BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015981
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ASH|A Chain A, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec
2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga
Maritima At 1.90 A Resolution
pdb|2ASH|B Chain B, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec
2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga
Maritima At 1.90 A Resolution
pdb|2ASH|C Chain C, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec
2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga
Maritima At 1.90 A Resolution
pdb|2ASH|D Chain D, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec
2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga
Maritima At 1.90 A Resolution
Length = 381
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 106/390 (27%), Positives = 170/390 (43%), Gaps = 36/390 (9%)
Query: 1 MKFAVKALSSGKARAGV--VHLGSCPSPIETPCLLLSTRKGLPIFIXXXXXXXXXXXXXX 58
M+F VK + GKAR GV +H G+ +P+ P G +
Sbjct: 13 MEFEVKK-TFGKARLGVMKLHHGAVETPVFMPV-------GTNASVKLLTPRDLEEAGAE 64
Query: 59 XXQFSPLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFE 118
+ H P + I GLH +G + LP+ + G F
Sbjct: 65 IILSNTFHLMLKPGVEIIKLHRGLHNFMGWKRPILTDSGGFQVFSLPKI-RIDDEGVVFR 123
Query: 119 TPC--GRRLIKPVEYMEMITSMKPNLWATLADEVPA-WANNKRNKTSVDRTVKW-LDECI 174
+P + + P ME+ ++ ++ D P A+ + K + +RT +W L
Sbjct: 124 SPIDGSKVFLNPEISMEVQIALGSDICMVF-DHCPVPDADYEEVKEATERTYRWALRSKK 182
Query: 175 ARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A A+FG + GG + R+ A ++ GY IGG +GE + +
Sbjct: 183 AFKTENQALFGIVQGGIYPDLRRESALQLTSIGFDGYAIGGLSIGEERSLTLEMTEVTVE 242
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP+D PR G G PE +L+ V GVD+FDS + + G ALT+
Sbjct: 243 FLPEDKPRYFMGGGSPELILELVDRGVDMFDSVFPTRIARHGTALTW------------- 289
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
K+NL+A+ ++ P+ E C CYTC+N T++YI+HL + E+L QILL IH
Sbjct: 290 -------NGKLNLKASYNKRSLEPVDERCGCYTCKNFTRSYIHHLFDRGEVLGQILLTIH 342
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKFVQ 384
N + + + +R +I+ G F++ + K V+
Sbjct: 343 NINFMISLMKEVRRSIESGTFKELKSKVVE 372
>pdb|3UVI|A Chain A, Trna-Guanine Transglycosylase C158s C281s W326e E339q
Mutant
Length = 388
Score = 126 bits (317), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 163/388 (42%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 21 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 72
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 73 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDG 132
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 133 SRHMLSPERSIEIQHLLGSDIVMAFDESTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 192
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG +GE +E +L+
Sbjct: 193 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVP 251
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FDS G A T+
Sbjct: 252 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDSVLPTRSGRNGQAFTWD------------ 299
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ ++L +L+ H
Sbjct: 300 --------GPINIRNARFSEDLKPLDSECHCAVCQKESRAYIHHLIRAGQILGAMLMTEH 351
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 352 NIAFYQQLMQKIRDSISEGRFSQFAQDF 379
>pdb|1WKD|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 163/388 (42%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 19 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 70
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G A + L ++ G +F++
Sbjct: 71 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTASGGYQVMSLSSLTKQSEEGVTFKSHLDG 130
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 131 SRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 190
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG +GE +E +L+
Sbjct: 191 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVP 249
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 250 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 297
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 298 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 349
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 350 NIAFYQQLMQKIRDSISEGRFSQFAQDF 377
>pdb|1WKE|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 124 bits (312), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 98/388 (25%), Positives = 163/388 (42%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 19 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 70
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 71 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDG 130
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ A+ P A R +S++R+++W D +R
Sbjct: 131 SRHMLSPERSIEIQHLLGSDIVMAFAECTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 190
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG +GE +E +L+
Sbjct: 191 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVP 249
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 250 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 297
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 298 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 349
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 350 NIAFYQQLMQKIRDSISEGRFSQFAQDF 377
>pdb|4GD0|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant
pdb|4H7Z|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant In
Complex With Guanine
pdb|4HVX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant In
Complex With Queuine
Length = 386
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 162/388 (41%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 19 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 70
