Query 015981
Match_columns 397
No_of_seqs 166 out of 1188
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 02:42:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015981.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015981hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00430 Q_tRNA_tgt tRNA-guan 100.0 2E-103 5E-108 780.1 34.8 361 3-389 1-366 (368)
2 PRK00112 tgt queuine tRNA-ribo 100.0 3E-103 7E-108 779.3 35.1 358 1-384 3-365 (366)
3 COG0343 Tgt Queuine/archaeosin 100.0 1E-103 3E-108 764.2 31.2 361 3-389 1-365 (372)
4 TIGR00449 tgt_general tRNA-gua 100.0 1E-102 2E-107 775.7 34.2 360 3-388 1-364 (367)
5 PRK01008 queuine tRNA-ribosylt 100.0 3E-102 6E-107 767.7 30.6 344 1-374 3-371 (372)
6 KOG3908 Queuine-tRNA ribosyltr 100.0 2.4E-97 5E-102 687.0 17.1 362 1-388 8-374 (396)
7 PRK13533 7-cyano-7-deazaguanin 100.0 2E-84 4.4E-89 661.8 31.8 328 1-385 3-334 (487)
8 PRK13534 7-cyano-7-deazaguanin 100.0 9.8E-83 2.1E-87 668.4 32.0 328 3-386 2-332 (639)
9 KOG3909 Queuine-tRNA ribosyltr 100.0 5.1E-75 1.1E-79 548.0 25.3 376 1-386 1-384 (414)
10 PF01702 TGT: Queuine tRNA-rib 100.0 3.5E-68 7.6E-73 502.8 24.7 236 129-384 1-238 (238)
11 TIGR00432 arcsn_tRNA_tgt tRNA- 100.0 1.3E-57 2.9E-62 468.8 25.2 229 130-387 2-234 (540)
12 PHA01745 hypothetical protein 98.5 4.1E-07 8.8E-12 85.3 8.7 164 86-281 31-197 (306)
13 COG1549 Queuine tRNA-ribosyltr 98.3 1.2E-06 2.5E-11 88.9 5.8 88 234-383 92-179 (519)
14 PRK12330 oxaloacetate decarbox 95.7 0.28 6.2E-06 51.3 14.6 127 129-269 100-234 (499)
15 cd03174 DRE_TIM_metallolyase D 95.1 0.27 5.9E-06 46.6 11.6 141 129-271 77-226 (265)
16 COG5016 Pyruvate/oxaloacetate 94.7 0.49 1.1E-05 47.7 12.3 124 128-268 100-232 (472)
17 PF00682 HMGL-like: HMGL-like 94.2 0.2 4.4E-06 47.0 8.2 135 128-270 69-216 (237)
18 PRK05692 hydroxymethylglutaryl 94.0 0.41 8.9E-06 46.7 9.9 82 186-268 147-232 (287)
19 cd07938 DRE_TIM_HMGL 3-hydroxy 94.0 0.45 9.7E-06 46.1 10.1 80 188-268 143-226 (274)
20 cd07941 DRE_TIM_LeuA3 Desulfob 93.9 0.56 1.2E-05 45.3 10.8 147 129-277 81-237 (273)
21 PLN02746 hydroxymethylglutaryl 93.0 0.86 1.9E-05 45.6 10.6 80 188-268 191-274 (347)
22 PRK14041 oxaloacetate decarbox 93.0 1.7 3.7E-05 45.3 13.1 124 130-269 99-230 (467)
23 cd07939 DRE_TIM_NifV Streptomy 92.9 1 2.2E-05 43.0 10.7 86 183-270 127-217 (259)
24 cd07940 DRE_TIM_IPMS 2-isoprop 92.9 1.3 2.8E-05 42.6 11.4 87 183-269 131-223 (268)
25 CHL00200 trpA tryptophan synth 92.8 2.7 5.9E-05 40.4 13.4 41 225-267 190-231 (263)
26 PRK05286 dihydroorotate dehydr 92.5 2.4 5.2E-05 42.4 13.1 142 125-267 153-318 (344)
27 cd04738 DHOD_2_like Dihydrooro 92.5 3.2 6.9E-05 41.2 13.8 142 127-269 146-311 (327)
28 PRK14042 pyruvate carboxylase 92.4 1.7 3.8E-05 46.6 12.4 126 129-270 99-232 (596)
29 cd07945 DRE_TIM_CMS Leptospira 92.0 2.3 5E-05 41.3 11.9 79 191-270 144-226 (280)
30 PRK09282 pyruvate carboxylase 92.0 2.9 6.2E-05 45.0 13.6 126 128-269 98-231 (592)
31 cd07948 DRE_TIM_HCS Saccharomy 91.9 1.7 3.8E-05 41.7 10.8 86 191-278 138-227 (262)
32 PRK08195 4-hyroxy-2-oxovalerat 91.7 4.1 8.9E-05 40.6 13.5 91 188-278 138-232 (337)
33 TIGR01108 oadA oxaloacetate de 91.6 2.6 5.6E-05 45.3 12.7 131 129-276 94-233 (582)
34 PRK12331 oxaloacetate decarbox 91.5 3.4 7.3E-05 42.9 13.1 127 129-269 99-231 (448)
35 cd00952 CHBPH_aldolase Trans-o 91.1 0.88 1.9E-05 44.8 8.1 81 188-270 23-113 (309)
36 PRK14040 oxaloacetate decarbox 91.1 4 8.8E-05 43.9 13.6 125 129-270 100-233 (593)
37 PLN02417 dihydrodipicolinate s 90.7 1.2 2.7E-05 43.0 8.6 81 188-270 16-106 (280)
38 PLN02591 tryptophan synthase 90.3 8.2 0.00018 36.9 13.5 43 223-267 175-218 (250)
39 PRK07259 dihydroorotate dehydr 90.3 2.9 6.4E-05 40.7 10.9 83 182-267 93-189 (301)
40 cd02810 DHOD_DHPD_FMN Dihydroo 90.2 6.1 0.00013 38.1 12.9 86 183-268 165-273 (289)
41 PRK12581 oxaloacetate decarbox 90.1 3.4 7.5E-05 43.0 11.6 124 129-269 108-240 (468)
42 cd07937 DRE_TIM_PC_TC_5S Pyruv 89.9 6 0.00013 38.2 12.6 80 189-270 144-227 (275)
43 PRK03170 dihydrodipicolinate s 89.5 1.8 3.9E-05 42.0 8.7 81 188-270 16-106 (292)
44 PRK04147 N-acetylneuraminate l 89.0 2.1 4.6E-05 41.6 8.7 80 189-270 19-109 (293)
45 PRK12999 pyruvate carboxylase; 88.7 5.8 0.00012 46.1 13.1 84 191-276 688-775 (1146)
46 cd00954 NAL N-Acetylneuraminic 88.5 2.2 4.8E-05 41.4 8.5 80 189-270 16-106 (288)
47 cd04740 DHOD_1B_like Dihydroor 88.5 5.3 0.00011 38.8 11.2 82 182-266 91-185 (296)
48 cd00945 Aldolase_Class_I Class 88.3 1.7 3.8E-05 38.8 7.2 76 184-270 3-88 (201)
49 TIGR01036 pyrD_sub2 dihydrooro 88.2 12 0.00025 37.4 13.5 141 125-267 150-317 (335)
50 cd00950 DHDPS Dihydrodipicolin 88.2 2.7 5.8E-05 40.6 8.8 81 188-270 15-105 (284)
51 TIGR02313 HpaI-NOT-DapA 2,4-di 88.1 2.4 5.3E-05 41.3 8.5 80 189-270 16-105 (294)
52 TIGR00674 dapA dihydrodipicoli 88.1 2.5 5.4E-05 41.0 8.5 81 188-270 13-103 (285)
53 PLN02826 dihydroorotate dehydr 88.0 25 0.00053 36.2 16.0 139 127-267 202-370 (409)
54 TIGR00262 trpA tryptophan synt 87.9 13 0.00027 35.7 13.1 42 224-267 185-227 (256)
55 cd07944 DRE_TIM_HOA_like 4-hyd 87.8 2.7 5.8E-05 40.5 8.4 82 189-270 133-218 (266)
56 TIGR02090 LEU1_arch isopropylm 87.6 5.5 0.00012 40.2 10.9 80 189-270 136-219 (363)
57 cd00331 IGPS Indole-3-glycerol 86.8 7.5 0.00016 35.9 10.6 119 127-267 82-201 (217)
58 cd00408 DHDPS-like Dihydrodipi 86.7 3.3 7.2E-05 39.8 8.5 81 188-270 12-102 (281)
59 TIGR03249 KdgD 5-dehydro-4-deo 86.6 3.2 6.9E-05 40.5 8.4 80 189-270 21-109 (296)
60 TIGR00683 nanA N-acetylneurami 86.3 3.4 7.4E-05 40.2 8.4 81 188-270 15-106 (290)
61 TIGR02660 nifV_homocitr homoci 86.0 7.1 0.00015 39.3 10.8 86 183-270 130-220 (365)
62 PRK11858 aksA trans-homoaconit 86.0 6.8 0.00015 39.7 10.6 93 183-277 133-230 (378)
63 PF00701 DHDPS: Dihydrodipicol 85.9 1.9 4.2E-05 41.7 6.4 79 189-269 17-105 (289)
64 TIGR01306 GMP_reduct_2 guanosi 85.9 6 0.00013 39.2 9.8 94 164-270 125-230 (321)
65 cd02809 alpha_hydroxyacid_oxid 85.7 9.4 0.0002 37.3 11.1 74 198-272 184-261 (299)
66 cd07943 DRE_TIM_HOA 4-hydroxy- 85.5 5.4 0.00012 38.1 9.2 127 130-270 89-220 (263)
67 TIGR01235 pyruv_carbox pyruvat 85.3 2.4 5.3E-05 49.0 7.7 77 191-269 686-766 (1143)
68 PRK03620 5-dehydro-4-deoxygluc 85.0 4.6 0.0001 39.5 8.6 80 189-270 23-111 (303)
69 PF00290 Trp_syntA: Tryptophan 84.0 15 0.00033 35.2 11.4 41 223-266 184-225 (259)
70 TIGR03217 4OH_2_O_val_ald 4-hy 83.7 18 0.0004 36.0 12.3 134 130-278 91-231 (333)
71 cd04740 DHOD_1B_like Dihydroor 83.4 33 0.00072 33.2 13.9 41 226-268 220-261 (296)
72 cd04741 DHOD_1A_like Dihydroor 83.2 34 0.00074 33.3 13.8 135 128-268 102-273 (294)
73 cd00951 KDGDH 5-dehydro-4-deox 82.8 6.8 0.00015 38.0 8.7 80 189-270 16-104 (289)
74 cd00953 KDG_aldolase KDG (2-ke 82.8 5.4 0.00012 38.6 8.0 77 189-270 15-101 (279)
75 PLN02535 glycolate oxidase 82.8 5.2 0.00011 40.4 8.0 74 198-272 235-312 (364)
76 PRK11197 lldD L-lactate dehydr 82.6 4.4 9.5E-05 41.1 7.5 76 196-272 255-334 (381)
77 COG0329 DapA Dihydrodipicolina 82.2 5.8 0.00013 38.9 8.0 80 188-269 19-108 (299)
78 PF01070 FMN_dh: FMN-dependent 82.1 3.3 7.1E-05 41.7 6.4 78 195-273 234-315 (356)
79 cd03332 LMO_FMN L-Lactate 2-mo 81.5 6.6 0.00014 39.9 8.3 75 197-271 264-341 (383)
80 cd02071 MM_CoA_mut_B12_BD meth 81.3 8 0.00017 32.4 7.6 66 198-264 41-106 (122)
81 PLN02493 probable peroxisomal 80.8 7.5 0.00016 39.3 8.3 75 197-272 235-313 (367)
82 PLN02979 glycolate oxidase 80.4 7.9 0.00017 39.0 8.3 75 197-272 234-312 (366)
83 cd02811 IDI-2_FMN Isopentenyl- 79.9 35 0.00076 33.8 12.7 138 125-272 126-289 (326)
84 PRK05437 isopentenyl pyrophosp 79.6 57 0.0012 32.7 14.2 138 125-273 134-296 (352)
85 PRK06843 inosine 5-monophospha 79.0 34 0.00075 35.0 12.5 69 197-268 155-223 (404)
86 PRK13125 trpA tryptophan synth 78.9 59 0.0013 30.7 14.6 123 125-267 87-214 (244)
87 COG2089 SpsE Sialic acid synth 77.9 5.7 0.00012 39.2 6.2 90 155-258 77-167 (347)
88 cd07947 DRE_TIM_Re_CS Clostrid 77.7 23 0.0005 34.4 10.4 87 183-269 131-237 (279)
89 PRK12344 putative alpha-isopro 77.6 18 0.00038 38.5 10.3 139 128-269 87-235 (524)
90 cd02940 DHPD_FMN Dihydropyrimi 77.2 37 0.0008 33.1 11.9 85 181-267 100-200 (299)
91 PRK05458 guanosine 5'-monophos 76.6 23 0.00051 35.2 10.3 124 124-268 92-231 (326)
92 PRK07259 dihydroorotate dehydr 76.6 61 0.0013 31.5 13.2 41 226-268 223-264 (301)
93 TIGR01037 pyrD_sub1_fam dihydr 75.8 69 0.0015 31.0 13.4 132 126-267 100-263 (300)
94 COG0800 Eda 2-keto-3-deoxy-6-p 75.7 29 0.00063 32.3 9.9 77 181-267 13-92 (211)
95 PRK00915 2-isopropylmalate syn 75.5 24 0.00051 37.4 10.6 133 131-269 84-230 (513)
96 PLN02495 oxidoreductase, actin 75.2 24 0.00051 36.0 10.1 84 182-267 115-214 (385)
97 TIGR02708 L_lactate_ox L-lacta 74.2 21 0.00046 36.1 9.4 76 197-273 239-318 (367)
98 cd02940 DHPD_FMN Dihydropyrimi 74.2 25 0.00054 34.3 9.8 41 226-266 239-280 (299)
99 TIGR00737 nifR3_yhdG putative 74.0 37 0.0008 33.4 11.0 129 126-267 18-167 (319)
100 cd02810 DHOD_DHPD_FMN Dihydroo 73.6 47 0.001 31.9 11.5 82 183-267 101-196 (289)
101 cd04736 MDH_FMN Mandelate dehy 73.2 15 0.00033 37.0 8.1 72 198-272 248-323 (361)
102 TIGR02151 IPP_isom_2 isopenten 72.5 43 0.00094 33.3 11.1 133 128-271 130-287 (333)
103 PRK08185 hypothetical protein; 72.3 59 0.0013 31.7 11.7 129 127-265 80-226 (283)
104 cd00429 RPE Ribulose-5-phospha 72.1 58 0.0013 29.3 11.2 122 127-269 68-196 (211)
105 PRK00278 trpC indole-3-glycero 71.4 71 0.0015 30.5 12.0 121 125-267 119-240 (260)
106 PF01180 DHO_dh: Dihydroorotat 71.2 48 0.001 32.1 11.0 135 127-269 110-275 (295)
107 TIGR01305 GMP_reduct_1 guanosi 70.7 42 0.00091 33.5 10.3 61 201-265 113-176 (343)
108 cd02922 FCB2_FMN Flavocytochro 70.2 94 0.002 31.1 12.9 76 197-273 224-306 (344)
109 TIGR00640 acid_CoA_mut_C methy 69.6 24 0.00052 30.2 7.5 82 183-267 30-112 (132)
110 PRK09389 (R)-citramalate synth 69.6 43 0.00094 35.2 10.8 131 132-270 79-221 (488)
111 PRK05835 fructose-bisphosphate 68.9 67 0.0014 31.7 11.3 116 127-252 86-218 (307)
112 cd02809 alpha_hydroxyacid_oxid 68.8 30 0.00065 33.7 9.0 117 129-267 84-200 (299)
113 TIGR03147 cyt_nit_nrfF cytochr 68.3 8.1 0.00018 33.0 4.2 51 319-387 37-87 (126)
114 PRK08883 ribulose-phosphate 3- 68.2 73 0.0016 29.7 11.0 119 127-267 69-195 (220)
115 cd04737 LOX_like_FMN L-Lactate 68.2 32 0.0007 34.6 9.1 74 198-272 233-310 (351)
116 PLN02334 ribulose-phosphate 3- 68.1 65 0.0014 30.0 10.8 122 127-268 76-203 (229)
117 PLN03228 methylthioalkylmalate 68.1 44 0.00096 35.3 10.5 79 191-269 236-320 (503)
118 TIGR00973 leuA_bact 2-isopropy 67.3 47 0.001 35.0 10.6 110 155-269 111-227 (494)
119 COG1856 Uncharacterized homolo 67.1 1.2E+02 0.0025 28.8 12.3 143 113-265 87-250 (275)
120 TIGR00977 LeuA_rel 2-isopropyl 66.5 62 0.0013 34.4 11.3 137 126-269 81-232 (526)
121 COG0134 TrpC Indole-3-glycerol 66.3 1.3E+02 0.0027 28.9 13.5 41 227-267 195-236 (254)
122 KOG2368 Hydroxymethylglutaryl- 66.0 31 0.00067 32.5 7.7 83 185-268 160-246 (316)
123 PRK10144 formate-dependent nit 65.9 9.6 0.00021 32.5 4.1 50 320-387 38-87 (126)
124 PRK07114 keto-hydroxyglutarate 65.3 44 0.00096 31.3 8.9 80 182-267 16-98 (222)
125 COG1038 PycA Pyruvate carboxyl 65.0 12 0.00026 41.3 5.6 78 191-270 691-772 (1149)
126 PF04131 NanE: Putative N-acet 64.9 26 0.00056 32.1 6.9 81 182-268 34-120 (192)
127 PRK01130 N-acetylmannosamine-6 64.6 1E+02 0.0023 28.3 11.4 65 201-267 133-202 (221)
128 PRK05458 guanosine 5'-monophos 64.4 67 0.0015 32.0 10.4 64 200-267 102-168 (326)
129 PF12167 DUF3596: Domain of un 63.1 8.5 0.00018 28.7 3.0 30 352-382 31-60 (64)
130 cd00331 IGPS Indole-3-glycerol 63.0 98 0.0021 28.3 10.8 118 124-265 29-146 (217)
131 cd01572 QPRTase Quinolinate ph 62.8 19 0.00042 34.7 6.2 61 203-271 198-258 (268)
132 cd07942 DRE_TIM_LeuA Mycobacte 62.7 77 0.0017 30.8 10.4 77 191-267 153-241 (284)
133 TIGR01305 GMP_reduct_1 guanosi 60.7 97 0.0021 31.0 10.6 68 198-267 162-241 (343)
134 PF03102 NeuB: NeuB family; I 60.5 34 0.00073 32.5 7.3 89 155-258 43-133 (241)
135 PRK05742 nicotinate-nucleotide 60.4 28 0.0006 33.8 6.8 63 203-273 205-267 (277)
136 TIGR01303 IMP_DH_rel_1 IMP deh 60.3 32 0.0007 36.0 7.7 63 199-265 229-292 (475)
137 TIGR01306 GMP_reduct_2 guanosi 60.1 97 0.0021 30.8 10.6 80 183-267 83-165 (321)
138 PLN02321 2-isopropylmalate syn 59.0 72 0.0016 34.7 10.3 87 183-269 228-321 (632)
139 PRK10415 tRNA-dihydrouridine s 58.7 1.9E+02 0.0041 28.5 13.5 84 183-268 136-225 (321)
140 PRK08610 fructose-bisphosphate 58.5 1.1E+02 0.0024 29.8 10.6 131 127-267 89-233 (286)
141 TIGR01501 MthylAspMutase methy 58.4 1E+02 0.0022 26.6 9.2 22 124-145 37-58 (134)
142 PF09370 TIM-br_sig_trns: TIM- 58.3 61 0.0013 31.2 8.5 83 125-215 157-246 (268)
143 PLN02274 inosine-5'-monophosph 57.6 38 0.00082 35.8 7.8 78 183-265 238-315 (505)
144 PRK10550 tRNA-dihydrouridine s 57.5 1.7E+02 0.0036 28.9 11.9 135 126-267 11-168 (312)
145 TIGR03569 NeuB_NnaB N-acetylne 57.2 53 0.0011 32.7 8.3 87 157-258 65-153 (329)
146 PRK08318 dihydropyrimidine deh 56.9 1.1E+02 0.0024 31.2 11.0 82 182-265 101-198 (420)
147 TIGR00167 cbbA ketose-bisphosp 56.8 1.6E+02 0.0034 28.8 11.3 131 127-267 89-236 (288)
148 cd08205 RuBisCO_IV_RLP Ribulos 56.7 35 0.00076 34.5 7.1 82 188-270 140-233 (367)
149 TIGR01858 tag_bisphos_ald clas 56.3 1.7E+02 0.0036 28.6 11.4 131 127-267 84-230 (282)
150 COG0119 LeuA Isopropylmalate/h 55.9 1.5E+02 0.0032 30.6 11.5 137 131-268 81-224 (409)
151 PRK06106 nicotinate-nucleotide 55.8 36 0.00077 33.2 6.7 62 203-272 210-271 (281)
152 cd04730 NPD_like 2-Nitropropan 55.7 36 0.00077 31.5 6.6 115 127-269 68-187 (236)
153 TIGR01037 pyrD_sub1_fam dihydr 55.6 1.3E+02 0.0029 29.0 10.9 83 182-267 92-189 (300)
154 PRK08195 4-hyroxy-2-oxovalerat 55.5 54 0.0012 32.7 8.1 77 191-267 22-108 (337)
155 TIGR03586 PseI pseudaminic aci 55.4 60 0.0013 32.3 8.4 88 156-258 65-154 (327)
156 PRK02506 dihydroorotate dehydr 55.1 2.1E+02 0.0045 28.1 12.1 43 226-268 228-271 (310)
157 PRK07455 keto-hydroxyglutarate 55.1 37 0.0008 30.8 6.4 56 202-270 79-134 (187)
158 cd02072 Glm_B12_BD B12 binding 54.9 94 0.002 26.5 8.4 75 124-211 35-112 (128)
159 COG2185 Sbm Methylmalonyl-CoA 54.8 86 0.0019 27.4 8.2 82 183-266 40-121 (143)
160 PRK05848 nicotinate-nucleotide 54.5 38 0.00082 32.8 6.6 65 202-271 197-261 (273)
161 PF05690 ThiG: Thiazole biosyn 53.4 22 0.00048 33.7 4.6 120 127-265 74-202 (247)
162 PRK07315 fructose-bisphosphate 53.3 2E+02 0.0043 28.1 11.5 63 205-268 164-233 (293)
163 TIGR03217 4OH_2_O_val_ald 4-hy 53.2 60 0.0013 32.3 8.0 77 191-267 21-107 (333)
164 PRK08091 ribulose-phosphate 3- 53.1 2E+02 0.0044 27.1 11.3 119 127-267 79-207 (228)
165 cd00452 KDPG_aldolase KDPG and 53.1 50 0.0011 29.8 6.9 57 200-269 69-125 (190)
166 PF01729 QRPTase_C: Quinolinat 53.1 31 0.00067 30.9 5.4 67 202-273 95-161 (169)
167 PRK07896 nicotinate-nucleotide 52.6 47 0.001 32.5 7.0 66 202-272 214-279 (289)
168 TIGR00078 nadC nicotinate-nucl 52.1 45 0.00099 32.1 6.7 64 202-273 193-256 (265)
169 cd02801 DUS_like_FMN Dihydrour 51.9 1.9E+02 0.0041 26.4 11.1 130 125-267 9-158 (231)
170 PRK05096 guanosine 5'-monophos 51.8 1.6E+02 0.0034 29.6 10.5 57 206-265 121-177 (346)
171 PRK14057 epimerase; Provisiona 50.9 2.3E+02 0.0051 27.1 11.6 126 127-267 86-221 (254)
172 TIGR01769 GGGP geranylgeranylg 50.9 34 0.00073 31.7 5.4 56 199-262 16-71 (205)
173 cd02071 MM_CoA_mut_B12_BD meth 50.8 85 0.0018 26.1 7.5 71 125-211 36-106 (122)
174 COG0042 tRNA-dihydrouridine sy 50.2 1.1E+02 0.0024 30.3 9.3 131 125-267 20-172 (323)
175 PF03918 CcmH: Cytochrome C bi 49.7 20 0.00044 31.4 3.6 46 324-387 42-87 (148)
176 cd00381 IMPDH IMPDH: The catal 49.6 68 0.0015 31.8 7.8 65 199-266 98-162 (325)
177 TIGR00736 nifR3_rel_arch TIM-b 49.5 2.3E+02 0.005 26.7 12.9 136 126-267 77-220 (231)
178 PRK11613 folP dihydropteroate 49.5 93 0.002 30.3 8.5 96 183-281 17-138 (282)
179 PRK09195 gatY tagatose-bisphos 49.3 2E+02 0.0043 28.0 10.7 131 127-267 86-232 (284)
180 PRK08508 biotin synthase; Prov 48.7 1E+02 0.0022 29.8 8.6 40 226-265 78-117 (279)
181 PRK07114 keto-hydroxyglutarate 48.7 62 0.0014 30.3 6.9 40 226-270 102-141 (222)
182 PRK07565 dihydroorotate dehydr 48.6 1.7E+02 0.0037 28.9 10.5 84 181-267 102-197 (334)
183 PRK07094 biotin synthase; Prov 48.5 1.2E+02 0.0026 29.6 9.3 84 184-267 183-280 (323)
184 PRK12738 kbaY tagatose-bisphos 48.4 2.7E+02 0.0058 27.2 11.5 129 127-265 86-230 (286)
185 TIGR00259 thylakoid_BtpA membr 48.1 78 0.0017 30.4 7.5 63 201-267 164-227 (257)
186 cd02801 DUS_like_FMN Dihydrour 48.0 86 0.0019 28.8 7.8 73 195-269 139-215 (231)
187 PRK00230 orotidine 5'-phosphat 47.4 2.4E+02 0.0052 26.3 12.2 115 127-267 68-207 (230)
188 PRK08385 nicotinate-nucleotide 47.3 66 0.0014 31.2 7.1 66 202-271 197-263 (278)
189 PRK05718 keto-hydroxyglutarate 47.3 1.9E+02 0.0041 26.9 9.8 76 182-267 16-94 (212)
190 CHL00162 thiG thiamin biosynth 47.1 51 0.0011 31.6 6.0 64 199-267 150-218 (267)
191 PRK13753 dihydropteroate synth 46.7 95 0.0021 30.2 8.0 78 189-267 18-103 (279)
192 TIGR00640 acid_CoA_mut_C methy 46.6 1.1E+02 0.0024 26.1 7.6 85 125-229 39-123 (132)
193 PRK05567 inosine 5'-monophosph 46.5 59 0.0013 34.1 7.1 66 198-266 281-359 (486)
194 TIGR01302 IMP_dehydrog inosine 46.2 61 0.0013 33.6 7.1 65 200-267 229-293 (450)
195 cd04735 OYE_like_4_FMN Old yel 46.0 74 0.0016 31.8 7.5 81 187-267 228-313 (353)
196 COG1646 Predicted phosphate-bi 45.9 44 0.00096 31.6 5.3 58 194-255 28-85 (240)
197 cd01568 QPRTase_NadC Quinolina 45.4 64 0.0014 31.1 6.6 61 205-271 199-259 (269)
198 TIGR00737 nifR3_yhdG putative 45.3 1.2E+02 0.0025 29.9 8.6 70 198-269 151-224 (319)
199 cd04731 HisF The cyclase subun 45.2 78 0.0017 29.6 7.1 71 198-270 153-226 (243)
200 PRK06015 keto-hydroxyglutarate 45.1 79 0.0017 29.2 6.9 39 226-269 87-125 (201)
201 PTZ00314 inosine-5'-monophosph 45.1 1.2E+02 0.0026 32.0 9.1 78 183-265 231-308 (495)
202 PRK05567 inosine 5'-monophosph 45.0 81 0.0017 33.1 7.8 67 197-266 230-296 (486)
203 PTZ00170 D-ribulose-5-phosphat 44.4 2.7E+02 0.0058 26.0 11.4 121 126-268 75-202 (228)
204 cd04728 ThiG Thiazole synthase 44.3 51 0.0011 31.4 5.6 41 226-268 164-205 (248)
205 TIGR01182 eda Entner-Doudoroff 44.0 81 0.0018 29.2 6.8 39 227-270 92-130 (204)
206 PRK07709 fructose-bisphosphate 44.0 94 0.002 30.3 7.6 130 127-267 89-233 (285)
207 PRK00208 thiG thiazole synthas 43.7 52 0.0011 31.4 5.5 41 226-268 164-205 (250)
208 TIGR03128 RuMP_HxlA 3-hexulose 43.6 2.5E+02 0.0053 25.3 13.3 121 124-267 60-186 (206)
209 PRK08508 biotin synthase; Prov 43.4 89 0.0019 30.1 7.4 83 183-268 158-252 (279)
210 TIGR03572 WbuZ glycosyl amidat 43.2 82 0.0018 29.2 6.9 68 198-267 157-227 (232)
211 cd03174 DRE_TIM_metallolyase D 42.9 1E+02 0.0022 28.8 7.6 78 191-269 16-96 (265)
212 PRK07998 gatY putative fructos 42.8 1.8E+02 0.0038 28.4 9.2 131 127-267 86-229 (283)
213 cd04734 OYE_like_3_FMN Old yel 42.6 1.3E+02 0.0028 30.0 8.6 81 187-269 221-317 (343)
214 PRK07428 nicotinate-nucleotide 42.4 95 0.0021 30.3 7.3 64 204-272 213-276 (288)
215 PRK06552 keto-hydroxyglutarate 42.4 1.4E+02 0.0031 27.7 8.2 79 182-267 14-95 (213)
216 COG3010 NanE Putative N-acetyl 42.1 1.1E+02 0.0025 28.4 7.2 84 182-269 68-156 (229)
217 PRK06015 keto-hydroxyglutarate 42.0 1.6E+02 0.0034 27.2 8.4 76 182-267 5-83 (201)
218 PTZ00413 lipoate synthase; Pro 41.9 1.3E+02 0.0027 30.8 8.2 77 191-267 177-259 (398)
219 cd04739 DHOD_like Dihydroorota 41.8 3E+02 0.0065 27.1 11.0 84 181-267 100-195 (325)
220 PF01081 Aldolase: KDPG and KH 41.7 53 0.0011 30.2 5.2 40 226-270 91-130 (196)
221 cd02803 OYE_like_FMN_family Ol 41.7 3.4E+02 0.0073 26.4 12.7 79 189-269 223-313 (327)
222 PRK13111 trpA tryptophan synth 41.6 3.2E+02 0.007 26.1 12.9 121 125-267 103-228 (258)
223 TIGR01496 DHPS dihydropteroate 41.2 1.3E+02 0.0027 28.8 7.9 85 194-281 23-123 (257)
224 PRK06552 keto-hydroxyglutarate 40.9 97 0.0021 28.8 6.9 39 226-269 99-137 (213)
225 PRK08072 nicotinate-nucleotide 40.7 89 0.0019 30.3 6.8 60 204-271 205-264 (277)
226 PRK05718 keto-hydroxyglutarate 40.1 99 0.0021 28.7 6.8 61 198-271 78-138 (212)
227 COG2022 ThiG Uncharacterized e 39.9 60 0.0013 30.8 5.2 37 228-266 173-210 (262)
228 TIGR03151 enACPred_II putative 39.9 73 0.0016 31.3 6.2 111 129-267 77-190 (307)
229 cd04747 OYE_like_5_FMN Old yel 39.6 1.2E+02 0.0027 30.5 7.9 43 226-268 198-256 (361)
230 PF03060 NMO: Nitronate monoox 39.3 76 0.0017 31.4 6.3 66 200-267 149-219 (330)
231 TIGR00007 phosphoribosylformim 38.5 1E+02 0.0023 28.4 6.8 68 198-267 149-218 (230)
232 PRK07084 fructose-bisphosphate 38.5 4.1E+02 0.0089 26.4 11.6 68 197-265 167-266 (321)
233 PRK06978 nicotinate-nucleotide 38.3 85 0.0018 30.8 6.3 62 204-273 222-283 (294)
234 PRK06559 nicotinate-nucleotide 38.3 82 0.0018 30.8 6.1 61 203-271 213-273 (290)
235 PRK06543 nicotinate-nucleotide 38.3 87 0.0019 30.5 6.3 63 203-273 209-271 (281)
236 cd04732 HisA HisA. Phosphorib 38.2 1E+02 0.0022 28.4 6.7 69 198-268 150-220 (234)
237 PRK03892 ribonuclease P protei 38.0 2.6E+02 0.0057 26.0 9.0 112 158-285 15-139 (216)
238 TIGR01768 GGGP-family geranylg 37.8 47 0.001 31.2 4.3 57 197-262 17-73 (223)
239 TIGR00262 trpA tryptophan synt 37.0 2E+02 0.0043 27.4 8.6 84 182-267 11-122 (256)
240 PRK06843 inosine 5-monophospha 36.9 4.9E+02 0.011 26.8 14.1 123 125-267 149-285 (404)
241 TIGR02708 L_lactate_ox L-lacta 36.8 48 0.001 33.6 4.4 40 226-267 217-256 (367)
242 KOG0369 Pyruvate carboxylase [ 36.2 1.5E+02 0.0032 32.6 7.9 77 191-268 715-795 (1176)
243 cd07943 DRE_TIM_HOA 4-hydroxy- 36.1 1.6E+02 0.0036 27.9 7.9 75 191-268 19-106 (263)
244 TIGR00735 hisF imidazoleglycer 35.9 1.1E+02 0.0025 28.8 6.7 68 198-267 159-229 (254)
245 cd04736 MDH_FMN Mandelate dehy 35.9 52 0.0011 33.2 4.5 40 226-267 225-264 (361)
246 PRK09016 quinolinate phosphori 35.8 91 0.002 30.6 6.0 63 203-273 224-286 (296)
247 cd01573 modD_like ModD; Quinol 35.6 1.5E+02 0.0032 28.6 7.5 63 203-270 199-261 (272)
248 PRK01130 N-acetylmannosamine-6 34.7 1.3E+02 0.0028 27.6 6.8 63 200-266 81-145 (221)
249 PRK13111 trpA tryptophan synth 34.7 4.2E+02 0.009 25.3 12.3 126 128-265 28-170 (258)
250 COG0269 SgbH 3-hexulose-6-phos 34.7 3.8E+02 0.0081 25.1 9.5 79 183-267 109-192 (217)
251 TIGR00423 radical SAM domain p 34.5 2E+02 0.0043 28.0 8.4 76 190-267 170-265 (309)
252 PRK07107 inosine 5-monophospha 34.4 1.5E+02 0.0032 31.4 7.8 61 200-264 247-309 (502)
253 KOG1643 Triosephosphate isomer 34.2 82 0.0018 29.3 5.0 99 121-230 135-244 (247)
254 cd02067 B12-binding B12 bindin 34.1 2.1E+02 0.0046 23.2 7.3 67 200-267 43-109 (119)
255 PRK08318 dihydropyrimidine deh 34.1 3.2E+02 0.007 27.9 10.1 42 226-267 239-282 (420)
256 PRK09140 2-dehydro-3-deoxy-6-p 34.0 1.2E+02 0.0025 28.1 6.2 57 201-270 77-133 (206)
257 TIGR00343 pyridoxal 5'-phospha 34.0 55 0.0012 31.9 4.1 48 214-267 48-96 (287)
258 PF01645 Glu_synthase: Conserv 33.9 4.6E+02 0.01 26.6 10.9 71 203-273 223-309 (368)
259 COG0352 ThiE Thiamine monophos 33.8 1.3E+02 0.0028 28.0 6.4 65 201-267 118-186 (211)
260 COG3088 CcmH Uncharacterized p 33.7 80 0.0017 27.8 4.7 57 313-387 35-91 (153)
261 TIGR00736 nifR3_rel_arch TIM-b 33.3 4.2E+02 0.009 25.0 10.4 93 167-264 54-165 (231)
262 cd02922 FCB2_FMN Flavocytochro 33.3 61 0.0013 32.5 4.5 40 226-267 202-241 (344)
263 PRK00043 thiE thiamine-phospha 33.1 1.5E+02 0.0033 26.6 6.9 64 203-267 120-188 (212)
264 TIGR01182 eda Entner-Doudoroff 32.9 2.1E+02 0.0045 26.5 7.7 76 182-267 9-87 (204)
265 COG4567 Response regulator con 32.9 1.6E+02 0.0034 26.3 6.3 57 206-264 51-107 (182)
266 cd04724 Tryptophan_synthase_al 32.9 4.2E+02 0.0091 24.8 13.4 118 127-267 92-215 (242)
267 PF03716 WCCH: WCCH motif ; I 32.8 26 0.00057 21.1 1.1 14 318-331 1-14 (25)
268 PRK04169 geranylgeranylglycery 32.6 80 0.0017 29.8 4.9 48 201-253 26-73 (232)
269 cd04731 HisF The cyclase subun 32.6 1.6E+02 0.0035 27.4 7.1 67 199-267 32-100 (243)
270 TIGR03699 mena_SCO4550 menaqui 32.6 2.2E+02 0.0047 28.1 8.3 77 190-268 206-299 (340)
271 PLN02493 probable peroxisomal 32.6 68 0.0015 32.5 4.7 40 226-267 213-252 (367)
272 PRK11840 bifunctional sulfur c 32.4 90 0.0019 31.0 5.4 38 228-267 240-278 (326)
273 PRK02083 imidazole glycerol ph 32.2 1.3E+02 0.0027 28.4 6.3 68 198-267 157-227 (253)
274 cd04722 TIM_phosphate_binding 32.0 3.3E+02 0.0071 23.3 11.8 62 203-266 132-198 (200)
275 cd07948 DRE_TIM_HCS Saccharomy 31.9 2.2E+02 0.0048 27.2 8.0 75 191-269 19-93 (262)
276 PF00478 IMPDH: IMP dehydrogen 31.9 3.8E+02 0.0081 27.0 9.8 77 183-265 98-175 (352)
277 PRK04302 triosephosphate isome 31.9 4.1E+02 0.0089 24.4 13.1 121 126-266 72-201 (223)
278 PRK02506 dihydroorotate dehydr 31.7 3.9E+02 0.0085 26.1 9.9 83 181-267 93-191 (310)
279 PRK12857 fructose-1,6-bisphosp 31.6 4.9E+02 0.011 25.3 11.3 129 127-265 86-230 (284)
280 cd02808 GltS_FMN Glutamate syn 31.6 5.7E+02 0.012 26.0 13.3 75 199-273 230-320 (392)
281 cd00945 Aldolase_Class_I Class 31.5 3.5E+02 0.0076 23.5 12.1 121 128-269 15-151 (201)
282 PRK10605 N-ethylmaleimide redu 31.5 2.1E+02 0.0046 28.8 8.1 79 187-269 241-323 (362)
283 cd02067 B12-binding B12 bindin 31.2 1.3E+02 0.0028 24.6 5.5 21 125-145 36-56 (119)
284 PLN02716 nicotinate-nucleotide 31.0 1.2E+02 0.0026 29.9 6.0 62 206-271 228-294 (308)
285 PLN02979 glycolate oxidase 30.9 75 0.0016 32.2 4.7 40 226-267 212-251 (366)
286 cd04739 DHOD_like Dihydroorota 30.8 5.3E+02 0.011 25.4 13.9 130 130-268 116-267 (325)
287 COG0320 LipA Lipoate synthase 30.8 3.2E+02 0.007 26.7 8.6 99 113-214 149-248 (306)
288 cd04729 NanE N-acetylmannosami 30.4 4.2E+02 0.0092 24.1 12.3 64 202-267 138-206 (219)
289 KOG4175 Tryptophan synthase al 30.4 4.6E+02 0.0099 24.5 9.3 132 127-267 33-177 (268)
290 PRK08745 ribulose-phosphate 3- 30.2 4.6E+02 0.0099 24.5 12.2 119 127-267 73-199 (223)
291 PF02581 TMP-TENI: Thiamine mo 30.1 1.3E+02 0.0028 26.8 5.7 64 200-265 108-175 (180)
292 PRK05286 dihydroorotate dehydr 30.0 4.7E+02 0.01 26.0 10.3 86 182-268 139-246 (344)
293 PRK06801 hypothetical protein; 29.9 1.5E+02 0.0033 28.9 6.5 68 197-267 159-233 (286)
294 cd04726 KGPDC_HPS 3-Keto-L-gul 29.9 4E+02 0.0086 23.7 12.4 115 131-268 69-187 (202)
295 cd04729 NanE N-acetylmannosami 29.8 1.6E+02 0.0034 27.1 6.4 64 200-266 85-149 (219)
296 PLN02535 glycolate oxidase 29.8 78 0.0017 32.0 4.6 40 226-267 212-251 (364)
297 cd00381 IMPDH IMPDH: The catal 29.8 1.5E+02 0.0033 29.2 6.7 66 200-266 149-225 (325)
298 PTZ00314 inosine-5'-monophosph 29.8 1.4E+02 0.003 31.5 6.6 66 199-267 295-373 (495)
299 cd04742 NPD_FabD 2-Nitropropan 29.6 1.5E+02 0.0033 30.5 6.7 78 183-267 13-102 (418)
300 PRK09196 fructose-1,6-bisphosp 29.6 1.1E+02 0.0024 30.8 5.5 69 196-265 175-275 (347)
301 cd03307 Mta_CmuA_like MtaA_Cmu 29.5 4.9E+02 0.011 25.3 10.3 114 130-258 175-292 (326)
302 cd04741 DHOD_1A_like Dihydroor 29.0 5.4E+02 0.012 24.9 10.8 83 181-267 92-193 (294)
303 PRK08005 epimerase; Validated 28.9 4.7E+02 0.01 24.2 11.8 118 127-267 69-191 (210)
304 TIGR01464 hemE uroporphyrinoge 28.3 5.7E+02 0.012 25.0 11.5 115 129-258 183-300 (338)
305 PRK07565 dihydroorotate dehydr 28.3 5.8E+02 0.013 25.1 13.9 84 182-269 167-270 (334)
306 TIGR01334 modD putative molybd 28.3 1.5E+02 0.0033 28.8 6.1 65 201-270 202-266 (277)
307 PRK02261 methylaspartate mutas 28.2 3.4E+02 0.0075 23.1 7.8 65 202-267 49-120 (137)
308 PRK05581 ribulose-phosphate 3- 28.2 4.5E+02 0.0097 23.7 10.3 121 127-268 72-199 (220)
309 cd02911 arch_FMN Archeal FMN-b 28.0 5E+02 0.011 24.2 10.6 94 167-264 58-169 (233)
310 cd00739 DHPS DHPS subgroup of 27.7 2.8E+02 0.0062 26.4 7.9 80 199-281 29-125 (257)
311 PRK09140 2-dehydro-3-deoxy-6-p 27.2 4.8E+02 0.01 23.9 9.1 42 226-267 138-179 (206)
312 cd03332 LMO_FMN L-Lactate 2-mo 27.1 87 0.0019 31.9 4.4 40 226-267 242-281 (383)
313 PF01070 FMN_dh: FMN-dependent 27.1 53 0.0012 33.0 2.9 40 226-267 214-253 (356)
314 cd04732 HisA HisA. Phosphorib 27.0 2.1E+02 0.0046 26.2 6.8 66 198-265 33-100 (234)
315 TIGR00970 leuA_yeast 2-isoprop 27.0 7.8E+02 0.017 26.4 11.8 124 154-278 138-280 (564)
316 TIGR01417 PTS_I_fam phosphoeno 26.7 6.6E+02 0.014 27.0 11.2 138 123-269 360-527 (565)
317 cd02812 PcrB_like PcrB_like pr 26.6 1.4E+02 0.0029 28.0 5.3 49 206-262 24-72 (219)
318 smart00052 EAL Putative diguan 26.6 2.1E+02 0.0046 25.8 6.7 29 240-268 204-232 (241)
319 TIGR00510 lipA lipoate synthas 26.6 2.6E+02 0.0056 27.5 7.6 72 195-266 95-172 (302)
320 TIGR00620 sporelyase spore pho 26.6 1.3E+02 0.0029 27.7 5.2 51 191-241 68-120 (199)
321 COG0157 NadC Nicotinate-nucleo 26.5 2E+02 0.0043 28.0 6.5 66 202-273 203-268 (280)
322 TIGR00284 dihydropteroate synt 26.4 4.7E+02 0.01 27.7 9.8 84 183-269 154-237 (499)
323 PRK05437 isopentenyl pyrophosp 25.8 2.5E+02 0.0055 28.1 7.5 72 190-267 134-217 (352)
324 PRK09426 methylmalonyl-CoA mut 25.8 2.4E+02 0.0052 31.3 7.8 18 249-266 674-691 (714)
325 PF15469 Sec5: Exocyst complex 25.8 2.2E+02 0.0047 25.3 6.5 42 346-387 73-114 (182)
326 PRK12737 gatY tagatose-bisphos 25.7 6.3E+02 0.014 24.6 11.1 130 127-266 86-231 (284)
327 cd00564 TMP_TenI Thiamine mono 25.6 2.4E+02 0.0051 24.6 6.7 65 201-267 109-178 (196)
328 PRK14567 triosephosphate isome 25.3 2.6E+02 0.0056 26.8 7.1 81 141-231 159-246 (253)
329 cd08612 GDPD_GDE4 Glycerophosp 25.3 1.2E+02 0.0025 29.6 4.9 35 239-273 261-295 (300)
330 COG1902 NemA NADH:flavin oxido 25.2 2.5E+02 0.0053 28.4 7.2 73 197-269 152-260 (363)
331 cd04726 KGPDC_HPS 3-Keto-L-gul 25.1 2E+02 0.0044 25.7 6.2 61 200-266 70-132 (202)
332 cd04733 OYE_like_2_FMN Old yel 25.0 3.7E+02 0.008 26.5 8.5 80 188-269 230-324 (338)
333 PF13413 HTH_25: Helix-turn-he 24.5 86 0.0019 23.0 2.9 43 351-393 11-58 (62)
334 PRK14566 triosephosphate isome 24.4 2.7E+02 0.0058 26.8 7.0 65 163-232 191-257 (260)
335 cd04727 pdxS PdxS is a subunit 24.4 87 0.0019 30.5 3.6 40 226-267 54-94 (283)
336 cd02811 IDI-2_FMN Isopentenyl- 24.3 3.5E+02 0.0076 26.7 8.1 79 183-267 119-209 (326)
337 cd08563 GDPD_TtGDE_like Glycer 24.3 71 0.0015 29.5 3.0 31 239-269 200-230 (230)
338 PF00218 IGPS: Indole-3-glycer 24.1 3.6E+02 0.0079 25.8 7.9 40 228-267 198-238 (254)
339 TIGR01302 IMP_dehydrog inosine 24.1 1.5E+02 0.0034 30.7 5.8 66 199-267 278-356 (450)
340 PRK00748 1-(5-phosphoribosyl)- 24.1 2.4E+02 0.0052 25.9 6.6 65 198-268 150-221 (233)
341 PRK04180 pyridoxal biosynthesi 24.1 88 0.0019 30.6 3.6 39 228-268 65-104 (293)
342 cd00947 TBP_aldolase_IIB Tagat 24.0 6.7E+02 0.014 24.3 11.8 131 127-267 81-226 (276)
343 PRK07695 transcriptional regul 23.7 2.5E+02 0.0054 25.3 6.5 39 227-267 139-177 (201)
344 PRK13802 bifunctional indole-3 23.6 1E+03 0.022 26.3 12.5 43 119-161 60-105 (695)
345 TIGR01521 FruBisAldo_II_B fruc 23.6 1.9E+02 0.0041 29.1 6.0 68 197-265 174-273 (347)
346 PRK11197 lldD L-lactate dehydr 23.6 1.1E+02 0.0023 31.2 4.3 40 226-267 234-273 (381)
347 COG2070 Dioxygenases related t 23.5 1.8E+02 0.0038 29.1 5.8 64 203-267 143-213 (336)
348 COG4049 Uncharacterized protei 23.4 41 0.00088 24.5 0.9 20 324-343 19-41 (65)
349 cd08811 CARD_IPS1 Caspase acti 23.3 80 0.0017 25.0 2.6 41 352-394 44-84 (84)
350 PRK09454 ugpQ cytoplasmic glyc 23.1 84 0.0018 29.6 3.3 35 239-273 209-243 (249)
351 TIGR00433 bioB biotin syntheta 23.0 6.5E+02 0.014 23.9 11.9 143 114-265 111-271 (296)
352 cd01948 EAL EAL domain. This d 23.0 4.2E+02 0.0091 23.7 8.0 30 239-268 202-231 (240)
353 COG2766 PrkA Putative Ser prot 22.8 4E+02 0.0087 28.7 8.3 126 242-382 170-325 (649)
354 cd04737 LOX_like_FMN L-Lactate 22.7 1.1E+02 0.0024 30.8 4.2 40 226-267 210-249 (351)
355 PRK06806 fructose-bisphosphate 22.7 2.8E+02 0.006 26.9 6.9 64 203-268 162-231 (281)
356 PRK07807 inosine 5-monophospha 22.7 2.9E+02 0.0062 29.1 7.4 65 198-265 230-294 (479)
357 PRK10605 N-ethylmaleimide redu 22.6 3.6E+02 0.0079 27.1 7.9 71 199-269 164-271 (362)
358 cd02931 ER_like_FMN Enoate red 22.5 3.6E+02 0.0078 27.3 8.0 70 198-267 154-272 (382)
359 PF01081 Aldolase: KDPG and KH 22.5 1.6E+02 0.0034 27.1 4.8 75 183-267 10-87 (196)
360 COG0800 Eda 2-keto-3-deoxy-6-p 22.4 61 0.0013 30.2 2.1 23 243-265 109-131 (211)
361 cd02933 OYE_like_FMN Old yello 22.4 3.8E+02 0.0082 26.6 7.9 78 190-269 237-316 (338)
362 PRK13399 fructose-1,6-bisphosp 22.3 1.8E+02 0.0038 29.3 5.5 70 196-266 175-276 (347)
363 cd00959 DeoC 2-deoxyribose-5-p 22.2 5.9E+02 0.013 23.0 10.8 94 166-264 103-200 (203)
364 PRK02308 uvsE putative UV dama 22.0 3.2E+02 0.0069 26.8 7.2 21 246-266 190-212 (303)
365 TIGR01036 pyrD_sub2 dihydrooro 22.0 7.7E+02 0.017 24.4 10.1 73 193-266 153-243 (335)
366 PRK15492 triosephosphate isome 21.9 6E+02 0.013 24.4 8.9 72 154-233 186-258 (260)
367 PRK11815 tRNA-dihydrouridine s 21.7 2.4E+02 0.0053 27.9 6.4 75 183-265 14-95 (333)
368 cd08561 GDPD_cytoplasmic_ScUgp 21.7 1E+02 0.0023 28.8 3.6 44 227-273 203-246 (249)
369 cd02803 OYE_like_FMN_family Ol 21.6 4.6E+02 0.0099 25.4 8.4 43 226-268 195-249 (327)
370 COG0502 BioB Biotin synthase a 21.6 3.3E+02 0.0071 27.3 7.2 71 194-266 87-160 (335)
371 COG0167 PyrD Dihydroorotate de 21.5 8E+02 0.017 24.3 14.0 144 114-266 96-269 (310)
372 cd04724 Tryptophan_synthase_al 21.4 6.8E+02 0.015 23.4 12.9 123 129-264 17-156 (242)
373 smart00870 Asparaginase Aspara 21.3 2E+02 0.0044 28.3 5.8 53 203-259 73-134 (323)
374 TIGR01304 IMP_DH_rel_2 IMP deh 21.3 3.2E+02 0.0069 27.7 7.2 76 198-274 200-291 (369)
375 PRK00278 trpC indole-3-glycero 21.1 7.2E+02 0.016 23.6 10.8 118 124-265 68-185 (260)
376 PRK13585 1-(5-phosphoribosyl)- 21.1 3.1E+02 0.0067 25.3 6.7 68 198-267 153-222 (241)
377 PF13167 GTP-bdg_N: GTP-bindin 21.0 1.1E+02 0.0024 24.7 3.1 31 235-265 31-62 (95)
378 PRK01033 imidazole glycerol ph 20.9 2.9E+02 0.0063 26.2 6.6 63 197-265 155-224 (258)
379 TIGR01303 IMP_DH_rel_1 IMP deh 20.8 2.9E+02 0.0062 29.0 7.0 67 198-267 278-357 (475)
380 PRK08255 salicylyl-CoA 5-hydro 20.8 3.7E+02 0.0081 29.9 8.3 71 199-269 556-660 (765)
381 COG2200 Rtn c-di-GMP phosphodi 20.7 6.8E+02 0.015 23.5 9.1 84 183-267 123-234 (256)
382 cd08582 GDPD_like_2 Glyceropho 20.7 80 0.0017 29.2 2.6 32 239-270 201-232 (233)
383 TIGR03551 F420_cofH 7,8-dideme 20.6 7.2E+02 0.016 24.5 9.6 77 191-267 205-301 (343)
384 TIGR03551 F420_cofH 7,8-dideme 20.4 3.9E+02 0.0085 26.4 7.7 67 199-265 78-156 (343)
385 cd02072 Glm_B12_BD B12 binding 20.4 5.4E+02 0.012 21.9 7.9 62 203-265 46-114 (128)
386 PRK14905 triosephosphate isome 20.4 6.3E+02 0.014 25.4 9.0 82 154-243 187-269 (355)
387 cd08609 GDPD_GDE3 Glycerophosp 20.2 1.8E+02 0.0038 28.8 5.0 44 227-273 236-279 (315)
388 PF13653 GDPD_2: Glycerophosph 20.1 1.2E+02 0.0026 19.1 2.4 24 246-269 6-29 (30)
389 PRK06512 thiamine-phosphate py 20.0 3.4E+02 0.0073 25.3 6.6 63 203-268 127-193 (221)
No 1
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming. This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
Probab=100.00 E-value=2.3e-103 Score=780.08 Aligned_cols=361 Identities=27% Similarity=0.528 Sum_probs=343.6
Q ss_pred EEEEeecCCCceeEEEEcCCCCceeecCcccccccCcccCcCCHHHHhcCCCCCCceeecccchhccCCCcccccccCCc
Q 015981 3 FAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSIGGL 82 (397)
Q Consensus 3 F~v~~~~~~~aR~G~l~~~~~~~~i~TP~f~~~t~~g~~~~Lt~d~l~~~~~~~~~~~~~n~~~l~~~~~~~~~~~~gGl 82 (397)
|+|... ++.||+|+|+|+ |++|+||+||+++++|.+++|||++|+++ ++++++.|+|||+++||.+++++.|||
T Consensus 1 f~i~~~-~~~aR~G~l~t~--hg~i~TP~fmpv~t~g~vk~lt~~~l~~~---g~~~il~Ntyhl~~rpg~~~i~~~gGl 74 (368)
T TIGR00430 1 FELQKT-DKHARVGKLNTP--HGSVETPVFMPVGTLGTVKGLTPEELEAT---GAEIILANTYHLWLRPGQKIVKELGGL 74 (368)
T ss_pred CEEEec-cCCcceeEEEcC--CceeeCCceEecccccccCccCHHHHHHc---CCCeEeccHHHHhhCCcHHHHHHhCCH
Confidence 778432 456999999999 67999999999999999999999999998 899999999999999999999999999
Q ss_pred ccccCCCCceeEeecCCccCCccCCCCCCCCceEEEcC-CC-ceecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHH
Q 015981 83 HQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETP-CG-RRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNK 160 (397)
Q Consensus 83 h~f~~~~~~~~~~sg~~~~~~~~~~~~~~~~gv~~~s~-~G-~~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~ 160 (397)
|+||+|+++++||||+||++|+++..+.+++||.|+|+ +| ++.+|||+++++|++|||||+|+|||++++..+.||++
T Consensus 75 h~f~~w~~~ilTDSGgfQv~sl~~~~~i~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~igsDI~m~LD~~~~~~~~~~~~~ 154 (368)
T TIGR00430 75 HKFMQWDGPILTDSGGFQVFSLSDLRKIEEEGVHFKSPIDGSKIFLTPEKSMEIQYALGSDIIMAFDECTPYPADRDYAE 154 (368)
T ss_pred HHHhCCCCceeeccCcceEEecCccccCCCCceEeecCCCCceEEEcHHHHHHHHHHhCCCEEEECCcCCCCCCCHHHHH
Confidence 99999999999999999999999999999999999999 88 57999999999999999999999988888888999999
Q ss_pred HHHHHHHHHHHHHHHhCCC---CCCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCC
Q 015981 161 TSVDRTVKWLDECIARSPA---GGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLP 237 (397)
Q Consensus 161 ~sverT~~w~~~~l~~~~~---~~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp 237 (397)
+||+||++|+++|++.+++ ++.+|||||||.+++||++|++++.+++++||+|||++.||+.+++.++|.++.+.||
T Consensus 155 ~av~rT~rW~~r~~~~~~~~~~~~~lfgiVqGg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~iv~~~~~~lp 234 (368)
T TIGR00430 155 KSTERTLRWAERCLEAHDRRGNKQALFGIVQGGTYEDLRSQSAEGLIELDFPGYAIGGLSVGEPKEDMLRILEHTAPLLP 234 (368)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCeeEEEEeCCCCCHHHHHHHHHHHHHCCCCeeEeCCccCCCCHHHHHHHHHHHHhhCC
Confidence 9999999999999986543 2459999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCCChHHHHHHHHcCCcEEecchhHHhhhcceeecccCCccccccccccccCCCCCcceeeecCcccccCCC
Q 015981 238 KDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYRKDAT 317 (397)
Q Consensus 238 ~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a~~G~al~f~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~D~~ 317 (397)
++||||+||+|+|.+|+.+|++|||+|||++|++.|++|.||++ .+.+||++.+|+.|++
T Consensus 235 ~~kPryl~Gvg~P~~i~~~v~~GvD~FD~~~ptr~Ar~G~alt~--------------------~g~i~l~~~~~~~D~~ 294 (368)
T TIGR00430 235 KDKPRYLMGVGTPEDLLNAIRRGIDMFDCVMPTRNARNGTLFVT--------------------EGRINIKNAKYKDDTR 294 (368)
T ss_pred cccceeecCCCCHHHHHHHHHcCCCEEEecCcccccCCCceECC--------------------CCcEeCCchhhhccCC
Confidence 99999999999999999999999999999999999999999984 4789999999999999
Q ss_pred CCCCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 015981 318 PIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRREH 389 (397)
Q Consensus 318 pl~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~~~~~~ 389 (397)
||+++|+||+|++|||||||||++++||++++||++||+++|.+||++||++|++|+|++|+++|++++.+.
