Query 015980
Match_columns 397
No_of_seqs 117 out of 428
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 02:41:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015980.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015980hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2592 Tumor differentially e 100.0 3E-123 7E-128 914.9 30.1 386 2-394 2-426 (426)
2 PF03348 Serinc: Serine incorp 100.0 9E-118 2E-122 911.1 35.7 371 19-393 11-429 (429)
3 PF08426 ICE2: ICE2; InterPro 96.2 0.49 1.1E-05 49.1 18.7 198 34-257 2-224 (412)
4 COG2142 SdhD Succinate dehydro 43.3 1.7E+02 0.0036 25.5 8.2 93 101-196 4-106 (117)
5 MTH00136 ND3 NADH dehydrogenas 39.0 91 0.002 26.7 5.9 14 157-170 97-110 (116)
6 PF06123 CreD: Inner membrane 38.8 3.7E+02 0.008 28.5 11.5 61 35-122 298-358 (430)
7 PF13334 DUF4094: Domain of un 37.2 33 0.00071 28.7 2.8 21 330-350 6-28 (95)
8 PRK06602 NADH:ubiquinone oxido 36.0 91 0.002 26.9 5.5 14 157-170 103-116 (121)
9 MTH00106 ND3 NADH dehydrogenas 32.8 1.4E+02 0.003 25.5 6.1 14 157-170 96-109 (115)
10 PRK07756 NADH dehydrogenase su 31.6 1.3E+02 0.0028 26.0 5.8 14 157-170 104-117 (122)
11 PRK11715 inner membrane protei 27.8 6.3E+02 0.014 26.8 11.0 61 35-122 304-364 (436)
12 MTH00203 ND3 NADH dehydrogenas 27.3 1.6E+02 0.0034 25.0 5.4 14 157-170 95-108 (112)
13 PF08409 DUF1736: Domain of un 26.5 1.4E+02 0.0031 24.1 4.7 46 349-394 7-53 (80)
14 MTH00042 ND3 NADH dehydrogenas 25.0 2.1E+02 0.0046 24.4 5.9 14 157-170 97-110 (116)
15 PRK06432 NADH dehydrogenase su 24.8 2.3E+02 0.0049 25.6 6.1 16 155-170 123-138 (144)
16 MTH00055 ND3 NADH dehydrogenas 22.8 1.8E+02 0.004 24.9 5.1 14 157-170 100-113 (118)
17 PRK07928 NADH dehydrogenase su 22.5 2.7E+02 0.0058 24.0 6.0 14 157-170 101-114 (119)
18 MTH00092 ND3 NADH dehydrogenas 22.4 2.4E+02 0.0052 24.0 5.6 12 159-170 94-105 (111)
19 PF11241 DUF3043: Protein of u 22.4 1.9E+02 0.0041 26.8 5.3 62 106-174 72-133 (170)
20 CHL00022 ndhC NADH dehydrogena 22.0 2.9E+02 0.0063 23.8 6.2 14 157-170 102-115 (120)
21 MTH00012 ND3 NADH dehydrogenas 21.2 2.5E+02 0.0054 24.0 5.6 14 157-170 98-111 (117)
22 MTH00018 ND3 NADH dehydrogenas 21.1 2.2E+02 0.0047 24.2 5.1 14 157-170 95-108 (113)
23 PF02444 HEV_ORF1: Hepatitis E 20.9 51 0.0011 27.8 1.1 28 3-37 6-33 (114)
No 1
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=100.00 E-value=3.3e-123 Score=914.87 Aligned_cols=386 Identities=28% Similarity=0.611 Sum_probs=350.3
Q ss_pred CCCCccchhhhhhcccccccccccCCCCchhHHHHHHHHHHHHHHHHHHcccch-hHHhhcCCcccCCCC--CCcccchh
Q 015980 2 ESGTGAGIQRRAIFKEDSWFSQFRNGSNPWMARYVYALIFLVANLLAWVVRDYS-SAALTEMEKLKNCQG--GHHCLGAQ 78 (397)
Q Consensus 2 ~~~~~~~~~~~c~~~~~~~c~~c~~~~~s~~tR~~Y~~~fll~~ils~i~~~~~-~~~l~~~~~~~~C~~--~~~C~G~~ 78 (397)
.++++..| ||+-.++=+|++||+.+||+.||++|+++++++++++|+|+ ++ +++++|.|+. |++ .+.|.|++
T Consensus 2 ~~~s~~~c--c~g~~acl~cs~cps~~nst~tRl~ya~~l~l~~~vs~i~~-~~~~~~l~k~p~~--c~~~~c~~~~gy~ 76 (426)
T KOG2592|consen 2 SAASSVAC--CCGGAACLLCSCCPSLTNSTVTRLIYAFILLLGTLVSWIML-PGAEKQLNKLPWF--CEGNDCGKLLGYK 76 (426)
