..|.||.|.|.++
T Consensus 82 ~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 82 EKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp HHHHHHHTTCEETTEECCEEEC
T ss_pred HHHHHHHCCCEECCEEEEEEEc
Confidence 9999 69999999999999875
No 232
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.21 E-value=3.4e-11 Score=99.70 Aligned_cols=82 Identities=13% Similarity=0.137 Sum_probs=67.3
Q ss_pred CccCEEEEecC--CCCC--------cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEec
Q 015974 223 KLLRTIFVGNL--PLKV--------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (397)
Q Consensus 223 ~~~rtVFVgNL--p~~~--------Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~ 292 (397)
.+++.|.|.|| |..+ .+++|+++|++||.|.+|.|+++.. + ..+.++|||||.|.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~--~-------------~~~~~~G~~fV~f~ 67 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVD--G-------------VEVPGCGKIFVEFT 67 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBT--T-------------BCCTTTTEEEEEES
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCC--C-------------CCcCCcEEEEEEEC
Confidence 35789999998 3333 3479999999999999999866531 1 11246799999999
Q ss_pred CHHHHHHHH-HhcCceecceeeEEecCC
Q 015974 293 SEQSTEAAL-AFNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 293 s~e~A~~Al-~lng~~l~Gr~I~V~~a~ 319 (397)
+.++|.+|+ .|||..|.||.|.|.++.
T Consensus 68 ~~~~A~~Ai~~lnG~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 68 SVFDCQKAMQGLTGRKFANRVVVTKYCD 95 (105)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CHHHHHHHHHHhCCCEeCCCEEEEEEeC
Confidence 999999999 799999999999999875
No 233
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=1.4e-11 Score=102.25 Aligned_cols=59 Identities=29% Similarity=0.424 Sum_probs=55.5
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 81 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAV----GKVRDVRIISDRNSRRSKGIAYVEFCEIQSVP 81 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEECCSCCSSSCCCCEEEEESCGGGHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEeEEEEEecCCCCccCcEEEEEeCcHHHHH
Confidence 346899999999999999999999999 99999999999999999999999999998875
No 234
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.21 E-value=4.5e-12 Score=97.00 Aligned_cols=55 Identities=25% Similarity=0.500 Sum_probs=52.4
Q ss_pred ceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 338 tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+|||+|||+.+++++|+++|+.| |.|..|.|+++..+|.++|||||+|.+.++|.
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 55 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGF----GEVESIELPMDNKTNKRRGFCFITFKEEEPVK 55 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHH----SCCSEECCCCSCCCSSSCCCEEEECSSSHHHH
T ss_pred CEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCcCCEEEEEECCHHHHH
Confidence 58999999999999999999999 99999999999999999999999999998874
No 235
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.21 E-value=1.2e-11 Score=100.02 Aligned_cols=60 Identities=20% Similarity=0.188 Sum_probs=55.8
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEE--------EEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA--------VRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~--------Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|.. |+|+++..+|.++|||||+|.+.++|.
T Consensus 10 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~ 77 (99)
T 2la6_A 10 HSDNNTIFVQGLGENVTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAK 77 (99)
T ss_dssp CCCCSEEEEECCCSSCCHHHHHHHHTTT----SCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHH
Confidence 4457899999999999999999999999 99999 999999999999999999999998874
No 236
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=9.6e-12 Score=100.91 Aligned_cols=60 Identities=23% Similarity=0.474 Sum_probs=56.1
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++..++.++|||||+|.+.++|.
T Consensus 9 ~~~~~~l~v~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 68 (102)
T 1x5s_A 9 ASDEGKLFVGGLSFDTNEQSLEQVFSKY----GQISEVVVVKDRETQRSRGFGFVTFENIDDAK 68 (102)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHHHH----SCCCEEEECCCSSSCSCCSEEEEECSSHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEEEEEeCCCCCCcccEEEEEECCHHHHH
Confidence 4567899999999999999999999999 99999999999989999999999999998874
No 237
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.2e-11 Score=101.43 Aligned_cols=59 Identities=27% Similarity=0.330 Sum_probs=53.8
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEE-EEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA-VRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~-Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||+.+++++|+++|..| |.|.. |+|+++ .+|.++|||||+|.+.++|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~ 71 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGL----EIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAE 71 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTC----CEEEEEEECCBC-SSSCBCSEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCcceeEEEEEC-CCCCcceEEEEEECCHHHHH
Confidence 3456899999999999999999999999 89987 999999 78999999999999998874
No 238
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.20 E-value=8.4e-12 Score=101.96 Aligned_cols=60 Identities=17% Similarity=0.414 Sum_probs=55.8
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||..+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 10 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 69 (106)
T 2dgp_A 10 DHDAIKLFIGQIPRNLDEKDLKPLFEEF----GKIYELTVLKDRFTGMHKGCAFLTYCERESAL 69 (106)
T ss_dssp CTTCEEEEEESCCTTCCHHHHHHHHHHH----SCCCEEECCCCSSSCSCCSEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEecCCCCCcceEEEEEECCHHHHH
Confidence 3456899999999999999999999999 99999999999999999999999999988874
No 239
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.20 E-value=4.3e-12 Score=110.54 Aligned_cols=99 Identities=17% Similarity=0.195 Sum_probs=51.8
Q ss_pred ceEEEEecCHHHHHHHHHhcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCC
Q 015974 285 VHAYIVFKSEQSTEAALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLE 364 (397)
Q Consensus 285 G~AFV~F~s~e~A~~Al~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~ 364 (397)
|+||..|..+..+..++..-...+.|...--..... .........++|||+|||+++|+++|+++|+.|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~gg~~~g~~~g~~-------~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~---- 70 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASMTGGQQMGRGSGDS-------EFTVQSTTGHCVHMRGLPYKATENDIYNFFSPL---- 70 (139)
T ss_dssp --------------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSC----
T ss_pred CcccccccCccccchhcccchhccCCCCCCCCCCCc-------ccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhc----
Confidence 688999988888766663222223333221111000 001123346899999999999999999999999
Q ss_pred CCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 365 SSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 365 G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
| |..|+|+++.. |.++|||||+|.+.++|.
T Consensus 71 G-i~~v~i~~d~~-g~srGfaFV~F~~~e~A~ 100 (139)
T 2hgn_A 71 N-PVRVHIEIGPD-GRVTGEADVEFATHEEAV 100 (139)
T ss_dssp C-CSEEECCCSSS-SCSSCCCEEECSHHHHHH
T ss_pred C-CeEEEEEECCC-CCCceEEEEEeCCHHHHH
Confidence 8 67999999976 999999999999988874
No 240
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.20 E-value=1.5e-11 Score=99.96 Aligned_cols=58 Identities=29% Similarity=0.467 Sum_probs=54.3
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++|||+|||+.+++++|+++|+.| |.|..|+|+++. +|.++|||||+|.+.++|.
T Consensus 7 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~ 64 (102)
T 2xs2_A 7 IMPNTVFVGGIDVRMDETEIRSFFARY----GSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQ 64 (102)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECT-TSCEEEEEEEEESSCCCHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEEECC-CCCccceEEEEECCHHHHH
Confidence 346899999999999999999999999 999999999998 8999999999999998875
No 241
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.20 E-value=1.7e-11 Score=99.82 Aligned_cols=59 Identities=34% Similarity=0.542 Sum_probs=54.9
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| | |..|+|+++..++.++|||||+|.+.++|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 70 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDL----S-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLK 70 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTS----C-EEEEEEEECSSSCSEEEEEEEEESSHHHHH
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhC----C-ceEEEEeecCCCCccceEEEEEECCHHHHH
Confidence 4457899999999999999999999999 7 999999999999999999999999998874
No 242
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.4e-11 Score=100.45 Aligned_cols=60 Identities=20% Similarity=0.301 Sum_probs=56.0
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++..++.++|||||+|.+.++|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 71 (105)
T 1x5u_A 12 RNQDATVYVGGLDEKVSEPLLWELFLQA----GPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 71 (105)
T ss_dssp CCTTTEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCBCSSSCSBCSCEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCcCCcEEEEEECCHHHHH
Confidence 4457899999999999999999999999 99999999999989999999999999998874
No 243
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=1.4e-11 Score=100.61 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=55.8
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||..+++++|+++|+.| |.|..|.|+++..+|.++|||||+|.+.++|.
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 79 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQ 79 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTSSEEEEEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcc----CCeEEEEEEecCCCCceeeEEEEEECCHHHHH
Confidence 3456899999999999999999999999 99999999999999999999999999998874
No 244
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.20 E-value=6.4e-12 Score=96.27 Aligned_cols=55 Identities=20% Similarity=0.391 Sum_probs=52.1
Q ss_pred ceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 338 TVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 338 tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|.
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 55 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQF----GKVDDAMLMFDKTTNRHRGFGFVTFESEDIVE 55 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTT----SCCSEECCCBCSSSTTSCBEEEEECSCHHHHH
T ss_pred CEEEecCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 58999999999999999999999 99999999999989999999999999988774
No 245
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.20 E-value=7.9e-12 Score=101.43 Aligned_cols=60 Identities=18% Similarity=0.351 Sum_probs=56.2
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++..++.++|||||+|.+.++|.
T Consensus 9 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 68 (102)
T 2cqb_A 9 ATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAA 68 (102)
T ss_dssp CCCCSCEEEESCCSSCCHHHHHHHHTTT----SCCCCEECCCCSSSCCCSSEEEECCSSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcc----CCEEEEEEEecCCCCCcceEEEEEECCHHHHH
Confidence 4567999999999999999999999999 99999999999999999999999999998874
No 246
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1.7e-11 Score=102.02 Aligned_cols=60 Identities=23% Similarity=0.430 Sum_probs=56.0
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++..++.++|||||+|.+.++|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 73 (116)
T 2cqd_A 14 DTTFTKIFVGGLPYHTTDASLRKYFEGF----GDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 73 (116)
T ss_dssp SCSSSEEEEECCCSSCCHHHHHHHHHTT----SCEEEEEESCCSSSCCCCSEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeeEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 3457899999999999999999999999 99999999999999999999999999998874
No 247
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1.3e-11 Score=100.48 Aligned_cols=60 Identities=23% Similarity=0.400 Sum_probs=56.0
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||..+++++|+++|+.| |.|..|.|+++..++.++|||||+|.+.++|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 71 (103)
T 2cq0_A 12 ADDNATIRVTNLSEDTRETDLQELFRPF----GSISRIYLAKDKTTGQSKGFAFISFHRREDAA 71 (103)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHTTSTTT----CCEEEEEEEECSSSCSEEEEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEeecCCCCceeeEEEEEECCHHHHH
Confidence 4457899999999999999999999999 99999999999989999999999999998874
No 248
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.19 E-value=2e-11 Score=101.24 Aligned_cols=60 Identities=23% Similarity=0.344 Sum_probs=55.9
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||+.+++++|+++|..| |.|..|+|+++..++.++|||||+|.+.++|+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 71 (115)
T 2dgo_A 12 TSNHFHVFVGDLSPEITTEDIKAAFAPF----GRISDARVVKDMATGKSKGYGFVSFFNKWDAE 71 (115)
T ss_dssp STTCEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 3457899999999999999999999999 99999999999889999999999999998874
No 249
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.19 E-value=1.9e-11 Score=99.86 Aligned_cols=60 Identities=23% Similarity=0.463 Sum_probs=55.6
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeC-CCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRH-PHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd-~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||+.+++++|+++|+.| |.|..|+|+++ ..++.++|||||+|.+.++|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~ 72 (107)
T 2cph_A 12 KQTTSKILVRNIPFQANQREIRELFSTF----GELKTVRLPKKMTGTGAHRGFGFVDFITKQDAK 72 (107)
T ss_dssp SSCCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCCCCSSSCSSCSEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHcc----CCeEEEEEecCCCCCCCcCceEEEEECCHHHHH
Confidence 4457899999999999999999999999 99999999999 778999999999999998874
No 250
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.19 E-value=2.2e-11 Score=99.29 Aligned_cols=58 Identities=26% Similarity=0.456 Sum_probs=54.1
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|||+.+++++|+++|+.| |.|..|+|+++. +|.++|||||+|.+.++|.
T Consensus 13 ~~~~~l~v~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~ 70 (105)
T 2dnh_A 13 GRDRKLFVGMLNKQQSEEDVLRLFQPF----GVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQ 70 (105)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECS-SSCEEEEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCcCcEEEEEeCCHHHHH
Confidence 457899999999999999999999999 999999999997 6999999999999998874
No 251
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=8.1e-12 Score=100.12 Aligned_cols=58 Identities=22% Similarity=0.468 Sum_probs=54.7
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEE-EEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAV-RVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~V-ri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+.++|||+|||+.+++++|+++|+.| |.|..| +|+++..++.++|||||+|.+.++|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~ 62 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAF----GVILQTPKIMRDPDTGNSKGYAFINFASFDASD 62 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTT----SCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHH
Confidence 46899999999999999999999999 999999 99999889999999999999998875
No 252
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.18 E-value=1.6e-11 Score=101.97 Aligned_cols=59 Identities=17% Similarity=0.327 Sum_probs=55.3
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++|||+|||+.+++++|+++|+.| |.|..|+|+++..++.++|||||+|.+.++|.
T Consensus 23 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 81 (115)
T 2cpz_A 23 PEGANLFIYHLPQEFGDQDLLQMFMPF----GNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQ 81 (115)
T ss_dssp STTCCEEEESCCSSCCHHHHHHHHGGG----SCCSEEEEEECSSSCSEEEEEEEECSSHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECCCCCCcCccEEEEECCHHHHH
Confidence 456899999999999999999999999 99999999999989999999999999998874
No 253
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.18 E-value=7.8e-12 Score=101.68 Aligned_cols=60 Identities=20% Similarity=0.495 Sum_probs=55.7
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~ 64 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLKDIFSEV----GPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 64 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHHHHHHTT----SCCSEEEEEEETTTTEEEEEEEEECSCHHHHH
T ss_pred CCCccEEEEeCCCCcCCHHHHHHHHHhc----CCeeEEEEEeCCCCCccceEEEEEECCHHHHH
Confidence 3456899999999999999999999999 99999999999889999999999999998874
No 254
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.18 E-value=3.3e-11 Score=100.43 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=55.9
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 37 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~ 96 (118)
T 2khc_A 37 GPEGCNLFIYHLPQEFTDTDLASTFLPF----GNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQ 96 (118)
T ss_dssp CCCSEEEEEECSCTTCCHHHHHHHTTTS----CEEEEEEECCCSSSSCCCCEEEEEEESSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEeCCCCCCcCcEEEEEECCHHHHH
Confidence 3456899999999999999999999999 99999999999989999999999999998874
No 255
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.18 E-value=3.4e-11 Score=97.43 Aligned_cols=58 Identities=24% Similarity=0.435 Sum_probs=54.2
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|||+.+++++|+++|..| |.|..|+|+++. +|.++|||||+|.+.++|.
T Consensus 15 ~~~~~l~v~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~ 72 (100)
T 2do4_A 15 LEKHKLFISGLPFSCTKEELEEICKAH----GTVKDLRLVTNR-AGKPKGLAYVEYENESQAS 72 (100)
T ss_dssp CCCSCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECT-TSCEEEEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhC----CCeEEEEEEECC-CCCEEeEEEEEECCHHHHH
Confidence 456899999999999999999999999 999999999997 8999999999999998874
No 256
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.18 E-value=1.3e-11 Score=103.12 Aligned_cols=55 Identities=20% Similarity=0.451 Sum_probs=50.7
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+|||+|||+.+++++|+++|+.| |.|..|+|+++. +.++|||||+|.+.++|+
T Consensus 5 ~~~lfV~nLp~~~te~~L~~~F~~~----G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~ 59 (115)
T 4f25_A 5 SGNIFIKNLDKSIDNKALYDTFSAF----GNILSCKVVCDE--NGSKGYGFVHFETQEAAE 59 (115)
T ss_dssp CCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEEET--TEEEEEEEEEESCHHHHH
T ss_pred CCEEEECCCCCCCCHHHHHHHHhcc----CCEEEEEEeecC--CCCCceEEEEECCHHHHH
Confidence 4689999999999999999999999 999999999985 458999999999998875
No 257
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.18 E-value=2.5e-11 Score=96.99 Aligned_cols=59 Identities=29% Similarity=0.482 Sum_probs=54.5
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++.. |.++|||||+|.+.++|.