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 71 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKSHLDG 130
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 131 SRHMLSPERSIEIQHLLGSDIVMAFDEVTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 190
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG +GE +E +L+
Sbjct: 191 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVP 249
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 250 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 297
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 298 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 349
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 350 NIAFYQQLMQKIRDSISEGRFSQFAQDF 377
>pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studies Of Zymomonas
Mobilis Trna- Guanine Transglycosylase To Elucidate The
Role Of Serine 103 For Enzymatic Activity
Length = 386
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 162/388 (41%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 19 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 70
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 71 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDAGGYQVMSLSSLTKQSEEGVTFKSHLDG 130
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 131 SRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 190
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG +GE +E +L+
Sbjct: 191 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVP 249
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 250 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 297
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 298 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 349
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 350 NIAFYQQLMQKIRDSISEGRFSQFAQDF 377
>pdb|1Y5V|A Chain A, Trna-guanine Transglycosylase (tgt) In Complex With
6-amino-4-(2-
Phenylethyl)-1,7-dihydro-8h-imidazo[4,
5-g]quinazolin-8-one
pdb|1Y5W|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methylphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|1Y5X|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methoxyphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|1Y5X|D Chain D, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-4-[2-(4-
Methoxyphenyl)ethyl]-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
pdb|2QZR|A Chain A, Trna-Guanine Transglycosylase(Tgt) In Complex With
6-Amino-2-[(1-
Naphthylmethyl)amino]-3,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin-8-One
Length = 385
Score = 122 bits (307), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 162/388 (41%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 18 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 69
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 70 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDG 129
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 130 SRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 189
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG +GE +E +L+
Sbjct: 190 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVP 248
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 249 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 296
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 297 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 348
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 349 NIAFYQQLMQKIRDSISEGRFSQFAQDF 376
>pdb|1ENU|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1F3E|A Chain A, A New Target For Shigellosis: Rational Design And
Crystallographic Studies Of Inhibitors Of Trna-Guanine
Transglycosylase
pdb|1K4G|A Chain A, Crystal Structure Of Trna-guanine Transglycosylase (tgt)
Complexed With
2,
6-diamino-8-(1h-imidazol-2-ylsulfanylmethyl)-3h-
quinazoline-4- One
pdb|1K4H|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
Complexed With
2,6-Diamino-8-Propylsulfanylmethyl-3h-Quinazoline-4-One
pdb|1N2V|A Chain A, Crystal Structure Of Tgt In Complex With
2-Butyl-5,6-Dihydro-1h-
Imidazo[4,5-D]pyridazine-4,7-Dione
pdb|1Q2R|A Chain A, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|B Chain B, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|C Chain C, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2R|D Chain D, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|A Chain A, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|B Chain B, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|C Chain C, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1Q2S|D Chain D, Chemical Trapping And Crystal Structure Of A Catalytic
Trna Guanine Transglycosylase Covalent Intermediate
pdb|1P0B|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis Complexed With Archaeosine
Precursor, Preq0
pdb|1P0D|A Chain A, Crystal Structure Of Zymomonas Mobilis Trna-Guanine
Transglycosylase (Tgt) Crystallised At Ph 5.5
pdb|1P0E|A Chain A, Crystal Structure Of Zymomonas Mobilis Trna-Guanine
Transglycosylase (Tgt) Cocrystallised With Preq1 At Ph
5.5
pdb|1Q4W|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-Diamino-3h-Quinazolin-4- One
pdb|1Q63|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-Diamino-8-(1h-Imidazol-2-
Ylsulfanylmethyl)-3h-Quinazoline-4-One Crystallized At
Ph 5.5
pdb|1Q65|A Chain A, Crystal Structure Of Tgt In Complex With 2,6-Diamino-8-(2-
Dimethylaminoethylsulfanylmethyl)-3h-Quinazolin-4-One
Crystallized At Ph 5.5
pdb|1Q66|A Chain A, Crystal Structure Of Tgt In Complex With
2-Amino-6-Aminomethyl-8-
Phenylsulfanylmethyl-3h-Quinazolin-4-One Crystallized At
Ph 5.5
pdb|1R5Y|A Chain A, Crystal Structure Of Tgt In Complex With