T ss_pred chHHHHHH--hhcchHHHHHhhCCCCCchhHHHHHHHHHHHHHHHHHHHhh-hhHHHHHhhCCcc--ccCCCcccchhhh
Confidence 34556666 66622223478899999999999999999999999999999 65 6699999997 653 35568999
Q ss_pred hhhhhhhhHHHHHHHHHHHHhccCCCCCccchhcccchhHHHHHHHHHHhheeecCch-hhHHHHHHHHHHHHHHHHHHH
Q 015980 79 GVLRVSLGCFVFYIIMFLLTAGTSKLHGTRDLWHSGWWSAKIVLWIALTIIPFLLPSS-FIQLYGEIAHFGAGVFLLIQL 157 (397)
Q Consensus 79 aVyRvsfal~~Ff~l~~l~~i~v~ss~d~Ra~ihnGfW~~K~l~~~~l~v~~FfIP~~-f~~~y~~v~~~ga~~FiliQl 157 (397)
||||+|||+++||++++++|+|||++||+|++||||||++|+++|+++.+++|||||+ +...|.+++++||++|||+||
T Consensus 77 AVyR~~f~~a~Ff~~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~i~~FfIP~~~~~~~~~~v~~~Ga~~FILvqL 156 (426)
T KOG2592|consen 77 AVYRLCFGLACFFLLLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLIVGSFFIPNGFFISFWFYVSVFGAALFILVQL 156 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHHHheEEcCCccchhHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999997 677999999999999999999
Q ss_pred HHHHHHHHHHhHHhhcc-cccchhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCchhHHHHHHHHHHHHHHhhhhccc
Q 015980 158 ISVISFITWLNDCCLSE-KNAERCHIHVMLIATVAYIICIVGIIMMYIWYTPDPTCLLNIFFITWTLVLLQLMTSVSLHP 236 (397)
Q Consensus 158 IlLvDFa~~wne~w~~~-~~~~~w~~~L~~~t~~~y~~si~~~v~my~~f~~~~~C~lN~~fIt~nliL~vi~svisl~p 236 (397)
||||||||+|||+|++| ||++.||++|+++|+++|+++++++++||++|++++||++||+||++|+++|++++++|+||
T Consensus 157 vLLvDFaH~w~e~wv~~~Edsr~wy~~Ll~~T~~~Y~~s~~~~~l~fv~ft~~~~C~~nk~fi~~nlilcv~~si~sv~P 236 (426)
T KOG2592|consen 157 VLLVDFAHSWNESWVEKVEDSRFWYAALLGVTLLMYLLSLVATVLLFVYFTPGDGCGENKFFISVNLILCVAISILSVHP 236 (426)
T ss_pred HHHHHHHhhHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHhheEecCCCCCCcceEEEeechHHHHHHHHHhcCh
Confidence 99999999999999998 77788999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-----cccCcchhHHHHHHHhhhhhhhcCCCCCCCCCCcccCC-------------CCchhHHHHHHHHHHHHHHHh
Q 015980 237 KIN-----SGFLAPGLMGLYIIFLCWCAIRSEPAGETCNRKAEASN-------------KTDWLTIISFVVALLAIVIAT 298 (397)
Q Consensus 237 ~v~-----~gLLqssiv~~Y~~yLt~SAlss~P~~~~Cnp~~~~~~-------------~~~~~~iig~~~~~~~i~ys~ 298 (397)
++| +||||||+|++|+||||||||+||| |++|||...+.. ..+.+.++|+++++++++|++
T Consensus 237 ~VQe~~P~SGLlQSsvIs~Y~~YLt~SAlss~P-e~~CNP~~~~~~~~t~~~~~~~~~~~~~~~~iiGli~~~lcilYsa 315 (426)
T KOG2592|consen 237 KVQEGQPRSGLLQSSVISLYTMYLTWSALSSEP-ENGCNPWLNSSKNVTITVGPGASVSTFDATNIIGLIFLLLCILYSA 315 (426)
T ss_pred hhhcCCCCcccchhHHHHHHHHHHHHHHHhcCC-ccccChhhhcccccccccCcccccccccccchHHHHHHHHHHHHHH
Confidence 887 7999999999999999999999999 999999754321 225578999999999999999
Q ss_pred cccCcccchhc--------------cc--CCCCCCCCCCCcchhHHHHHHHHHHHHHHHhhcCCCCcCCCcceeeecCce
Q 015980 299 FSTGIDSQCFQ--------------LR--KSESPAEDDVPYGYGFFHFVFATGAMYFAMLLIGWNTHHTIRKWTIDVGWT 362 (397)
Q Consensus 299 ~~~~~~~~~~~--------------~~--~~~d~e~~~~~Y~ysfFH~vf~Las~Y~~M~lTnW~~~~~~~~~~~~~gw~ 362 (397)
.|++++++... ++ |+.|||+|++.|+|+|||++|+|||+|+||+||||+++++ +.+.++.+|+
