Query 015980
Match_columns 397
No_of_seqs 117 out of 428
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 05:51:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015980.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015980hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j1r_A Archaeal adhesion filam 46.4 20 0.00067 22.0 3.0 22 185-206 4-25 (26)
2 3rko_A NADH-quinone oxidoreduc 30.9 31 0.0011 29.8 3.0 22 153-174 104-128 (147)
3 2lx0_A Membrane fusion protein 14.0 50 0.0017 20.7 0.5 11 111-121 19-29 (32)
4 1dl0_A J-atracotoxin-HV1C; neu 12.7 69 0.0024 20.8 0.9 8 19-26 12-19 (37)
5 3ixz_A Potassium-transporting 8.0 6.3E+02 0.022 27.9 7.2 25 111-135 960-984 (1034)
6 2o8m_C Protease; NS3, NS4A, vi 7.5 1.1E+02 0.0038 18.8 0.5 8 385-392 17-24 (26)
7 4b4a_A TATC, SEC-independent p 7.3 7.4E+02 0.025 22.6 6.3 121 134-264 57-204 (249)
8 3rlb_A THIT; S-component, ECF 5.2 1.1E+03 0.038 20.6 6.0 50 182-232 122-178 (192)
9 1r7c_A Genome polyprotein; mem 4.2 5.2E+02 0.018 16.4 2.1 15 364-378 3-17 (31)
10 1dmc_A CD6 metallothionein-1; 4.1 3.2E+02 0.011 17.2 1.0 15 12-26 17-31 (31)
No 1
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=46.42 E-value=20 Score=22.02 Aligned_cols=22 Identities=14% Similarity=0.637 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHhhhhcc
Q 015980 185 MLIATVAYIICIVGIIMMYIWY 206 (397)
Q Consensus 185 ~~~t~~~y~~si~~~v~my~~f 206 (397)
+..++++..+++++.+++|.|+
T Consensus 4 iVA~~lLIviav~aaVllylW~ 25 (26)
T 3j1r_A 4 VIATLLLILIAVAAAVLLYTWV 25 (26)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3567788899999999999997
No 2
>3rko_A NADH-quinone oxidoreductase subunit A; complex I, proton pump, membrane protein, Na ubiquinone, cytoplasmic membrane; HET: LFA CA7; 3.00A {Escherichia coli}
Probab=30.91 E-value=31 Score=29.82 Aligned_cols=22 Identities=0% Similarity=0.033 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHhHH---hhcc
Q 015980 153 LLIQLISVISFITWLNDC---CLSE 174 (397)
Q Consensus 153 iliQlIlLvDFa~~wne~---w~~~ 174 (397)
+++=+|+++.+.|+|++. |.++
T Consensus 104 ~~Fl~iL~~Gl~yEW~~GaL~W~~~ 128 (147)
T 3rko_A 104 AIFIFVLLAGLVYLVRIGALDWTPA 128 (147)
T ss_dssp HHHHHHHHHHHHHHHHHTSSSCC--
T ss_pred HHHHHHHHHHHHHHHHcCCeEeccC
Confidence 344467889999999986 6543
No 3
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=13.96 E-value=50 Score=20.66 Aligned_cols=11 Identities=27% Similarity=0.607 Sum_probs=8.1
Q ss_pred hcccchhHHHH
Q 015980 111 WHSGWWSAKIV 121 (397)
Q Consensus 111 ihnGfW~~K~l 121 (397)
+.-|||.+|++
T Consensus 19 lafgfwlfkyl 29 (32)
T 2lx0_A 19 LAFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34588999875
No 4
>1dl0_A J-atracotoxin-HV1C; neurotoxin, insecticidal, cystine knot, vicinal disulfide; NMR {Synthetic} SCOP: g.3.6.2
Probab=12.67 E-value=69 Score=20.79 Aligned_cols=8 Identities=0% Similarity=-0.164 Sum_probs=6.3
Q ss_pred cccccccC
Q 015980 19 SWFSQFRN 26 (397)
Q Consensus 19 ~~c~~c~~ 26 (397)
+||.|||+
T Consensus 12 accpccpg 19 (37)
T 1dl0_A 12 ACCPCCPG 19 (37)
T ss_dssp SSCCCCTT
T ss_pred cccCCCCC
Confidence 66888886
No 5
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase, P-type ATPase, membrane protein, hydrolase, aluminium fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2yn9_A 2xzb_A 1iwc_A 1iwf_A
Probab=8.00 E-value=6.3e+02 Score=27.88 Aligned_cols=25 Identities=12% Similarity=0.198 Sum_probs=15.9
Q ss_pred hcccchhHHHHHHHHHHhheeecCc
Q 015980 111 WHSGWWSAKIVLWIALTIIPFLLPS 135 (397)
Q Consensus 111 ihnGfW~~K~l~~~~l~v~~FfIP~ 135 (397)
+.|-++..-+++-+++.+...++|.