T Consensus 13 ~~~~~~l~v~nlp~~~~~~~l~~~F~~~----G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~ 71 (95)
T 2ywk_A 13 EEADRTVFVGNLEARVREEILYELFLQA----GPLTKVTICKDRE-GKPKSFGFVCFKHPESVS 71 (95)
T ss_dssp TTGGGEEEEECCCTTCCHHHHHHHHGGG----SCEEEEEEEECTT-SCEEEEEEEEESSTHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEEECCC-CCCceEEEEEECCHHHHH
Confidence 3456899999999999999999999999 9999999999976 999999999999998874
No 258
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.17 E-value=9.9e-11 Score=99.13 Aligned_cols=83 Identities=17% Similarity=0.165 Sum_probs=68.0
Q ss_pred ccCEEEEecCCC--C---CcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHH
Q 015974 224 LLRTIFVGNLPL--K---VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (397)
Q Consensus 224 ~~rtVFVgNLp~--~---~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~ 298 (397)
++++|+|.||-. + -.+++|++.|++||.|.+|.|+++..... .++.++|||||.|.+.++|.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~-------------~~~~~~G~~FV~F~~~e~A~ 85 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEE-------------EDAEIIVKIFVEFSIASETH 85 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSS-------------TTCEEEEEEEEEESSHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcc-------------cCCcceEEEEEEECCHHHHH
Confidence 378999999942 2 24789999999999999999987652110 12346799999999999999
Q ss_pred HHH-HhcCceecceeeEEecCC
Q 015974 299 AAL-AFNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 299 ~Al-~lng~~l~Gr~I~V~~a~ 319 (397)
+|+ .|||..|.||.|.|.++.
T Consensus 86 ~Ai~~LnGr~f~GR~i~v~~~~ 107 (118)
T 3ue2_A 86 KAIQALNGRWFAGRKVVAEVYD 107 (118)
T ss_dssp HHHHHHTTCEETTEECEEEEEC
T ss_pred HHHHHHCCCEECCcEEEEEEcC
Confidence 999 699999999999999875
No 259
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.17 E-value=1.9e-11 Score=101.18 Aligned_cols=60 Identities=15% Similarity=0.371 Sum_probs=55.9
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 23 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~ 82 (108)
T 2jrs_A 23 SAGPMRLYVGSLHFNITEDMLRGIFEPF----GRIESIQLMMDSETGRSKGYGFITFSDSECAK 82 (108)
T ss_dssp CSSCEEEEEECCCSSCCHHHHHHHHTTT----SCEEEEEEEEETTTTEEEEEEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCccceEEEEEECCHHHHH
Confidence 4457899999999999999999999999 99999999999989999999999999998874
No 260
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.17 E-value=1.9e-11 Score=100.66 Aligned_cols=60 Identities=18% Similarity=0.318 Sum_probs=55.7
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||..+++++|+.+|+.| |.|..|.|+++..+|.++|||||+|.+.++|.
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 82 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDY----GEIKNIHLNLDRRTGFSKGYALVEYETHKQAL 82 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGG----SCEEEEECCBCTTTSSBCSEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcceEEEEEECCHHHHH
Confidence 3456899999999999999999999999 99999999999989999999999999998874
No 261
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.17 E-value=1.3e-11 Score=99.48 Aligned_cols=58 Identities=16% Similarity=0.385 Sum_probs=53.6
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCC---CCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPH---MRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~---tg~~kGfAFV~F~s~e~A~ 396 (397)
+.++|||+|||+.+++++|+++|+.| |.|..|+|+++.. ++.++|||||+|.+.++|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~ 64 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKV----GAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQ 64 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHH
Confidence 46899999999999999999999999 9999999999876 6689999999999998874
No 262
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2e-11 Score=99.61 Aligned_cols=58 Identities=40% Similarity=0.677 Sum_probs=54.3
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCC-CCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM-RVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~t-g~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|||+.+++++|+++|..| | |..|+|+++..+ |.++|||||+|.+.++|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~ 71 (104)
T 1wi8_A 13 SPPYTAFLGNLPYDVTEESIKEFFRGL----N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLL 71 (104)
T ss_dssp SSCEEEEEESCCSSCCHHHHHHHTTTS----C-EEEEECCBCSSCTTSBCSCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCcCCHHHHHHHHHHC----C-ceEEEEecCCCCCCCcCeEEEEEECCHHHHH
Confidence 456899999999999999999999999 9 999999999987 999999999999998874
No 263
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.17 E-value=1.2e-11 Score=107.37 Aligned_cols=58 Identities=17% Similarity=0.216 Sum_probs=53.5
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCC---eEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS---VEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~---I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++|||+|||+++|+++|+++|+.| |. |..|+|+++.. |+++|||||+|.+.++|.
T Consensus 42 ~~~~~lfVgnLp~~~te~dL~~~F~~~----G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~ 102 (136)
T 2hgl_A 42 GEGFVVKLRGLPWSCSVEDVQNFLSDC----TIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVK 102 (136)
T ss_dssp CTTCEEEEESCCTTCCHHHHHHHTTTC----CCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHH
Confidence 446899999999999999999999999 88 89999999987 999999999999998874
No 264
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.17 E-value=1.4e-11 Score=98.54 Aligned_cols=54 Identities=28% Similarity=0.378 Sum_probs=48.7
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+..+|||+|||+++|+++|+++|++| |.|..|+|+++ ++|||||+|.+.++|.
T Consensus 9 ~~~~~l~V~~Lp~~~te~~L~~~F~~~----G~i~~v~i~~~-----srGfaFV~F~~~~~A~ 62 (89)
T 3d2w_A 9 HHGSKVFVGRCTEDMTAEELQQFFCQY----GEVVDVFIPKP-----FRAFAFVTFADDKVAQ 62 (89)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHTTT----SCEEEEECCSS-----CCSEEEEEESCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEeeC-----CCCEEEEEECCHHHHH
Confidence 356899999999999999999999999 99999999885 7899999999998874
No 265
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.17 E-value=1.7e-11 Score=108.51 Aligned_cols=58 Identities=17% Similarity=0.307 Sum_probs=53.8
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCC--CeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G--~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++|||+|||+.+++++|+++|+.| | .|..|+|++|..+|.++|||||+|.+.++|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~----G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~ 113 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSI----GVYDVVELKFAENRANGQSKGYAEVVVASENSVH 113 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHT----TCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHH----CCccEEEEEEEecCCCCccceEEEEEECCHHHHH
Confidence 45799999999999999999999999 8 8999999999999999999999999998874
No 266
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.17 E-value=2.1e-11 Score=100.11 Aligned_cols=57 Identities=25% Similarity=0.405 Sum_probs=52.0
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++|||+|||+.+|+++|+++|..| |.| .|+|+++. +|.++|||||+|.+.++|.
T Consensus 13 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~ 69 (102)
T 1wez_A 13 TTGHCVHMRGLPYRATENDIYNFFSPL----NPM-RVHIEIGP-DGRVTGEADVEFATHEDAV 69 (102)
T ss_dssp SSSCEEEEESCCTTCCHHHHHHSSCSC----CCS-EEEEEESS-SSCEEEEEEEECSSSHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHc----Cce-EEEEEECC-CCCEeeEEEEEECCHHHHH
Confidence 446899999999999999999999999 844 99999997 7999999999999998875
No 267
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.17 E-value=1.1e-11 Score=105.93 Aligned_cols=59 Identities=19% Similarity=0.318 Sum_probs=54.1
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEE--EEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA--VRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~--Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||+.+++++|+++|..| |.|.. |+|++|..+|.++|||||+|.+. +|.
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~~~F~~~----G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~ 80 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSILGALAPY----AVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAA 80 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHHHHHGGG----CCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcceeeEEEEEcCCCCCcceEEEEEECCH-HHH
Confidence 3456899999999999999999999999 99977 99999999999999999999998 664
No 268
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.5e-11 Score=102.48 Aligned_cols=59 Identities=27% Similarity=0.407 Sum_probs=54.1
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCe-EEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSV-EAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I-~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.| ..|+|+++. +|.++|||||+|.+.++|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~ 71 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVLQFLEGI----PVDENAVHVLVDN-NGQGLGQALVQFKNEDDAR 71 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHHHHTTTS----CCCSTTEEECCCT-TSSCSSCEEEECSSHHHHH
T ss_pred CCCccEEEEeCcCCcCCHHHHHHHHHhC----CCcCCeEEEEECC-CCCcceEEEEEECCHHHHH
Confidence 3456899999999999999999999999 889 899999998 8999999999999998874
No 269
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.16 E-value=3.8e-11 Score=102.71 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=56.2
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 43 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~ 102 (129)
T 2kxn_B 43 PDPNCCLGVFGLSLYTTERDLREVFSKY----GPIADVSIVYDQQSRRSRGFAFVYFENVDDAK 102 (129)
T ss_dssp CCCSSCBCEETCTTSCCHHHHHHHHTTT----SCEEEEEEECCSSSSCCCCEEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHH
Confidence 4567899999999999999999999999 99999999999999999999999999998874
No 270
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.16 E-value=1.8e-11 Score=101.84 Aligned_cols=59 Identities=19% Similarity=0.445 Sum_probs=55.2
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++|||+|||+.+++++|+++|..| |.|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~ 83 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQW----GKLTDCVVMRDPASKRSRGFGFVTFSSMAEVD 83 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSS----CCCSEEEEECCTTTSSCCSEEEEECSSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECCCCCCcCceEEEEeCCHHHHH
Confidence 346899999999999999999999999 99999999999999999999999999988774
No 271
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.15 E-value=3.2e-11 Score=98.65 Aligned_cols=59 Identities=24% Similarity=0.363 Sum_probs=55.0
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+++. +|.++|||||+|.+.++|.
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~ 84 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVHYDR-SGRSLGTADVHFERKADAL 84 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEEECT-TSCEEEEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCcceEEEEEECCHHHHH
Confidence 4567899999999999999999999999 999999999998 8999999999999998874
No 272
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.15 E-value=1.5e-11 Score=104.98 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=52.2
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...+|||+|||+++|+++|+++|++|+.+.|.|..|+|+++ .+|+++|||||+|.+.++|.
T Consensus 22 ~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~ 82 (123)
T 2dha_A 22 NQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQ 82 (123)
T ss_dssp SCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHH
Confidence 45799999999999999999999999332233579999999 47999999999999988874
No 273
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.14 E-value=1.8e-11 Score=99.57 Aligned_cols=59 Identities=39% Similarity=0.660 Sum_probs=52.3
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCC-CCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHP-HMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~-~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||+.+++++|+++|+.| | |..|+|+++. .+|.++|||||+|.+.++|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~ 75 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGL----N-ISAVRLPREPSNPERLKGFGYAEFEDLDSLL 75 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSS----C-EEEEECSCCTTTTCCCCSCEEEEECCHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----C-CeEEEEEecCCcCCccCeEEEEEECCHHHHH
Confidence 4457899999999999999999999999 9 9999999998 58999999999999998874
No 274
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.14 E-value=4.8e-11 Score=97.05 Aligned_cols=58 Identities=19% Similarity=0.325 Sum_probs=53.6
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+++ ++.++|||||+|.+.++|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~ 69 (103)
T 2d9p_A 12 RYQVVNLYVKNLDDGIDDERLRKAFSPF----GTITSAKVMME--GGRSKGFGFVCFSSPEEAT 69 (103)
T ss_dssp CSSCCCEEEECCCTTCCHHHHHHTTTTT----SCEEEEEEEEC--SSSEEEEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcC--CCCcCEEEEEEECCHHHHH
Confidence 3457899999999999999999999999 99999999998 7999999999999998874
No 275
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=2.6e-11 Score=99.46 Aligned_cols=58 Identities=22% Similarity=0.304 Sum_probs=54.0
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCC-eEEEEEe-eCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS-VEAVRVI-RHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~-I~~Vri~-rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+.++|||+|||+.+++++|+++|..| |. |..|.|+ .+..+|.++|||||+|.+.++|.
T Consensus 7 ~~~~l~V~nLp~~~t~~~l~~~f~~~----G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~ 66 (109)
T 2dis_A 7 GNCRLFIGGIPKMKKREEILEEIAKV----TEGVLDVIVYASAADKMKNRGFAFVEYESHRAAA 66 (109)
T ss_dssp CSEEEEEECCCTTSCHHHHHHHHHHH----STTEEEEECCSSSCTTTTTCCEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHh----cCCceEEEEEccCCCCCCcCcEEEEEecCHHHHH
Confidence 46899999999999999999999999 88 9999998 88888999999999999998874
No 276
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.13 E-value=3.2e-11 Score=100.30 Aligned_cols=53 Identities=19% Similarity=0.312 Sum_probs=48.6
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|||+.+++++|+++|++| |.|..|+|+++ +|||||+|.+.++|.
T Consensus 14 ~~~~~LfV~nLp~~vte~dL~~lF~~f----G~V~~v~i~~~------kGfaFVeF~~~~~A~ 66 (105)
T 1sjq_A 14 VPSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKG------KNQAFIEMNTEEAAN 66 (105)
T ss_dssp CCCCEEEECSCCTTSCHHHHHHHHHHH----CCEEEEEEETT------TTEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcC------CCEEEEEECCHHHHH
Confidence 356899999999999999999999999 99999999875 789999999998874
No 277
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.13 E-value=6.1e-11 Score=94.19 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=52.9
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++ +|.++|||||+|.+.++|.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~ 62 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNEC----GHVLYADIKME--NGKSKGCGVVKFESPEVAE 62 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTT----SCEEEEEEEES--SSCEEEEEEEEESSHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEcc--CCCcceEEEEEECCHHHHH
Confidence 3456899999999999999999999999 99999999985 6899999999999998874
No 278
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.13 E-value=5.3e-11 Score=100.27 Aligned_cols=60 Identities=25% Similarity=0.339 Sum_probs=55.4
Q ss_pred ccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 332 ~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.....++|||+|||..+++++|+++|+.| |.|..|+|+++. +|.++|||||+|.+.++|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~ 90 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVDYDR-SGRSLGTADVHFERRADAL 90 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTT----SCCSEEEEECCS-SSSCCSEEEEEESSHHHHH
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEEECC-CCCEeeEEEEEECCHHHHH
Confidence 34567899999999999999999999999 999999999998 8999999999999998874
No 279
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.12 E-value=4.3e-11 Score=100.29 Aligned_cols=58 Identities=17% Similarity=0.370 Sum_probs=54.1
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+..++|||+|||..+++++|+++|+.| |.|..|.|+++. +|.++|||||+|.+.++|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~ 62 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKH----GPISEVLLIKDR-TSKSRGFAFITFENPADAK 62 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTS----SCCSEEEEECST-TTTCCCEEEEECSSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECC-CCCcccEEEEEECCHHHHH
Confidence 346899999999999999999999999 999999999997 8999999999999998874
No 280
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.12 E-value=3e-11 Score=94.20 Aligned_cols=54 Identities=13% Similarity=0.176 Sum_probs=49.4
Q ss_pred cceecCCCCccC------cHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 337 KTVFVGNLPFDV------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 337 ~tLfVgNLp~~v------teedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
++|||+|||+.+ ++++|+++|++| |.|..|+|++ .+|.++|||||+|.+.++|.
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~i~~v~i~~--~~g~~~g~afV~f~~~~~A~ 61 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYPE--EDGKTKGYIFLEYASPAHAV 61 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTT----CCEEEEECCC--BTTBCCCEEEEEESSHHHHH
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhc----CCeEEEEecC--CCCcEeEEEEEEECCHHHHH
Confidence 689999999999 789999999999 9999999883 57899999999999998874
No 281
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.12 E-value=7.9e-11 Score=97.48 Aligned_cols=58 Identities=14% Similarity=0.432 Sum_probs=54.2
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++|||+|||+.+++++|+++|..| |.|..|+|+++. ++.++|||||+|.+.++|.
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~ 80 (114)
T 1x5o_A 23 QDPTNLYISNLPLSMDEQELENMLKPF----GQVISTRILRDS-SGTSRGVGFARMESTEKCE 80 (114)
T ss_dssp CCTTEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEEECS-SSCEEEEEEEEESCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEECC-CCCcceEEEEEECCHHHHH
Confidence 456899999999999999999999999 999999999998 8999999999999998874
No 282
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.12 E-value=6.5e-11 Score=101.00 Aligned_cols=60 Identities=18% Similarity=0.351 Sum_probs=56.1
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|++++.+|.++|||||+|.+.++|.
T Consensus 60 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 119 (140)
T 2ku7_A 60 ATTKRVLYVGGLAEEVDDKVLHAAFIPF----GDITDIQIPLDYETEKHRGFAFVEFELAEDAA 119 (140)
T ss_dssp CSSCCEEEEECCCTTCCHHHHHHHHGGG----SCEEEEECCCCTTTCCCCSEEEEEESCHHHHH
T ss_pred CCCCcEEEEEeCCCCCCHHHHHHHHHhc----CCEEEEEEeecCCCCCcCcEEEEEECCHHHHH
Confidence 4457899999999999999999999999 99999999999999999999999999998874
No 283
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.12 E-value=3.8e-11 Score=101.17 Aligned_cols=60 Identities=15% Similarity=0.147 Sum_probs=55.6
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||+.+++++|+.+|+.| |.|..|.|+++..++.++|||||+|.+.++|.