T Consensus 295 Pi~~~C~C~tC~~~traYLhHL~~~~E~l~~~LLt~HNl~~~~~l~~~iR~aI~~g~~~e~~~~~~~~~~~~ 366 (368)
T TIGR00430 295 PLDEECDCYTCKNYSRAYLRHLIRCNELLGARLATLHNLHFYLRLMEKIRQAILEDRFLSFRTEFLERYGEE 366 (368)
T ss_pred CCCCCCCCccccccCHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988654
No 2
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional
Probab=100.00 E-value=3.2e-103 Score=779.26 Aligned_cols=358 Identities=29% Similarity=0.514 Sum_probs=341.5
Q ss_pred CeEEEEeecCCCceeEEEEcCCCCceeecCcccccccCcccCcCCHHHHhcCCCCCCceeecccchhccCCCcccccccC
Q 015981 1 MKFAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSIG 80 (397)
Q Consensus 1 m~F~v~~~~~~~aR~G~l~~~~~~~~i~TP~f~~~t~~g~~~~Lt~d~l~~~~~~~~~~~~~n~~~l~~~~~~~~~~~~g 80 (397)
|+|+|... ++.||+|+|+++ |++|+||+||+++++|.+++||||+++++ ++++++.|+||++++||.+++++.|
T Consensus 3 ~~F~i~~~-~~~aR~G~l~t~--hg~i~TP~fmpv~t~g~v~~lt~~~l~~~---g~~~il~ntyhl~l~pg~~~~~~~g 76 (366)
T PRK00112 3 MKFELIKT-DGRARRGRLTTP--HGVVETPAFMPVGTYGTVKGMTPEELKET---GAQIILGNTYHLWLRPGLEIIKKHG 76 (366)
T ss_pred cEEEEEec-cCCcceeEEEcC--CcceeCCceeeccCCCcCCcCCHHHHHHc---CCCeEeccHHHHhhCCcHHHHHHcC
Confidence 68999432 367999999999 67999999999999999999999999998 8999999999999999999999999
Q ss_pred CcccccCCCCceeEeecCCccCCccCCCCCCCCceEEEcC-CC-ceecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHH
Q 015981 81 GLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETP-CG-RRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKR 158 (397)
Q Consensus 81 Glh~f~~~~~~~~~~sg~~~~~~~~~~~~~~~~gv~~~s~-~G-~~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr 158 (397)
|||+||||+++++||||+||++++....+++++||.|+|+ +| ++.+|||+++++|++|||||+|+||+++++..++|+
T Consensus 77 GLh~f~~w~~~ilTDSGgfQ~~sl~~~~~~~~~Gv~f~s~~~G~~~~ltpe~~~~~q~~ig~DI~~~LD~~~~~~~~~~~ 156 (366)
T PRK00112 77 GLHKFMNWDGPILTDSGGFQVFSLSDLRKITEEGVTFRSHIDGSKHFLTPEKSMEIQYDLGSDIVMAFDECPPYPATYDY 156 (366)
T ss_pred CHHHHhCCCCceeeccCcceeeeccccccCCCCceEEecCCCCceEEeCHHHHHHHHHHhCCCEEEECCcCCCCCCCHHH
Confidence 9999999999999999999999999999999999999998 88 679999999999999999999999878777789999
Q ss_pred HHHHHHHHHHHHHHHHHhCCC---CCCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcC
Q 015981 159 NKTSVDRTVKWLDECIARSPA---GGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDN 235 (397)
Q Consensus 159 ~~~sverT~~w~~~~l~~~~~---~~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~ 235 (397)
+++||+||++|+++|++.+.+ .+.+|||||||.++|||++|++++.+++++||+|||++.||+.+++.++|+++.+.
T Consensus 157 ~~~sv~rT~rw~~~~~~~~~~~~~~~~lfgiVQGg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~~v~~~~~~ 236 (366)
T PRK00112 157 AKKSMERTLRWAERSRDAHDRLENDQALFGIVQGGVYEDLRRESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTAPL 236 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCCcceEEEEeeCCccHHHHHHHHHHHHhCCCceeEeccccCCCCHHHHHHHHHHHHhh
Confidence 999999999999999986543 24599999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhhhcceeecccCCccccccccccccCCCCCcceeeecCcccccC
Q 015981 236 LPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYRKD 315 (397)
Q Consensus 236 Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a~~G~al~f~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~D 315 (397)
||++||||+||+|+|.+|+.+|++|||+|||++|++.|++|.||++ .+.+||++.+|+.|
T Consensus 237 lp~~kPryl~Gvg~P~~i~~~v~~GvD~FD~~~p~r~Ar~G~alt~--------------------~g~~~l~~~~~~~d 296 (366)
T PRK00112 237 LPEDKPRYLMGVGTPEDLVEGVARGVDMFDCVMPTRNARNGTLFTS--------------------FGRLNIRNAKYKED 296 (366)
T ss_pred CCCcCCeEecCCCCHHHHHHHHHcCCCEEeeCCccccccCCceeCC--------------------CccEECCchhhhcc
Confidence 9999999999999999999999999999999999999999999995 47899999999999
Q ss_pred CCCCCCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 015981 316 ATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQ 384 (397)
Q Consensus 316 ~~pl~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~ 384 (397)
++||+++|+||+|++|||||||||++++||++++||++||+++|.+||+.||++|++|+|++|+++|+.
T Consensus 297 ~~Pi~~~C~C~~C~~~traYlhhL~~~~E~l~~~Ll~~HNl~~~~~~~~~iR~aI~~g~~~e~~~~~~~ 365 (366)
T PRK00112 297 TRPLDPECDCYTCRNYSRAYLHHLFRAGEILGARLNTIHNLHYYQRLMEEIREAIEEGRFEEFRAEFYE 365 (366)
T ss_pred CCCCCCCCCCcccCccCHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999999999999999999975
No 3
>COG0343 Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.5e-103 Score=764.25 Aligned_cols=361 Identities=30% Similarity=0.532 Sum_probs=345.4
Q ss_pred EEEEeecCCCceeEEEEcCCCCceeecCcccccccCcccCcCCHHHHhcCCCCCCceeecccchhccCCCcccccccCCc
Q 015981 3 FAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSIGGL 82 (397)
Q Consensus 3 F~v~~~~~~~aR~G~l~~~~~~~~i~TP~f~~~t~~g~~~~Lt~d~l~~~~~~~~~~~~~n~~~l~~~~~~~~~~~~gGl 82 (397)
|+++ ++++.||+|+|.|+ ||.|+||+|||++..|.+++++|++++++ |+++++.|+||+|++||.++++..|||
T Consensus 1 f~~~-~~d~~aR~G~l~t~--hg~ieTP~FmPVgt~~~vk~~~~~~l~~~---ga~iil~NtYhl~lrpg~e~v~~~gGl 74 (372)
T COG0343 1 FEIL-AKDGGARVGRLETP--HGVIETPAFMPVGTNGTVKGMTPEELKEL---GAQIILTNTYHLYLRPGLEIVALLGGL 74 (372)
T ss_pred Ceee-ccCCCeeeEEEEcC--CCcccCCceeecccccccccCCHHHHHhc---CCCEEeeceeeeeeCCchhHHHHcCCH
Confidence 4443 35789999999999 78999999999988887889999999998 999999999999999999999999999
Q ss_pred ccccCCCCceeEeecCCccCCccCCCCCCCCceEEEcC-CC-ceecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHH
Q 015981 83 HQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETP-CG-RRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNK 160 (397)
Q Consensus 83 h~f~~~~~~~~~~sg~~~~~~~~~~~~~~~~gv~~~s~-~G-~~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~ 160 (397)
|+||+|+++++||||+||++|+++..+.+++||.|+++ +| ++.+|||+++++|+.+|+||+|+||+++|+.+++++++
T Consensus 75 H~f~~w~~pilTDSGgFQv~sL~~~~~~~e~gv~f~s~~dG~k~~~tpe~s~~iQ~~lGsDI~m~lDe~~~~~a~~~~a~ 154 (372)
T COG0343 75 HKFMGWDGPILTDSGGFQVFSLGDLRKITEEGVTFKSHIDGSKVFLTPEESMEIQKDLGSDIIMILDECTPPPADREYAE 154 (372)
T ss_pred HHHhcCCCCeeecCCCceEEEcccccccccccceeecccCCceeecChHHHHHHHHHhCCceeeecCcCCCCCCcHHHHH
Confidence 99999999999999999999999999999999999999 89 57999999999999999999999988999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCC--CCCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCC
Q 015981 161 TSVDRTVKWLDECIARSPA--GGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPK 238 (397)
Q Consensus 161 ~sverT~~w~~~~l~~~~~--~~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~ 238 (397)
++|+||++|+++|++.+++ .+.+|||||||.++|||++|++++.+++++||+|||++.|++.+++.++|..+.+.||+
T Consensus 155 ~s~erT~rwa~r~~~~~~~~~~~~lfgivQGg~y~dLR~~sa~~l~~l~f~gyaIGGl~vge~~~~m~~il~~~~~~Lp~ 234 (372)
T COG0343 155 KSVERTLRWAERSLEAHKRLNDQALFGIVQGGTYEDLRRRSAEELNELDFDGYAIGGLSVGEPKEDMVRILEATKPLLPE 234 (372)
T ss_pred HHHHHHHHHHHHHHHHHhccCCceEEEeecCCCcHHHHHHHHHHHHhCCCCceeecCccCCCCHHHHHHHHHHhhccCCC
Confidence 9999999999999988764 45699999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCChHHHHHHHHcCCcEEecchhHHhhhcceeecccCCccccccccccccCCCCCcceeeecCcccccCCCC
Q 015981 239 DWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYRKDATP 318 (397)
Q Consensus 239 ~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a~~G~al~f~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~D~~p 318 (397)
+|||||||+|+|++|+.||++|||||||++|++.||+|.+|| ..|.+||++.+|++|++|
T Consensus 235 ~kPryLmGvG~P~~i~~aV~~GvDmFDcv~ptr~aR~g~~~t--------------------~~G~~~i~~~k~~~d~~p 294 (372)
T COG0343 235 DKPRYLMGVGHPEDIVEAVALGVDMFDCVMPTRYARNGRLLT--------------------RDGRVNIRNAKLAEDTRP 294 (372)
T ss_pred CCCEEeecCCCHHHHHHHHHhCCchhhccchhhhccCCcEEe--------------------ecCccccchhhhhhcCCC
Confidence 999999999999999999999999999999999999999998 258999999999999999
Q ss_pred CCCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 015981 319 IVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRREH 389 (397)
Q Consensus 319 l~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~~~~~~ 389 (397)
|+++|+||+|++|||||||||++++|+++++|+++||||+|.++|++||+||++|+|++|+++|.+++..-
T Consensus 295 ld~~C~C~~C~~ysRayl~hL~~~~e~~~~~L~t~HNL~~~~~lm~~iR~AI~eg~f~e~~~~~~~~~~~~ 365 (372)
T COG0343 295 LDEPCSCPTCRNYSRAYLRHLRRANEELGARLLTIHNLYFYLRLMKEIRQAIKEGRFLEFVEEFAEKHPRL 365 (372)
T ss_pred CCCCCCCcccCCcccccHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988643
No 4
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities. Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.
Probab=100.00 E-value=1.1e-102 Score=775.70 Aligned_cols=360 Identities=27% Similarity=0.503 Sum_probs=342.5
Q ss_pred EEEEeecCCCceeEEEEcCCCCceeecCcccccccCcccCcCCHHHHhcCCCCCCceeecccchhccCCCcccccccCCc
Q 015981 3 FAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSIGGL 82 (397)
Q Consensus 3 F~v~~~~~~~aR~G~l~~~~~~~~i~TP~f~~~t~~g~~~~Lt~d~l~~~~~~~~~~~~~n~~~l~~~~~~~~~~~~gGl 82 (397)
|+|.. .++.||+|+|+|+ |++|+||+||+++++|.+++|||++++++ ++++++.|+|||+++||.+++++.|||
T Consensus 1 F~i~~-~~~~aR~G~l~t~--hg~i~TP~fmpv~t~g~vk~l~~~~l~~~---g~~~il~Ntyhl~l~pg~~~i~~~gGl 74 (367)
T TIGR00449 1 FEIKK-TDGHARVGRLKTP--HGSVETPVFMPVGTLGTVKGLTPEELKKT---GAQIILANTYHLYLRPGQKIVALLGGL 74 (367)
T ss_pred CEEEe-ccCCcceeEEEcC--CceeeCCceEeeccCCcCCcCCHHHHHHc---CCCEEecchhhhhcCCcHHHHHHhCCH
Confidence 77833 2467999999999 67999999999999999999999999998 999999999999999999999999999
Q ss_pred ccccCCCCceeEeecCCccCCccCCCCCCCCceEEEcC-CC-ceecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHH
Q 015981 83 HQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETP-CG-RRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNK 160 (397)
Q Consensus 83 h~f~~~~~~~~~~sg~~~~~~~~~~~~~~~~gv~~~s~-~G-~~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~ 160 (397)
|+||+|+++++||||+||++|+.+..+.+++||.|+|+ +| ++.+|||+++++|++|||||+|+|||++++..+.|+++
T Consensus 75 h~f~~w~~~ilTDSGgfQv~sl~~~~~i~~~Gv~f~s~~dg~~~~ltpe~~i~~q~~ig~DI~m~LD~~~~~~~~~~~~~ 154 (367)
T TIGR00449 75 HKFMQWDGPILTDSGGFQVFSLGDLRKIEEEGVHFKSPIDGSKIFLTPEKIMEIQYALGSDIIMALDECTPPPADYDYAE 154 (367)
T ss_pred HHHcCCCCceEeccCcceeEecCcccccCCCceeeecCCCCCceecCHHHHHHHHHHHCCCEEEECCcCCCCCCCHHHHH
Confidence 99999999999999999999999888999999999999 78 57899999999999999999999988888788999999
Q ss_pred HHHHHHHHHHHHHHHhCCC--CCCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCC
Q 015981 161 TSVDRTVKWLDECIARSPA--GGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPK 238 (397)
Q Consensus 161 ~sverT~~w~~~~l~~~~~--~~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~ 238 (397)
+||+||++|+++|++.+++ .+.+|||||||.+++||++|++++.+++++||+|||+++||+.+++.++|..+.+.||+
T Consensus 155 ~av~rT~rw~~r~~~~~~~~~~~~lfgiVqGg~~~dLR~~sa~~l~~~~~~GyaIGGl~~ge~~~~~~~~l~~~~~~lP~ 234 (367)
T TIGR00449 155 ESLERTLRWAEESLEYHKRRNENALFGIVQGGTYPDLRRQSAEGLAELDFDGYAIGGVSVGEPKRDMLRILEHVAPLLPK 234 (367)
T ss_pred HHHHHHHHHHHHHHHHHhccCCceEEEEecCCCCHHHHHHHHHHHhhCCCCeEEEeCcccCCCHHHHHHHHHHHHhhCCc
Confidence 9999999999999986643 35699999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCCCChHHHHHHHHcCCcEEecchhHHhhhcceeecccCCccccccccccccCCCCCcceeeecCcccccCCCC
Q 015981 239 DWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYRKDATP 318 (397)
Q Consensus 239 ~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a~~G~al~f~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~D~~p 318 (397)
+||||+||+|+|.+|+.+|++|||+|||++|++.|++|.||++ .+.+||++.+|+.|++|
T Consensus 235 ~kPryl~Gvg~P~~i~~~v~~GvD~FD~~~ptr~Ar~G~alt~--------------------~g~~~l~~~~~~~d~~P 294 (367)
T TIGR00449 235 DKPRYLMGVGTPELLANAVSLGIDMFDCVAPTRYARNGTLLTT--------------------EGRIKIKNAKYKDDTRP 294 (367)
T ss_pred ccceEecCCCCHHHHHHHHHcCCCEEeeCCccccccCCeeECC--------------------CCCccccchhhccCCCC
Confidence 9999999999999999999999999999999999999999984 47899999999999999
Q ss_pred CCCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015981 319 IVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRRE 388 (397)
Q Consensus 319 l~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~~~~~ 388 (397)
|+++|+||+|++|||||||||++++||+|++||++||+++|.+||+.||++|++|+|++|+++|++.+..
T Consensus 295 i~~~C~C~~C~~~sraYlhhL~~~~E~l~~~Ll~~HNl~~~~~~~~~iR~aI~~g~~~e~~~~~~~~~~~ 364 (367)
T TIGR00449 295 LDEPCDCYVCKNYSRAYLRHLIRCNELLGARLATEHNLHFSFRLIEKIRQAILEDRLLSFVEEFLEAYGR 364 (367)
T ss_pred CCCCCCCccccccCHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999988754
No 5
>PRK01008 queuine tRNA-ribosyltransferase; Provisional
Probab=100.00 E-value=2.7e-102 Score=767.67 Aligned_cols=344 Identities=26% Similarity=0.412 Sum_probs=321.7
Q ss_pred CeEEE-EeecCCCceeEEEEcCCCCceeecCcccccccCcccCcCCHHHHhcCCCCCCceeecccchhccCCCccccccc
Q 015981 1 MKFAV-KALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSI 79 (397)
Q Consensus 1 m~F~v-~~~~~~~aR~G~l~~~~~~~~i~TP~f~~~t~~g~~~~Lt~d~l~~~~~~~~~~~~~n~~~l~~~~~~~~~~~~ 79 (397)
|+|+| +++.+++||+|+|+|+ |++|+||+||++..+|.+..| ++++ ++++++.|+|||+++||.+++++.
T Consensus 3 ~~F~i~~~~~~~~aR~G~l~t~--hG~i~TP~fmPVgt~~~vk~l----l~~~---g~~iil~NtyhL~lrpg~~~i~~~ 73 (372)
T PRK01008 3 LKFELLHQSKKSRARVGRIETA--HGIIDTPAFVPVATNGALKGV----LDHS---NIPLMFCNTYHLLVHPGTEAIAAM 73 (372)
T ss_pred eEEEEEeccCCCccceeEEEeC--CcceeCCceeecccHHHHHHH----HHHc---CCCEEEechhhhhhCCCHHHHHHc
Confidence 57899 6666789999999999 789999999998777765544 6776 999999999999999999999999
Q ss_pred CCcccccCCCCceeEeecCCccCCccC------------------CCCCCCCceEEEcC-CC-ceecChhhHHHHHHhcC
Q 015981 80 GGLHQMVGLHEYGFAAVARDSIQCLPE------------------CGSTNKTGASFETP-CG-RRLIKPVEYMEMITSMK 139 (397)
Q Consensus 80 gGlh~f~~~~~~~~~~sg~~~~~~~~~------------------~~~~~~~gv~~~s~-~G-~~~ltpe~~~~~q~~i~ 139 (397)
||||+||+|+++++||||+||++|+.. ..+.+++||.|+|+ +| ++.+|||+++++|+.||
T Consensus 74 GGlH~fm~w~gpilTDSGgfQv~SL~~~~v~~~~~~~~~~~~~~~~~~i~e~Gv~F~s~~dG~~~~ltPe~~i~~Q~~iG 153 (372)
T PRK01008 74 GGLHQFIGRNAPIITDSGGFQIFSLAYGSVAEEIKSCGKKKGGSSILKITDEGVWFKSYRDGRKLFLSPEISVQAQKDLG 153 (372)
T ss_pred CCHHHHhCCCCcccccCcceeEEEeccccchhhhccccccccccccceecCCCeEEecCCCCCceeeCHHHHHHHHHHHC
Confidence 999999999999999999999998872 23677999999998 88 56899999999999999
Q ss_pred CcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC---CCCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCc
Q 015981 140 PNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPA---GGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGF 216 (397)
Q Consensus 140 pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~---~~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl 216 (397)
|||+|+|||++++..+.+++++||+||++|+++|++.+.+ .+.+|||||||.++|||++|++++.+++++||+|||
T Consensus 154 sDI~m~LDe~~~~~~~~~~~~~sv~rT~rW~~r~~~~~~~~~~~q~lfgiVQGG~~~dLR~~Sa~~l~~~~~~GyaIGG- 232 (372)
T PRK01008 154 ADIIIPLDELLPFHADPTYFLQSCQRTYVWEKRSLDYHLKNPRHQSMYGVIHGGIDPDQRKIGCKFVEDLPFDGSAIGG- 232 (372)
T ss_pred CCEEEEccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCccceEEEEecCCCCHHHHHHHHHHHHhCCCCEEEECC-
Confidence 9999999888787889999999999999999999986542 356999999999999999999999999999999999
Q ss_pred cCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhhhcceeecccCCcccccccccccc
Q 015981 217 GLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLS 296 (397)
Q Consensus 217 ~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a~~G~al~f~~~~~~~~~~~~~~~ 296 (397)
++|++.+++.++|..+.+.||++|||||||+|+|.+|+.+|++|||+|||++|+|.||+|.|||+
T Consensus 233 ~vge~~~~~~~il~~~~~~LP~~kPRyLmGvG~P~di~~~V~~GvD~FDcv~Ptr~AR~G~~lt~--------------- 297 (372)
T PRK01008 233 SLGKNLQEMVEVVGVTTSNLSKERPVHLLGIGDLPSIWATVGFGIDSFDSSYPTKAARHGLILTK--------------- 297 (372)
T ss_pred CCCCCHHHHHHHHHHHHhhCCCCCCeEEecCCCHHHHHHHHHhCCCeeeeccchhhhcCCEEEcC---------------
Confidence 88999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCCCcceeeecCcccccCCCCCCCCCCCccccc-ccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 015981 297 DQGSDRTKINLRATVYRKDATPIVEDCCCYTCQN-HTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGC 374 (397)
Q Consensus 297 ~~~~~~~~i~l~~~~~~~D~~pl~~~C~C~tC~~-~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~ 374 (397)
.+++||++.+|+.|++||+++|+||+|++ |||||||||++++||++++||++||||+|.+||++||++|++|+
T Consensus 298 -----~G~i~i~~~~~~~d~~Pid~~C~C~~C~~~ytraYLhHL~~~~E~l~~~LltiHNl~~~~~l~~~iR~aI~~g~ 371 (372)
T PRK01008 298 -----QGPLKINNQRYSSDLNPIEPGCSCLACSSGISRAYLRHLFKVHEPNAGIWASIHNLHHMQQVMKEIREQILNDR 371 (372)
T ss_pred -----CCceecCchhhccCCCCCCCCCCCcCcCCCCCHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 47899999999999999999999999999 99999999999999999999999999999999999999999997
No 6
>KOG3908 consensus Queuine-tRNA ribosyltransferase [RNA processing and modification]
Probab=100.00 E-value=2.4e-97 Score=687.02 Aligned_cols=362 Identities=31% Similarity=0.506 Sum_probs=345.8
Q ss_pred CeEEE-EeecCCCceeEEEEcCCCCceeecCcccccccCcccCcCCHHHHhcCCCCCCceeecccchhccCCCccccccc
Q 015981 1 MKFAV-KALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSI 79 (397)
Q Consensus 1 m~F~v-~~~~~~~aR~G~l~~~~~~~~i~TP~f~~~t~~g~~~~Lt~d~l~~~~~~~~~~~~~n~~~l~~~~~~~~~~~~ 79 (397)
+.|+| ++|+-+.||.|.|+++ |+.++||.||++...|....+.|++|.++ +++|++.|+|||-++||.+++++.
T Consensus 8 ~~~kvvarcs~t~AR~g~l~Lp--h~~vetPVFMPVGTqgtmKGI~peqL~~l---~Cri~L~NTYHLGlrPG~E~~k~a 82 (396)
T KOG3908|consen 8 LDFKVVARCSTTRARVGTLELP--HSSVETPVFMPVGTQGTMKGIVPEQLDEL---GCRILLGNTYHLGLRPGHELLKKA 82 (396)
T ss_pred hhhhhhhhhcccccceeeeecC--CcccccceeeecccccccccccHHHHHhc---CCEEEeccceecccCCcHHHHHhc
Confidence 35777 8888889999999999 77999999999888887778899999999 999999999999999999999999
Q ss_pred CCcccccCCCCceeEeecCCccCCccCCCCCCCCceEEEcC-CC-ceecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHH
Q 015981 80 GGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETP-CG-RRLIKPVEYMEMITSMKPNLWATLADEVPAWANNK 157 (397)
Q Consensus 80 gGlh~f~~~~~~~~~~sg~~~~~~~~~~~~~~~~gv~~~s~-~G-~~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~k 157 (397)
||+|+||+|+..++||||+||+.|+.+....+++||+|.|+ +| ...+|||+++++|+++|+||+|.|||.+....+.+
T Consensus 83 gGlh~fm~wnr~iLTDSGGFQmvSL~~l~~vtE~GV~F~SP~dg~~~lltPE~Si~iQnalG~DImMQLDdVV~~~ttg~ 162 (396)
T KOG3908|consen 83 GGLHKFMNWNRNILTDSGGFQMVSLLKLATVTEDGVRFRSPHDGEDMLLTPEKSIEIQNALGADIMMQLDDVVHTLTTGP 162 (396)
T ss_pred cchHhHhcCchhheecCCCeEEEeecceeeeccCceeecCCCCCCccccCchhhHHHHHHhchhhhhhhhccccccCCch
Confidence 99999999999999999999999999999999999999998 88 56899999999999999999999999988888889
Q ss_pred HHHHHHHHHHHHHHHHHHhCCC--CCCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcC
Q 015981 158 RNKTSVDRTVKWLDECIARSPA--GGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDN 235 (397)
Q Consensus 158 r~~~sverT~~w~~~~l~~~~~--~~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~ 235 (397)
|++.+|.||+||+++|+..+.+ .|++|+|||||.+.+||++|++++.++.+.|++||||+.||++.+++++|..+...
T Consensus 163 rveeAM~RsIRWlDRCi~Ah~R~d~Q~lFpIiQGGLd~~LR~~c~~em~kR~~~G~AiGGLSGGEeK~~Fwr~V~~ct~~ 242 (396)
T KOG3908|consen 163 RVEEAMYRSIRWLDRCIMAHNRDDEQNLFPIIQGGLDEGLRAECIAEMLKRSVPGIAIGGLSGGEEKSEFWRMVAFCTSS 242 (396)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCccchhhhhhhhcccchHHHHHHHHHHHhcCCCceEecccCCCchHHHHHHHHHHHHcc
Confidence 9999999999999999998765 36799999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhhhcceeecccCCccccccccccccCCCCCcceeeecCcccccC
Q 015981 236 LPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYRKD 315 (397)
Q Consensus 236 Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a~~G~al~f~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~D 315 (397)
||+||||||||+|.|.|++.||++|+|||||+||||.||.|.||+ +.|.++|++++|+.|
T Consensus 243 LP~dkPRYlMGVGya~DlVVCvaLG~DMfDCVyPTRTARFG~alv--------------------~~G~~~l~~~k~k~D 302 (396)
T KOG3908|consen 243 LPPDKPRYLMGVGYAEDLVVCVALGSDMFDCVYPTRTARFGKALV--------------------DSGDLQLRQKKYKSD 302 (396)
T ss_pred CCCCCCceeeccCcccceeeeehhCCchhhcccccchhhhccccc--------------------cccceeecchhhhhc
Confidence 999999999999999999999999999999999999999999998 468899999999999
Q ss_pred CCCCCCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015981 316 ATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRRE 388 (397)
Q Consensus 316 ~~pl~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~~~~~ 388 (397)
+.||++.|+|+||++|||||||||.. +|-.+..||++||++|..++|+++|++|.+++|.+|++.|+..+..
T Consensus 303 ~~pid~~C~C~tC~~ytRaylh~l~~-~etv~~~lltiHNi~yql~Lmr~vResI~~d~fp~Fvk~Fm~~~~~ 374 (396)
T KOG3908|consen 303 FGPIDETCGCPTCKKYTRAYLHALVG-KETVGCHLLTIHNIAYQLQLMRDVRESIQEDRFPQFVKNFMASRFK 374 (396)
T ss_pred ccCCCCCCCCchhhhHHHHHHHHHcc-ccccceeeeehhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhC
Confidence 99999999999999999999999986 8999999999999999999999999999999999999999998875
No 7
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=100.00 E-value=2e-84 Score=661.81 Aligned_cols=328 Identities=21% Similarity=0.255 Sum_probs=302.1
Q ss_pred CeEEEEeecCCCceeEEEEcCCCCceeecCcccccccCcccCcCCHHHHhcCCCCCCceeecccchhccCCCcccccccC
Q 015981 1 MKFAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSIG 80 (397)
Q Consensus 1 m~F~v~~~~~~~aR~G~l~~~~~~~~i~TP~f~~~t~~g~~~~Lt~d~l~~~~~~~~~~~~~n~~~l~~~~~~~~~~~~g 80 (397)
|+|+|.. .+++||+|+|+|+ ||.|+||+||++. .+.+..|+|++|+++ |++++++|+|||+++ .+.++..|
T Consensus 3 ~~Fei~~-~d~~aR~G~l~t~--hg~ieTP~fmPV~-~~~~k~l~~~~l~~~---g~~~il~NtYhl~~r--~~~~~~~g 73 (487)
T PRK13533 3 MVFEIRD-KDLAGRIGKLKTP--HGVVETPALFPVI-NPNKQEISPDELKEF---GAEILITNSYIIYRS--LREKALEK 73 (487)
T ss_pred ceEEEee-ccCCcceeEEEcC--CceeeCCceeecc-cchhcccCHHHHHHh---CCCEEEeeHHHHHhh--hhHHHHhC
Confidence 4699944 3578999999999 7899999999988 577888999999998 999999999999998 66778889
Q ss_pred CcccccCCCCceeEeecCCccCCccCCCCCCCCceEEEcCCCceecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHH
Q 015981 81 GLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPCGRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNK 160 (397)
Q Consensus 81 Glh~f~~~~~~~~~~sg~~~~~~~~~~~~~~~~gv~~~s~~G~~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~ 160 (397)
|||+||+|+++++||||+||++++ |++.+|||+++++|++||+||+|+||+++++..+.++++
T Consensus 74 Glh~f~~w~g~ilTDSGgfQv~s~-----------------g~~~ltpe~~i~~Q~~iGsDI~~~LD~~t~~~~~~~~~~ 136 (487)
T PRK13533 74 GLHKLLGFDGPIMTDSGSYQLLVY-----------------GDVEVTNEEILEFQRKIGSDIGVPLDIPTPPDVDYEEAE 136 (487)
T ss_pred CHHHHhCCCCCeEeccCCcEEEEc-----------------CCccCCHHHHHHHHHHhCCCEEeECCccCCCCCCHHHHH
Confidence 999999999999999999998753 458899999999999999999999988888888999999
Q ss_pred HHHHHHHHHHHHHHHhCCC-CCCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCC---chhhHHHHHHHHHcCC
Q 015981 161 TSVDRTVKWLDECIARSPA-GGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGE---SMEERPSLLNAVTDNL 236 (397)
Q Consensus 161 ~sverT~~w~~~~l~~~~~-~~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge---~~~~~~~~v~~~~~~L 236 (397)
++|+||++|+++|++.+.+ .+.+|||||||.++|||++|++++.+++++||+|||++.|+ ..+++.++|..+.+.|
T Consensus 137 ~sv~rT~rwa~~~~~~~~~~~~~l~giVQGg~~~dLR~~sa~~l~~~~f~gyaIGgl~~~~e~y~~~~~~~ii~~~~~~L 216 (487)
T PRK13533 137 EELEETLERLEEAAELIQDGDMLWVAPVQGGTYPDLREESAREASKLGFDVYPIGAVVPLMERYRYDDLVDVVLAAKRGL 216 (487)
T ss_pred HHHHHHHHHHHHHHHhhhccCccEEEEecCCCCHHHHHHHHHHHHhCCCCEEEEcCcccccccCCHHHHHHHHHHHHhhC
Confidence 9999999999999987643 35699999999999999999999999999999999999886 5688999999999999
Q ss_pred CCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhhhcceeecccCCccccccccccccCCCCCcceeeecCcccccCC
Q 015981 237 PKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYRKDA 316 (397)
Q Consensus 237 p~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a~~G~al~f~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~D~ 316 (397)
|++||||+||+|+|.+|+.+|++|||+|||++|++.|++|.+||. .|.++|++.+|.
T Consensus 217 p~dkPryL~GvG~P~~i~~~V~lGvDlFD~v~ptr~Ar~G~~lT~--------------------~G~~~l~~~~~~--- 273 (487)
T PRK13533 217 GPGAPVHLFGAGHPMMFALAVALGCDLFDSAAYALYARDGRYLTV--------------------TGTYRLEDLEYL--- 273 (487)
T ss_pred CCCCceEEeCCCCHHHHHHHHHhCCCceeccHHHHHHhcCeEEcc--------------------CceEecccccCC---
Confidence 999999999999999999999999999999999999999999983 578888887763
Q ss_pred CCCCCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 015981 317 TPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQS 385 (397)
Q Consensus 317 ~pl~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~~ 385 (397)
+|+||+|++|||||||||++.+ +.+||++||+++|.++|++||++|++|+|++|+++..+.
T Consensus 274 -----~C~C~~C~~ysrayL~~L~~~~---~~~Ll~~HNl~~~~~~m~~iR~aI~~g~l~e~ve~r~r~ 334 (487)
T PRK13533 274 -----PCSCPVCSKYTPKELREMPAEE---RERLLAEHNLYVTFEEIRRIKQAIKEGRLWELVEERARS 334 (487)
T ss_pred -----CCCChhcCccCHHHHHhhhhcc---chhHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhhc
Confidence 6999999999999999999876 899999999999999999999999999999999986654
No 8
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=100.00 E-value=9.8e-83 Score=668.42 Aligned_cols=328 Identities=20% Similarity=0.253 Sum_probs=297.9
Q ss_pred EEEEeecCCCceeEEEEcCCCCceeecCcccccccCcccCcCCHHHHhcCCCCCCceeecccchhccCCCcccccccCCc
Q 015981 3 FAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSIGGL 82 (397)
Q Consensus 3 F~v~~~~~~~aR~G~l~~~~~~~~i~TP~f~~~t~~g~~~~Lt~d~l~~~~~~~~~~~~~n~~~l~~~~~~~~~~~~gGl 82 (397)
|+|.. .+++||+|+|+|+ ||+|+||+|||+. .|.+..|||++|+++ |++++++|+|||+++||.+.++..|||
T Consensus 2 Fei~~-~d~~aR~G~l~t~--hg~i~TP~fmPV~-~~~vk~~~~~~l~~~---g~~~il~NtYhl~~~pg~~~~~~~gGl 74 (639)
T PRK13534 2 FEIKA-RDALGRIGKLKTN--GKKIETPTIMPVI-NPKKQTVDPDEIKKL---GFDIVITNSYIIYKTPELREKALEKGI 74 (639)
T ss_pred eEEEe-ccCCcceEEEEcC--CeeeeCCceeecc-cchhcccCHHHHHHh---CCCEEEehhhhhhhCCchhHHHhcCCh
Confidence 99944 2578999999999 7899999999988 677888999999998 999999999999999999999999999
Q ss_pred ccccCCCCceeEeecCCccCCccCCCCCCCCceEEEcCCCceecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHH
Q 015981 83 HQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPCGRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTS 162 (397)
Q Consensus 83 h~f~~~~~~~~~~sg~~~~~~~~~~~~~~~~gv~~~s~~G~~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~s 162 (397)
|+||+|+++++||||+||++++ |++.+|||+++++|+.||+||+|+||+++++..+.++++++
T Consensus 75 H~f~~w~g~ilTDSGgfQv~s~-----------------g~~~~tpe~~i~~Q~~iGsDI~~~LD~~t~~~~~~~~a~~s 137 (639)
T PRK13534 75 HSLIGFDGPIMTDSGSFQLSVY-----------------GDVEVTNREIIEFQEKIGVDIGTILDIPTPPDVSREKAEED 137 (639)
T ss_pred HHHhCCCCCeEecCCceeeeec-----------------CccccCHHHHHHHHHHhCCCEEEECCcCCCCCCCHHHHHHH
Confidence 9999999999999999998753 45899999999999999999999998888888899999999
Q ss_pred HHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhh---HHHHHHHHHcCCCCC
Q 015981 163 VDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEE---RPSLLNAVTDNLPKD 239 (397)
Q Consensus 163 verT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~---~~~~v~~~~~~Lp~~ 239 (397)
|+||++|+++|++.+. .+.+|||||||.++|||++|++++.+++++||+|||+..++...+ +.++|..+.+.||++
T Consensus 138 v~rT~~wa~~~~~~~~-~~~lfgiVQGg~~~dLR~~sa~~l~~~~f~g~aIGG~v~~~e~~~~~~lv~~i~~~~~~LP~d 216 (639)
T PRK13534 138 LEETLERAKEAIEIKE-KLALNGTVQGSTYPDLRQKSAEEMSKMNFDIYPIGAVVPLMESYRYRDLVDIIINSKMHLPTN 216 (639)
T ss_pred HHHHHHHHHHHHhhhh-cCcEEEeecCCCCHHHHHHHHHHHHhCCCCeEEEcCcchHHhhhhHHHHHHHHHHHHhhCCCC
Confidence 9999999999998653 367999999999999999999999999999999999753443333 445555789999999
Q ss_pred CcccccCCCChHHHHHHHHcCCcEEecchhHHhhhcceeecccCCccccccccccccCCCCCcceeeecCcccccCCCCC
Q 015981 240 WPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYRKDATPI 319 (397)
Q Consensus 240 kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a~~G~al~f~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~D~~pl 319 (397)
|||||||+|+|.+|+.+|++|||+|||++|++.|++|.+||. .+.++|++.+
T Consensus 217 kPryL~GvG~P~~i~~~V~lGvD~FD~v~ptr~Ar~G~~lt~--------------------~G~~~l~~~~-------- 268 (639)
T PRK13534 217 KPVHLFGAGHPMFFALAVALGCDLFDSAAYALYAKDDRYLTP--------------------EGTLHLEELK-------- 268 (639)
T ss_pred CCeEEeCCCCHHHHHHHHHhCCCceeccHHHHHHhcCeEEec--------------------CCceeccccc--------
Confidence 999999999999999999999999999999999999999994 4678887643
Q ss_pred CCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015981 320 VEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSR 386 (397)
Q Consensus 320 ~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~~~ 386 (397)
+++|+||+|++|||||||||.+++ +.+||++||+++|.++|++||++|++|+|++|++.+.+..
T Consensus 269 d~~C~C~~C~~ytrayL~hL~~~~---~~~Ll~~HNl~~~~~~~~~iR~aI~~g~l~e~ve~~~r~h 332 (639)
T PRK13534 269 EFPCSCPVCSKYTPKELREMPKEE---RTRLLAEHNLYVIFEEINRIKQAIKEGSLWELVEERCRSH 332 (639)
T ss_pred cCCCCCccccccCHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhC
Confidence 578999999999999999999775 8999999999999999999999999999999999988664
No 9
>KOG3909 consensus Queuine-tRNA ribosyltransferase [RNA processing and modification]
Probab=100.00 E-value=5.1e-75 Score=548.00 Aligned_cols=376 Identities=31% Similarity=0.463 Sum_probs=313.8
Q ss_pred CeEEEEeecCCCceeEEEEcCCCCceeecCcccccccCcccCcCCHHHHhcCCCCCCceeecccchhccCCCcc-ccccc
Q 015981 1 MKFAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPK-TISSI 79 (397)
Q Consensus 1 m~F~v~~~~~~~aR~G~l~~~~~~~~i~TP~f~~~t~~g~~~~Lt~d~l~~~~~~~~~~~~~n~~~l~~~~~~~-~~~~~ 79 (397)
|||.+.... ..+|+|+|+.+.++.+++||+|+++|++|.+||||+|++++. +..+++.+..+..| ++.... +..+.
T Consensus 1 mkfsies~~-nggRLgki~~~sg~~~~ktP~fllytk~GsiPhLT~dv~en~-~~~pa~~q~tlstL-~~~~e~lt~~ne 77 (414)
T KOG3909|consen 1 MKFSIESSP-NGGRLGKITVGSGNKVLKTPCFLLYTKRGSIPHLTPDVVENQ-FDIPALYQGTLSTL-DRLEESLTLTNE 77 (414)
T ss_pred Cceeeeecc-CCceeeeeeeccCCeeecCcceEeeccCCCCCcCCHHHHhhh-cCCcHHHhhhHHHH-HHHHHHHHHhcC
Confidence 899995443 458999999743356999999999999999999999999995 22334444433333 222221 22335
Q ss_pred CCcccccCCCCceeEeecCCccCCccCCCCCCCCceEEEcCCCceecChhhHHHHHHhcCCcEEEEcCCCC-CCCCCHHH
Q 015981 80 GGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPCGRRLIKPVEYMEMITSMKPNLWATLADEV-PAWANNKR 158 (397)
Q Consensus 80 gGlh~f~~~~~~~~~~sg~~~~~~~~~~~~~~~~gv~~~s~~G~~~ltpe~~~~~q~~i~pDi~~~L~d~~-~~~~~~kr 158 (397)
|+.++|+|+|+...+.+..|+...+|++++..+ .|++||..|++.+|.+.||++|++++||++.+|.|.. +....+||
T Consensus 78 G~g~kfigmP~~l~~lllpdp~splPsgynd~k-sv~iwTa~GkvsLtv~~ymeiv~sl~pd~~e~L~D~dts~~~akkR 156 (414)
T KOG3909|consen 78 GTGKKFIGMPSVLPTLLLPDPTSPLPSGYNDQK-SVNIWTASGKVSLTVDLYMEIVLSLCPDLVEPLNDTDTSPPGAKKR 156 (414)
T ss_pred CcccccccCccccceeecCCCCCCCCCCCCCCc-eeEEEeecCceeccHHHHHHHHHhhCCCeeecccCCCCCchhhhhh
Confidence 777899999999999999999999999876555 5999999999999999999999999999999999955 44456779
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCC-----eEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccC-CCchhhHHHHHHHH
Q 015981 159 NKTSVDRTVKWLDECIARSPAGGA-----VFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGL-GESMEERPSLLNAV 232 (397)
Q Consensus 159 ~~~sverT~~w~~~~l~~~~~~~~-----lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~-ge~~~~~~~~v~~~ 232 (397)
+.|+|+||..|+++++...++... ++|.+-++.-..+|...+.+-...++.||++.|++. +++.+++.++++++
T Consensus 157 v~KsVDRs~~f~~~ll~~~ekvn~~~~~~i~gg~~~~dr~~~~~~~areq~~~~ygg~~f~gF~~n~~t~~~~l~lle~~ 236 (414)
T KOG3909|consen 157 VPKSVDRSVNFTTELLLALEKVNAFNTTKIFGGVPDLDRQYLTPIFAREQENQLYGGIAFLGFSNNKETDKEMLNLLEAD 236 (414)
T ss_pred hhhhHHHHHHHHHHHHHHHhhhcceeeeeeeccccCcceeeeehhhhhhhhcccccceEeeeecCCcccHHHHhhccHHh
Confidence 999999999999999987655322 444444444445566667777778899999999975 57778899999999
Q ss_pred HcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhhhcceeecccCCccccccccccccCCCCCcceeeecCccc
Q 015981 233 TDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVY 312 (397)
Q Consensus 233 ~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a~~G~al~f~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~ 312 (397)
...||++|||.+.|+.+|.+||.||..|||+||++||+.+++.|.||+|+|+.|.....+.++ ...+|+|+++|
T Consensus 237 ~~~Lpedkpr~Isg~~~PleVLecIQrGIDlfdssfpyqate~g~AltfSfd~p~~~d~~ski------e~~ld~~dekf 310 (414)
T KOG3909|consen 237 LVGLPEDKPRCISGFESPLEVLECIQRGIDLFDSSFPYQATEAGVALTFSFDPPSKDDLNSKI------ELGLDMWDEKF 310 (414)
T ss_pred hccCCCCCccccCCCCCHHHHHHHHHhccccccccchhhhhhcceEEEEccCCCchhhhhhce------eeeeccchhhh
Confidence 999999999999999999999999999999999999999999999999999987543222211 24599999999
Q ss_pred ccCCCCCCCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 015981 313 RKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSR 386 (397)
Q Consensus 313 ~~D~~pl~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~~~ 386 (397)
++||.|+..+|.||||++|||||||||++++|++|++||++||+|+|..||+.||++|+++++.+..+....+-
T Consensus 311 aeDftpl~sgC~CytC~kytRaYlhHLl~TrELLa~ILLm~HN~yhy~afF~~IReSl~~del~ql~Eli~~q~ 384 (414)
T KOG3909|consen 311 AEDFTPLQSGCVCYTCRKYTRAYLHHLLQTRELLAWILLMLHNVYHYTAFFQGIRESLQEDELVQLFELIYMQS 384 (414)
T ss_pred hhhccccccCcceehhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhchhHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999888765544
No 10
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2.4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....
Probab=100.00 E-value=3.5e-68 Score=502.75 Aligned_cols=236 Identities=44% Similarity=0.815 Sum_probs=201.9
Q ss_pred hhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhC--CCCCCeEEeecCCCCHHHHHHHHHHHHhc
Q 015981 129 VEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARS--PAGGAVFGSIVGGSNIEERKRCAQEVAVR 206 (397)
Q Consensus 129 e~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~--~~~~~lf~~iqGg~~~~lR~~sa~~l~~~ 206 (397)
|+||++|+.+||||+++||+++|+..++||++++|+||.+|+++|++.+ ..++.+||+||||.+.++|.+|++++.+.
T Consensus 1 E~~i~~q~~l~~Di~~~lD~~~~~~~~~k~~~~sv~rT~~w~~~~~~~~~~~~~~~l~gvIqGg~~~~lR~~s~~~l~~~ 80 (238)
T PF01702_consen 1 EEYIEIQEALGPDIAMALDDCTPYDASRKRAEKSVERTLRWLKECLEEHEEDKKQSLFGVIQGGDDKDLRRRSAEELSED 80 (238)
T ss_dssp HHHHHHHHHHT-SEEE-------TT--HHHHHHHHHHHHHHHHHHHHHHHHHCCSEEEEEE--TT-HHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHCCCEEEECCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCcceeeeeCCCCCHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999999999999999873 23455999999999999999999999998
Q ss_pred CCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhhhcceeecccCCcc
Q 015981 207 NVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRT 286 (397)
Q Consensus 207 ~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a~~G~al~f~~~~~ 286 (397)
+++||+|||++.+++.+++.++|+.+.+.||++||||++|+|+|.+|+.+|++|||+|||++|++.|++|.||+|
T Consensus 81 ~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~~~pr~l~G~~~P~~i~~~v~~GvD~fDs~~p~~~A~~G~al~~----- 155 (238)
T PF01702_consen 81 GFDGYAIGGLSPGEEKEERLEILEAIINNLPPDKPRYLLGVGTPEEILEAVYLGVDLFDSSYPTRLARHGIALTF----- 155 (238)
T ss_dssp S-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-TTS-EEETTB-SHHHHHHHHHTT--EEEESHHHHHHHTTEEEET-----
T ss_pred ccccccccCCcCCCCHHHHHHHHHHHHhhCCcccceeccCCCCHHHHHHHHHcCCcEEcchHHHHHHhcceeecc-----
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred ccccccccccCCCCCcceeeecCcccccCCCCCCCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHH
Q 015981 287 EKNDYNYQLSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSI 366 (397)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~i~l~~~~~~~D~~pl~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~i 366 (397)
.+.+||++.+|+.|++||+++|+||+|++|||||||||++++||+|++||++||+|+|.+||+.|
T Consensus 156 ---------------~~~~~l~~~~~~~d~~pl~~~C~C~~C~~~trayl~hL~~~~e~l~~~Ll~~HNl~~~~~~~~~i 220 (238)
T PF01702_consen 156 ---------------DGTIDLRDAKYKDDFSPLEPGCSCPTCRNYTRAYLHHLLKAKEMLGPVLLSIHNLHHYLRFFKEI 220 (238)
T ss_dssp ---------------TEEEETTSGGGTTS-SBSSTT--SHHHHH-BHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------cceEeecccccccCCCCCCCCCCCCCCcccCHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHH
Q 015981 367 REAIKEGCFEQFQKKFVQ 384 (397)
Q Consensus 367 R~aI~~g~l~~~~~~f~~ 384 (397)
|++|++|+|++|+++|++
T Consensus 221 R~~I~~~~~~~~~~~~~r 238 (238)
T PF01702_consen 221 REAIRNGTLREFVEEFLR 238 (238)
T ss_dssp HHHHHTT-HHHHHHHHH-
T ss_pred HHHHHcCCHHHHHHHHhC
Confidence 999999999999999975
No 11
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=100.00 E-value=1.3e-57 Score=468.78 Aligned_cols=229 Identities=21% Similarity=0.234 Sum_probs=208.8
Q ss_pred hHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC-CCCeEEeecCCCCHHHHHHHHHHHHhcCC
Q 015981 130 EYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPA-GGAVFGSIVGGSNIEERKRCAQEVAVRNV 208 (397)
Q Consensus 130 ~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~-~~~lf~~iqGg~~~~lR~~sa~~l~~~~~ 208 (397)
+++++|+.||+||+|+||+++|+..++++++++|+||++|+++|++.+.+ .+.+|||||||.++|||++|++++.++++
T Consensus 2 e~i~~Q~~iGsDI~~~LD~~t~~~~~~~~a~~sverT~rwa~~~~~~~~~~~~~l~giVQGG~~~DLR~~Sa~~l~~~~f 81 (540)
T TIGR00432 2 EIIEFQRHIGSDIGTPLDIPTPPDVDYARAESELEITLERARESIELLEGAENLLNVPVQGSTHPDLRRFAAGEAAKLGG 81 (540)
T ss_pred cHHHHHHHhCCCEEEECCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcEEEEEcCCCCHHHHHHHHHHHHhCCC
Confidence 58999999999999999888888889999999999999999999986643 35699999999999999999999999999
Q ss_pred ceEEEcCccCC-Cc--hhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhhhcceeecccCCc
Q 015981 209 SGYWIGGFGLG-ES--MEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDR 285 (397)
Q Consensus 209 ~G~~IgGl~~g-e~--~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a~~G~al~f~~~~ 285 (397)
+||+|||+... ++ .+++.++|.++.+.||++||||+||+|+|.+|+.+|++|||+|||++|++.|++|.+||.
T Consensus 82 ~gyaIGG~v~~~e~y~~~~l~~iv~~~~~~LP~dkPryL~GvG~P~~i~~~V~lGvDlFD~v~ptr~Ar~G~~lT~---- 157 (540)
T TIGR00432 82 DIYPIGAVVPLMEAYRYRDLARVILESRSALPPVEPIHLFGCGHPMLFALAVALGCDLFDSAAYALYAKDDRYLTV---- 157 (540)
T ss_pred CEEEEcCcChHhhhccHHHHHHHHHHHHhhCCCCcceeecCCCCHHHHHHHHHhCCCcccccHHHHHHhcCeEEcc----
Confidence 99999997532 32 466889999999999999999999999999999999999999999999999999999994
Q ss_pred cccccccccccCCCCCcceeeecCcccccCCCCCCCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHH
Q 015981 286 TEKNDYNYQLSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRS 365 (397)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~i~l~~~~~~~D~~pl~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~ 365 (397)
.|.++|++.+|. +++|+||+|++|||||||||.+.++ ..||++|||++|.++|+.
T Consensus 158 ----------------~G~~~L~~~~~~------~~~C~C~~C~~ysrayL~hL~~~~~---~~Lla~HNL~~~~~~m~~ 212 (540)
T TIGR00432 158 ----------------YGTKKLEELNLQ------YFPCSCPVCSNYTPEELRRMEKNER---ERLIAEHNLYVSFQEIET 212 (540)
T ss_pred ----------------Ccceehhhcccc------CCCCCCccccccCHHHHHHhhhccH---HHHHHHHHHHHHHHHHHH
Confidence 478888877763 4689999999999999999998886 699999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 015981 366 IREAIKEGCFEQFQKKFVQSRR 387 (397)
Q Consensus 366 iR~aI~~g~l~~~~~~f~~~~~ 387 (397)
||++|++|+|++|++++.+..-
T Consensus 213 iR~aI~~g~l~e~ve~r~R~hP 234 (540)
T TIGR00432 213 IKQAIKDGSLFELVEERVRAHP 234 (540)
T ss_pred HHHHHHcCCHHHHHHHHHhhCH
Confidence 9999999999999999886554
No 12
>PHA01745 hypothetical protein
Probab=98.51 E-value=4.1e-07 Score=85.31 Aligned_cols=164 Identities=8% Similarity=-0.041 Sum_probs=112.5
Q ss_pred cCCCCceeEeecCCccCCccCCCCCCCCceEEEcCCCceecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHH
Q 015981 86 VGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPCGRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDR 165 (397)
Q Consensus 86 ~~~~~~~~~~sg~~~~~~~~~~~~~~~~gv~~~s~~G~~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sver 165 (397)
++|.+-+.+||||+|+. ..| ..++++++.+.-+.+.+|.+++||-+.. ..+.+ +|
T Consensus 31 l~~e~E~WVDSGGYQil-----------------~~g-i~i~vd~V~ekYk~idA~~y~SLDiP~~-~dp~d------~k 85 (306)
T PHA01745 31 ITWKNETWVDSGGYQIM-----------------LYN-LKISVDDVLDKYKTYNAYAFFSLDIPSI-FEPLS------RK 85 (306)
T ss_pred ccccceEEEecCchhhh-----------------hcC-CCCCHHHHHHHHHhcchhheeecCCCCc-CCChh------hh
Confidence 79999999999999964 244 7899999999999999999999954443 33333 25
Q ss_pred HHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCC---chhhHHHHHHHHHcCCCCCCcc
Q 015981 166 TVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGE---SMEERPSLLNAVTDNLPKDWPR 242 (397)
Q Consensus 166 T~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge---~~~~~~~~v~~~~~~Lp~~kpr 242 (397)
+.+..+..-..-+--..++++++.- ..+.-.++.+...+- .+-.|+||+.... +...-..++..+... -++.
T Consensus 86 Nf~~feyLy~~ve~~~~vIPViH~Y-~~e~l~~~ldfysqy-~d~iAfGG~Vp~s~~~sr~~a~~~y~~vRk~---~~~L 160 (306)
T PHA01745 86 NFEYFEYLYTKLEYIERIIPVIHLY-PVREVDEAIDFYSQY-TDYIAFGGIVASSKLKILIYAFPWYYYIRKY---VKRL 160 (306)
T ss_pred hHHHHHHHHHHhhcccceeeEEeec-CHHHHHHHHHHHHhh-hhhhhccccccHHhhhhHHHHHHHHHHHHHH---hhhh
Confidence 5554443322111012488999874 555555566666541 3367899986321 111112344444443 2357
Q ss_pred cccCCCChHHHHHHHHcCCcEEecchhHHhhhcceeecc
Q 015981 243 MICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTF 281 (397)
Q Consensus 243 ~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a~~G~al~f 281 (397)
|++|+|+|..+... +|+|.-|++-....|.+|..+.+
T Consensus 161 HvLG~gSP~~~pil--~~vdS~DTsTwr~KAaygkVilp 197 (306)
T PHA01745 161 HVLGMSAPYFRQVF--YDADSMDTSTYTVKAIHREIFWF 197 (306)
T ss_pred hccccCCchheeee--eccccccchhhhhhhhcceEecC
Confidence 99999999988877 89999999966889999999874
No 13
>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis]
Probab=98.26 E-value=1.2e-06 Score=88.91 Aligned_cols=88 Identities=24% Similarity=0.302 Sum_probs=72.3
Q ss_pred cCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhhhcceeecccCCccccccccccccCCCCCcceeeecCcccc
Q 015981 234 DNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYR 313 (397)
Q Consensus 234 ~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a~~G~al~f~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~ 313 (397)
...| ++.++.|+..|..|..+|++|||.||.++.-..|..|+.||- .+
T Consensus 92 ~~~p--~~~~~s~~~~P~~iplLvYlGvD~fD~~~~~i~~~~g~~ft~--------------------~~---------- 139 (519)
T COG1549 92 YRFP--KALYASGLADPENIPLLVYLGVDLFDDSLAKIYAYEGLYFTP--------------------FG---------- 139 (519)
T ss_pred ccCC--CceeecCCCChhhhhhHHhhCcchhhhHHHHHHHhcCccccc--------------------cc----------
Confidence 3445 788999999999999999999999999999999999999872 11
Q ss_pred cCCCCCCCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 015981 314 KDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFV 383 (397)
Q Consensus 314 ~D~~pl~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~ 383 (397)
.+ .+| ..+.-||..++...+..+|++|++|+|+++++.+.