2,6-diamino-3h-quinazolin-4- One Crystallized At Ph 5.5
pdb|1S38|A Chain A, Crystal Structure Of Tgt In Complex With
2-amino-8-methylquinazolin- 4(3h)-one
pdb|1S39|A Chain A, Crystal Structure Of Tgt In Complex With
2-Aminoquinazolin-4(3h)-One
pdb|2BBF|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis In Complex With
6-Amino-3,7-Dihydro-Imidazo[4,5- G]quinazolin-8-One
pdb|2QII|A Chain A, Crystal Structure Of Trna-Guanine Transglycosylase (Tgt)
From Zymomonas Mobilis Complexed With Archaeosine
Precursor, Preq0
pdb|1PUD|A Chain A, Trna-Guanine Transglycosylase
pdb|2PWU|A Chain A, Trna Guanine Transglycosylase In Complex With Guanine
pdb|2Z7K|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
2-Amino-Lin- Benzoguanine
pdb|3C2N|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-(2-
Morpholin-4-Yl-Ethylamino)-1,7-Dihydro-Imidazo[4,
5-G]quinazolin-8-One
pdb|3C2Y|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-Methyl-
1,7-Dihydro-Imidazo[4,5-G]quinazolin-8-One
pdb|3C2Z|A Chain A, Trna-Guanine Transglycosylase (Tgt) In Complex With
6-Amino-2-
[(Thiophen-2-Ylmethyl)-Amino]-1,7-Dihydro-Imidazo[4,
5-G]quinazolin-8- One
pdb|3EOS|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-{2-
[(Cyclohexylmethyl)amino]ethyl}-2-(Methylamino)-1,
7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One
pdb|3EOU|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-(2-
Hydroxyethyl)-2-(Methylamino)-3,7-Dihydro-8h-Imidazo[4,
5- G]quinazolin-8-One
pdb|3GC4|A Chain A, Trna-Guanine Transglycosylase In Complex With Inhibitor
pdb|3GC5|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-(2-
Aminoethyl)-2-(Methylamino)-1,7-Dihydro-8h-Imidazo[4,
5-G]quinazolin- 8-One
pdb|3GE7|A Chain A, Trna-Guanine Transglycosylase In Complex With
6-Amino-4-{2-
[(Cyclopentylmethyl)amino]ethyl}-2-(Methylamino)-1,
7-Dihydro-8h- Imidazo[4,5-G]quinazolin-8-One
pdb|3GEV|A Chain A, Trna-Guanine Transglycosylase In Complex With
2-[(2-Thienylmethyl)
Amino]-1,7-Dihydro-8h-Imidazo[4,5-G]quinazolin-8-One
pdb|3V0Y|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3RR4|A Chain A, Trna-Guanine Transglycosylase In Complex With
N-Methyl-Lin- Benzoguanine Inhibitor
pdb|3S1G|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3SM0|A Chain A, Trna-Guanine Transglycosylase In Complex With
Lin-Benzohypoxanthine Inhibitor
pdb|3TLL|A Chain A, Trna-Guanine Transglycosylase In Complex With
N-Ethyl-Lin-Benzoguanine Inhibitor
Length = 386
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 162/388 (41%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 19 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 70
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 71 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDG 130
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 131 SRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 190
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG +GE +E +L+
Sbjct: 191 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVP 249
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 250 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 297
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 298 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 349
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 350 NIAFYQQLMQKIRDSISEGRFSQFAQDF 377
>pdb|3HFY|A Chain A, Mutant Of Trna-Guanine Transglycosylase (K52m)
Length = 386
Score = 122 bits (306), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 84/326 (25%), Positives = 143/326 (43%), Gaps = 30/326 (9%)
Query: 66 HFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC--GR 123
H P + I+ +GGLH +G + L ++ G +F++ R
Sbjct: 73 HLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDGSR 132
Query: 124 RLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARSPA 179
++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 133 HMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRKEQ 192
Query: 180 G--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNL 236
A+FG I GS E R++ A +A GY +GG +GE +E +L+ L
Sbjct: 193 AENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVPML 251
Query: 237 PKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLS 296
P D P + G+G P++++ V G+D+FD G A T+
Sbjct: 252 PDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD-------------- 297
Query: 297 DQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNT 356
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ HN
Sbjct: 298 ------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNI 351
Query: 357 HHYLGFFRSIREAIKEGCFEQFQKKF 382
Y + IR++I EG F QF + F
Sbjct: 352 AFYQQLMQKIRDSISEGRFSQFAQDF 377
>pdb|1OZM|A Chain A, Y106f Mutant Of Z. Mobilis Tgt
pdb|1OZQ|A Chain A, Crystal Structure Of The Mutated Trna-Guanine
Transglycosylase (Tgt) Y106f Complexed With Preq1
Length = 386
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 162/388 (41%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 19 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 70
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 71 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKSHLDG 130
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 131 SRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 190
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG +GE +E +L+
Sbjct: 191 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVP 249
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 250 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 297
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 298 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 349