T Consensus 19 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 78 (126)
T 3ex7_B 19 SVEGWILFVTGVHEEATEEDIHDKFAEY----GEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQ 78 (126)
T ss_dssp CSSSEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCBCTTTSSBCSCEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHH
Confidence 3446899999999999999999999999 99999999999989999999999999998874
No 284
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.11 E-value=3.4e-11 Score=101.19 Aligned_cols=58 Identities=22% Similarity=0.422 Sum_probs=54.7
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++|||+|||+.+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 92 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSC----GSINRITILCDKFSGHPKGYAYIEFAERNSVD 92 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTT----SCEEEEEEEEECTTSSCEEEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEEecCCCCCcccEEEEEECCHHHHH
Confidence 46899999999999999999999999 99999999999889999999999999998874
No 285
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.11 E-value=2.9e-11 Score=101.66 Aligned_cols=58 Identities=19% Similarity=0.249 Sum_probs=53.2
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCC---eEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS---VEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~---I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++|||+|||+++|+++|+++|+.| |. |..|+|+++.. |.++|||||+|.+.++|.
T Consensus 15 ~~~~~l~V~nLp~~~te~~l~~~F~~~----G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~ 75 (118)
T 2db1_A 15 GEGYVVKLRGLPWSCSIEDVQNFLSDC----TIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVK 75 (118)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHTTTS----CBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc----CCccCceeEEEEECCC-CCCCeEEEEEECCHHHHH
Confidence 346899999999999999999999999 77 89999999977 999999999999988874
No 286
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.11 E-value=3.8e-11 Score=99.25 Aligned_cols=59 Identities=15% Similarity=0.161 Sum_probs=54.8
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeE--------EEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--------AVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~--------~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++|||+|||+.+++++|+++|+.| |.|. .|+|+++..+|.++|||||+|.+.++|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 79 (113)
T 2cpe_A 13 SDNSAIYVQGLNDSVTLDDLADFFKQC----GVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAK 79 (113)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHTTT----SCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhc----CCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHH
Confidence 456899999999999999999999999 8999 6999999889999999999999998874
No 287
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.11 E-value=2.7e-11 Score=95.20 Aligned_cols=57 Identities=23% Similarity=0.368 Sum_probs=52.9
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCC-CccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRV-GKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~-~kGfAFV~F~s~e~A~ 396 (397)
.++|||+|||..+++++|+++|+.| |.|..|.|+++..++. ++|||||+|.+.++|.
T Consensus 4 ~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~ 61 (88)
T 4a8x_A 4 PTKVHIGRLTRNVTKDHIMEIFSTY----GKIKMIDMPVERMHPHLSKGYAYVEFENPDEAE 61 (88)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTT----SCEEEEECCEETTEEEEECSEEEEEESSHHHHH
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHH
Confidence 4799999999999999999999999 9999999999987666 8999999999998874
No 288
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=2.8e-11 Score=100.80 Aligned_cols=58 Identities=28% Similarity=0.409 Sum_probs=52.8
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCC---CCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM---RVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~t---g~~kGfAFV~F~s~e~A~ 396 (397)
...++|||+|||+.+++++|+++|+.| |.|. +.++.+..+ |.++|||||+|.+.++|.
T Consensus 6 ~~~~~lfVgnLp~~~te~~L~~~F~~~----G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~ 66 (114)
T 2dnl_A 6 SGSRKVFVGGLPPDIDEDEITASFRRF----GPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQ 66 (114)
T ss_dssp SCCCCEEEECCCTTCCHHHHHHHTTTT----CCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHH
T ss_pred CCCCEEEEcCCCCCCCHHHHHHHHHhc----CCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHH
Confidence 346899999999999999999999999 8999 899988877 799999999999998874
No 289
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.11 E-value=8.9e-11 Score=97.03 Aligned_cols=59 Identities=22% Similarity=0.299 Sum_probs=54.2
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|..| |.|..|+|+++. ++.++|||||+|.+.++|.
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~ 70 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMA----GVVVRADILEDK-DGKSRGIGTVTFEQSIEAV 70 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTT----SCEEEEEEEECT-TCSEEEEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCeeeEEEEEECCHHHHH
Confidence 3457899999999999999999999999 999999999997 5999999999999988874
No 290
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.11 E-value=1.6e-11 Score=98.14 Aligned_cols=59 Identities=25% Similarity=0.383 Sum_probs=53.7
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|||+.+++++|+++|..| |.|..+.++.+..++.++|||||+|.+.++|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~ 71 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGY----QVIPGSVCLKYNEKGMPTGEAMVAFESRDEAT 71 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTS----CBCTTCCEEEECTTSCEEEEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCccceEEEEeCCCCCEeeEEEEEECCHHHHH
Confidence 345899999999999999999999999 89999999999889999999999999998874
No 291
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.11 E-value=3.9e-11 Score=102.78 Aligned_cols=60 Identities=22% Similarity=0.439 Sum_probs=55.9
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||..+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.++|.
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~ 98 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERY----GPIESVKIVCDRETRQSRGYGFVKFQSGSSAQ 98 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHH----SCEEEEEEEEETTTTEEEEEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEcCCCCCcceEEEEEECCHHHHH
Confidence 3456899999999999999999999999 99999999999999999999999999998874
No 292
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.10 E-value=1.7e-11 Score=97.22 Aligned_cols=55 Identities=24% Similarity=0.478 Sum_probs=52.2
Q ss_pred cceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 337 ~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
++|||+|||..+++++|+++|+.| |.|..|+|+++..+|.++|||||+|.+.+ |.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~ 56 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQF----GKVFNVKLIYDRETKKPKGFGFVEMQEES-VS 56 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHH----TCCSEEEECCCSSSCCCCEEEEEEECTTH-HH
T ss_pred cEEEECCCCCCCCHHHHHHHHHhc----CCEEEEEEEEcCCCCCcceEEEEEECCHH-HH
Confidence 589999999999999999999999 99999999999999999999999999988 64
No 293
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.10 E-value=5.7e-11 Score=100.88 Aligned_cols=55 Identities=18% Similarity=0.269 Sum_probs=50.0
Q ss_pred ccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 332 LYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 332 ~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++++|||+|||+.+++++|+++|++| |.|..|+|+++ +|||||+|.+.++|.
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~f----G~V~~v~i~~~------kG~AFVeF~~~e~A~ 81 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPF----GKVTNLLMLKG------KNQAFIEMNTEEAAN 81 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTT----SCCCEEEEEGG------GTEEEEECSCHHHHH
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEeCC------CCEEEEEECCHHHHH
Confidence 34567899999999999999999999999 99999999875 789999999998874
No 294
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.10 E-value=5e-11 Score=99.45 Aligned_cols=58 Identities=22% Similarity=0.368 Sum_probs=52.3
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.....+|||+|||+++++++|+++|+.| .|..|+|+++.. |+++|||||+|.+.++|.
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-----~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~ 70 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-----RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTF 70 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-----CCCEEEECCCTT-CCCCSEEEEECSSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-----CeeEEEEEECCC-CCCCeEEEEEECCHHHHH
Confidence 3446899999999999999999999998 488999999976 999999999999998874
No 295
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.09 E-value=3.8e-11 Score=101.35 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=53.1
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||+.+++++|+++|..| |.|..+.++.+..+|.++|||||+|.+.++|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~ 81 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKL----DIVEDSIYIAYGPNGKATGEGFVEFRNEADYK 81 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSS----CBCTTTCEEEECTTSSEEEEEEEEBSSSHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhc----CCccceEEEEECCCCCCCeEEEEEECCHHHHH
Confidence 3456899999999999999999999999 88988666676678999999999999998874
No 296
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.09 E-value=8.2e-11 Score=100.80 Aligned_cols=57 Identities=28% Similarity=0.392 Sum_probs=51.6
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeE--EEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVE--AVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~--~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++|||+|||+++|+++|+++|+.| + |. .|+|++|.. |+++|||||+|.+.++|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~----~-i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~ 98 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL----E-IVPNGITLPVDPE-GKITGEAFVQFASQELAE 98 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS----C-EEEEEEECCCCSS-SSSCSEEEEEESSTTHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC----C-ceeeEEEEEECCC-CCCceEEEEEECCHHHHH
Confidence 346889999999999999999999999 4 55 899999987 999999999999998875
No 297
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.09 E-value=2.7e-11 Score=99.81 Aligned_cols=58 Identities=12% Similarity=0.203 Sum_probs=53.1
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCC---eEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS---VEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~---I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++|||+|||+.+|+++|+++|..| |. |..|+|+++.. |.++|||||+|.+.++|.
T Consensus 9 ~~~~~l~V~nLp~~~te~~l~~~F~~~----g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~ 69 (107)
T 2lmi_A 9 DDVFLIRAQGLPWSCTMEDVLNFFSDC----RIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQ 69 (107)
T ss_dssp SSCCEEEEECCCSSCCSHHHHHHTTTS----CBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHH
T ss_pred CCccEEEEeCCCCCCCHHHHHHHHHhc----CCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHH
Confidence 456899999999999999999999998 65 89999999987 999999999999988774
No 298
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.09 E-value=8e-11 Score=103.03 Aligned_cols=59 Identities=24% Similarity=0.416 Sum_probs=55.6
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|||+.+++++|+++|+.| |.|..|.|+++..++.++|||||+|.+.++|.
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~ 95 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIYELFSKS----GDIKKIIMGLDKMKKTACGFCFVEYYSRADAE 95 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEEECTTTCCEEEEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCccceEEEEEECCHHHHH
Confidence 456899999999999999999999999 99999999999999999999999999998874
No 299
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.09 E-value=3.1e-11 Score=97.17 Aligned_cols=60 Identities=25% Similarity=0.362 Sum_probs=54.7
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||+.+++++|+++|..| |.|..+.++.+..+|.++|||||+|.+.++|.
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~----G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~ 71 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGY----QVIPGSVCLKYNEKGMPTGEAMVAFESRDEAT 71 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTS----CCCTTTCEEEECSSSCEEEEEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHc----CCccceEEEEECCCCCeeeEEEEEECCHHHHH
Confidence 3456899999999999999999999999 88998889998889999999999999998874
No 300
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=9e-11 Score=96.58 Aligned_cols=54 Identities=19% Similarity=0.278 Sum_probs=49.1
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++++|||+|||+.+++++|+++|++| |.|..|+|+++ +|||||+|.+.++|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f----G~v~~v~i~~~------kg~aFVef~~~~~A~ 65 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPF----GKVTNILMLKG------KNQAFLELATEEAAI 65 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTT----SCEEEEEEETT------TTEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEECC------CCEEEEEECCHHHHH
Confidence 4567899999999999999999999999 99999999875 789999999998874
No 301
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.08 E-value=8.1e-11 Score=110.32 Aligned_cols=58 Identities=17% Similarity=0.287 Sum_probs=53.7
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCC--CeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES--SVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G--~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++|||+|||+.+|+++|+++|+.| | .|..|+|++|..+|.++|||||+|.+.++|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~----G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~ 126 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSL----GVNDILEIKFFENRANGQSKGFALVGVGSEASSK 126 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTT----TCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHH
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHH----CCcceEEEEEEecCCCCccceEEEEEECCHHHHH
Confidence 35789999999999999999999999 8 8999999999999999999999999998874
No 302
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.08 E-value=1e-10 Score=92.98 Aligned_cols=57 Identities=21% Similarity=0.383 Sum_probs=52.0
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++|||+|||+.+++++|+++|+.| .|..|+|+++ .+|.++|||||+|.+.++|.
T Consensus 8 ~~~~~l~v~nLp~~~t~~~l~~~F~~~-----~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~ 64 (91)
T 2dgw_A 8 TTCHTVKLRGAPFNVTEKNVMEFLAPL-----KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVK 64 (91)
T ss_dssp CCCCEEEEECCCSSCCHHHHHHHHTTS-----CCSEEEEEEC-TTSCEEEEEEEECSSHHHHH
T ss_pred CCccEEEEECCCCCCCHHHHHHHHhhC-----CceEEEEEEC-CCCCCceEEEEEECCHHHHH
Confidence 456899999999999999999999998 4889999999 77999999999999998874
No 303
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.08 E-value=9.4e-11 Score=96.61 Aligned_cols=54 Identities=17% Similarity=0.110 Sum_probs=49.1
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++++|||+|||+.+|+++|+++|++| |.|..|+|++ .+|||||+|.+.++|.
T Consensus 18 ~~ps~~l~V~NLp~~~te~~L~~lF~~f----G~V~~v~i~~------~kg~AFVef~~~~~A~ 71 (100)
T 3r27_A 18 TPASPVVHIRGLIDGVVEADLVEALQEF----GPISYVVVMP------KKRQALVEFEDVLGAC 71 (100)
T ss_dssp CCCCSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEEET------TTTEEEEEESSHHHHH
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHhcc----CCEEEEEEEc------CCCEEEEEECCHHHHH
Confidence 4567999999999999999999999999 9999999975 3789999999998874
No 304
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.08 E-value=1.7e-10 Score=93.82 Aligned_cols=58 Identities=24% Similarity=0.443 Sum_probs=52.5
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||+.+++++|+++|+.| |.|..|+|+++.. .++|||||+|.+.++|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~----G~v~~v~i~~~~~--~~~g~afV~f~~~~~a~ 69 (103)
T 2cq3_A 12 KSTPKRLHVSNIPFRFRDPDLRQMFGQF----GKILDVEIIFNER--GSKGFGFVTFENSADAD 69 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHGGGT----SCEEEEEEECCTT--TTCCEEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCC--CCcEEEEEEECCHHHHH
Confidence 3456899999999999999999999999 9999999999864 38999999999998874
No 305
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.07 E-value=1.3e-10 Score=94.39 Aligned_cols=58 Identities=24% Similarity=0.373 Sum_probs=52.3
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++.. .++|||||+|.+.++|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~i~~~~~--~~~g~afV~f~~~~~a~ 69 (103)
T 2cqi_A 12 DGQPRTLYVGNLSRDVTEVLILQLFSQI----GPCKSCKMITEHT--SNDPYCFVEFYEHRDAA 69 (103)
T ss_dssp SCCCCEEEEESCCTTCCHHHHHHHHHHH----SCEEEEEEECCCC--SSCCEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCccCCHHHHHHHHHhc----CCEeEEEEEecCC--CCCCEEEEEECCHHHHH
Confidence 3457899999999999999999999999 9999999999954 37999999999998874
No 306
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.06 E-value=1.5e-10 Score=94.95 Aligned_cols=56 Identities=14% Similarity=0.196 Sum_probs=51.0
Q ss_pred cccceecCCCCccC------cHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDV------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~v------teedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++|||+|||+.+ ++++|+.+|+.| |.|..|+|++ .+|.++|||||+|.+.++|.
T Consensus 14 ~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~----G~v~~v~i~~--~~g~~~G~afV~f~~~~~A~ 75 (105)
T 2nlw_A 14 IDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKF----GKITNDFYPE--EDGKTKGYIFLEYASPAHAV 75 (105)
T ss_dssp CCSEEEEESCCCCCTTTTTHHHHHHHHHHGGG----SCEEEEECCC--BTTBSCCEEEEEECSSSHHH
T ss_pred CCCEEEEeCCCcchhhhhHHHHHHHHHHHhcC----CCEEEEEeeC--CCCCeeeEEEEEECCHHHHH
Confidence 36899999999999 789999999999 9999999983 57999999999999998874
No 307
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=4.7e-11 Score=94.47 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=48.7
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++|||+|||+.+++++|+++|+.| |.|..|+|+++ ++|||||+|.+.++|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~-----~~g~afV~f~~~~~a~ 56 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQY----GDVMDVFIPKP-----FRAFAFVTFADDQIAQ 56 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTT----SCCCEEECCSS-----CCSCCEEECSCHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHc----CCeeEEEEecC-----CCCEEEEEECCHHHHH
Confidence 45899999999999999999999999 99999999875 6899999999998874
No 308
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.06 E-value=1.7e-10 Score=95.42 Aligned_cols=54 Identities=19% Similarity=0.180 Sum_probs=48.9
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++++|||+|||+.+++++|+++|++| |.|..|+|+++ +|||||+|.+.++|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~f----G~V~~v~i~~~------kg~aFVef~~~~~A~ 65 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKF----GTICYVMMMPF------KRQALVEFENIDSAK 65 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTT----SCEEEEEEETT------TTEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEECC------CCEEEEEECCHHHHH
Confidence 4567899999999999999999999999 99999999764 789999999998874
No 309
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.04 E-value=1.5e-10 Score=93.37 Aligned_cols=57 Identities=19% Similarity=0.235 Sum_probs=51.5
Q ss_pred cccccceecCCCCccCcHHHHH----HHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIY----QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~----~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||+.+++++|+ ++|+.| |.|..|+|+++..+ +|||||+|.+.++|.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~----G~v~~v~i~~~~~~---rg~afV~f~~~~~A~ 66 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARH----GKVKSVELSPHTDY---QLKAVVQMENLQDAI 66 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECSCCST---TCCEEEEESSHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhcccc----CcEEEEEEEeCCCC---CeEEEEEECCHHHHH
Confidence 3456899999999999999999 999999 99999999999764 899999999998874
No 310
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.03 E-value=9e-11 Score=96.91 Aligned_cols=54 Identities=9% Similarity=0.146 Sum_probs=48.9
Q ss_pred cccccceecCCCCc-cCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~-~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+++++|||+|||+ .+++++|+++|++| |.|..|+|+++ +|||||+|.+.++|.