T Consensus 140 --~~-------------~~~---------------ed~~~~n~~~l~~~l~~vr~aI~~G~LR~~VE~a~ 179 (519)
T COG1549 140 --IS-------------FDR---------------EDLPRDNVEFLREMLERVRRAIRNGTLRELVEKAL 179 (519)
T ss_pred --cc-------------hhh---------------hhcccccHHHHHHHHHHHHHHHhcCcHHHHHHHHh
Confidence 00 111 12467999999999999999999999999999543
No 14
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=95.67 E-value=0.28 Score=51.31 Aligned_cols=127 Identities=13% Similarity=0.127 Sum_probs=88.2
Q ss_pred hhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEee----cCCCCHHHHHHHHHHHH
Q 015981 129 VEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSI----VGGSNIEERKRCAQEVA 204 (397)
Q Consensus 129 e~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~i----qGg~~~~lR~~sa~~l~ 204 (397)
+..++.....|.|++-.+ |.+... +.++.+.++++++- .. .-+.| ..-...+.-.+.++++.
T Consensus 100 ~~fv~~a~~~Gidi~RIf-d~lndv-------~nl~~ai~~vk~ag----~~--~~~~i~yt~sp~~t~e~~~~~a~~l~ 165 (499)
T PRK12330 100 DRFVEKSAENGMDVFRVF-DALNDP-------RNLEHAMKAVKKVG----KH--AQGTICYTVSPIHTVEGFVEQAKRLL 165 (499)
T ss_pred HHHHHHHHHcCCCEEEEE-ecCChH-------HHHHHHHHHHHHhC----Ce--EEEEEEEecCCCCCHHHHHHHHHHHH
Confidence 556777777899998776 433321 34444455554431 11 11111 22246777888899999
Q ss_pred hcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccC---CC-ChHHHHHHHHcCCcEEecchh
Q 015981 205 VRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICG---LG-LPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 205 ~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G---~g-~P~~il~~v~~GvD~FD~~~p 269 (397)
+.|++-+.|.-....-.+.+..++|+++.+.+|.+.|.+++. .| .....+.|++.|+|.||++.-
T Consensus 166 ~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~ 234 (499)
T PRK12330 166 DMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAIS 234 (499)
T ss_pred HcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeecc
Confidence 999999988776655677888999999999998778875542 33 477899999999999999953
No 15
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=95.14 E-value=0.27 Score=46.63 Aligned_cols=141 Identities=16% Similarity=0.079 Sum_probs=85.1
Q ss_pred hhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCC--CeEEe-ecCC--CCHHHHHHHHHHH
Q 015981 129 VEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGG--AVFGS-IVGG--SNIEERKRCAQEV 203 (397)
Q Consensus 129 e~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~--~lf~~-iqGg--~~~~lR~~sa~~l 203 (397)
++.++.....+.|.+....+..+ ....+...+..+.....+.++++...+.+ ..+.+ --.+ .+.+.-.+.++.+
T Consensus 77 ~~~i~~a~~~g~~~i~i~~~~s~-~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~ 155 (265)
T cd03174 77 EKGIERALEAGVDEVRIFDSASE-THSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKAL 155 (265)
T ss_pred hhhHHHHHhCCcCEEEEEEecCH-HHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHH
Confidence 66677777778888766533221 11111111122222222222222211112 22222 2344 7888888889999
Q ss_pred HhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHHHcCCcEEecchhHH
Q 015981 204 AVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGVAAGVDLFDSAYIYH 271 (397)
Q Consensus 204 ~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v~~GvD~FD~~~p~~ 271 (397)
.+.+++.+.+.-......+++..++++.+.+.+|. .|. |.+ -.| .....+.|+..|+|.||++..-.
T Consensus 156 ~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~-~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~ 226 (265)
T cd03174 156 EEAGADEISLKDTVGLATPEEVAELVKALREALPD-VPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGL 226 (265)
T ss_pred HHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCC-CeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccc
Confidence 99999888876554456778889999999998875 564 333 223 37788999999999999996543
No 16
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]
Probab=94.75 E-value=0.49 Score=47.74 Aligned_cols=124 Identities=20% Similarity=0.186 Sum_probs=83.9
Q ss_pred hhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCC--C---eEEeecCCCCHHHHHHHHHH
Q 015981 128 PVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGG--A---VFGSIVGGSNIEERKRCAQE 202 (397)
Q Consensus 128 pe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~--~---lf~~iqGg~~~~lR~~sa~~ 202 (397)
.+.+++-...-|-|++=.+ |...-. |.++.+-++.+.+.... . ...+|+ ..+.-.+-+++
T Consensus 100 Ve~Fv~ka~~nGidvfRiF-DAlND~-----------RNl~~ai~a~kk~G~h~q~~i~YT~sPvH---t~e~yv~~ake 164 (472)
T COG5016 100 VEKFVEKAAENGIDVFRIF-DALNDV-----------RNLKTAIKAAKKHGAHVQGTISYTTSPVH---TLEYYVELAKE 164 (472)
T ss_pred HHHHHHHHHhcCCcEEEec-hhccch-----------hHHHHHHHHHHhcCceeEEEEEeccCCcc---cHHHHHHHHHH
Confidence 3667777778899999888 433321 12222233333332211 1 223332 45667778999
Q ss_pred HHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCccccc--C-CC-ChHHHHHHHHcCCcEEecch
Q 015981 203 VAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMIC--G-LG-LPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~--G-~g-~P~~il~~v~~GvD~FD~~~ 268 (397)
+.+++++-++|=-.+.--++.+-+++|+++.+.+| -|.+++ - .| .+...+.+++.|+|++|++.
T Consensus 165 l~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~--~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAi 232 (472)
T COG5016 165 LLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP--VPVELHTHATSGMAEMTYLKAVEAGVDGIDTAI 232 (472)
T ss_pred HHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC--CeeEEecccccchHHHHHHHHHHhCcchhhhhh
Confidence 99999999998776655677778999999999988 565443 2 23 58888999999999999983
No 17
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members. are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....
Probab=94.24 E-value=0.2 Score=46.96 Aligned_cols=135 Identities=18% Similarity=0.165 Sum_probs=84.7
Q ss_pred hhhHHHHHHhcCCcEEEEcCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeec-CCCCHHHHHHH
Q 015981 128 PVEYMEMITSMKPNLWATLADEVPA-------WANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIV-GGSNIEERKRC 199 (397)
Q Consensus 128 pe~~~~~q~~i~pDi~~~L~d~~~~-------~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iq-Gg~~~~lR~~s 199 (397)
.+..++.....+.|++..+ ..... ..+.+.....+....+++++. . ...-|+... +..+.+...+.
T Consensus 69 i~~~~~~~~~~g~~~i~i~-~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~---g--~~v~~~~~~~~~~~~~~~~~~ 142 (237)
T PF00682_consen 69 IERAVEAAKEAGIDIIRIF-ISVSDLHIRKNLNKSREEALERIEEAVKYAKEL---G--YEVAFGCEDASRTDPEELLEL 142 (237)
T ss_dssp HHHHHHHHHHTTSSEEEEE-EETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHT---T--SEEEEEETTTGGSSHHHHHHH
T ss_pred HHHHHHhhHhccCCEEEec-CcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhc---C--CceEeCccccccccHHHHHHH
Confidence 3444455567899998665 22221 122333344444444444321 1 112455544 44677888888
Q ss_pred HHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc---CCCChHHHHHHHHcCCcEEecchhH
Q 015981 200 AQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC---GLGLPEEVLQGVAAGVDLFDSAYIY 270 (397)
Q Consensus 200 a~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~---G~g~P~~il~~v~~GvD~FD~~~p~ 270 (397)
++.+.+.+++.+.|.--...-.+++..++++.+.+.+|. .|. |.+ |.+ ....+.++..|+|.||++.--
T Consensus 143 ~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~-~~l~~H~Hnd~Gla-~An~laA~~aGa~~id~t~~G 216 (237)
T PF00682_consen 143 AEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPD-IPLGFHAHNDLGLA-VANALAALEAGADRIDGTLGG 216 (237)
T ss_dssp HHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTT-SEEEEEEBBTTS-H-HHHHHHHHHTT-SEEEEBGGG
T ss_pred HHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccC-CeEEEEecCCccch-hHHHHHHHHcCCCEEEccCcc
Confidence 999999999988887544456778889999999999997 664 443 443 778899999999999999643
No 18
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=93.97 E-value=0.41 Score=46.65 Aligned_cols=82 Identities=15% Similarity=0.134 Sum_probs=62.8
Q ss_pred eecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHHHcCC
Q 015981 186 SIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGVAAGV 261 (397)
Q Consensus 186 ~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v~~Gv 261 (397)
+..|-.+.+...+.++.+.+.|++.+.|.-....-.+.+..++++.+.+.+|. .|. |.+ -.| .....+.|++.|+
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~-~~i~~H~Hn~~Gla~AN~laA~~aG~ 225 (287)
T PRK05692 147 PYEGEVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPA-ERLAGHFHDTYGQALANIYASLEEGI 225 (287)
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCC-CeEEEEecCCCCcHHHHHHHHHHhCC
Confidence 33455678888899999999999988876554445778889999999988873 453 444 233 3678899999999
Q ss_pred cEEecch
Q 015981 262 DLFDSAY 268 (397)
Q Consensus 262 D~FD~~~ 268 (397)
|.||++.
T Consensus 226 ~~id~s~ 232 (287)
T PRK05692 226 TVFDASV 232 (287)
T ss_pred CEEEEEc
Confidence 9999995
No 19
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=93.96 E-value=0.45 Score=46.06 Aligned_cols=80 Identities=23% Similarity=0.194 Sum_probs=62.0
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHHHcCCcE
Q 015981 188 VGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGVAAGVDL 263 (397)
Q Consensus 188 qGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v~~GvD~ 263 (397)
.|-.+.+...+.++.+.+.|++.+.|.-....-.+.+..++++.+.+.+| +.|. |.+ -.| .....+.|++.|+|.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~~i~~H~Hnd~GlA~AN~laA~~aGa~~ 221 (274)
T cd07938 143 EGEVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFP-DEKLALHFHDTRGQALANILAALEAGVRR 221 (274)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCC-CCeEEEEECCCCChHHHHHHHHHHhCCCE
Confidence 34457788888899999999988887655445677888999999998887 3564 444 233 477889999999999
Q ss_pred Eecch
Q 015981 264 FDSAY 268 (397)
Q Consensus 264 FD~~~ 268 (397)
||++.
T Consensus 222 id~t~ 226 (274)
T cd07938 222 FDSSV 226 (274)
T ss_pred EEEec
Confidence 99985
No 20
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in
Probab=93.94 E-value=0.56 Score=45.30 Aligned_cols=147 Identities=14% Similarity=0.090 Sum_probs=87.5
Q ss_pred hhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCC--eEEee---cC-CCCHHHHHHHHHH
Q 015981 129 VEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGA--VFGSI---VG-GSNIEERKRCAQE 202 (397)
Q Consensus 129 e~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~--lf~~i---qG-g~~~~lR~~sa~~ 202 (397)
+.-++.....|.|++..+ .........+...++.+.+++.+.++++.-++.+. .+.+. .| -.+.+.-.+.++.
T Consensus 81 ~~~~~~a~~~g~~~i~i~-~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~ 159 (273)
T cd07941 81 DPNLQALLEAGTPVVTIF-GKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKA 159 (273)
T ss_pred hHHHHHHHhCCCCEEEEE-EcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHH
Confidence 345566667788876443 22111111222333444555555555543222222 23222 33 3456777777888
Q ss_pred HHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHHHcCCcEEecchhHHhhhcce
Q 015981 203 VAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGVAAGVDLFDSAYIYHLTIGGF 277 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v~~GvD~FD~~~p~~~a~~G~ 277 (397)
+.+.+++.+.|.--...-.+++..++++.+.+.+|. .|. |.+ -.| .....+.++..|+|.||++..-.-.+.|.
T Consensus 160 ~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~-~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~GlGeraGn 237 (273)
T cd07941 160 AAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPG-VPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGYGERCGN 237 (273)
T ss_pred HHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCC-CeeEEEecCCCCcHHHHHHHHHHcCCCEEEEecccccccccc
Confidence 888899888776544446677889999999988873 453 444 233 36788899999999999996543333343
No 21
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=93.05 E-value=0.86 Score=45.64 Aligned_cols=80 Identities=16% Similarity=0.067 Sum_probs=62.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCc--cccc-CCC-ChHHHHHHHHcCCcE
Q 015981 188 VGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWP--RMIC-GLG-LPEEVLQGVAAGVDL 263 (397)
Q Consensus 188 qGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kp--r~l~-G~g-~P~~il~~v~~GvD~ 263 (397)
.|-.+.+...+.++++.+.|++-+.|.-....-.+.+..++++.+.+.+|. .| .|.+ -.| .....+.|++.|+|.
T Consensus 191 ~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~-~~i~~H~Hnd~GlA~AN~lAA~~aGa~~ 269 (347)
T PLN02746 191 EGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPV-DKLAVHFHDTYGQALANILVSLQMGIST 269 (347)
T ss_pred cCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCC-CeEEEEECCCCChHHHHHHHHHHhCCCE
Confidence 355678888889999999999998887655456778889999999888873 33 3454 223 377899999999999
Q ss_pred Eecch
Q 015981 264 FDSAY 268 (397)
Q Consensus 264 FD~~~ 268 (397)
||++.
T Consensus 270 vd~sv 274 (347)
T PLN02746 270 VDSSV 274 (347)
T ss_pred EEEec
Confidence 99995
No 22
>PRK14041 oxaloacetate decarboxylase; Provisional
Probab=93.03 E-value=1.7 Score=45.33 Aligned_cols=124 Identities=17% Similarity=0.208 Sum_probs=82.8
Q ss_pred hHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeec----CCCCHHHHHHHHHHHHh
Q 015981 130 EYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIV----GGSNIEERKRCAQEVAV 205 (397)
Q Consensus 130 ~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iq----Gg~~~~lR~~sa~~l~~ 205 (397)
.+++...+.|.|++-.+ |.... .+.++++.+.+++. . ..+-+.|. .-...+.-.+.++++.+
T Consensus 99 ~fv~~A~~~Gvd~irif-~~lnd-------~~n~~~~i~~ak~~----G--~~v~~~i~~t~~p~~t~e~~~~~a~~l~~ 164 (467)
T PRK14041 99 LFVKKVAEYGLDIIRIF-DALND-------IRNLEKSIEVAKKH----G--AHVQGAISYTVSPVHTLEYYLEFARELVD 164 (467)
T ss_pred HHHHHHHHCCcCEEEEE-EeCCH-------HHHHHHHHHHHHHC----C--CEEEEEEEeccCCCCCHHHHHHHHHHHHH
Confidence 35666677799987665 32221 23455566555431 1 11222221 12356777778889999
Q ss_pred cCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCccccc---CCC-ChHHHHHHHHcCCcEEecchh
Q 015981 206 RNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMIC---GLG-LPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 206 ~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~---G~g-~P~~il~~v~~GvD~FD~~~p 269 (397)
.|++.+.|.-....-.+.+..++++.+.+.++ .|.+++ ..| .....+.|++.|+|.||++..
T Consensus 165 ~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~--vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~ 230 (467)
T PRK14041 165 MGVDSICIKDMAGLLTPKRAYELVKALKKKFG--VPVEVHSHCTTGLASLAYLAAVEAGADMFDTAIS 230 (467)
T ss_pred cCCCEEEECCccCCcCHHHHHHHHHHHHHhcC--CceEEEecCCCCcHHHHHHHHHHhCCCEEEeecc
Confidence 99999988776655677888999999988875 676544 234 478899999999999999964
No 23
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=92.92 E-value=1 Score=43.01 Aligned_cols=86 Identities=12% Similarity=-0.020 Sum_probs=63.5
Q ss_pred eEEeecCC-CCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHH
Q 015981 183 VFGSIVGG-SNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGV 257 (397)
Q Consensus 183 lf~~iqGg-~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v 257 (397)
.|++.-.+ .+.+...+.++.+.+.+++.+.|.--.....+++..+++..+.+.+| .|. |.+ -.| .....+.|+
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~--~~l~~H~Hn~~Gla~An~laAi 204 (259)
T cd07939 127 SVGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATD--LPLEFHAHNDLGLATANTLAAV 204 (259)
T ss_pred EEeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC--CeEEEEecCCCChHHHHHHHHH
Confidence 45555443 66777888888888899998888765445677888999999988887 443 443 222 357888999
Q ss_pred HcCCcEEecchhH
Q 015981 258 AAGVDLFDSAYIY 270 (397)
Q Consensus 258 ~~GvD~FD~~~p~ 270 (397)
..|+|.||++.--
T Consensus 205 ~aG~~~vd~s~~G 217 (259)
T cd07939 205 RAGATHVSVTVNG 217 (259)
T ss_pred HhCCCEEEEeccc
Confidence 9999999999643
No 24
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=92.90 E-value=1.3 Score=42.56 Aligned_cols=87 Identities=16% Similarity=0.125 Sum_probs=64.1
Q ss_pred eEEeecCC-CCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCC-CCcc--ccc-CCC-ChHHHHHH
Q 015981 183 VFGSIVGG-SNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPK-DWPR--MIC-GLG-LPEEVLQG 256 (397)
Q Consensus 183 lf~~iqGg-~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~-~kpr--~l~-G~g-~P~~il~~ 256 (397)
.|++..++ .+++.....++++.+.|++.+.|.--...-.+++..++++.+.+.+|. +.|. |.+ ..| .....+.|
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laA 210 (268)
T cd07940 131 EFSAEDATRTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAA 210 (268)
T ss_pred EEeeecCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHH
Confidence 45555444 567777888888888999988887654445677889999999988874 3553 444 233 36788899
Q ss_pred HHcCCcEEecchh
Q 015981 257 VAAGVDLFDSAYI 269 (397)
Q Consensus 257 v~~GvD~FD~~~p 269 (397)
+..|+|.||++..
T Consensus 211 i~aG~~~iD~s~~ 223 (268)
T cd07940 211 VEAGARQVECTIN 223 (268)
T ss_pred HHhCCCEEEEEee
Confidence 9999999999964
No 25
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=92.83 E-value=2.7 Score=40.42 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=29.6
Q ss_pred HHHHHHHHHcCCCCCCcccc-cCCCChHHHHHHHHcCCcEEecc
Q 015981 225 RPSLLNAVTDNLPKDWPRMI-CGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 225 ~~~~v~~~~~~Lp~~kpr~l-~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
..+.++.+.... +.|..+ +|+.+|+++-.+...|+|.+-.-
T Consensus 190 ~~~~i~~ir~~t--~~Pi~vGFGI~~~e~~~~~~~~GADGvVVG 231 (263)
T CHL00200 190 LKKLIETIKKMT--NKPIILGFGISTSEQIKQIKGWNINGIVIG 231 (263)
T ss_pred HHHHHHHHHHhc--CCCEEEECCcCCHHHHHHHHhcCCCEEEEC
Confidence 344555555532 678776 78889999999999999976544
No 26
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=92.50 E-value=2.4 Score=42.36 Aligned_cols=142 Identities=15% Similarity=0.145 Sum_probs=84.9
Q ss_pred ecChhhHHHHHHhcC--CcEEEEcCCCCCCCCC--HHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHH
Q 015981 125 LIKPVEYMEMITSMK--PNLWATLADEVPAWAN--NKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCA 200 (397)
Q Consensus 125 ~ltpe~~~~~q~~i~--pDi~~~L~d~~~~~~~--~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa 200 (397)
.-+.++|.+..+.++ +|.+..= -.||.... ..+....+.+-+++.++.......+-+++.=+-.+...+.-.+.+
T Consensus 153 ~~~~~d~~~~~~~~~~~ad~lelN-~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp~~~~~~~~~ia 231 (344)
T PRK05286 153 EDAVDDYLICLEKLYPYADYFTVN-ISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAPDLSDEELDDIA 231 (344)
T ss_pred ccCHHHHHHHHHHHHhhCCEEEEE-ccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCCCCCHHHHHHHH
Confidence 346789999999998 7876432 24443211 112233444556666555431111124665555444443445566
Q ss_pred HHHHhcCCceEEEcCccC---------------CCc-h---hhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcC
Q 015981 201 QEVAVRNVSGYWIGGFGL---------------GES-M---EERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAG 260 (397)
Q Consensus 201 ~~l~~~~~~G~~IgGl~~---------------ge~-~---~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~G 260 (397)
+.+.+.|++|+.+.+--. |-+ . ..-.+.+..+.+.++.+-|.... |+.+++++...+..|
T Consensus 232 ~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~~~ipIig~GGI~s~eda~e~l~aG 311 (344)
T PRK05286 232 DLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELGGRLPIIGVGGIDSAEDAYEKIRAG 311 (344)
T ss_pred HHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcC
Confidence 677778999988765210 111 0 12345677777777666776644 888999999999999
Q ss_pred CcEEecc
Q 015981 261 VDLFDSA 267 (397)
Q Consensus 261 vD~FD~~ 267 (397)
+|.+-..
T Consensus 312 Ad~V~v~ 318 (344)
T PRK05286 312 ASLVQIY 318 (344)
T ss_pred CCHHHHH
Confidence 9876544
No 27
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=92.45 E-value=3.2 Score=41.17 Aligned_cols=142 Identities=13% Similarity=0.067 Sum_probs=82.7
Q ss_pred ChhhHHHHHHhcC--CcEEEEcCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHH
Q 015981 127 KPVEYMEMITSMK--PNLWATLADEVPAWANN--KRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQE 202 (397)
Q Consensus 127 tpe~~~~~q~~i~--pDi~~~L~d~~~~~~~~--kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~ 202 (397)
..++|.+..+.++ +|.+.. .-.||..... ......+++-++++++......+.-.++.=+-.+...+.-.+.++.
T Consensus 146 ~~~d~~~~~~~~~~~ad~iel-N~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~~~~~~~~~~~ia~~ 224 (327)
T cd04738 146 AVEDYVIGVRKLGPYADYLVV-NVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIAPDLSDEELEDIADV 224 (327)
T ss_pred cHHHHHHHHHHHHhhCCEEEE-ECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeCCCCCHHHHHHHHHH
Confidence 4688888888877 776543 2344433211 1122334444555555443111112355555444444444566777
Q ss_pred HHhcCCceEEEcCc-------------------cCCCchhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCc
Q 015981 203 VAVRNVSGYWIGGF-------------------GLGESMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVD 262 (397)
Q Consensus 203 l~~~~~~G~~IgGl-------------------~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD 262 (397)
+.+.|++|+.+-+- +.......-.+.+..+.+.++.+.|.... |+.++.++..++..|+|
T Consensus 225 l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~~~ipIi~~GGI~t~~da~e~l~aGAd 304 (327)
T cd04738 225 ALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTGGKIPIIGVGGISSGEDAYEKIRAGAS 304 (327)
T ss_pred HHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHHHHcCCC
Confidence 77889999986441 11111112246677777777666776655 78899999999999999
Q ss_pred EEecchh
Q 015981 263 LFDSAYI 269 (397)
Q Consensus 263 ~FD~~~p 269 (397)
.+-..-+
T Consensus 305 ~V~vg~~ 311 (327)
T cd04738 305 LVQLYTG 311 (327)
T ss_pred HHhccHH
Confidence 8776543
No 28
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=92.39 E-value=1.7 Score=46.58 Aligned_cols=126 Identities=10% Similarity=0.086 Sum_probs=84.9
Q ss_pred hhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEee----cCCCCHHHHHHHHHHHH
Q 015981 129 VEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSI----VGGSNIEERKRCAQEVA 204 (397)
Q Consensus 129 e~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~i----qGg~~~~lR~~sa~~l~ 204 (397)
+.+++.....|-|++=.+ |.+... +.++.+.++++++ . ....+.| -.-...+.-.+.++++.
T Consensus 99 ~~~v~~a~~~Gidv~Rif-d~lnd~-------~n~~~~i~~~k~~----G--~~~~~~i~yt~sp~~t~e~~~~~ak~l~ 164 (596)
T PRK14042 99 RAFVKLAVNNGVDVFRVF-DALNDA-------RNLKVAIDAIKSH----K--KHAQGAICYTTSPVHTLDNFLELGKKLA 164 (596)
T ss_pred HHHHHHHHHcCCCEEEEc-ccCcch-------HHHHHHHHHHHHc----C--CEEEEEEEecCCCCCCHHHHHHHHHHHH
Confidence 346666778889998887 444321 2334455555432 1 1122221 12246788888899999
Q ss_pred hcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCccccc---CCC-ChHHHHHHHHcCCcEEecchhH
Q 015981 205 VRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMIC---GLG-LPEEVLQGVAAGVDLFDSAYIY 270 (397)
Q Consensus 205 ~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~---G~g-~P~~il~~v~~GvD~FD~~~p~ 270 (397)
+.|++-+.|--....-.+.+..++++++.+.++ .|.+++ ..| .....+.|++.|+|.||++..-
T Consensus 165 ~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~--ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~g 232 (596)
T PRK14042 165 EMGCDSIAIKDMAGLLTPTVTVELYAGLKQATG--LPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISS 232 (596)
T ss_pred HcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcC--CEEEEEeCCCCCcHHHHHHHHHHhCCCEEEecccc
Confidence 999999988766555677788999999988874 676543 222 3788899999999999999643
No 29
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=92.04 E-value=2.3 Score=41.30 Aligned_cols=79 Identities=10% Similarity=-0.042 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHHHcCCcEEec
Q 015981 191 SNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 191 ~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v~~GvD~FD~ 266 (397)
.+++...+.++.+.+.|++.+.|.-....-.+.+..++++.+.+.+| +.|. |.+ -.| .....+.|+..|+|.||+
T Consensus 144 ~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~-~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~ 222 (280)
T cd07945 144 DSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYP-NLHFDFHAHNDYDLAVANVLAAVKAGIKGLHT 222 (280)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCC-CCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 46788888899999999998888765545667888999999888887 3454 444 233 377889999999999999
Q ss_pred chhH
Q 015981 267 AYIY 270 (397)
Q Consensus 267 ~~p~ 270 (397)
+.--
T Consensus 223 s~~G 226 (280)
T cd07945 223 TVNG 226 (280)
T ss_pred eccc
Confidence 9643
No 30
>PRK09282 pyruvate carboxylase subunit B; Validated
Probab=91.97 E-value=2.9 Score=44.99 Aligned_cols=126 Identities=19% Similarity=0.232 Sum_probs=85.5
Q ss_pred hhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEee--cC--CCCHHHHHHHHHHH
Q 015981 128 PVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSI--VG--GSNIEERKRCAQEV 203 (397)
Q Consensus 128 pe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~i--qG--g~~~~lR~~sa~~l 203 (397)
.+..++...+.|.|++-.+ |.... . +.+.++.+++++. . ..+-+.| .+ -...+.-.+.++++
T Consensus 98 v~~~v~~A~~~Gvd~irif-~~lnd---~----~n~~~~i~~ak~~----G--~~v~~~i~~t~~p~~t~~~~~~~a~~l 163 (592)
T PRK09282 98 VEKFVEKAAENGIDIFRIF-DALND---V----RNMEVAIKAAKKA----G--AHVQGTISYTTSPVHTIEKYVELAKEL 163 (592)
T ss_pred hHHHHHHHHHCCCCEEEEE-EecCh---H----HHHHHHHHHHHHc----C--CEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 3556677777899998666 33322 1 3455555555431 1 1111112 11 13567888889999
Q ss_pred HhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCccccc---CCC-ChHHHHHHHHcCCcEEecchh
Q 015981 204 AVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMIC---GLG-LPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 204 ~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~---G~g-~P~~il~~v~~GvD~FD~~~p 269 (397)
.+.|++-+.|--....-.+.+..++++.+.+.++ .|.+++ ..| .....+.|++.|+|.||++..
T Consensus 164 ~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~--~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~ 231 (592)
T PRK09282 164 EEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD--LPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAIS 231 (592)
T ss_pred HHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC--CeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeecc
Confidence 9999999998776666777888999999988875 666443 333 478899999999999999964
No 31
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=91.86 E-value=1.7 Score=41.70 Aligned_cols=86 Identities=13% Similarity=0.026 Sum_probs=61.9
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHHHcCCcEEec
Q 015981 191 SNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 191 ~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v~~GvD~FD~ 266 (397)
.+.+...+.++.+.+.+++.+.|.-....-.+++..++++.+.+.+| .|. |.+ -.| .....+.++..|+|.||+
T Consensus 138 ~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~--~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~ 215 (262)
T cd07948 138 SDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS--CDIEFHGHNDTGCAIANAYAALEAGATHIDT 215 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC--CeEEEEECCCCChHHHHHHHHHHhCCCEEEE
Confidence 45566677888888889988887665545677888999998888876 554 443 123 367788899999999999
Q ss_pred chhHHhhhccee
Q 015981 267 AYIYHLTIGGFA 278 (397)
Q Consensus 267 ~~p~~~a~~G~a 278 (397)
+.--.--+.|.+
T Consensus 216 s~~GlGeraGn~ 227 (262)
T cd07948 216 TVLGIGERNGIT 227 (262)
T ss_pred eccccccccCCc
Confidence 975443344444
No 32
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=91.66 E-value=4.1 Score=40.64 Aligned_cols=91 Identities=15% Similarity=-0.005 Sum_probs=67.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHHHcCCcE
Q 015981 188 VGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGVAAGVDL 263 (397)
Q Consensus 188 qGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v~~GvD~ 263 (397)
-+...++.-.+.++.+.+.+.+.+.|---...-.+++..++++.+.+.++++.|. |.+ ..| .....+.|++.|+|.
T Consensus 138 a~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~ 217 (337)
T PRK08195 138 SHMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATR 217 (337)
T ss_pred ccCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCE
Confidence 3456677777888888888998877765444466788899999999999767775 443 333 477889999999999
Q ss_pred EecchhHHhhhccee
Q 015981 264 FDSAYIYHLTIGGFA 278 (397)
Q Consensus 264 FD~~~p~~~a~~G~a 278 (397)
+|++..-.-.+.|.+
T Consensus 218 iD~Sl~GlG~~aGN~ 232 (337)
T PRK08195 218 IDGSLAGLGAGAGNT 232 (337)
T ss_pred EEecChhhcccccCc
Confidence 999976544444433
No 33
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit. This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.
Probab=91.63 E-value=2.6 Score=45.27 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=87.1
Q ss_pred hhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCC-eEEeec--CC--CCHHHHHHHHHHH
Q 015981 129 VEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGA-VFGSIV--GG--SNIEERKRCAQEV 203 (397)
Q Consensus 129 e~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~-lf~~iq--Gg--~~~~lR~~sa~~l 203 (397)
+..++.....|.|++-.+ |.... . +.++++.+++++. +. +-+.|. +. .+.+.-.+.++++
T Consensus 94 ~~~v~~a~~~Gvd~irif-~~lnd---~----~n~~~~i~~ak~~-------G~~v~~~i~~t~~p~~~~~~~~~~~~~~ 158 (582)
T TIGR01108 94 ERFVKKAVENGMDVFRIF-DALND---P----RNLQAAIQAAKKH-------GAHAQGTISYTTSPVHTLETYLDLAEEL 158 (582)
T ss_pred HHHHHHHHHCCCCEEEEE-EecCc---H----HHHHHHHHHHHHc-------CCEEEEEEEeccCCCCCHHHHHHHHHHH
Confidence 445666677789987665 32221 1 3456666666532 11 111121 11 3567788889999
Q ss_pred HhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccc--c-CCC-ChHHHHHHHHcCCcEEecchhHHhhhcc
Q 015981 204 AVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMI--C-GLG-LPEEVLQGVAAGVDLFDSAYIYHLTIGG 276 (397)
Q Consensus 204 ~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l--~-G~g-~P~~il~~v~~GvD~FD~~~p~~~a~~G 276 (397)
.+.|.+.+.|.-....-.+.+..++++.+.+.+| .|.++ + ..| .....+.|++.|+|.||++.--.-.+.|
T Consensus 159 ~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~--~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~~tG 233 (582)
T TIGR01108 159 LEMGVDSICIKDMAGILTPKAAYELVSALKKRFG--LPVHLHSHATTGMAEMALLKAIEAGADGIDTAISSMSGGTS 233 (582)
T ss_pred HHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC--CceEEEecCCCCcHHHHHHHHHHhCCCEEEecccccccccc
Confidence 9999999988776666777888999999998886 66544 3 233 4778999999999999999654333333
No 34
>PRK12331 oxaloacetate decarboxylase; Provisional
Probab=91.52 E-value=3.4 Score=42.92 Aligned_cols=127 Identities=13% Similarity=0.130 Sum_probs=81.9
Q ss_pred hhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCC-CCeEEeecCC-CCHHHHHHHHHHHHhc
Q 015981 129 VEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAG-GAVFGSIVGG-SNIEERKRCAQEVAVR 206 (397)
Q Consensus 129 e~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~-~~lf~~iqGg-~~~~lR~~sa~~l~~~ 206 (397)
++.++.....|.|++-.+ +..... . .++...+++++. ... +..+....+- ...+.-.+.++++.+.
T Consensus 99 ~~~v~~A~~~Gvd~irif-~~lnd~---~----n~~~~v~~ak~~----G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~ 166 (448)
T PRK12331 99 ESFVQKSVENGIDIIRIF-DALNDV---R----NLETAVKATKKA----GGHAQVAISYTTSPVHTIDYFVKLAKEMQEM 166 (448)
T ss_pred HHHHHHHHHCCCCEEEEE-EecCcH---H----HHHHHHHHHHHc----CCeEEEEEEeecCCCCCHHHHHHHHHHHHHc
Confidence 456666677799988666 332211 1 244455555432 100 0011111111 3456677788899999
Q ss_pred CCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCccccc---CCC-ChHHHHHHHHcCCcEEecchh
Q 015981 207 NVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMIC---GLG-LPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 207 ~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~---G~g-~P~~il~~v~~GvD~FD~~~p 269 (397)
|++.+.|.-....-.+.+..++|+++.+.++ .|.+++ ..| .....+.|++.|+|+||++..
T Consensus 167 Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~--~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~ 231 (448)
T PRK12331 167 GADSICIKDMAGILTPYVAYELVKRIKEAVT--VPLEVHTHATSGIAEMTYLKAIEAGADIIDTAIS 231 (448)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC--CeEEEEecCCCCcHHHHHHHHHHcCCCEEEeecc
Confidence 9999988766555677788899999988875 676543 334 478899999999999999964
No 35
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=91.15 E-value=0.88 Score=44.77 Aligned_cols=81 Identities=17% Similarity=0.270 Sum_probs=61.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEcCccCCC----chhhHHHHHHHHHcCCCCCCcccccCCC--ChHHHHHH----H
Q 015981 188 VGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGE----SMEERPSLLNAVTDNLPKDWPRMICGLG--LPEEVLQG----V 257 (397)
Q Consensus 188 qGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g--~P~~il~~----v 257 (397)
+|..|.+.-++-++.+.+.|++|+.+.|- .|| +.+|+.++++.+.+......|. +.|+| +..+.+.. -
T Consensus 23 ~g~iD~~~l~~lv~~li~~Gv~Gi~v~Gs-tGE~~~Lt~eEr~~v~~~~~~~~~grvpv-i~Gv~~~~t~~ai~~a~~A~ 100 (309)
T cd00952 23 TDTVDLDETARLVERLIAAGVDGILTMGT-FGECATLTWEEKQAFVATVVETVAGRVPV-FVGATTLNTRDTIARTRALL 100 (309)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcc-cccchhCCHHHHHHHHHHHHHHhCCCCCE-EEEeccCCHHHHHHHHHHHH
Confidence 37788888888888888899999999884 354 5588999999999888655554 56776 35555543 4
Q ss_pred HcCCcEEecchhH
Q 015981 258 AAGVDLFDSAYIY 270 (397)
Q Consensus 258 ~~GvD~FD~~~p~ 270 (397)
+.|+|-+=..-|+
T Consensus 101 ~~Gad~vlv~~P~ 113 (309)
T cd00952 101 DLGADGTMLGRPM 113 (309)
T ss_pred HhCCCEEEECCCc
Confidence 6899988777664
No 36
>PRK14040 oxaloacetate decarboxylase; Provisional
Probab=91.13 E-value=4 Score=43.87 Aligned_cols=125 Identities=15% Similarity=0.203 Sum_probs=86.2
Q ss_pred hhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCC-eEEeec----CCCCHHHHHHHHHHH
Q 015981 129 VEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGA-VFGSIV----GGSNIEERKRCAQEV 203 (397)
Q Consensus 129 e~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~-lf~~iq----Gg~~~~lR~~sa~~l 203 (397)
+..++.....|.|++-.+ |.+.. . +.++.+.+++++. +. ..+.|. .-...+.-.+.++++
T Consensus 100 ~~~v~~a~~~Gid~~rif-d~lnd---~----~~~~~ai~~ak~~-------G~~~~~~i~yt~~p~~~~~~~~~~a~~l 164 (593)
T PRK14040 100 ERFVERAVKNGMDVFRVF-DAMND---P----RNLETALKAVRKV-------GAHAQGTLSYTTSPVHTLQTWVDLAKQL 164 (593)
T ss_pred HHHHHHHHhcCCCEEEEe-eeCCc---H----HHHHHHHHHHHHc-------CCeEEEEEEEeeCCccCHHHHHHHHHHH
Confidence 556777888899998777 43322 1 2455556666542 11 112221 223467777888899
Q ss_pred HhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCccccc---CCC-ChHHHHHHHHcCCcEEecchhH
Q 015981 204 AVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMIC---GLG-LPEEVLQGVAAGVDLFDSAYIY 270 (397)
Q Consensus 204 ~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~---G~g-~P~~il~~v~~GvD~FD~~~p~ 270 (397)
.+.|++.+.|--....-.+.+..++++.+.+.+ +.|.+++ ..| .....+.|++.|+|.+|++..-
T Consensus 165 ~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~--~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~g 233 (593)
T PRK14040 165 EDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRV--DVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISS 233 (593)
T ss_pred HHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhc--CCeEEEEECCCCchHHHHHHHHHHcCCCEEEecccc
Confidence 999999998877666677788899999998887 4676544 333 4778899999999999999644
No 37
>PLN02417 dihydrodipicolinate synthase
Probab=90.71 E-value=1.2 Score=43.04 Aligned_cols=81 Identities=21% Similarity=0.273 Sum_probs=61.4
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEcCccCCC----chhhHHHHHHHHHcCCCCCCcccccCCCC--hHHHHH----HH
Q 015981 188 VGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGE----SMEERPSLLNAVTDNLPKDWPRMICGLGL--PEEVLQ----GV 257 (397)
Q Consensus 188 qGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~--P~~il~----~v 257 (397)
.|..|.+.-++-++.+.+.|++|+.+.|.. || +.+|+.++++.+.+..+...| .+.|+|+ ..+.+. +-
T Consensus 16 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~Gst-GE~~~ls~~Er~~~~~~~~~~~~~~~p-vi~gv~~~~t~~~i~~a~~a~ 93 (280)
T PLN02417 16 DGRFDLEAYDSLVNMQIENGAEGLIVGGTT-GEGQLMSWDEHIMLIGHTVNCFGGKIK-VIGNTGSNSTREAIHATEQGF 93 (280)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECccC-cchhhCCHHHHHHHHHHHHHHhCCCCc-EEEECCCccHHHHHHHHHHHH
Confidence 477888888888889999999999998854 54 557889999988888765444 4678874 555554 45
Q ss_pred HcCCcEEecchhH
Q 015981 258 AAGVDLFDSAYIY 270 (397)
Q Consensus 258 ~~GvD~FD~~~p~ 270 (397)
++|+|-+=+.-|+
T Consensus 94 ~~Gadav~~~~P~ 106 (280)
T PLN02417 94 AVGMHAALHINPY 106 (280)
T ss_pred HcCCCEEEEcCCc
Confidence 7999988777664
No 38
>PLN02591 tryptophan synthase
Probab=90.27 E-value=8.2 Score=36.89 Aligned_cols=43 Identities=26% Similarity=0.267 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHcCCCCCCcccc-cCCCChHHHHHHHHcCCcEEecc
Q 015981 223 EERPSLLNAVTDNLPKDWPRMI-CGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 223 ~~~~~~v~~~~~~Lp~~kpr~l-~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++..+.++.+.+. .+.|..+ +|+.+|+++-.+...|+|-+-.-
T Consensus 175 ~~~~~~i~~vk~~--~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVG 218 (250)
T PLN02591 175 GRVESLLQELKEV--TDKPVAVGFGISKPEHAKQIAGWGADGVIVG 218 (250)
T ss_pred hhHHHHHHHHHhc--CCCceEEeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 3345566666664 3788876 67789999999999999976654
No 39
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=90.26 E-value=2.9 Score=40.72 Aligned_cols=83 Identities=20% Similarity=0.296 Sum_probs=57.2
Q ss_pred CeEEeecCCCCHHHHHHHHHHHHhcC-CceEEE---------cCccCCCchhhHHHHHHHHHcCCCCCCcccc-cC--CC
Q 015981 182 AVFGSIVGGSNIEERKRCAQEVAVRN-VSGYWI---------GGFGLGESMEERPSLLNAVTDNLPKDWPRMI-CG--LG 248 (397)
Q Consensus 182 ~lf~~iqGg~~~~lR~~sa~~l~~~~-~~G~~I---------gGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l-~G--~g 248 (397)
.+++.|-| .+.+.=.++++.+.+.+ ++++-| ||...+.+.+...++++++.+.. +.|..+ ++ +.
T Consensus 93 p~i~si~g-~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~~~~ 169 (301)
T PRK07259 93 PIIANVAG-STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV--KVPVIVKLTPNVT 169 (301)
T ss_pred cEEEEecc-CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEEcCCCch
Confidence 46677755 45555667888888887 999977 45555666777888999888876 677654 23 23
Q ss_pred ChHHHHH-HHHcCCcEEecc
Q 015981 249 LPEEVLQ-GVAAGVDLFDSA 267 (397)
Q Consensus 249 ~P~~il~-~v~~GvD~FD~~ 267 (397)
...++.. +.+.|+|.++..
T Consensus 170 ~~~~~a~~l~~~G~d~i~~~ 189 (301)
T PRK07259 170 DIVEIAKAAEEAGADGLSLI 189 (301)
T ss_pred hHHHHHHHHHHcCCCEEEEE
Confidence 4445554 557999988753
No 40
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=90.16 E-value=6.1 Score=38.14 Aligned_cols=86 Identities=17% Similarity=0.103 Sum_probs=56.2
Q ss_pred eEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCC------------------Cch----hhHHHHHHHHHcCCCCCC
Q 015981 183 VFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLG------------------ESM----EERPSLLNAVTDNLPKDW 240 (397)
Q Consensus 183 lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~g------------------e~~----~~~~~~v~~~~~~Lp~~k 240 (397)
++.=+-++.+.+.-.+-++.+.+.+++++.+.+...+ .+. ..-.+.+..+.+.+|.+.
T Consensus 165 v~vKl~~~~~~~~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~~~i 244 (289)
T cd02810 165 LLVKLSPYFDLEDIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQLDI 244 (289)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcCCCC
Confidence 5544555566555556677777889999887542110 000 112456777777777667
Q ss_pred ccccc-CCCChHHHHHHHHcCCcEEecch
Q 015981 241 PRMIC-GLGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 241 pr~l~-G~g~P~~il~~v~~GvD~FD~~~ 268 (397)
|.... |+.++.++..++..|+|.+=..-
T Consensus 245 piia~GGI~~~~da~~~l~~GAd~V~vg~ 273 (289)
T cd02810 245 PIIGVGGIDSGEDVLEMLMAGASAVQVAT 273 (289)
T ss_pred CEEEECCCCCHHHHHHHHHcCccHheEcH
Confidence 76644 78899999999999988766553
No 41
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=90.09 E-value=3.4 Score=43.00 Aligned_cols=124 Identities=12% Similarity=0.164 Sum_probs=83.3
Q ss_pred hhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCC-eEEeec----CCCCHHHHHHHHHHH
Q 015981 129 VEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGA-VFGSIV----GGSNIEERKRCAQEV 203 (397)
Q Consensus 129 e~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~-lf~~iq----Gg~~~~lR~~sa~~l 203 (397)
+.+++.....|-||+-.+ |.+.. .+.++.+.+++++. +. ..+.|. .-...+.-.+.++++
T Consensus 108 ~~fv~~a~~~Gidi~Rif-d~lnd-------~~n~~~ai~~ak~~-------G~~~~~~i~yt~sp~~t~~y~~~~a~~l 172 (468)
T PRK12581 108 DKFISLSAQNGIDVFRIF-DALND-------PRNIQQALRAVKKT-------GKEAQLCIAYTTSPVHTLNYYLSLVKEL 172 (468)
T ss_pred HHHHHHHHHCCCCEEEEc-ccCCC-------HHHHHHHHHHHHHc-------CCEEEEEEEEEeCCcCcHHHHHHHHHHH
Confidence 346777778899999888 43331 12344455555432 11 111221 123567777888999
Q ss_pred HhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCccccc---CCC-ChHHHHHHHHcCCcEEecchh
Q 015981 204 AVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMIC---GLG-LPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 204 ~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~---G~g-~P~~il~~v~~GvD~FD~~~p 269 (397)
.+.|++.+.|.-....-.+.+..++|+++.+. + +.|.+++ ..| .....+.|++.|+|.||++..
T Consensus 173 ~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~-~-~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~ 240 (468)
T PRK12581 173 VEMGADSICIKDMAGILTPKAAKELVSGIKAM-T-NLPLIVHTHATSGISQMTYLAAVEAGADRIDTALS 240 (468)
T ss_pred HHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc-c-CCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeecc
Confidence 99999999987766556778888999988774 3 5776544 333 478899999999999999964
No 42
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=89.92 E-value=6 Score=38.23 Aligned_cols=80 Identities=19% Similarity=0.119 Sum_probs=61.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHHHcCCcEE
Q 015981 189 GGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGVAAGVDLF 264 (397)
Q Consensus 189 Gg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v~~GvD~F 264 (397)
+..+.+...+.++++.+.+++.+.|.--...-.+++..++++.+.+.+| .|. |.+ -.| .....+.|+..|+|.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~--~~l~~H~Hnd~GlA~aN~laA~~aGa~~v 221 (275)
T cd07937 144 PVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG--LPIHLHTHDTSGLAVATYLAAAEAGVDIV 221 (275)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC--CeEEEEecCCCChHHHHHHHHHHhCCCEE
Confidence 4467788888899999999998888765545667888999999998887 554 443 233 4677888999999999
Q ss_pred ecchhH
Q 015981 265 DSAYIY 270 (397)
Q Consensus 265 D~~~p~ 270 (397)
|++..-
T Consensus 222 d~sv~G 227 (275)
T cd07937 222 DTAISP 227 (275)
T ss_pred EEeccc
Confidence 999754
No 43
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=89.48 E-value=1.8 Score=42.00 Aligned_cols=81 Identities=23% Similarity=0.321 Sum_probs=60.5
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEcCccCCC----chhhHHHHHHHHHcCCCCCCcccccCCCC--hHHHHH----HH
Q 015981 188 VGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGE----SMEERPSLLNAVTDNLPKDWPRMICGLGL--PEEVLQ----GV 257 (397)
Q Consensus 188 qGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~--P~~il~----~v 257 (397)
.|..|.+.-++-++.+.+.|++|+.+.|.. || +.+|+.++++.+.+..+...|. +.|+|. ..+.+. +.
T Consensus 16 dg~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~-GE~~~ls~~Er~~~~~~~~~~~~~~~~v-i~gv~~~~~~~~i~~a~~a~ 93 (292)
T PRK03170 16 DGSVDFAALRKLVDYLIANGTDGLVVVGTT-GESPTLTHEEHEELIRAVVEAVNGRVPV-IAGTGSNSTAEAIELTKFAE 93 (292)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCcC-CccccCCHHHHHHHHHHHHHHhCCCCcE-EeecCCchHHHHHHHHHHHH
Confidence 366788888888899999999999988753 44 5588999999888888765664 567764 444444 34
Q ss_pred HcCCcEEecchhH
Q 015981 258 AAGVDLFDSAYIY 270 (397)
Q Consensus 258 ~~GvD~FD~~~p~ 270 (397)
+.|+|-+=..-|.
T Consensus 94 ~~G~d~v~~~pP~ 106 (292)
T PRK03170 94 KAGADGALVVTPY 106 (292)
T ss_pred HcCCCEEEECCCc
Confidence 6899988877664
No 44
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=88.99 E-value=2.1 Score=41.65 Aligned_cols=80 Identities=21% Similarity=0.346 Sum_probs=60.9
Q ss_pred CCCCHHHHHHHHHHHHh-cCCceEEEcCccCCC----chhhHHHHHHHHHcCCCCCCcccccCCCC--hHHH----HHHH
Q 015981 189 GGSNIEERKRCAQEVAV-RNVSGYWIGGFGLGE----SMEERPSLLNAVTDNLPKDWPRMICGLGL--PEEV----LQGV 257 (397)
Q Consensus 189 Gg~~~~lR~~sa~~l~~-~~~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~--P~~i----l~~v 257 (397)
|..|.+--++-++.+.+ .|++|+.+.|.. || +.+|+.++++.+.+..+...| .+.|+|. ..+. -.+.
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~Gst-GE~~~Ls~eEr~~~~~~~~~~~~~~~~-viagvg~~~t~~ai~~a~~a~ 96 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGST-GEAFLLSTEEKKQVLEIVAEEAKGKVK-LIAQVGSVNTAEAQELAKYAT 96 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCc-cccccCCHHHHHHHHHHHHHHhCCCCC-EEecCCCCCHHHHHHHHHHHH
Confidence 77888888888889998 999999999853 54 558899999999888875444 4668875 4444 3446
Q ss_pred HcCCcEEecchhH
Q 015981 258 AAGVDLFDSAYIY 270 (397)
Q Consensus 258 ~~GvD~FD~~~p~ 270 (397)
+.|+|-+=+.-|.
T Consensus 97 ~~Gad~v~v~~P~ 109 (293)
T PRK04147 97 ELGYDAISAVTPF 109 (293)
T ss_pred HcCCCEEEEeCCc
Confidence 8999988877664
No 45
>PRK12999 pyruvate carboxylase; Reviewed
Probab=88.68 E-value=5.8 Score=46.07 Aligned_cols=84 Identities=18% Similarity=0.122 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCccccc---CCC-ChHHHHHHHHcCCcEEec
Q 015981 191 SNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMIC---GLG-LPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 191 ~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~---G~g-~P~~il~~v~~GvD~FD~ 266 (397)
.+.+.-.+.++++.+.|++-+.|--....-.+.+..++|+++.+.+ +.|.+++ -.| .....+.|++.|+|.+|+
T Consensus 688 ~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~--~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~ 765 (1146)
T PRK12999 688 YDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV--DLPIHLHTHDTSGNGLATYLAAAEAGVDIVDV 765 (1146)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc--CCeEEEEeCCCCchHHHHHHHHHHhCCCEEEe
Confidence 5778888889999999999998876665567788899999998887 4777654 233 478899999999999999
Q ss_pred chhHHhhhcc
Q 015981 267 AYIYHLTIGG 276 (397)
Q Consensus 267 ~~p~~~a~~G 276 (397)
+..-.-.+.|
T Consensus 766 av~glg~~tg 775 (1146)
T PRK12999 766 AVASMSGLTS 775 (1146)
T ss_pred cchhhcCCcC
Confidence 9654433333
No 46
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=88.53 E-value=2.2 Score=41.38 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=58.4
Q ss_pred CCCCHHHHHHHHHHHHhc-CCceEEEcCccCCC----chhhHHHHHHHHHcCCCCCCcccccCCCC--hHHHH----HHH
Q 015981 189 GGSNIEERKRCAQEVAVR-NVSGYWIGGFGLGE----SMEERPSLLNAVTDNLPKDWPRMICGLGL--PEEVL----QGV 257 (397)
Q Consensus 189 Gg~~~~lR~~sa~~l~~~-~~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~--P~~il----~~v 257 (397)
|..|.+.-++-++.+.+. |++|+.+.|. .|| +.+|+.++++.+.+......|. +.|+|. ..+.+ .+.
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~Gs-tGE~~~Lt~~Er~~~~~~~~~~~~~~~~v-iagv~~~~~~~ai~~a~~a~ 93 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDGLYVNGS-TGEGFLLSVEERKQIAEIVAEAAKGKVTL-IAHVGSLNLKESQELAKHAE 93 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEECcC-CcCcccCCHHHHHHHHHHHHHHhCCCCeE-EeccCCCCHHHHHHHHHHHH
Confidence 777888888888888888 9999999984 354 4578899999888877654444 557764 43333 456
Q ss_pred HcCCcEEecchhH
Q 015981 258 AAGVDLFDSAYIY 270 (397)
Q Consensus 258 ~~GvD~FD~~~p~ 270 (397)
+.|+|-+=..-|.
T Consensus 94 ~~Gad~v~~~~P~ 106 (288)
T cd00954 94 ELGYDAISAITPF 106 (288)
T ss_pred HcCCCEEEEeCCC
Confidence 8999988765453
No 47
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=88.47 E-value=5.3 Score=38.77 Aligned_cols=82 Identities=24% Similarity=0.301 Sum_probs=54.0
Q ss_pred CeEEeecCCCCHHHHHHHHHHHHhcCCceEEEc---------CccCCCchhhHHHHHHHHHcCCCCCCcccc-cCC--CC
Q 015981 182 AVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIG---------GFGLGESMEERPSLLNAVTDNLPKDWPRMI-CGL--GL 249 (397)
Q Consensus 182 ~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~Ig---------Gl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l-~G~--g~ 249 (397)
.+++.|-| .+.+.-.++++.+.+.+++++-|- |-..+.+++...++++++.+.. +.|..+ ++. ..
T Consensus 91 p~ivsi~g-~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~--~~Pv~vKl~~~~~~ 167 (296)
T cd04740 91 PVIASIAG-STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKAT--DVPVIVKLTPNVTD 167 (296)
T ss_pred cEEEEEec-CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhcc--CCCEEEEeCCCchh
Confidence 46666655 455555678888888889988772 2234556667788888888776 577553 232 24
Q ss_pred hHHHHH-HHHcCCcEEec
Q 015981 250 PEEVLQ-GVAAGVDLFDS 266 (397)
Q Consensus 250 P~~il~-~v~~GvD~FD~ 266 (397)
..+++. +.+.|+|.++.
T Consensus 168 ~~~~a~~~~~~G~d~i~~ 185 (296)
T cd04740 168 IVEIARAAEEAGADGLTL 185 (296)
T ss_pred HHHHHHHHHHcCCCEEEE
Confidence 556665 56799998764
No 48
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=88.32 E-value=1.7 Score=38.76 Aligned_cols=76 Identities=16% Similarity=0.218 Sum_probs=53.9
Q ss_pred EEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCCh----------HHH
Q 015981 184 FGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLP----------EEV 253 (397)
Q Consensus 184 f~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P----------~~i 253 (397)
+++.+|-.+.+.-++.++.+.+.+++|+.+.| ++++.+.+..+..+...+.|+|.+ ..+
T Consensus 3 ~~~~~~~~d~~~~~~~~~~~~~~gv~gi~~~g-----------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a 71 (201)
T cd00945 3 LTLLHPDATLEDIAKLCDEAIEYGFAAVCVNP-----------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEV 71 (201)
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCcEEEECH-----------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHH
Confidence 45566666777788888888889999999976 445555555554244456677765 355
Q ss_pred HHHHHcCCcEEecchhH
Q 015981 254 LQGVAAGVDLFDSAYIY 270 (397)
Q Consensus 254 l~~v~~GvD~FD~~~p~ 270 (397)
-.+.+.|+|.+...-|.