T Consensus 960 ~~N~~l~~~~~~~~~l~~~~~~~p~ 984 (1034)
T 3ixz_A 960 FRNRILVIAIVFQVCIGCFLCYCPG 984 (1034)
T ss_pred cccHHHHHHHHHHHHHHHHHHHhhh
Confidence 4565555556666666666677884
No 6
>2o8m_C Protease; NS3, NS4A, viral protein; 2.00A {Hepatitis c virus} PDB: 2obq_B 3lon_B* 1n1l_C* 1rtl_C* 2a4g_B* 1a1r_C* 2a4q_B* 2f9u_B* 2f9v_B* 2fm2_B* 2gvf_B* 2obo_B* 2a4r_B* 2oc1_B* 2oc7_B* 2oc8_B* 2xcf_C* 2xcn_C* 2xni_C* 3eyd_B* ...
Probab=7.54 E-value=1.1e+02 Score=18.75 Aligned_cols=8 Identities=25% Similarity=0.576 Sum_probs=4.5
Q ss_pred cccccCCC
Q 015980 385 PVILKSSR 392 (397)
Q Consensus 385 P~i~pdRd 392 (397)
|.+-||||
T Consensus 17 p~v~Pdre 24 (26)
T 2o8m_C 17 PAIIPKKX 24 (26)
T ss_dssp CEECCCC-
T ss_pred eEEcCCcC
Confidence 55666665
No 7
>4b4a_A TATC, SEC-independent protein translocase protein TATC; transport protein, TAT secretion system, protein translocati; HET: LMN; 3.50A {Aquifex aeolicus}
Probab=7.34 E-value=7.4e+02 Score=22.62 Aligned_cols=121 Identities=15% Similarity=0.230 Sum_probs=63.0
Q ss_pred CchhhHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHhhcccccchhHHHHHHHHHHHHHHHH-HHHHh----hhh
Q 015980 134 PSSFIQLYGEIAHFGAGV----FLLIQLISVISFITWLNDCCLSEKNAERCHIHVMLIATVAYIICI-VGIIM----MYI 204 (397)
Q Consensus 134 P~~f~~~y~~v~~~ga~~----FiliQlIlLvDFa~~wne~w~~~~~~~~w~~~L~~~t~~~y~~si-~~~v~----my~ 204 (397)
|.+-+..+.+++.+.|.+ +++.|+...+.= .+ .++++|+....+..+.++|.+++ .+.-+ .+.
