BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015980
         (397 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
           Free-electron Laser Pulse Data By Serial Femtosecond
           X-ray Crystallography
          Length = 340

 Score = 32.3 bits (72), Expect = 0.43,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 318 EDDVPYGYGFFHFVFATGAMYFAMLLIGWNTHHTIRKWTIDVGWTSTW 365
           ED + Y  G +H V        A+ L+GW T + +  W I   W + W
Sbjct: 261 EDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEW 308


>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
 pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
          Length = 317

 Score = 32.3 bits (72), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 318 EDDVPYGYGFFHFVFATGAMYFAMLLIGWNTHHTIRKWTIDVGWTSTW 365
           ED + Y  G +H V        A+ L+GW T + +  W I   W + W
Sbjct: 238 EDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEW 285


>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
           With Ca074
 pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
           With Ca074
          Length = 325

 Score = 32.3 bits (72), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 15/48 (31%), Positives = 22/48 (45%)

Query: 318 EDDVPYGYGFFHFVFATGAMYFAMLLIGWNTHHTIRKWTIDVGWTSTW 365
           ED + Y  G +H V        A+ L+GW T + +  W I   W + W
Sbjct: 239 EDFIAYNSGVYHHVSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEW 286


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.139    0.470 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,783,864
Number of Sequences: 62578
Number of extensions: 445009
Number of successful extensions: 861
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 858
Number of HSP's gapped (non-prelim): 3
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 52 (24.6 bits)