T Consensus 72 ~~a~~~Gad~i~v~~~~ 88 (201)
T cd00945 72 EEAIDLGADEIDVVINI 88 (201)
T ss_pred HHHHHcCCCEEEEeccH
Confidence 66788999999987554
No 49
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=88.25 E-value=12 Score=37.41 Aligned_cols=141 Identities=11% Similarity=0.134 Sum_probs=81.0
Q ss_pred ecChhhHHHHHHhcC--CcEEEEcCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHhCC--CCCCeEEeecCCCCHHHHHH
Q 015981 125 LIKPVEYMEMITSMK--PNLWATLADEVPAWANN--KRNKTSVDRTVKWLDECIARSP--AGGAVFGSIVGGSNIEERKR 198 (397)
Q Consensus 125 ~ltpe~~~~~q~~i~--pDi~~~L~d~~~~~~~~--kr~~~sverT~~w~~~~l~~~~--~~~~lf~~iqGg~~~~lR~~ 198 (397)
.-+.++|.+..+.++ +|.+..= -.||...+. -.....+..-++|.++...... ..-+++.=+-.....+--..
T Consensus 150 ~~~~~dy~~~~~~~~~~ad~iElN-lScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ 228 (335)
T TIGR01036 150 EDAKEDYAACLRKLGPLADYLVVN-VSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLED 228 (335)
T ss_pred ccCHHHHHHHHHHHhhhCCEEEEE-ccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHH
Confidence 346899999999999 7876442 244432211 1123444444666655544111 11346766665554322333
Q ss_pred HHHHHHhcCCceEEEcC-------------------ccCCCc-hhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHH
Q 015981 199 CAQEVAVRNVSGYWIGG-------------------FGLGES-MEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGV 257 (397)
Q Consensus 199 sa~~l~~~~~~G~~IgG-------------------l~~ge~-~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v 257 (397)
.++.+.+.+++|+.+-. ++ |.. ..--.+.+..+...++.+.|..-. |+.+++|+...+
T Consensus 229 ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlS-G~~i~p~al~~v~~~~~~~~~~ipiig~GGI~~~~da~e~l 307 (335)
T TIGR01036 229 IADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLS-GKPLQDKSTEIIRRLYAELQGRLPIIGVGGISSAQDALEKI 307 (335)
T ss_pred HHHHHHHhCCcEEEEECCCCccccccCccccCCCCccc-CHHHHHHHHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHH
Confidence 44555567888877532 22 111 111245566666666666676544 688999999999
Q ss_pred HcCCcEEecc
Q 015981 258 AAGVDLFDSA 267 (397)
Q Consensus 258 ~~GvD~FD~~ 267 (397)
..|+|.+-..
T Consensus 308 ~aGA~~Vqv~ 317 (335)
T TIGR01036 308 RAGASLLQIY 317 (335)
T ss_pred HcCCcHHHhh
Confidence 9999876654
No 50
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis. It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.
Probab=88.22 E-value=2.7 Score=40.59 Aligned_cols=81 Identities=25% Similarity=0.334 Sum_probs=60.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEcCccCCC----chhhHHHHHHHHHcCCCCCCcccccCCCC--hHHHHH----HH
Q 015981 188 VGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGE----SMEERPSLLNAVTDNLPKDWPRMICGLGL--PEEVLQ----GV 257 (397)
Q Consensus 188 qGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~--P~~il~----~v 257 (397)
.|..|.+.-++-++.+.+.|++|+.+.|.. || +.+|+.++++.+.+......| .+.|+|. ..+.+. +.
T Consensus 15 dg~iD~~~~~~~i~~l~~~Gv~gl~v~Gst-GE~~~lt~~Er~~l~~~~~~~~~~~~~-vi~gv~~~~~~~~~~~a~~a~ 92 (284)
T cd00950 15 DGSVDFDALERLIEFQIENGTDGLVVCGTT-GESPTLSDEEHEAVIEAVVEAVNGRVP-VIAGTGSNNTAEAIELTKRAE 92 (284)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCC-cchhhCCHHHHHHHHHHHHHHhCCCCc-EEeccCCccHHHHHHHHHHHH
Confidence 367788888888889999999999998854 44 557889999988888764444 4568874 444443 45
Q ss_pred HcCCcEEecchhH
Q 015981 258 AAGVDLFDSAYIY 270 (397)
Q Consensus 258 ~~GvD~FD~~~p~ 270 (397)
+.|+|-+=...|.
T Consensus 93 ~~G~d~v~~~~P~ 105 (284)
T cd00950 93 KAGADAALVVTPY 105 (284)
T ss_pred HcCCCEEEEcccc
Confidence 7999988777664
No 51
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=88.11 E-value=2.4 Score=41.32 Aligned_cols=80 Identities=23% Similarity=0.261 Sum_probs=59.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEcCccCCC----chhhHHHHHHHHHcCCCCCCcccccCCCC--hHHH----HHHHH
Q 015981 189 GGSNIEERKRCAQEVAVRNVSGYWIGGFGLGE----SMEERPSLLNAVTDNLPKDWPRMICGLGL--PEEV----LQGVA 258 (397)
Q Consensus 189 Gg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~--P~~i----l~~v~ 258 (397)
|..|.+.-++-++.+.+.|++|+.+.|.. || +.+|+.++++.+.+......|. +.|+|. ..+. -.+.+
T Consensus 16 g~iD~~~l~~lv~~~~~~Gv~gi~v~Gst-GE~~~Ls~~Er~~l~~~~~~~~~g~~pv-i~gv~~~~t~~ai~~a~~A~~ 93 (294)
T TIGR02313 16 GDIDEEALRELIEFQIEGGSHAISVGGTS-GEPGSLTLEERKQAIENAIDQIAGRIPF-APGTGALNHDETLELTKFAEE 93 (294)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccC-cccccCCHHHHHHHHHHHHHHhCCCCcE-EEECCcchHHHHHHHHHHHHH
Confidence 67788888888888888999999999854 54 5588899999888877654444 567773 3333 33456
Q ss_pred cCCcEEecchhH
Q 015981 259 AGVDLFDSAYIY 270 (397)
Q Consensus 259 ~GvD~FD~~~p~ 270 (397)
.|+|-+=..-|+
T Consensus 94 ~Gad~v~v~pP~ 105 (294)
T TIGR02313 94 AGADAAMVIVPY 105 (294)
T ss_pred cCCCEEEEcCcc
Confidence 899988887664
No 52
>TIGR00674 dapA dihydrodipicolinate synthase. Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.
Probab=88.10 E-value=2.5 Score=40.95 Aligned_cols=81 Identities=23% Similarity=0.262 Sum_probs=59.8
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEcCccCCC----chhhHHHHHHHHHcCCCCCCcccccCCCC--hHHHHHH----H
Q 015981 188 VGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGE----SMEERPSLLNAVTDNLPKDWPRMICGLGL--PEEVLQG----V 257 (397)
Q Consensus 188 qGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~--P~~il~~----v 257 (397)
.|..|.+.-++.++.+.+.|++|+.+.|. .|| +.+|+.++++.+.+......| .+.|++. ..+.+.. .
T Consensus 13 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~Gs-tGE~~~Ls~~Er~~~~~~~~~~~~~~~~-vi~gv~~~s~~~~i~~a~~a~ 90 (285)
T TIGR00674 13 DGSVDFAALEKLIDFQIENGTDAIVVVGT-TGESPTLSHEEHKKVIEFVVDLVNGRVP-VIAGTGSNATEEAISLTKFAE 90 (285)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcc-CcccccCCHHHHHHHHHHHHHHhCCCCe-EEEeCCCccHHHHHHHHHHHH
Confidence 47788888888888888999999999874 354 557889999888887754444 4678874 5554443 4
Q ss_pred HcCCcEEecchhH
Q 015981 258 AAGVDLFDSAYIY 270 (397)
Q Consensus 258 ~~GvD~FD~~~p~ 270 (397)
+.|+|-+=..-|.
T Consensus 91 ~~Gad~v~v~pP~ 103 (285)
T TIGR00674 91 DVGADGFLVVTPY 103 (285)
T ss_pred HcCCCEEEEcCCc
Confidence 5899988777665
No 53
>PLN02826 dihydroorotate dehydrogenase
Probab=88.02 E-value=25 Score=36.16 Aligned_cols=139 Identities=12% Similarity=0.193 Sum_probs=79.1
Q ss_pred ChhhHHHHHHhcC--CcEEEEcCCCCCCCCCH-----HHHHHHHHHHHHHHHHHHHhCC-CCCCeEEeecCCCCHHHHHH
Q 015981 127 KPVEYMEMITSMK--PNLWATLADEVPAWANN-----KRNKTSVDRTVKWLDECIARSP-AGGAVFGSIVGGSNIEERKR 198 (397)
Q Consensus 127 tpe~~~~~q~~i~--pDi~~~L~d~~~~~~~~-----kr~~~sverT~~w~~~~l~~~~-~~~~lf~~iqGg~~~~lR~~ 198 (397)
.+++|.+..+.+. +|.+.. .-.+|..++. +..-..+=+.+++..+.+.... ...+++.=+-.-...+--..
T Consensus 202 ~~~Dy~~~~~~~~~~aDylel-NiScPNtpglr~lq~~~~l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ 280 (409)
T PLN02826 202 AAADYVQGVRALSQYADYLVI-NVSSPNTPGLRKLQGRKQLKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLED 280 (409)
T ss_pred cHHHHHHHHHHHhhhCCEEEE-ECCCCCCCCcccccChHHHHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHH
Confidence 5789999999998 776543 3445443221 1222223233344433332111 12345555544344333334
Q ss_pred HHHHHHhcCCceEEEcC--------------------ccCCCch-hhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHH
Q 015981 199 CAQEVAVRNVSGYWIGG--------------------FGLGESM-EERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQG 256 (397)
Q Consensus 199 sa~~l~~~~~~G~~IgG--------------------l~~ge~~-~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~ 256 (397)
.++.+.+.+++|+++.. ++ |... +.-.++|..+...++.+.|.+-. |+.+..|++..
T Consensus 281 ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlS-G~pl~~~sl~~v~~l~~~~~~~ipIIgvGGI~sg~Da~e~ 359 (409)
T PLN02826 281 IAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLS-GKPLFDLSTEVLREMYRLTRGKIPLVGCGGVSSGEDAYKK 359 (409)
T ss_pred HHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcC-CccccHHHHHHHHHHHHHhCCCCcEEEECCCCCHHHHHHH
Confidence 45556677888886643 21 1111 12255667777777766776644 88899999999
Q ss_pred HHcCCcEEecc
Q 015981 257 VAAGVDLFDSA 267 (397)
Q Consensus 257 v~~GvD~FD~~ 267 (397)
+.+|.|.+-.-
T Consensus 360 i~AGAs~VQv~ 370 (409)
T PLN02826 360 IRAGASLVQLY 370 (409)
T ss_pred HHhCCCeeeec
Confidence 99999988754
No 54
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=87.92 E-value=13 Score=35.69 Aligned_cols=42 Identities=24% Similarity=0.329 Sum_probs=30.5
Q ss_pred hHHHHHHHHHcCCCCCCcccc-cCCCChHHHHHHHHcCCcEEecc
Q 015981 224 ERPSLLNAVTDNLPKDWPRMI-CGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 224 ~~~~~v~~~~~~Lp~~kpr~l-~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
+..+.++.+.+.. +.|..+ +|+.+|+++-.+.+.|+|.+-.-
T Consensus 185 ~~~~~i~~lr~~~--~~pi~vgfGI~~~e~~~~~~~~GADgvVvG 227 (256)
T TIGR00262 185 ALNELVKRLKAYS--AKPVLVGFGISKPEQVKQAIDAGADGVIVG 227 (256)
T ss_pred hHHHHHHHHHhhc--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 3556666666654 357655 57778999999999999976554
No 55
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=87.76 E-value=2.7 Score=40.48 Aligned_cols=82 Identities=18% Similarity=0.132 Sum_probs=63.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHHHcCCcEE
Q 015981 189 GGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGVAAGVDLF 264 (397)
Q Consensus 189 Gg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v~~GvD~F 264 (397)
.+.+.+...+.++.+.+.+++.+.|.--...-.+++..++++.+.+.+|++.|. |.+ -.| .....+.+++.|+|.|
T Consensus 133 ~~~~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~v 212 (266)
T cd07944 133 SGYSDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEII 212 (266)
T ss_pred cCCCHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEE
Confidence 346777788888899889999988876554567788899999999998876775 443 233 4778889999999999
Q ss_pred ecchhH
Q 015981 265 DSAYIY 270 (397)
Q Consensus 265 D~~~p~ 270 (397)
|++..-
T Consensus 213 d~s~~G 218 (266)
T cd07944 213 DATVYG 218 (266)
T ss_pred EEeccc
Confidence 999643
No 56
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.
Probab=87.62 E-value=5.5 Score=40.15 Aligned_cols=80 Identities=13% Similarity=0.102 Sum_probs=59.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHHHcCCcEE
Q 015981 189 GGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGVAAGVDLF 264 (397)
Q Consensus 189 Gg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v~~GvD~F 264 (397)
+-.+.+.-.+.++.+.+.+++.+.+.-......+++..++++.+.+.+| .|. |.+ -.| .....+.|+..|+|.+
T Consensus 136 ~r~~~~~l~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~--~~l~~H~Hnd~GlA~AN~laA~~aGa~~v 213 (363)
T TIGR02090 136 TRTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK--LPISVHCHNDFGLATANSIAGVKAGAEQV 213 (363)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC--ceEEEEecCCCChHHHHHHHHHHCCCCEE
Confidence 3356777888888888899998887765545677888999998888876 443 443 223 3578899999999999
Q ss_pred ecchhH
Q 015981 265 DSAYIY 270 (397)
Q Consensus 265 D~~~p~ 270 (397)
|++.--
T Consensus 214 d~s~~G 219 (363)
T TIGR02090 214 HVTVNG 219 (363)
T ss_pred EEEeec
Confidence 999643
No 57
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=86.75 E-value=7.5 Score=35.85 Aligned_cols=119 Identities=12% Similarity=0.026 Sum_probs=71.2
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHhc
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVR 206 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~~ 206 (397)
.+...++.....|+|.+.......+ .+.. .+|++++.... -..+.-+.+ ..+ ++++.+.
T Consensus 82 ~~~~~v~~~~~~Gad~v~l~~~~~~----~~~~-------~~~~~~~~~~g---~~~~v~v~~--~~e-----~~~~~~~ 140 (217)
T cd00331 82 IDPYQIYEARAAGADAVLLIVAALD----DEQL-------KELYELARELG---MEVLVEVHD--EEE-----LERALAL 140 (217)
T ss_pred cCHHHHHHHHHcCCCEEEEeeccCC----HHHH-------HHHHHHHHHcC---CeEEEEECC--HHH-----HHHHHHc
Confidence 3445788888999999976433222 1222 23333332211 113334442 222 3445567
Q ss_pred CCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCccc-ccCCCChHHHHHHHHcCCcEEecc
Q 015981 207 NVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRM-ICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 207 ~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~-l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
+++.+.+++......... .+.+..+.+.+|.+.|.+ ..|+.+|.++..+..+|+|.+-..
T Consensus 141 g~~~i~~t~~~~~~~~~~-~~~~~~l~~~~~~~~pvia~gGI~s~edi~~~~~~Ga~gvivG 201 (217)
T cd00331 141 GAKIIGINNRDLKTFEVD-LNTTERLAPLIPKDVILVSESGISTPEDVKRLAEAGADAVLIG 201 (217)
T ss_pred CCCEEEEeCCCccccCcC-HHHHHHHHHhCCCCCEEEEEcCCCCHHHHHHHHHcCCCEEEEC
Confidence 888887775442211111 255667777777778877 569999999999999999977654
No 58
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=86.71 E-value=3.3 Score=39.80 Aligned_cols=81 Identities=26% Similarity=0.384 Sum_probs=58.8
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEcCccCCC----chhhHHHHHHHHHcCCCCCCcccccCCCC--hHHHH----HHH
Q 015981 188 VGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGE----SMEERPSLLNAVTDNLPKDWPRMICGLGL--PEEVL----QGV 257 (397)
Q Consensus 188 qGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~--P~~il----~~v 257 (397)
.|..|.+.-++-++.+.+.|++|+.+.|.. || +.+|+.++++.+.+......| .+.|+|. ..+.+ .+.
T Consensus 12 dg~iD~~~~~~~i~~l~~~Gv~gi~~~Gst-GE~~~ls~~Er~~l~~~~~~~~~~~~~-vi~gv~~~~~~~~i~~a~~a~ 89 (281)
T cd00408 12 DGEVDLDALRRLVEFLIEAGVDGLVVLGTT-GEAPTLTDEERKEVIEAVVEAVAGRVP-VIAGVGANSTREAIELARHAE 89 (281)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCC-cccccCCHHHHHHHHHHHHHHhCCCCe-EEEecCCccHHHHHHHHHHHH
Confidence 366788877888888888999999998853 54 558889999998888764444 4567775 33333 345
Q ss_pred HcCCcEEecchhH
Q 015981 258 AAGVDLFDSAYIY 270 (397)
Q Consensus 258 ~~GvD~FD~~~p~ 270 (397)
+.|+|-+=..-|.
T Consensus 90 ~~Gad~v~v~pP~ 102 (281)
T cd00408 90 EAGADGVLVVPPY 102 (281)
T ss_pred HcCCCEEEECCCc
Confidence 6899977776664
No 59
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=86.63 E-value=3.2 Score=40.50 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=57.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEcCccCCC----chhhHHHHHHHHHcCCCCCCcccccCCCC-hHHHH----HHHHc
Q 015981 189 GGSNIEERKRCAQEVAVRNVSGYWIGGFGLGE----SMEERPSLLNAVTDNLPKDWPRMICGLGL-PEEVL----QGVAA 259 (397)
Q Consensus 189 Gg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~-P~~il----~~v~~ 259 (397)
|..|.+--++-++.+.+.|++|+.+.|.. || +.+|+.++++.+.+......|. +.|+|. ..+-+ .+.+.
T Consensus 21 g~iD~~~l~~li~~l~~~Gv~gi~v~Gst-GE~~~Lt~eEr~~v~~~~~~~~~g~~pv-i~gv~~~t~~ai~~a~~a~~~ 98 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLGYGLEALFAAGGT-GEFFSLTPAEYEQVVEIAVSTAKGKVPV-YTGVGGNTSDAIEIARLAEKA 98 (296)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEECCCC-cCcccCCHHHHHHHHHHHHHHhCCCCcE-EEecCccHHHHHHHHHHHHHh
Confidence 77788877788888889999999998854 54 5588999999888887665564 567764 22222 23458
Q ss_pred CCcEEecchhH
Q 015981 260 GVDLFDSAYIY 270 (397)
Q Consensus 260 GvD~FD~~~p~ 270 (397)
|+|-+=..-|+
T Consensus 99 Gadav~~~pP~ 109 (296)
T TIGR03249 99 GADGYLLLPPY 109 (296)
T ss_pred CCCEEEECCCC
Confidence 99977655443
No 60
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=86.31 E-value=3.4 Score=40.21 Aligned_cols=81 Identities=21% Similarity=0.353 Sum_probs=58.5
Q ss_pred cCCCCHHHHHHHHHHHHhcC-CceEEEcCccCCC----chhhHHHHHHHHHcCCCCCCcccccCCC--ChHHHHH----H
Q 015981 188 VGGSNIEERKRCAQEVAVRN-VSGYWIGGFGLGE----SMEERPSLLNAVTDNLPKDWPRMICGLG--LPEEVLQ----G 256 (397)
Q Consensus 188 qGg~~~~lR~~sa~~l~~~~-~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g--~P~~il~----~ 256 (397)
.|..|.+--++-++.+.+.| ++|+.+.|.. || +.+|+.++++.+.+......| .+.|+| +..+.+. +
T Consensus 15 dg~iD~~~~~~~i~~~i~~G~v~gi~~~Gst-GE~~~Lt~eEr~~~~~~~~~~~~~~~p-vi~gv~~~~t~~~i~la~~a 92 (290)
T TIGR00683 15 DGTINEKGLRQIIRHNIDKMKVDGLYVGGST-GENFMLSTEEKKEIFRIAKDEAKDQIA-LIAQVGSVNLKEAVELGKYA 92 (290)
T ss_pred CCCcCHHHHHHHHHHHHhCCCcCEEEECCcc-cccccCCHHHHHHHHHHHHHHhCCCCc-EEEecCCCCHHHHHHHHHHH
Confidence 36678777777888888888 9999998843 54 558889999988888765445 456776 4444444 3
Q ss_pred HHcCCcEEecchhH
Q 015981 257 VAAGVDLFDSAYIY 270 (397)
Q Consensus 257 v~~GvD~FD~~~p~ 270 (397)
.+.|+|-+=..-|.
T Consensus 93 ~~~Gad~v~v~~P~ 106 (290)
T TIGR00683 93 TELGYDCLSAVTPF 106 (290)
T ss_pred HHhCCCEEEEeCCc
Confidence 57899988776564
No 61
>TIGR02660 nifV_homocitr homocitrate synthase NifV. This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.
Probab=86.05 E-value=7.1 Score=39.33 Aligned_cols=86 Identities=14% Similarity=0.048 Sum_probs=62.0
Q ss_pred eEEeecCC-CCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHH
Q 015981 183 VFGSIVGG-SNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGV 257 (397)
Q Consensus 183 lf~~iqGg-~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v 257 (397)
.|+.--++ .+.+.-.+.++.+.+.+++.+.|.-....-.+++..++++.+.+.++ .|. |.+ -.| .....+.|+
T Consensus 130 ~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~--v~l~~H~HNd~GlA~ANalaA~ 207 (365)
T TIGR02660 130 SVGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVD--LPLEMHAHNDLGMATANTLAAV 207 (365)
T ss_pred EEeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcC--CeEEEEecCCCChHHHHHHHHH
Confidence 45544444 56777788888888889988887665545677888999998888764 343 443 222 367888999
Q ss_pred HcCCcEEecchhH
Q 015981 258 AAGVDLFDSAYIY 270 (397)
Q Consensus 258 ~~GvD~FD~~~p~ 270 (397)
..|+|.+|++.--
T Consensus 208 ~aGa~~vd~tl~G 220 (365)
T TIGR02660 208 RAGATHVNTTVNG 220 (365)
T ss_pred HhCCCEEEEEeec
Confidence 9999999998643
No 62
>PRK11858 aksA trans-homoaconitate synthase; Reviewed
Probab=86.01 E-value=6.8 Score=39.70 Aligned_cols=93 Identities=12% Similarity=0.035 Sum_probs=65.0
Q ss_pred eEEeecC-CCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHH
Q 015981 183 VFGSIVG-GSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGV 257 (397)
Q Consensus 183 lf~~iqG-g~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v 257 (397)
.|....+ -.+.+.-.+.++.+.+.|++.+.|.-....-.+.+..++++.+.+.+ +.|. |.+ -.| .....+.|+
T Consensus 133 ~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~--~~~l~~H~Hnd~GlA~AN~laAv 210 (378)
T PRK11858 133 SFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV--DIPIEVHCHNDFGMATANALAGI 210 (378)
T ss_pred EEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc--CCeEEEEecCCcCHHHHHHHHHH
Confidence 3444333 36778888888888888999888876555567788899999888877 3453 444 223 366889999
Q ss_pred HcCCcEEecchhHHhhhcce
Q 015981 258 AAGVDLFDSAYIYHLTIGGF 277 (397)
Q Consensus 258 ~~GvD~FD~~~p~~~a~~G~ 277 (397)
..|+|.||++.--.--+.|.
T Consensus 211 ~aGa~~vd~tv~GlGeraGN 230 (378)
T PRK11858 211 EAGAKQVHTTVNGLGERAGN 230 (378)
T ss_pred HcCCCEEEEeeccccccccC
Confidence 99999999996433333343
No 63
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=85.92 E-value=1.9 Score=41.71 Aligned_cols=79 Identities=29% Similarity=0.320 Sum_probs=56.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEcCccCCC----chhhHHHHHHHHHcCCCCCCcccccCCCC--hHHH----HHHHH
Q 015981 189 GGSNIEERKRCAQEVAVRNVSGYWIGGFGLGE----SMEERPSLLNAVTDNLPKDWPRMICGLGL--PEEV----LQGVA 258 (397)
Q Consensus 189 Gg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~--P~~i----l~~v~ 258 (397)
|..+.+.-++-++.+.+.|++|+.+.|.. || +.+|+.++++.+.+..+...|. +.|+|. ..+. -.+.+
T Consensus 17 g~id~~~~~~~i~~l~~~Gv~gl~~~Gst-GE~~~Lt~~Er~~l~~~~~~~~~~~~~v-i~gv~~~st~~~i~~a~~a~~ 94 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEAGVDGLVVLGST-GEFYSLTDEERKELLEIVVEAAAGRVPV-IAGVGANSTEEAIELARHAQD 94 (289)
T ss_dssp SSB-HHHHHHHHHHHHHTTSSEEEESSTT-TTGGGS-HHHHHHHHHHHHHHHTTSSEE-EEEEESSSHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECCCC-cccccCCHHHHHHHHHHHHHHccCceEE-EecCcchhHHHHHHHHHHHhh
Confidence 66788888888888889999999999854 55 4578899999988888765564 557764 4443 34457
Q ss_pred cCCcEEecchh
Q 015981 259 AGVDLFDSAYI 269 (397)
Q Consensus 259 ~GvD~FD~~~p 269 (397)
+|+|-+-..-|
T Consensus 95 ~Gad~v~v~~P 105 (289)
T PF00701_consen 95 AGADAVLVIPP 105 (289)
T ss_dssp TT-SEEEEEES
T ss_pred cCceEEEEecc
Confidence 99997765545
No 64
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=85.90 E-value=6 Score=39.22 Aligned_cols=94 Identities=13% Similarity=0.161 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEc-CccC----------CCchhhHHHHHHHH
Q 015981 164 DRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIG-GFGL----------GESMEERPSLLNAV 232 (397)
Q Consensus 164 erT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~Ig-Gl~~----------ge~~~~~~~~v~~~ 232 (397)
-.+++|+++.. ...-+|-|+.. -.+.++.+.+.|++|+.+| |-+. |-..-+ ...|..+
T Consensus 125 ~~~i~~i~~~~-------p~~~vi~GnV~---t~e~a~~l~~aGad~I~V~~G~G~~~~tr~~~g~g~~~~~-l~ai~ev 193 (321)
T TIGR01306 125 INMIKHIKTHL-------PDSFVIAGNVG---TPEAVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQ-LAALRWC 193 (321)
T ss_pred HHHHHHHHHhC-------CCCEEEEecCC---CHHHHHHHHHcCcCEEEECCCCCccccceeeeccCCCchH-HHHHHHH
Confidence 33566766532 12234444332 3456777888999999887 2211 111011 2345555
Q ss_pred HcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecchhH
Q 015981 233 TDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAYIY 270 (397)
Q Consensus 233 ~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~p~ 270 (397)
.+.. +.|.+.- |+-+..||..|+++|.|..=...+.
T Consensus 194 ~~a~--~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ 230 (321)
T TIGR01306 194 AKAA--RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLF 230 (321)
T ss_pred HHhc--CCeEEEECCcCcHHHHHHHHHcCCCEEeechhh
Confidence 5543 4676554 8889999999999999977666443
No 65
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=85.66 E-value=9.4 Score=37.27 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCceEEEcCccCCCch---hhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecchhHHh
Q 015981 198 RCAQEVAVRNVSGYWIGGFGLGESM---EERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAYIYHL 272 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~ge~~---~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~p~~~ 272 (397)
+-++.+.+.|++++.+.|-+ |... ....+.+..+.+.++.+.|.+.. |+.++.+++.++++|+|.+=..-|...
T Consensus 184 ~~a~~a~~~G~d~I~v~~~g-G~~~~~g~~~~~~l~~i~~~~~~~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~ 261 (299)
T cd02809 184 EDALRAVDAGADGIVVSNHG-GRQLDGAPATIDALPEIVAAVGGRIEVLLDGGIRRGTDVLKALALGADAVLIGRPFLY 261 (299)
T ss_pred HHHHHHHHCCCCEEEEcCCC-CCCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 33667778899999997643 2211 12345666666666656777665 889999999999999998887766543
No 66
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=85.53 E-value=5.4 Score=38.13 Aligned_cols=127 Identities=12% Similarity=0.049 Sum_probs=80.7
Q ss_pred hHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEee-cCCCCHHHHHHHHHHHHhcCC
Q 015981 130 EYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSI-VGGSNIEERKRCAQEVAVRNV 208 (397)
Q Consensus 130 ~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~i-qGg~~~~lR~~sa~~l~~~~~ 208 (397)
+.++.....+.|++-.. .... ... .+....+++++. .....+.+. -+..+++...+.++.+.+.|+
T Consensus 89 ~~i~~a~~~g~~~iri~-~~~s---~~~----~~~~~i~~ak~~-----G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~ 155 (263)
T cd07943 89 DDLKMAADLGVDVVRVA-THCT---EAD----VSEQHIGAARKL-----GMDVVGFLMMSHMASPEELAEQAKLMESYGA 155 (263)
T ss_pred HHHHHHHHcCCCEEEEE-echh---hHH----HHHHHHHHHHHC-----CCeEEEEEEeccCCCHHHHHHHHHHHHHcCC
Confidence 44555666788976443 2111 111 233345554431 011122332 345678888888999999999
Q ss_pred ceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHHHcCCcEEecchhH
Q 015981 209 SGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGVAAGVDLFDSAYIY 270 (397)
Q Consensus 209 ~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v~~GvD~FD~~~p~ 270 (397)
+.+.|.--...-.+++..++++.+.+.+|. .|. |.+ -.| .....+.|++.|+|.||++..-
T Consensus 156 d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~-~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~G 220 (263)
T cd07943 156 DCVYVTDSAGAMLPDDVRERVRALREALDP-TPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAG 220 (263)
T ss_pred CEEEEcCCCCCcCHHHHHHHHHHHHHhCCC-ceEEEEecCCcchHHHHHHHHHHhCCCEEEeeccc
Confidence 988876544446678889999999998875 354 444 333 3678888999999999999644
No 67
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=85.31 E-value=2.4 Score=48.96 Aligned_cols=77 Identities=21% Similarity=0.149 Sum_probs=62.1
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccC---CC-ChHHHHHHHHcCCcEEec
Q 015981 191 SNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICG---LG-LPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 191 ~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G---~g-~P~~il~~v~~GvD~FD~ 266 (397)
++.+.-.+.++++.+.|++-+.|.-....-.+.+..++|+++.+.+ +.|.+++. .| .....+.|++.|+|.+|+
T Consensus 686 ~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~--~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ 763 (1143)
T TIGR01235 686 YDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT--DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDV 763 (1143)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc--CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEe
Confidence 3567778889999999999999877665567788899999998887 57876542 33 477899999999999999
Q ss_pred chh
Q 015981 267 AYI 269 (397)
Q Consensus 267 ~~p 269 (397)
+..
T Consensus 764 ai~ 766 (1143)
T TIGR01235 764 AVD 766 (1143)
T ss_pred cch
Confidence 964
No 68
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=84.98 E-value=4.6 Score=39.53 Aligned_cols=80 Identities=19% Similarity=0.221 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEcCccCCC----chhhHHHHHHHHHcCCCCCCcccccCCCC-hHHHHH----HHHc
Q 015981 189 GGSNIEERKRCAQEVAVRNVSGYWIGGFGLGE----SMEERPSLLNAVTDNLPKDWPRMICGLGL-PEEVLQ----GVAA 259 (397)
Q Consensus 189 Gg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~-P~~il~----~v~~ 259 (397)
|..|.+.-++-++.+.+.|++|+.+.|.. || +.+|+.++++.+.+......|. +.|+|. ..+.+. +-+.
T Consensus 23 g~iD~~~l~~li~~l~~~Gv~Gi~~~Gst-GE~~~Lt~eEr~~~~~~~~~~~~~~~pv-i~gv~~~t~~~i~~~~~a~~~ 100 (303)
T PRK03620 23 GSFDEAAYREHLEWLAPYGAAALFAAGGT-GEFFSLTPDEYSQVVRAAVETTAGRVPV-IAGAGGGTAQAIEYAQAAERA 100 (303)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCC-cCcccCCHHHHHHHHHHHHHHhCCCCcE-EEecCCCHHHHHHHHHHHHHh
Confidence 66787777788888888999999998853 44 5688999999998888766665 446663 333333 3467
Q ss_pred CCcEEecchhH
Q 015981 260 GVDLFDSAYIY 270 (397)
Q Consensus 260 GvD~FD~~~p~ 270 (397)
|+|-+-..-|+
T Consensus 101 Gadav~~~pP~ 111 (303)
T PRK03620 101 GADGILLLPPY 111 (303)
T ss_pred CCCEEEECCCC
Confidence 99976655443
No 69
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=83.97 E-value=15 Score=35.22 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHcCCCCCCcccc-cCCCChHHHHHHHHcCCcEEec
Q 015981 223 EERPSLLNAVTDNLPKDWPRMI-CGLGLPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 223 ~~~~~~v~~~~~~Lp~~kpr~l-~G~g~P~~il~~v~~GvD~FD~ 266 (397)
.+..+.++.+.+.. ++|..+ +|+.+|+++-... .|+|-+-.
T Consensus 184 ~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~-~~aDGvIV 225 (259)
T PF00290_consen 184 DELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA-AGADGVIV 225 (259)
T ss_dssp HHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH-TTSSEEEE
T ss_pred HHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH-ccCCEEEE
Confidence 34566777776665 789876 8999999999988 99996553
No 70
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=83.71 E-value=18 Score=35.99 Aligned_cols=134 Identities=10% Similarity=0.018 Sum_probs=83.5
Q ss_pred hHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCC-eEEee--cCCCCHHHHHHHHHHHHhc
Q 015981 130 EYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGA-VFGSI--VGGSNIEERKRCAQEVAVR 206 (397)
Q Consensus 130 ~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~-lf~~i--qGg~~~~lR~~sa~~l~~~ 206 (397)
+-++.....|.|++-...- + +. .. .+++..+|+++. +. +++.+ -....++.-.+-++.+.+.
T Consensus 91 ~dl~~a~~~gvd~iri~~~-~----~e--~d-~~~~~i~~ak~~-------G~~v~~~l~~s~~~~~e~l~~~a~~~~~~ 155 (333)
T TIGR03217 91 HDLKAAYDAGARTVRVATH-C----TE--AD-VSEQHIGMAREL-------GMDTVGFLMMSHMTPPEKLAEQAKLMESY 155 (333)
T ss_pred HHHHHHHHCCCCEEEEEec-c----ch--HH-HHHHHHHHHHHc-------CCeEEEEEEcccCCCHHHHHHHHHHHHhc
Confidence 3456666678887744321 1 11 11 234555555431 21 22222 2335667777778888888
Q ss_pred CCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHHHcCCcEEecchhHHhhhccee
Q 015981 207 NVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGVAAGVDLFDSAYIYHLTIGGFA 278 (397)
Q Consensus 207 ~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v~~GvD~FD~~~p~~~a~~G~a 278 (397)
+.+.+.|---...-.+++..+++..+.+.++++.|. |.+ ..| .....+.+++.|+|.+|++..-.-.+.|.+
T Consensus 156 Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~~aGN~ 231 (333)
T TIGR03217 156 GADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGAGAGNA 231 (333)
T ss_pred CCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeecccccccccCc
Confidence 888877754444456778899999999999866775 333 233 367888999999999999975544444443
No 71
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=83.37 E-value=33 Score=33.15 Aligned_cols=41 Identities=17% Similarity=0.240 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecch
Q 015981 226 PSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~ 268 (397)
.+.+..+.+.+ +.|.... |+.+|.++..++..|+|.+-..-
T Consensus 220 ~~~i~~i~~~~--~ipii~~GGI~~~~da~~~l~~GAd~V~igr 261 (296)
T cd04740 220 LRMVYQVYKAV--EIPIIGVGGIASGEDALEFLMAGASAVQVGT 261 (296)
T ss_pred HHHHHHHHHhc--CCCEEEECCCCCHHHHHHHHHcCCCEEEEch
Confidence 45566666555 4665544 77799999999999998876553
No 72
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=83.22 E-value=34 Score=33.29 Aligned_cols=135 Identities=10% Similarity=-0.027 Sum_probs=78.8
Q ss_pred hhhHHHHHHhc------CCcEEEEcCCCCCCCCCHHHH---HHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHH
Q 015981 128 PVEYMEMITSM------KPNLWATLADEVPAWANNKRN---KTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKR 198 (397)
Q Consensus 128 pe~~~~~q~~i------~pDi~~~L~d~~~~~~~~kr~---~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~ 198 (397)
+++|.+..+.+ ++|.+.. .-.||........ ...+.+-++++++.. +-+++.=+-.+.+.+.-.+
T Consensus 102 ~~~~~~~~~~~~~~~~~~ad~iel-N~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~-----~iPv~vKl~p~~~~~~~~~ 175 (294)
T cd04741 102 AEDIAAMYKKIAAHQKQFPLAMEL-NLSCPNVPGKPPPAYDFDATLEYLTAVKAAY-----SIPVGVKTPPYTDPAQFDT 175 (294)
T ss_pred HHHHHHHHHHHHhhccccccEEEE-ECCCCCCCCcccccCCHHHHHHHHHHHHHhc-----CCCEEEEeCCCCCHHHHHH
Confidence 68888866655 4676643 2355543222111 223444444444432 1346666666666555566
Q ss_pred HHHHHHhc--CCceEEE-----cCccC----------------CCc----hhhHHHHHHHHHcCCCCCCccccc-CCCCh
Q 015981 199 CAQEVAVR--NVSGYWI-----GGFGL----------------GES----MEERPSLLNAVTDNLPKDWPRMIC-GLGLP 250 (397)
Q Consensus 199 sa~~l~~~--~~~G~~I-----gGl~~----------------ge~----~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P 250 (397)
.++.+.+. +++|+.+ .|+.. |-+ ...-.+.|..+.+.++.+.|..-. |+.++
T Consensus 176 ~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~~~ipIig~GGI~s~ 255 (294)
T cd04741 176 LAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLPSEIQIIGVGGVLDG 255 (294)
T ss_pred HHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcCCCCCEEEeCCCCCH
Confidence 67766666 7888874 11100 111 111245566666777766786644 68899
Q ss_pred HHHHHHHHcCCcEEecch
Q 015981 251 EEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 251 ~~il~~v~~GvD~FD~~~ 268 (397)
.|+++.+..|+|.+-..-
T Consensus 256 ~da~e~l~aGA~~Vqv~t 273 (294)
T cd04741 256 RGAFRMRLAGASAVQVGT 273 (294)
T ss_pred HHHHHHHHcCCCceeEch
Confidence 999999999999887653
No 73
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=82.81 E-value=6.8 Score=38.04 Aligned_cols=80 Identities=16% Similarity=0.202 Sum_probs=57.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEcCccCCC----chhhHHHHHHHHHcCCCCCCcccccCCC-ChHHHHH----HHHc
Q 015981 189 GGSNIEERKRCAQEVAVRNVSGYWIGGFGLGE----SMEERPSLLNAVTDNLPKDWPRMICGLG-LPEEVLQ----GVAA 259 (397)
Q Consensus 189 Gg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g-~P~~il~----~v~~ 259 (397)
|..|.+.-++-++.+.+.|++|+.+.|- .|| +.+|+.++++.+.+......|.+ .|++ +..+.+. +.+.
T Consensus 16 g~iD~~~l~~l~~~l~~~Gv~gi~v~Gs-tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi-~gv~~~t~~~i~~a~~a~~~ 93 (289)
T cd00951 16 GSFDEDAYRAHVEWLLSYGAAALFAAGG-TGEFFSLTPDEYAQVVRAAVEETAGRVPVL-AGAGYGTATAIAYAQAAEKA 93 (289)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcC-CcCcccCCHHHHHHHHHHHHHHhCCCCCEE-EecCCCHHHHHHHHHHHHHh
Confidence 6677777777788888899999999884 354 55788999999888887666654 4555 4444333 3568
Q ss_pred CCcEEecchhH
Q 015981 260 GVDLFDSAYIY 270 (397)
Q Consensus 260 GvD~FD~~~p~ 270 (397)
|+|-+-..-|+
T Consensus 94 Gad~v~~~pP~ 104 (289)
T cd00951 94 GADGILLLPPY 104 (289)
T ss_pred CCCEEEECCCC
Confidence 99987666453
No 74
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea. This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=82.80 E-value=5.4 Score=38.55 Aligned_cols=77 Identities=23% Similarity=0.311 Sum_probs=54.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEcCccCCC----chhhHHHHHHHHHcCCCCCCcccccCCCC--hHHHHH----HHH
Q 015981 189 GGSNIEERKRCAQEVAVRNVSGYWIGGFGLGE----SMEERPSLLNAVTDNLPKDWPRMICGLGL--PEEVLQ----GVA 258 (397)
Q Consensus 189 Gg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~--P~~il~----~v~ 258 (397)
|..|.+.-++-++.+.+.|++|+.+.|.. || +.+|+.++++.+.+.. ++ .+.|+|+ +.+.+. +.+
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~Gst-GE~~~Lt~eEr~~l~~~~~~~~--~~--vi~gvg~~~~~~ai~~a~~a~~ 89 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVAGTT-GLGPSLSFQEKLELLKAYSDIT--DK--VIFQVGSLNLEESIELARAAKS 89 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcccC-CCcccCCHHHHHHHHHHHHHHc--CC--EEEEeCcCCHHHHHHHHHHHHH
Confidence 66777777777888888999999998853 54 5578888888887765 22 5678873 444433 456
Q ss_pred cCCcEEecchhH
Q 015981 259 AGVDLFDSAYIY 270 (397)
Q Consensus 259 ~GvD~FD~~~p~ 270 (397)
.|+|-+=..-|.
T Consensus 90 ~Gad~v~v~~P~ 101 (279)
T cd00953 90 FGIYAIASLPPY 101 (279)
T ss_pred cCCCEEEEeCCc
Confidence 999977765443
No 75
>PLN02535 glycolate oxidase
Probab=82.77 E-value=5.2 Score=40.39 Aligned_cols=74 Identities=18% Similarity=0.158 Sum_probs=50.7
Q ss_pred HHHHHHHhcCCceEEEcCccCC---CchhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecchhHHh
Q 015981 198 RCAQEVAVRNVSGYWIGGFGLG---ESMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAYIYHL 272 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~g---e~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~p~~~ 272 (397)
+-++.+.+.|++|+.+.|-+.. ... ...+.+.++.+.+..+.|.+.. |+.++.||+.++++|.|..=..-|...
T Consensus 235 ~dA~~a~~~GvD~I~vsn~GGr~~d~~~-~t~~~L~ev~~av~~~ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~ 312 (364)
T PLN02535 235 EDAIKAVEVGVAGIIVSNHGARQLDYSP-ATISVLEEVVQAVGGRVPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIY 312 (364)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCCCCh-HHHHHHHHHHHHHhcCCCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHh
Confidence 3466777899999999875521 111 1134455555554445677665 899999999999999997776666543
No 76
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=82.64 E-value=4.4 Score=41.15 Aligned_cols=76 Identities=17% Similarity=0.237 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCceEEEcCccCCCchh---hHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecchhHH
Q 015981 196 RKRCAQEVAVRNVSGYWIGGFGLGESME---ERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAYIYH 271 (397)
Q Consensus 196 R~~sa~~l~~~~~~G~~IgGl~~ge~~~---~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~p~~ 271 (397)
..+-++.+.+.|++|+.++|-+ |-..+ ...+.+.++.+.+..+.|.++- |+-+..||+.++++|.|..=..-|..
T Consensus 255 s~~dA~~a~~~Gvd~I~Vs~hG-Gr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l 333 (381)
T PRK11197 255 DPEDARDAVRFGADGIVVSNHG-GRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLLGRAFV 333 (381)
T ss_pred CHHHHHHHHhCCCCEEEECCCC-CCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHH
Confidence 3456677788999999998855 32221 1234455555445445777765 89999999999999999887776554
Q ss_pred h
Q 015981 272 L 272 (397)
Q Consensus 272 ~ 272 (397)
.
T Consensus 334 ~ 334 (381)
T PRK11197 334 Y 334 (381)
T ss_pred H
Confidence 3
No 77
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=82.18 E-value=5.8 Score=38.89 Aligned_cols=80 Identities=26% Similarity=0.329 Sum_probs=59.1
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEcCccCCC----chhhHHHHHHHHHcCCCCCCcccccCCCCh--HH----HHHHH
Q 015981 188 VGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGE----SMEERPSLLNAVTDNLPKDWPRMICGLGLP--EE----VLQGV 257 (397)
Q Consensus 188 qGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P--~~----il~~v 257 (397)
.|..|.+--++.++.+.+.|++|+.+.|-. || +.+|+.++++.+.+..-...| .+.|+|+. .+ .-.+-
T Consensus 19 dg~vD~~a~~~lv~~li~~Gv~gi~~~Gtt-GE~~~Ls~eEr~~v~~~~v~~~~grvp-viaG~g~~~t~eai~lak~a~ 96 (299)
T COG0329 19 DGSVDEEALRRLVEFLIAAGVDGLVVLGTT-GESPTLTLEERKEVLEAVVEAVGGRVP-VIAGVGSNSTAEAIELAKHAE 96 (299)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECCCC-ccchhcCHHHHHHHHHHHHHHHCCCCc-EEEecCCCcHHHHHHHHHHHH
Confidence 377898888889999999999999998854 65 447888898888887754455 57788863 22 22334
Q ss_pred HcCCcEEecchh
Q 015981 258 AAGVDLFDSAYI 269 (397)
Q Consensus 258 ~~GvD~FD~~~p 269 (397)
+.|+|-+=.+=|
T Consensus 97 ~~Gad~il~v~P 108 (299)
T COG0329 97 KLGADGILVVPP 108 (299)
T ss_pred hcCCCEEEEeCC
Confidence 699997766644
No 78
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=82.11 E-value=3.3 Score=41.67 Aligned_cols=78 Identities=15% Similarity=0.162 Sum_probs=52.9
Q ss_pred HHHHHHHHHHhcCCceEEEcCccCCCch---hhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecchhH
Q 015981 195 ERKRCAQEVAVRNVSGYWIGGFGLGESM---EERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAYIY 270 (397)
Q Consensus 195 lR~~sa~~l~~~~~~G~~IgGl~~ge~~---~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~p~ 270 (397)
+..+-++.+.+.|++|+.++|-+. -+. ..-.+.+.++.+.++.+-|.++- |+-+..||+.++++|.|.+=..-|.
T Consensus 234 ~~~~da~~~~~~G~~~i~vs~hGG-r~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~ 312 (356)
T PF01070_consen 234 LSPEDAKRAVDAGVDGIDVSNHGG-RQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIGRPF 312 (356)
T ss_dssp -SHHHHHHHHHTT-SEEEEESGTG-TSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEESHHH
T ss_pred ccHHHHHHHHhcCCCEEEecCCCc-ccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEccHH
Confidence 455667788899999999998652 111 11244555566666667777665 8999999999999999999988776
Q ss_pred Hhh
Q 015981 271 HLT 273 (397)
Q Consensus 271 ~~a 273 (397)
..+
T Consensus 313 l~~ 315 (356)
T PF01070_consen 313 LYA 315 (356)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 79
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=81.52 E-value=6.6 Score=39.91 Aligned_cols=75 Identities=12% Similarity=0.149 Sum_probs=51.9
Q ss_pred HHHHHHHHhcCCceEEEcCccCCC--chhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecchhHH
Q 015981 197 KRCAQEVAVRNVSGYWIGGFGLGE--SMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAYIYH 271 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~IgGl~~ge--~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~p~~ 271 (397)
.+-++.+.+.|++|+.++|-+... ...-...+|.++.+.+..+.|.++- |+.+..||+.++++|.|..=..-|..
T Consensus 264 ~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 264 PDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred HHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 345667778999999998754211 1111234555565556656777765 89999999999999999877765554
No 80
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=81.34 E-value=8 Score=32.40 Aligned_cols=66 Identities=15% Similarity=0.109 Sum_probs=43.1
Q ss_pred HHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEE
Q 015981 198 RCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLF 264 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~F 264 (397)
+.++.+.+.+.+-++|.+.. +...+...++++...+..|.+-+.++=|...+.++..+.++|+|-|
T Consensus 41 ~~~~~a~~~~~d~V~iS~~~-~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~d~~ 106 (122)
T cd02071 41 EIVEAAIQEDVDVIGLSSLS-GGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGVAEI 106 (122)
T ss_pred HHHHHHHHcCCCEEEEcccc-hhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCCCEE
Confidence 34455556788888887653 3444455667776666655533334446667778888999998855
No 81
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=80.79 E-value=7.5 Score=39.27 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCceEEEcCccCCCchh---hHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecchhHHh
Q 015981 197 KRCAQEVAVRNVSGYWIGGFGLGESME---ERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAYIYHL 272 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~IgGl~~ge~~~---~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~p~~~ 272 (397)
.+-++.+.+.|++|+.++|-+.. ..+ --.+++.++.+.+..+.|.++- |+-+..||+.++++|.|..=..-|...
T Consensus 235 ~~dA~~a~~~Gvd~I~VsnhGGr-qld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~ 313 (367)
T PLN02493 235 GEDARIAIQAGAAGIIVSNHGAR-QLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 313 (367)
T ss_pred HHHHHHHHHcCCCEEEECCCCCC-CCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 45566777899999999987632 211 1234555555555445676654 999999999999999998877766553
No 82
>PLN02979 glycolate oxidase
Probab=80.45 E-value=7.9 Score=39.01 Aligned_cols=75 Identities=15% Similarity=0.144 Sum_probs=52.0
Q ss_pred HHHHHHHHhcCCceEEEcCccCCCchh---hHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecchhHHh
Q 015981 197 KRCAQEVAVRNVSGYWIGGFGLGESME---ERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAYIYHL 272 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~IgGl~~ge~~~---~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~p~~~ 272 (397)
.+-++.+.+.|++|+.++|-+.. ..+ --..++.++.+.+....|.++- |+-+..||+.++++|.|..=..-|...
T Consensus 234 ~~dA~~a~~~Gvd~I~VsnhGGr-qld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~ 312 (366)
T PLN02979 234 GEDARIAIQAGAAGIIVSNHGAR-QLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFIGRPVVF 312 (366)
T ss_pred HHHHHHHHhcCCCEEEECCCCcC-CCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHH
Confidence 45566778899999999987632 111 1134444454444445666654 899999999999999998877766553
No 83
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=79.88 E-value=35 Score=33.82 Aligned_cols=138 Identities=17% Similarity=0.136 Sum_probs=76.8
Q ss_pred ecChhhHHHHHHhcCCcEEEEcCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHH
Q 015981 125 LIKPVEYMEMITSMKPNLWATLADEV---PAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQ 201 (397)
Q Consensus 125 ~ltpe~~~~~q~~i~pDi~~~L~d~~---~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~ 201 (397)
..+++++.+.++.+++|....=-.+. ..+.+.+.. +.+-..++++.+.+ +-+++.-..|... -.+-++
T Consensus 126 ~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df-~~~~~~i~~l~~~~-----~vPVivK~~g~g~---s~~~a~ 196 (326)
T cd02811 126 GYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDF-RGWLERIEELVKAL-----SVPVIVKEVGFGI---SRETAK 196 (326)
T ss_pred CCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCH-HHHHHHHHHHHHhc-----CCCEEEEecCCCC---CHHHHH
Confidence 35899999999999999764321110 011111111 11112233332211 1233333333211 135567
Q ss_pred HHHhcCCceEEEcCccCC-----C-----ch--------h----hHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHH
Q 015981 202 EVAVRNVSGYWIGGFGLG-----E-----SM--------E----ERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVA 258 (397)
Q Consensus 202 ~l~~~~~~G~~IgGl~~g-----e-----~~--------~----~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~ 258 (397)
.+.+.|++++.++|.+.. | .. . .....+..+.+.++ +.|.... |+-++.+|..++.
T Consensus 197 ~l~~~Gvd~I~vsG~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~-~ipIiasGGIr~~~dv~kal~ 275 (326)
T cd02811 197 RLADAGVKAIDVAGAGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP-DLPLIASGGIRNGLDIAKALA 275 (326)
T ss_pred HHHHcCCCEEEECCCCCCcccccccccccccccccccccccccccHHHHHHHHHHHcC-CCcEEEECCCCCHHHHHHHHH
Confidence 788899999999885321 0 00 0 01234444444454 5676654 8889999999999
Q ss_pred cCCcEEecchhHHh
Q 015981 259 AGVDLFDSAYIYHL 272 (397)
Q Consensus 259 ~GvD~FD~~~p~~~ 272 (397)
+|+|.+=..-|...
T Consensus 276 lGAd~V~i~~~~L~ 289 (326)
T cd02811 276 LGADLVGMAGPFLK 289 (326)
T ss_pred hCCCEEEEcHHHHH
Confidence 99999888866543
No 84
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=79.58 E-value=57 Score=32.73 Aligned_cols=138 Identities=17% Similarity=0.131 Sum_probs=76.9
Q ss_pred ecChhhHHHHHHhcCCcEEEE-cCC--CCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHH
Q 015981 125 LIKPVEYMEMITSMKPNLWAT-LAD--EVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQ 201 (397)
Q Consensus 125 ~ltpe~~~~~q~~i~pDi~~~-L~d--~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~ 201 (397)
.++++++.++++.+++|.... +.- +...+.+.+. -+.+-..++|+.+.+ +-+++.=..|.... .+-++
T Consensus 134 ~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~-f~~~le~i~~i~~~~-----~vPVivK~~g~g~s---~~~a~ 204 (352)
T PRK05437 134 GYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRD-FRGWLDNIAEIVSAL-----PVPVIVKEVGFGIS---KETAK 204 (352)
T ss_pred CCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCccc-HHHHHHHHHHHHHhh-----CCCEEEEeCCCCCc---HHHHH
Confidence 468899999999999997633 211 0111111111 111112233333221 12233222332221 35667
Q ss_pred HHHhcCCceEEEcCccCCCch------h---------------hHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHc
Q 015981 202 EVAVRNVSGYWIGGFGLGESM------E---------------ERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAA 259 (397)
Q Consensus 202 ~l~~~~~~G~~IgGl~~ge~~------~---------------~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~ 259 (397)
.+.+.|++++.++|.+ |.+. . .....+..+.+.++ +.|.... |+.++.++..++.+
T Consensus 205 ~l~~~Gvd~I~Vsg~G-Gt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~~-~ipvia~GGI~~~~dv~k~l~~ 282 (352)
T PRK05437 205 RLADAGVKAIDVAGAG-GTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLLP-DLPIIASGGIRNGLDIAKALAL 282 (352)
T ss_pred HHHHcCCCEEEECCCC-CCCccchhhhhhhccccccccccccCCHHHHHHHHHHhcC-CCeEEEECCCCCHHHHHHHHHc
Confidence 7888899999999864 3110 0 01223333444332 4566554 88899999999999
Q ss_pred CCcEEecchhHHhh
Q 015981 260 GVDLFDSAYIYHLT 273 (397)
Q Consensus 260 GvD~FD~~~p~~~a 273 (397)
|+|.+=..-|...+
T Consensus 283 GAd~v~ig~~~l~~ 296 (352)
T PRK05437 283 GADAVGMAGPFLKA 296 (352)
T ss_pred CCCEEEEhHHHHHH
Confidence 99999888775443
No 85
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=79.02 E-value=34 Score=35.04 Aligned_cols=69 Identities=16% Similarity=0.181 Sum_probs=52.6
Q ss_pred HHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecch
Q 015981 197 KRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~ 268 (397)
.+-++.+.+.+++-++|..-+ |.+ +...++|+++....|. .+..+-++.++.+...++.+|+|.+...|
T Consensus 155 ~~~v~~lv~aGvDvI~iD~a~-g~~-~~~~~~v~~ik~~~p~-~~vi~g~V~T~e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 155 IERVEELVKAHVDILVIDSAH-GHS-TRIIELVKKIKTKYPN-LDLIAGNIVTKEAALDLISVGADCLKVGI 223 (404)
T ss_pred HHHHHHHHhcCCCEEEEECCC-CCC-hhHHHHHHHHHhhCCC-CcEEEEecCCHHHHHHHHHcCCCEEEECC
Confidence 344677888899999987544 433 4567888888888874 55445589999999999999999997543
No 86
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=78.90 E-value=59 Score=30.67 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=68.9
Q ss_pred ecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCC-eEEeecCCCCHHHHHHHHHHH
Q 015981 125 LIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGA-VFGSIVGGSNIEERKRCAQEV 203 (397)
Q Consensus 125 ~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~-lf~~iqGg~~~~lR~~sa~~l 203 (397)
...|++|++.....|+|.+...|-+... .+ ...++++.+.+. +. ..-.|.-....+.-+..++
T Consensus 87 ~~~~~~~i~~~~~~Gadgvii~dlp~e~---~~-------~~~~~~~~~~~~----Gl~~~~~v~p~T~~e~l~~~~~-- 150 (244)
T PRK13125 87 VDSLDNFLNMARDVGADGVLFPDLLIDY---PD-------DLEKYVEIIKNK----GLKPVFFTSPKFPDLLIHRLSK-- 150 (244)
T ss_pred hhCHHHHHHHHHHcCCCEEEECCCCCCc---HH-------HHHHHHHHHHHc----CCCEEEEECCCCCHHHHHHHHH--
Confidence 4589999999999999999886322111 11 223344444332 22 4444555554432222222
Q ss_pred HhcCCceEEEcCcc--CCCch-hhHHHHHHHHHcCCCCCCcccc-cCCCChHHHHHHHHcCCcEEecc
Q 015981 204 AVRNVSGYWIGGFG--LGESM-EERPSLLNAVTDNLPKDWPRMI-CGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 204 ~~~~~~G~~IgGl~--~ge~~-~~~~~~v~~~~~~Lp~~kpr~l-~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
..+||.+=+.. .|... ....+.++.+.+..+ ++|..+ .|+.+|.++-.+++.|+|.|-.-
T Consensus 151 ---~~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~-~~~i~v~gGI~~~e~i~~~~~~gaD~vvvG 214 (244)
T PRK13125 151 ---LSPLFIYYGLRPATGVPLPVSVERNIKRVRNLVG-NKYLVVGFGLDSPEDARDALSAGADGVVVG 214 (244)
T ss_pred ---hCCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcC-CCCEEEeCCcCCHHHHHHHHHcCCCEEEEC
Confidence 13444321221 12222 223455666666655 456544 57889999999999999987655
No 87
>COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane]
Probab=77.88 E-value=5.7 Score=39.23 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHc
Q 015981 155 NNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234 (397)
Q Consensus 155 ~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~ 234 (397)
+.-++.++.+-...|-.++.+...+.+.+|.+-- ++ ..|++.+.+++++-|=|+..... ...+|+.+..
