BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015975
         (397 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
          OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
          Length = 153

 Score = 54.7 bits (130), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 45/68 (66%), Gaps = 1/68 (1%)

Query: 11 KIQTCVLKVNIHCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGSVDSATLIKKLV-R 69
          ++QT  +KV + C+GC++KV++ ++ ++GV  V ++ +  KVTV G VD   ++ ++  R
Sbjct: 24 QLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVARMSHR 83

Query: 70 AGKHAELW 77
           GK  ELW
Sbjct: 84 TGKKVELW 91


>sp|Q75DD6|CCS1_ASHGO Superoxide dismutase 1 copper chaperone OS=Ashbya gossypii (strain
           ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
           GN=CCS1 PE=3 SV=1
          Length = 238

 Score = 44.7 bits (104), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 23/101 (22%), Positives = 47/101 (46%), Gaps = 3/101 (2%)

Query: 19  VNIHCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGSVDSATLIKKLVRAGKHAELWS 78
           V +HC  C  ++ + L+ + GV +V  D E+Q V V G    +++++ L   G+ A L  
Sbjct: 14  VPMHCGDCTGEISRALRAVPGVQEVTPDLERQLVAVRGIAPPSSIVQALAATGRDAIL-- 71

Query: 79  QKSNQNQNQKNNCIKDDKNNNKGQKQGLMKGFEPLKNQQKF 119
            + +   +     I +  +      +GL++  +   N+  F
Sbjct: 72  -RGSGEPDSAAVAILESASAGGPPVRGLVRAVQVAPNKTLF 111


>sp|P40202|CCS1_YEAST Superoxide dismutase 1 copper chaperone OS=Saccharomyces
          cerevisiae (strain ATCC 204508 / S288c) GN=CCS1 PE=1
          SV=1
          Length = 249

 Score = 44.3 bits (103), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 32/56 (57%)

Query: 19 VNIHCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGSVDSATLIKKLVRAGKHA 74
          + +HC+ C   +K  L+ + G+  +N D EQQ ++V  SV  +T+I  L   GK A
Sbjct: 13 IPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDA 68


>sp|Q8ZCA7|COPA_YERPE Copper-exporting P-type ATPase A OS=Yersinia pestis GN=copA PE=3
           SV=1
          Length = 961

 Score = 39.3 bits (90), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 26/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)

Query: 16  VLKVNIHCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGSVDSATLIKKLVRAGKHAE 75
           +L   + C  C  KV+  LQR++GV    ++  ++   V+G+ ++  LI  +  AG  AE
Sbjct: 230 LLLTGMSCASCVSKVQNALQRVDGVQVARVNLAERSALVTGTQNNEALIAAVKNAGYGAE 289

Query: 76  LWSQKSNQNQNQKNNCIKDDKNNNKGQKQGLMKGFEPLKNQQKF 119
           +   +  + + Q+       K        GL+ G  PL     F
Sbjct: 290 IIEDEGERRERQQQMSQASMKRFQWQAALGLLLGI-PLMAWGLF 332



 Score = 35.0 bits (79), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 21  IHCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGSVDSATLIKKLVRAGKHA 74
           + C  C + V+K L+ + GV  ++ D   +   V G  D  TLI  + +AG HA
Sbjct: 78  LSCGHCTETVRKALEAVSGV--ISADVTLESANVYGKADIQTLIAAVEQAGYHA 129



 Score = 33.1 bits (74), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 12 IQTCVLKVN-IHCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGSVDSATLIKKLVRA 70
          +QT +L +  + C  C Q+VK  L+  E V+   ++    KVT  G  D+  LI+ + + 
Sbjct: 2  LQTTLLALQGLSCMNCAQRVKAALESREDVHHAEVNVHYAKVT--GEADTHALIETIKQT 59

Query: 71 GKHA 74
          G  A
Sbjct: 60 GYQA 63


>sp|Q54PZ2|ATOX1_DICDI Copper transport protein ATOX1 homolog OS=Dictyostelium
          discoideum GN=atox1 PE=3 SV=2
          Length = 67

 Score = 38.5 bits (88), Expect = 0.086,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 1/59 (1%)

Query: 19 VNIHCDGCKQKVKKLLQRIEGVYQVNIDAEQQKVTVSGS-VDSATLIKKLVRAGKHAEL 76
          V++ C GC + V  +L +I+GV  + ID E +KV+   S + +  L+K + + GK   +
Sbjct: 7  VDMTCGGCSKAVNAILSKIDGVSNIQIDLENKKVSCESSKMGADELLKNIQKTGKKCSI 65


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.311    0.127    0.367 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 161,545,827
Number of Sequences: 539616
Number of extensions: 7779660
Number of successful extensions: 89337
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 243
Number of HSP's successfully gapped in prelim test: 633
Number of HSP's that attempted gapping in prelim test: 46780
Number of HSP's gapped (non-prelim): 22382
length of query: 397
length of database: 191,569,459
effective HSP length: 120
effective length of query: 277
effective length of database: 126,815,539
effective search space: 35127904303
effective search space used: 35127904303
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 62 (28.5 bits)