T Consensus 316 lR~~s~~~l~k~~~~~~e~~~l~~~dG~~~~~d~Ek~GV~YsYsfFHfvf~LASlyvmmtLTnW~~~~~-~~~~v~~~w~ 394 (426)
T KOG2592|consen 316 LRASSRTQLRKLTRSNEEEPLLPDEDGGGRANDNEKDGVTYSYSFFHFVFVLASLYVMMTLTNWYTPDE-DIWFVKSSWA 394 (426)
T ss_pred hhccccccccccccccccccCccCCCCCcccccccCCCeeEeeeHHHHHHHHHHHHHHHHhccccCCCC-ceeEEeccch
Confidence 99988886641 11 2456788899999999999999999999999999999984 3378999999
Q ss_pred ehhhhhHHHHHHHHHHHHHhhhcccccCCCCC
Q 015980 363 STWVRIVNEWLAVCVYLWMLVAPVILKSSRAA 394 (397)
Q Consensus 363 s~WVKi~s~W~~~~LY~WtLvAP~i~pdRdF~ 394 (397)
++||||+++|+|.+||+||||||+++|||||+
T Consensus 395 ~vWVKI~ssWic~~LY~WTlVAPli~p~Rdf~ 426 (426)
T KOG2592|consen 395 SVWVKIVSSWICSGLYLWTLVAPLILPDRDFS 426 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhccccccC
Confidence 99999999999999999999999999999996
No 2
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=100.00 E-value=8.5e-118 Score=911.13 Aligned_cols=371 Identities=33% Similarity=0.676 Sum_probs=339.2
Q ss_pred cccccccCC-CCchhHHHHHHHHHHHHHHHHHHcccch-hHHh-hcCCccc--CCCCCCcccchhhhhhhhhhHHHHHHH
Q 015980 19 SWFSQFRNG-SNPWMARYVYALIFLVANLLAWVVRDYS-SAAL-TEMEKLK--NCQGGHHCLGAQGVLRVSLGCFVFYII 93 (397)
Q Consensus 19 ~~c~~c~~~-~~s~~tR~~Y~~~fll~~ils~i~~~~~-~~~l-~~~~~~~--~C~~~~~C~G~~aVyRvsfal~~Ff~l 93 (397)
+||+|||+. ++|+.||++|+++|+++++++|+|++++ .+.+ +++|++. +|+ +++|+|++||||+|||+++||++
T Consensus 11 ~~c~~c~~~~~~s~~tR~~Ya~~~l~~~i~a~i~~~~~~~~~l~~~~~~~~~~~C~-~~~c~G~~aVyRvsfal~~Ff~l 89 (429)
T PF03348_consen 11 LCCSCCPSCFKSSTSTRIMYALIFLLGTILAWIMLSPGVESKLKKKIPWFCGFDCP-SDSCVGYSAVYRVSFALALFFFL 89 (429)
T ss_pred HHHhccCCcCcccHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccccCCCCcc-hHHhhhhHHHHHHHHHHHHHHHH
Confidence 467889987 9999999999999999999999999865 3344 4488763 786 67899999999999999999999
Q ss_pred HHHHHhccCCCCCccchhcccchhHHHHHHHHHHhheeecCc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhh
Q 015980 94 MFLLTAGTSKLHGTRDLWHSGWWSAKIVLWIALTIIPFLLPS-SFIQLYGEIAHFGAGVFLLIQLISVISFITWLNDCCL 172 (397)
Q Consensus 94 ~~l~~i~v~ss~d~Ra~ihnGfW~~K~l~~~~l~v~~FfIP~-~f~~~y~~v~~~ga~~FiliQlIlLvDFa~~wne~w~ 172 (397)
|+++|+|||+++|+|+++|||||++|+++|+++++++||||| .|+++|+++|++||++||++|+|+||||||+|||+|+
T Consensus 90 ~~l~~i~v~~~~d~Ra~ihng~W~~K~l~l~~l~v~~FfiP~~~f~~~~~~v~~~ga~~FiliQlIlLvDFah~wne~w~ 169 (429)
T PF03348_consen 90 MALLTIGVKSSRDPRAAIHNGFWFLKFLLLIGLIVGAFFIPNGSFINVYMYVARVGAFIFILIQLILLVDFAHSWNESWV 169 (429)
T ss_pred HHHHHhhcCCCccHHHHHHHhhHHHHHHHHHHHHheeEEeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999 5899999999999999999999999999999999999
Q ss_pred cccc---cchhHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCchhHHHHHHHHHHHHHHhhhhccccc-----ccccCc
Q 015980 173 SEKN---AERCHIHVMLIATVAYIICIVGIIMMYIWYTPDPTCLLNIFFITWTLVLLQLMTSVSLHPKI-----NSGFLA 244 (397)
Q Consensus 173 ~~~~---~~~w~~~L~~~t~~~y~~si~~~v~my~~f~~~~~C~lN~~fIt~nliL~vi~svisl~p~v-----~~gLLq 244 (397)
+|.| +++|+.+|+++|+++|+++++++++||++|+ ++||.+||+||++|++||++++++|++||| |+||||