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 350 NIAFYQQLMQKIRDSISEGRFSQFAQDF 377
>pdb|1WKF|A Chain A, Trna-Guanine Transglycosylase
Length = 386
Score = 122 bits (306), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 162/388 (41%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 19 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 70
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 71 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDG 130
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 131 SRHMLSPERSIEIQHLLGSDIVMAFYECTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 190
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG +GE +E +L+
Sbjct: 191 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVP 249
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 250 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 297
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 298 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 349
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 350 NIAFYQQLMQKIRDSISEGRFSQFAQDF 377
>pdb|4GCX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
In Complex With Preq1
pdb|4H6E|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
Apo Structure
Length = 386
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 161/388 (41%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 19 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 70
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 71 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKSHLDG 130
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 131 SRHMLSPERSIEIQHLLGSDIVMAFDEVTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 190
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG GE +E +L+
Sbjct: 191 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAGGEGQDEMFRVLDFSVP 249
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 250 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 297
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 298 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 349
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 350 NIAFYQQLMQKIRDSISEGRFSQFAQDF 377
>pdb|4HQV|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant
In Complex With Queuine
Length = 385
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 161/388 (41%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 18 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 69
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 70 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKSHLDG 129
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 130 SRHMLSPERSIEIQHLLGSDIVMAFDEVTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 189
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG GE +E +L+
Sbjct: 190 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAGGEGQDEMFRVLDFSVP 248
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 249 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 296
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 297 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 348
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 349 NIAFYQQLMQKIRDSISEGRFSQFAQDF 376
>pdb|3UNT|A Chain A, Trna-Guanine Transglycosylase E339q Mutant
Length = 388
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 162/388 (41%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 21 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 72
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 73 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDG 132
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 133 SRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 192
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG +GE +E +L+
Sbjct: 193 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVP 251
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 252 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 299
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ ++L +L+ H
Sbjct: 300 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGQILGAMLMTEH 351
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 352 NIAFYQQLMQKIRDSISEGRFSQFAQDF 379
>pdb|2NSO|A Chain A, Trna-Gunanine-Transglycosylase (Tgt) Mutant Y106f, C158v,
A232s, V233g- Apo-Structure
pdb|3BLL|A Chain A, Tgt Mutant In Complex With Boc-Preq1
pdb|3BLO|A Chain A, Tgt Mutant In Complex With Queuine
Length = 386
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 161/388 (41%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 19 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 70
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 71 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKSHLDG 130
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 131 SRHMLSPERSIEIQHLLGSDIVMAFDEVTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 190
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG GE +E +L+
Sbjct: 191 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLSGGEGQDEMFRVLDFSVP 249
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 250 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 297
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 298 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 349
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 350 NIAFYQQLMQKIRDSISEGRFSQFAQDF 377
>pdb|2OKO|A Chain A, Z. Mobilis Trna Guanine Transglycosylase E235q Mutant
Apo-Structure At Ph 5.5
Length = 385
Score = 121 bits (303), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 162/388 (41%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 18 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 69
