BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015975
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JK9|B Chain B, Heterodimer Between H48f-Ysod1 And Yccs
pdb|1JK9|D Chain D, Heterodimer Between H48f-Ysod1 And Yccs
Length = 249
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 21 IHCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGSVDSATLIKKLVRAGKHA 74
+HC+ C +K L+ + G+ +N D EQQ ++V SV +T+I L GK A
Sbjct: 15 MHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDA 68
>pdb|1QUP|A Chain A, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
pdb|1QUP|B Chain B, Crystal Structure Of The Copper Chaperone For Superoxide
Dismutase
Length = 222
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 22 HCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGSVDSATLIKKLVRAGKHA 74
HC+ C +K L+ + G+ +N D EQQ +V SV +T+I L GK A
Sbjct: 15 HCENCVNDIKACLKNVPGINSLNFDIEQQIXSVESSVAPSTIINTLRNCGKDA 67
>pdb|3CJK|A Chain A, Crystal Structure Of The Adduct Hah1-Cd(Ii)-Mnk1
Length = 68
Score = 34.7 bits (78), Expect = 0.096, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 17 LKVNIHCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGSVDSATLIKKLVRAGK 72
V++ C GC + V ++L ++ GV + +ID +KV + TL+ L + GK
Sbjct: 5 FSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGK 59
>pdb|1FE4|A Chain A, Crystal Structure Of Mercury-Hah1
pdb|1FE4|B Chain B, Crystal Structure Of Mercury-Hah1
pdb|1FEE|A Chain A, Crystal Structure Of Copper-Hah1
pdb|1FEE|B Chain B, Crystal Structure Of Copper-Hah1
pdb|1FE0|A Chain A, Crystal Structure Of Cadmium-Hah1
pdb|1FE0|B Chain B, Crystal Structure Of Cadmium-Hah1
pdb|1TL4|A Chain A, Solution Structure Of Cu(i) Hah1
pdb|1TL5|A Chain A, Solution Structure Of Apohah1
pdb|2K1R|B Chain B, The Solution Nmr Structure Of The Complex Between Mnk1
And Hah1 Mediated By Cu(I)
pdb|3IWL|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Monomer)
pdb|3IWX|A Chain A, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
pdb|3IWX|B Chain B, Crystal Structure Of Cisplatin Bound To A Human Copper
Chaperone (Dimer)
Length = 68
Score = 34.3 bits (77), Expect = 0.11, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 17 LKVNIHCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGSVDSATLIKKLVRAGK 72
V++ C GC + V ++L ++ GV + +ID +KV + TL+ L + GK
Sbjct: 6 FSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGK 60
>pdb|1OSD|A Chain A, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
pdb|1OSD|B Chain B, Crystal Structure Of Oxidized Merp From Ralstonia
Metallidurans Ch34
Length = 72
Score = 34.3 bits (77), Expect = 0.12, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 13 QTCVLKV-NIHCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGSVDSATLIKKLVRAG 71
QT L V + C C VKK + ++EGV +V++ E ++ V+ D+ T ++KL +A
Sbjct: 3 QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFD-DAKTSVQKLTKAT 61
Query: 72 KHA 74
A
Sbjct: 62 ADA 64
>pdb|1AFI|A Chain A, Structure Of The Reduced Form Of Merp, The Periplasmic
Protein From The Bacterial Mercury Detoxification
System, Nmr, 20 Structures
pdb|1AFJ|A Chain A, Structure Of The Mercury-Bound Form Of Merp, The
Periplasmic Protein From The Bacterial Mercury
Detoxification System, Nmr, 20 Structures
pdb|2HQI|A Chain A, Nmr Solution Structure Of The Oxidized Form Of Merp, 14
Structures
Length = 72
Score = 33.5 bits (75), Expect = 0.19, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 13 QTCVLKV-NIHCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGSVDSATLIKKLVRAG 71
QT L V + C C VKK L ++EGV +V++ E+++ V+ D+ ++KL +A
Sbjct: 3 QTVTLAVPGMTCAACPITVKKALSKVEGVSKVDVGFEKREAVVTFD-DTKASVQKLTKAT 61
Query: 72 KHA 74
A
Sbjct: 62 ADA 64
>pdb|2XMW|A Chain A, Pacs, N-Terminal Domain, From Synechocystis Pcc6803
Length = 71
Score = 32.3 bits (72), Expect = 0.54, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 21 IHCDGCKQKVKKLLQRIEGVY--QVNIDAEQQKVTVSGSVDSATLIKKLVRAGKHAEL 76
+ C C +++ + ++ GV QVN EQ V+ G L + RAG HA +
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV 69
>pdb|4A48|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A48|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A4J|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 69
Score = 32.0 bits (71), Expect = 0.58, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 23 CDGCKQKVKKLLQRIEGVY--QVNIDAEQQKVTVSGSVDSATLIKKLVRAGKHAEL 76