T Consensus 77 slyel~e~~~~p~e~~~~Lke~a~~~Gi~~~SSP--fd----~~svd~l~~~~~~ayKIaS~E~~-----~~plik~iA~ 145 (347)
T COG2089 77 SLYELYEEAETPLEWHAQLKEYARKRGIIFFSSP--FD----LTAVDLLESLNPPAYKIASGEIN-----DLPLIKYIAK 145 (347)
T ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHcCeEEEecC--CC----HHHHHHHHhcCCCeEEecCcccc-----ChHHHHHHHh
Confidence 3457788888999999999887655454443322 12 46888999999999999854322 2456666554
Q ss_pred CCCCCCccccc-CCCChHHHHHHHH
Q 015981 235 NLPKDWPRMIC-GLGLPEEVLQGVA 258 (397)
Q Consensus 235 ~Lp~~kpr~l~-G~g~P~~il~~v~ 258 (397)
.+||.++. |..+..+|-.++.
T Consensus 146 ---~~kPiIlSTGma~~~ei~~av~ 167 (347)
T COG2089 146 ---KGKPIILSTGMATIEEIEEAVA 167 (347)
T ss_pred ---cCCCEEEEcccccHHHHHHHHH
Confidence 37898875 9999999988874
No 88
>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain. Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with
Probab=77.70 E-value=23 Score=34.35 Aligned_cols=87 Identities=3% Similarity=-0.098 Sum_probs=50.3
Q ss_pred eEEeecCCCCH-------HHHHHHHHHHHhcCCc-eEEEcCccC-CC------chhhHHHHHHHHHcCCC-CCCc--ccc
Q 015981 183 VFGSIVGGSNI-------EERKRCAQEVAVRNVS-GYWIGGFGL-GE------SMEERPSLLNAVTDNLP-KDWP--RMI 244 (397)
Q Consensus 183 lf~~iqGg~~~-------~lR~~sa~~l~~~~~~-G~~IgGl~~-ge------~~~~~~~~v~~~~~~Lp-~~kp--r~l 244 (397)
+-..+.|.... +.-.+.++...+.|.+ -+.+.-... .. -+++..++++.+.+.++ ++.| .|.
T Consensus 131 v~~~~ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~ 210 (279)
T cd07947 131 PRCHLEDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHG 210 (279)
T ss_pred EEEEEEcccCCCcccchHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEe
Confidence 44444666544 2333444444446776 565543221 11 12567788888877642 1233 355
Q ss_pred c-CCC-ChHHHHHHHHcCCcEEecchh
Q 015981 245 C-GLG-LPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 245 ~-G~g-~P~~il~~v~~GvD~FD~~~p 269 (397)
+ -.| .....+.|+..|+|.||++.-
T Consensus 211 Hn~~Gla~AN~laA~~aG~~~vd~sv~ 237 (279)
T cd07947 211 HNDFYKAVANAVAAWLYGASWVNCTLL 237 (279)
T ss_pred cCCCChHHHHHHHHHHhCCCEEEEecc
Confidence 4 233 477889999999999999964
No 89
>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional
Probab=77.55 E-value=18 Score=38.45 Aligned_cols=139 Identities=13% Similarity=0.085 Sum_probs=80.6
Q ss_pred hhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCC--CeEEee---cCC-CCHHHHHHHHH
Q 015981 128 PVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGG--AVFGSI---VGG-SNIEERKRCAQ 201 (397)
Q Consensus 128 pe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~--~lf~~i---qGg-~~~~lR~~sa~ 201 (397)
.+..++.....+.|++-.+ -.+....-.+...++.+..++.+.++++.-.+.+ ..|... .|. .+.+.-.+.++
T Consensus 87 ~d~~~e~~~~~g~~~i~i~-~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~ 165 (524)
T PRK12344 87 EDPNLQALLDAGTPVVTIF-GKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLK 165 (524)
T ss_pred cHHHHHHHHhCCCCEEEEE-ECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHH
Confidence 3455666677788876444 1111110111222222333333333333211112 134333 232 45777777888
Q ss_pred HHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHHHcCCcEEecchh
Q 015981 202 EVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 202 ~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v~~GvD~FD~~~p 269 (397)
.+.+.+++-+.|.-......+.+..++++.+.+.+ +.|. |.+ -.| .....+.|+..|+|.+|++.-
T Consensus 166 ~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~--~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~Tl~ 235 (524)
T PRK12344 166 AAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP--GVPLGIHAHNDSGCAVANSLAAVEAGARQVQGTIN 235 (524)
T ss_pred HHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc--CCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecc
Confidence 88888998888765544567788889999888877 3454 443 223 356788899999999999964
No 90
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=77.21 E-value=37 Score=33.10 Aligned_cols=85 Identities=16% Similarity=0.168 Sum_probs=55.3
Q ss_pred CCeEEeecCCCCHHHHHHHHHHHHhcCCceEEE--c----------CccCCCchhhHHHHHHHHHcCCCCCCcccc---c
Q 015981 181 GAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWI--G----------GFGLGESMEERPSLLNAVTDNLPKDWPRMI---C 245 (397)
Q Consensus 181 ~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~I--g----------Gl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l---~ 245 (397)
..+++.+.|+.+.+.-.++++.+.+.+++++-| + |...+.+++...++++++.+.. +.|..+ .
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~--~~Pv~vKl~~ 177 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAV--KIPVIAKLTP 177 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhc--CCCeEEECCC
Confidence 458999999867766667888887666776655 2 1122355666788888877654 356442 2
Q ss_pred CCCChHHHHH-HHHcCCcEEecc
Q 015981 246 GLGLPEEVLQ-GVAAGVDLFDSA 267 (397)
Q Consensus 246 G~g~P~~il~-~v~~GvD~FD~~ 267 (397)
+.....++.. +.+.|+|.+-..
T Consensus 178 ~~~~~~~~a~~~~~~Gadgi~~~ 200 (299)
T cd02940 178 NITDIREIARAAKEGGADGVSAI 200 (299)
T ss_pred CchhHHHHHHHHHHcCCCEEEEe
Confidence 3445667777 557899976543
No 91
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=76.65 E-value=23 Score=35.18 Aligned_cols=124 Identities=11% Similarity=0.058 Sum_probs=69.0
Q ss_pred eecChhhHHHHHHhcCC----cEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeE-EeecCCCCHHHHHH
Q 015981 124 RLIKPVEYMEMITSMKP----NLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVF-GSIVGGSNIEERKR 198 (397)
Q Consensus 124 ~~ltpe~~~~~q~~i~p----Di~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf-~~iqGg~~~~lR~~ 198 (397)
...+++++.++.+-+.+ |+++. |..... -+.+...++|+++... +..++ |-|. . .+
T Consensus 92 vg~~~~~~~~~~~Lv~ag~~~d~i~i--D~a~gh------~~~~~e~I~~ir~~~p----~~~vi~g~V~---t----~e 152 (326)
T PRK05458 92 VGVKDDEYDFVDQLAAEGLTPEYITI--DIAHGH------SDSVINMIQHIKKHLP----ETFVIAGNVG---T----PE 152 (326)
T ss_pred ecCCHHHHHHHHHHHhcCCCCCEEEE--ECCCCc------hHHHHHHHHHHHhhCC----CCeEEEEecC---C----HH
Confidence 33466666666665544 86554 444321 1234445777765211 11122 2232 2 23
Q ss_pred HHHHHHhcCCceEEEcCccCC---C------chhh-HHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecc
Q 015981 199 CAQEVAVRNVSGYWIGGFGLG---E------SMEE-RPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 199 sa~~l~~~~~~G~~IgGl~~g---e------~~~~-~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~ 267 (397)
-++.+.+.|+++..+|+-+.. + .... ....+..+.+.+ +.|.+.. |+-+|.||..|+++|+|..=+.
T Consensus 153 ~a~~l~~aGad~i~vg~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~--~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 153 AVRELENAGADATKVGIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA--RKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred HHHHHHHcCcCEEEECCCCCcccccccccCCCCCccHHHHHHHHHHHc--CCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 456777899999888754320 1 0010 122345554443 3676555 8899999999999999977665
Q ss_pred h
Q 015981 268 Y 268 (397)
Q Consensus 268 ~ 268 (397)
.
T Consensus 231 ~ 231 (326)
T PRK05458 231 S 231 (326)
T ss_pred h
Confidence 3
No 92
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=76.57 E-value=61 Score=31.46 Aligned_cols=41 Identities=17% Similarity=0.267 Sum_probs=28.9
Q ss_pred HHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecch
Q 015981 226 PSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~ 268 (397)
.+.+..+.+.+ +.|.... |+-++.++..++..|+|.+-..-
T Consensus 223 l~~v~~i~~~~--~ipvi~~GGI~~~~da~~~l~aGAd~V~igr 264 (301)
T PRK07259 223 LRMVYQVYQAV--DIPIIGMGGISSAEDAIEFIMAGASAVQVGT 264 (301)
T ss_pred HHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHcCCCceeEcH
Confidence 45566666555 4676544 77799999999999988665443
No 93
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=75.83 E-value=69 Score=31.00 Aligned_cols=132 Identities=14% Similarity=0.122 Sum_probs=69.5
Q ss_pred cChhhHHHHHHhcC-----CcEEEEcCCCCCCCCCH-HHHH---HHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHH
Q 015981 126 IKPVEYMEMITSMK-----PNLWATLADEVPAWANN-KRNK---TSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEER 196 (397)
Q Consensus 126 ltpe~~~~~q~~i~-----pDi~~~L~d~~~~~~~~-kr~~---~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR 196 (397)
.+++++.++.+.+. +|.+-. .-.||..... .... +-+.+-++++++.. +-.++.=+-.+ ..+.
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~iel-N~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~-----~~pv~vKi~~~-~~~~- 171 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYEL-NLSCPHVKGGGIAIGQDPELSADVVKAVKDKT-----DVPVFAKLSPN-VTDI- 171 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEE-ECCCCCCCCCccccccCHHHHHHHHHHHHHhc-----CCCEEEECCCC-hhhH-
Confidence 46889988888775 676633 2344433210 0111 12222333333321 12344444322 2233
Q ss_pred HHHHHHHHhcCCceEEEc----CccC--------------CCchh----hHHHHHHHHHcCCCCCCccccc-CCCChHHH
Q 015981 197 KRCAQEVAVRNVSGYWIG----GFGL--------------GESME----ERPSLLNAVTDNLPKDWPRMIC-GLGLPEEV 253 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~Ig----Gl~~--------------ge~~~----~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~i 253 (397)
.+.++.+.+.|++++.+. |... |-+.. -..+.+..+.+.++ .|.... |+.+|.++
T Consensus 172 ~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~--ipvi~~GGI~s~~da 249 (300)
T TIGR01037 172 TEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVD--IPIIGVGGITSFEDA 249 (300)
T ss_pred HHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCC--CCEEEECCCCCHHHH
Confidence 345566777899999874 2110 00100 01345556666553 676544 77799999
Q ss_pred HHHHHcCCcEEecc
Q 015981 254 LQGVAAGVDLFDSA 267 (397)
Q Consensus 254 l~~v~~GvD~FD~~ 267 (397)
..+++.|+|.+=..
T Consensus 250 ~~~l~~GAd~V~ig 263 (300)
T TIGR01037 250 LEFLMAGASAVQVG 263 (300)
T ss_pred HHHHHcCCCceeec
Confidence 99999998876544
No 94
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=75.65 E-value=29 Score=32.29 Aligned_cols=77 Identities=23% Similarity=0.331 Sum_probs=58.5
Q ss_pred CCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCC---hHHHHHHH
Q 015981 181 GAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGL---PEEVLQGV 257 (397)
Q Consensus 181 ~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~---P~~il~~v 257 (397)
+.++++|.| .+.+.=...++.+.+-|+..+-|- -....-.+.|+.+.+..| +.+.|.|+ |+++-.++
T Consensus 13 ~~vI~Vlr~-~~~e~a~~~a~Ali~gGi~~IEIT-----l~sp~a~e~I~~l~~~~p----~~lIGAGTVL~~~q~~~a~ 82 (211)
T COG0800 13 QPVVPVIRG-DDVEEALPLAKALIEGGIPAIEIT-----LRTPAALEAIRALAKEFP----EALIGAGTVLNPEQARQAI 82 (211)
T ss_pred CCeeEEEEe-CCHHHHHHHHHHHHHcCCCeEEEe-----cCCCCHHHHHHHHHHhCc----ccEEccccccCHHHHHHHH
Confidence 348899986 667777777888888887776663 122334567777777766 67889995 99999999
Q ss_pred HcCCcEEecc
Q 015981 258 AAGVDLFDSA 267 (397)
Q Consensus 258 ~~GvD~FD~~ 267 (397)
+.|.+.+-|+
T Consensus 83 ~aGa~fiVsP 92 (211)
T COG0800 83 AAGAQFIVSP 92 (211)
T ss_pred HcCCCEEECC
Confidence 9999998887
No 95
>PRK00915 2-isopropylmalate synthase; Validated
Probab=75.48 E-value=24 Score=37.39 Aligned_cols=133 Identities=13% Similarity=0.059 Sum_probs=83.1
Q ss_pred HHHHHHhcCCcEEEEcCCCCC-------CCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCC-CCHHHHHHHHHH
Q 015981 131 YMEMITSMKPNLWATLADEVP-------AWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGG-SNIEERKRCAQE 202 (397)
Q Consensus 131 ~~~~q~~i~pDi~~~L~d~~~-------~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg-~~~~lR~~sa~~ 202 (397)
..+.....+.+.+-.+ ..+. ...+.+++...+..+.+++++. .....|.+--++ .+.+.-.+.++.
T Consensus 84 a~~a~~~~~~~~v~i~-~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~-----g~~v~f~~ed~~r~d~~~l~~~~~~ 157 (513)
T PRK00915 84 AAEALKPAEAPRIHTF-IATSPIHMEYKLKMSREEVLEMAVEAVKYARSY-----TDDVEFSAEDATRTDLDFLCRVVEA 157 (513)
T ss_pred HHHHhhcCCCCEEEEE-ECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHC-----CCeEEEEeCCCCCCCHHHHHHHHHH
Confidence 3333335677766444 2221 1123444444555555555431 111256665554 567878888888
Q ss_pred HHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCC--CCcc--ccc-CCC-ChHHHHHHHHcCCcEEecchh
Q 015981 203 VAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPK--DWPR--MIC-GLG-LPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~--~kpr--~l~-G~g-~P~~il~~v~~GvD~FD~~~p 269 (397)
+.+.+++.+.|.-....-.+++..++++.+.+.+|. +.|. |.+ -.| .....+.|+..|+|.+|++.-
T Consensus 158 ~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~ 230 (513)
T PRK00915 158 AIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTIN 230 (513)
T ss_pred HHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEee
Confidence 888898888877655556778899999999988874 2343 333 222 366788999999999999854
No 96
>PLN02495 oxidoreductase, acting on the CH-CH group of donors
Probab=75.16 E-value=24 Score=35.99 Aligned_cols=84 Identities=12% Similarity=0.126 Sum_probs=57.3
Q ss_pred CeEEeecCCCCHHHHHHHHHHHHhcCCceEEEc------------CccCCCchhhHHHHHHHHHcCCCCCCcccc---cC
Q 015981 182 AVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIG------------GFGLGESMEERPSLLNAVTDNLPKDWPRMI---CG 246 (397)
Q Consensus 182 ~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~Ig------------Gl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l---~G 246 (397)
.+++.|-|+...+.-.+.++.+.+.+++++-+- |...+.+++...++++++.+.. ++|..+ +.
T Consensus 115 pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~--~iPv~vKLsPn 192 (385)
T PLN02495 115 ILIASIMEEYNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKA--TVPVWAKMTPN 192 (385)
T ss_pred cEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhh--cCceEEEeCCC
Confidence 599999998888888888888887778887752 1122345555667777776653 467543 34
Q ss_pred CCChHHHHH-HHHcCCcEEecc
Q 015981 247 LGLPEEVLQ-GVAAGVDLFDSA 267 (397)
Q Consensus 247 ~g~P~~il~-~v~~GvD~FD~~ 267 (397)
+..+.++.. +.+.|+|-+-..
T Consensus 193 ~t~i~~ia~aa~~~Gadgi~li 214 (385)
T PLN02495 193 ITDITQPARVALKSGCEGVAAI 214 (385)
T ss_pred hhhHHHHHHHHHHhCCCEEEEe
Confidence 556777787 557888866544
No 97
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=74.19 E-value=21 Score=36.10 Aligned_cols=76 Identities=21% Similarity=0.319 Sum_probs=53.7
Q ss_pred HHHHHHHHhcCCceEEEcCccCCCch---hhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecchhHHh
Q 015981 197 KRCAQEVAVRNVSGYWIGGFGLGESM---EERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAYIYHL 272 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~IgGl~~ge~~---~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~p~~~ 272 (397)
.+-++.+.+.|++|+.+++-+ |... .--.+.|.++.+.+..+.|.++- |+-+..||+.++++|+|..=..-|...
T Consensus 239 ~eda~~a~~~Gvd~I~VS~HG-Grq~~~~~a~~~~L~ei~~av~~~i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~ 317 (367)
T TIGR02708 239 PEDADRALKAGASGIWVTNHG-GRQLDGGPAAFDSLQEVAEAVDKRVPIVFDSGVRRGQHVFKALASGADLVALGRPVIY 317 (367)
T ss_pred HHHHHHHHHcCcCEEEECCcC-ccCCCCCCcHHHHHHHHHHHhCCCCcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHH
Confidence 445667778899999998865 3221 11234555666656555777665 889999999999999998888877554
Q ss_pred h
Q 015981 273 T 273 (397)
Q Consensus 273 a 273 (397)
+
T Consensus 318 ~ 318 (367)
T TIGR02708 318 G 318 (367)
T ss_pred H
Confidence 3
No 98
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=74.16 E-value=25 Score=34.29 Aligned_cols=41 Identities=10% Similarity=0.065 Sum_probs=32.1
Q ss_pred HHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEec
Q 015981 226 PSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~ 266 (397)
.+.|..+.+.++.+.|..-. |+.+++|+..++..|+|.+-.
T Consensus 239 l~~v~~~~~~~~~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 239 LRAVSQIARAPEPGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred HHHHHHHHHhcCCCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 66777777777555676544 888999999999999997654
No 99
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=74.02 E-value=37 Score=33.36 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=75.6
Q ss_pred cChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHh
Q 015981 126 IKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAV 205 (397)
Q Consensus 126 ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~ 205 (397)
+|.-.+..+....|+|++..- -... +.....-+++.+|+.. ++ ....+++-.+|.+++.-.++|+.+.+
T Consensus 18 ~t~~~fR~l~~~~g~~~~~te--mi~~----~~l~~~~~~~~~~~~~----~~-~~~p~i~ql~g~~~~~~~~aa~~~~~ 86 (319)
T TIGR00737 18 VTDSPFRRLVAEYGAGLTVCE--MVSS----EAIVYDSQRTMRLLDI----AE-DETPISVQLFGSDPDTMAEAAKINEE 86 (319)
T ss_pred CCcHHHHHHHHHHCCCEEEEC--CEEE----hhhhcCCHHHHHHhhc----CC-ccceEEEEEeCCCHHHHHHHHHHHHh
Confidence 566788999999999987652 1111 1111122233445432 22 12344444566788888889998888
Q ss_pred cCCceEEEc-CccC--------C----CchhhHHHHHHHHHcCCCCCCcccc---cCCC----ChHHHHH-HHHcCCcEE
Q 015981 206 RNVSGYWIG-GFGL--------G----ESMEERPSLLNAVTDNLPKDWPRMI---CGLG----LPEEVLQ-GVAAGVDLF 264 (397)
Q Consensus 206 ~~~~G~~Ig-Gl~~--------g----e~~~~~~~~v~~~~~~Lp~~kpr~l---~G~g----~P~~il~-~v~~GvD~F 264 (397)
.|++|+-|- |-.. | ..++...++++++.+.++ .|..+ .|.. +..+++. +.+.|+|.+
T Consensus 87 ~G~d~IelN~gcP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~--~pv~vKir~g~~~~~~~~~~~a~~l~~~G~d~i 164 (319)
T TIGR00737 87 LGADIIDINMGCPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVD--IPVTVKIRIGWDDAHINAVEAARIAEDAGAQAV 164 (319)
T ss_pred CCCCEEEEECCCCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcC--CCEEEEEEcccCCCcchHHHHHHHHHHhCCCEE
Confidence 899998773 2211 1 233455677777776653 56432 2321 3456654 456899999
Q ss_pred ecc
Q 015981 265 DSA 267 (397)
Q Consensus 265 D~~ 267 (397)
...
T Consensus 165 ~vh 167 (319)
T TIGR00737 165 TLH 167 (319)
T ss_pred EEE
Confidence 875
No 100
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=73.57 E-value=47 Score=31.92 Aligned_cols=82 Identities=22% Similarity=0.216 Sum_probs=50.9
Q ss_pred eEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCcc--------CCCchhhHHHHHHHHHcCCCCCCcccc-cCC-CC---
Q 015981 183 VFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFG--------LGESMEERPSLLNAVTDNLPKDWPRMI-CGL-GL--- 249 (397)
Q Consensus 183 lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~--------~ge~~~~~~~~v~~~~~~Lp~~kpr~l-~G~-g~--- 249 (397)
+++.|- |.+.+--.++++.+.+.+++++-|---. ...+++...++++++.+.+ +.|..+ ++. -+
T Consensus 101 vi~si~-g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~--~~pv~vKl~~~~~~~~ 177 (289)
T cd02810 101 LIASVG-GSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV--DIPLLVKLSPYFDLED 177 (289)
T ss_pred EEEEec-cCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc--CCCEEEEeCCCCCHHH
Confidence 555554 4566666678888888788888774211 1234455677888888776 567543 222 23
Q ss_pred hHHHHH-HHHcCCcEEecc
Q 015981 250 PEEVLQ-GVAAGVDLFDSA 267 (397)
Q Consensus 250 P~~il~-~v~~GvD~FD~~ 267 (397)
..+++. +.+.|+|.+...
T Consensus 178 ~~~~a~~l~~~Gad~i~~~ 196 (289)
T cd02810 178 IVELAKAAERAGADGLTAI 196 (289)
T ss_pred HHHHHHHHHHcCCCEEEEE
Confidence 234444 456899999875
No 101
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=73.21 E-value=15 Score=36.97 Aligned_cols=72 Identities=14% Similarity=0.189 Sum_probs=49.5
Q ss_pred HHHHHHHhcCCceEEEcCccCCCchh---hHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecchhHHh
Q 015981 198 RCAQEVAVRNVSGYWIGGFGLGESME---ERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAYIYHL 272 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~ge~~~---~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~p~~~ 272 (397)
+-++.+.+.|++|+.+++-+ |-..+ .-.+.+.++.+..+ .|.++- |+-++.||+.++++|.|..=...|...
T Consensus 248 eda~~a~~~G~d~I~VSnhG-Grqld~~~~~~~~L~ei~~~~~--~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~ 323 (361)
T cd04736 248 EDAKRCIELGADGVILSNHG-GRQLDDAIAPIEALAEIVAATY--KPVLIDSGIRRGSDIVKALALGANAVLLGRATLY 323 (361)
T ss_pred HHHHHHHHCCcCEEEECCCC-cCCCcCCccHHHHHHHHHHHhC--CeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 34566777899999998755 32221 12344444554442 666665 899999999999999998777766553
No 102
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=72.55 E-value=43 Score=33.26 Aligned_cols=133 Identities=23% Similarity=0.225 Sum_probs=71.0
Q ss_pred hhhHHHHHHhcCCcEEEE-cC--CCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHH
Q 015981 128 PVEYMEMITSMKPNLWAT-LA--DEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVA 204 (397)
Q Consensus 128 pe~~~~~q~~i~pDi~~~-L~--d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~ 204 (397)
++++.+.++.+++|.... +. .+...+.+.+. .+..++.++...+.- +-+++.=..|... -.+.++.+.
T Consensus 130 ~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~----f~~~le~i~~i~~~~--~vPVivK~~g~g~---~~~~a~~L~ 200 (333)
T TIGR02151 130 PEEAQEAIDMIEADALAIHLNVLQELVQPEGDRN----FKGWLEKIAEICSQL--SVPVIVKEVGFGI---SKEVAKLLA 200 (333)
T ss_pred HHHHHHHHHHhcCCCEEEcCcccccccCCCCCcC----HHHHHHHHHHHHHhc--CCCEEEEecCCCC---CHHHHHHHH
Confidence 788899999999997632 21 11111111111 122222222222211 1122222223221 235667788
Q ss_pred hcCCceEEEcCccCCCch-----------------hh----HHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCc
Q 015981 205 VRNVSGYWIGGFGLGESM-----------------EE----RPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVD 262 (397)
Q Consensus 205 ~~~~~G~~IgGl~~ge~~-----------------~~----~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD 262 (397)
+.|++++.++|-+ |.+. .. ..+.+..+.+ +..+.|.... |+-++.++..++.+|+|
T Consensus 201 ~aGvd~I~Vsg~g-Gt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~-~~~~ipVIasGGI~~~~di~kaLalGAd 278 (333)
T TIGR02151 201 DAGVSAIDVAGAG-GTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRS-DAPDAPIIASGGLRTGLDVAKAIALGAD 278 (333)
T ss_pred HcCCCEEEECCCC-CCcccchhhhcccccccchhhhcccHhHHHHHHHHHh-cCCCCeEEEECCCCCHHHHHHHHHhCCC
Confidence 8999999999854 3210 00 1123333333 2224666555 78899999999999999
Q ss_pred EEecchhHH
Q 015981 263 LFDSAYIYH 271 (397)
Q Consensus 263 ~FD~~~p~~ 271 (397)
.+=..-|..
T Consensus 279 ~V~igr~~L 287 (333)
T TIGR02151 279 AVGMARPFL 287 (333)
T ss_pred eehhhHHHH
Confidence 887776543
No 103
>PRK08185 hypothetical protein; Provisional
Probab=72.28 E-value=59 Score=31.66 Aligned_cols=129 Identities=16% Similarity=0.136 Sum_probs=66.8
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCC-------HH---HH
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSN-------IE---ER 196 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~-------~~---lR 196 (397)
+.+...+.. ..|.+.+|. |. -.. + .+.-++.|.+..+.|-...-.-..=+|.|-|..+ .+ --
T Consensus 80 ~~e~i~~ai-~~Gf~SVM~-D~-S~l--~---~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~p 151 (283)
T PRK08185 80 TIEDVMRAI-RCGFTSVMI-DG-SLL--P---YEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDP 151 (283)
T ss_pred CHHHHHHHH-HcCCCEEEE-eC-CCC--C---HHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCH
Confidence 455555544 457777665 22 211 1 3444555555555443321100112366533111 00 12
Q ss_pred HHHHHHHHhcCCceEEE-----cCccCCC-chhhHHHHHHHHHcCCCCCCcccccC-CCCh-HHHHHHHHcCCcEEe
Q 015981 197 KRCAQEVAVRNVSGYWI-----GGFGLGE-SMEERPSLLNAVTDNLPKDWPRMICG-LGLP-EEVLQGVAAGVDLFD 265 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~I-----gGl~~ge-~~~~~~~~v~~~~~~Lp~~kpr~l~G-~g~P-~~il~~v~~GvD~FD 265 (397)
.++.+.+.+.+++-+++ +|.--+. .+....+.++.+.+.+ +.|.+++| .|.| +++-.++.+||-=+-
T Consensus 152 eea~~f~~~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~--~iPLVlHGgsg~~~e~~~~ai~~GI~KiN 226 (283)
T PRK08185 152 EQAEDFVSRTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERV--DIPLVLHGGSANPDAEIAESVQLGVGKIN 226 (283)
T ss_pred HHHHHHHHhhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhh--CCCEEEECCCCCCHHHHHHHHHCCCeEEE
Confidence 34455555568888887 5553221 2223366777777766 58999885 4555 556668899986544
No 104
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=72.11 E-value=58 Score=29.28 Aligned_cols=122 Identities=13% Similarity=0.031 Sum_probs=62.1
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHhc
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVR 206 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~~ 206 (397)
+++++++.....|+|.+...+... . .. ..+++.+.+. +..+++..+......|.+. +.+.
T Consensus 68 d~~~~~~~~~~~g~dgv~vh~~~~--~-~~----------~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~---~~~~ 127 (211)
T cd00429 68 NPERYIEAFAKAGADIITFHAEAT--D-HL----------HRTIQLIKEL----GMKAGVALNPGTPVEVLEP---YLDE 127 (211)
T ss_pred CHHHHHHHHHHcCCCEEEECccch--h-hH----------HHHHHHHHHC----CCeEEEEecCCCCHHHHHH---HHhh
Confidence 456788888899999986653321 1 11 1122222221 2344444433222333322 2221
Q ss_pred CCceEEEcCccCCCch----hhHHHHHHHHHcCCC---CCCcccccCCCChHHHHHHHHcCCcEEecchh
Q 015981 207 NVSGYWIGGFGLGESM----EERPSLLNAVTDNLP---KDWPRMICGLGLPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 207 ~~~G~~IgGl~~ge~~----~~~~~~v~~~~~~Lp---~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p 269 (397)
.+.+.++++..|.+. ....+.++.+.+..+ .+.|..+-|==+|+++..++..|+|.|-...+
T Consensus 128 -~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsa 196 (211)
T cd00429 128 -VDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSA 196 (211)
T ss_pred -CCEEEEEEECCCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHH
Confidence 455555554322211 122334444444333 24576665422589999999999998876643
No 105
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=71.35 E-value=71 Score=30.53 Aligned_cols=121 Identities=14% Similarity=0.058 Sum_probs=69.8
Q ss_pred ecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHH
Q 015981 125 LIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVA 204 (397)
Q Consensus 125 ~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~ 204 (397)
++++..-++.....|+|++.......+ .+.++.-+++.... .-..+.=++. ..++ +...
T Consensus 119 fi~~~~qi~~a~~~GAD~VlLi~~~l~----~~~l~~li~~a~~l----------Gl~~lvevh~--~~E~-----~~A~ 177 (260)
T PRK00278 119 FIIDPYQIYEARAAGADAILLIVAALD----DEQLKELLDYAHSL----------GLDVLVEVHD--EEEL-----ERAL 177 (260)
T ss_pred ecCCHHHHHHHHHcCCCEEEEEeccCC----HHHHHHHHHHHHHc----------CCeEEEEeCC--HHHH-----HHHH
Confidence 556666677788999999977644322 23444444443321 0113333432 2233 2233
Q ss_pred hcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCccc-ccCCCChHHHHHHHHcCCcEEecc
Q 015981 205 VRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRM-ICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 205 ~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~-l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
+.+++-+.+.+...... +.-.+.+..+.+.+|.+.|.+ .-|+.+|.++-.+..+|+|.|-..
T Consensus 178 ~~gadiIgin~rdl~~~-~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVG 240 (260)
T PRK00278 178 KLGAPLIGINNRNLKTF-EVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVG 240 (260)
T ss_pred HcCCCEEEECCCCcccc-cCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEEC
Confidence 56777776765432211 111334455566777666765 468889999999999999988543
No 106
>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway. DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....
Probab=71.18 E-value=48 Score=32.09 Aligned_cols=135 Identities=16% Similarity=0.226 Sum_probs=76.3
Q ss_pred ChhhHHHHHHhcC--CcEEEEcCCCCCCCCC---HHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCC-CHHHHHHHH
Q 015981 127 KPVEYMEMITSMK--PNLWATLADEVPAWAN---NKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGS-NIEERKRCA 200 (397)
Q Consensus 127 tpe~~~~~q~~i~--pDi~~~L~d~~~~~~~---~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~-~~~lR~~sa 200 (397)
..++|.+..+.+. +|++.. .-.||.... .......+....+|.++.. +-+++.=+.... +......+
T Consensus 110 ~~~d~~~~a~~~~~~ad~lEl-N~ScPn~~~~~~~~~~~~~~~~i~~~v~~~~-----~~Pv~vKL~p~~~~~~~~~~~- 182 (295)
T PF01180_consen 110 EIEDWAELAKRLEAGADALEL-NLSCPNVPGGRPFGQDPELVAEIVRAVREAV-----DIPVFVKLSPNFTDIEPFAIA- 182 (295)
T ss_dssp HHHHHHHHHHHHHHHCSEEEE-ESTSTTSTTSGGGGGHHHHHHHHHHHHHHHH-----SSEEEEEE-STSSCHHHHHHH-
T ss_pred hHHHHHHHHHHhcCcCCceEE-EeeccCCCCccccccCHHHHHHHHHHHHhcc-----CCCEEEEecCCCCchHHHHHH-
Confidence 3788888887755 786643 234443321 1223344444555555432 124666665533 33333333
Q ss_pred HHHHhcCCceEE----Ec-------------------CccCCCch-hhHHHHHHHHHcCCCCCCccccc-CCCChHHHHH
Q 015981 201 QEVAVRNVSGYW----IG-------------------GFGLGESM-EERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQ 255 (397)
Q Consensus 201 ~~l~~~~~~G~~----Ig-------------------Gl~~ge~~-~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~ 255 (397)
..+.+.+++|+. +. |++ |... ..-.+.|..+...++.+.|..-. |+.++.|++.
T Consensus 183 ~~~~~~g~~gi~~~Nt~~~~~~id~~~~~~~~~~~~gGlS-G~~i~p~aL~~V~~~~~~~~~~i~Iig~GGI~s~~da~e 261 (295)
T PF01180_consen 183 AELAADGADGIVAINTFGQGDAIDLETRRPVLGNGFGGLS-GPAIRPIALRWVRELRKALGQDIPIIGVGGIHSGEDAIE 261 (295)
T ss_dssp HHHHTHTECEEEE---EEEEE-EETTTTEESSSGGEEEEE-EGGGHHHHHHHHHHHHHHTTTSSEEEEESS--SHHHHHH
T ss_pred HHhhccceeEEEEecCccCcccccchhcceeeccccCCcC-chhhhhHHHHHHHHHHhccccceEEEEeCCcCCHHHHHH
Confidence 333366777776 21 121 1111 22356777778888877776643 8889999999
Q ss_pred HHHcCCcEEecchh
Q 015981 256 GVAAGVDLFDSAYI 269 (397)
Q Consensus 256 ~v~~GvD~FD~~~p 269 (397)
.+.+|.|.+-..-.
T Consensus 262 ~l~aGA~~Vqv~Sa 275 (295)
T PF01180_consen 262 FLMAGASAVQVCSA 275 (295)
T ss_dssp HHHHTESEEEESHH
T ss_pred HHHhCCCHheechh
Confidence 99999999887643
No 107
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=70.67 E-value=42 Score=33.51 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=45.5
Q ss_pred HHHHhc--CCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccC-CCChHHHHHHHHcCCcEEe
Q 015981 201 QEVAVR--NVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICG-LGLPEEVLQGVAAGVDLFD 265 (397)
Q Consensus 201 ~~l~~~--~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G-~g~P~~il~~v~~GvD~FD 265 (397)
+.|.+. +++-++|.- +.|.+ +...+.|+++.+..|. +-.+-| +.+|++...++..|+|.+=
T Consensus 113 ~~L~~a~~~~d~iviD~-AhGhs-~~~i~~ik~ir~~~p~--~~viaGNV~T~e~a~~Li~aGAD~ik 176 (343)
T TIGR01305 113 TSILEAVPQLKFICLDV-ANGYS-EHFVEFVKLVREAFPE--HTIMAGNVVTGEMVEELILSGADIVK 176 (343)
T ss_pred HHHHhcCCCCCEEEEEC-CCCcH-HHHHHHHHHHHhhCCC--CeEEEecccCHHHHHHHHHcCCCEEE
Confidence 345444 477888873 44655 4457788899988873 455678 9999999999999999883
No 108
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=70.22 E-value=94 Score=31.14 Aligned_cols=76 Identities=14% Similarity=0.171 Sum_probs=49.2
Q ss_pred HHHHHHHHhcCCceEEEcCccCCCch---hhHHHHHHHHHc---CCCCCCccccc-CCCChHHHHHHHHcCCcEEecchh
Q 015981 197 KRCAQEVAVRNVSGYWIGGFGLGESM---EERPSLLNAVTD---NLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~IgGl~~ge~~---~~~~~~v~~~~~---~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~p 269 (397)
.+-++.+.+.|++++.+.|-+ |-.. ..-...+.++.+ .+..+.|.+.. |+.+..||+.++.+|.|..=..-|
T Consensus 224 ~~dA~~a~~~G~d~I~vsnhg-G~~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~ 302 (344)
T cd02922 224 VEDAVLAAEYGVDGIVLSNHG-GRQLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCLGAKAVGLGRP 302 (344)
T ss_pred HHHHHHHHHcCCCEEEEECCC-cccCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECHH
Confidence 344566778899999998854 3211 111223334433 23334566554 899999999999999998877766
Q ss_pred HHhh
Q 015981 270 YHLT 273 (397)
Q Consensus 270 ~~~a 273 (397)
...+
T Consensus 303 ~l~~ 306 (344)
T cd02922 303 FLYA 306 (344)
T ss_pred HHHH
Confidence 5443
No 109
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=69.61 E-value=24 Score=30.18 Aligned_cols=82 Identities=15% Similarity=0.076 Sum_probs=49.8
Q ss_pred eEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccC-CCChHHHHHHHHcCC
Q 015981 183 VFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICG-LGLPEEVLQGVAAGV 261 (397)
Q Consensus 183 lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G-~g~P~~il~~v~~Gv 261 (397)
=|-+|-.|.+.. -++.++...+.+.+-++|.++. +...+.+.++++...+.-+. .+.++.| .--+++...+.++||
T Consensus 30 GfeVi~lg~~~s-~e~~v~aa~e~~adii~iSsl~-~~~~~~~~~~~~~L~~~g~~-~i~vivGG~~~~~~~~~l~~~Gv 106 (132)
T TIGR00640 30 GFDVDVGPLFQT-PEEIARQAVEADVHVVGVSSLA-GGHLTLVPALRKELDKLGRP-DILVVVGGVIPPQDFDELKEMGV 106 (132)
T ss_pred CcEEEECCCCCC-HHHHHHHHHHcCCCEEEEcCch-hhhHHHHHHHHHHHHhcCCC-CCEEEEeCCCChHhHHHHHHCCC
Confidence 366666555421 1245566667788899898765 34445566677666554333 3334444 334567888899999
Q ss_pred cEEecc
Q 015981 262 DLFDSA 267 (397)
Q Consensus 262 D~FD~~ 267 (397)
|-|=.+
T Consensus 107 d~~~~~ 112 (132)
T TIGR00640 107 AEIFGP 112 (132)
T ss_pred CEEECC
Confidence 866433
No 110
>PRK09389 (R)-citramalate synthase; Provisional
Probab=69.55 E-value=43 Score=35.21 Aligned_cols=131 Identities=8% Similarity=-0.015 Sum_probs=79.7
Q ss_pred HHHHHhcCCcEEEEcCCCCCC-------CCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCC-CCHHHHHHHHHHH
Q 015981 132 MEMITSMKPNLWATLADEVPA-------WANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGG-SNIEERKRCAQEV 203 (397)
Q Consensus 132 ~~~q~~i~pDi~~~L~d~~~~-------~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg-~~~~lR~~sa~~l 203 (397)
++.....+.|++-.+ ..+.. ..+.+++.+.+..+.+++++ + .....|.+--++ .+++.-.+.++.+
T Consensus 79 i~~a~~~g~~~v~i~-~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~----~-g~~v~~~~ed~~r~~~~~l~~~~~~~ 152 (488)
T PRK09389 79 IDAALECDVDSVHLV-VPTSDLHIEYKLKKTREEVLETAVEAVEYAKD----H-GLIVELSGEDASRADLDFLKELYKAG 152 (488)
T ss_pred HHHHHhCCcCEEEEE-EccCHHHHHHHhCCCHHHHHHHHHHHHHHHHH----C-CCEEEEEEeeCCCCCHHHHHHHHHHH
Confidence 555556788875443 22211 12333444444444444432 1 111134444343 5678888888888
Q ss_pred HhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHHHcCCcEEecchhH
Q 015981 204 AVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGVAAGVDLFDSAYIY 270 (397)
Q Consensus 204 ~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v~~GvD~FD~~~p~ 270 (397)
.+.+.+-+.|.-....-.+.++.++++.+.+.++ .|. |.+ -.| .....+.|+..|+|.+|++.--
T Consensus 153 ~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~--v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~G 221 (488)
T PRK09389 153 IEAGADRICFCDTVGILTPEKTYELFKRLSELVK--GPVSIHCHNDFGLAVANTLAALAAGADQVHVTING 221 (488)
T ss_pred HhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC--CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEccc
Confidence 8888888887665555677888888888877654 343 443 223 2667889999999999999643
No 111
>PRK05835 fructose-bisphosphate aldolase; Provisional
Probab=68.93 E-value=67 Score=31.71 Aligned_cols=116 Identities=15% Similarity=0.067 Sum_probs=62.8
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCH----HH------H
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNI----EE------R 196 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~----~l------R 196 (397)
+.|...+..+. |.+-+|. |.-.. + .+.-+++|.+..+.+-...-.-..=+|.|-|+.+. +. -
T Consensus 86 ~~e~i~~ai~~-GftSVM~--DgS~l--~---~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdP 157 (307)
T PRK05835 86 TFESCEKAVKA-GFTSVMI--DASHH--A---FEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNP 157 (307)
T ss_pred CHHHHHHHHHc-CCCEEEE--eCCCC--C---HHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCH
Confidence 45666655554 7777776 32211 2 34566666666655543211001135555443221 00 2
Q ss_pred HHHHHHHHhcCCceEEE--cCccCC----CchhhHHHHHHHHHcCCCCCCcccccCC-CChHH
Q 015981 197 KRCAQEVAVRNVSGYWI--GGFGLG----ESMEERPSLLNAVTDNLPKDWPRMICGL-GLPEE 252 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~I--gGl~~g----e~~~~~~~~v~~~~~~Lp~~kpr~l~G~-g~P~~ 252 (397)
.++.+++.+.+++-+++ |-.+.- ..+.-..+.++.+.+.+ +.|..|+|- |.|.+
T Consensus 158 eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~--~iPLVLHGgSGip~e 218 (307)
T PRK05835 158 KEAEQFVKESQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT--NIPLVLHGASAIPDD 218 (307)
T ss_pred HHHHHHHHhhCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCchH
Confidence 45667777778887665 333311 12233467777777776 589999965 56875
No 112
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=68.77 E-value=30 Score=33.73 Aligned_cols=117 Identities=11% Similarity=0.011 Sum_probs=72.8
Q ss_pred hhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHhcCC
Q 015981 129 VEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNV 208 (397)
Q Consensus 129 e~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~~~~ 208 (397)
....+..+..|.-.++.- .. ..+.+.+++. .+ +.++.-+-+..+.+.-.+.++.+.+.++
T Consensus 84 ~~la~aa~~~g~~~~~~~--~~--~~~~~~i~~~--------------~~--~~~~~ql~~~~~~~~~~~~i~~~~~~g~ 143 (299)
T cd02809 84 LATARAAAAAGIPFTLST--VS--TTSLEEVAAA--------------AP--GPRWFQLYVPRDREITEDLLRRAEAAGY 143 (299)
T ss_pred HHHHHHHHHcCCCEEecC--CC--cCCHHHHHHh--------------cC--CCeEEEEeecCCHHHHHHHHHHHHHcCC
Confidence 677788888887666553 11 1122222111 11 2344444455566666677777777888
Q ss_pred ceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 209 SGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 209 ~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
+.+.+..=...+.....++.++++.+.++ .|..+-++.++.+...+.+.|+|.++..
T Consensus 144 ~~i~l~~~~p~~~~~~~~~~i~~l~~~~~--~pvivK~v~s~~~a~~a~~~G~d~I~v~ 200 (299)
T cd02809 144 KALVLTVDTPVLGRRLTWDDLAWLRSQWK--GPLILKGILTPEDALRAVDAGADGIVVS 200 (299)
T ss_pred CEEEEecCCCCCCCCCCHHHHHHHHHhcC--CCEEEeecCCHHHHHHHHHCCCCEEEEc
Confidence 88877421111000122466777777765 6777778899999999999999999976
No 113
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=68.32 E-value=8.1 Score=32.95 Aligned_cols=51 Identities=18% Similarity=0.266 Sum_probs=37.2
Q ss_pred CCCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015981 319 IVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRR 387 (397)
Q Consensus 319 l~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~~~~ 387 (397)
|...=-|+.|+|-+=+ ..+- ..=..+-+.||+.|.+|.=++-+..|+..|+
T Consensus 37 L~~~LRC~vCqnqsia------dS~a------------~iA~dmR~~Vr~~i~~G~Sd~eI~~~~v~RY 87 (126)
T TIGR03147 37 LAKSLRCPQCQNQNLV------ESNS------------PIAYDLRHEVYSMVNEGKSNQQIIDFMTARF 87 (126)
T ss_pred HHHhCCCCCCCCCChh------hcCC------------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 3344469999998854 2222 2334566789999999999999999998886
No 114
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=68.23 E-value=73 Score=29.71 Aligned_cols=119 Identities=16% Similarity=0.160 Sum_probs=66.4
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEee-cCCCCHHHHHHHHHHHHh
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSI-VGGSNIEERKRCAQEVAV 205 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~i-qGg~~~~lR~~sa~~l~~ 205 (397)
.|+.|++.....|+|++..=.+.+ ..+.|+++|.++. +.-.|+. -.++..+.-...+..+
T Consensus 69 ~p~~~i~~~~~~gad~i~~H~Ea~----------~~~~~~l~~ik~~-------g~k~GlalnP~Tp~~~i~~~l~~~-- 129 (220)
T PRK08883 69 PVDRIIPDFAKAGASMITFHVEAS----------EHVDRTLQLIKEH-------GCQAGVVLNPATPLHHLEYIMDKV-- 129 (220)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCc----------ccHHHHHHHHHHc-------CCcEEEEeCCCCCHHHHHHHHHhC--
Confidence 599999999999999887754432 1255677766642 3333333 3344444333333322
Q ss_pred cCCceEEEcCccC---CC-chhhHHHHHHHHHcCCCC---CCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 206 RNVSGYWIGGFGL---GE-SMEERPSLLNAVTDNLPK---DWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 206 ~~~~G~~IgGl~~---ge-~~~~~~~~v~~~~~~Lp~---~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
+.+.+=+... |. -.+...+-++.+.+.+++ +.|..+-|--++..+..+++.|+|.|-..
T Consensus 130 ---D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvG 195 (220)
T PRK08883 130 ---DLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAG 195 (220)
T ss_pred ---CeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 2222211111 11 111223334444444433 35555555556999999999999999765
No 115
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=68.21 E-value=32 Score=34.56 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=50.1
Q ss_pred HHHHHHHhcCCceEEEcCccCCCc---hhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecchhHHh
Q 015981 198 RCAQEVAVRNVSGYWIGGFGLGES---MEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAYIYHL 272 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~ge~---~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~p~~~ 272 (397)
+-++.+.+.|++|+.+.|-+ |.. ..-..+.+.++.+.+..+.|.+.. |+-+..||+.++++|.|..=..-|...
T Consensus 233 ~dA~~a~~~G~d~I~vsnhG-Gr~ld~~~~~~~~l~~i~~a~~~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~ 310 (351)
T cd04737 233 EDADVAINAGADGIWVSNHG-GRQLDGGPASFDSLPEIAEAVNHRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLY 310 (351)
T ss_pred HHHHHHHHcCCCEEEEeCCC-CccCCCCchHHHHHHHHHHHhCCCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 34556667899999996533 211 111235566666666556777765 899999999999999997666555443
No 116
>PLN02334 ribulose-phosphate 3-epimerase
Probab=68.15 E-value=65 Score=29.98 Aligned_cols=122 Identities=12% Similarity=0.201 Sum_probs=71.3
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCC-CCHHHHHHHHHHHHh
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGG-SNIEERKRCAQEVAV 205 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg-~~~~lR~~sa~~l~~ 205 (397)
.|+++++.....|+|++..-...... + ...++++++.+ .+..+|+...- ...+.. +.+.+
T Consensus 76 ~p~d~~~~~~~~gad~v~vH~~q~~~----d----~~~~~~~~i~~-------~g~~iGls~~~~t~~~~~----~~~~~ 136 (229)
T PLN02334 76 NPEDYVPDFAKAGASIFTFHIEQAST----I----HLHRLIQQIKS-------AGMKAGVVLNPGTPVEAV----EPVVE 136 (229)
T ss_pred CHHHHHHHHHHcCCCEEEEeeccccc----h----hHHHHHHHHHH-------CCCeEEEEECCCCCHHHH----HHHHh
Confidence 57999999999999988443221000 0 11233444332 13356666532 223322 22333
Q ss_pred cC-CceEEEcCccCCCchh----hHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecch
Q 015981 206 RN-VSGYWIGGFGLGESME----ERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 206 ~~-~~G~~IgGl~~ge~~~----~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~ 268 (397)
.+ ++.+.++.+..|.+.+ ...+.++.+.+.++ +.|..+-|=-++.++..+++.|+|.|-...
T Consensus 137 ~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~~-~~~I~a~GGI~~e~i~~l~~aGad~vvvgs 203 (229)
T PLN02334 137 KGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYP-ELDIEVDGGVGPSTIDKAAEAGANVIVAGS 203 (229)
T ss_pred ccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhCC-CCcEEEeCCCCHHHHHHHHHcCCCEEEECh
Confidence 32 7777777766443332 23445566665555 357666665599999999999999997663
No 117
>PLN03228 methylthioalkylmalate synthase; Provisional
Probab=68.11 E-value=44 Score=35.29 Aligned_cols=79 Identities=19% Similarity=0.090 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCC--CCcc--ccc-CCC-ChHHHHHHHHcCCcEE
Q 015981 191 SNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPK--DWPR--MIC-GLG-LPEEVLQGVAAGVDLF 264 (397)
Q Consensus 191 ~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~--~kpr--~l~-G~g-~P~~il~~v~~GvD~F 264 (397)
.+.+.-.+.++.+.+.+++.+.|.-....-.+.+..++++.+.+.+|. +.|. |.+ -.| .....+.|+..|+|.+
T Consensus 236 td~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~V 315 (503)
T PLN03228 236 SDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQV 315 (503)
T ss_pred cCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEE
Confidence 567777788888888899988887655556778889999999888874 2343 443 222 3567889999999999
Q ss_pred ecchh
Q 015981 265 DSAYI 269 (397)
Q Consensus 265 D~~~p 269 (397)
|++.-
T Consensus 316 d~Tv~ 320 (503)
T PLN03228 316 EVTIN 320 (503)
T ss_pred EEecc
Confidence 99854
No 118
>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.
Probab=67.28 E-value=47 Score=34.98 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=72.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCC-CCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHH
Q 015981 155 NNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGG-SNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVT 233 (397)
Q Consensus 155 ~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg-~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~ 233 (397)
+.+++.+.+..+.+++++. .....|..--++ .+++.-.+.++.+.+.+++-+.|.-....-.+++..++++.+.
T Consensus 111 s~~e~l~~~~~~v~~a~~~-----g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~ 185 (494)
T TIGR00973 111 TRDEVLERAVGMVKYAKNF-----TDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLR 185 (494)
T ss_pred CHHHHHHHHHHHHHHHHHc-----CCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHH
Confidence 3344444444555555431 112245555444 6778888888888888988888776555567788999999998
Q ss_pred cCCCC--CCcc--ccc-CCC-ChHHHHHHHHcCCcEEecchh
Q 015981 234 DNLPK--DWPR--MIC-GLG-LPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 234 ~~Lp~--~kpr--~l~-G~g-~P~~il~~v~~GvD~FD~~~p 269 (397)
+.+|. +.|. |.+ -.| .....+.|+..|+|.+|++.-
T Consensus 186 ~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~ 227 (494)
T TIGR00973 186 ENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTIN 227 (494)
T ss_pred HhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEee
Confidence 88875 2333 333 122 256788899999999999853
No 119
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=67.09 E-value=1.2e+02 Score=28.81 Aligned_cols=143 Identities=17% Similarity=0.058 Sum_probs=87.5
Q ss_pred CceEEEcCCCceecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHH---HHHHHHHHHHHHHHHhCCCC--CCeEEee
Q 015981 113 TGASFETPCGRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNK---TSVDRTVKWLDECIARSPAG--GAVFGSI 187 (397)
Q Consensus 113 ~gv~~~s~~G~~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~---~sverT~~w~~~~l~~~~~~--~~lf~~i 187 (397)
.|..+.-|.|.++ |++.+..+.-+.|++.. |-...+...|++- ++|+-+++-++-..+...+- ..++|.-
T Consensus 87 ~~l~inaHvGfvd---E~~~eklk~~~vdvvsL--DfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~ 161 (275)
T COG1856 87 TGLLINAHVGFVD---ESDLEKLKEELVDVVSL--DFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLD 161 (275)
T ss_pred hCeEEEEEeeecc---HHHHHHHHHhcCcEEEE--eecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEec
Confidence 3566666777655 99999999999998743 4343333334433 34655555443322211110 1245555
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEcCcc----------CCCchhhHHHHHHHHHcCCCCCCcccccCCCCh------H
Q 015981 188 VGGSNIEERKRCAQEVAVRNVSGYWIGGFG----------LGESMEERPSLLNAVTDNLPKDWPRMICGLGLP------E 251 (397)
Q Consensus 188 qGg~~~~lR~~sa~~l~~~~~~G~~IgGl~----------~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P------~ 251 (397)
-|+..-++ ++++-+.+.+.+..++-++- ...+.+|..++++.+.+..|. |. ..|+..| .
T Consensus 162 ~gki~~e~--kaIdiL~~~~~DalVl~vliPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~--pv-~iGCmrP~Ge~rvk 236 (275)
T COG1856 162 FGKIHGEF--KAIDILVNYEPDALVLVVLIPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN--PV-SIGCMRPRGEWRVK 236 (275)
T ss_pred cCcccchH--HHHHHHhcCCCCeEEEEEEecCCchhccCCCCcCHHHHHHHHHHHHHhCCC--Ce-eEeecCcCchhHHH
Confidence 56655553 46777777788887776653 123557788899999999986 54 3355444 3
Q ss_pred HHHHHHHcCCcEEe
Q 015981 252 EVLQGVAAGVDLFD 265 (397)
Q Consensus 252 ~il~~v~~GvD~FD 265 (397)
-=-.+|.+|||-+-
T Consensus 237 ~d~~av~~gVd~It 250 (275)
T COG1856 237 LDKEAVLAGVDRIT 250 (275)
T ss_pred HHHHHHHcCCceee
Confidence 44567889999763
No 120
>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein. This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.