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~~lF~~f----G~V~~v~i~~~------kg~aFVef~~~~~A~ 66 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLLQLVEPF----GVISNHLILNK------INEAFIEMATTEDAQ 66 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHHTTTGGG----SCEEEEEECSS------SSCEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCcCCHHHHHHHHHhc----CCEEEEEEEcC------CCEEEEEECCHHHHH
Confidence 34678999999999 99999999999999 99999999875 479999999998875
No 311
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.02 E-value=4.1e-10 Score=111.89 Aligned_cols=74 Identities=16% Similarity=0.289 Sum_probs=61.7
Q ss_pred CCccCEEEEec--CCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHH
Q 015974 222 GKLLRTIFVGN--LPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (397)
Q Consensus 222 ~~~~rtVFVgN--Lp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~ 299 (397)
....++||||| |++.+|+++|+++|++||.|.+|.+.. ++|||||+|.+.++|++
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-----------------------~kgfaFV~f~~~~~A~~ 71 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-----------------------NKPYSFARYRTTEESKR 71 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-----------------------TCSEEEEEESSHHHHHH
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-----------------------CCCEEEEEECCHHHHHH
Confidence 44578999999 578999999999999999999887611 35899999999999999
Q ss_pred HH-HhcCceec---ce--eeEEecC
Q 015974 300 AL-AFNMAVIG---GN--HIRLDRA 318 (397)
Q Consensus 300 Al-~lng~~l~---Gr--~I~V~~a 318 (397)
|+ .|||..+. |+ .|.|.++
T Consensus 72 Ai~~lnG~~~~~~~g~~~~ly~~~~ 96 (345)
T 3tht_A 72 AYVTLNGKEVVDDLGQKITLYLNFV 96 (345)
T ss_dssp HHHHTTTCEEECTTSCEEECEEEEC
T ss_pred HHHHhCCCccccccCCceEEEEEEe
Confidence 99 69999883 45 5666665
No 312
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=2.2e-09 Score=88.19 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=60.0
Q ss_pred cCEEEEecCC-------CCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHH
Q 015974 225 LRTIFVGNLP-------LKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQST 297 (397)
Q Consensus 225 ~rtVFVgNLp-------~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A 297 (397)
.+.|.|.-.+ ..+|+++|+.+|++||.|..|+|+. .++|||||+|.+.++|
T Consensus 10 ~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~----------------------~~rGfaFVeF~~~~~A 67 (100)
T 2d9o_A 10 TPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSS----------------------KKPGTAVVEFATVKAA 67 (100)
T ss_dssp SCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEES----------------------SSSSEEEEEESCHHHH
T ss_pred cceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEcc----------------------CCCCEEEEEECCHHHH
Confidence 3456666544 4589999999999999999998841 2569999999999999
Q ss_pred HHHHHhcCceecceeeEEecCCCC
Q 015974 298 EAALAFNMAVIGGNHIRLDRACPP 321 (397)
Q Consensus 298 ~~Al~lng~~l~Gr~I~V~~a~~~ 321 (397)
..||.. +..+.|++|.|.++.++
T Consensus 68 ~~Ai~~-~~~~~g~~l~V~~a~~~ 90 (100)
T 2d9o_A 68 ELAVQN-EVGLVDNPLKISWLEGQ 90 (100)
T ss_dssp HHHHHT-CCBCSSSBCEEECSSCC
T ss_pred HHHHHh-cCCCCCCeEEEEEccCC
Confidence 999953 44468999999998754
No 313
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=2.4e-10 Score=93.94 Aligned_cols=57 Identities=23% Similarity=0.424 Sum_probs=51.0
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+.+ +.++|||||+|.+.++|.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~~---~~~~g~afV~f~~~~~A~ 75 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKY----GAIRDIDLKNR---RGGPPFAFVEFEDPRDAE 75 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGG----SCEEEEEECCS---SSSSCCEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEEC---CCCCcEEEEEECCHHHHH
Confidence 3456899999999999999999999999 99999999765 568999999999998874
No 314
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.02 E-value=1.8e-10 Score=95.19 Aligned_cols=58 Identities=26% Similarity=0.459 Sum_probs=52.5
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||..+++++|+++|+.| |.|..|+|+++. +.++|||||+|.+.++|.
T Consensus 26 ~~~~~~l~V~nLp~~~te~~l~~~F~~~----G~i~~v~i~~~~--~~~kg~afV~f~~~~~A~ 83 (109)
T 2err_A 26 KSQPKRLHVSNIPFRFRDPDLRQMFGQF----GKILDVEIIFNE--RGSKGFGFVTFENSADAD 83 (109)
T ss_dssp TTCCCEEEEESCCTTCCHHHHHHHGGGT----CCCSCEEECCBT--TBCTTEEEEECCCSHHHH
T ss_pred CCCCCEEEEECCCCcCCHHHHHHHHHhc----CCEEEEEEEECC--CCCceEEEEEECCHHHHH
Confidence 4457899999999999999999999999 999999999985 458999999999998874
No 315
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.02 E-value=1.9e-10 Score=105.01 Aligned_cols=99 Identities=14% Similarity=0.171 Sum_probs=68.9
Q ss_pred CHHHHHHHHH-h--cCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCcHHHHHHHhccCCCCCCCeEE
Q 015974 293 SEQSTEAALA-F--NMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA 369 (397)
Q Consensus 293 s~e~A~~Al~-l--ng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~ 369 (397)
+.+.+..|+. . ....+.+....|.....................++|||+|||+.+++++|+++|+.| |.|..
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~v~~ 138 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDK----GQVLN 138 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTS----CCEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcC----CCEEE
Confidence 4566777774 3 344555555555554211000000000011235899999999999999999999999 99999
Q ss_pred EEEeeCCCCCCCccEEEEEeccccccc
Q 015974 370 VRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 370 Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
|+|+++. +|.++|||||+|.+.++|.
T Consensus 139 v~i~~~~-~~~~kG~aFVeF~~~e~A~ 164 (193)
T 2voo_A 139 IQMRRTL-HKAFKGSIFVVFDSIESAK 164 (193)
T ss_dssp EEEEECT-TCCEEEEEEEEESSHHHHH
T ss_pred EEEEECC-CCCcccEEEEEECCHHHHH
Confidence 9999986 4999999999999998874
No 316
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.01 E-value=2.5e-10 Score=94.59 Aligned_cols=56 Identities=23% Similarity=0.558 Sum_probs=50.7
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+++++|||+|||+.+++++|+++|+.| |.|..|+|+++ +.++|||||+|.+.++|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~i~~~---~~~~g~afV~f~~~~~A~ 61 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKY----GPIRQIRVGNT---PETRGTAYVVYEDIFDAK 61 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTT----SCEEEEEEECS---TTTTTCEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeC---CCCCcEEEEEECCHHHHH
Confidence 346899999999999999999999999 99999999987 456999999999998874
No 317
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.56 E-value=3.6e-11 Score=100.12 Aligned_cols=59 Identities=20% Similarity=0.204 Sum_probs=54.9
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEE--------EEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEA--------VRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~--------Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|||+.+++++|+++|+.| |.|.. |+|+++..++.++|||||+|.+.++|.
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~ 71 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQI----GIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAK 71 (116)
Confidence 346899999999999999999999999 89998 999999888999999999999998885
No 318
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.99 E-value=2.7e-10 Score=98.03 Aligned_cols=51 Identities=10% Similarity=0.180 Sum_probs=49.0
Q ss_pred cceecCCC----CccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEecc
Q 015974 337 KTVFVGNL----PFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT 391 (397)
Q Consensus 337 ~tLfVgNL----p~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s 391 (397)
..|||+|| |+.+++.+|+++|+.| |.|..|.++.|+.||.++|||||.|.+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~f----GeV~~~~li~Dp~Tg~slGfgfVef~d 57 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKY----GEISHFEAFNDPNSALPLHVYLIKYAS 57 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTT----SCCSEEEEEECTTTCCEEEEEEEECC-
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhc----CCeEEEEEEecCCCCceeeEEEEEECC
Confidence 68999999 9999999999999999 999999999999999999999999996
No 319
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.98 E-value=6.1e-10 Score=87.01 Aligned_cols=54 Identities=19% Similarity=0.380 Sum_probs=48.9
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||..+++++|+++|+.| |.|..|+|+++ +|||||+|.+.++|.
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~----G~i~~~~~~~~------kg~afV~f~~~~~A~ 62 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQF----GEIRTITVVQR------QQCAFIQFATRQAAE 62 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTT----SCEEEEEEEGG------GTEEEEEESSHHHHH
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhC----CCEeEEEEECC------CCEEEEEECCHHHHH
Confidence 4456899999999999999999999999 99999999874 789999999998874
No 320
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.97 E-value=2.1e-10 Score=95.03 Aligned_cols=58 Identities=21% Similarity=0.292 Sum_probs=52.1
Q ss_pred cccceecCCCCccCcHHHHH---HHhccCCCCCCCeEEEEEeeCCCCC---CCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIY---QLFCGLNDLESSVEAVRVIRHPHMR---VGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~---~~F~~f~~~~G~I~~Vri~rd~~tg---~~kGfAFV~F~s~e~A~ 396 (397)
..++|||+|||+.+++++|+ ++|++| |.|..|.|+++..++ .++|||||+|.+.++|+
T Consensus 14 ~~~~l~V~nLp~~~~~~~l~~~~~~F~~~----G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~ 77 (111)
T 2cpi_A 14 QKNLVFVVGLSQRLADPEVLKRPEYFGKF----GKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDAL 77 (111)
T ss_dssp CSSCEEEEEECTTTCCHHHHHSTTTTTTT----SCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhhcc----CCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHH
Confidence 46899999999999999999 999999 999999999987644 56699999999998875
No 321
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.96 E-value=5.9e-10 Score=91.72 Aligned_cols=53 Identities=19% Similarity=0.196 Sum_probs=48.3
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||+.+++++|+++|..| |.|..|.|+.+ |||||+|.+.++|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~~~i~~~-------g~afV~f~~~~~a~ 64 (108)
T 1x4c_A 12 RRSENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRD-------GTGVVEFVRKEDMT 64 (108)
T ss_dssp CSCCCEEEEESCCSSCCHHHHHHHHGGG----SCEEEEEEETT-------TEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEeEEEEecC-------CEEEEEECCHHHHH
Confidence 3456899999999999999999999999 99999999887 79999999988774
No 322
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=4.1e-10 Score=91.13 Aligned_cols=56 Identities=20% Similarity=0.344 Sum_probs=49.5
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|..| |.| +|+++ .++.++|||||+|.+.++|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----g~v---~~~~~-~~g~~~g~afV~f~~~~~A~ 67 (101)
T 2fc9_A 12 SGESKTLVLSNLSYSATEETLQEVFEKA----TFI---KVPQN-QNGKSKGYAFIEFASFEDAK 67 (101)
T ss_dssp SCCCSEEEEESCCTTCCHHHHHHHCSSC----SEE---ECCBC-SSSCBCSEEEEECSSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhC----CEE---EEEEC-CCCCEeeEEEEEECCHHHHH
Confidence 4457999999999999999999999999 866 67777 67999999999999998875
No 323
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.95 E-value=2.3e-09 Score=90.12 Aligned_cols=76 Identities=17% Similarity=0.129 Sum_probs=63.0
Q ss_pred CccCEEEEecCCCCC----------cHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEec
Q 015974 223 KLLRTIFVGNLPLKV----------KKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFK 292 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~----------Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~ 292 (397)
..+++|.|.||=... .+++|++.|++||.|.+|.|.+. ..+|||||.|.
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~---------------------~~~G~~fV~f~ 63 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKN---------------------SAQGNVYVKCP 63 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTT---------------------CTTCCEEEECS
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecC---------------------CCcEEEEEEEC
Confidence 357889999983221 24689999999999999988332 13599999999
Q ss_pred CHHHHHHHH-HhcCceecceeeEEecCC
Q 015974 293 SEQSTEAAL-AFNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 293 s~e~A~~Al-~lng~~l~Gr~I~V~~a~ 319 (397)
+.++|.+|+ .|||..|.||.|.|.++.
T Consensus 64 ~~e~A~~Ai~~lnG~~f~GR~i~v~~~~ 91 (114)
T 3s6e_A 64 SIAAAIAAVNALHGRWFAGKMITAAYVP 91 (114)
T ss_dssp SHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CHHHHHHHHHHhCCCEECCEEEEEEEEc
Confidence 999999999 699999999999999975
No 324
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.95 E-value=6.7e-10 Score=89.89 Aligned_cols=57 Identities=25% Similarity=0.384 Sum_probs=50.9
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| + .|+++++..++.++|||||+|.+.++|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----~---~~~~~~~~~~~~~~g~afV~f~~~~~A~ 68 (102)
T 2fc8_A 12 SQPSKTLFVKGLSEDTTEETLKESFDGS----V---RARIVTDRETGSSKGFGFVDFNSEEDAK 68 (102)
T ss_dssp SCCCSSEEEECCCTTCCHHHHHHTSTTC----S---EEEEEECSSSCSEEEEEEEECSSHHHHH
T ss_pred CCCCCEEEEeCCCCccCHHHHHHHhcCC----e---EEEEEecCCCCCcCcEEEEEECCHHHHH
Confidence 4567999999999999999999999987 3 6788888888999999999999998874
No 325
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.94 E-value=2.8e-10 Score=95.64 Aligned_cols=54 Identities=19% Similarity=0.383 Sum_probs=48.5
Q ss_pred cccccceecCCCCcc-CcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~-vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++++|||+|||++ +++++|+++|++| |.|..|+|++ ++|||||+|.+.++|.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~f----G~V~~v~i~~------~kg~aFVef~~~~~A~ 76 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPY----GKIKNYILMR------MKSQAFIEMETREDAM 76 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTT----SCCSEEEEET------TTTEEEEECSSHHHHH
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhc----CCEEEEEEec------CCCEEEEEECCHHHHH
Confidence 446789999999998 9999999999999 9999999964 4789999999998874
No 326
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.94 E-value=4.6e-11 Score=96.82 Aligned_cols=58 Identities=16% Similarity=0.210 Sum_probs=51.9
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++|||+|||+.+++++|+++|..| |.|.. .++.+..+|.++|||||+|.+.++|.
T Consensus 15 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~ 72 (101)
T 1fj7_A 15 TTPFNLFIGNLNPNKSVAELKVAISEL----FAKND-LAVVDVRTGTNRKFGYVDFESAEDLE 72 (101)
T ss_dssp SCSEEEEEECCCTTSCHHHHHHHHHHH----HHHHT-CCCCEEEEETTTTEEEEEESSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcce-EEEecCCCCCcCcEEEEEECCHHHHH
Confidence 346899999999999999999999999 88887 67777778999999999999998874
No 327
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.93 E-value=6.9e-10 Score=89.24 Aligned_cols=54 Identities=15% Similarity=0.274 Sum_probs=48.4
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+++ +|||||+|.+.++|+
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~v~~~~~------~g~afV~f~~~~~A~ 67 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRF----GSIRTIDHVKG------DSFAYIQYESLDAAQ 67 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTT----SCEEEEEECSS------SCCEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeeEEEEeCC------CCEEEEEECCHHHHH
Confidence 3456899999999999999999999999 99999999754 789999999998874
No 328
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=9.1e-10 Score=87.31 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=46.9
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|||..+++++|+++|+.| |.|..|+|+ +|||||+|.+.++|.