C C +++ + ++ GV QVN EQ V+ G L + RAG HA +
Sbjct: 13 CTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV 68
>pdb|4A46|A Chain A, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|B Chain B, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|C Chain C, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
pdb|4A46|D Chain D, Crosstalk Between Cu(I) And Zn(Ii) Homeostasis
Length = 63
Score = 31.6 bits (70), Expect = 0.73, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 21 IHCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGSVDSATLIKKLVRAGKHAE 75
I C+ C + V K +Q + V +D +KVT++ ++ L + AG E
Sbjct: 9 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE 63
>pdb|2GCF|A Chain A, Solution Structure Of The N-Terminal Domain Of The
Coppper(I) Atpase Pacs In Its Apo Form
Length = 73
Score = 31.6 bits (70), Expect = 0.73, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 21 IHCDGCKQKVKKLLQRIEGVY--QVNIDAEQQKVTVSGSVDSATLIKKLVRAGKHAEL 76
+ C C +++ + ++ GV QVN EQ V+ G L + RAG HA +
Sbjct: 12 MRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV 69
>pdb|1SB6|A Chain A, Solution Structure Of A Cyanobacterial Copper
Metallochaperone, Scatx1
pdb|2XMT|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMT|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1
Form)
pdb|2XMU|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMU|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu2
Form)
pdb|2XMJ|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMJ|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites:atx1 Side-To-Side (Aerobic)
pdb|2XMK|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
pdb|2XMK|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: Atx1 Side-To-Side (Anaerobic)
Length = 64
Score = 31.6 bits (70), Expect = 0.76, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 21 IHCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGSVDSATLIKKLVRAGKHAE 75
I C+ C + V K +Q + V +D +KVT++ ++ L + AG E
Sbjct: 10 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE 64
>pdb|2XMV|A Chain A, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|B Chain B, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|C Chain C, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|D Chain D, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|E Chain E, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMV|F Chain F, Copper Chaperone Atx1 From Synechocystis Pcc6803 (Cu1,
Trimeric Form, His61tyr Mutant)
pdb|2XMM|A Chain A, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
pdb|2XMM|B Chain B, Visualising The Metal-Binding Versatility Of Copper
Trafficking Sites: H61y Atx1 Side-To-Side
Length = 64
Score = 31.2 bits (69), Expect = 0.94, Method: Composition-based stats.
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 21 IHCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGSVDSATLIKKLVRAGKHAE 75
I C+ C + V K +Q + V +D +KVT++ ++ L + AG E
Sbjct: 10 IACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEVE 64
>pdb|2OFH|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 23 CDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVS 55
C CK K++ L+R++GV + ++ ++TV+
Sbjct: 19 CTSCKLKIEGSLERLKGVAEASVTVATGRLTVT 51
>pdb|2OFG|X Chain X, Solution Structure Of The N-Terminal Domain Of The
Zinc(Ii) Atpase Ziaa In Its Apo Form
Length = 111
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 23 CDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVS 55
C CK K++ L+R++GV + ++ ++TV+
Sbjct: 14 CTSCKLKIEGSLERLKGVAEASVTVATGRLTVT 46
>pdb|2AJ0|A Chain A, Solution Structure Of Apocada
pdb|2AJ1|A Chain A, Solution Structure Of Apocada
Length = 71
Score = 28.5 bits (62), Expect = 7.3, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 21 IHCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGSVDSATLIKKLVRAGKHAEL 76
+ C C K ++ ++ IEGV + ++ K+TV+G I+++ +AG L
Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS----IQQVEQAGAFEHL 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,814,190
Number of Sequences: 62578
Number of extensions: 236939
Number of successful extensions: 489
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 478
Number of HSP's gapped (non-prelim): 21
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)