Probab=66.45 E-value=62 Score=34.43 Aligned_cols=137 Identities=12% Similarity=0.068 Sum_probs=87.1
Q ss_pred cChhhHHHHHHhcCCcEEEEcCCCCC-------CCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEee---cC-CCCHH
Q 015981 126 IKPVEYMEMITSMKPNLWATLADEVP-------AWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSI---VG-GSNIE 194 (397)
Q Consensus 126 ltpe~~~~~q~~i~pDi~~~L~d~~~-------~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~i---qG-g~~~~ 194 (397)
...+.-++.....+.+++..+ -.+. ...+.+++...+..+.+++++. . ....|..- -| -.+++
T Consensus 81 ~~~d~~~ea~~~~~~~~v~i~-~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~----g-~~V~~~~e~f~D~~r~~~~ 154 (526)
T TIGR00977 81 VEEDKMLQALIKAETPVVTIF-GKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQ----G-DEVIYDAEHFFDGYKANPE 154 (526)
T ss_pred CchHHHHHHHhcCCCCEEEEE-eCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc----C-CeEEEEeeeeeecccCCHH
Confidence 345666777777888876554 1221 1134445555555555555431 0 01123222 23 26788
Q ss_pred HHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCc--cccc-CCC-ChHHHHHHHHcCCcEEecchh
Q 015981 195 ERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWP--RMIC-GLG-LPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 195 lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kp--r~l~-G~g-~P~~il~~v~~GvD~FD~~~p 269 (397)
...+.++.+.+.+.+-+.|.-....-.+.+..++++.+.+.+|. .+ .|.+ -.| ....-+.|+..|+|.+|++.-
T Consensus 155 ~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~-~~i~vH~HND~GlAvANslaAv~AGA~~Vd~Tin 232 (526)
T TIGR00977 155 YALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQ-PQLGIHAHNDSGTAVANSLLAVEAGATMVQGTIN 232 (526)
T ss_pred HHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCC-CEEEEEECCCCChHHHHHHHHHHhCCCEEEEecc
Confidence 88888888888899988887555556778899999999988873 22 2444 222 255788899999999999853
No 121
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=66.27 E-value=1.3e+02 Score=28.94 Aligned_cols=41 Identities=27% Similarity=0.352 Sum_probs=32.7
Q ss_pred HHHHHHHcCCCCCCccc-ccCCCChHHHHHHHHcCCcEEecc
Q 015981 227 SLLNAVTDNLPKDWPRM-ICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 227 ~~v~~~~~~Lp~~kpr~-l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
+.-....+.+|.+..+. -.|+.+|.++..+-..|+|-|=.-
T Consensus 195 ~~t~~la~~~p~~~~~IsESGI~~~~dv~~l~~~ga~a~LVG 236 (254)
T COG0134 195 ETTEKLAPLIPKDVILISESGISTPEDVRRLAKAGADAFLVG 236 (254)
T ss_pred HHHHHHHhhCCCCcEEEecCCCCCHHHHHHHHHcCCCEEEec
Confidence 34456667889887776 469999999999999999987544
No 122
>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]
Probab=66.04 E-value=31 Score=32.54 Aligned_cols=83 Identities=16% Similarity=0.205 Sum_probs=62.2
Q ss_pred EeecCCCCHHHHHHHHHHHHhcCCceEEEcCc-cCCCchhhHHHHHHHHHcCCCCCCc-cccc-CCC-ChHHHHHHHHcC
Q 015981 185 GSIVGGSNIEERKRCAQEVAVRNVSGYWIGGF-GLGESMEERPSLLNAVTDNLPKDWP-RMIC-GLG-LPEEVLQGVAAG 260 (397)
Q Consensus 185 ~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl-~~ge~~~~~~~~v~~~~~~Lp~~kp-r~l~-G~g-~P~~il~~v~~G 260 (397)
.+.+|...+....+-++.+-++|.--+.+|-. +.| .+-.+.+++++++..+|.++. .|.+ --| ...+||..+.+|
T Consensus 160 CPyeG~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvG-Tpgtm~~ML~~Vmk~vPa~~LAVH~HDTYGQALaNiL~slqmG 238 (316)
T KOG2368|consen 160 CPYEGAVQPSKVAEVVKKLYEMGCYEISLGDTIGVG-TPGTMKRMLDAVMKVVPAEKLAVHCHDTYGQALANILVSLQMG 238 (316)
T ss_pred CCccCCcCHHHHHHHHHHHHhCCcEEEecccccccC-CchhHHHHHHHHHHhCCHHHhhhhhhhhHHHHHHHHHHHHHhc
Confidence 56788888988888999998888654544432 123 345678999999999999876 3444 223 367899999999
Q ss_pred CcEEecch
Q 015981 261 VDLFDSAY 268 (397)
Q Consensus 261 vD~FD~~~ 268 (397)
|.+.||+.
T Consensus 239 i~vvDSsv 246 (316)
T KOG2368|consen 239 IRVVDSSV 246 (316)
T ss_pred ceehhhhc
Confidence 99999985
No 123
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=65.87 E-value=9.6 Score=32.50 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=36.7
Q ss_pred CCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015981 320 VEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRR 387 (397)
Q Consensus 320 ~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~~~~ 387 (397)
...=-|+.|+|-+=+ ..+- ..=..+-..||+.|.+|.=++-+..|+..|+
T Consensus 38 ~~~LRC~vCqnqsia------dSna------------~iA~dmR~~Vr~~i~~G~sd~eI~~~~v~RY 87 (126)
T PRK10144 38 ASQLRCPQCQNQNLL------ESNA------------PVAVSMRHQVYSMVAEGKSEVEIIGWMTERY 87 (126)
T ss_pred HHcCCCCCCCCCChh------hcCC------------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 344469999998854 2222 2334556789999999999999999998886
No 124
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=65.30 E-value=44 Score=31.33 Aligned_cols=80 Identities=13% Similarity=0.200 Sum_probs=54.8
Q ss_pred CeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCC---hHHHHHHHH
Q 015981 182 AVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGL---PEEVLQGVA 258 (397)
Q Consensus 182 ~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~---P~~il~~v~ 258 (397)
.+++||-+- +.+.=.+.++.+.+-|+.-+-|-= . . +.-.+.++......+..-|..+.|+|+ +++.-.+++
T Consensus 16 ~vi~Vvr~~-~~~~a~~~~~al~~gGi~~iEiT~-~-t---p~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~ 89 (222)
T PRK07114 16 GMVPVFYHA-DVEVAKKVIKACYDGGARVFEFTN-R-G---DFAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQ 89 (222)
T ss_pred CEEEEEEcC-CHHHHHHHHHHHHHCCCCEEEEeC-C-C---CcHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHH
Confidence 499999864 555555667777777777666631 1 1 122344444444555555778889995 899999999
Q ss_pred cCCcEEecc
Q 015981 259 AGVDLFDSA 267 (397)
Q Consensus 259 ~GvD~FD~~ 267 (397)
.|.+.+-|+
T Consensus 90 aGA~FiVsP 98 (222)
T PRK07114 90 LGANFIVTP 98 (222)
T ss_pred cCCCEEECC
Confidence 999999887
No 125
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]
Probab=64.97 E-value=12 Score=41.27 Aligned_cols=78 Identities=21% Similarity=0.167 Sum_probs=58.7
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCccccc---CCC-ChHHHHHHHHcCCcEEec
Q 015981 191 SNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMIC---GLG-LPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 191 ~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~---G~g-~P~~il~~v~~GvD~FD~ 266 (397)
++.+.-...|+++.+.|..-++|--+..--.+..-..++.+..+.. +.|.|++ ..| .....+.|+..|+|++|.
T Consensus 691 Y~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~--dlPIHlHTHDTsG~~~at~~aA~~AGvDivD~ 768 (1149)
T COG1038 691 YTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV--DLPIHLHTHDTSGNGVATYLAAVEAGVDIVDV 768 (1149)
T ss_pred ccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc--CCceEEeccCCCccHHHHHHHHHHcCCchhhh
Confidence 4567777889999999888888765554344555577888888776 7898876 223 477889999999999998
Q ss_pred chhH
Q 015981 267 AYIY 270 (397)
Q Consensus 267 ~~p~ 270 (397)
+...
T Consensus 769 A~~s 772 (1149)
T COG1038 769 AMAS 772 (1149)
T ss_pred hhhh
Confidence 8643
No 126
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=64.90 E-value=26 Score=32.10 Aligned_cols=81 Identities=11% Similarity=0.191 Sum_probs=52.3
Q ss_pred CeEEeecCCCC-HHH----HHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHH
Q 015981 182 AVFGSIVGGSN-IEE----RKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQ 255 (397)
Q Consensus 182 ~lf~~iqGg~~-~~l----R~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~ 255 (397)
+++|++--.+. .+. -.+.++++.+.|.+-.++.+-...-+ +...+++..+.+.. +.+| -+++.++...
T Consensus 34 PIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDaT~R~Rp-~~l~~li~~i~~~~-----~l~MADist~ee~~~ 107 (192)
T PF04131_consen 34 PIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDATDRPRP-ETLEELIREIKEKY-----QLVMADISTLEEAIN 107 (192)
T ss_dssp -EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-SSSS-S-S-HHHHHHHHHHCT-----SEEEEE-SSHHHHHH
T ss_pred CEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEecCCCCCC-cCHHHHHHHHHHhC-----cEEeeecCCHHHHHH
Confidence 47777753211 111 12457788899999999998765444 66788888888765 4455 7899999999
Q ss_pred HHHcCCcEEecch
Q 015981 256 GVAAGVDLFDSAY 268 (397)
Q Consensus 256 ~v~~GvD~FD~~~ 268 (397)
+.++|+|++=++.
T Consensus 108 A~~~G~D~I~TTL 120 (192)
T PF04131_consen 108 AAELGFDIIGTTL 120 (192)
T ss_dssp HHHTT-SEEE-TT
T ss_pred HHHcCCCEEEccc
Confidence 9999999998774
No 127
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=64.62 E-value=1e+02 Score=28.26 Aligned_cols=65 Identities=12% Similarity=0.114 Sum_probs=40.5
Q ss_pred HHHHhcCCceEEEc--CccCCC--chhhHHHHHHHHHcCCCCCCcccc-cCCCChHHHHHHHHcCCcEEecc
Q 015981 201 QEVAVRNVSGYWIG--GFGLGE--SMEERPSLLNAVTDNLPKDWPRMI-CGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 201 ~~l~~~~~~G~~Ig--Gl~~ge--~~~~~~~~v~~~~~~Lp~~kpr~l-~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
+.+.+.+++.+.++ |+.... ......+.++.+.+.+ +.|... .|+.+|.++..+.+.|+|.+=..
T Consensus 133 ~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~--~iPvia~GGI~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 133 LAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV--GCPVIAEGRINTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred HHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC--CCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 34556778776553 221110 1111245566666655 477764 58899999999999999976544
No 128
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=64.45 E-value=67 Score=31.96 Aligned_cols=64 Identities=23% Similarity=0.293 Sum_probs=46.9
Q ss_pred HHHHHhcCC--ceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccC-CCChHHHHHHHHcCCcEEecc
Q 015981 200 AQEVAVRNV--SGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICG-LGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 200 a~~l~~~~~--~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G-~g~P~~il~~v~~GvD~FD~~ 267 (397)
+.++.+.++ +.++|..-. |.+ +...++|+++.+..|. .|. +.| ++++++...++.+|+|.++..
T Consensus 102 ~~~Lv~ag~~~d~i~iD~a~-gh~-~~~~e~I~~ir~~~p~-~~v-i~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 102 VDQLAAEGLTPEYITIDIAH-GHS-DSVINMIQHIKKHLPE-TFV-IAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHhcCCCCCEEEEECCC-Cch-HHHHHHHHHHHhhCCC-CeE-EEEecCCHHHHHHHHHcCcCEEEEC
Confidence 456666644 889887544 332 4456778888888763 553 445 999999999999999999844
No 129
>PF12167 DUF3596: Domain of unknown function (DUF3596); InterPro: IPR022000 This N-terminal domain is found in Bacteriophage P27p02, it is functionally uncharacterised, though it is considered to be an integrase. Integrase is necessary for integration of the phage into the host genome by site-specific recombination. In conjunction with excisionase, integrase is also necessary for excision of the prophage from the host genome. This domain is found in related proteins in other bacteriophage, and prophage regions of bacterial genomes. The domain is approximately 90 amino acids in length and is found is associated with the C-terminal domain characterised by PF00589 from PFAM.
Probab=63.12 E-value=8.5 Score=28.69 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 015981 352 EIHNTHHYLGFFRSIREAIKEGCFEQFQKKF 382 (397)
Q Consensus 352 ~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f 382 (397)
+-.|.....++.++|...|..|+|+ |.+.|
T Consensus 31 T~~N~k~a~~~~~~I~~~I~~G~Fd-y~~~F 60 (64)
T PF12167_consen 31 TPANRKKAERLRAEIEAEIALGTFD-YAKYF 60 (64)
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCc-HHHhC
Confidence 4459999999999999999999998 66654
No 130
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=62.97 E-value=98 Score=28.33 Aligned_cols=118 Identities=14% Similarity=0.050 Sum_probs=70.4
Q ss_pred eecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHH
Q 015981 124 RLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEV 203 (397)
Q Consensus 124 ~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l 203 (397)
...+|.++.+.....|+|.+-..+++.......+ ..+.+.+.. +-++. +.|+.-.. .-++.+
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~-~~~~i~~~v------------~iPi~--~~~~i~~~---~~v~~~ 90 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLE-DLRAVREAV------------SLPVL--RKDFIIDP---YQIYEA 90 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHH-HHHHHHHhc------------CCCEE--ECCeecCH---HHHHHH
Confidence 4578999999999999999988766554432332 222222111 11111 12222222 136677
Q ss_pred HhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEe
Q 015981 204 AVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFD 265 (397)
Q Consensus 204 ~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD 265 (397)
.+.|++|+.++..... .++..++++.... +. .-.+..+.++.++..+..+|+|.+=
T Consensus 91 ~~~Gad~v~l~~~~~~--~~~~~~~~~~~~~-~g---~~~~v~v~~~~e~~~~~~~g~~~i~ 146 (217)
T cd00331 91 RAAGADAVLLIVAALD--DEQLKELYELARE-LG---MEVLVEVHDEEELERALALGAKIIG 146 (217)
T ss_pred HHcCCCEEEEeeccCC--HHHHHHHHHHHHH-cC---CeEEEEECCHHHHHHHHHcCCCEEE
Confidence 7889999999875433 2455666655432 11 1113455689999999999999884
No 131
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=62.82 E-value=19 Score=34.66 Aligned_cols=61 Identities=16% Similarity=0.062 Sum_probs=45.3
Q ss_pred HHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHH
Q 015981 203 VAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYH 271 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~ 271 (397)
..+.+++.+.+|.+. +++ ++++.+.++.+.|....|=-++.++......|+|.+-...+|.
T Consensus 198 A~~~gaDyI~ld~~~----~e~----l~~~~~~~~~~ipi~AiGGI~~~ni~~~a~~Gvd~Iav~sl~~ 258 (268)
T cd01572 198 ALEAGADIIMLDNMS----PEE----LREAVALLKGRVLLEASGGITLENIRAYAETGVDYISVGALTH 258 (268)
T ss_pred HHHcCCCEEEECCcC----HHH----HHHHHHHcCCCCcEEEECCCCHHHHHHHHHcCCCEEEEEeeec
Confidence 345788899888654 333 4444445554677777777799999999999999999998764
No 132
>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain. Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong
Probab=62.71 E-value=77 Score=30.83 Aligned_cols=77 Identities=9% Similarity=-0.058 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHhc---CCc---eEEEcCccCCCchhhHHHHHHHHHcCCCCC--Cc--cccc-CCC-ChHHHHHHHH
Q 015981 191 SNIEERKRCAQEVAVR---NVS---GYWIGGFGLGESMEERPSLLNAVTDNLPKD--WP--RMIC-GLG-LPEEVLQGVA 258 (397)
Q Consensus 191 ~~~~lR~~sa~~l~~~---~~~---G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~--kp--r~l~-G~g-~P~~il~~v~ 258 (397)
.+.+...+.++.+.+. +.+ -+.+.-......+.+..++++.+.+.+|.. .| .|.+ -.| .-.+.+.|+.
T Consensus 153 ~~~~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~ 232 (284)
T cd07942 153 TELDFALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALL 232 (284)
T ss_pred CCHHHHHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHH
Confidence 6677777777776554 333 344433222346677888998888888752 23 3554 223 3677899999
Q ss_pred cCCcEEecc
Q 015981 259 AGVDLFDSA 267 (397)
Q Consensus 259 ~GvD~FD~~ 267 (397)
.|++.||++
T Consensus 233 aG~~~id~~ 241 (284)
T cd07942 233 AGADRVEGT 241 (284)
T ss_pred hCCCEEEee
Confidence 999999977
No 133
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=60.68 E-value=97 Score=31.02 Aligned_cols=68 Identities=18% Similarity=0.190 Sum_probs=43.2
Q ss_pred HHHHHHHhcCCceEEEcCccC----------CCchhhHHHHHHHHHcCCCC-CCccccc-CCCChHHHHHHHHcCCcEEe
Q 015981 198 RCAQEVAVRNVSGYWIGGFGL----------GESMEERPSLLNAVTDNLPK-DWPRMIC-GLGLPEEVLQGVAAGVDLFD 265 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~----------ge~~~~~~~~v~~~~~~Lp~-~kpr~l~-G~g~P~~il~~v~~GvD~FD 265 (397)
+-++++.+.|++|+.+| ++. |-...+ ...|.++.+..-. +.|.+.- |+-++-||+.|+++|.|..=
T Consensus 162 e~a~~Li~aGAD~ikVg-iGpGSicttR~~~Gvg~pq-ltAv~~~a~aa~~~~v~VIaDGGIr~~gDI~KALA~GAd~VM 239 (343)
T TIGR01305 162 EMVEELILSGADIVKVG-IGPGSVCTTRTKTGVGYPQ-LSAVIECADAAHGLKGHIISDGGCTCPGDVAKAFGAGADFVM 239 (343)
T ss_pred HHHHHHHHcCCCEEEEc-ccCCCcccCceeCCCCcCH-HHHHHHHHHHhccCCCeEEEcCCcCchhHHHHHHHcCCCEEE
Confidence 45667788899998876 121 111122 3344444444433 5666554 88999999999999999544
Q ss_pred cc
Q 015981 266 SA 267 (397)
Q Consensus 266 ~~ 267 (397)
.-
T Consensus 240 lG 241 (343)
T TIGR01305 240 LG 241 (343)
T ss_pred EC
Confidence 33
No 134
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=60.53 E-value=34 Score=32.53 Aligned_cols=89 Identities=16% Similarity=0.174 Sum_probs=58.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCCCC-eEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHH
Q 015981 155 NNKRNKTSVDRTVKWLDECIARSPAGGA-VFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVT 233 (397)
Q Consensus 155 ~~kr~~~sverT~~w~~~~l~~~~~~~~-lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~ 233 (397)
+.-+..+..+-+..|..+..+...+.+. .|..+. + .++++.+.+.+++.|=|+..... ...+|+.+.
T Consensus 43 ~~~~~~~~~el~~e~~~~L~~~~~~~gi~f~stpf---d----~~s~d~l~~~~~~~~KIaS~dl~-----n~~lL~~~A 110 (241)
T PF03102_consen 43 SYYELFKKLELSEEQHKELFEYCKELGIDFFSTPF---D----EESVDFLEELGVPAYKIASGDLT-----NLPLLEYIA 110 (241)
T ss_dssp THHHHHHHHSS-HHHHHHHHHHHHHTT-EEEEEE----S----HHHHHHHHHHT-SEEEE-GGGTT------HHHHHHHH
T ss_pred cHHHHHHHhcCCHHHHHHHHHHHHHcCCEEEECCC---C----HHHHHHHHHcCCCEEEecccccc-----CHHHHHHHH
Confidence 4567788889999999988876554455 556664 2 46788888889999999854432 246777776
Q ss_pred cCCCCCCccccc-CCCChHHHHHHHH
Q 015981 234 DNLPKDWPRMIC-GLGLPEEVLQGVA 258 (397)
Q Consensus 234 ~~Lp~~kpr~l~-G~g~P~~il~~v~ 258 (397)
. .+||.+|. |.++..+|-.+|.
T Consensus 111 ~---tgkPvIlSTG~stl~EI~~Av~ 133 (241)
T PF03102_consen 111 K---TGKPVILSTGMSTLEEIERAVE 133 (241)
T ss_dssp T---T-S-EEEE-TT--HHHHHHHHH
T ss_pred H---hCCcEEEECCCCCHHHHHHHHH
Confidence 6 58998875 9999999998874
No 135
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=60.38 E-value=28 Score=33.84 Aligned_cols=63 Identities=8% Similarity=-0.042 Sum_probs=45.4
Q ss_pred HHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhh
Q 015981 203 VAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLT 273 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a 273 (397)
..+.+++.+.++-+ +++++.++++. ++.+.|....|=-++.++......|||.+-..++|..+
T Consensus 205 A~~~gaD~I~LD~~----~~e~l~~~v~~----~~~~i~leAsGGIt~~ni~~~a~tGvD~Isvg~lt~s~ 267 (277)
T PRK05742 205 ALAAGADIVMLDEL----SLDDMREAVRL----TAGRAKLEASGGINESTLRVIAETGVDYISIGAMTKDV 267 (277)
T ss_pred HHHcCCCEEEECCC----CHHHHHHHHHH----hCCCCcEEEECCCCHHHHHHHHHcCCCEEEEChhhcCC
Confidence 34567888877633 34555555543 33466777787669999999999999999999887544
No 136
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=60.27 E-value=32 Score=36.05 Aligned_cols=63 Identities=21% Similarity=0.126 Sum_probs=50.7
Q ss_pred HHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccC-CCChHHHHHHHHcCCcEEe
Q 015981 199 CAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICG-LGLPEEVLQGVAAGVDLFD 265 (397)
Q Consensus 199 sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G-~g~P~~il~~v~~GvD~FD 265 (397)
-++.|.+.+++-++|..-+ |.+ +...++++++.+..| +.|.+. | +.+++....++..|+|.++
T Consensus 229 ra~~Lv~aGVd~i~~D~a~-g~~-~~~~~~i~~i~~~~~-~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 229 KAKALLDAGVDVLVIDTAH-GHQ-VKMISAIKAVRALDL-GVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred HHHHHHHhCCCEEEEeCCC-CCc-HHHHHHHHHHHHHCC-CCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 3556777899999998755 655 556788888888776 577644 7 8899999999999999999
No 137
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=60.14 E-value=97 Score=30.78 Aligned_cols=80 Identities=25% Similarity=0.291 Sum_probs=51.7
Q ss_pred eEEeecCCCCHHHHHHHHHHHHhcC--CceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccC-CCChHHHHHHHHc
Q 015981 183 VFGSIVGGSNIEERKRCAQEVAVRN--VSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICG-LGLPEEVLQGVAA 259 (397)
Q Consensus 183 lf~~iqGg~~~~lR~~sa~~l~~~~--~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G-~g~P~~il~~v~~ 259 (397)
+++.+-=|...+-.++. ..+.+.+ .+-+.+. .+.|.+ ....+.|+++.+.+| .|-.+-| ++++.+...+++.
T Consensus 83 L~v~~SvG~t~e~~~r~-~~lv~a~~~~d~i~~D-~ahg~s-~~~~~~i~~i~~~~p--~~~vi~GnV~t~e~a~~l~~a 157 (321)
T TIGR01306 83 LFASISVGVKACEYEFV-TQLAEEALTPEYITID-IAHGHS-NSVINMIKHIKTHLP--DSFVIAGNVGTPEAVRELENA 157 (321)
T ss_pred cEEEEEcCCCHHHHHHH-HHHHhcCCCCCEEEEe-CccCch-HHHHHHHHHHHHhCC--CCEEEEecCCCHHHHHHHHHc
Confidence 34444333444433333 3444545 4666665 334555 345678888888886 3655667 9999999999999
Q ss_pred CCcEEecc
Q 015981 260 GVDLFDSA 267 (397)
Q Consensus 260 GvD~FD~~ 267 (397)
|+|.++..
T Consensus 158 Gad~I~V~ 165 (321)
T TIGR01306 158 GADATKVG 165 (321)
T ss_pred CcCEEEEC
Confidence 99999855
No 138
>PLN02321 2-isopropylmalate synthase
Probab=59.05 E-value=72 Score=34.72 Aligned_cols=87 Identities=21% Similarity=0.073 Sum_probs=64.0
Q ss_pred eEEeec-CCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCC--Cc--cccc-CCC-ChHHHHH
Q 015981 183 VFGSIV-GGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKD--WP--RMIC-GLG-LPEEVLQ 255 (397)
Q Consensus 183 lf~~iq-Gg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~--kp--r~l~-G~g-~P~~il~ 255 (397)
.|++-- |-.+.+.-.+.++.+.+.|.+-+.|.-....-.+.++.++++.+.+.+|.. .+ .|.+ -.| .-...+.
T Consensus 228 ~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANsla 307 (632)
T PLN02321 228 EFSPEDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLA 307 (632)
T ss_pred EEecccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHH
Confidence 455543 336788888889999999998888876655567788999999999888853 23 2443 122 2457788
Q ss_pred HHHcCCcEEecchh
Q 015981 256 GVAAGVDLFDSAYI 269 (397)
Q Consensus 256 ~v~~GvD~FD~~~p 269 (397)
++..|+|.||++.-
T Consensus 308 Av~AGA~~Vd~Tin 321 (632)
T PLN02321 308 GAHAGARQVEVTIN 321 (632)
T ss_pred HHHhCCCEEEEecc
Confidence 99999999999953
No 139
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=58.73 E-value=1.9e+02 Score=28.49 Aligned_cols=84 Identities=18% Similarity=0.066 Sum_probs=51.2
Q ss_pred eEEeecCCCCHH--HHHHHHHHHHhcCCceEEEcCccCCC--chhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHH
Q 015981 183 VFGSIVGGSNIE--ERKRCAQEVAVRNVSGYWIGGFGLGE--SMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGV 257 (397)
Q Consensus 183 lf~~iqGg~~~~--lR~~sa~~l~~~~~~G~~IgGl~~ge--~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v 257 (397)
+..-+-.|++.+ --.+.++.+.+.|++.+.+.|-.... +....++.+..+.+.+ +.|.+.. |+.+|.++..++
T Consensus 136 v~vKiR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~~~~i~~ik~~~--~iPVI~nGgI~s~~da~~~l 213 (321)
T PRK10415 136 VTLKIRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAEYDSIRAVKQKV--SIPVIANGDITDPLKARAVL 213 (321)
T ss_pred eEEEEEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcChHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHH
Confidence 333343455432 12345666777899999887754110 0011245666666654 3676655 777999999999
Q ss_pred H-cCCcEEecch
Q 015981 258 A-AGVDLFDSAY 268 (397)
Q Consensus 258 ~-~GvD~FD~~~ 268 (397)
+ .|+|.+=..-
T Consensus 214 ~~~gadgVmiGR 225 (321)
T PRK10415 214 DYTGADALMIGR 225 (321)
T ss_pred hccCCCEEEECh
Confidence 7 6999776553
No 140
>PRK08610 fructose-bisphosphate aldolase; Reviewed
Probab=58.54 E-value=1.1e+02 Score=29.85 Aligned_cols=131 Identities=13% Similarity=0.127 Sum_probs=69.4
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCH--------HHHHH
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNI--------EERKR 198 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~--------~lR~~ 198 (397)
+.|..++..+ .|.+-+|. |.-.. ..+.-+++|.+..+.+-...-.-..=+|.|-|..+. ---.+
T Consensus 89 ~~e~i~~ai~-~GftSVM~--DgS~l-----~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~pee 160 (286)
T PRK08610 89 SFEKCKEAID-AGFTSVMI--DASHS-----PFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKE 160 (286)
T ss_pred CHHHHHHHHH-cCCCEEEE--eCCCC-----CHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHH
Confidence 4566655444 46666665 32211 245566666666665543211001135555433211 01234
Q ss_pred HHHHHHhcCCceEEEc--CccC--CCchhhHHHHHHHHHcCCCCCCcccccCC-CCh-HHHHHHHHcCCcEEecc
Q 015981 199 CAQEVAVRNVSGYWIG--GFGL--GESMEERPSLLNAVTDNLPKDWPRMICGL-GLP-EEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 199 sa~~l~~~~~~G~~Ig--Gl~~--ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~-g~P-~~il~~v~~GvD~FD~~ 267 (397)
+.+++.+.+++-+++. -.+. ...+.-..+.++.+.+.+ +.|..|+|- |.| +++-.++.+||-=+-..
T Consensus 161 a~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~ 233 (286)
T PRK08610 161 CQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST--GLPLVLHGGTGIPTKDIQKAIPFGTAKINVN 233 (286)
T ss_pred HHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEec
Confidence 5566666788876653 2221 011222356676666665 578889855 666 56666899998655443
No 141
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=58.43 E-value=1e+02 Score=26.55 Aligned_cols=22 Identities=14% Similarity=0.137 Sum_probs=19.4
Q ss_pred eecChhhHHHHHHhcCCcEEEE
Q 015981 124 RLIKPVEYMEMITSMKPNLWAT 145 (397)
Q Consensus 124 ~~ltpe~~~~~q~~i~pDi~~~ 145 (397)
...+||++++....-+||++..
T Consensus 37 ~~v~~e~~v~aa~~~~adiVgl 58 (134)
T TIGR01501 37 VLSPQEEFIKAAIETKADAILV 58 (134)
T ss_pred CCCCHHHHHHHHHHcCCCEEEE
Confidence 4579999999999999999865
No 142
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=58.26 E-value=61 Score=31.25 Aligned_cols=83 Identities=13% Similarity=0.203 Sum_probs=48.1
Q ss_pred ecChhhHHHHHHhcCCcEEEEcCCCCCCC----CCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCH--HHHHH
Q 015981 125 LIKPVEYMEMITSMKPNLWATLADEVPAW----ANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNI--EERKR 198 (397)
Q Consensus 125 ~ltpe~~~~~q~~i~pDi~~~L~d~~~~~----~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~--~lR~~ 198 (397)
.+++|+..++. .-|+||+++---.+... .+...++.+++++.+|++.+.+..+ .++-..+||--. +--+.
T Consensus 157 vf~~e~A~~M~-~AGaDiiv~H~GlT~gG~~Ga~~~~sl~~a~~~~~~i~~aa~~v~~---dii~l~hGGPI~~p~D~~~ 232 (268)
T PF09370_consen 157 VFNEEQARAMA-EAGADIIVAHMGLTTGGSIGAKTALSLEEAAERIQEIFDAARAVNP---DIIVLCHGGPIATPEDAQY 232 (268)
T ss_dssp E-SHHHHHHHH-HHT-SEEEEE-SS----------S--HHHHHHHHHHHHHHHHCC-T---T-EEEEECTTB-SHHHHHH
T ss_pred ecCHHHHHHHH-HcCCCEEEecCCccCCCCcCccccCCHHHHHHHHHHHHHHHHHhCC---CeEEEEeCCCCCCHHHHHH
Confidence 56888888877 88999998753333221 2345788999999999998865432 377788888542 22222
Q ss_pred HHHHHHh-cCCceEEEcC
Q 015981 199 CAQEVAV-RNVSGYWIGG 215 (397)
Q Consensus 199 sa~~l~~-~~~~G~~IgG 215 (397)
. +.. .+++|| +||
T Consensus 233 ~---l~~t~~~~Gf-~G~ 246 (268)
T PF09370_consen 233 V---LRNTKGIHGF-IGA 246 (268)
T ss_dssp H---HHH-TTEEEE-EES
T ss_pred H---HhcCCCCCEE-ecc
Confidence 2 222 348899 665
No 143
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=57.65 E-value=38 Score=35.80 Aligned_cols=78 Identities=14% Similarity=0.210 Sum_probs=53.9
Q ss_pred eEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCc
Q 015981 183 VFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVD 262 (397)
Q Consensus 183 lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD 262 (397)
+.|.-.|-...+ .+-++.|.+.+++-++|.. ..|.+. ..++.|+++.+..| +.+.+.=++.++.+...++++|+|
T Consensus 238 ~vgaavg~~~~~--~~r~~~l~~ag~d~i~iD~-~~g~~~-~~~~~i~~ik~~~p-~~~vi~g~v~t~e~a~~a~~aGaD 312 (505)
T PLN02274 238 LVGAAIGTRESD--KERLEHLVKAGVDVVVLDS-SQGDSI-YQLEMIKYIKKTYP-ELDVIGGNVVTMYQAQNLIQAGVD 312 (505)
T ss_pred EEEEEEcCCccH--HHHHHHHHHcCCCEEEEeC-CCCCcH-HHHHHHHHHHHhCC-CCcEEEecCCCHHHHHHHHHcCcC
Confidence 555544432221 2335677788999999986 346553 34678888888877 344333369999999999999999
Q ss_pred EEe
Q 015981 263 LFD 265 (397)
Q Consensus 263 ~FD 265 (397)
.+=
T Consensus 313 ~i~ 315 (505)
T PLN02274 313 GLR 315 (505)
T ss_pred EEE
Confidence 983
No 144
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=57.53 E-value=1.7e+02 Score=28.87 Aligned_cols=135 Identities=15% Similarity=0.051 Sum_probs=76.6
Q ss_pred cChhhHHHHHHhcC-CcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh--CCCCCCeEEeecCCCCHHHHHHHHHH
Q 015981 126 IKPVEYMEMITSMK-PNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIAR--SPAGGAVFGSIVGGSNIEERKRCAQE 202 (397)
Q Consensus 126 ltpe~~~~~q~~i~-pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~--~~~~~~lf~~iqGg~~~~lR~~sa~~ 202 (397)
+|..-+..+...+| +|.++.- -+... +... .-+ +.+++.+-+.. .......+++-.+|.+++.-.++|+.
T Consensus 11 ~td~~fR~l~~~~g~~~~~~te--mvs~~-~~~~---~~~-~~~~~~~~~~~~~~~~~e~p~~vQl~g~~p~~~~~aA~~ 83 (312)
T PRK10550 11 VLDSLVRELLTEVNDYDLCITE--FLRVV-DQLL---PVK-VFHRLCPELHNASRTPSGTLVRIQLLGQYPQWLAENAAR 83 (312)
T ss_pred CcCHHHHHHHHHhCCCCEEEeC--CEEec-hhcc---cch-hHHHHhHHhcccCCCCCCCcEEEEeccCCHHHHHHHHHH
Confidence 56677888888888 7887652 22111 0000 101 11122222220 11112334444456788888888888
Q ss_pred HHhcCCceEEEcCcc---------CC----CchhhHHHHHHHHHcCCCCCCcccc---cCCCC---hHHHHHHH-HcCCc
Q 015981 203 VAVRNVSGYWIGGFG---------LG----ESMEERPSLLNAVTDNLPKDWPRMI---CGLGL---PEEVLQGV-AAGVD 262 (397)
Q Consensus 203 l~~~~~~G~~IgGl~---------~g----e~~~~~~~~v~~~~~~Lp~~kpr~l---~G~g~---P~~il~~v-~~GvD 262 (397)
+.+.+++++-|-.=. .| ..++...++++++.+.+|.+.|.-+ .|.-. ..+++..+ +.|+|
T Consensus 84 ~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR~g~~~~~~~~~~a~~l~~~Gvd 163 (312)
T PRK10550 84 AVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVRLGWDSGERKFEIADAVQQAGAT 163 (312)
T ss_pred HHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEECCCCCchHHHHHHHHHHhcCCC
Confidence 888888877653111 12 3455668888888888887788543 24322 23454544 69999
Q ss_pred EEecc
Q 015981 263 LFDSA 267 (397)
Q Consensus 263 ~FD~~ 267 (397)
.+...
T Consensus 164 ~i~Vh 168 (312)
T PRK10550 164 ELVVH 168 (312)
T ss_pred EEEEC
Confidence 99875
No 145
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=57.17 E-value=53 Score=32.74 Aligned_cols=87 Identities=14% Similarity=0.121 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCC-eEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcC
Q 015981 157 KRNKTSVDRTVKWLDECIARSPAGGA-VFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDN 235 (397)
Q Consensus 157 kr~~~sverT~~w~~~~l~~~~~~~~-lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~ 235 (397)
-..-+..+-+.+|.++..+...+.+. .|..+- + ..+++.+.+.+++.|-||.....+ ..+|+.+...
T Consensus 65 ~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~stpf---d----~~svd~l~~~~v~~~KIaS~~~~n-----~pLL~~~A~~ 132 (329)
T TIGR03569 65 LEMLKKLELSEEDHRELKEYCESKGIEFLSTPF---D----LESADFLEDLGVPRFKIPSGEITN-----APLLKKIARF 132 (329)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCcEEEEeC---C----HHHHHHHHhcCCCEEEECcccccC-----HHHHHHHHhc
Confidence 34555677778888887776554454 555553 3 457788888999999998644322 4677766653
Q ss_pred CCCCCccccc-CCCChHHHHHHHH
Q 015981 236 LPKDWPRMIC-GLGLPEEVLQGVA 258 (397)
Q Consensus 236 Lp~~kpr~l~-G~g~P~~il~~v~ 258 (397)
.||.+|. |.++..+|..+|+
T Consensus 133 ---gkPvilStGmatl~Ei~~Av~ 153 (329)
T TIGR03569 133 ---GKPVILSTGMATLEEIEAAVG 153 (329)
T ss_pred ---CCcEEEECCCCCHHHHHHHHH
Confidence 8998875 9999999999984
No 146
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=56.86 E-value=1.1e+02 Score=31.24 Aligned_cols=82 Identities=22% Similarity=0.183 Sum_probs=53.2
Q ss_pred CeEEeecCCCCHHHHHHHHHHHHhcCCceEEEc------------CccCCCchhhHHHHHHHHHcCCCCCCcccc---cC
Q 015981 182 AVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIG------------GFGLGESMEERPSLLNAVTDNLPKDWPRMI---CG 246 (397)
Q Consensus 182 ~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~Ig------------Gl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l---~G 246 (397)
.+++.|.|..+.+.-.+.++.+.+.+++++-|- |-..+.+++...++++++.+.. ++|..+ ..
T Consensus 101 p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~--~~Pv~vKl~p~ 178 (420)
T PRK08318 101 ALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGS--RLPVIVKLTPN 178 (420)
T ss_pred eEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhcc--CCcEEEEcCCC
Confidence 467777776466666677888777777776651 1223456667788888887764 467543 34
Q ss_pred CCChHHHHHH-HHcCCcEEe
Q 015981 247 LGLPEEVLQG-VAAGVDLFD 265 (397)
Q Consensus 247 ~g~P~~il~~-v~~GvD~FD 265 (397)
.....+|..+ .+.|+|-+-
T Consensus 179 ~~~~~~~a~~~~~~Gadgi~ 198 (420)
T PRK08318 179 ITDIREPARAAKRGGADAVS 198 (420)
T ss_pred cccHHHHHHHHHHCCCCEEE
Confidence 4456677774 578999765
No 147
>TIGR00167 cbbA ketose-bisphosphate aldolases. fructose-bisphosphate and tagatose-bisphosphate aldolase.
Probab=56.78 E-value=1.6e+02 Score=28.83 Aligned_cols=131 Identities=14% Similarity=0.143 Sum_probs=73.8
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCH----HH------H
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNI----EE------R 196 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~----~l------R 196 (397)
+.+.+++..+ .|.+-+|. |.-.. -.+.-+++|.+..+.+-...-.-..=+|.|-|+.+. +. -
T Consensus 89 ~~e~i~~ai~-~GftSVMi--DgS~l-----p~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~p 160 (288)
T TIGR00167 89 SEEDCAQAVK-AGFSSVMI--DGSHE-----PFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDP 160 (288)
T ss_pred CHHHHHHHHH-cCCCEEEe--cCCCC-----CHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCH
Confidence 5566666654 47777776 32211 245566667666665533210001145666444321 00 1
Q ss_pred HHHHHHHHhcCCceEEEc--CccCC--Cchh-hHHHHHHHHHcCCCCCCcccccCC-CCh-HHHHHHHHcCCcEEecc
Q 015981 197 KRCAQEVAVRNVSGYWIG--GFGLG--ESME-ERPSLLNAVTDNLPKDWPRMICGL-GLP-EEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~Ig--Gl~~g--e~~~-~~~~~v~~~~~~Lp~~kpr~l~G~-g~P-~~il~~v~~GvD~FD~~ 267 (397)
.++.+++.+.+++-+++. -.+.. ..+. -..++++.+.+.+ +.|..++|- |.| +++-.+|..||-=+-..
T Consensus 161 eea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 236 (288)
T TIGR00167 161 EEAKEFVKLTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYV--NLPLVLHGGSGIPDEEIKKAISLGVVKVNID 236 (288)
T ss_pred HHHHHHHhccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcC
Confidence 456666667788877653 22211 1122 3467777777776 579889965 566 57778999998765544
No 148
>cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV. Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl
Probab=56.75 E-value=35 Score=34.50 Aligned_cols=82 Identities=20% Similarity=0.120 Sum_probs=59.9
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEcCccCCC----chhhHHHHHHHHHcCCC---CCCcccccCC-CChHHHHH----
Q 015981 188 VGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGE----SMEERPSLLNAVTDNLP---KDWPRMICGL-GLPEEVLQ---- 255 (397)
Q Consensus 188 qGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge----~~~~~~~~v~~~~~~Lp---~~kpr~l~G~-g~P~~il~---- 255 (397)
++|.+.+.-.+.+.++.+-|++++...|. .|| +.+|+.+++..+++... ..++.|+.++ +...++.+
T Consensus 140 ~~gld~~~la~~~~~l~~gGvD~Ikdde~-~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~ 218 (367)
T cd08205 140 SIGLSPEELAELAYELALGGIDLIKDDEL-LADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADR 218 (367)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCeeecccc-ccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHH
Confidence 47899888888899999999999877664 333 45778888887776665 3667787777 56677754
Q ss_pred HHHcCCcEEecchhH
Q 015981 256 GVAAGVDLFDSAYIY 270 (397)
Q Consensus 256 ~v~~GvD~FD~~~p~ 270 (397)
+.+.|+|.+=...|+
T Consensus 219 a~~~Gad~vmv~~~~ 233 (367)
T cd08205 219 AVEAGANALLINPNL 233 (367)
T ss_pred HHHcCCCEEEEeccc
Confidence 467999966555443
No 149
>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family. This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.
Probab=56.33 E-value=1.7e+02 Score=28.56 Aligned_cols=131 Identities=15% Similarity=0.132 Sum_probs=69.0
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCH----HH------H
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNI----EE------R 196 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~----~l------R 196 (397)
+.|...+..+. |.+-+|. |.-.. + .+.-+++|.+..+.+-...-.-..=+|.|-|+.+. +. -
T Consensus 84 ~~e~i~~ai~~-GFtSVM~--DgS~l--p---~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~p 155 (282)
T TIGR01858 84 SLDDIRQKVHA-GVRSAMI--DGSHF--P---FAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDP 155 (282)
T ss_pred CHHHHHHHHHc-CCCEEee--cCCCC--C---HHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCH
Confidence 45555555554 7777765 32211 1 34455555555544432210001135556443221 11 1
Q ss_pred HHHHHHHHhcCCceEEEc--CccC--CCchhhHHHHHHHHHcCCCCCCcccccCC-CCh-HHHHHHHHcCCcEEecc
Q 015981 197 KRCAQEVAVRNVSGYWIG--GFGL--GESMEERPSLLNAVTDNLPKDWPRMICGL-GLP-EEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~Ig--Gl~~--ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~-g~P-~~il~~v~~GvD~FD~~ 267 (397)
.++.+++.+.++|-+++. -.+. ...+.--.++++.+.+.+ +.|..|+|- |.| +++..++.+||-=+-..
T Consensus 156 eea~~Fv~~TgvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~--~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 230 (282)
T TIGR01858 156 QEAKEFVEATGVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVV--DVPLVLHGASDVPDEDVRRTIELGICKVNVA 230 (282)
T ss_pred HHHHHHHHHHCcCEEecccCccccCcCCCCccCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 456666667788876653 2221 112233367777777776 579889865 444 56666888998655433
No 150
>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]
Probab=55.89 E-value=1.5e+02 Score=30.57 Aligned_cols=137 Identities=12% Similarity=0.071 Sum_probs=81.3
Q ss_pred HHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCC--eE-EeecCCCCHHHHHHHHHHHHhcC
Q 015981 131 YMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGA--VF-GSIVGGSNIEERKRCAQEVAVRN 207 (397)
Q Consensus 131 ~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~--lf-~~iqGg~~~~lR~~sa~~l~~~~ 207 (397)
-++.....+.|.+-.+ ..+....-+...+.+.+-.+.-+.+++++-...+. .+ +---...+++-..+.++.+.+.|
T Consensus 81 ~~ea~~~a~~~~i~if-~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~g 159 (409)
T COG0119 81 DIEALLEAGVDRIHIF-IATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAG 159 (409)
T ss_pred hHHHHHhCCCCEEEEE-EcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcC
Confidence 4555556666665444 22221111222333334444444444443222221 22 22223567788888888887777
Q ss_pred CceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc--ccc-CCC-ChHHHHHHHHcCCcEEecch
Q 015981 208 VSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR--MIC-GLG-LPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 208 ~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~-G~g-~P~~il~~v~~GvD~FD~~~ 268 (397)
..-+.+.-....-.+.+..++++++.+.+|+..|. |-+ -.| --...+.++..|+|.||++.
T Consensus 160 a~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~Tv 224 (409)
T COG0119 160 ADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEGTV 224 (409)
T ss_pred CcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEEEEec
Confidence 77777766555567788999999999999863332 333 223 25678899999999999985
No 151
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.79 E-value=36 Score=33.16 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=44.4
Q ss_pred HHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHh
Q 015981 203 VAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHL 272 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~ 272 (397)
..+.+++.+.+.-+ ++++..+.++ .++...|.-..|=-++..|..-...|||.+.+.++|..
T Consensus 210 a~~~gaDiI~LDn~----s~e~l~~av~----~~~~~~~leaSGGI~~~ni~~yA~tGVD~Is~Galths 271 (281)
T PRK06106 210 ALELGVDAVLLDNM----TPDTLREAVA----IVAGRAITEASGRITPETAPAIAASGVDLISVGWLTHS 271 (281)
T ss_pred HHHcCCCEEEeCCC----CHHHHHHHHH----HhCCCceEEEECCCCHHHHHHHHhcCCCEEEeChhhcC
Confidence 34567777777654 3455555554 44445565667877999999999999999999988753
No 152
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=55.75 E-value=36 Score=31.51 Aligned_cols=115 Identities=16% Similarity=0.125 Sum_probs=65.8
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHhc
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVR 206 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~~ 206 (397)
..++.++.....|+|.+..-+. . +. + +.+++.+. .-.++..+. ..+. ++.+.+.
T Consensus 68 ~~~~~~~~~~~~g~d~v~l~~~-~----~~-~----------~~~~~~~~---~i~~i~~v~---~~~~----~~~~~~~ 121 (236)
T cd04730 68 DFEALLEVALEEGVPVVSFSFG-P----PA-E----------VVERLKAA---GIKVIPTVT---SVEE----ARKAEAA 121 (236)
T ss_pred CHHHHHHHHHhCCCCEEEEcCC-C----CH-H----------HHHHHHHc---CCEEEEeCC---CHHH----HHHHHHc
Confidence 5677888889999999876422 1 11 1 11122111 112333332 2222 2334456
Q ss_pred CCceEEEcCccCC-Cch---hhHHHHHHHHHcCCCCCCcccc-cCCCChHHHHHHHHcCCcEEecchh
Q 015981 207 NVSGYWIGGFGLG-ESM---EERPSLLNAVTDNLPKDWPRMI-CGLGLPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 207 ~~~G~~IgGl~~g-e~~---~~~~~~v~~~~~~Lp~~kpr~l-~G~g~P~~il~~v~~GvD~FD~~~p 269 (397)
+.+++.+.|...+ ... ....+.++.+.+.+ +.|.++ .|+.+|.++..++..|+|.++....
T Consensus 122 gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~--~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~ 187 (236)
T cd04730 122 GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV--DIPVIAAGGIADGRGIAAALALGADGVQMGTR 187 (236)
T ss_pred CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCcEEEEchh
Confidence 7777776543221 110 12245666655544 468765 5888899999999999999988744
No 153
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=55.59 E-value=1.3e+02 Score=28.98 Aligned_cols=83 Identities=24% Similarity=0.354 Sum_probs=51.4
Q ss_pred CeEEeecCCCCHHHHHHHHHHHHhc--CCceEEEc---------CccCCCchhhHHHHHHHHHcCCCCCCcccc-c--CC
Q 015981 182 AVFGSIVGGSNIEERKRCAQEVAVR--NVSGYWIG---------GFGLGESMEERPSLLNAVTDNLPKDWPRMI-C--GL 247 (397)
Q Consensus 182 ~lf~~iqGg~~~~lR~~sa~~l~~~--~~~G~~Ig---------Gl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l-~--G~ 247 (397)
.++..|.| .+.+.-.++++.+.+. .++++-|- |-..+.+++...++++++.+.. +.|..+ + +.
T Consensus 92 pl~~qi~g-~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~--~~pv~vKi~~~~ 168 (300)
T TIGR01037 92 PLIASVYG-SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKT--DVPVFAKLSPNV 168 (300)
T ss_pred cEEEEeec-CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc--CCCEEEECCCCh
Confidence 46666665 4555566788887754 36777663 2223456677788888888765 466543 2 22
Q ss_pred CChHHHHH-HHHcCCcEEecc
Q 015981 248 GLPEEVLQ-GVAAGVDLFDSA 267 (397)
Q Consensus 248 g~P~~il~-~v~~GvD~FD~~ 267 (397)
....++.. +.+.|+|.+...
T Consensus 169 ~~~~~~a~~l~~~G~d~i~v~ 189 (300)
T TIGR01037 169 TDITEIAKAAEEAGADGLTLI 189 (300)
T ss_pred hhHHHHHHHHHHcCCCEEEEE
Confidence 23445554 457999999754
No 154
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=55.47 E-value=54 Score=32.71 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=49.8
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEc---Cc---cC--CCchhhHHHHHHHHHcCCCCCCcc--cccCCCChHHHHHHHHcC
Q 015981 191 SNIEERKRCAQEVAVRNVSGYWIG---GF---GL--GESMEERPSLLNAVTDNLPKDWPR--MICGLGLPEEVLQGVAAG 260 (397)
Q Consensus 191 ~~~~lR~~sa~~l~~~~~~G~~Ig---Gl---~~--ge~~~~~~~~v~~~~~~Lp~~kpr--~l~G~g~P~~il~~v~~G 260 (397)
+..+...+.++.+.+.|++-+-+| |+ +. |.....-.+.++.+.+..+.-+.. .++|.++..++-.+.+.|
T Consensus 22 f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 101 (337)
T PRK08195 22 YTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAG 101 (337)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcC
Confidence 455667777888888888887775 11 11 221111244566665666654433 235899999999999999
Q ss_pred CcEEecc
Q 015981 261 VDLFDSA 267 (397)
Q Consensus 261 vD~FD~~ 267 (397)
+|.+-..
T Consensus 102 vd~iri~ 108 (337)
T PRK08195 102 VRVVRVA 108 (337)
T ss_pred CCEEEEE
Confidence 9976533
No 155
>TIGR03586 PseI pseudaminic acid synthase.
Probab=55.38 E-value=60 Score=32.29 Aligned_cols=88 Identities=19% Similarity=0.302 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCCCCC-eEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHc
Q 015981 156 NKRNKTSVDRTVKWLDECIARSPAGGA-VFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234 (397)
Q Consensus 156 ~kr~~~sverT~~w~~~~l~~~~~~~~-lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~ 234 (397)
..+.-+..+-+..|..+..+...+.+. .+..+. + .++++.+.+.+++.|-|+..... -..+|+.+..
T Consensus 65 ~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~stpf---d----~~svd~l~~~~v~~~KI~S~~~~-----n~~LL~~va~ 132 (327)
T TIGR03586 65 LYDLYQEAHTPWEWHKELFERAKELGLTIFSSPF---D----ETAVDFLESLDVPAYKIASFEIT-----DLPLIRYVAK 132 (327)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhCCcEEEccC---C----HHHHHHHHHcCCCEEEECCcccc-----CHHHHHHHHh
Confidence 344556678888998888776554444 444443 3 34678888899999999853322 2467776665
Q ss_pred CCCCCCccccc-CCCChHHHHHHHH
Q 015981 235 NLPKDWPRMIC-GLGLPEEVLQGVA 258 (397)
Q Consensus 235 ~Lp~~kpr~l~-G~g~P~~il~~v~ 258 (397)
. +||.+|. |.++..+|..+++
T Consensus 133 ~---gkPvilstG~~t~~Ei~~Av~ 154 (327)
T TIGR03586 133 T---GKPIIMSTGIATLEEIQEAVE 154 (327)
T ss_pred c---CCcEEEECCCCCHHHHHHHHH
Confidence 3 8999875 9999999999974
No 156
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=55.14 E-value=2.1e+02 Score=28.10 Aligned_cols=43 Identities=9% Similarity=0.132 Sum_probs=33.0
Q ss_pred HHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecch
Q 015981 226 PSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~ 268 (397)
.+.|..+...++.+.|..-. |+.+..|+++.+.+|.|.+-..-
T Consensus 228 l~~v~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqv~t 271 (310)
T PRK02506 228 LANVRAFYQRLNPSIQIIGTGGVKTGRDAFEHILCGASMVQVGT 271 (310)
T ss_pred HHHHHHHHHhcCCCCCEEEECCCCCHHHHHHHHHcCCCHHhhhH
Confidence 45666666777666776544 88899999999999999876553
No 157
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=55.12 E-value=37 Score=30.78 Aligned_cols=56 Identities=16% Similarity=0.164 Sum_probs=38.7
Q ss_pred HHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhH
Q 015981 202 EVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIY 270 (397)
Q Consensus 202 ~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~ 270 (397)
...+.+.+|+.++++. . ++++.+. ... +.+++|+.+|.++..+...|+|.+=. ||+
T Consensus 79 ~A~~~gAdgv~~p~~~--~------~~~~~~~-~~~---~~~i~G~~t~~e~~~A~~~Gadyv~~-Fpt 134 (187)
T PRK07455 79 EAIAAGAQFCFTPHVD--P------ELIEAAV-AQD---IPIIPGALTPTEIVTAWQAGASCVKV-FPV 134 (187)
T ss_pred HHHHcCCCEEECCCCC--H------HHHHHHH-HcC---CCEEcCcCCHHHHHHHHHCCCCEEEE-CcC
Confidence 3445788899887654 1 2222222 111 13678999999999999999999876 886
No 158
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=54.88 E-value=94 Score=26.54 Aligned_cols=75 Identities=8% Similarity=-0.021 Sum_probs=41.7
Q ss_pred eecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCC---CHHHHHHHH
Q 015981 124 RLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGS---NIEERKRCA 200 (397)
Q Consensus 124 ~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~---~~~lR~~sa 200 (397)
..++||++++....-+||++..-+-.++.. ..+.++..-++ ...- .. +.++.||. ...-+.+..
T Consensus 35 ~~v~~e~~v~aa~~~~adiVglS~L~t~~~-------~~~~~~~~~l~----~~gl-~~-v~vivGG~~~i~~~d~~~~~ 101 (128)
T cd02072 35 VLSPQEEFIDAAIETDADAILVSSLYGHGE-------IDCKGLREKCD----EAGL-KD-ILLYVGGNLVVGKQDFEDVE 101 (128)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeccccCCH-------HHHHHHHHHHH----HCCC-CC-CeEEEECCCCCChhhhHHHH
Confidence 567999999999999999986532222221 12222332222 1111 12 55666665 223333445
Q ss_pred HHHHhcCCceE
Q 015981 201 QEVAVRNVSGY 211 (397)
Q Consensus 201 ~~l~~~~~~G~ 211 (397)
+++.++|++..
T Consensus 102 ~~L~~~Gv~~v 112 (128)
T cd02072 102 KRFKEMGFDRV 112 (128)
T ss_pred HHHHHcCCCEE
Confidence 56777888755
No 159
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=54.84 E-value=86 Score=27.36 Aligned_cols=82 Identities=17% Similarity=0.142 Sum_probs=54.8
Q ss_pred eEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCc
Q 015981 183 VFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVD 262 (397)
Q Consensus 183 lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD 262 (397)
=|-+|.+|...- -.+.++...+.+++.+.+.++..+ -......+++.+.+.=..+-..++=|+-.|.++..+-++|+|
T Consensus 40 GfeVi~~g~~~t-p~e~v~aA~~~dv~vIgvSsl~g~-h~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G~~ 117 (143)
T COG2185 40 GFEVINLGLFQT-PEEAVRAAVEEDVDVIGVSSLDGG-HLTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMGVD 117 (143)
T ss_pred CceEEecCCcCC-HHHHHHHHHhcCCCEEEEEeccch-HHHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhCcc
Confidence 366666554421 156666667789999999988743 334556777777666555555445577789999999999998
Q ss_pred EEec
Q 015981 263 LFDS 266 (397)
Q Consensus 263 ~FD~ 266 (397)
-+=.
T Consensus 118 ~if~ 121 (143)
T COG2185 118 RIFG 121 (143)
T ss_pred eeeC
Confidence 5433
No 160
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=54.51 E-value=38 Score=32.84 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=44.3
Q ss_pred HHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHH
Q 015981 202 EVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYH 271 (397)
Q Consensus 202 ~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~ 271 (397)
+..+.+++.+.+..+ ++++..++++.....-| +...-..|=-+|.++....+.|||.+.+.+++.