T Consensus 57 ~~e~f~~~lkvs~~~g~~~a~P~ilyQiw~Fi~P------gL--y~~Err~~~~~~~~s~~LF~~G~~f~Yf~v~P~~~~ 128 (249)
T 4b4a_A 57 PTEPLFILIKISLAVGFIIASPVILYQFWRFIEP------AL--YSHEKRAFIPLLLGSILLFMLGALFAYFIVLPLALK 128 (249)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT------TT--SCCCTTTTHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cc--cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666777777666654 777887322210 00 13456776666665555554443 33211 222
Q ss_pred c---cCCCCC---C--chhHHHHHHHHHHHHHHhhhhccccc-----ccccCcchhHHH-----HHHHhhhhhhhcCC
Q 015980 205 W---YTPDPT---C--LLNIFFITWTLVLLQLMTSVSLHPKI-----NSGFLAPGLMGL-----YIIFLCWCAIRSEP 264 (397)
Q Consensus 205 ~---f~~~~~---C--~lN~~fIt~nliL~vi~svisl~p~v-----~~gLLqssiv~~-----Y~~yLt~SAlss~P 264 (397)
| |++.+- = +.|. .+++.+-+.+...+.--.|-+ +-|++++....- |..-+..+|+.+ |
T Consensus 129 Fl~~~~~~~i~~~~~~~i~~-Yl~fv~~l~l~fGl~FelPvi~~~L~~~Giv~~~~l~~~Rr~~iv~~~v~aAiiT-P 204 (249)
T 4b4a_A 129 FLLGLGFTQLLATPYLSVDM-YISFVLKLVVAFGIAFEMPIVLYVLQKAGVITPEQLASFRKYFIVIAFVIGAIIA-P 204 (249)
T ss_dssp TTTCSSSTTSSSSTTEEHHH-HHHHHHHHHHHHHHHTSHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHC-S
T ss_pred HHHhcchhhhHhhHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHhHHHHHHHHHHHHHHC-C
Confidence 3 333211 1 3344 334444444445555556633 568888776653 555566688776 6
No 8
>3rlb_A THIT; S-component, ECF transporter, ABC transporter, substrate-BIN domain, membrane, thiamine-binding protein; HET: BNG VIB; 2.00A {Lactococcus lactis subsp}
Probab=5.24 E-value=1.1e+03 Score=20.59 Aligned_cols=50 Identities=10% Similarity=0.124 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhccCCCCCC-------chhHHHHHHHHHHHHHHhhh
Q 015980 182 IHVMLIATVAYIICIVGIIMMYIWYTPDPTC-------LLNIFFITWTLVLLQLMTSV 232 (397)
Q Consensus 182 ~~L~~~t~~~y~~si~~~v~my~~f~~~~~C-------~lN~~fIt~nliL~vi~svi 232 (397)
.+.+..+++.|......-+++|--|+|. |= ..|.-++..+.++|.++..+
T Consensus 122 lg~~ig~~~r~~~~~isgvvff~~yaP~-g~~~~~ySl~~N~~~~l~~~ii~~iv~~l 178 (192)
T 3rlb_A 122 LGTFVAVLLKYFFHFIAGIIFWSQYAWK-GWGAVAYSLAVNGISGILTAIAAFVILII 178 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCGGGCCT-TCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcc-cCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888888888877888889874 32 35666666666776666554
No 9
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=4.19 E-value=5.2e+02 Score=16.40 Aligned_cols=15 Identities=20% Similarity=0.802 Sum_probs=13.5
Q ss_pred hhhhhHHHHHHHHHH
Q 015980 364 TWVRIVNEWLAVCVY 378 (397)
Q Consensus 364 ~WVKi~s~W~~~~LY 378 (397)
.|.+-+=.|+|-.||
T Consensus 3 swL~~iwdWvctvLs 17 (31)
T 1r7c_A 3 SWLRDIWDWICEVLS 17 (31)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 589999999999987
No 10
>1dmc_A CD6 metallothionein-1; NMR {Callinectes sapidus} SCOP: g.46.1.1 PDB: 1dmd_A 1j5l_A
Probab=4.13 E-value=3.2e+02 Score=17.22 Aligned_cols=15 Identities=7% Similarity=-0.305 Sum_probs=7.9
Q ss_pred hhhcccccccccccC
Q 015980 12 RAIFKEDSWFSQFRN 26 (397)
Q Consensus 12 ~c~~~~~~~c~~c~~ 26 (397)
-|.-.|.-.|+|||+
T Consensus 17 eC~ktC~KpCsCCP~ 31 (31)
T 1dmc_A 17 ECSKTCTKPCSCCPK 31 (31)
T ss_dssp HHHHHCSSCCSSSCC
T ss_pred HHHhhcCCccccCCC
Confidence 343333345777773
Done!