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 70 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDG 129
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 130 SRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 189
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG +G+ +E +L+
Sbjct: 190 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGQGQDEMFRVLDFSVP 248
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 249 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 296
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 297 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 348
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 349 NIAFYQQLMQKIRDSISEGRFSQFAQDF 376
>pdb|2NQZ|A Chain A, Trna-Guanine Transglycosylase (Tgt) Mutant In Complex With
7-Deaza-7- Aminomethyl-Guanine
Length = 385
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 161/388 (41%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 18 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 69
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 70 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKSHLDG 129
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 130 SRHMLSPERSIEIQHLLGSDIVMAFDEVTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 189
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG GE +E +L+
Sbjct: 190 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLSGGEGQDEMFRVLDFSVP 248
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 249 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 296
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 297 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 348
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 349 NIAFYQQLMQKIRDSISEGRFSQFAQDF 376
>pdb|2POT|A Chain A, Trna Guanine Transglycosylase (Tgt) E235q Mutant In
Complex With Guanine
pdb|2PWV|A Chain A, Trna Guanine Transglycosylase E235q Mutant In Complex With
Preq0
pdb|2Z1V|A Chain A, Trna Guanine Transglycosylase E235q Mutant Apo Structure,
Ph 8.5
pdb|2Z1W|A Chain A, Trna Guanine Transglycosylase Tgt E235q Mutant In Complex
With Bdi (2-
Butyl-5,6-Dihydro-1h-Imidazo[4,5-D]pyridazine-4,7-Dione)
pdb|2Z1X|A Chain A, Trna Guanine Transglycosylase E235q Mutant In Complex With
Preq1
Length = 386
Score = 121 bits (303), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 162/388 (41%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 19 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 70
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 71 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDG 130
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 131 SRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 190
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG +G+ +E +L+
Sbjct: 191 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGQGQDEMFRVLDFSVP 249
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 250 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 297
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 298 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 349
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 350 NIAFYQQLMQKIRDSISEGRFSQFAQDF 377
>pdb|3BL3|A Chain A, Trna Guanine Transglycosylase V233g Mutant Apo Structure
pdb|3BLD|A Chain A, Trna Guanine Transglycosylase V233g Mutant Preq1 Complex
Structure
Length = 386
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 161/388 (41%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 19 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 70
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 71 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKSHLDG 130
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 131 SRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 190
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG GE +E +L+
Sbjct: 191 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAGGEGQDEMFRVLDFSVP 249
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 250 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 297
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 298 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 349
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 350 NIAFYQQLMQKIRDSISEGRFSQFAQDF 377
>pdb|1PXG|A Chain A, Crystal Structure Of The Mutated Trna-Guanine
Transglycosylase (Tgt) D280e Complexed With Preq1
Length = 382
Score = 120 bits (302), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 96/388 (24%), Positives = 162/388 (41%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 18 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 69
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPC-- 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 70 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDG 129
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 130 SRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 189
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG +GE +E +L+
Sbjct: 190 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFSVP 248
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+F+ G A T+
Sbjct: 249 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFECVLPTRSGRNGQAFTWD------------ 296
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 297 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 348
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 349 NIAFYQQLMQKIRDSISEGRFSQFAQDF 376
>pdb|4HSH|A Chain A, Trna-Guanine Transglycosylase Y106f, V233g Mutant In
Complex With Queuine
Length = 385