T Consensus 197 ~A~~~GaDiI~LDn~----~~e~l~~~v~~~~~~~~-~~~ieAsGgIt~~ni~~ya~~GvD~IsvG~l~~ 261 (273)
T PRK05848 197 NAMNAGADIVMCDNM----SVEEIKEVVAYRNANYP-HVLLEASGNITLENINAYAKSGVDAISSGSLIH 261 (273)
T ss_pred HHHHcCCCEEEECCC----CHHHHHHHHHHhhccCC-CeEEEEECCCCHHHHHHHHHcCCCEEEeChhhc
Confidence 445678888887654 55666777764322222 122334543499999999999999999998874
No 161
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=53.35 E-value=22 Score=33.66 Aligned_cols=120 Identities=17% Similarity=0.216 Sum_probs=57.0
Q ss_pred ChhhHHHHH----HhcCCcEE--EEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCC-eEEeecCCCCHHHHHHH
Q 015981 127 KPVEYMEMI----TSMKPNLW--ATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGA-VFGSIVGGSNIEERKRC 199 (397)
Q Consensus 127 tpe~~~~~q----~~i~pDi~--~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~-lf~~iqGg~~~~lR~~s 199 (397)
|.++-+++. +.++.|++ -.+.|+..-.++.-. |++=+++..+ ++. +|+-+. .|+. .
T Consensus 74 tA~EAv~~A~laRe~~~t~wIKLEVi~D~~~L~PD~~e-------tl~Aae~Lv~----eGF~VlPY~~----~D~v--~ 136 (247)
T PF05690_consen 74 TAEEAVRTARLAREAFGTNWIKLEVIGDDKTLLPDPIE-------TLKAAEILVK----EGFVVLPYCT----DDPV--L 136 (247)
T ss_dssp SHHHHHHHHHHHHHTTS-SEEEE--BS-TTT--B-HHH-------HHHHHHHHHH----TT-EEEEEE-----S-HH--H
T ss_pred CHHHHHHHHHHHHHHcCCCeEEEEEeCCCCCcCCChhH-------HHHHHHHHHH----CCCEEeecCC----CCHH--H
Confidence 556655543 46788887 333343332233323 3333333333 233 666553 3332 3
Q ss_pred HHHHHhcCCceEEEcCccCCCch-hhHHHHHHHHHcCCCCCCcccc-cCCCChHHHHHHHHcCCcEEe
Q 015981 200 AQEVAVRNVSGYWIGGFGLGESM-EERPSLLNAVTDNLPKDWPRMI-CGLGLPEEVLQGVAAGVDLFD 265 (397)
Q Consensus 200 a~~l~~~~~~G~~IgGl~~ge~~-~~~~~~v~~~~~~Lp~~kpr~l-~G~g~P~~il~~v~~GvD~FD 265 (397)
++++.+.|..-..--|-..|... -.-...++.+++.+ +-|..+ -|+|+|.+...+.++|+|-.=
T Consensus 137 akrL~d~GcaavMPlgsPIGSg~Gi~n~~~l~~i~~~~--~vPvIvDAGiG~pSdaa~AMElG~daVL 202 (247)
T PF05690_consen 137 AKRLEDAGCAAVMPLGSPIGSGRGIQNPYNLRIIIERA--DVPVIVDAGIGTPSDAAQAMELGADAVL 202 (247)
T ss_dssp HHHHHHTT-SEBEEBSSSTTT---SSTHHHHHHHHHHG--SSSBEEES---SHHHHHHHHHTT-SEEE
T ss_pred HHHHHHCCCCEEEecccccccCcCCCCHHHHHHHHHhc--CCcEEEeCCCCCHHHHHHHHHcCCceee
Confidence 56777777776655544433111 00123344444554 467766 499999999999999999543
No 162
>PRK07315 fructose-bisphosphate aldolase; Provisional
Probab=53.34 E-value=2e+02 Score=28.14 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=44.6
Q ss_pred hcCCceEEEc--Ccc---CCCchhhHHHHHHHHHcCCCCCCcccccCC--CChHHHHHHHHcCCcEEecch
Q 015981 205 VRNVSGYWIG--GFG---LGESMEERPSLLNAVTDNLPKDWPRMICGL--GLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 205 ~~~~~G~~Ig--Gl~---~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~--g~P~~il~~v~~GvD~FD~~~ 268 (397)
+.++|.+++| -.+ .+..+..-.+.++.+.+.++ +.|..++|- -+.+++..++..||+-+-..-
T Consensus 164 ~tgvD~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~-~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T 233 (293)
T PRK07315 164 ETGIDFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVP-GFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNT 233 (293)
T ss_pred HcCCCEEeeccccccccCCCCCCcCCHHHHHHHHHhcc-CCCEEEECCCCCCHHHHHHHHHcCCCEEEEcc
Confidence 5688877766 442 12223334677888877774 489999988 578889999999999887663
No 163
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.
Probab=53.24 E-value=60 Score=32.34 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=50.6
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEc---Ccc-----CCCchhhHHHHHHHHHcCCCCCCcc--cccCCCChHHHHHHHHcC
Q 015981 191 SNIEERKRCAQEVAVRNVSGYWIG---GFG-----LGESMEERPSLLNAVTDNLPKDWPR--MICGLGLPEEVLQGVAAG 260 (397)
Q Consensus 191 ~~~~lR~~sa~~l~~~~~~G~~Ig---Gl~-----~ge~~~~~~~~v~~~~~~Lp~~kpr--~l~G~g~P~~il~~v~~G 260 (397)
+..+-..+-++.+.+.|++-+-+| |++ .|.....-.+.++.+.+.++.-+.. .++|.++..++-.+.+.|
T Consensus 21 f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~g 100 (333)
T TIGR03217 21 FTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAG 100 (333)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCC
Confidence 455666777888888888888775 221 1221111234555666666655544 235899999999999999
Q ss_pred CcEEecc
Q 015981 261 VDLFDSA 267 (397)
Q Consensus 261 vD~FD~~ 267 (397)
+|.+-..
T Consensus 101 vd~iri~ 107 (333)
T TIGR03217 101 ARTVRVA 107 (333)
T ss_pred CCEEEEE
Confidence 9987644
No 164
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=53.10 E-value=2e+02 Score=27.06 Aligned_cols=119 Identities=12% Similarity=0.062 Sum_probs=66.8
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCC--eEEee-cCCCCHHHHHHHHHHH
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGA--VFGSI-VGGSNIEERKRCAQEV 203 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~--lf~~i-qGg~~~~lR~~sa~~l 203 (397)
.|++|++.....|+|++..=.+.++ ...++++|.++. +. -.|+. -.++..+.-+..+..+
T Consensus 79 ~P~~~i~~~~~aGad~It~H~Ea~~----------~~~~~l~~Ik~~-------g~~~kaGlalnP~Tp~~~i~~~l~~v 141 (228)
T PRK08091 79 DQFEVAKACVAAGADIVTLQVEQTH----------DLALTIEWLAKQ-------KTTVLIGLCLCPETPISLLEPYLDQI 141 (228)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcc----------cHHHHHHHHHHC-------CCCceEEEEECCCCCHHHHHHHHhhc
Confidence 5999999999999998877545331 245677776642 22 34443 3445554444444433
Q ss_pred Hh---cC-CceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc---cccCCCChHHHHHHHHcCCcEEecc
Q 015981 204 AV---RN-VSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR---MICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 204 ~~---~~-~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr---~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
.. +- -+|| ||-..-+ ...+=|+.+.+.+++..+. .+=|--++..+-.+++.|+|+|-+-
T Consensus 142 D~VLiMtV~PGf--gGQ~f~~---~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~G 207 (228)
T PRK08091 142 DLIQILTLDPRT--GTKAPSD---LILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSG 207 (228)
T ss_pred CEEEEEEECCCC--CCccccH---HHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 21 00 0122 1211111 1223333444444443333 3447678999999999999999765
No 165
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=53.07 E-value=50 Score=29.76 Aligned_cols=57 Identities=18% Similarity=0.310 Sum_probs=38.5
Q ss_pred HHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchh
Q 015981 200 AQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 200 a~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p 269 (397)
++...+.+.+++..++.. .++++.+... .+.++.|+.+|.++..+.+.|+|.+=. ||
T Consensus 69 ~~~a~~~Ga~~i~~p~~~--------~~~~~~~~~~----~~~~i~gv~t~~e~~~A~~~Gad~i~~-~p 125 (190)
T cd00452 69 ADAAIAAGAQFIVSPGLD--------PEVVKAANRA----GIPLLPGVATPTEIMQALELGADIVKL-FP 125 (190)
T ss_pred HHHHHHcCCCEEEcCCCC--------HHHHHHHHHc----CCcEECCcCCHHHHHHHHHCCCCEEEE-cC
Confidence 345556788888765422 2344444432 133577999999999999999998875 45
No 166
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=53.07 E-value=31 Score=30.88 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=43.9
Q ss_pred HHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhh
Q 015981 202 EVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLT 273 (397)
Q Consensus 202 ~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a 273 (397)
+..+.+++++.+.-+ +++++.++++.+... +..-..-+.|=-++..|..-...|||.|.....+..|
T Consensus 95 ea~~~g~d~I~lD~~----~~~~~~~~v~~l~~~-~~~v~ie~SGGI~~~ni~~ya~~gvD~isvg~~~~~a 161 (169)
T PF01729_consen 95 EALEAGADIIMLDNM----SPEDLKEAVEELREL-NPRVKIEASGGITLENIAEYAKTGVDVISVGSLTHSA 161 (169)
T ss_dssp HHHHTT-SEEEEES-----CHHHHHHHHHHHHHH-TTTSEEEEESSSSTTTHHHHHHTT-SEEEECHHHHSB
T ss_pred HHHHhCCCEEEecCc----CHHHHHHHHHHHhhc-CCcEEEEEECCCCHHHHHHHHhcCCCEEEcChhhcCC
Confidence 444578889988865 446667777655333 3322223557779999999999999999987655433
No 167
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=52.62 E-value=47 Score=32.47 Aligned_cols=66 Identities=12% Similarity=0.023 Sum_probs=45.3
Q ss_pred HHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHh
Q 015981 202 EVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHL 272 (397)
Q Consensus 202 ~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~ 272 (397)
+..+.+++.+.+..+. +++..+.++.... ...+...-..|=-++..|..-...|||.|.+.++|..
T Consensus 214 eal~~gaDiI~LDnm~----~e~vk~av~~~~~-~~~~v~ieaSGGI~~~ni~~yA~tGvD~Is~galt~s 279 (289)
T PRK07896 214 EVLAEGAELVLLDNFP----VWQTQEAVQRRDA-RAPTVLLESSGGLTLDTAAAYAETGVDYLAVGALTHS 279 (289)
T ss_pred HHHHcCCCEEEeCCCC----HHHHHHHHHHHhc-cCCCEEEEEECCCCHHHHHHHHhcCCCEEEeChhhcC
Confidence 3346788888887543 5666666653322 2222333356777999999999999999999988753
No 168
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=52.09 E-value=45 Score=32.07 Aligned_cols=64 Identities=17% Similarity=0.071 Sum_probs=45.4
Q ss_pred HHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhh
Q 015981 202 EVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLT 273 (397)
Q Consensus 202 ~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a 273 (397)
+..+.+++.+.+|.+. ++++.++++ .++...|....|=-++.++......|+|.+-...++..+
T Consensus 193 ~A~~~gaDyI~ld~~~----~e~lk~~v~----~~~~~ipi~AsGGI~~~ni~~~a~~Gvd~Isvgait~sa 256 (265)
T TIGR00078 193 EAAEAGADIIMLDNMK----PEEIKEAVQ----LLKGRVLLEASGGITLDNLEEYAETGVDVISSGALTHSV 256 (265)
T ss_pred HHHHcCCCEEEECCCC----HHHHHHHHH----HhcCCCcEEEECCCCHHHHHHHHHcCCCEEEeCHHHcCC
Confidence 3345788888887644 244444444 344446777777669999999999999999998877533
No 169
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=51.88 E-value=1.9e+02 Score=26.40 Aligned_cols=130 Identities=17% Similarity=0.161 Sum_probs=71.3
Q ss_pred ecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHH
Q 015981 125 LIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVA 204 (397)
Q Consensus 125 ~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~ 204 (397)
.+|..-+..+....++|++..---........++.. .+|.. .......++..|-|+ +.+.-.++++.+.
T Consensus 9 ~~~~~~fR~l~~~~~~~~~~t~~~~~~~~~~~~~~~------~~~~~----~~~~~~p~~~qi~g~-~~~~~~~aa~~~~ 77 (231)
T cd02801 9 GVTDLPFRLLCRRYGADLVYTEMISAKALLRGNRKR------LRLLT----RNPEERPLIVQLGGS-DPETLAEAAKIVE 77 (231)
T ss_pred CCcCHHHHHHHHHHCCCEEEecCEEEhhhhhcCHHH------HHhhc----cCccCCCEEEEEcCC-CHHHHHHHHHHHH
Confidence 367778889999999999875311111110111110 22221 222223466666554 5555567888888
Q ss_pred hcCCceEEEcCcc-------------CCCchhhHHHHHHHHHcCCCCCCcccc---cCCC---ChHHHHH-HHHcCCcEE
Q 015981 205 VRNVSGYWIGGFG-------------LGESMEERPSLLNAVTDNLPKDWPRMI---CGLG---LPEEVLQ-GVAAGVDLF 264 (397)
Q Consensus 205 ~~~~~G~~IgGl~-------------~ge~~~~~~~~v~~~~~~Lp~~kpr~l---~G~g---~P~~il~-~v~~GvD~F 264 (397)
+.|++|+-|-+-. ....++...++++++.+.++ .|.-+ .|.. ...+++. +.+.|+|.+
T Consensus 78 ~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~--~~v~vk~r~~~~~~~~~~~~~~~l~~~Gvd~i 155 (231)
T cd02801 78 ELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP--IPVTVKIRLGWDDEEETLELAKALEDAGASAL 155 (231)
T ss_pred hcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC--CCEEEEEeeccCCchHHHHHHHHHHHhCCCEE
Confidence 8899999874211 11344556778888877765 34322 2222 2334443 346899998
Q ss_pred ecc
Q 015981 265 DSA 267 (397)
Q Consensus 265 D~~ 267 (397)
...
T Consensus 156 ~v~ 158 (231)
T cd02801 156 TVH 158 (231)
T ss_pred EEC
Confidence 654
No 170
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=51.83 E-value=1.6e+02 Score=29.59 Aligned_cols=57 Identities=16% Similarity=0.089 Sum_probs=39.6
Q ss_pred cCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEe
Q 015981 206 RNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFD 265 (397)
Q Consensus 206 ~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD 265 (397)
.+++-+.|.- ..|.+ +...+.|+++.+..|. .+...=.+.+|+....++..|+|.+=
T Consensus 121 ~g~D~iviD~-AhGhs-~~~i~~ik~ik~~~P~-~~vIaGNV~T~e~a~~Li~aGAD~vK 177 (346)
T PRK05096 121 PALNFICIDV-ANGYS-EHFVQFVAKAREAWPD-KTICAGNVVTGEMVEELILSGADIVK 177 (346)
T ss_pred CCCCEEEEEC-CCCcH-HHHHHHHHHHHHhCCC-CcEEEecccCHHHHHHHHHcCCCEEE
Confidence 4677777763 33554 3456777888887773 55444468888888888888888873
No 171
>PRK14057 epimerase; Provisional
Probab=50.87 E-value=2.3e+02 Score=27.13 Aligned_cols=126 Identities=10% Similarity=0.029 Sum_probs=67.1
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHh--CCCCCCeEEee-cCCCCHHHHHHHHHHH
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIAR--SPAGGAVFGSI-VGGSNIEERKRCAQEV 203 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~--~~~~~~lf~~i-qGg~~~~lR~~sa~~l 203 (397)
.|+.|++.....|+|++..=.+.+. ...|+++|.++.=.. +.+.....|+. -.+...+.-+..+..
T Consensus 86 ~P~~~i~~~~~aGad~It~H~Ea~~----------~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~- 154 (254)
T PRK14057 86 DQWTAAQACVKAGAHCITLQAEGDI----------HLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSD- 154 (254)
T ss_pred CHHHHHHHHHHhCCCEEEEeecccc----------CHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHh-
Confidence 5999999999999999877655332 256777777653100 00001123443 344555444433333
Q ss_pred HhcCCceEEEcCccC---CCch-hhHHHHHHHHHcCCCCCCcc---cccCCCChHHHHHHHHcCCcEEecc
Q 015981 204 AVRNVSGYWIGGFGL---GESM-EERPSLLNAVTDNLPKDWPR---MICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 204 ~~~~~~G~~IgGl~~---ge~~-~~~~~~v~~~~~~Lp~~kpr---~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++.+.|=.... |... ++..+=|+.+.+.+++..+. -+=|--++..+..+++.|+|+|-+-
T Consensus 155 ----vD~VLvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~G 221 (254)
T PRK14057 155 ----VEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSG 221 (254)
T ss_pred ----CCEEEEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 22222211111 1111 11222233333444433332 3447678999999999999999876
No 172
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=50.85 E-value=34 Score=31.71 Aligned_cols=56 Identities=14% Similarity=0.177 Sum_probs=40.2
Q ss_pred HHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCc
Q 015981 199 CAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVD 262 (397)
Q Consensus 199 sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD 262 (397)
-++.+.+.+.+++.|||- .|-+.+.+.++++.+.+. .++|.+++ +|++..|. .|+|
T Consensus 16 ia~~v~~~gtDaI~VGGS-~gvt~~~~~~~v~~ik~~--~~lPvilf-p~~~~~i~----~~aD 71 (205)
T TIGR01769 16 IAKNAKDAGTDAIMVGGS-LGIVESNLDQTVKKIKKI--TNLPVILF-PGNVNGLS----RYAD 71 (205)
T ss_pred HHHHHHhcCCCEEEEcCc-CCCCHHHHHHHHHHHHhh--cCCCEEEE-CCCccccC----cCCC
Confidence 455677789999999984 566667777888877764 36888887 67665443 5566
No 173
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=50.75 E-value=85 Score=26.09 Aligned_cols=71 Identities=8% Similarity=-0.074 Sum_probs=39.2
Q ss_pred ecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHH
Q 015981 125 LIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVA 204 (397)
Q Consensus 125 ~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~ 204 (397)
.++++++++.....+||++..-.-. ...++...+|++++-+... .-..++.||... .+..+.+.
T Consensus 36 ~vp~e~~~~~a~~~~~d~V~iS~~~----------~~~~~~~~~~~~~L~~~~~---~~i~i~~GG~~~---~~~~~~~~ 99 (122)
T cd02071 36 RQTPEEIVEAAIQEDVDVIGLSSLS----------GGHMTLFPEVIELLRELGA---GDILVVGGGIIP---PEDYELLK 99 (122)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcccc----------hhhHHHHHHHHHHHHhcCC---CCCEEEEECCCC---HHHHHHHH
Confidence 3788999999999999998653111 1111222333333322211 123455555433 22245666
Q ss_pred hcCCceE
Q 015981 205 VRNVSGY 211 (397)
Q Consensus 205 ~~~~~G~ 211 (397)
+.|+++|
T Consensus 100 ~~G~d~~ 106 (122)
T cd02071 100 EMGVAEI 106 (122)
T ss_pred HCCCCEE
Confidence 7888888
No 174
>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=50.22 E-value=1.1e+02 Score=30.30 Aligned_cols=131 Identities=19% Similarity=0.163 Sum_probs=80.3
Q ss_pred ecChhhHHHHHHhcCC-cEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHH
Q 015981 125 LIKPVEYMEMITSMKP-NLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEV 203 (397)
Q Consensus 125 ~ltpe~~~~~q~~i~p-Di~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l 203 (397)
.+|..-+..+...+|+ |+.++- -+.... ....-+.+..-+.. . .....+++-.+|.+++.-.++++.+
T Consensus 20 gvtd~~fR~l~~~~ga~~~~~TE--mv~~~~----~~~~~~~~~~~~~~---~--~~e~p~~vQl~gsdp~~l~eaA~~~ 88 (323)
T COG0042 20 GVTDLPFRRLARELGAYDLLYTE--MVSAKA----LLHGRKKFLLLLDE---L--EEERPVAVQLGGSDPELLAEAAKIA 88 (323)
T ss_pred CCccHHHHHHHHHhCCCceEEEc--cEEEhh----hccCCcchhhhcCc---C--CCCCCEEEEecCCCHHHHHHHHHHH
Confidence 3677889999999999 877553 221110 00000001111100 0 1123477777889999999999999
Q ss_pred HhcCCceEEEc-----------Ccc--CCCchhhHHHHHHHHHcCCCCCCcccc---cCCCCh----HHHHHHHH-cCCc
Q 015981 204 AVRNVSGYWIG-----------GFG--LGESMEERPSLLNAVTDNLPKDWPRMI---CGLGLP----EEVLQGVA-AGVD 262 (397)
Q Consensus 204 ~~~~~~G~~Ig-----------Gl~--~ge~~~~~~~~v~~~~~~Lp~~kpr~l---~G~g~P----~~il~~v~-~GvD 262 (397)
.+.+++++-|- |.+ +-.+++...++|+++.+.++ +.|.-+ .|.-.+ .++...++ .|+|
T Consensus 89 ~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~-~iPVTVKiRlG~d~~~~~~~~ia~~~~~~g~~ 167 (323)
T COG0042 89 EELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVG-DIPVTVKIRLGWDDDDILALEIARILEDAGAD 167 (323)
T ss_pred HhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhC-CCCeEEEEecccCcccccHHHHHHHHHhcCCC
Confidence 99887776552 111 12466778999999999988 777543 455444 35777764 7799
Q ss_pred EEecc
Q 015981 263 LFDSA 267 (397)
Q Consensus 263 ~FD~~ 267 (397)
.|-.-
T Consensus 168 ~ltVH 172 (323)
T COG0042 168 ALTVH 172 (323)
T ss_pred EEEEe
Confidence 88644
No 175
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=49.72 E-value=20 Score=31.38 Aligned_cols=46 Identities=28% Similarity=0.370 Sum_probs=29.0
Q ss_pred CCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015981 324 CCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRR 387 (397)
Q Consensus 324 ~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~~~~ 387 (397)
-|++|++-|=+ .+ |-..=..+-+.||+.|.+|.=++-+.+|+..|+
T Consensus 42 rCp~Cq~qsi~------~s------------~a~~A~dmR~~I~~~l~~G~s~~eI~~~~v~rY 87 (148)
T PF03918_consen 42 RCPVCQNQSIA------DS------------NAPIARDMRREIREMLAEGKSDEEIIDYFVERY 87 (148)
T ss_dssp E-TTTTS-CTT------T--------------SHHHHHHHHHHHHHHHHT--HHHHHHHHHHHH
T ss_pred cCCCCCCCchh------hc------------CcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhc
Confidence 47779887633 22 344445677889999999988887777776665
No 176
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=49.61 E-value=68 Score=31.77 Aligned_cols=65 Identities=15% Similarity=0.119 Sum_probs=46.9
Q ss_pred HHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEec
Q 015981 199 CAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 199 sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~ 266 (397)
-++.+.+.+++.+.|.- ..|.+ +...++++++.+..| +.|...-.+.++.+...+++.|+|.+..
T Consensus 98 ~~~~l~eagv~~I~vd~-~~G~~-~~~~~~i~~ik~~~p-~v~Vi~G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 98 RAEALVEAGVDVIVIDS-AHGHS-VYVIEMIKFIKKKYP-NVDVIAGNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred HHHHHHhcCCCEEEEEC-CCCCc-HHHHHHHHHHHHHCC-CceEEECCCCCHHHHHHHHhcCCCEEEE
Confidence 34556667888887753 22433 445677888887777 5665555788999999999999999974
No 177
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=49.49 E-value=2.3e+02 Score=26.69 Aligned_cols=136 Identities=12% Similarity=0.099 Sum_probs=77.7
Q ss_pred cChhhHHHHHHhcCC--cEEEEcCCCCCCC-C----CHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHH
Q 015981 126 IKPVEYMEMITSMKP--NLWATLADEVPAW-A----NNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKR 198 (397)
Q Consensus 126 ltpe~~~~~q~~i~p--Di~~~L~d~~~~~-~----~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~ 198 (397)
.||+++.+..+.+.+ |++-. .=.||-. . ....+-+..++..+.++...+. .-+++.=+-.+....--..
T Consensus 77 ~~~ee~~~~a~~v~~~~d~Idi-N~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~---~~PVsvKiR~~~~~~~~~~ 152 (231)
T TIGR00736 77 VDLEEAYDVLLTIAEHADIIEI-NAHCRQPEITEIGIGQELLKNKELLKEFLTKMKEL---NKPIFVKIRGNCIPLDELI 152 (231)
T ss_pred CCHHHHHHHHHHHhcCCCEEEE-ECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcC---CCcEEEEeCCCCCcchHHH
Confidence 488999998877654 44422 2234331 0 0111222333333333333211 2246665654444322335
Q ss_pred HHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecc
Q 015981 199 CAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 199 sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~ 267 (397)
.++.+.+.|++++.|.+.-.|... --++.|+.+.+.++ +.|..-- |+-++++...+...|+|.+=..
T Consensus 153 ~a~~l~~aGad~i~Vd~~~~g~~~-a~~~~I~~i~~~~~-~ipIIgNGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 153 DALNLVDDGFDGIHVDAMYPGKPY-ADMDLLKILSEEFN-DKIIIGNNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred HHHHHHHcCCCEEEEeeCCCCCch-hhHHHHHHHHHhcC-CCcEEEECCcCCHHHHHHHHHhCCCeEEEc
Confidence 666777889999999865544321 23567777777664 3564433 6668999999999999987554
No 178
>PRK11613 folP dihydropteroate synthase; Provisional
Probab=49.46 E-value=93 Score=30.30 Aligned_cols=96 Identities=17% Similarity=0.267 Sum_probs=57.0
Q ss_pred eEEee--------cCCCC--HHHHHHHHHHHHhcCCceEEEcCccC--CC----chhhHHHHH---HHHHcCCCCCCccc
Q 015981 183 VFGSI--------VGGSN--IEERKRCAQEVAVRNVSGYWIGGFGL--GE----SMEERPSLL---NAVTDNLPKDWPRM 243 (397)
Q Consensus 183 lf~~i--------qGg~~--~~lR~~sa~~l~~~~~~G~~IgGl~~--ge----~~~~~~~~v---~~~~~~Lp~~kpr~ 243 (397)
++||+ -||.+ .+.-.+-++++.+.|.+-+-|||-+. |. ..+|+.+++ +.+.+.+ +.| .
T Consensus 17 imGIlNvTpDSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~--~~~-I 93 (282)
T PRK11613 17 VMGILNVTPDSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRF--EVW-I 93 (282)
T ss_pred EEEEEcCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CCe-E
Confidence 67777 36643 33333335566677999999998764 21 124544443 4444332 333 2
Q ss_pred ccCCCChHHHHHHHHcCCcEEecc-------hhHHhhhcceeecc
Q 015981 244 ICGLGLPEEVLQGVAAGVDLFDSA-------YIYHLTIGGFALTF 281 (397)
Q Consensus 244 l~G~g~P~~il~~v~~GvD~FD~~-------~p~~~a~~G~al~f 281 (397)
-.-..+|.-+-.|++.|+|++-.. ..-..++.|.+++.
T Consensus 94 SIDT~~~~va~~AL~~GadiINDI~g~~d~~~~~~~a~~~~~vVl 138 (282)
T PRK11613 94 SVDTSKPEVIRESAKAGAHIINDIRSLSEPGALEAAAETGLPVCL 138 (282)
T ss_pred EEECCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 335668999999999999999322 22334566655554
No 179
>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=49.34 E-value=2e+02 Score=28.03 Aligned_cols=131 Identities=14% Similarity=0.136 Sum_probs=68.8
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCH---H-------HH
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNI---E-------ER 196 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~---~-------lR 196 (397)
+.+...+..+ .|.+-+|. |.-.. + .+.-++.|.+..+.+-...-.-..=+|.|-|+.+. + --
T Consensus 86 ~~e~i~~Ai~-~GftSVM~--DgS~l--~---~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~p 157 (284)
T PRK09195 86 KFDDIAQKVR-SGVRSVMI--DGSHL--P---FAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDP 157 (284)
T ss_pred CHHHHHHHHH-cCCCEEEe--CCCCC--C---HHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCH
Confidence 4555555554 47777776 32211 2 34455555555544432210001135556433221 0 12
Q ss_pred HHHHHHHHhcCCceEEE--cCccCC--CchhhHHHHHHHHHcCCCCCCcccccCC-CCh-HHHHHHHHcCCcEEecc
Q 015981 197 KRCAQEVAVRNVSGYWI--GGFGLG--ESMEERPSLLNAVTDNLPKDWPRMICGL-GLP-EEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~I--gGl~~g--e~~~~~~~~v~~~~~~Lp~~kpr~l~G~-g~P-~~il~~v~~GvD~FD~~ 267 (397)
.++.+++.+.++|-+++ |-.+.. ..+.-..++++.+.+.+ +.|..|+|- |.| +++..++.+||-=+-..
T Consensus 158 eea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~--~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 232 (284)
T PRK09195 158 AQAREFVEATGIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWV--NIPLVLHGASGLPTKDIQQTIKLGICKVNVA 232 (284)
T ss_pred HHHHHHHHHHCcCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCeEEecCCCCCHHHHHHHHHcCCeEEEeC
Confidence 35566666778887665 322211 12233366777777766 579889865 444 55666889998655433
No 180
>PRK08508 biotin synthase; Provisional
Probab=48.75 E-value=1e+02 Score=29.78 Aligned_cols=40 Identities=18% Similarity=0.138 Sum_probs=19.8
Q ss_pred HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEe
Q 015981 226 PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFD 265 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD 265 (397)
.++++.+.+..|.-.+-...|..+++.+..+-+.|+|.+-
T Consensus 78 ~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~~~ 117 (279)
T PRK08508 78 AEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFSYN 117 (279)
T ss_pred HHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCEEc
Confidence 4444444444332111113455566666666666666554
No 181
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=48.70 E-value=62 Score=30.34 Aligned_cols=40 Identities=13% Similarity=0.130 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhH
Q 015981 226 PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIY 270 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~ 270 (397)
.++++.+.+. .--+++|+.+|.||..+.++|.|++= .||.
T Consensus 102 ~~v~~~~~~~----~i~~iPG~~TpsEi~~A~~~Ga~~vK-lFPA 141 (222)
T PRK07114 102 PDIAKVCNRR----KVPYSPGCGSLSEIGYAEELGCEIVK-LFPG 141 (222)
T ss_pred HHHHHHHHHc----CCCEeCCCCCHHHHHHHHHCCCCEEE-ECcc
Confidence 3566655532 22268999999999999999999864 4664
No 182
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=48.57 E-value=1.7e+02 Score=28.90 Aligned_cols=84 Identities=17% Similarity=0.150 Sum_probs=52.8
Q ss_pred CCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCcc-------CCCch-hhHHHHHHHHHcCCCCCCccccc---CCCC
Q 015981 181 GAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFG-------LGESM-EERPSLLNAVTDNLPKDWPRMIC---GLGL 249 (397)
Q Consensus 181 ~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~-------~ge~~-~~~~~~v~~~~~~Lp~~kpr~l~---G~g~ 249 (397)
..+++.|-| ...+.-.+.++.+.+.+++++-|---. .|.+. +...++++++.+.+ +.|..+- ++..
T Consensus 102 ~pvi~sI~g-~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~--~iPV~vKl~p~~~~ 178 (334)
T PRK07565 102 IPVIASLNG-SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAV--SIPVAVKLSPYFSN 178 (334)
T ss_pred CcEEEEecc-CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhcc--CCcEEEEeCCCchh
Confidence 347788855 444444567777777788888772111 12222 23567888887775 4786643 3345
Q ss_pred hHHHHHHH-HcCCcEEecc
Q 015981 250 PEEVLQGV-AAGVDLFDSA 267 (397)
Q Consensus 250 P~~il~~v-~~GvD~FD~~ 267 (397)
+.++..+. +.|+|.+...
T Consensus 179 ~~~~a~~l~~~G~dgI~~~ 197 (334)
T PRK07565 179 LANMAKRLDAAGADGLVLF 197 (334)
T ss_pred HHHHHHHHHHcCCCeEEEE
Confidence 67777754 6999998764
No 183
>PRK07094 biotin synthase; Provisional
Probab=48.54 E-value=1.2e+02 Score=29.64 Aligned_cols=84 Identities=24% Similarity=0.255 Sum_probs=52.2
Q ss_pred EEeecC--CCCHHHHHHHHHHHHhcCCceEEEcCccC----------CCchhhHHHHHHHHHcCCCCCCcccccCCC--C
Q 015981 184 FGSIVG--GSNIEERKRCAQEVAVRNVSGYWIGGFGL----------GESMEERPSLLNAVTDNLPKDWPRMICGLG--L 249 (397)
Q Consensus 184 f~~iqG--g~~~~lR~~sa~~l~~~~~~G~~IgGl~~----------ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g--~ 249 (397)
.++|.| |...+-+.+.++.+.+.+++.+.+.-+.. ..+.++..+++..+.-.+|....+...+.+ .
T Consensus 183 ~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~ 262 (323)
T PRK07094 183 SGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLN 262 (323)
T ss_pred ceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccC
Confidence 344444 67788888889888888877655544431 123355577777777778753333332222 3
Q ss_pred hHHHHHHHHcCCcEEecc
Q 015981 250 PEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 250 P~~il~~v~~GvD~FD~~ 267 (397)
|..-..++..|+|.+=..
T Consensus 263 ~~~~~~~l~~Gan~~~~~ 280 (323)
T PRK07094 263 PDGREKGLKAGANVVMPN 280 (323)
T ss_pred chhHHHHHHcCCceecCC
Confidence 555567889998865543
No 184
>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed
Probab=48.43 E-value=2.7e+02 Score=27.18 Aligned_cols=129 Identities=15% Similarity=0.115 Sum_probs=69.5
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCH----H------HH
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNI----E------ER 196 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~----~------lR 196 (397)
+.+...+.. ..|.+-+|. |.-.. + .+.-+++|.+..+.|-...-.-..=+|.|-|..+. + --
T Consensus 86 ~~e~i~~ai-~~GFtSVM~--DgS~l--p---~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~p 157 (286)
T PRK12738 86 SLDDIRRKV-HAGVRSAMI--DGSHF--P---FAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDP 157 (286)
T ss_pred CHHHHHHHH-HcCCCeEee--cCCCC--C---HHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCH
Confidence 566666655 347666665 32211 1 45556666666655533211001145666443221 0 13
Q ss_pred HHHHHHHHhcCCceEEE--cCccCC--CchhhHHHHHHHHHcCCCCCCcccccCC-CCh-HHHHHHHHcCCcEEe
Q 015981 197 KRCAQEVAVRNVSGYWI--GGFGLG--ESMEERPSLLNAVTDNLPKDWPRMICGL-GLP-EEVLQGVAAGVDLFD 265 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~I--gGl~~g--e~~~~~~~~v~~~~~~Lp~~kpr~l~G~-g~P-~~il~~v~~GvD~FD 265 (397)
.++.+++.+.++|-+++ |-.+.. ..+.--.+.++.+.+.+ +.|..|+|- |.| +++..++.+||-=|-
T Consensus 158 eea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~--~vPLVLHGgSG~~~e~~~kai~~GI~KiN 230 (286)
T PRK12738 158 QEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVV--DVPLVLHGASDVPDEFVRRTIELGVTKVN 230 (286)
T ss_pred HHHHHHHHHhCCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEE
Confidence 45666666778887665 322211 12223366777777776 589889865 444 556668888886443
No 185
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=48.06 E-value=78 Score=30.42 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=43.5
Q ss_pred HHHHhcC-CceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 201 QEVAVRN-VSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 201 ~~l~~~~-~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
+.....+ .||..+.|.+.|.+.+ ++.++.+.+..+ +.|.++-|=-+|.++-.++.. .|-+|..
T Consensus 164 ~~~~~~~~aDavivtG~~TG~~~d--~~~l~~vr~~~~-~~PvllggGvt~eNv~e~l~~-adGviVg 227 (257)
T TIGR00259 164 LDTVERGLADAVILSGKTTGTEVD--LELLKLAKETVK-DTPVLAGSGVNLENVEELLSI-ADGVIVA 227 (257)
T ss_pred HHHHHhcCCCEEEECcCCCCCCCC--HHHHHHHHhccC-CCeEEEECCCCHHHHHHHHhh-CCEEEEC
Confidence 3333344 7899999999886643 455556655554 568655555599999999886 7777765
No 186
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=47.98 E-value=86 Score=28.76 Aligned_cols=73 Identities=15% Similarity=0.059 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCceEEEcCccC--CCchhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHc-CCcEEecchh
Q 015981 195 ERKRCAQEVAVRNVSGYWIGGFGL--GESMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAA-GVDLFDSAYI 269 (397)
Q Consensus 195 lR~~sa~~l~~~~~~G~~IgGl~~--ge~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~-GvD~FD~~~p 269 (397)
.-.+.++.+.+.|++.+.+-+... +.......+.++.+.+.. +.|...- |+.++.++..+++. |+|.+=...+
T Consensus 139 ~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~i~~~~--~ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~ 215 (231)
T cd02801 139 ETLELAKALEDAGASALTVHGRTREQRYSGPADWDYIAEIKEAV--SIPVIANGDIFSLEDALRCLEQTGVDGVMIGRG 215 (231)
T ss_pred HHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCHHHHHHHHhCC--CCeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHH
Confidence 344556677778898887766431 011111244555555543 4676665 67799999999998 8998876644
No 187
>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed
Probab=47.37 E-value=2.4e+02 Score=26.29 Aligned_cols=115 Identities=12% Similarity=0.099 Sum_probs=64.7
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEee-cCCCC-HHHH--------
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSI-VGGSN-IEER-------- 196 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~i-qGg~~-~~lR-------- 196 (397)
||+.+++.....|+|++.... ..+.+.++.+++..... ....++++. -.... .+++
T Consensus 68 t~~~~i~~~~~~gad~itvH~-----~ag~~~i~~~~~~~~~~---------~~~~~~~V~~lts~~~~~l~~~~~~~~~ 133 (230)
T PRK00230 68 TVAKAVRALAKLGVDMVNVHA-----SGGPRMMKAAREALEPK---------SRPLLIAVTVLTSMDEEDLAELGINLSL 133 (230)
T ss_pred cHHHHHHHHHHcCCCEEEEcc-----cCCHHHHHHHHHHhhcc---------CCCeEEEEEECCCCCHHHHHhCcCCCCH
Confidence 888999988999999998862 33444444444333211 112244443 33322 2333
Q ss_pred ----HHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChH-----------HHHHHHHcCC
Q 015981 197 ----KRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPE-----------EVLQGVAAGV 261 (397)
Q Consensus 197 ----~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~-----------~il~~v~~Gv 261 (397)
.+.++...+.+.+|+..++.. +..+.+.++++......|+. |. .+-.++..|.
T Consensus 134 ~~~v~~~a~~a~~~g~dgvv~~~~~-----------~~~ir~~~~~~~~~v~pGI~-~~g~~~~dq~~~~~~~~ai~~Ga 201 (230)
T PRK00230 134 EEQVLRLAKLAQEAGLDGVVCSAQE-----------AAAIREATGPDFLLVTPGIR-PAGSDAGDQKRVMTPAQAIAAGS 201 (230)
T ss_pred HHHHHHHHHHHHHcCCeEEEeChHH-----------HHHHHhhcCCceEEEcCCcC-CCCCCcchHHHHhCHHHHHHcCC
Confidence 123343445688888665311 23333445555556667885 43 5777889999
Q ss_pred cEEecc
Q 015981 262 DLFDSA 267 (397)
Q Consensus 262 D~FD~~ 267 (397)
|.+-.-
T Consensus 202 d~iVvG 207 (230)
T PRK00230 202 DYIVVG 207 (230)
T ss_pred CEEEEC
Confidence 987543
No 188
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.35 E-value=66 Score=31.25 Aligned_cols=66 Identities=15% Similarity=0.131 Sum_probs=45.7
Q ss_pred HHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCC-CCCCcccccCCCChHHHHHHHHcCCcEEecchhHH
Q 015981 202 EVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNL-PKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYH 271 (397)
Q Consensus 202 ~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~L-p~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~ 271 (397)
+..+.+.+.+.+..+ +++++.+++..+...= +.+...-..|=-++..|..-...|||.|.+.++|.
T Consensus 197 ~a~~agaDiI~LDn~----~~e~l~~~v~~l~~~~~~~~~~leaSGGI~~~ni~~yA~tGvD~Is~galt~ 263 (278)
T PRK08385 197 KAAKAGADIIMLDNM----TPEEIREVIEALKREGLRERVKIEVSGGITPENIEEYAKLDVDVISLGALTH 263 (278)
T ss_pred HHHHcCcCEEEECCC----CHHHHHHHHHHHHhcCcCCCEEEEEECCCCHHHHHHHHHcCCCEEEeChhhc
Confidence 445678888888865 4566667776554321 11222234555599999999999999999998875
No 189
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=47.33 E-value=1.9e+02 Score=26.86 Aligned_cols=76 Identities=18% Similarity=0.301 Sum_probs=54.7
Q ss_pred CeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCC---hHHHHHHHH
Q 015981 182 AVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGL---PEEVLQGVA 258 (397)
Q Consensus 182 ~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~---P~~il~~v~ 258 (397)
.+++++-| .+.+.=.+.++.+.+.|++-+-|+ +.. ++-.+.|+...+..| ..+.|+|+ +.+.-.+++
T Consensus 16 ~~iaV~r~-~~~~~a~~i~~al~~~Gi~~iEit-l~~----~~~~~~I~~l~~~~p----~~~IGAGTVl~~~~a~~a~~ 85 (212)
T PRK05718 16 PVVPVIVI-NKLEDAVPLAKALVAGGLPVLEVT-LRT----PAALEAIRLIAKEVP----EALIGAGTVLNPEQLAQAIE 85 (212)
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHcCCCEEEEe-cCC----ccHHHHHHHHHHHCC----CCEEEEeeccCHHHHHHHHH
Confidence 48999986 566656667888888888888886 332 234566666666655 35678874 888888899
Q ss_pred cCCcEEecc
Q 015981 259 AGVDLFDSA 267 (397)
Q Consensus 259 ~GvD~FD~~ 267 (397)
.|.|.+-+.
T Consensus 86 aGA~FivsP 94 (212)
T PRK05718 86 AGAQFIVSP 94 (212)
T ss_pred cCCCEEECC
Confidence 999988877
No 190
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=47.15 E-value=51 Score=31.64 Aligned_cols=64 Identities=20% Similarity=0.196 Sum_probs=39.5
Q ss_pred HHHHHHhcCCceEEEcCccC----CCchhhHHHHHHHHHcCCCCCCcccc-cCCCChHHHHHHHHcCCcEEecc
Q 015981 199 CAQEVAVRNVSGYWIGGFGL----GESMEERPSLLNAVTDNLPKDWPRMI-CGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 199 sa~~l~~~~~~G~~IgGl~~----ge~~~~~~~~v~~~~~~Lp~~kpr~l-~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
.++++.+.|..-..--|-.. |-.. ...|+.+++.. +-|..+ -|+|+|.|+..++++|+|-.=..
T Consensus 150 ~a~rLed~Gc~aVMPlgsPIGSg~Gl~n---~~~l~~i~e~~--~vpVivdAGIgt~sDa~~AmElGaDgVL~n 218 (267)
T CHL00162 150 LAKHLEDIGCATVMPLGSPIGSGQGLQN---LLNLQIIIENA--KIPVIIDAGIGTPSEASQAMELGASGVLLN 218 (267)
T ss_pred HHHHHHHcCCeEEeeccCcccCCCCCCC---HHHHHHHHHcC--CCcEEEeCCcCCHHHHHHHHHcCCCEEeec
Confidence 36677777766554433332 2221 23444445553 256554 49999999999999999965443
No 191
>PRK13753 dihydropteroate synthase; Provisional
Probab=46.69 E-value=95 Score=30.19 Aligned_cols=78 Identities=12% Similarity=-0.012 Sum_probs=47.0
Q ss_pred CCCC--HHHHHHHHHHHHhcCCceEEEcCccC--CC---c-hhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcC
Q 015981 189 GGSN--IEERKRCAQEVAVRNVSGYWIGGFGL--GE---S-MEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAG 260 (397)
Q Consensus 189 Gg~~--~~lR~~sa~~l~~~~~~G~~IgGl~~--ge---~-~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~G 260 (397)
||.+ .+--.+-++++.+.|.+-+-|||-+. |. + .+|+.+++..+......+.| .-.-..+|.-+-.|++.|
T Consensus 18 Gg~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~vs~eeE~~Rv~pvI~~l~~~~~~-ISIDT~~~~va~~al~aG 96 (279)
T PRK13753 18 ESRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARPVSPADEIRRIAPLLDALSDQMHR-VSIDSFQPETQRYALKRG 96 (279)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCcCCHHHHHHHHHHHHHHHHhCCCc-EEEECCCHHHHHHHHHcC
Confidence 5543 34444445667778999999999774 21 1 13555333322222222223 223456799999999999
Q ss_pred CcEEecc
Q 015981 261 VDLFDSA 267 (397)
Q Consensus 261 vD~FD~~ 267 (397)
+|++-..
T Consensus 97 adiINDV 103 (279)
T PRK13753 97 VGYLNDI 103 (279)
T ss_pred CCEEEeC
Confidence 9988665
No 192
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=46.62 E-value=1.1e+02 Score=26.10 Aligned_cols=85 Identities=18% Similarity=0.091 Sum_probs=45.8
Q ss_pred ecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHH
Q 015981 125 LIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVA 204 (397)
Q Consensus 125 ~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~ 204 (397)
..+||++++...+-++|++..-.-... ....+....+-++ .... . -+.++.||..++.. .+++.
T Consensus 39 ~~s~e~~v~aa~e~~adii~iSsl~~~-------~~~~~~~~~~~L~----~~g~-~-~i~vivGG~~~~~~---~~~l~ 102 (132)
T TIGR00640 39 FQTPEEIARQAVEADVHVVGVSSLAGG-------HLTLVPALRKELD----KLGR-P-DILVVVGGVIPPQD---FDELK 102 (132)
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCchhh-------hHHHHHHHHHHHH----hcCC-C-CCEEEEeCCCChHh---HHHHH
Confidence 479999999999999999866311111 1111222232222 2111 1 24466677554322 24577
Q ss_pred hcCCceEEEcCccCCCchhhHHHHH
Q 015981 205 VRNVSGYWIGGFGLGESMEERPSLL 229 (397)
Q Consensus 205 ~~~~~G~~IgGl~~ge~~~~~~~~v 229 (397)
++|+++|.- .|.+..+..+.+
T Consensus 103 ~~Gvd~~~~----~gt~~~~i~~~l 123 (132)
T TIGR00640 103 EMGVAEIFG----PGTPIPESAIFL 123 (132)
T ss_pred HCCCCEEEC----CCCCHHHHHHHH
Confidence 889999833 445554443333
No 193
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=46.47 E-value=59 Score=34.11 Aligned_cols=66 Identities=17% Similarity=0.296 Sum_probs=40.8
Q ss_pred HHHHHHHhcCCceEEEcCccCCC----------chhhHHHHHHHHHcCCCC-CCccccc--CCCChHHHHHHHHcCCcEE
Q 015981 198 RCAQEVAVRNVSGYWIGGFGLGE----------SMEERPSLLNAVTDNLPK-DWPRMIC--GLGLPEEVLQGVAAGVDLF 264 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~ge----------~~~~~~~~v~~~~~~Lp~-~kpr~l~--G~g~P~~il~~v~~GvD~F 264 (397)
+.++.+.+.|++++.+|+ +.|. ...+ ...+..+.+.... +.| .+. |+.+|.||..|+++|.|..
T Consensus 281 e~a~~l~~aGad~i~vg~-g~gs~~~~r~~~~~g~p~-~~~~~~~~~~~~~~~~~-viadGGi~~~~di~kAla~GA~~v 357 (486)
T PRK05567 281 EAARALIEAGADAVKVGI-GPGSICTTRIVAGVGVPQ-ITAIADAAEAAKKYGIP-VIADGGIRYSGDIAKALAAGASAV 357 (486)
T ss_pred HHHHHHHHcCCCEEEECC-CCCccccceeecCCCcCH-HHHHHHHHHHhccCCCe-EEEcCCCCCHHHHHHHHHhCCCEE
Confidence 345667778999998865 2220 0011 2344444433322 344 345 9999999999999999965
Q ss_pred ec
Q 015981 265 DS 266 (397)
Q Consensus 265 D~ 266 (397)
=.
T Consensus 358 ~~ 359 (486)
T PRK05567 358 ML 359 (486)
T ss_pred EE
Confidence 43
No 194
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=46.20 E-value=61 Score=33.64 Aligned_cols=65 Identities=17% Similarity=0.151 Sum_probs=49.3
Q ss_pred HHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 200 AQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 200 a~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++.+.+.+++.+.|.--+ |.+ +...+.|+++.+..| +.|...=++.++.+...++.+|+|.++..
T Consensus 229 ~~~L~~aG~d~I~vd~a~-g~~-~~~~~~i~~i~~~~~-~~~vi~G~v~t~~~a~~l~~aGad~i~vg 293 (450)
T TIGR01302 229 AEALVKAGVDVIVIDSSH-GHS-IYVIDSIKEIKKTYP-DLDIIAGNVATAEQAKALIDAGADGLRVG 293 (450)
T ss_pred HHHHHHhCCCEEEEECCC-CcH-hHHHHHHHHHHHhCC-CCCEEEEeCCCHHHHHHHHHhCCCEEEEC
Confidence 346677899999997533 444 346778888888876 46665557889999999999999999733
No 195
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=46.01 E-value=74 Score=31.81 Aligned_cols=81 Identities=14% Similarity=0.318 Sum_probs=50.9
Q ss_pred ecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCc----hhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCC
Q 015981 187 IVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGES----MEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGV 261 (397)
Q Consensus 187 iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~----~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~Gv 261 (397)
+.||...+.-.+.++.+.+.+++.+-+++-..... .......++.+.+.+..+.|.+.. |+.+|.++-.+++.|+
T Consensus 228 ~~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~t~e~ae~~l~~ga 307 (353)
T cd04735 228 EEPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSINTPDDALEALETGA 307 (353)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCCCHHHHHHHHHcCC
Confidence 45777766666778888888999888865322110 011223334444444345787765 5678999999999997
Q ss_pred cEEecc
Q 015981 262 DLFDSA 267 (397)
Q Consensus 262 D~FD~~ 267 (397)
|++=..
T Consensus 308 D~V~~g 313 (353)
T cd04735 308 DLVAIG 313 (353)
T ss_pred ChHHHh
Confidence 765433
No 196
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=45.90 E-value=44 Score=31.56 Aligned_cols=58 Identities=24% Similarity=0.392 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHH
Q 015981 194 EERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQ 255 (397)
Q Consensus 194 ~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~ 255 (397)
++-.+.++.+.+.|-|++.||| +.|-+.++..++++.+.+. .+-|.+++ +|++..|..
T Consensus 28 ~~~~ei~~~~~~~GTDaImIGG-S~gvt~~~~~~~v~~ik~~--~~lPvilf-P~~~~~is~ 85 (240)
T COG1646 28 EEADEIAEAAAEAGTDAIMIGG-SDGVTEENVDNVVEAIKER--TDLPVILF-PGSPSGISP 85 (240)
T ss_pred cccHHHHHHHHHcCCCEEEECC-cccccHHHHHHHHHHHHhh--cCCCEEEe-cCChhccCc
Confidence 3445567777888999999999 4566666777888887763 46787776 677765554
No 197
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=45.39 E-value=64 Score=31.08 Aligned_cols=61 Identities=13% Similarity=0.052 Sum_probs=43.5
Q ss_pred hcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHH
Q 015981 205 VRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYH 271 (397)
Q Consensus 205 ~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~ 271 (397)
+.+++.+.++.+. ++++.++++.+... .+.|....|--++.++......|+|.+-...++.
T Consensus 199 ~~gaD~I~ld~~~----~e~l~~~v~~i~~~--~~i~i~asGGIt~~ni~~~a~~Gad~Isvgal~~ 259 (269)
T cd01568 199 EAGADIIMLDNMS----PEELKEAVKLLKGL--PRVLLEASGGITLENIRAYAETGVDVISTGALTH 259 (269)
T ss_pred HcCCCEEEECCCC----HHHHHHHHHHhccC--CCeEEEEECCCCHHHHHHHHHcCCCEEEEcHHHc
Confidence 4678888887654 24455555444332 2567677787799999999999999998776653
No 198
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=45.28 E-value=1.2e+02 Score=29.85 Aligned_cols=70 Identities=16% Similarity=0.058 Sum_probs=47.7
Q ss_pred HHHHHHHhcCCceEEEcCccC--CCchhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHH-HcCCcEEecchh
Q 015981 198 RCAQEVAVRNVSGYWIGGFGL--GESMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGV-AAGVDLFDSAYI 269 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~--ge~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v-~~GvD~FD~~~p 269 (397)
+-++.+.+.|++++.+.|-.. +-+....++.+..+.+.++ .|.+.- |+.+|.++..++ ..|+|.+=...+
T Consensus 151 ~~a~~l~~~G~d~i~vh~r~~~~~~~~~~~~~~i~~i~~~~~--ipvi~nGgI~~~~da~~~l~~~gad~VmigR~ 224 (319)
T TIGR00737 151 EAARIAEDAGAQAVTLHGRTRAQGYSGEANWDIIARVKQAVR--IPVIGNGDIFSPEDAKAMLETTGCDGVMIGRG 224 (319)
T ss_pred HHHHHHHHhCCCEEEEEcccccccCCCchhHHHHHHHHHcCC--CcEEEeCCCCCHHHHHHHHHhhCCCEEEEChh
Confidence 456667778999998876421 1111223567777777765 676654 788999999999 578998776543
No 199
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=45.25 E-value=78 Score=29.57 Aligned_cols=71 Identities=21% Similarity=0.304 Sum_probs=48.6
Q ss_pred HHHHHHHhcCCceEEEcCccCCCc-hhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHc-CCcEEecchhH
Q 015981 198 RCAQEVAVRNVSGYWIGGFGLGES-MEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAA-GVDLFDSAYIY 270 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~ge~-~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~-GvD~FD~~~p~ 270 (397)
+-++.+.+.+++.+.+.+...... ..-..++++.+.+.+ +.|.+.. |+.+|.++..+.+. |+|.+-...+.
T Consensus 153 ~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~--~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al 226 (243)
T cd04731 153 EWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAV--NIPVIASGGAGKPEHFVEAFEEGGADAALAASIF 226 (243)
T ss_pred HHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHH
Confidence 345666778999999987653111 111245566666554 5787765 68899999999997 99988776543
No 200
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.12 E-value=79 Score=29.18 Aligned_cols=39 Identities=23% Similarity=0.313 Sum_probs=28.7
Q ss_pred HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchh
Q 015981 226 PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p 269 (397)
.++++.+.+. .--+++|+.+|.||..+.++|.|++= .||
T Consensus 87 ~~vi~~a~~~----~i~~iPG~~TptEi~~A~~~Ga~~vK-~FP 125 (201)
T PRK06015 87 QELLAAANDS----DVPLLPGAATPSEVMALREEGYTVLK-FFP 125 (201)
T ss_pred HHHHHHHHHc----CCCEeCCCCCHHHHHHHHHCCCCEEE-ECC
Confidence 3556555432 22368999999999999999999865 456
No 201
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=45.10 E-value=1.2e+02 Score=32.03 Aligned_cols=78 Identities=13% Similarity=0.165 Sum_probs=55.4
Q ss_pred eEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCc
Q 015981 183 VFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVD 262 (397)
Q Consensus 183 lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD 262 (397)
+.|+..|-...+ .+-++.+.+.+++-+.|..- .|.+.. ..+.|+++.+..| +.|...=.+.++.+...++++|+|
T Consensus 231 ~Vgaavg~~~~~--~~~~~~l~~ag~d~i~id~a-~G~s~~-~~~~i~~ik~~~~-~~~v~aG~V~t~~~a~~~~~aGad 305 (495)
T PTZ00314 231 LVGAAISTRPED--IERAAALIEAGVDVLVVDSS-QGNSIY-QIDMIKKLKSNYP-HVDIIAGNVVTADQAKNLIDAGAD 305 (495)
T ss_pred EEEEEECCCHHH--HHHHHHHHHCCCCEEEEecC-CCCchH-HHHHHHHHHhhCC-CceEEECCcCCHHHHHHHHHcCCC
Confidence 667777643333 34456777889999988753 355433 3577888888776 455444468899999999999999
Q ss_pred EEe
Q 015981 263 LFD 265 (397)
Q Consensus 263 ~FD 265 (397)
.+.