T Consensus 170 ~~~e~~~s~~w~~~Li~~T~~~y~~si~~~v~~y~~f~-~~~C~lN~~fIt~nliL~vi~s~lSv~p~Vqe~~p~sgLLq 248 (429)
T PF03348_consen 170 EKAEEGNSKRWYIALIGVTLLFYAASIAGIVLMYVFFT-PSGCSLNKFFITFNLILCVIISVLSVLPKVQEANPRSGLLQ 248 (429)
T ss_pred hccccccCceehhHHHHHHHHHHHHHHHHHHHHHHHhC-CCCCchhHHHHHHHHHHHHHHHHHHhhhhhhhcCCCccccc
Confidence 9833 3689999999999999999999999999999 789999999999999999999999999987 579999
Q ss_pred chhHHHHHHHhhhhhhhcCCCCCCCCCC-cccCCCCchhHHHHHHHHHHHHHHHhcccCcccchh-----cc--------
Q 015980 245 PGLMGLYIIFLCWCAIRSEPAGETCNRK-AEASNKTDWLTIISFVVALLAIVIATFSTGIDSQCF-----QL-------- 310 (397)
Q Consensus 245 ssiv~~Y~~yLt~SAlss~P~~~~Cnp~-~~~~~~~~~~~iig~~~~~~~i~ys~~~~~~~~~~~-----~~-------- 310 (397)
||+|++|+||||||||+||| |++|||. .++.+..++++++|+++++++++|+++|++++++.. ++
T Consensus 249 ssvv~~Y~~yL~~SAlss~P-~~~CNp~~~~~~~~~~~~~iig~i~~~~~v~yss~ra~~~s~~~~~~l~~~~~~~~~~~ 327 (429)
T PF03348_consen 249 SSVVSLYTTYLTWSALSSEP-DKECNPSGSRSGSWNTWQSIIGLIFTFVSVLYSSFRASSSSQVGKLQLSSDSEGEQPKC 327 (429)
T ss_pred HHHHHHHHHHHHHHHHHcCC-CcccCCcccccCCcchHHHHHHHHHHHHHHHHhccccccccchhhhhccCccccccCcc
Confidence 99999999999999999999 8999998 555667788999999999999999999998777621 00
Q ss_pred --------------------cCCCCCCCCCCCcchhHHHHHHHHHHHHHHHhhcCCCCcCCCcceeeecCceehhhhhHH
Q 015980 311 --------------------RKSESPAEDDVPYGYGFFHFVFATGAMYFAMLLIGWNTHHTIRKWTIDVGWTSTWVRIVN 370 (397)
Q Consensus 311 --------------------~~~~d~e~~~~~Y~ysfFH~vf~Las~Y~~M~lTnW~~~~~~~~~~~~~gw~s~WVKi~s 370 (397)
++.+|||+|+++|||+|||++|+|||||+||++|||++++ ++.+.+++||+++||||+|
T Consensus 328 ~~~~~~~~~~~~~~e~~~~~~~~~d~e~~~~~y~y~~FH~vf~las~Y~am~lTnW~~~~-~~~~~~~~~~~~~Wvki~s 406 (429)
T PF03348_consen 328 CFNEDRDQADRADVEEGSLPQSVIDDEEDGVSYSYSFFHFVFALASMYVAMLLTNWYSPD-ADFETVGSGWASVWVKIAS 406 (429)
T ss_pred ccccccccccccchhccccCcccccccccCCcccHHHHHHHHHHHHHHHHHHhccccCCc-cccccccCCcceehHHHHH
Confidence 0012456677999999999999999999999999999994 4455899999999999999
Q ss_pred HHHHHHHHHHHhhhcccccCCCC
Q 015980 371 EWLAVCVYLWMLVAPVILKSSRA 393 (397)
Q Consensus 371 ~W~~~~LY~WtLvAP~i~pdRdF 393 (397)
+|+|++||+||||||+++|||||
T Consensus 407 ~W~~~~LY~WtLvAP~~~p~RdF 429 (429)
T PF03348_consen 407 SWVCLLLYIWTLVAPLLFPDRDF 429 (429)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999998
No 3
>PF08426 ICE2: ICE2; InterPro: IPR013635 ICE2 is a fungal ER protein which has been shown to play an important role in forming/maintaining the cortical ER []. It has also been identified as a protein which is necessary for nuclear inner membrane targeting [].
Probab=96.20 E-value=0.49 Score=49.06 Aligned_cols=198 Identities=18% Similarity=0.266 Sum_probs=129.2
Q ss_pred HHHHHHHHHHHHHHHHHcccchhHHhhcCCcccCCCCCCcccchhhhhhhhhhHHHHHHHHHHHHhccCCCCCccchhcc
Q 015980 34 RYVYALIFLVANLLAWVVRDYSSAALTEMEKLKNCQGGHHCLGAQGVLRVSLGCFVFYIIMFLLTAGTSKLHGTRDLWHS 113 (397)
Q Consensus 34 R~~Y~~~fll~~ils~i~~~~~~~~l~~~~~~~~C~~~~~C~G~~aVyRvsfal~~Ff~l~~l~~i~v~ss~d~Ra~ihn 113 (397)
|...+.+|++..+++.-+ .++ -+|.+| | .-.|+.++.||++.+.+-+-.++++ +..+-.