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~--------~g~afV~f~~~~~A~ 56 (90)
T 2dnq_A 6 SGMVKLFIGNLPREATEQEIRSLFEQY----GKVLECDII--------KNYGFVHIEDKTAAE 56 (90)
T ss_dssp SCCEEEEEESCCSSCCHHHHHHHHHTS----SCEEEEEEE--------TTEEEEEESSHHHHH
T ss_pred CCCeEEEEeCCCCCCCHHHHHHHHHhC----CCEEEEEEE--------CCEEEEEECCHHHHH
Confidence 456899999999999999999999999 999999997 679999999998874
No 329
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.93 E-value=2.3e-10 Score=91.74 Aligned_cols=57 Identities=23% Similarity=0.377 Sum_probs=50.6
Q ss_pred cccccceecCCCCccCcHHHHH----HHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIY----QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~----~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++++|||+|||..+++++|+ ++|+.| |.|..|.|++ +|.++|||||+|.+.++|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~----G~i~~v~i~~---~~~~~g~afV~f~~~~~A~ 65 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRF----GQILDILVSR---SLKMRGQAFVIFKEVSSAT 65 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGG----SCEEEEECCH---HHHHTTCEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhC----CCEEEEEEEc---CCCcCcEEEEEeCCHHHHH
Confidence 3457899999999999999999 999999 9999999875 4778999999999998874
No 330
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.92 E-value=6.6e-10 Score=95.12 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=49.5
Q ss_pred cccccceecCCCCccCcHHHHH----HHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIY----QLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~----~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+ ++|++| |.|..|.+.+ ++.++|||||+|.+.++|.
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~----G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~ 86 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQ----GDILDIVVDL---SDDNSGKAYIVFATQESAQ 86 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHH----SCEEEEEECC---CCSSCCCEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccC----CCeEEEEecc---CCCcCCEEEEEECCHHHHH
Confidence 3457899999999999999875 799999 9999998864 4789999999999988874
No 331
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.92 E-value=8.6e-10 Score=90.84 Aligned_cols=70 Identities=26% Similarity=0.403 Sum_probs=55.2
Q ss_pred cceeeEEecCCCCccccCCCCCCccccccceecCCCCcc-CcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEE
Q 015974 309 GGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYV 387 (397)
Q Consensus 309 ~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~-vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV 387 (397)
.|..|.|..+..... .......++|||+|||+. +++++|+++|+.| |.|..|.| ++|||||
T Consensus 6 ~g~~~~~~~s~~~~~------~~~~~~~~~l~V~nl~~~~~t~~~l~~~F~~~----G~v~~v~i--------~~g~afV 67 (110)
T 1wf1_A 6 SGMSLKLQASNVTNK------NDPKSINSRVFIGNLNTALVKKSDVETIFSKY----GRVAGCSV--------HKGYAFV 67 (110)
T ss_dssp CSCCCCCCCCCSCCS------CCCTTCSSEEEECSCCCSSCCHHHHHHHHGGG----SCCSEEEE--------ETTEEEE
T ss_pred CCcccccccCCCCCC------CCCCCCCcEEEEeCCCcccCCHHHHHHHHHhC----CCeEEEEE--------eCCEEEE
Confidence 466677766653221 111234589999999999 9999999999999 99999998 5789999
Q ss_pred Eeccccccc
Q 015974 388 LFKTRDNWI 396 (397)
Q Consensus 388 ~F~s~e~A~ 396 (397)
+|.+.++|.
T Consensus 68 ~f~~~~~A~ 76 (110)
T 1wf1_A 68 QYSNERHAR 76 (110)
T ss_dssp ECSSSHHHH
T ss_pred EECCHHHHH
Confidence 999998874
No 332
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.92 E-value=1.6e-10 Score=95.60 Aligned_cols=56 Identities=18% Similarity=0.322 Sum_probs=48.1
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCe----EEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSV----EAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I----~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|..| |.| ..+++. +|.++|||||+|.+.++|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~----G~v~~~~~~~~~~----~g~~~g~afV~f~~~~~a~ 81 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARF----QEKKGPPIQFRMM----TGRMRGQAFITFPNKEIAW 81 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHH----HHSSSSCCEEEEE----CSSSCSEEEEECSSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHh----CCccceEEEEEcC----CCccceEEEEEECCHHHHH
Confidence 3457899999999999999999999999 888 445544 6889999999999998874
No 333
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.91 E-value=5e-10 Score=90.62 Aligned_cols=51 Identities=25% Similarity=0.374 Sum_probs=47.5
Q ss_pred cceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 337 ~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
++|||+|||+.+++++|+++|+.| |.|..|.|+++ ++|||||+|.+.++|.
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~----G~i~~v~i~~~-----~~g~afV~f~~~~~a~ 51 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYY----GPLRTVWIARN-----PPGFAFVEFEDPRDAE 51 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHH----CCCSEEEEESS-----SSSEEEEECSSHHHHH
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeeC-----CCCEEEEEECCHHHHH
Confidence 479999999999999999999999 99999999887 7899999999998874
No 334
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=98.91 E-value=6.7e-10 Score=100.09 Aligned_cols=59 Identities=25% Similarity=0.369 Sum_probs=54.7
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+.+. +|.++|||||+|.+.++|.
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~~~F~~~----G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~ 143 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQELFAEF----GTLKKAAVDYDR-SGRSLGTADVHFERRADAL 143 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHHHHHHHT----SCCSEEEECCCT-TSSCSCCEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEEECC-CCCEeeEEEEEeCCHHHHH
Confidence 3456899999999999999999999999 999999999998 8999999999999998874
No 335
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.91 E-value=9.6e-10 Score=88.73 Aligned_cols=54 Identities=30% Similarity=0.528 Sum_probs=48.6
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|+|+++ +|||||+|.+.++|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~i~~v~~~~~------kg~afV~f~~~~~a~ 65 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKY----GKAGEVFIHKD------KGFGFIRLETRTLAE 65 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTT----CCCSEEEEETT------TTEEEEECSSSHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhc----CCeEEEEEecC------CCEEEEEECCHHHHH
Confidence 4456899999999999999999999999 99999999754 789999999998874
No 336
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.90 E-value=9.1e-10 Score=90.53 Aligned_cols=52 Identities=25% Similarity=0.441 Sum_probs=48.1
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++|||+|||..+++++|+.+|+.| |.|..|+|+++ +|||||+|.+.++|.
T Consensus 24 ~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~i~~~------~g~afV~f~~~~~a~ 75 (109)
T 1x4g_A 24 KNCTVYCGGIASGLTDQLMRQTFSPF----GQIMEIRVFPE------KGYSFVRFSTHESAA 75 (109)
T ss_dssp SCCEEEEECCSSCCCHHHHHHHHHHH----SCEEEEEEETT------TTEEEEEESSHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEeCC------CCEEEEEECCHHHHH
Confidence 46899999999999999999999999 99999999876 789999999998874
No 337
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.88 E-value=8.6e-10 Score=88.82 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=47.5
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+..|||+||++.+|+++|+++|.+| |.|.++.++. ++|||||+|.+.++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~----G~V~~~~l~~------~kGfaFVey~~~~eA~ 57 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQH----GPLVSFHPYL------NQGIALCKYTTREEAN 57 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHH----SCEEEEEEET------TTTEEEEEESSHHHHH
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhh----CCEEEEEEcC------CCcEEEEEECCHHHHH
Confidence 35789999999999999999999999 9999999854 6899999999998874
No 338
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.88 E-value=1.3e-09 Score=88.23 Aligned_cols=52 Identities=17% Similarity=0.383 Sum_probs=47.2
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++|||+|||..+++++|+.+|+.| |.|..|+|+ .++|||||+|.+.++|.
T Consensus 26 ~~~~l~V~nlp~~~~~~~l~~~f~~~----G~i~~~~~~------~~~g~afV~f~~~~~A~ 77 (101)
T 2la4_A 26 RVTTAYIGNIPHFATEADLIPLFQNF----GFILDFKHY------PEKGCCFIKYDTHEQAA 77 (101)
T ss_dssp SCCEEEEESCCTTCCHHHHHHHHHTT----SCCSEEEEE------TTTTEEEEECSSHHHHH
T ss_pred CCCEEEEcCCCcccCHHHHHHHHHhC----CCEEEEEEe------cCCCEEEEEECCHHHHH
Confidence 35899999999999999999999999 999999997 35899999999988774
No 339
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.5e-09 Score=87.22 Aligned_cols=52 Identities=19% Similarity=0.539 Sum_probs=46.1
Q ss_pred cccccceecCCCCc-cCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~-~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+ .+++++|+.+|+.| |.|..|+|. +|||||+|.+.++|.
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~----G~v~~v~i~--------~g~afV~f~~~~~A~ 59 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIK--------NAFGFIQFDNPQSVR 59 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTT----CCCCEEEEE--------TTEEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEe--------CCEEEEEECCHHHHH
Confidence 34578999999998 99999999999999 999999984 689999999998874
No 340
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.84 E-value=1.1e-09 Score=91.00 Aligned_cols=52 Identities=25% Similarity=0.208 Sum_probs=47.0
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++|||+|||+.+++++|+++|+.| |.|..|.|++ ++|||||+|.+.++|.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~v~i~~------~~g~afV~f~~~~~A~ 60 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRF----GSLGRVLLPE------GGITAIVEFLEPLEAR 60 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTT----SCEEEEECCS------SSSCEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEeC------CCCEEEEEeCCHHHHH
Confidence 35799999999999999999999999 9999999864 5789999999998874
No 341
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.84 E-value=2.4e-09 Score=86.67 Aligned_cols=52 Identities=19% Similarity=0.571 Sum_probs=47.1
Q ss_pred cccccceecCCCCc-cCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPF-DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~-~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+ .+++++|+++|+.| |.|..|+|. +|||||+|.+.++|.
T Consensus 19 ~~~~~~l~V~nLp~~~~t~~~L~~~F~~~----G~v~~v~i~--------~g~afV~f~~~~~A~ 71 (97)
T 2xnq_A 19 SHMKSRLFIGNLPLKNVSKEDLFRIFSPY----GHIMQINIK--------NAFGFIQFDNPQSVR 71 (97)
T ss_dssp CCTTCEEEEESCCSSCCCHHHHHHHHGGG----SCEEEEEEC--------SSEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhc----CCEEEEEEe--------CCEEEEEECCHHHHH
Confidence 44578999999998 99999999999999 999999983 789999999998874
No 342
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.84 E-value=1.2e-09 Score=91.14 Aligned_cols=51 Identities=20% Similarity=0.217 Sum_probs=46.1
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++|||+|||+.+++++|+++|..| |.|..|.|+.+ |||||+|.+.++|.
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~~~i~~~-------g~afV~f~~~~~a~ 65 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRD-------GTGVVEFVRKEDMT 65 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGG----SCEEEEEECTT-------SEEEEEESSHHHHH
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEecC-------CEEEEEECCHHHHH
Confidence 45899999999999999999999999 99999999776 89999999988874
No 343
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.84 E-value=2e-09 Score=89.02 Aligned_cols=52 Identities=23% Similarity=0.516 Sum_probs=47.4
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||+.+++++|+.+|+.| |.|..|.|+ +|||||+|.+.++|.
T Consensus 28 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~----G~i~~v~i~--------kg~afV~f~~~~~A~ 79 (108)
T 2jvo_A 28 ELSNTRLFVRPFPLDVQESELNEIFGPF----GPMKEVKIL--------NGFAFVEFEEAESAA 79 (108)
T ss_dssp CCSCSEEEECSSCTTCCHHHHHHHHTTT----SCCCEEEEE--------TTEEEEECSSHHHHH
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHhc----CCEEEEEEE--------CCEEEEEECCHHHHH
Confidence 3456899999999999999999999999 999999997 789999999998874
No 344
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.84 E-value=8.7e-10 Score=92.25 Aligned_cols=54 Identities=15% Similarity=0.089 Sum_probs=48.1
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCC-CeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES-SVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G-~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++|||+|||+++++++|+++|+.| | .|..|.|+.+ .++|||||+|.+.++|.
T Consensus 27 ~~~~l~VgnLp~~~te~dL~~~F~~~----G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~ 81 (111)
T 2jvr_A 27 KRYRITMKNLPEGCSWQDLKDLAREN----SLETTFSSVNTR----DFDGTGALEFPSEEILV 81 (111)
T ss_dssp CCEEEEEECSSCCCCHHHHHHHHHHH----TCCCSEEECSSC----SSSCCEEEEESSHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHh----CCeeEEEEEEcC----CCCCEEEEEECCHHHHH
Confidence 35799999999999999999999999 8 8999998643 47999999999998874
No 345
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.84 E-value=2.2e-09 Score=87.31 Aligned_cols=52 Identities=29% Similarity=0.457 Sum_probs=46.8
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..|.|+ +|||||+|.+.++|.
T Consensus 8 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~----G~i~~v~~~--------~~~afV~f~~~~~a~ 59 (103)
T 2dgu_A 8 MAKVKVLFVRNLANTVTEEILEKAFSQF----GKLERVKKL--------KDYAFIHFDERDGAV 59 (103)
T ss_dssp CCCCCCEEEECCCTTCCHHHHHHHHHHH----SCEEEEEEC--------SSCEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCEEEEEEE--------CCEEEEEeCCHHHHH
Confidence 3457899999999999999999999999 999999986 459999999998874
No 346
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=2.6e-09 Score=84.97 Aligned_cols=52 Identities=15% Similarity=0.294 Sum_probs=46.6
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+|||+.+++++|+++|+.| |.|..|.|+++ ||||+|.+.++|.
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~v~~v~~~~~--------~afV~f~~~~~a~ 58 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEY----GPVIECDIVKD--------YAFVHMERAEDAV 58 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTT----SCCCEEEECSS--------EEEEEESCHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhc----CCeEEEEEECC--------EEEEEECCHHHHH
Confidence 3456899999999999999999999999 99999999743 9999999988874
No 347
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=1.6e-09 Score=87.18 Aligned_cols=54 Identities=22% Similarity=0.349 Sum_probs=47.2
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++|||+|||+.+++++|+++|+.| |.|. ++++.+ .++|||||+|.+.++|.
T Consensus 17 ~~~~~l~V~nL~~~~t~~~l~~~F~~~----G~v~-~~~~~~----~~~g~afV~f~~~~~a~ 70 (97)
T 2e5j_A 17 PLAADVYVGNLPRDARVSDLKRALREL----GSVP-LRLTWQ----GPRRRAFLHYPDSAAAQ 70 (97)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHHT----TCCC-SEEEEE----TTTTEEEEECSSHHHHH
T ss_pred CCCCEEEEeCCCCcCcHHHHHHHHHhc----CCEE-EEEEcC----CCCcEEEEEECCHHHHH
Confidence 346899999999999999999999999 8887 677654 57899999999998874
No 348
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.83 E-value=4.1e-09 Score=84.26 Aligned_cols=53 Identities=21% Similarity=0.278 Sum_probs=46.1
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++|||+|||+.+++++|+.+|+.| |.|..| +.+..+|. ||||+|.+.++|.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~----G~v~~v--~~~~~~g~---~afV~f~~~~~a~ 59 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAF----GPVASV--VMDKDKGV---FAIVEMGDVGARE 59 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGT----SCEEEE--EECSSSCC---EEEEEESSHHHHH
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhc----CCeEEE--EEcCCCCc---EEEEEECCHHHHH
Confidence 45799999999999999999999999 999987 56655555 9999999988774
No 349
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.83 E-value=1.1e-09 Score=85.80 Aligned_cols=56 Identities=27% Similarity=0.541 Sum_probs=47.3
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCC-------CeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLES-------SVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G-------~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+.++|||+|||+.+++++|+++|+.|+.+.| .|..|++.++ +|||||+|.+.++|.