Score = 120 bits (301), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 97/388 (25%), Positives = 161/388 (41%), Gaps = 41/388 (10%)
Query: 7 ALSSGKARAGVVHL--GSCPSPIETPCLLLSTRKGL-PIFIXXXXXXXXXXXXXXXXQFS 63
A GKAR G + + G +P P +T K L P + +
Sbjct: 18 AAREGKARTGTIEMKRGVIRTPAFMPVGTAATVKALKPETVRATGADIILG--------N 69
Query: 64 PLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFET--PC 121
H P + I+ +GGLH +G + L ++ G +F++
Sbjct: 70 TYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGFQVMSLSSLTKQSEEGVTFKSHLDG 129
Query: 122 GRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWL----DECIARS 177
R ++ P +E+ + ++ + P A R +S++R+++W D +R
Sbjct: 130 SRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFDSRK 189
Query: 178 PAG--GAVFGSIVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
A+FG I GS E R++ A +A GY +GG GE +E +L+
Sbjct: 190 EQAENAALFG-IQQGSVFENLRQQSADALAEIGFDGYAVGGLAGGEGQDEMFRVLDFSVP 248
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
LP D P + G+G P++++ V G+D+FD G A T+
Sbjct: 249 MLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTWD------------ 296
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
IN+R + +D P+ +C C CQ ++AYI+HL+ E+L +L+ H
Sbjct: 297 --------GPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEH 348
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKF 382
N Y + IR++I EG F QF + F
Sbjct: 349 NIAFYQQLMQKIRDSISEGRFSQFAQDF 376
>pdb|1IQ8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii
pdb|1IQ8|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii
pdb|1IT7|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase Complexed With Guanine
pdb|1IT7|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase Complexed With Guanine
pdb|1IT8|A Chain A, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii Complexed
With Archaeosine Precursor, Preq0
pdb|1IT8|B Chain B, Crystal Structure Of Archaeosine Trna-Guanine
Transglycosylase From Pyrococcus Horikoshii Complexed
With Archaeosine Precursor, Preq0
pdb|1J2B|A Chain A, Crystal Structure Of Archaeosine Trna-guanine
Transglycosylase Complexed With Lambda-form Trna(val)
pdb|1J2B|B Chain B, Crystal Structure Of Archaeosine Trna-guanine
Transglycosylase Complexed With Lambda-form Trna(val)
Length = 582
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 49/192 (25%), Positives = 74/192 (38%), Gaps = 34/192 (17%)
Query: 185 GSIVGGSNIEERKRCAQEVAVRNVSGYWIGGF-GLGESMEERPSLLNAVTDN--LPKDWP 241
+I G + + R+ A+ ++ N + IGG L ES R + ++ L D P
Sbjct: 166 ATIQGSTYTDLRRYAARRLSSMNFEIHPIGGVVPLLESYRFRDVVDIVISSKMALRPDRP 225
Query: 242 RMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSD 301
+ G G P VA GVDLFDSA +AL DR ++ +G+
Sbjct: 226 VHLFGAGHPIVFALAVAMGVDLFDSA--------SYALYAKDDRY--------MTPEGTK 269
Query: 302 RTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLG 361
R D P C C C +T + + LL +HN
Sbjct: 270 RLD--------ELDYFP----CSCPVCSKYTPQELREMPKEERTR---LLALHNLWVIKE 314
Query: 362 FFRSIREAIKEG 373
+ +++AIKEG
Sbjct: 315 EIKRVKQAIKEG 326
>pdb|4DRW|A Chain A, Crystal Structure Of The Ternary Complex Between S100a10,
An Annexin A2 N-Terminal Peptide And An Ahnak Peptide
pdb|4DRW|B Chain B, Crystal Structure Of The Ternary Complex Between S100a10,
An Annexin A2 N-Terminal Peptide And An Ahnak Peptide
pdb|4DRW|C Chain C, Crystal Structure Of The Ternary Complex Between S100a10,
An Annexin A2 N-Terminal Peptide And An Ahnak Peptide
pdb|4DRW|D Chain D, Crystal Structure Of The Ternary Complex Between S100a10,
An Annexin A2 N-Terminal Peptide And An Ahnak Peptide
Length = 121
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 139 KPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNI 193
K +L + E P + N+++ +VD+ +K LD+C G F S++ G I
Sbjct: 33 KEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQC-RDGKVGFQSFFSLIAGLTI 86
>pdb|1A4P|A Chain A, P11 (s100a10), Ligand Of Annexin Ii
pdb|1A4P|B Chain B, P11 (s100a10), Ligand Of Annexin Ii
pdb|1BT6|A Chain A, P11 (S100a10), Ligand Of Annexin Ii In Complex With
Annexin Ii N-Terminus
pdb|1BT6|B Chain B, P11 (S100a10), Ligand Of Annexin Ii In Complex With
Annexin Ii N-Terminus
pdb|4FTG|A Chain A, The Crystal Structure Of An Ahnak Peptide In Complex With
The S100a10/anxa2 Heterotetramer
pdb|4FTG|B Chain B, The Crystal Structure Of An Ahnak Peptide In Complex With
The S100a10/anxa2 Heterotetramer
Length = 96
Score = 29.6 bits (65), Expect = 3.2, Method: Composition-based stats.
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 139 KPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNI 193
K +L + E P + N+++ +VD+ +K LD+C G F S++ G I
Sbjct: 27 KEDLRVLMEKEFPGFLENQKDPLAVDKIMKDLDQC-RDGKVGFQSFFSLIAGLTI 80
>pdb|1LTX|R Chain R, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 650
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 232 VTDNLPKDWPRMICGLGLPEEVL 254
+ DNLP D+ ++ G GLPE ++
Sbjct: 1 MADNLPSDFDVIVIGTGLPESII 23
>pdb|1VG0|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG9|A Chain A, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|C Chain C, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|E Chain E, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|G Chain G, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 650
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 232 VTDNLPKDWPRMICGLGLPEEVL 254
+ DNLP D+ ++ G GLPE ++
Sbjct: 1 MADNLPSDFDVIVIGTGLPESII 23
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,380,645
Number of Sequences: 62578
Number of extensions: 458785
Number of successful extensions: 1067
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 982
Number of HSP's gapped (non-prelim): 47
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)