T Consensus 2 r~~~s~~~L~~ivlsIPl------aFd--------VGG~~c-G----LafSltL~~~Yf~~stl~l~t~~~~--~~~~~s 60 (412)
T PF08426_consen 2 RALLSAFYLLLIVLSIPL------AFD--------VGGRDC-G----LAFSLTLFLFYFILSTLRLATRRTS--YFRLSS 60 (412)
T ss_pred hHHHHHHHHHHHHHHhhh------hhh--------ccCcch-h----HHHHHHHHHHHHHHHHHHHHhCCcc--HHHHHH
Confidence 777788888776666222 111 144667 2 3357888999999988877766554 222111
Q ss_pred cchhHHHHHHHHH--HhheeecCc------------------hhhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHH
Q 015980 114 GWWSAKIVLWIAL--TIIPFLLPS------------------SFIQLYGEIAHFGAGVFLLIQL---ISVISFITWLNDC 170 (397)
Q Consensus 114 GfW~~K~l~~~~l--~v~~FfIP~------------------~f~~~y~~v~~~ga~~FiliQl---IlLvDFa~~wne~ 170 (397)
=.-...-++...+ .....|=.| ...+.|..+=+.-+-+|.+.+- +|+|.=+=+-++
T Consensus 61 ~l~~~Q~~iipsLL~~~L~~fs~~~~~~~~~~~~~~~~~~~~~~v~~W~~~L~~StP~F~llEGf~sLLvIQa~Gq~~r- 139 (412)
T PF08426_consen 61 ILYYSQHLIIPSLLIWFLSRFSVDALNTLNSSSWALWYFYYNGLVEPWDFLLRYSTPVFTLLEGFCSLLVIQAAGQTSR- 139 (412)
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCcccccccccchhhhhhhhchHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhHHHH-
Confidence 1111222222222 222333222 2345677777777888988874 566777777776
Q ss_pred hhccc-ccchhHHHHHHHHHHHHHHHHHHHHhhhhccCCC-CCCchhHHHHHHHHHHHHHHhhhhcccccccccCcchhH
Q 015980 171 CLSEK-NAERCHIHVMLIATVAYIICIVGIIMMYIWYTPD-PTCLLNIFFITWTLVLLQLMTSVSLHPKINSGFLAPGLM 248 (397)
Q Consensus 171 w~~~~-~~~~w~~~L~~~t~~~y~~si~~~v~my~~f~~~-~~C~lN~~fIt~nliL~vi~svisl~p~v~~gLLqssiv 248 (397)
|+.++ .++.|...++..+...+..+. .++|--|.-| +-=..+...|++.+-..+.+++.-+. .-|++...||.+
T Consensus 140 WLv~~~rSd~W~I~~Li~Sg~vit~s~---YfLyRIy~fp~~is~~~AtLiG~~lT~~~~L~~~GI~-sgrGn~iESSLl 215 (412)
T PF08426_consen 140 WLVNRGRSDSWMIVSLIASGSVITASL---YFLYRIYVFPWTISNLDATLIGVTLTSVVFLGLYGIV-SGRGNVIESSLL 215 (412)
T ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHH---HHHHHhhccccccCcccHHHHHHHHHHHHHHHHheee-cCCCcHHHHHHH
Confidence 87654 567898888888877776665 3455445444 34468999999999999999998887 778999999999
Q ss_pred HHHHHHhhh
Q 015980 249 GLYIIFLCW 257 (397)
Q Consensus 249 ~~Y~~yLt~ 257 (397)
.+|++|=.|
T Consensus 216 FAYiV~cIY 224 (412)
T PF08426_consen 216 FAYIVRCIY 224 (412)
T ss_pred HHHHHHHHH
Confidence 999887776
No 4
>COG2142 SdhD Succinate dehydrogenase, hydrophobic anchor subunit [Energy production and conversion]
Probab=43.35 E-value=1.7e+02 Score=25.45 Aligned_cols=93 Identities=12% Similarity=0.138 Sum_probs=50.8
Q ss_pred cCCCCCccchhcccchhHHHHHHHH------HHhheeecCchhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHHhh-
Q 015980 101 TSKLHGTRDLWHSGWWSAKIVLWIA------LTIIPFLLPSSFIQLYGEIAHFGAG-VFLLIQLISVISFITWLNDCCL- 172 (397)
Q Consensus 101 v~ss~d~Ra~ihnGfW~~K~l~~~~------l~v~~FfIP~~f~~~y~~v~~~ga~-~FiliQlIlLvDFa~~wne~w~- 172 (397)
.|.+...|...|| ||....-.++. .....+..||.....+. +++..- -..+..+.++.-..|.||--|.
T Consensus 4 ~~~s~~ar~G~~~-~l~qRvTav~Lv~l~~~~l~~~l~~~~~~y~~~~--~~~s~p~~~v~~lL~l~~~l~H~~~Glr~I 80 (117)
T COG2142 4 ARGSGSARYGSHD-WLLQRVTAVILVLLVIWHLYFLLTWLNATYAAWV--AFLANPFWKVFLLLLLVAALIHAWNGLRVI 80 (117)
T ss_pred cccccccccchHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHH--HHHhCHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3556667777777 55544432221 11122234555655555 344333 4566678888899999998775
Q ss_pred -cc-cccchhHHHHHHHHHHHHHHHH
Q 015980 173 -SE-KNAERCHIHVMLIATVAYIICI 196 (397)
Q Consensus 173 -~~-~~~~~w~~~L~~~t~~~y~~si 196 (397)
++ -.+.+++..+...+.+.+.+.+
T Consensus 81 i~DYi~~~~~r~~l~~~~~~~~v~~~ 106 (117)
T COG2142 81 IEDYIKPEKLRLALQILLVLALVLTG 106 (117)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 32 1233455555555555544443
No 5
>MTH00136 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=38.99 E-value=91 Score=26.70 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhHH
Q 015980 157 LISVISFITWLNDC 170 (397)
Q Consensus 157 lIlLvDFa~~wne~ 170 (397)
+++++-+.|+|++.