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~------kg~afV~f~~~~~a~ 67 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD------KNFAFLEFRSVDETT 67 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS------SSEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC------CcEEEEEcCCHHHHH
Confidence 4689999999999999999999999822124 7999998754 789999999998874
No 350
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.82 E-value=1.4e-09 Score=91.69 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=47.5
Q ss_pred cccccceec--CCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFV--GNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfV--gNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++++||| |||++.+++++|+++|++| |.|..|.|+. .+|||||+|.+.++|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~f----G~v~~v~i~~------~rgfaFV~f~~~~~A~ 77 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPP------NKPYSFARYRTTEESK 77 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHH----SCEEEEECCT------TCSCEEEEESSHHHHH
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhc----CCeEEEEEeC------CCCEEEEEECCHHHHH
Confidence 345788999 8899999999999999999 9999998864 3789999999998875
No 351
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.82 E-value=8.2e-10 Score=88.39 Aligned_cols=55 Identities=25% Similarity=0.451 Sum_probs=47.8
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.| |.|..| ..++.++|||||+|.+.++|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~----g~v~~~-----~~~~~~~g~afV~f~~~~~a~ 67 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELKEVFEDA----LEIRLV-----SQDGKSKGIAYIEFKSEADAE 67 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHHHHHCSE----EEECCE-----EETTEEEEEEEEEESSHHHHH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC----CcEEEe-----CCCCCcceEEEEEECCHHHHH
Confidence 3457899999999999999999999999 877766 245889999999999998874
No 352
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=5.6e-09 Score=84.18 Aligned_cols=54 Identities=28% Similarity=0.455 Sum_probs=47.0
Q ss_pred cccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+.++|||+|||+.+++++|+++|+.|+. |.|..|.++ +|||||+|.+.++|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~--g~v~~~~~~--------~g~afV~f~~~~~A~ 65 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKP--GAVERVKKI--------RDYAFVHFSNREDAV 65 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTST--TCEEEEEEC--------SSEEEEEESSHHHHH
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCC--cceEEEEEe--------CCeEEEEeCCHHHHH
Confidence 446789999999999999999999999854 779988874 569999999998874
No 353
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.79 E-value=3.8e-09 Score=83.68 Aligned_cols=51 Identities=22% Similarity=0.309 Sum_probs=46.2
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|||+.+++++|+++|+.| |.|..|+|++ +||||+|.+.++|.
T Consensus 7 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~~~--------~~afV~f~~~~~a~ 57 (90)
T 2dnp_A 7 GNTWKIFVGNVSAACTSQELRSLFERR----GRVIECDVVK--------DYAFVHMEKEADAK 57 (90)
T ss_dssp CCSCCEEEESCCTTCCHHHHHHHHHHH----SCEEEEEECS--------SCEEEEESCHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHcC----CCEEEEEEEC--------CEEEEEECCHHHHH
Confidence 456899999999999999999999999 9999999974 39999999998874
No 354
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.76 E-value=2.2e-09 Score=92.40 Aligned_cols=56 Identities=16% Similarity=0.259 Sum_probs=47.7
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEE--------EEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAV--------RVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~V--------ri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|||+.+|+++|+.+|+.| |.|..| ++. .+|.++|||||+|.+.++|.
T Consensus 43 ~~~~~l~V~nLp~~~te~~L~~~F~~~----G~i~~~~~~~~~di~~~---~~g~~~g~afV~f~~~~~A~ 106 (143)
T 3egn_A 43 EPNCRIYVKNLAKHVQEKDLKYIFGRY----VDFSSETQRIMFDIRLM---KEGRMKGQAFIGLPNEKAAA 106 (143)
T ss_dssp SCCSEEEEEEECTTCCHHHHHHHHGGG----CCTTCHHHHHHCEEEEE---EETTTEEEEEEECSSHHHHH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHh----CCcccccccceeeEEec---cCCCcccEEEEEeCCHHHHH
Confidence 456899999999999999999999999 777663 333 35889999999999998874
No 355
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=2.4e-09 Score=85.30 Aligned_cols=52 Identities=21% Similarity=0.345 Sum_probs=44.6
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCC-eEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESS-VEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~-I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|||+.+++++|+++|+.| |. |..+.+. ++|||||+|.+.++|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~----G~vv~~~~~~-------~~g~afV~f~~~~~A~ 58 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDR----KLPLAGQVLL-------KSGYAFVDYPDQNWAI 58 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHT----TCCCSSCEEE-------ETTEEEECCSCHHHHH
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHc----CCceEEEEEc-------CCCEEEEEECCHHHHH
Confidence 456899999999999999999999999 87 6666552 4789999999988874
No 356
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=5.8e-09 Score=83.38 Aligned_cols=55 Identities=16% Similarity=0.228 Sum_probs=48.0
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEE-EeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVR-VIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vr-i~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++|||+|||+.+++++|+.+|+.| |.|..|+ |+.+..++ .|||+|.+.++|.
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~----G~v~~~~~i~~~~~~~----~afV~f~~~~~a~ 68 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQY----GVVESCEQVNTDSETA----VVNVTYSSKDQAR 68 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHH----SCEEEEEEECCSSSSE----EEEEEESSHHHHH
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhc----CCeEEEEEeecCCCCC----EEEEEECCHHHHH
Confidence 346899999999999999999999999 9999995 88886544 3999999998774
No 357
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.67 E-value=7.9e-09 Score=81.70 Aligned_cols=51 Identities=22% Similarity=0.214 Sum_probs=44.8
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++|||+|||+.+++++|+++|++| .|..|+|. .++|||||+|.+.++|.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-----~v~~~~i~------~~~g~afV~f~~~~~a~ 54 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-----DLKYCYVD------RNKRTAFVTLLNGEQAQ 54 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-----CCCCEEEE------GGGTEEEECCSCHHHHH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-----CeEEEEEe------CCCcEEEEEECCHHHHH
Confidence 35899999999999999999999998 37788884 57899999999998874
No 358
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.67 E-value=1.7e-08 Score=90.23 Aligned_cols=53 Identities=15% Similarity=0.135 Sum_probs=47.4
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+|||+||++.+|+++|+++|+.| |.|..|+|+.+ .++|||||+|.+.++|.
T Consensus 46 vl~l~VgNL~~~vted~L~~~Fs~f----G~V~~V~i~~k----~~rgfAFVeF~d~~~A~ 98 (164)
T 1sjr_A 46 VLRIIVENLFYPVTLDVLHQIFSKF----GTVLKIITFTK----NNQFQALLQYADPVSAQ 98 (164)
T ss_dssp EEEEEECSCCSCCCHHHHHHHHHHH----SCEEEEEEEES----SSCEEEEEEESCHHHHH
T ss_pred eEEEEEeCcCCCCCHHHHHHHHHhc----CCEEEEEEEeC----CCCCEEEEEECCHHHHH
Confidence 4678999999999999999999999 99999999754 25899999999998875
No 359
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.65 E-value=7e-08 Score=77.84 Aligned_cols=73 Identities=19% Similarity=0.264 Sum_probs=61.4
Q ss_pred CccCEEEEecCCC----CCcH----HHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCH
Q 015974 223 KLLRTIFVGNLPL----KVKK----KTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSE 294 (397)
Q Consensus 223 ~~~rtVFVgNLp~----~~Te----e~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~ 294 (397)
.+..||+|.-+|. .+-. .+|...|+.||.|..+++.. +.+||+|.+.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~-------------------------d~~fVtF~d~ 59 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVE-------------------------DKMWVTFLEG 59 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECS-------------------------SSEEEEESSH
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEec-------------------------CCEEEEECCh
Confidence 3457899988873 2333 67899999999999999844 3599999999
Q ss_pred HHHHHHHHhcCceecceeeEEecCCC
Q 015974 295 QSTEAALAFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 295 e~A~~Al~lng~~l~Gr~I~V~~a~~ 320 (397)
++|.+||.|||..+.||.|+|..+.+
T Consensus 60 ~sAlaAi~mnG~~v~Gr~LkV~lkt~ 85 (91)
T 2dnr_A 60 SSALNVLSLNGKELLNRTITIALKSP 85 (91)
T ss_dssp HHHHHGGGGTTCEETTEEEEEEECCC
T ss_pred HHHHHHHhcCCeEeCCeEEEEEeCCC
Confidence 99999999999999999999999874
No 360
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.63 E-value=3.4e-08 Score=79.27 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=45.3
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|| .+++++|+++|+.| |.|..|.|. .++|||||+|.+.++|.
T Consensus 13 ~~~~~l~V~n~--~~t~~~l~~~F~~~----G~i~~v~i~------~~~g~afV~f~~~~~a~ 63 (97)
T 1x5p_A 13 RKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMD------PPRNCAFVTYEKMESAD 63 (97)
T ss_dssp CCCSEEEEECS--SCCHHHHHHHHTTT----SCEEEEEEE------TTTTEEEEEESSHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHhhC----CCEEEEEec------CCCCEEEEEECCHHHHH
Confidence 35689999996 89999999999999 999999984 56899999999988874
No 361
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=9.7e-08 Score=81.15 Aligned_cols=73 Identities=11% Similarity=0.037 Sum_probs=61.3
Q ss_pred ccCEEEEecCCCC-CcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecC-HHHHHHHH
Q 015974 224 LLRTIFVGNLPLK-VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS-EQSTEAAL 301 (397)
Q Consensus 224 ~~rtVFVgNLp~~-~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s-~e~A~~Al 301 (397)
..+.|||+||++. ++.++|+++|+.||.|..|.+..+. -.|||.|.+ +.+|..|+
T Consensus 17 ~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~-----------------------~tgfVrf~~~~~~A~~av 73 (121)
T 1owx_A 17 IGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGA-----------------------KEGIILFKEKAKEALGKA 73 (121)
T ss_dssp CCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTC-----------------------SEEEEEESSCHHHHHHHH
T ss_pred CCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----------------------CEEEEEECCChHHHHHHH
Confidence 3688999999999 9999999999999999999884432 269999999 78888888
Q ss_pred -Hh--cCceecceeeEEecCC
Q 015974 302 -AF--NMAVIGGNHIRLDRAC 319 (397)
Q Consensus 302 -~l--ng~~l~Gr~I~V~~a~ 319 (397)
.+ ++..|.|..+.+....
T Consensus 74 ~~ln~~~~~i~g~~~~~evL~ 94 (121)
T 1owx_A 74 KDANNGNLQLRNKEVTWEVLE 94 (121)
T ss_dssp HHTTTSCBCTTSSSEEEEECC
T ss_pred HHhhcCCcEEeCcEEEEEECC
Confidence 56 4778888888887653
No 362
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.61 E-value=2.7e-08 Score=85.66 Aligned_cols=52 Identities=15% Similarity=0.193 Sum_probs=46.2
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccE-EEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI-AYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGf-AFV~F~s~e~A~ 396 (397)
-..|||+||++.+|+++|+++|+.| |.|..|+|+.. .+|| |||+|.+.++|.
T Consensus 28 VL~I~V~NL~~~vte~~L~~lFs~y----G~V~~V~i~~~-----~~gfqAFVef~~~~~A~ 80 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLHQIFSKF----GTVLKIITFTK-----NNQFQALLQYADPVSAQ 80 (130)
T ss_dssp EEEEEEESCCSCCCHHHHHHHHTTS----SCEEEEEEEEE-----TTEEEEEEEESCHHHHH
T ss_pred eEEEEECCCCCCCCHHHHHHHHhCc----CCEEEEEEEcC-----CCCcEEEEEECCHHHHH
Confidence 4678899999999999999999999 99999998765 3677 999999998874
No 363
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.57 E-value=6.4e-08 Score=82.54 Aligned_cols=50 Identities=16% Similarity=0.245 Sum_probs=43.9
Q ss_pred cceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccE-EEEEeccccccc
Q 015974 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGI-AYVLFKTRDNWI 396 (397)
Q Consensus 337 ~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGf-AFV~F~s~e~A~ 396 (397)
..|||+||++.+++++|+++|+.| |.|..|+|+.. .|| |||+|.+.++|.
T Consensus 26 l~l~V~NL~~~vt~~~L~~~Fs~y----G~V~~v~i~~~------~Gf~aFVef~~~~~A~ 76 (124)
T 2e5i_A 26 LLLSIQNPLYPITVDVLYTVCNPV----GKVQRIVIFKR------NGIQAMVEFESVLCAQ 76 (124)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTT----SCEEEEEEEES------SSEEEEEEESSHHHHH
T ss_pred EEEEEcCcCCCCCHHHHHHHHHhc----CCEEEEEEEeC------CCCEEEEEECCHHHHH
Confidence 456899999999999999999999 99999999653 276 999999988774
No 364
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.57 E-value=6.7e-08 Score=79.76 Aligned_cols=59 Identities=14% Similarity=0.050 Sum_probs=50.1
Q ss_pred ccccceecCCCCc-----cCcHHHHHHHhccCCCCCCCeEEEEEeeCCCC-CCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPF-----DVKDEEIYQLFCGLNDLESSVEAVRVIRHPHM-RVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~-----~vteedL~~~F~~f~~~~G~I~~Vri~rd~~t-g~~kGfAFV~F~s~e~A~ 396 (397)
.++++|+|.||.. +-++++|+++|++| |.|..|.|++++.+ +.++|||||.|.+.++|.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~----G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~ 70 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKY----GKVGKCVIFEIPGAPDDEAVRIFLEFERVESAI 70 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGG----SCEEEEEEEECSSCCTTTSEEEEEEESSHHHHH
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhc----CCEEEEEEecCCCCCCCCcEEEEEEECCHHHHH
Confidence 4578999999962 23789999999999 99999999998754 688999999999998875
No 365
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=98.53 E-value=5.2e-08 Score=92.17 Aligned_cols=54 Identities=24% Similarity=0.400 Sum_probs=48.4
Q ss_pred cccccceecCCCCccC---------cHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDV---------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~v---------teedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
....++|||+||+..+ ++++|+.+|++| |.|..|+|+. ++|||||+|.+.++|+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~f----G~I~~v~v~~------~kG~AFV~F~~~~~Ae 193 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRL----GDIDRIRYVE------SKNCGFVKFKYQANAE 193 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTT----SCEEEEEEEG------GGTEEEEEESSHHHHH
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHcc----CCEEEEEEEC------CCCEEEEEeCCHHHHH
Confidence 4457899999999998 799999999999 9999999985 4899999999998874
No 366
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.52 E-value=5.7e-08 Score=79.08 Aligned_cols=50 Identities=20% Similarity=0.171 Sum_probs=41.5
Q ss_pred ccccc-eecCCCCccCcHHH----HHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKT-VFVGNLPFDVKDEE----IYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~t-LfVgNLp~~vteed----L~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
+++.+ |||+|||+.+++++ |+++|++|| |.|..| ++ |||||.|.+.++|.
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yG---G~Vl~V-------tg---G~AfV~F~~~esA~ 60 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCG---GKVLSI-------TG---CSAILRFINQDSAE 60 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTT---CCEEEC-------CT---TCEEEEESSHHHHH
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcC---CeeEEE-------ec---CEEEEEECCHHHHH
Confidence 34555 99999999999888 668999992 389988 34 99999999999885
No 367
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.48 E-value=6.2e-08 Score=81.73 Aligned_cols=51 Identities=12% Similarity=0.150 Sum_probs=45.1
Q ss_pred ccccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.++|||+|| .+++++|+.+|+.| |.|..|.|+ .++|||||+|.+.++|.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~----G~I~~v~i~------~~kg~aFV~f~~~~~A~ 87 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPF----GNIIDLSMD------PPRNCAFVTYEKMESAD 87 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTT----CCCSCEEEE------TTTTEEEEECSSHHHHH
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHcc----CCEEEEEEe------CCCCEEEEEECCHHHHH
Confidence 45689999996 69999999999999 999999985 46899999999988774
No 368
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=98.41 E-value=1.1e-07 Score=94.51 Aligned_cols=54 Identities=15% Similarity=0.196 Sum_probs=47.4
Q ss_pred cccccceecCC--CCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGN--LPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgN--Lp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++.+|||+| |++.+|+++|+++|++| |.|..|.|++ +||||||+|.+.++|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~----G~V~~v~~~~------~kgfaFV~f~~~~~A~ 70 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKC----GLVDALLMPP------NKPYSFARYRTTEESK 70 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTT----SCEEEEECCT------TCSEEEEEESSHHHHH
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhc----CCeEEEEEeC------CCCEEEEEECCHHHHH
Confidence 45678999999 57899999999999999 9999988753 4799999999998885
No 369
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.39 E-value=5.2e-07 Score=83.01 Aligned_cols=70 Identities=19% Similarity=0.178 Sum_probs=58.9
Q ss_pred CcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-HhcCceecceeeEE
Q 015974 237 VKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFNMAVIGGNHIRL 315 (397)
Q Consensus 237 ~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~lng~~l~Gr~I~V 315 (397)
-.+++|...|++||.|.+|.|++.... +. .++.++|++||+|.+.++|.+|+ .|||..|.||.|.|
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~--~~-----------~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~ 207 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQG--EE-----------EDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVA 207 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECC--SS-----------TTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEE
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCC--cc-----------cCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEE
Confidence 357899999999999999999765421 11 24467899999999999999999 69999999999999
Q ss_pred ecCC
Q 015974 316 DRAC 319 (397)
Q Consensus 316 ~~a~ 319 (397)
.++.
T Consensus 208 ~~~~ 211 (222)
T 3dxb_A 208 EVYD 211 (222)
T ss_dssp EECC
T ss_pred EEcC
Confidence 9874
No 370
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.38 E-value=4.3e-07 Score=73.66 Aligned_cols=72 Identities=18% Similarity=0.240 Sum_probs=60.5
Q ss_pred CccCEEEEecCCCC-----CcH----HHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecC
Q 015974 223 KLLRTIFVGNLPLK-----VKK----KTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKS 293 (397)
Q Consensus 223 ~~~rtVFVgNLp~~-----~Te----e~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s 293 (397)
.+..||+|.-++.. +-. .+|.+.|+.||.|..++|..+ -+||+|.+
T Consensus 13 PpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d-------------------------~~fVtF~d 67 (95)
T 1ufw_A 13 PLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQG-------------------------QMLVTFAD 67 (95)
T ss_dssp CTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETT-------------------------EEEEECSC
T ss_pred CCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecC-------------------------cEEEEEcC
Confidence 44678999998743 222 568899999999999998543 39999999
Q ss_pred HHHHHHHHHhcCceecceeeEEecCC
Q 015974 294 EQSTEAALAFNMAVIGGNHIRLDRAC 319 (397)
Q Consensus 294 ~e~A~~Al~lng~~l~Gr~I~V~~a~ 319 (397)
.++|.+||.|||..+.||.|+|..-.
T Consensus 68 ~~sAl~AI~ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 68 SHSALSVLDVDGMKVKGRAVKISGPS 93 (95)
T ss_dssp SHHHHHHHHGGGSEETTEEEEEECCC
T ss_pred hHHHHHHHhcCCeeeCCeEEEEeccC
Confidence 99999999999999999999998754
No 371
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.22 E-value=7.3e-07 Score=73.43 Aligned_cols=58 Identities=16% Similarity=0.170 Sum_probs=48.1
Q ss_pred cccceecCCC--CccC--------cHHHHHHHhccCCCCCCCeEEEEEeeCCCC--CCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNL--PFDV--------KDEEIYQLFCGLNDLESSVEAVRVIRHPHM--RVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNL--p~~v--------teedL~~~F~~f~~~~G~I~~Vri~rd~~t--g~~kGfAFV~F~s~e~A~ 396 (397)
++++|.|.|| |..+ ..++|++.|++| |.|..|.|+++..+ +.++|||||.|.+.++|.
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~----G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~ 73 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKY----GLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQ 73 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTT----SCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHH
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHcc----CCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHH
Confidence 5688999998 3333 347999999999 99999999998754 368999999999998875
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.21 E-value=2e-06 Score=70.43 Aligned_cols=42 Identities=17% Similarity=0.066 Sum_probs=37.8
Q ss_pred ccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 346 FDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 346 ~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..+++++|+++|++| |.|..|+|+ +.++|||||+|.+.++|.
T Consensus 27 ~~~te~~L~~~F~~~----G~V~~v~i~-----~~~rGfaFVeF~~~~~A~ 68 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKY----GEVLNLVLS-----SKKPGTAVVEFATVKAAE 68 (100)
T ss_dssp CSCCHHHHHHHHHTT----SCEEEEEEE-----SSSSSEEEEEESCHHHHH
T ss_pred CCCCHHHHHHHHHhc----CCEEEEEEc-----cCCCCEEEEEECCHHHHH
Confidence 568999999999999 999999997 368999999999988874
No 373
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.21 E-value=3.1e-07 Score=75.48 Aligned_cols=52 Identities=21% Similarity=0.203 Sum_probs=44.2
Q ss_pred ecCCCCccCcHHHHHHHh------------ccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 340 FVGNLPFDVKDEEIYQLF------------CGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 340 fVgNLp~~vteedL~~~F------------~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.|||+.+++++|+++| ++| |.|..|.|+++.. +.++|||||.|.+.++|.
T Consensus 19 ~~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~----G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~ 82 (104)
T 1jmt_A 19 SADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKY----GEVEEMNVCDNLG-DHLVGNVYVKFRREEDAE 82 (104)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CCEEEEEECCSSS-SSSEEEEEEEESCHHHHH
T ss_pred ccCCcccccCHHHHHHHHHHHHHHHHHHhhccC----CceEEEEEEeCCC-CCccEEEEEEECCHHHHH
Confidence 367888888888887777 999 9999999999864 889999999999998875
No 374
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.16 E-value=9.9e-07 Score=74.37 Aligned_cols=58 Identities=12% Similarity=0.066 Sum_probs=48.1
Q ss_pred cccceecCCCC--ccC---cHHHHHHHhccCCCCCCCeEEEEEeeCCC----CCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLP--FDV---KDEEIYQLFCGLNDLESSVEAVRVIRHPH----MRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp--~~v---teedL~~~F~~f~~~~G~I~~Vri~rd~~----tg~~kGfAFV~F~s~e~A~ 396 (397)
++++|+|.||- ..+ -+++|++.|++| |.|..|.|+++.. ++.++|||||.|.+.++|.
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~----G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~ 85 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKF----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETH 85 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTT----SCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhcc----CCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHH
Confidence 57899999983 222 368999999999 9999999999864 4567899999999998874
No 375
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.15 E-value=1.4e-06 Score=71.85 Aligned_cols=56 Identities=13% Similarity=0.161 Sum_probs=45.0
Q ss_pred cccccceecCCCCccC-----------cHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPFDV-----------KDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~v-----------teedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++++|+|.||.... ++++|+++|++| |.|..|.| .+. .++|||||+|.+.++|.
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~----G~v~~v~i-~~~---~~~G~afV~f~~~~~A~ 78 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKF----GQIRKLLL-FDR---HPDGVASVSFRDPEEAD 78 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGT----SCCSEEEE-ETT---CTTCEEEEECSCHHHHH
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHcc----CCEeEEEE-ecC---CCCEEEEEEECCHHHHH
Confidence 3457899999994332 268999999999 99999966 553 38999999999998874
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.03 E-value=2.9e-06 Score=72.06 Aligned_cols=53 Identities=17% Similarity=0.155 Sum_probs=47.2
Q ss_pred cccccceecCCCCcc-CcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEecc-cccc
Q 015974 333 YDIKKTVFVGNLPFD-VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKT-RDNW 395 (397)
Q Consensus 333 ~~~~~tLfVgNLp~~-vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s-~e~A 395 (397)
..+.+.|||+||+.. ++.++|+++|+.| |.|.+|.|.++.. .|||.|.+ ..+|
T Consensus 15 ~~~G~il~v~~l~~~~~sredLke~F~~~----G~V~~Vd~~~g~~------tgfVrf~~~~~~A 69 (121)
T 1owx_A 15 EKIGCLLKFSGDLDDQTCREDLHILFSNH----GEIKWIDFVRGAK------EGIILFKEKAKEA 69 (121)
T ss_dssp CCCCCEEEEEESCCSSCCHHHHHHHTCSS----CCEEEEECCTTCS------EEEEEESSCHHHH
T ss_pred ccCCeEEEEecCCCCcCCHHHHHHHHHhc----CCEEEEEEecCCC------EEEEEECCChHHH
Confidence 556789999999999 9999999999999 9999999988865 59999999 5555
No 377
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=97.93 E-value=3.2e-05 Score=64.25 Aligned_cols=71 Identities=20% Similarity=0.144 Sum_probs=63.2
Q ss_pred cCEEEEecCCCCCcHHHHHHHhccc-----CCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHH
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKF-----GEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEA 299 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~-----G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~ 299 (397)
.++|=+-|||-.++...|+.+...+ |.|..|.++.+ .|-|+|+|.+...|-+
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pD-----------------------H~GAivef~d~~~AgK 77 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSD-----------------------FNGAIIIFRDSKFAAK 77 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETT-----------------------TTEEEEECSCHHHHHH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecC-----------------------CCceEEEEccchhhHH
Confidence 5889999999999999999999999 99998888443 2569999999999888
Q ss_pred HH-HhcCceecceeeEEecC
Q 015974 300 AL-AFNMAVIGGNHIRLDRA 318 (397)
Q Consensus 300 Al-~lng~~l~Gr~I~V~~a 318 (397)
|. .|+|..|.|+.|+|...
T Consensus 78 asLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 78 MLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp HHHHHSSEEETTEEEEEECH
T ss_pred HHhhcCCeeecCeEEEecCH
Confidence 76 99999999999999764
No 378
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.85 E-value=0.00012 Score=60.19 Aligned_cols=88 Identities=20% Similarity=0.183 Sum_probs=72.6
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcc-----cCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHH
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIK-----FGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~-----~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~ 298 (397)
...+|.|.|||..+.++.|.-+|.. -|.|.+|.... +-|+|+|.+...|+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-------------------------~~AvItF~d~~va~ 61 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-------------------------CGGVLTFREPADAE 61 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-------------------------TEEEEEESSHHHHH
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-------------------------CcEEEEEcChHHHH
Confidence 3578999999999999999999986 36788776511 36999999999999
Q ss_pred HHHHhcCceecceeeEEecCCCCccccCCCCCCccccccceecCCCCccCc
Q 015974 299 AALAFNMAVIGGNHIRLDRACPPRKKLKGEDAPLYDIKKTVFVGNLPFDVK 349 (397)
Q Consensus 299 ~Al~lng~~l~Gr~I~V~~a~~~~k~~~~~~~~~~~~~~tLfVgNLp~~vt 349 (397)
..|+...+.|.|..|.|....+. ...+|++.+|++.++
T Consensus 62 rVL~k~~H~L~~~~LsV~P~~~~-------------~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 62 RVLAQADHELHGAQLSLRPAPPR-------------APARLLLQGLPPGTS 99 (104)
T ss_dssp HHHTCSCCBSSSSBCEEEECCCC-------------CCCCCCCCSCCCCCC
T ss_pred HHhcCCcceecCeEEEEEcCCCC-------------CcceEeeecCCCCCC
Confidence 99988788899999999876542 237899999998775
No 379
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=97.38 E-value=0.0001 Score=61.63 Aligned_cols=54 Identities=13% Similarity=0.099 Sum_probs=42.5
Q ss_pred cccceecCCCCc--c--------CcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPF--D--------VKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~--~--------vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
++++|.|.||=. . --+++|++.|++| |.|..|.|+++. ++|||||.|.+.++|.
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kf----G~V~~v~i~~~~----~~G~~fV~f~~~e~A~ 69 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKH----GGVIHIYVDKNS----AQGNVYVKCPSIAAAI 69 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTT----TCCSEEEECTTC----TTCCEEEECSSHHHHH
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhcc----CCEEEEEEecCC----CcEEEEEEECCHHHHH
Confidence 467788888721 1 1356889999999 999999997763 5999999999998874
No 380
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.09 E-value=0.0016 Score=52.99 Aligned_cols=55 Identities=20% Similarity=0.320 Sum_probs=46.0
Q ss_pred CCccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH
Q 015974 222 GKLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL 301 (397)
Q Consensus 222 ~~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al 301 (397)
....+.++| ++|..+...+|..+|+.||.|. |+++-+. .|||.|.+++.|..||
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT------------------------sAlvvf~~~~~a~~al 66 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT------------------------SAFVSLSQPEQVQIAV 66 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT------------------------EEEEECSCHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC------------------------eEEEEecCHHHHHHHH
Confidence 344566777 9999999999999999999765 7775542 7999999999999998
Q ss_pred H
Q 015974 302 A 302 (397)
Q Consensus 302 ~ 302 (397)
.
T Consensus 67 ~ 67 (100)
T 1whv_A 67 N 67 (100)
T ss_dssp H
T ss_pred H
Confidence 5
No 381
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=96.89 E-value=0.006 Score=50.10 Aligned_cols=74 Identities=12% Similarity=0.040 Sum_probs=60.5
Q ss_pred ccCEEEEecCCCCC-c----HHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHH
Q 015974 224 LLRTIFVGNLPLKV-K----KKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTE 298 (397)
Q Consensus 224 ~~rtVFVgNLp~~~-T----ee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~ 298 (397)
..++|+|.||+..+ + .+.++.+|..|+++....+.. |-.-..|.|.++++|.
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lk-----------------------SFRRirv~F~~~~~A~ 60 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFK-----------------------SFKRVRINFSNPLSAA 60 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEET-----------------------TTTEEEEECSSTTHHH
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecC-----------------------cceEEEEEeCChHHHH
Confidence 36889999999875 2 367899999999988765522 1125799999999999
Q ss_pred HHH-HhcCceecceeeEEecCCC
Q 015974 299 AAL-AFNMAVIGGNHIRLDRACP 320 (397)
Q Consensus 299 ~Al-~lng~~l~Gr~I~V~~a~~ 320 (397)
+|- .|++..|.|+.|+|..+.+
T Consensus 61 ~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 61 DARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp HHHHTSTTSEETTEECEEECCCC
T ss_pred HHHHHhccceecCceeEEEecCC
Confidence 986 7999999999999999874
No 382
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=96.82 E-value=0.0052 Score=51.70 Aligned_cols=72 Identities=15% Similarity=0.160 Sum_probs=58.2
Q ss_pred ccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHh
Q 015974 224 LLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAF 303 (397)
Q Consensus 224 ~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~l 303 (397)
..+.|-|-+.|+.. ...|..+|++||.|.+.... . ...+-.|.|.+..+|++||..
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~------~-----------------~~NWihI~Y~s~~~A~rAL~k 78 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMS------N-----------------TGNWMHIRYQSKLQARKALSK 78 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEEC------S-----------------SSSEEEEEESSHHHHHHHHTT
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccC------C-----------------CCCeEEEEeCCHHHHHHHHHh
Confidence 36789999999986 56677899999999887651 1 124899999999999999999
Q ss_pred cCceecc-eeeEEecCC
Q 015974 304 NMAVIGG-NHIRLDRAC 319 (397)
Q Consensus 304 ng~~l~G-r~I~V~~a~ 319 (397)
||..|.| ..|-|.+..
T Consensus 79 NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 79 DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp TTCEETTTEECEEEECC
T ss_pred CCeEecCCEEEEEEECC
Confidence 9999985 667777764
No 383
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.46 E-value=0.0024 Score=52.01 Aligned_cols=51 Identities=20% Similarity=0.371 Sum_probs=43.0
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
+.++| ++|..+...+|..+|+.||.|. |+++-+ ..|||.|.+++.|..||.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidD------------------------TsAlvvf~~~~~a~~al~ 57 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDD------------------------TSAFVSLSQPEQVKIAVN 57 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEET------------------------TEEEEEEEEECHHHHHHH
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcC------------------------CeEEEEecCHHHHHHHHH
Confidence 44566 9999999999999999999554 777554 279999999999999985
No 384
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=96.38 E-value=0.016 Score=46.40 Aligned_cols=70 Identities=21% Similarity=0.230 Sum_probs=51.9
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hhc
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AFN 304 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~ln 304 (397)
..|-|++||+.+|++++.+.++.+..+....+..... +..+ ..-+-|||.|.+.+++.... .++
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~--s~~~-------------~~~SRaYi~f~~~e~v~~f~~~~~ 66 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDT--SLYP-------------HMYARAYINFKNQEDIILFRDRFD 66 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCC--SSTT-------------CCCEEEEEEESSSHHHHHHHHHHT
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCcc--CCCC-------------CcceEEEEEeCCHHHHHHHHHHhC
Confidence 4699999999999999999999988766555532221 1111 12367999999999988877 699
Q ss_pred Cceecc
Q 015974 305 MAVIGG 310 (397)
Q Consensus 305 g~~l~G 310 (397)
|..|.+
T Consensus 67 g~~F~D 72 (91)
T 1uw4_A 67 GYVFLD 72 (91)
T ss_dssp TCEEEC
T ss_pred CcEEEc
Confidence 998743
No 385
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=96.25 E-value=0.0035 Score=57.14 Aligned_cols=45 Identities=11% Similarity=-0.012 Sum_probs=38.3
Q ss_pred CcHHHHHHHhccCCCCCCCeEEEEEeeCC----CCCCCccEEEEEeccccccc
Q 015974 348 VKDEEIYQLFCGLNDLESSVEAVRVIRHP----HMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 348 vteedL~~~F~~f~~~~G~I~~Vri~rd~----~tg~~kGfAFV~F~s~e~A~ 396 (397)
-.+++|++.|+.| |.|..|.|+++. .++.++|++||.|.+.++|.