T Consensus 97 ~iL~~gl~yew~~G 110 (116)
T MTH00136 97 ILLTLGLIYEWLQG 110 (116)
T ss_pred HHHHHHHHHHHHcC
Confidence 78889999999864
No 6
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=38.76 E-value=3.7e+02 Score=28.47 Aligned_cols=61 Identities=23% Similarity=0.431 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHcccchhHHhhcCCcccCCCCCCcccchhhhhhhhhhHHHHHHHHHHHHhccCCCCCccchhccc
Q 015980 35 YVYALIFLVANLLAWVVRDYSSAALTEMEKLKNCQGGHHCLGAQGVLRVSLGCFVFYIIMFLLTAGTSKLHGTRDLWHSG 114 (397)
Q Consensus 35 ~~Y~~~fll~~ils~i~~~~~~~~l~~~~~~~~C~~~~~C~G~~aVyRvsfal~~Ff~l~~l~~i~v~ss~d~Ra~ihnG 114 (397)
.-|+++|+.-+.++.++-. .+++.+- +=+-|. =|.+|+++||+++.-+ +=|=|
T Consensus 298 ~KYgiLFI~LTF~~fflfE----~~~~~~i--------HpiQY~---LVGlAl~lFYlLLLSl------------SEhi~ 350 (430)
T PF06123_consen 298 VKYGILFIGLTFLAFFLFE----LLSKLRI--------HPIQYL---LVGLALVLFYLLLLSL------------SEHIG 350 (430)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHhcCcc--------cHHHHH---HHHHHHHHHHHHHHHH------------Hhhhc
Confidence 5699999998888888743 4444331 111222 2568999999865322 12667
Q ss_pred chhHHHHH
Q 015980 115 WWSAKIVL 122 (397)
Q Consensus 115 fW~~K~l~ 122 (397)
|+..=.+.
T Consensus 351 F~~AYliA 358 (430)
T PF06123_consen 351 FNLAYLIA 358 (430)
T ss_pred hHHHHHHH
Confidence 76655443
No 7
>PF13334 DUF4094: Domain of unknown function (DUF4094)
Probab=37.19 E-value=33 Score=28.65 Aligned_cols=21 Identities=14% Similarity=0.488 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHhhcC--CCCcC
Q 015980 330 FVFATGAMYFAMLLIG--WNTHH 350 (397)
Q Consensus 330 ~vf~Las~Y~~M~lTn--W~~~~ 350 (397)
++++++|....|++|| |..|+
T Consensus 6 l~Lc~~SF~~G~lft~R~W~~pe 28 (95)
T PF13334_consen 6 LLLCIASFCAGMLFTNRMWTVPE 28 (95)
T ss_pred HHHHHHHHHHHHHHhcccccCCc
Confidence 6899999999999999 97664
No 8
>PRK06602 NADH:ubiquinone oxidoreductase subunit A; Validated
Probab=35.97 E-value=91 Score=26.90 Aligned_cols=14 Identities=7% Similarity=0.261 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHH
Q 015980 157 LISVISFITWLNDC 170 (397)
Q Consensus 157 lIlLvDFa~~wne~ 170 (397)
+++++-+.|+|++.
T Consensus 103 ~iL~~gl~yew~~G 116 (121)
T PRK06602 103 LVLLVGLVYLWRKG 116 (121)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999863
No 9
>MTH00106 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=32.85 E-value=1.4e+02 Score=25.49 Aligned_cols=14 Identities=7% Similarity=-0.078 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhHH
Q 015980 157 LISVISFITWLNDC 170 (397)
Q Consensus 157 lIlLvDFa~~wne~ 170 (397)
.++++-+.|+|++.
T Consensus 96 ~iL~~gl~yew~~G 109 (115)
T MTH00106 96 SLLALSLAYEWTQK 109 (115)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999863
No 10
>PRK07756 NADH dehydrogenase subunit A; Validated
Probab=31.59 E-value=1.3e+02 Score=25.98 Aligned_cols=14 Identities=0% Similarity=0.026 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhHH
Q 015980 157 LISVISFITWLNDC 170 (397)
Q Consensus 157 lIlLvDFa~~wne~ 170 (397)
.++++-+.|+|++.
T Consensus 104 ~iL~~gl~yew~~G 117 (122)
T PRK07756 104 VMLLVGLAYAWKKK 117 (122)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999763
No 11
>PRK11715 inner membrane protein; Provisional
Probab=27.79 E-value=6.3e+02 Score=26.85 Aligned_cols=61 Identities=23% Similarity=0.419 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHcccchhHHhhcCCcccCCCCCCcccchhhhhhhhhhHHHHHHHHHHHHhccCCCCCccchhccc
Q 015980 35 YVYALIFLVANLLAWVVRDYSSAALTEMEKLKNCQGGHHCLGAQGVLRVSLGCFVFYIIMFLLTAGTSKLHGTRDLWHSG 114 (397)
Q Consensus 35 ~~Y~~~fll~~ils~i~~~~~~~~l~~~~~~~~C~~~~~C~G~~aVyRvsfal~~Ff~l~~l~~i~v~ss~d~Ra~ihnG 114 (397)
.-|+++|+.-+.++.++-. .+++.+- +=+-|. =|.+|+++||+++.-+ +=|=|
T Consensus 304 ~KYgiLFI~LTF~~fFlfE----~~~~~~i--------HpiQYl---LVGlAl~lFYLLLLSl------------SEHig 356 (436)
T PRK11715 304 VKYAILFIALTFAAFFLFE----LLKKLRI--------HPVQYL---LVGLALVLFYLLLLSL------------SEHIG 356 (436)
T ss_pred HhHHHHHHHHHHHHHHHHH----HhcCcee--------cHHHHH---HHHHHHHHHHHHHHHH------------Hhhhc
Confidence 5699999988888887733 4444331 111222 2568999999865322 22667
Q ss_pred chhHHHHH
Q 015980 115 WWSAKIVL 122 (397)
Q Consensus 115 fW~~K~l~ 122 (397)
|+..=.+.