T Consensus 141 e~~~dl~~e~~~~----G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~ 189 (222)
T 3dxb_A 141 DLEGEVTEECGKF----GAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETH 189 (222)
T ss_dssp THHHHHHHHHTTT----SCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHH
T ss_pred HHHHHHHHHHHcc----CCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHH
Confidence 4568999999999 999999998654 34589999999999988774
No 386
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.03 E-value=0.0047 Score=49.56 Aligned_cols=51 Identities=22% Similarity=0.300 Sum_probs=39.4
Q ss_pred ccccceecCCCC----ccCcH----HHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 334 DIKKTVFVGNLP----FDVKD----EEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 334 ~~~~tLfVgNLp----~~vte----edL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
++..||+|..++ .++-. .+|.+.|.+| |.|..|+|+.+. +||+|.+.++|.
T Consensus 5 Ppd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vi~vr~~~d~--------~fVtF~d~~sAl 63 (91)
T 2dnr_A 5 SSGGTVLVSIKSSLPENNFFDDALIDELLQQFASF----GEVILIRFVEDK--------MWVTFLEGSSAL 63 (91)
T ss_dssp CSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTT----CCEEEEEECSSS--------EEEEESSHHHHH
T ss_pred CCCCeEEEEeccCccccccCCHHHHHHHHHHHHhC----CCeEEEEEecCC--------EEEEECChHHHH
Confidence 345677777665 23434 6788999999 999999998873 899999988773
No 387
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=95.14 E-value=0.051 Score=46.39 Aligned_cols=90 Identities=20% Similarity=0.133 Sum_probs=56.3
Q ss_pred CEEEEecCCCCCcHHHHHHHhcccCCeeEE-EEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhc
Q 015974 226 RTIFVGNLPLKVKKKTLIKEFIKFGEIDSV-RIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (397)
Q Consensus 226 rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~I-ri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (397)
..|.|-+.|...+. .|..+|++||.|.+- .+.......+...+ -.+++..-....+..|.|.+..+|.+||..|
T Consensus 8 ~~VtVFGFp~~~~~-~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~----~~k~yP~f~g~NWikItYds~~~A~rAL~~N 82 (132)
T 3p3d_A 8 LAILVFGYPETMAN-QVIAYFQEFGTILEDFEVLRKPQAMTVGLQ----DRQFVPIFSGNSWTKITYDNPASAVDALLEN 82 (132)
T ss_dssp CEEEEECCCGGGHH-HHHHHHGGGSCBCSCCGGGCCC---------------CCCCCEETTEEEEEBSSHHHHHHHHTTT
T ss_pred eEEEEEecCHHHHH-HHHHHHHhhceEeeeccccccccccccccc----cccccCccCCCcEEEEEcCCHHHHHHHHHhC
Confidence 45888899777665 455689999998652 11000000000000 0001110012458899999999999999999
Q ss_pred CceecceeeEEecCCC
Q 015974 305 MAVIGGNHIRLDRACP 320 (397)
Q Consensus 305 g~~l~Gr~I~V~~a~~ 320 (397)
|..|.|..|-|.+..+
T Consensus 83 G~ii~G~mIGV~Py~~ 98 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYTK 98 (132)
T ss_dssp TCEETTEECEEEECCH
T ss_pred CeEeCcEEEEEEECCH
Confidence 9999999888888753
No 388
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=95.11 E-value=0.0078 Score=48.63 Aligned_cols=52 Identities=17% Similarity=0.148 Sum_probs=41.2
Q ss_pred cccccceecCCCCc-----cCcH----HHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 333 YDIKKTVFVGNLPF-----DVKD----EEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 333 ~~~~~tLfVgNLp~-----~vte----edL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.++..||+|..++. .+-. .+|.+.|.+| |.|..|||+.|. +||+|.+.++|.
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~----G~Vilvr~v~d~--------~fVtF~d~~sAl 72 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSY----GTIVLVRINQGQ--------MLVTFADSHSAL 72 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHH----SCCSEEEEETTE--------EEEECSCSHHHH
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHC----CCEEEEEEecCc--------EEEEEcChHHHH
Confidence 34567899988763 2333 5688999999 999999999984 999999988874
No 389
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=94.02 E-value=0.058 Score=43.16 Aligned_cols=56 Identities=16% Similarity=0.243 Sum_probs=44.6
Q ss_pred cceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCC--CCccEEEEEeccccccc
Q 015974 337 KTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR--VGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 337 ~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg--~~kGfAFV~F~s~e~A~ 396 (397)
.+|.|++||+.+|++++.+.++.+ ..+.+..++....+. ..-+-|||.|.+.+++.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~----~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~ 59 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPM----PEHDYFEFFSNDTSLYPHMYARAYINFKNQEDII 59 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSC----CCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHH
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCc----ccceEEEEeCCccCCCCCcceEEEEEeCCHHHHH
Confidence 478999999999999999999998 678888887765322 23467999999987653
No 390
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=93.92 E-value=0.027 Score=57.73 Aligned_cols=58 Identities=19% Similarity=0.247 Sum_probs=41.8
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHHhc
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALAFN 304 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ln 304 (397)
.|+|||. .|..+++.+|.++|++||.|.++.+-.+ ..-||.|+|.+.+++..++...
T Consensus 53 ~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~----------------------~g~~~~vef~~~~~~~~~~~~~ 109 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYES----------------------FGLYAVVEFCQKESIGSLQNGT 109 (464)
T ss_dssp HTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECS----------------------SSEEEEEECC---CCHHHHSSC
T ss_pred cceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEcc----------------------CCeEEEEEeCCHHHHHHHHhcc
Confidence 5889997 7999999999999999999998877221 1149999999999999887543
Q ss_pred C
Q 015974 305 M 305 (397)
Q Consensus 305 g 305 (397)
+
T Consensus 110 ~ 110 (464)
T 3pq1_A 110 H 110 (464)
T ss_dssp C
T ss_pred C
Confidence 3
No 391
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.52 E-value=0.095 Score=42.88 Aligned_cols=52 Identities=19% Similarity=0.082 Sum_probs=42.8
Q ss_pred cccceecCCCCccCcHHHHHHHhcc---CCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCG---LNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~---f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...+|.|.|||..+.++.|.-+|+. -|. |.|..|.... +-|+|+|.+...|+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGG--G~V~~v~~~~--------~~AvItF~d~~va~ 61 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGG--GPVLSWQRLG--------CGGVLTFREPADAE 61 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCC--CCEEEEEEET--------TEEEEEESSHHHHH
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCC--ceeeEEEEcC--------CcEEEEEcChHHHH
Confidence 4579999999999999999999976 233 8999998744 36899999987764
No 392
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=93.43 E-value=0.11 Score=42.10 Aligned_cols=71 Identities=13% Similarity=0.125 Sum_probs=47.6
Q ss_pred cCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHH-Hh
Q 015974 225 LRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAAL-AF 303 (397)
Q Consensus 225 ~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al-~l 303 (397)
+-.|-|+.||+.+|++++.+.++.+=.+ .+.. +.....+.+ ...-.-|||.|.+.+++.... .+
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~---d~~~--fv~G~~s~~----------~~~~SRAYI~F~~~edv~~F~~~f 73 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAH---DYFE--FFAADLSLY----------PHLYSRAYINFRNPDDILLFRDRF 73 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSE---EECC--CCCCCSSSC----------CSCCCCCEEEESCHHHHHHHHHHS
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCcc---ceEE--EeCCccCCC----------CCcceEEEEEeCCHHHHHHHHHHc
Confidence 4569999999999999988777765433 3322 111111110 112357999999999998877 58
Q ss_pred cCceecc
Q 015974 304 NMAVIGG 310 (397)
Q Consensus 304 ng~~l~G 310 (397)
+|..|.+
T Consensus 74 ~g~~F~D 80 (97)
T 2l08_A 74 DGYIFLD 80 (97)
T ss_dssp TTEEEEC
T ss_pred CCcEEEe
Confidence 9988743
No 393
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=93.19 E-value=0.082 Score=42.89 Aligned_cols=48 Identities=21% Similarity=0.431 Sum_probs=38.2
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++| ++|..+.-.||.++|+.| |.| .|+.+-|. -|||.|.+++.|.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~f----ggv-~I~WidDT-------sAlvvf~~~~~a~ 63 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAF----GNI-QISWIDDT-------SAFVSLSQPEQVQ 63 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTT----CSC-CCEEEETT-------EEEEECSCHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhcc----CCE-EEEEEcCC-------eEEEEecCHHHHH
Confidence 456777 999999999999999999 533 35666663 5999999988764
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=91.82 E-value=0.14 Score=41.57 Aligned_cols=48 Identities=21% Similarity=0.368 Sum_probs=39.2
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++| ++|..+.-.||.++|+.| | -..|+.+-|. -|||.|.+++.|.
T Consensus 6 ~HV~~l-~FP~ewKt~Di~~lFs~f----g-gv~I~WidDT-------sAlvvf~~~~~a~ 53 (101)
T 3ctr_A 6 DHVLHV-TFPKEWKTSDLYQLFSAF----G-NIQISWIDDT-------SAFVSLSQPEQVK 53 (101)
T ss_dssp EEEEEE-ECCTTCCHHHHHHHTTTS----E-EEEEEEEETT-------EEEEEEEEECHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHHhcc----C-CEEEEEEcCC-------eEEEEecCHHHHH
Confidence 356777 999999999999999999 6 3457777774 5999999988764
No 395
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=85.81 E-value=1.7 Score=44.78 Aligned_cols=54 Identities=20% Similarity=0.321 Sum_probs=43.4
Q ss_pred CccCEEEEecCCCCCcHHHHHHHhcccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCHHHHHHHHH
Q 015974 223 KLLRTIFVGNLPLKVKKKTLIKEFIKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSEQSTEAALA 302 (397)
Q Consensus 223 ~~~rtVFVgNLp~~~Tee~L~~~Fs~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~e~A~~Al~ 302 (397)
...+.++|+ +|..+...+|..+|+.||.| .|+++.+ ..|||.|.+.+.|..++.
T Consensus 438 ~R~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widd------------------------t~a~V~~~~~~~a~~~l~ 491 (507)
T 3d45_A 438 KRDHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDD------------------------TSAFVSLSQPEQVQIAVN 491 (507)
T ss_dssp CGGGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSS------------------------SEEEEECSCHHHHHHHHH
T ss_pred CcCcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcC------------------------CeEEEEECCHHHHHHHHH
Confidence 345677776 99999999999999999964 4666332 379999999999999883
No 396
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=84.22 E-value=0.52 Score=48.23 Aligned_cols=52 Identities=12% Similarity=0.158 Sum_probs=38.5
Q ss_pred cccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 335 IKKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 335 ~~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
..++|||. +|..+++.+|.++|++| |.|..+.+..+. | -||.|+|.+.+++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~----g~i~~~~~~~~~--g---~~~~vef~~~~~~~ 103 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQF----GPINNHFFYESF--G---LYAVVEFCQKESIG 103 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGG----SCCCCEEEECSS--S---EEEEEECC---CCH
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhc----CCcceEEEEccC--C---eEEEEEeCCHHHHH
Confidence 35899998 78899999999999999 999998876542 2 69999999988764
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=81.66 E-value=0.44 Score=38.51 Aligned_cols=57 Identities=16% Similarity=0.207 Sum_probs=39.4
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCC--CCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMR--VGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg--~~kGfAFV~F~s~e~A~ 396 (397)
+.+|.|+.||+.+|++++.+.++.+ =.+.+..++....+. ..-.-|||.|.+.++..
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~----~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~ 67 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPL----PAHDYFEFFAADLSLYPHLYSRAYINFRNPDDIL 67 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCC----SSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHH
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCc----CccceEEEeCCccCCCCCcceEEEEEeCCHHHHH
Confidence 5689999999999999999888876 234444443332211 12246899999887653
No 398
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=80.23 E-value=1.7 Score=35.98 Aligned_cols=54 Identities=13% Similarity=0.066 Sum_probs=44.3
Q ss_pred ccceecCCCCccCcHHHHHHHhccCC-CCCCCeEEEEEeeCCCCCCCccEEEEEecccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLN-DLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNW 395 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~-~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A 395 (397)
.++|-+-|||-.++...|+.+..++. ...|.|..|.+..|.. -|+|.|.+...|
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~------GAivef~d~~~A 75 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN------GAIIIFRDSKFA 75 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT------EEEEECSCHHHH
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC------ceEEEEccchhh
Confidence 57899999999999999999998861 1126789999988843 599999998765
No 399
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=52.08 E-value=18 Score=30.03 Aligned_cols=50 Identities=10% Similarity=0.005 Sum_probs=39.6
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.+.|.|-+.|... ...|...|..| |.|....... ...+-+|.|.++.+|+
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~----G~Iv~~~~~~------~~NWihI~Y~s~~~A~ 73 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQY----GNILKHVMSN------TGNWMHIRYQSKLQAR 73 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTT----SCEEEEEECS------SSSEEEEEESSHHHHH
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhh----CcEEEeccCC------CCCeEEEEeCCHHHHH
Confidence 5778888999875 66788889999 9999887621 2458999999988874
No 400
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=47.09 E-value=24 Score=28.59 Aligned_cols=51 Identities=12% Similarity=0.024 Sum_probs=36.5
Q ss_pred ccceecCCCCccC-c----HHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDV-K----DEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~v-t----eedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
.++|+|.||+..+ . .+.++++|..| +.+....+.+.- | -..|.|.+.++|.
T Consensus 5 pntLiitnl~~~vF~~~~lk~~~e~Lf~~~----~~~~tF~~lkSF-----R-Rirv~F~~~~~A~ 60 (104)
T 1wey_A 5 SSGLIACVANDDVFSESETRAKFESLFRTY----DKDTTFQYFKSF-----K-RVRINFSNPLSAA 60 (104)
T ss_dssp CCEEEEECCCGGGGSTTTHHHHHHHHHHTT----CSSCEEEEETTT-----T-EEEEECSSTTHHH
T ss_pred CceEEEecCCHHHcCCHHHHHHHHHHHHhh----CcCcceeecCcc-----e-EEEEEeCChHHHH
Confidence 3789999999876 2 25778999999 555555544432 2 4689999998874
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=33.14 E-value=41 Score=34.44 Aligned_cols=48 Identities=21% Similarity=0.412 Sum_probs=36.9
Q ss_pred ccceecCCCCccCcHHHHHHHhccCCCCCCCeEEEEEeeCCCCCCCccEEEEEeccccccc
Q 015974 336 KKTVFVGNLPFDVKDEEIYQLFCGLNDLESSVEAVRVIRHPHMRVGKGIAYVLFKTRDNWI 396 (397)
Q Consensus 336 ~~tLfVgNLp~~vteedL~~~F~~f~~~~G~I~~Vri~rd~~tg~~kGfAFV~F~s~e~A~ 396 (397)
...++|+ +|..|...+|.++|+.| |.| .|+.+.+ ..|||.|.+.+.|.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~f----g~v-~V~widd-------t~a~V~~~~~~~a~ 487 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAF----GNI-QISWIDD-------TSAFVSLSQPEQVQ 487 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGG----CCC-EEEECSS-------SEEEEECSCHHHHH
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhc----CCE-EEEEEcC-------CeEEEEECCHHHHH
Confidence 4566666 88999999999999999 643 4555544 26999999988764
No 402
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=20.30 E-value=1.3e+02 Score=26.35 Aligned_cols=59 Identities=24% Similarity=0.205 Sum_probs=39.1
Q ss_pred CEEEEecCCC-C--------CcHHHHHHHh--cccCCeeEEEEeeecccCCCCCccchhhhhccccCCCcceEEEEecCH
Q 015974 226 RTIFVGNLPL-K--------VKKKTLIKEF--IKFGEIDSVRIRSVPIIDTKIPRKGAILQKQINENADSVHAYIVFKSE 294 (397)
Q Consensus 226 rtVFVgNLp~-~--------~Tee~L~~~F--s~~G~I~~Iri~~~~~~~~~~prk~a~i~~~~~~g~skG~AFV~F~s~ 294 (397)
-++.|-|+|. . .....|.+.| +.|.++. |+.+..+ ..++|+|.|.|.+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~-------------------~Gh~g~aIv~F~~d 72 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNY-------------------LGHSGTAIVEFNKD 72 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECS-------------------SBEEEEEEEECCSS
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccC-------------------CCCceeEEEEecCC
Confidence 3567888887 2 3457899977 8999865 4443321 23679999999986
Q ss_pred HH-HHHHHHhc
Q 015974 295 QS-TEAALAFN 304 (397)
Q Consensus 295 e~-A~~Al~ln 304 (397)
-. -..|+.|.
T Consensus 73 w~Gf~~A~~fe 83 (172)
T 4e8u_A 73 WNGLHNGLLFD 83 (172)
T ss_dssp HHHHHHHHHHH
T ss_pred hHHHHHHHHHH
Confidence 54 44565443
Done!