T Consensus 357 F~~AYliA 364 (436)
T PRK11715 357 FTLAYLIA 364 (436)
T ss_pred hHHHHHHH
Confidence 76654443
No 12
>MTH00203 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=27.32 E-value=1.6e+02 Score=25.03 Aligned_cols=14 Identities=7% Similarity=0.043 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHH
Q 015980 157 LISVISFITWLNDC 170 (397)
Q Consensus 157 lIlLvDFa~~wne~ 170 (397)
+++++-+.|+|.+.
T Consensus 95 ~iL~~gl~yew~~G 108 (112)
T MTH00203 95 ILLTLGLIYEWLQG 108 (112)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999864
No 13
>PF08409 DUF1736: Domain of unknown function (DUF1736); InterPro: IPR013618 This domain of unknown function is found in various hypothetical metazoan proteins.
Probab=26.52 E-value=1.4e+02 Score=24.10 Aligned_cols=46 Identities=13% Similarity=-0.010 Sum_probs=34.0
Q ss_pred cCCCcceeeecCceehhhhhHHHHHHHHHHHHHhhhcc-cccCCCCC
Q 015980 349 HHTIRKWTIDVGWTSTWVRIVNEWLAVCVYLWMLVAPV-ILKSSRAA 394 (397)
Q Consensus 349 ~~~~~~~~~~~gw~s~WVKi~s~W~~~~LY~WtLvAP~-i~pdRdF~ 394 (397)
|+..+.++....-.+.+.|..+----..+|.|-|+.|. ++.|-.++
T Consensus 7 P~F~~~DNPaa~~~~~~tR~LT~~yl~~~n~~LLl~P~~L~~DWSm~ 53 (80)
T PF08409_consen 7 PQFSEFDNPAAFAPSLLTRWLTYNYLPAFNLWLLLFPSWLCFDWSMG 53 (80)
T ss_pred CCCCCCCCCcccCCcHHHHHHHHHHHHHHHHHHHHCccccCCcCCCC
Confidence 33334444445566799999999999999999999998 57776543
No 14
>MTH00042 ND3 NADH dehydrogenase subunit 3; Validated
Probab=25.02 E-value=2.1e+02 Score=24.42 Aligned_cols=14 Identities=14% Similarity=0.129 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhHH
Q 015980 157 LISVISFITWLNDC 170 (397)
Q Consensus 157 lIlLvDFa~~wne~ 170 (397)
.++++-+.|+|.+.
T Consensus 97 ~iL~~gl~yew~~G 110 (116)
T MTH00042 97 IILTIGLVYEWVNG 110 (116)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999763
No 15
>PRK06432 NADH dehydrogenase subunit A; Validated
Probab=24.77 E-value=2.3e+02 Score=25.59 Aligned_cols=16 Identities=0% Similarity=-0.066 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHhHH
Q 015980 155 IQLISVISFITWLNDC 170 (397)
Q Consensus 155 iQlIlLvDFa~~wne~ 170 (397)
+=+++++-+.|+|++.
T Consensus 123 Fl~iL~lGLiYEWkkG 138 (144)
T PRK06432 123 FLAMPLFAVYYAFKMG 138 (144)
T ss_pred HHHHHHHHHHHHHHcC
Confidence 3356889999999874
No 16
>MTH00055 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=22.84 E-value=1.8e+02 Score=24.91 Aligned_cols=14 Identities=21% Similarity=0.110 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHhHH
Q 015980 157 LISVISFITWLNDC 170 (397)
Q Consensus 157 lIlLvDFa~~wne~ 170 (397)
+++++-+.|+|.+.
T Consensus 100 ~iL~~gl~yew~~G 113 (118)
T MTH00055 100 IILTIGLIYEWVKG 113 (118)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999863
No 17
>PRK07928 NADH dehydrogenase subunit A; Validated
Probab=22.50 E-value=2.7e+02 Score=23.99 Aligned_cols=14 Identities=7% Similarity=0.093 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhHH
Q 015980 157 LISVISFITWLNDC 170 (397)
Q Consensus 157 lIlLvDFa~~wne~ 170 (397)
+++++-+.|+|.+.
T Consensus 101 ~iL~~Gl~yew~~G 114 (119)
T PRK07928 101 LTVFVAYAYVWRRG 114 (119)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999874
No 18
>MTH00092 ND3 NADH dehydrogenase subunit 3; Provisional
Probab=22.44 E-value=2.4e+02 Score=23.97 Aligned_cols=12 Identities=8% Similarity=-0.219 Sum_probs=10.3
Q ss_pred HHHHHHHHHhHH
Q 015980 159 SVISFITWLNDC 170 (397)
Q Consensus 159 lLvDFa~~wne~ 170 (397)
+++-+.|+|++.
T Consensus 94 L~~Gl~yew~~G 105 (111)
T MTH00092 94 IFFGFYMEWWYG 105 (111)
T ss_pred HHHHHHHHHHcC
Confidence 789999999874
No 19
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=22.35 E-value=1.9e+02 Score=26.77 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=32.3
Q ss_pred CccchhcccchhHHHHHHHHHHhheeecCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhcc
Q 015980 106 GTRDLWHSGWWSAKIVLWIALTIIPFLLPSSFIQLYGEIAHFGAGVFLLIQLISVISFITWLNDCCLSE 174 (397)
Q Consensus 106 d~Ra~ihnGfW~~K~l~~~~l~v~~FfIP~~f~~~y~~v~~~ga~~FiliQlIlLvDFa~~wne~w~~~ 174 (397)
|.|-.+-+=|.++-++++++.++ .|+..+..|..+++.+-++.+++..+++ .+..+..-.++
T Consensus 72 DsR~~i~e~fmP~alv~lv~~~v----~~~~~~~~~~~~~~~~~~~~~iid~~~l---~r~vkk~v~~k 133 (170)
T PF11241_consen 72 DSRRNIGEFFMPVALVLLVLSFV----VPSPQVQLYVTLAMYVLLLLVIIDGVIL---GRRVKKRVAEK 133 (170)
T ss_pred hcccchHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 44444444445554444444444 5665566666666666555555555554 34444444444
No 20
>CHL00022 ndhC NADH dehydrogenase subunit 3
Probab=22.00 E-value=2.9e+02 Score=23.76 Aligned_cols=14 Identities=14% Similarity=0.245 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHhHH
Q 015980 157 LISVISFITWLNDC 170 (397)
Q Consensus 157 lIlLvDFa~~wne~ 170 (397)
+++++-+.|+|.+.
T Consensus 102 ~iL~~gl~yew~~G 115 (120)
T CHL00022 102 LILIVGLVYAWRKG 115 (120)
T ss_pred HHHHHHHHHHHHhC
Confidence 67889999999864
No 21
>MTH00012 ND3 NADH dehydrogenase subunit 3; Validated
Probab=21.17 E-value=2.5e+02 Score=24.01 Aligned_cols=14 Identities=36% Similarity=0.368 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhHH
Q 015980 157 LISVISFITWLNDC 170 (397)
Q Consensus 157 lIlLvDFa~~wne~ 170 (397)
+++++-+.|+|.+.
T Consensus 98 ~iL~lgl~yew~~G 111 (117)
T MTH00012 98 LILVIGLIHEWREG 111 (117)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999864
No 22
>MTH00018 ND3 NADH dehydrogenase subunit 3; Validated
Probab=21.12 E-value=2.2e+02 Score=24.19 Aligned_cols=14 Identities=14% Similarity=0.048 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHhHH
Q 015980 157 LISVISFITWLNDC 170 (397)
Q Consensus 157 lIlLvDFa~~wne~ 170 (397)
+++++-+.|+|++.
T Consensus 95 ~iL~~gl~yew~~g 108 (113)
T MTH00018 95 FILTLGLIYEWIKG 108 (113)
T ss_pred HHHHHHHHHHHHcC
Confidence 57889999999863
No 23
>PF02444 HEV_ORF1: Hepatitis E virus ORF-2 (Putative capsid protein); InterPro: IPR003384 The Hepatitis E virus(HEV) genome is a single-stranded, positive-sense RNA molecule of approximately 7.5 kb []. Three open reading frames (ORF) were identified within the HEV genome: ORF1 encodes nonstructural proteins, ORF2 encodes the putative structural protein(s), and ORF3 encodes a protein of unknown function. ORF2 contains a consensus signal peptide sequence at its amino terminus and a capsid-like region with a high content of basic amino acids similar to that seen with other virus capsid proteins [].; GO: 0030430 host cell cytoplasm
Probab=20.86 E-value=51 Score=27.79 Aligned_cols=28 Identities=7% Similarity=-0.084 Sum_probs=18.8
Q ss_pred CCCccchhhhhhcccccccccccCCCCchhHHHHH
Q 015980 3 SGTGAGIQRRAIFKEDSWFSQFRNGSNPWMARYVY 37 (397)
Q Consensus 3 ~~~~~~~~~~c~~~~~~~c~~c~~~~~s~~tR~~Y 37 (397)
|+.++-| ||. . |.|-|||. ..-..|+.-
T Consensus 6 calglfc--~cs--s-cfclccpr--hrp~srla~ 33 (114)
T PF02444_consen 6 CALGLFC--CCS--S-CFCLCCPR--HRPVSRLAA 33 (114)
T ss_pred chhhhhh--ecc--c-ceeeecCC--CCcHHHHHH
Confidence 5666667 777 5 77888884 445567653
Done!