T Consensus 306 ~I~ 308 (495)
T PTZ00314 306 GLR 308 (495)
T ss_pred EEE
Confidence 996
No 202
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=44.97 E-value=81 Score=33.09 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEec
Q 015981 197 KRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~ 266 (397)
.+.++.+.+.+++.+++..-. |.. ....+.++++.+.+| +.|..+=++.++.+...++..|+|.++.
T Consensus 230 ~e~a~~L~~agvdvivvD~a~-g~~-~~vl~~i~~i~~~~p-~~~vi~g~v~t~e~a~~l~~aGad~i~v 296 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAH-GHS-EGVLDRVREIKAKYP-DVQIIAGNVATAEAARALIEAGADAVKV 296 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCC-Ccc-hhHHHHHHHHHhhCC-CCCEEEeccCCHHHHHHHHHcCCCEEEE
Confidence 455677788899988887532 332 446677888888876 4676666888999999999999999985
No 203
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=44.40 E-value=2.7e+02 Score=25.96 Aligned_cols=121 Identities=13% Similarity=0.159 Sum_probs=62.9
Q ss_pred cChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEee-cCCCCHHHHHHHH----
Q 015981 126 IKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSI-VGGSNIEERKRCA---- 200 (397)
Q Consensus 126 ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~i-qGg~~~~lR~~sa---- 200 (397)
-+|+.+++.....|+|++....+.. . ..++++++++++. +...|+. -.....+.-...+
T Consensus 75 ~~p~~~i~~~~~~Gad~itvH~ea~-----~----~~~~~~l~~ik~~-------G~~~gval~p~t~~e~l~~~l~~~~ 138 (228)
T PTZ00170 75 SNPEKWVDDFAKAGASQFTFHIEAT-----E----DDPKAVARKIREA-------GMKVGVAIKPKTPVEVLFPLIDTDL 138 (228)
T ss_pred CCHHHHHHHHHHcCCCEEEEeccCC-----c----hHHHHHHHHHHHC-------CCeEEEEECCCCCHHHHHHHHccch
Confidence 4699999999999999987764421 1 1145566666542 2334444 3333322221111
Q ss_pred -HHHHhcCC-ceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecch
Q 015981 201 -QEVAVRNV-SGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 201 -~~l~~~~~-~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~ 268 (397)
..+.-+.+ .|+ +|-... ++..+-++.+.+.++. ....+-|--++..+..++..|+|+|-.-.
T Consensus 139 vD~Vl~m~v~pG~--~gq~~~---~~~~~ki~~~~~~~~~-~~I~VdGGI~~~ti~~~~~aGad~iVvGs 202 (228)
T PTZ00170 139 VDMVLVMTVEPGF--GGQSFM---HDMMPKVRELRKRYPH-LNIQVDGGINLETIDIAADAGANVIVAGS 202 (228)
T ss_pred hhhHHhhhcccCC--CCcEec---HHHHHHHHHHHHhccc-CeEEECCCCCHHHHHHHHHcCCCEEEEch
Confidence 11111111 011 121111 1222334444455553 22334466689999999999999997653
No 204
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=44.29 E-value=51 Score=31.42 Aligned_cols=41 Identities=24% Similarity=0.422 Sum_probs=29.3
Q ss_pred HHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecch
Q 015981 226 PSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~ 268 (397)
.+.|+.+.+. + +-|.++= |+++|+|.-.++++|+|-.-+..
T Consensus 164 ~~~I~~I~e~-~-~vpVI~egGI~tpeda~~AmelGAdgVlV~S 205 (248)
T cd04728 164 PYNLRIIIER-A-DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (248)
T ss_pred HHHHHHHHHh-C-CCcEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 3455555554 2 4566553 89999999999999999776553
No 205
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=44.03 E-value=81 Score=29.15 Aligned_cols=39 Identities=18% Similarity=0.338 Sum_probs=29.3
Q ss_pred HHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhH
Q 015981 227 SLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIY 270 (397)
Q Consensus 227 ~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~ 270 (397)
++++.+.+. .-.+++|+.+|.||..|.++|.|++= .||.
T Consensus 92 ~v~~~~~~~----~i~~iPG~~TptEi~~A~~~Ga~~vK-lFPA 130 (204)
T TIGR01182 92 ELAKHAQDH----GIPIIPGVATPSEIMLALELGITALK-LFPA 130 (204)
T ss_pred HHHHHHHHc----CCcEECCCCCHHHHHHHHHCCCCEEE-ECCc
Confidence 566666543 22368899999999999999999875 4563
No 206
>PRK07709 fructose-bisphosphate aldolase; Provisional
Probab=44.00 E-value=94 Score=30.30 Aligned_cols=130 Identities=18% Similarity=0.193 Sum_probs=67.7
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCH--------HHHHH
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNI--------EERKR 198 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~--------~lR~~ 198 (397)
+.+..++..+. |.+-+|. |.-.. + .+.-+++|.+-.+.+-...-.-..=+|.|-|..+. ---.+
T Consensus 89 ~~e~i~~ai~~-GftSVM~--DgS~l--p---~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~pee 160 (285)
T PRK07709 89 SFEKCKEAIDA-GFTSVMI--DASHH--P---FEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAE 160 (285)
T ss_pred CHHHHHHHHHc-CCCEEEE--eCCCC--C---HHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHH
Confidence 45666655444 6666665 32111 1 34444455444444322110001135555443221 01245
Q ss_pred HHHHHHhcCCceEEE--cCccC---CCchhhHHHHHHHHHcCCCCCCcccccCC-CCh-HHHHHHHHcCCcEEecc
Q 015981 199 CAQEVAVRNVSGYWI--GGFGL---GESMEERPSLLNAVTDNLPKDWPRMICGL-GLP-EEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 199 sa~~l~~~~~~G~~I--gGl~~---ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~-g~P-~~il~~v~~GvD~FD~~ 267 (397)
+.+++.+.+++-+++ |-.+. ++ +.-..+.++.+.+.+ +.|..|+|- |.| +++..++.+||-=|-..
T Consensus 161 A~~Fv~~TgvD~LAvaiGt~HG~Y~~~-p~L~~~~L~~I~~~~--~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~ 233 (285)
T PRK07709 161 CKHLVEATGIDCLAPALGSVHGPYKGE-PNLGFAEMEQVRDFT--GVPLVLHGGTGIPTADIEKAISLGTSKINVN 233 (285)
T ss_pred HHHHHHHhCCCEEEEeecccccCcCCC-CccCHHHHHHHHHHH--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 566666778887665 32221 22 223356777777766 589989965 566 67777899998655443
No 207
>PRK00208 thiG thiazole synthase; Reviewed
Probab=43.69 E-value=52 Score=31.40 Aligned_cols=41 Identities=24% Similarity=0.456 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCCCCCcccc-cCCCChHHHHHHHHcCCcEEecch
Q 015981 226 PSLLNAVTDNLPKDWPRMI-CGLGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l-~G~g~P~~il~~v~~GvD~FD~~~ 268 (397)
.+.++.+.+. + +-|.++ -|+++|+|...++++|+|-.-+..
T Consensus 164 ~~~i~~i~e~-~-~vpVIveaGI~tpeda~~AmelGAdgVlV~S 205 (250)
T PRK00208 164 PYNLRIIIEQ-A-DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 205 (250)
T ss_pred HHHHHHHHHh-c-CCeEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 3445555555 2 456554 399999999999999999766553
No 208
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=43.57 E-value=2.5e+02 Score=25.29 Aligned_cols=121 Identities=12% Similarity=0.152 Sum_probs=63.6
Q ss_pred eecChhhH-HHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCC-eEEeecCCCC-HHHHHHHH
Q 015981 124 RLIKPVEY-MEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGA-VFGSIVGGSN-IEERKRCA 200 (397)
Q Consensus 124 ~~ltpe~~-~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~-lf~~iqGg~~-~~lR~~sa 200 (397)
+.++|..+ ++.....|+|++..-... + . ..+++..++.++. +. ++.-+.+-.. .+.-
T Consensus 60 k~~d~~~~~~~~~~~~Gad~i~vh~~~-~----~----~~~~~~i~~~~~~-------g~~~~~~~~~~~t~~~~~---- 119 (206)
T TIGR03128 60 KTMDAGEYEAEQAFAAGADIVTVLGVA-D----D----ATIKGAVKAAKKH-------GKEVQVDLINVKDKVKRA---- 119 (206)
T ss_pred eeccchHHHHHHHHHcCCCEEEEeccC-C----H----HHHHHHHHHHHHc-------CCEEEEEecCCCChHHHH----
Confidence 34567767 777789999988754221 1 1 2344555555431 33 2222233222 2222
Q ss_pred HHHHhcCCceEEEc-CccCCCch-hhHHHHHHHHHcCCCCCCcccc-cCCCChHHHHHHHHcCCcEEecc
Q 015981 201 QEVAVRNVSGYWIG-GFGLGESM-EERPSLLNAVTDNLPKDWPRMI-CGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 201 ~~l~~~~~~G~~Ig-Gl~~ge~~-~~~~~~v~~~~~~Lp~~kpr~l-~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
+.+.+.+++.+.+. |+. +... ....+-++...+.+|. +.+. -|=-++.++..+...|+|.|-..
T Consensus 120 ~~~~~~g~d~v~~~pg~~-~~~~~~~~~~~i~~l~~~~~~--~~i~v~GGI~~~n~~~~~~~Ga~~v~vG 186 (206)
T TIGR03128 120 KELKELGADYIGVHTGLD-EQAKGQNPFEDLQTILKLVKE--ARVAVAGGINLDTIPDVIKLGPDIVIVG 186 (206)
T ss_pred HHHHHcCCCEEEEcCCcC-cccCCCCCHHHHHHHHHhcCC--CcEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 22334466655442 211 1111 1123445555566653 4443 45448999999999999988764
No 209
>PRK08508 biotin synthase; Provisional
Probab=43.43 E-value=89 Score=30.12 Aligned_cols=83 Identities=20% Similarity=0.217 Sum_probs=40.2
Q ss_pred eEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCcc------C---CCchhhHHHHHHHHHcCCCCCCcccccCC-CChH-
Q 015981 183 VFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFG------L---GESMEERPSLLNAVTDNLPKDWPRMICGL-GLPE- 251 (397)
Q Consensus 183 lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~------~---ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~-g~P~- 251 (397)
++|. |...+-|.+.+..+.+++.+-..+.=+. . ..+.++..+++....-.||.-..|.--|- ....
T Consensus 158 I~Gl---GEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~~ 234 (279)
T PRK08508 158 IFGL---GESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGREVVFGE 234 (279)
T ss_pred EEec---CCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChhhhchh
Confidence 5553 3455666667777766655533322221 1 12334555666555566775444444443 1111
Q ss_pred HHHHHHHcCCc-EEecch
Q 015981 252 EVLQGVAAGVD-LFDSAY 268 (397)
Q Consensus 252 ~il~~v~~GvD-~FD~~~ 268 (397)
.-..+...|++ +|-..|
T Consensus 235 ~~~~~~~~g~n~~~~g~~ 252 (279)
T PRK08508 235 RQYEIFEAGANAIVIGDY 252 (279)
T ss_pred hHHHHHhcCCcceeecCc
Confidence 22335566666 444444
No 210
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=43.22 E-value=82 Score=29.19 Aligned_cols=68 Identities=18% Similarity=0.288 Sum_probs=47.3
Q ss_pred HHHHHHHhcCCceEEEcCccC-CCchhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHH-HHHcCCcEEecc
Q 015981 198 RCAQEVAVRNVSGYWIGGFGL-GESMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQ-GVAAGVDLFDSA 267 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~-ge~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~-~v~~GvD~FD~~ 267 (397)
+.++.+.+.+++.+.+.++.. |.......++++.+.+.. +.|.+.. |+.++.++.. +-..|+|.+-..
T Consensus 157 ~~~~~~~~~G~d~i~i~~i~~~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~l~~~gadgV~vg 227 (232)
T TIGR03572 157 EWAREAEQLGAGEILLNSIDRDGTMKGYDLELIKTVSDAV--SIPVIALGGAGSLDDLVEVALEAGASAVAAA 227 (232)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCcCCCCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHHcCCCEEEEe
Confidence 456777788999999988653 111111256677776665 4787766 6889999999 667999977554
No 211
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=42.90 E-value=1e+02 Score=28.81 Aligned_cols=78 Identities=17% Similarity=0.126 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEcCccCCC---chhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 191 SNIEERKRCAQEVAVRNVSGYWIGGFGLGE---SMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 191 ~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge---~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
...+...+.++.+.+.|++.+-+|+..... ..+...++++.+.+..| +.+...+.-....++-.+.+.|+|.+-..
T Consensus 16 ~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~-~~~~~~l~~~~~~~i~~a~~~g~~~i~i~ 94 (265)
T cd03174 16 FSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVP-NVKLQALVRNREKGIERALEAGVDEVRIF 94 (265)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccC-CcEEEEEccCchhhHHHHHhCCcCEEEEE
Confidence 356677788899999999999998865330 00334567777666655 23333454455889999999999977666
Q ss_pred hh
Q 015981 268 YI 269 (397)
Q Consensus 268 ~p 269 (397)
.+
T Consensus 95 ~~ 96 (265)
T cd03174 95 DS 96 (265)
T ss_pred Ee
Confidence 44
No 212
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=42.77 E-value=1.8e+02 Score=28.43 Aligned_cols=131 Identities=16% Similarity=0.073 Sum_probs=71.1
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCH----H----HHHH
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNI----E----ERKR 198 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~----~----lR~~ 198 (397)
+.+...+.. ..|.+-+|. |.-. -..+..+++|.+..+.|-...-.-..=+|.|-|..+. + --.+
T Consensus 86 ~~e~i~~Ai-~~GftSVM~--DgS~-----l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~ 157 (283)
T PRK07998 86 TFEDVKQAV-RAGFTSVMI--DGAA-----LPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEK 157 (283)
T ss_pred CHHHHHHHH-HcCCCEEEE--eCCC-----CCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHH
Confidence 566666665 458888877 3221 1245556666666665543210000135555443221 0 1223
Q ss_pred HHHHHHhcCCceEEE--cCccCC-CchhhHHHHHHHHHcCCCCCCcccccCC-CCh-HHHHHHHHcCCcEEecc
Q 015981 199 CAQEVAVRNVSGYWI--GGFGLG-ESMEERPSLLNAVTDNLPKDWPRMICGL-GLP-EEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 199 sa~~l~~~~~~G~~I--gGl~~g-e~~~~~~~~v~~~~~~Lp~~kpr~l~G~-g~P-~~il~~v~~GvD~FD~~ 267 (397)
+.+++.+.++|-+++ |-.+.- ..+.-..+.++.+.+.+ +.|..++|- |.| +++-.++..||-=+...
T Consensus 158 a~~Fv~~TgvD~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 229 (283)
T PRK07998 158 VKDFVERTGCDMLAVSIGNVHGLEDIPRIDIPLLKRIAEVS--PVPLVIHGGSGIPPEILRSFVNYKVAKVNIA 229 (283)
T ss_pred HHHHHHHhCcCeeehhccccccCCCCCCcCHHHHHHHHhhC--CCCEEEeCCCCCCHHHHHHHHHcCCcEEEEC
Confidence 455555677876665 322211 11222256777777776 579889965 556 66667888998765544
No 213
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=42.63 E-value=1.3e+02 Score=29.96 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=53.2
Q ss_pred ecCCCCHHHHHHHHHHHHhcC-CceEEEcCccCCCc-------------hhhHHHHHHHHHcCCCCCCcccccC-CCChH
Q 015981 187 IVGGSNIEERKRCAQEVAVRN-VSGYWIGGFGLGES-------------MEERPSLLNAVTDNLPKDWPRMICG-LGLPE 251 (397)
Q Consensus 187 iqGg~~~~lR~~sa~~l~~~~-~~G~~IgGl~~ge~-------------~~~~~~~v~~~~~~Lp~~kpr~l~G-~g~P~ 251 (397)
+.||...+.-.+.++.+.+.+ ++.+-|.+-..... .....+.++.+.+.+ +.|.+..| +.+|+
T Consensus 221 ~~~G~~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~~~~ 298 (343)
T cd04734 221 TEGGLSPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAV--DLPVFHAGRIRDPA 298 (343)
T ss_pred cCCCCCHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHc--CCCEEeeCCCCCHH
Confidence 457777766677788888887 78888732111110 011245555666655 47877765 67999
Q ss_pred HHHHHHHcC-CcEEecchh
Q 015981 252 EVLQGVAAG-VDLFDSAYI 269 (397)
Q Consensus 252 ~il~~v~~G-vD~FD~~~p 269 (397)
++..+++.| +|++=..-|
T Consensus 299 ~~~~~l~~~~~D~V~~gR~ 317 (343)
T cd04734 299 EAEQALAAGHADMVGMTRA 317 (343)
T ss_pred HHHHHHHcCCCCeeeecHH
Confidence 999999876 888766544
No 214
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.40 E-value=95 Score=30.32 Aligned_cols=64 Identities=11% Similarity=0.014 Sum_probs=43.8
Q ss_pred HhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHh
Q 015981 204 AVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHL 272 (397)
Q Consensus 204 ~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~ 272 (397)
.+.+++.+.++-++ ++++.++++.+...-| +.|....|=-++..|....+.|||.+....++..
T Consensus 213 ~~~GaD~I~LDn~~----~e~l~~av~~~~~~~~-~i~leAsGGIt~~ni~~ya~tGvD~Isvgsl~~s 276 (288)
T PRK07428 213 LEYGADIIMLDNMP----VDLMQQAVQLIRQQNP-RVKIEASGNITLETIRAVAETGVDYISSSAPITR 276 (288)
T ss_pred HHcCCCEEEECCCC----HHHHHHHHHHHHhcCC-CeEEEEECCCCHHHHHHHHHcCCCEEEEchhhhC
Confidence 35678888887443 4555666654332222 3455556656899999999999999999987753
No 215
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.37 E-value=1.4e+02 Score=27.65 Aligned_cols=79 Identities=15% Similarity=0.188 Sum_probs=55.3
Q ss_pred CeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCC---hHHHHHHHH
Q 015981 182 AVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGL---PEEVLQGVA 258 (397)
Q Consensus 182 ~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~---P~~il~~v~ 258 (397)
.++++|-+- +.+.=...++.+.+-|+.-+-|-= +.+.-.+.++.+.+..| ++|..+.|+|+ ++++-.+++
T Consensus 14 ~vi~vir~~-~~~~a~~~~~al~~~Gi~~iEit~-----~~~~a~~~i~~l~~~~~-~~p~~~vGaGTV~~~~~~~~a~~ 86 (213)
T PRK06552 14 GVVAVVRGE-SKEEALKISLAVIKGGIKAIEVTY-----TNPFASEVIKELVELYK-DDPEVLIGAGTVLDAVTARLAIL 86 (213)
T ss_pred CEEEEEECC-CHHHHHHHHHHHHHCCCCEEEEEC-----CCccHHHHHHHHHHHcC-CCCCeEEeeeeCCCHHHHHHHHH
Confidence 489999875 444445567777777776665531 12334566666666654 35667889995 899999999
Q ss_pred cCCcEEecc
Q 015981 259 AGVDLFDSA 267 (397)
Q Consensus 259 ~GvD~FD~~ 267 (397)
.|.+.+-++
T Consensus 87 aGA~FivsP 95 (213)
T PRK06552 87 AGAQFIVSP 95 (213)
T ss_pred cCCCEEECC
Confidence 999998887
No 216
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=42.13 E-value=1.1e+02 Score=28.44 Aligned_cols=84 Identities=13% Similarity=0.054 Sum_probs=55.4
Q ss_pred CeEEeecCCCCH-HHH----HHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHH
Q 015981 182 AVFGSIVGGSNI-EER----KRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQG 256 (397)
Q Consensus 182 ~lf~~iqGg~~~-~lR----~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~ 256 (397)
+++|+|-=.+.. +.| .+-+++|++.|.+-+++.+....-....+.+++.. ..-| .-..+--++++++.+.|
T Consensus 68 PIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT~R~RP~~~~~~~i~~--~k~~--~~l~MAD~St~ee~l~a 143 (229)
T COG3010 68 PIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDATDRPRPDGDLEELIAR--IKYP--GQLAMADCSTFEEGLNA 143 (229)
T ss_pred CeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecccCCCCcchHHHHHHH--hhcC--CcEEEeccCCHHHHHHH
Confidence 488888644332 232 24577888899999999986533222245556654 1111 12234489999999999
Q ss_pred HHcCCcEEecchh
Q 015981 257 VAAGVDLFDSAYI 269 (397)
Q Consensus 257 v~~GvD~FD~~~p 269 (397)
..+|+|++-++..
T Consensus 144 ~~~G~D~IGTTLs 156 (229)
T COG3010 144 HKLGFDIIGTTLS 156 (229)
T ss_pred HHcCCcEEecccc
Confidence 9999999998853
No 217
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=42.02 E-value=1.6e+02 Score=27.19 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=54.5
Q ss_pred CeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCC---hHHHHHHHH
Q 015981 182 AVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGL---PEEVLQGVA 258 (397)
Q Consensus 182 ~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~---P~~il~~v~ 258 (397)
.++++|-| .+.+.=...++.+.+-|+.-+-|-- +.+.-.+.++.+.+..| ..+.|+|+ +++.-.+++
T Consensus 5 ~vv~Vir~-~~~~~a~~ia~al~~gGi~~iEit~-----~tp~a~~~I~~l~~~~~----~~~vGAGTVl~~e~a~~ai~ 74 (201)
T PRK06015 5 PVIPVLLI-DDVEHAVPLARALAAGGLPAIEITL-----RTPAALDAIRAVAAEVE----EAIVGAGTILNAKQFEDAAK 74 (201)
T ss_pred CEEEEEEc-CCHHHHHHHHHHHHHCCCCEEEEeC-----CCccHHHHHHHHHHHCC----CCEEeeEeCcCHHHHHHHHH
Confidence 48888886 5566556677888888877766631 22334566666665554 46789995 899999999
Q ss_pred cCCcEEecc
Q 015981 259 AGVDLFDSA 267 (397)
Q Consensus 259 ~GvD~FD~~ 267 (397)
.|.+.+-|+
T Consensus 75 aGA~FivSP 83 (201)
T PRK06015 75 AGSRFIVSP 83 (201)
T ss_pred cCCCEEECC
Confidence 999999887
No 218
>PTZ00413 lipoate synthase; Provisional
Probab=41.88 E-value=1.3e+02 Score=30.80 Aligned_cols=77 Identities=12% Similarity=0.096 Sum_probs=55.0
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEcCccC----CCchhhHHHHHHHHHcCCCCCCcccccC--CCChHHHHHHHHcCCcEE
Q 015981 191 SNIEERKRCAQEVAVRNVSGYWIGGFGL----GESMEERPSLLNAVTDNLPKDWPRMICG--LGLPEEVLQGVAAGVDLF 264 (397)
Q Consensus 191 ~~~~lR~~sa~~l~~~~~~G~~IgGl~~----ge~~~~~~~~v~~~~~~Lp~~kpr~l~G--~g~P~~il~~v~~GvD~F 264 (397)
.+++.-.+.|+.+.++++.-.+|..... ....+.+.+.|+++.+..|.-+.=.+.| .|+...+-.+.+.|+|.|
T Consensus 177 lD~eEp~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG~dvy 256 (398)
T PTZ00413 177 LDPNEPEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSPLSVY 256 (398)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcCCCEE
Confidence 4778888888888888887444433211 1123556788888887777655556678 779999999999999998
Q ss_pred ecc
Q 015981 265 DSA 267 (397)
Q Consensus 265 D~~ 267 (397)
-.-
T Consensus 257 nHN 259 (398)
T PTZ00413 257 AHN 259 (398)
T ss_pred ecc
Confidence 654
No 219
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=41.78 E-value=3e+02 Score=27.14 Aligned_cols=84 Identities=17% Similarity=0.147 Sum_probs=52.3
Q ss_pred CCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccC-------CCch-hhHHHHHHHHHcCCCCCCcccc---cCCCC
Q 015981 181 GAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGL-------GESM-EERPSLLNAVTDNLPKDWPRMI---CGLGL 249 (397)
Q Consensus 181 ~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~-------ge~~-~~~~~~v~~~~~~Lp~~kpr~l---~G~g~ 249 (397)
..+++.|-|. ..+.-.++++.+.+.+++++-|---+. |.+. +...++++++.+.+ +.|..+ ..+..
T Consensus 100 ~pvi~si~g~-~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~--~iPv~vKl~p~~~~ 176 (325)
T cd04739 100 IPVIASLNGV-SAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV--TIPVAVKLSPFFSA 176 (325)
T ss_pred CeEEEEeCCC-CHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc--CCCEEEEcCCCccC
Confidence 3578888664 555556778888777888876632111 1111 23467788887765 467654 23345
Q ss_pred hHHHHHH-HHcCCcEEecc
Q 015981 250 PEEVLQG-VAAGVDLFDSA 267 (397)
Q Consensus 250 P~~il~~-v~~GvD~FD~~ 267 (397)
..++..+ .+.|+|-+...
T Consensus 177 ~~~~a~~l~~~Gadgi~~~ 195 (325)
T cd04739 177 LAHMAKQLDAAGADGLVLF 195 (325)
T ss_pred HHHHHHHHHHcCCCeEEEE
Confidence 6667665 57899998765
No 220
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=41.74 E-value=53 Score=30.21 Aligned_cols=40 Identities=23% Similarity=0.396 Sum_probs=28.5
Q ss_pred HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhH
Q 015981 226 PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIY 270 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~ 270 (397)
.++++.+.+. .--+++|+.+|.||..+.++|.|++= .||.
T Consensus 91 ~~v~~~~~~~----~i~~iPG~~TptEi~~A~~~G~~~vK-~FPA 130 (196)
T PF01081_consen 91 PEVIEYAREY----GIPYIPGVMTPTEIMQALEAGADIVK-LFPA 130 (196)
T ss_dssp HHHHHHHHHH----TSEEEEEESSHHHHHHHHHTT-SEEE-ETTT
T ss_pred HHHHHHHHHc----CCcccCCcCCHHHHHHHHHCCCCEEE-Eecc
Confidence 4566666532 22268899999999999999999875 3564
No 221
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=41.73 E-value=3.4e+02 Score=26.38 Aligned_cols=79 Identities=19% Similarity=0.211 Sum_probs=52.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEcCccCCCch----------hhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHH
Q 015981 189 GGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESM----------EERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGV 257 (397)
Q Consensus 189 Gg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~----------~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v 257 (397)
||...+.-.+.++.+.+.+++.+.+.+-...... ....+.++.+.+.+ +.|...- |+.+|.++..++
T Consensus 223 ~g~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~--~iPVi~~Ggi~t~~~a~~~l 300 (327)
T cd02803 223 GGLTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAV--KIPVIAVGGIRDPEVAEEIL 300 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHC--CCCEEEeCCCCCHHHHHHHH
Confidence 5566676677788888889988877654321111 12245555566655 4676654 666799999999
Q ss_pred Hc-CCcEEecchh
Q 015981 258 AA-GVDLFDSAYI 269 (397)
Q Consensus 258 ~~-GvD~FD~~~p 269 (397)
+. |+|++=..-+
T Consensus 301 ~~g~aD~V~igR~ 313 (327)
T cd02803 301 AEGKADLVALGRA 313 (327)
T ss_pred HCCCCCeeeecHH
Confidence 98 7998765544
No 222
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=41.58 E-value=3.2e+02 Score=26.09 Aligned_cols=121 Identities=13% Similarity=0.130 Sum_probs=71.5
Q ss_pred ecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHH
Q 015981 125 LIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVA 204 (397)
Q Consensus 125 ~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~ 204 (397)
....|++++..+..|.|-++.. |. |. +....|.+.|.+.. -.++..+... ..+.|.+.+....
T Consensus 103 ~~G~e~f~~~~~~aGvdGviip-DL-p~-----------ee~~~~~~~~~~~g---l~~I~lvap~-t~~eri~~i~~~s 165 (258)
T PRK13111 103 QYGVERFAADAAEAGVDGLIIP-DL-PP-----------EEAEELRAAAKKHG---LDLIFLVAPT-TTDERLKKIASHA 165 (258)
T ss_pred hcCHHHHHHHHHHcCCcEEEEC-CC-CH-----------HHHHHHHHHHHHcC---CcEEEEeCCC-CCHHHHHHHHHhC
Confidence 4578999999999999999886 32 21 23345555554321 1133334443 3455666555553
Q ss_pred hcCCceEEEcCcc-CCC---chhhHHHHHHHHHcCCCCCCcccc-cCCCChHHHHHHHHcCCcEEecc
Q 015981 205 VRNVSGYWIGGFG-LGE---SMEERPSLLNAVTDNLPKDWPRMI-CGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 205 ~~~~~G~~IgGl~-~ge---~~~~~~~~v~~~~~~Lp~~kpr~l-~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
.++ -|.++-.+ .|. ......+.++.+.+.. +.|..+ +|+.+|.++..+... +|.+-..
T Consensus 166 -~gf-IY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~--~~pv~vGfGI~~~e~v~~~~~~-ADGviVG 228 (258)
T PRK13111 166 -SGF-VYYVSRAGVTGARSADAADLAELVARLKAHT--DLPVAVGFGISTPEQAAAIAAV-ADGVIVG 228 (258)
T ss_pred -CCc-EEEEeCCCCCCcccCCCccHHHHHHHHHhcC--CCcEEEEcccCCHHHHHHHHHh-CCEEEEc
Confidence 233 33333322 121 2234566777777643 578765 688899999999875 8865544
No 223
>TIGR01496 DHPS dihydropteroate synthase. This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.
Probab=41.22 E-value=1.3e+02 Score=28.82 Aligned_cols=85 Identities=19% Similarity=0.133 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhcCCceEEEcCccCCC-----ch-hhH---HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEE
Q 015981 194 EERKRCAQEVAVRNVSGYWIGGFGLGE-----SM-EER---PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLF 264 (397)
Q Consensus 194 ~lR~~sa~~l~~~~~~G~~IgGl~~ge-----~~-~~~---~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~F 264 (397)
+.-.+-+++..+.|.+-+-|||-+... +. +|+ ..+|+.+.+.. +.|. -.-..+|.-+-.|++.|+|++
T Consensus 23 ~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~--~~pl-siDT~~~~vi~~al~~G~~iI 99 (257)
T TIGR01496 23 DKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP--DVPI-SVDTYRAEVARAALEAGADII 99 (257)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CCeE-EEeCCCHHHHHHHHHcCCCEE
Confidence 333344555667788899998765411 22 232 33333333222 4553 345778999999999999999
Q ss_pred ecchhH-------Hhhhcceeecc
Q 015981 265 DSAYIY-------HLTIGGFALTF 281 (397)
Q Consensus 265 D~~~p~-------~~a~~G~al~f 281 (397)
.+..-. ..+++|.+++.
T Consensus 100 Nsis~~~~~~~~~l~~~~~~~vV~ 123 (257)
T TIGR01496 100 NDVSGGQDPAMLEVAAEYGVPLVL 123 (257)
T ss_pred EECCCCCCchhHHHHHHcCCcEEE
Confidence 876332 24456655553
No 224
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.87 E-value=97 Score=28.76 Aligned_cols=39 Identities=10% Similarity=0.078 Sum_probs=29.6
Q ss_pred HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchh
Q 015981 226 PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p 269 (397)
.++++++.+. ..-+++|+.+|.++..+.+.|+|++=. ||
T Consensus 99 ~~v~~~~~~~----~i~~iPG~~T~~E~~~A~~~Gad~vkl-FP 137 (213)
T PRK06552 99 RETAKICNLY----QIPYLPGCMTVTEIVTALEAGSEIVKL-FP 137 (213)
T ss_pred HHHHHHHHHc----CCCEECCcCCHHHHHHHHHcCCCEEEE-CC
Confidence 3566655532 223689999999999999999998874 77
No 225
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.73 E-value=89 Score=30.34 Aligned_cols=60 Identities=13% Similarity=0.098 Sum_probs=40.5
Q ss_pred HhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHH
Q 015981 204 AVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYH 271 (397)
Q Consensus 204 ~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~ 271 (397)
.+.+++.+.++.+ +++++.+++ +.++...|....|=-++.++......|+|.+-..++|.
T Consensus 205 ~~~gaDyI~lD~~----~~e~l~~~~----~~~~~~i~i~AiGGIt~~ni~~~a~~Gvd~IAvg~l~~ 264 (277)
T PRK08072 205 VAAGADIIMFDNR----TPDEIREFV----KLVPSAIVTEASGGITLENLPAYGGTGVDYISLGFLTH 264 (277)
T ss_pred HHcCCCEEEECCC----CHHHHHHHH----HhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhc
Confidence 3578888877532 233444444 34432344445565599999999999999999998874
No 226
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.14 E-value=99 Score=28.74 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=38.1
Q ss_pred HHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHH
Q 015981 198 RCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYH 271 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~ 271 (397)
+.++...+.|.+=+..-| -+ .++++.+.+. .--+++|+.+|.++..+.++|+|++=- ||..
T Consensus 78 ~~a~~a~~aGA~FivsP~----~~----~~vi~~a~~~----~i~~iPG~~TptEi~~a~~~Ga~~vKl-FPa~ 138 (212)
T PRK05718 78 EQLAQAIEAGAQFIVSPG----LT----PPLLKAAQEG----PIPLIPGVSTPSELMLGMELGLRTFKF-FPAE 138 (212)
T ss_pred HHHHHHHHcCCCEEECCC----CC----HHHHHHHHHc----CCCEeCCCCCHHHHHHHHHCCCCEEEE-ccch
Confidence 334555556654443332 22 2455555541 222578999999999999999998643 7754
No 227
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=39.94 E-value=60 Score=30.76 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=27.9
Q ss_pred HHHHHHcCCCCCCcccc-cCCCChHHHHHHHHcCCcEEec
Q 015981 228 LLNAVTDNLPKDWPRMI-CGLGLPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 228 ~v~~~~~~Lp~~kpr~l-~G~g~P~~il~~v~~GvD~FD~ 266 (397)
.++.+++.. +-|..+ -|+|+|.+-..+.++|+|-+=-
T Consensus 173 ~l~iiie~a--~VPviVDAGiG~pSdAa~aMElG~DaVL~ 210 (262)
T COG2022 173 NLEIIIEEA--DVPVIVDAGIGTPSDAAQAMELGADAVLL 210 (262)
T ss_pred HHHHHHHhC--CCCEEEeCCCCChhHHHHHHhcccceeeh
Confidence 344445555 567766 5999999999999999996543
No 228
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=39.87 E-value=73 Score=31.27 Aligned_cols=111 Identities=15% Similarity=0.208 Sum_probs=65.9
Q ss_pred hhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHhcCC
Q 015981 129 VEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNV 208 (397)
Q Consensus 129 e~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~~~~ 208 (397)
++.+++....+++++..- -..| . +|.++..+. ...+++.| + ..+ -++.+.+.|+
T Consensus 77 ~~~~~~~~~~~v~~v~~~-~g~p----~-----------~~i~~lk~~---g~~v~~~v-~--s~~----~a~~a~~~Ga 130 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTG-AGNP----G-----------KYIPRLKEN---GVKVIPVV-A--SVA----LAKRMEKAGA 130 (307)
T ss_pred HHHHHHHHhCCCCEEEEc-CCCc----H-----------HHHHHHHHc---CCEEEEEc-C--CHH----HHHHHHHcCC
Confidence 567787788899998642 1111 1 122222111 12366655 2 222 2355667799
Q ss_pred ceEEEcCccCC-Cc-hhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecc
Q 015981 209 SGYWIGGFGLG-ES-MEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 209 ~G~~IgGl~~g-e~-~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~ 267 (397)
+++.+-|...| .. ......++..+.+.+ +.|.+.- |++++.++..+..+|+|-+=.-
T Consensus 131 D~Ivv~g~eagGh~g~~~~~~ll~~v~~~~--~iPviaaGGI~~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 131 DAVIAEGMESGGHIGELTTMALVPQVVDAV--SIPVIAAGGIADGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred CEEEEECcccCCCCCCCcHHHHHHHHHHHh--CCCEEEECCCCCHHHHHHHHHcCCCEeecc
Confidence 99988554321 11 011355666666655 3677665 7999999999999999976554
No 229
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=39.60 E-value=1.2e+02 Score=30.46 Aligned_cols=43 Identities=26% Similarity=0.491 Sum_probs=28.1
Q ss_pred HHHHHHHHcCCCCCCcccc-cC-----------CCChHHHHHH----HHcCCcEEecch
Q 015981 226 PSLLNAVTDNLPKDWPRMI-CG-----------LGLPEEVLQG----VAAGVDLFDSAY 268 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l-~G-----------~g~P~~il~~----v~~GvD~FD~~~ 268 (397)
.++|+++.+..+++.|.-+ +. --++.+.+.. .+.|+|+++.+-
T Consensus 198 ~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~~~~e~~~~~~~l~~~gvd~i~vs~ 256 (361)
T cd04747 198 AEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLADTPDELEALLAPLVDAGVDIFHCST 256 (361)
T ss_pred HHHHHHHHHHcCCCCeEEEEECcccccccccCCCCCHHHHHHHHHHHHHcCCCEEEecC
Confidence 5677777788877776432 11 1256665554 468999999864
No 230
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=39.29 E-value=76 Score=31.39 Aligned_cols=66 Identities=21% Similarity=0.216 Sum_probs=41.2
Q ss_pred HHHHHhcCCceEEEcCccC----CCchhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecc
Q 015981 200 AQEVAVRNVSGYWIGGFGL----GESMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 200 a~~l~~~~~~G~~IgGl~~----ge~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++.+.+.++|++++-|..- |.+......++..+.+.++ .|...- |+++..+|..+..+|.|-+-.-
T Consensus 149 A~~a~~~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~~--iPViaAGGI~dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 149 ARKAAKAGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAVD--IPVIAAGGIADGRGIAAALALGADGVQMG 219 (330)
T ss_dssp HHHHHHTT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH-S--S-EEEESS--SHHHHHHHHHCT-SEEEES
T ss_pred HHHhhhcCCCEEEEeccccCCCCCccccceeeHHHHHhhhcC--CcEEEecCcCCHHHHHHHHHcCCCEeecC
Confidence 4556678999999887653 3122235667777777765 676655 8999999999999999977543
No 231
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=38.54 E-value=1e+02 Score=28.35 Aligned_cols=68 Identities=12% Similarity=0.112 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCceEEEcCccC-CCchhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecc
Q 015981 198 RCAQEVAVRNVSGYWIGGFGL-GESMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~-ge~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~ 267 (397)
+.++.+.+.+++++.+..+.. |.....-.++++.+.+.. +.|...- |+.++.++..+.+.|+|-+=..
T Consensus 149 ~~~~~~~~~g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~~--~ipvia~GGi~~~~di~~~~~~Gadgv~ig 218 (230)
T TIGR00007 149 ELAKRLEELGLEGIIYTDISRDGTLSGPNFELTKELVKAV--NVPVIASGGVSSIDDLIALKKLGVYGVIVG 218 (230)
T ss_pred HHHHHHHhCCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEe
Confidence 456677788999888766542 111111245555555553 4676654 8999999999999999976554
No 232
>PRK07084 fructose-bisphosphate aldolase; Provisional
Probab=38.47 E-value=4.1e+02 Score=26.41 Aligned_cols=68 Identities=18% Similarity=0.254 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCceEEE--cCccC---CC----chhhHHHHHHHHHcCCCCCCcccccCCC-Ch----------------
Q 015981 197 KRCAQEVAVRNVSGYWI--GGFGL---GE----SMEERPSLLNAVTDNLPKDWPRMICGLG-LP---------------- 250 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~I--gGl~~---ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g-~P---------------- 250 (397)
.++.+++.+.+++-+++ |-.+. +. .+.-..++++.+.+.++ +.|..|+|.. .|
T Consensus 167 eeA~~Fv~~TgvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~-~vPLVLHGgSg~~~~~~~~~~~~g~~~~~ 245 (321)
T PRK07084 167 EEVEDFVKKTGVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIP-GFPIVLHGSSSVPQEYVKTINEYGGKLKD 245 (321)
T ss_pred HHHHHHHHHhCCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcC-CCCEEEeCCCCCcHHHHHHHHHhcCcccc
Confidence 45566666678887665 33321 10 12334678888877775 5888899765 44
Q ss_pred ------HHHHHHHHcCCcEEe
Q 015981 251 ------EEVLQGVAAGVDLFD 265 (397)
Q Consensus 251 ------~~il~~v~~GvD~FD 265 (397)
+++..||.+||-=|-
T Consensus 246 ~~Gi~~e~~~kai~~GI~KIN 266 (321)
T PRK07084 246 AIGIPEEQLRKAAKSAVCKIN 266 (321)
T ss_pred CCCCCHHHHHHHHHcCCceec
Confidence 666677777765443
No 233
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.31 E-value=85 Score=30.77 Aligned_cols=62 Identities=10% Similarity=0.007 Sum_probs=41.9
Q ss_pred HhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhh
Q 015981 204 AVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLT 273 (397)
Q Consensus 204 ~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a 273 (397)
.+.+++.+.+..+ +++++.+.++ .++.....-..|=-++..|..-...|||.+...++|..+
T Consensus 222 ~~aGaDiImLDnm----spe~l~~av~----~~~~~~~lEaSGGIt~~ni~~yA~tGVD~IS~galthsa 283 (294)
T PRK06978 222 LAHGAQSVLLDNF----TLDMMREAVR----VTAGRAVLEVSGGVNFDTVRAFAETGVDRISIGALTKDV 283 (294)
T ss_pred HHcCCCEEEECCC----CHHHHHHHHH----hhcCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCC
Confidence 3457777777643 3455555554 344322223557779999999999999999999887544
No 234
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.29 E-value=82 Score=30.81 Aligned_cols=61 Identities=11% Similarity=0.025 Sum_probs=42.2
Q ss_pred HHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHH
Q 015981 203 VAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYH 271 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~ 271 (397)
..+.+++.+.+..+ ++++..+.++ .++.....-..|--++..|..-...|||.+.+.++|.
T Consensus 213 a~~agaDiImLDnm----spe~l~~av~----~~~~~~~leaSGGI~~~ni~~yA~tGVD~Is~galth 273 (290)
T PRK06559 213 AAAAGADIIMLDNM----SLEQIEQAIT----LIAGRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTH 273 (290)
T ss_pred HHHcCCCEEEECCC----CHHHHHHHHH----HhcCceEEEEECCCCHHHHHHHHhcCCCEEEeCcccc
Confidence 34567777777643 4455555554 3343233335677799999999999999999998874
No 235
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=38.27 E-value=87 Score=30.51 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=43.8
Q ss_pred HHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhh
Q 015981 203 VAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLT 273 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a 273 (397)
..+.+++.+.+..+ ++++..+.+. .++.....-..|=-++..|..-...|||.+.+.++|..+
T Consensus 209 a~~~gaDiImLDn~----s~e~l~~av~----~~~~~~~leaSGgI~~~ni~~yA~tGVD~Is~galths~ 271 (281)
T PRK06543 209 VLAAGVDTIMLDNF----SLDDLREGVE----LVDGRAIVEASGNVNLNTVGAIASTGVDVISVGALTHSV 271 (281)
T ss_pred HHhcCCCEEEECCC----CHHHHHHHHH----HhCCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCC
Confidence 34567788877654 3455555554 334333334567779999999999999999999877544
No 236
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=38.18 E-value=1e+02 Score=28.36 Aligned_cols=69 Identities=12% Similarity=0.052 Sum_probs=46.0
Q ss_pred HHHHHHHhcCCceEEEcCccC-CCchhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecch
Q 015981 198 RCAQEVAVRNVSGYWIGGFGL-GESMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~-ge~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~ 268 (397)
+-++.+.+.+++++.+.++.. |.....-.++++.+.+.. +.|.+.. |+.++.++..+.+.|+|-+=...
T Consensus 150 ~~~~~~~~~ga~~iii~~~~~~g~~~g~~~~~i~~i~~~~--~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~ 220 (234)
T cd04732 150 ELAKRFEELGVKAIIYTDISRDGTLSGPNFELYKELAAAT--GIPVIASGGVSSLDDIKALKELGVAGVIVGK 220 (234)
T ss_pred HHHHHHHHcCCCEEEEEeecCCCccCCCCHHHHHHHHHhc--CCCEEEecCCCCHHHHHHHHHCCCCEEEEeH
Confidence 345667778899998877642 111111245566665554 4676654 79999999999999999776553
No 237
>PRK03892 ribonuclease P protein component 3; Provisional
Probab=38.03 E-value=2.6e+02 Score=26.04 Aligned_cols=112 Identities=13% Similarity=0.109 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHH-hcCCceEEEcCccCCCchhhHHHHHHHHHcCC
Q 015981 158 RNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVA-VRNVSGYWIGGFGLGESMEERPSLLNAVTDNL 236 (397)
Q Consensus 158 r~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~-~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~L 236 (397)
|-+.+-+....|.++..=. .=-++.+..+.+.-++=++++. +.+++|.-|- .+++.+....|. ..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~d~~~l~~~yg~~gv~i~----~~np~~l~~~V~----k~ 80 (216)
T PRK03892 15 RSEEAYELAKEWFDEVVFT------KKLVLEDSPDFGSLKEELKELKKEYGKVAILLV----TPKPSLIREVKQ----RF 80 (216)
T ss_pred ccHHHHHHHHHHhhheEEE------EEEeccCCCChhhhHHHHHHHHHhcCcceEEEe----cCCHHHHHHHHH----hc
Confidence 4466778888999875210 0112233344444444445554 3566665552 355555555554 33
Q ss_pred CCCCcccccCCCChHHHHHHHHcCCcEEecc------------hhHHhhhcceeecccCCc
Q 015981 237 PKDWPRMICGLGLPEEVLQGVAAGVDLFDSA------------YIYHLTIGGFALTFPLDR 285 (397)
Q Consensus 237 p~~kpr~l~G~g~P~~il~~v~~GvD~FD~~------------~p~~~a~~G~al~f~~~~ 285 (397)
.....++ --|+..-.=.+++.|||+.-.+ .+-.+|++|.|+-|+|.+
T Consensus 81 -~~~vv~V-~GGd~~vNR~AvE~~VDVL~~P~~~Rkd~g~dHVLAKlAa~n~VAIe~~L~p 139 (216)
T PRK03892 81 -LNYLIYV-QGGDLRVNRYAIERGVDAIISPWVGRKDPGIDHVLARMAAKRGVAIGFSLSP 139 (216)
T ss_pred -cceEEEE-ECCcHHHHHHHHhcccceeecccccCcCCCccHHHHHHHHHcCeEEEEecHH
Confidence 2222233 3356666666788899996333 445567899998876543
No 238
>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein. This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.
Probab=37.77 E-value=47 Score=31.19 Aligned_cols=57 Identities=23% Similarity=0.351 Sum_probs=38.7
Q ss_pred HHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCc
Q 015981 197 KRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVD 262 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD 262 (397)
.+.++.+.+.+.+++.||| +.|.+.+.+.++++.+... ..|..|+ +|++..|. .|+|
T Consensus 17 ~~~~~~~~~~gtdai~vGG-S~~vt~~~~~~~v~~ik~~---~lPvilf-p~~~~~i~----~~aD 73 (223)
T TIGR01768 17 DEIAKAAAESGTDAILIGG-SQGVTYEKTDTLIEALRRY---GLPIILF-PSNPTNVS----RDAD 73 (223)
T ss_pred HHHHHHHHhcCCCEEEEcC-CCcccHHHHHHHHHHHhcc---CCCEEEe-CCCccccC----cCCC
Confidence 3456777888999999999 4466666677777777642 3787775 46665443 4555
No 239
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=36.99 E-value=2e+02 Score=27.41 Aligned_cols=84 Identities=20% Similarity=0.181 Sum_probs=54.9
Q ss_pred CeEEeecCCC-CHHHHHHHHHHHHhcCCceEEEcCccC--------------------CCchhhHHHHHHHHHcCCCCCC
Q 015981 182 AVFGSIVGGS-NIEERKRCAQEVAVRNVSGYWIGGFGL--------------------GESMEERPSLLNAVTDNLPKDW 240 (397)
Q Consensus 182 ~lf~~iqGg~-~~~lR~~sa~~l~~~~~~G~~IgGl~~--------------------ge~~~~~~~~v~~~~~~Lp~~k 240 (397)
.+++-+.-|+ +.+.=.+.++.+.+.|++-+-|| +++ |.+.+...++++++.+..+ +.
T Consensus 11 ~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElG-iPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~-~~ 88 (256)
T TIGR00262 11 AFIPFVTAGDPTLETSLEIIKTLIEAGADALELG-VPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHP-NI 88 (256)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEC-CCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CC
Confidence 4666665444 56656677788888888888775 443 3333445566666665422 57
Q ss_pred cccccCCCCh------HH-HHHHHHcCCcEEecc
Q 015981 241 PRMICGLGLP------EE-VLQGVAAGVDLFDSA 267 (397)
Q Consensus 241 pr~l~G~g~P------~~-il~~v~~GvD~FD~~ 267 (397)
|..+|+..+| .. +-.+.+.|+|.+-..
T Consensus 89 plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviip 122 (256)
T TIGR00262 89 PIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVA 122 (256)
T ss_pred CEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEEC
Confidence 8778889998 44 666778999975433
No 240
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=36.87 E-value=4.9e+02 Score=26.78 Aligned_cols=123 Identities=19% Similarity=0.229 Sum_probs=65.6
Q ss_pred ecChh--hHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHH
Q 015981 125 LIKPV--EYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQE 202 (397)
Q Consensus 125 ~ltpe--~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~ 202 (397)
..+++ +-++..-.-|+|+++. |..... + +.+...++|+++.. ++...+.|-|. . .+.++.
T Consensus 149 g~~~~~~~~v~~lv~aGvDvI~i--D~a~g~-~-----~~~~~~v~~ik~~~---p~~~vi~g~V~---T----~e~a~~ 210 (404)
T PRK06843 149 SIDIDTIERVEELVKAHVDILVI--DSAHGH-S-----TRIIELVKKIKTKY---PNLDLIAGNIV---T----KEAALD 210 (404)
T ss_pred eCCHHHHHHHHHHHhcCCCEEEE--ECCCCC-C-----hhHHHHHHHHHhhC---CCCcEEEEecC---C----HHHHHH
Confidence 34565 4455556679999876 443322 1 23444566665421 11011233332 1 234566
Q ss_pred HHhcCCceEEEcCccCCC----------chhhHHHHHHHHHcCCC-CCCccccc-CCCChHHHHHHHHcCCcEEecc
Q 015981 203 VAVRNVSGYWIGGFGLGE----------SMEERPSLLNAVTDNLP-KDWPRMIC-GLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~ge----------~~~~~~~~v~~~~~~Lp-~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~ 267 (397)
+.+.|++++.+| .+.|. ...++ ..+..+.+.+. .+.|.+.- |+.+|.+|..|+++|.|..=.-
T Consensus 211 l~~aGaD~I~vG-~g~Gs~c~tr~~~g~g~p~l-tai~~v~~~~~~~~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 211 LISVGADCLKVG-IGPGSICTTRIVAGVGVPQI-TAICDVYEVCKNTNICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred HHHcCCCEEEEC-CCCCcCCcceeecCCCCChH-HHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 777899998774 32211 01121 22222222221 13565554 7999999999999999965543
No 241
>TIGR02708 L_lactate_ox L-lactate oxidase. Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.
Probab=36.75 E-value=48 Score=33.55 Aligned_cols=40 Identities=18% Similarity=0.224 Sum_probs=33.1
Q ss_pred HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 226 PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++.|+++.+..+ .|..+=|++++++...+++.|||.+|.+
T Consensus 217 w~~i~~l~~~~~--~PvivKGv~~~eda~~a~~~Gvd~I~VS 256 (367)
T TIGR02708 217 PRDIEEIAGYSG--LPVYVKGPQCPEDADRALKAGASGIWVT 256 (367)
T ss_pred HHHHHHHHHhcC--CCEEEeCCCCHHHHHHHHHcCcCEEEEC
Confidence 455777776653 6888889999999999999999998765
No 242
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]
Probab=36.21 E-value=1.5e+02 Score=32.57 Aligned_cols=77 Identities=22% Similarity=0.194 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccC---CC-ChHHHHHHHHcCCcEEec
Q 015981 191 SNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICG---LG-LPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 191 ~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G---~g-~P~~il~~v~~GvD~FD~ 266 (397)
++.+.-...++++.+++..-..|--+..-..++.-.-+|.++.+..| |.|.|++. .| ....++.|...|.|+.|.
T Consensus 715 Y~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~P-dlPiHvHtHDtsGagVAsMlaca~AGADVVDv 793 (1176)
T KOG0369|consen 715 YNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFP-DLPIHVHTHDTSGAGVASMLACALAGADVVDV 793 (1176)
T ss_pred ccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCC-CCceEEeccCCccHHHHHHHHHHHcCCceeee
Confidence 45566677889999888776666554433333334456677788887 79988762 22 367899999999999997
Q ss_pred ch
Q 015981 267 AY 268 (397)
Q Consensus 267 ~~ 268 (397)
+-
T Consensus 794 A~ 795 (1176)
T KOG0369|consen 794 AV 795 (1176)
T ss_pred ec
Confidence 63
No 243
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain. 4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate
Probab=36.09 E-value=1.6e+02 Score=27.88 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=49.1
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEcCc-----------cCCCchhhHHHHHHHHHcCCCCCCccc--ccCCCChHHHHHHH
Q 015981 191 SNIEERKRCAQEVAVRNVSGYWIGGF-----------GLGESMEERPSLLNAVTDNLPKDWPRM--ICGLGLPEEVLQGV 257 (397)
Q Consensus 191 ~~~~lR~~sa~~l~~~~~~G~~IgGl-----------~~ge~~~~~~~~v~~~~~~Lp~~kpr~--l~G~g~P~~il~~v 257 (397)
...+...+.++.+.+.|++-+-+|.. ...++. .+.++.+.+..|.-+-.. ..+.+.+.++-.+.
T Consensus 19 ~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~---~e~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 95 (263)
T cd07943 19 FTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTD---EEYLEAAAEALKQAKLGVLLLPGIGTVDDLKMAA 95 (263)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCCh---HHHHHHHHHhccCCEEEEEecCCccCHHHHHHHH
Confidence 45677778888899999988777721 112232 345555555555433322 23688999999999
Q ss_pred HcCCcEEecch
Q 015981 258 AAGVDLFDSAY 268 (397)
Q Consensus 258 ~~GvD~FD~~~ 268 (397)
+.|+|.+-...
T Consensus 96 ~~g~~~iri~~ 106 (263)
T cd07943 96 DLGVDVVRVAT 106 (263)
T ss_pred HcCCCEEEEEe
Confidence 99999765443
No 244
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=35.89 E-value=1.1e+02 Score=28.82 Aligned_cols=68 Identities=22% Similarity=0.289 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCceEEEcCccC-CCchhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcC-CcEEecc
Q 015981 198 RCAQEVAVRNVSGYWIGGFGL-GESMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAG-VDLFDSA 267 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~-ge~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~G-vD~FD~~ 267 (397)
+-++.+.+.+++.+.+-++.. |....--.++++.+.+.. +.|.+.. |+.+|.++..+...| +|.+-..
T Consensus 159 ~~~~~l~~~G~~~iivt~i~~~g~~~g~~~~~~~~i~~~~--~ipvia~GGi~s~~di~~~~~~g~~dgv~~g 229 (254)
T TIGR00735 159 EWAKEVEKLGAGEILLTSMDKDGTKSGYDLELTKAVSEAV--KIPVIASGGAGKPEHFYEAFTKGKADAALAA 229 (254)
T ss_pred HHHHHHHHcCCCEEEEeCcCcccCCCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCcceeeEh
Confidence 345566677888887765542 110011134555555554 4687765 799999999999988 9987443
No 245
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=35.85 E-value=52 Score=33.21 Aligned_cols=40 Identities=18% Similarity=0.125 Sum_probs=34.9
Q ss_pred HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 226 PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++.|+++.+..| .|..+-|+-++.+...+++.|+|.++.+
T Consensus 225 w~~i~~ir~~~~--~pviiKgV~~~eda~~a~~~G~d~I~VS 264 (361)
T cd04736 225 WQDLRWLRDLWP--HKLLVKGIVTAEDAKRCIELGADGVILS 264 (361)
T ss_pred HHHHHHHHHhCC--CCEEEecCCCHHHHHHHHHCCcCEEEEC
Confidence 567888888875 4888889999999999999999999876
No 246
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=35.77 E-value=91 Score=30.61 Aligned_cols=63 Identities=11% Similarity=0.031 Sum_probs=42.6
Q ss_pred HHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhh
Q 015981 203 VAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLT 273 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a 273 (397)
..+.+.+.+.+.-++ ++++.++++. ++.+...-..|--++..|..-...|||.|...++|..+
T Consensus 224 a~~~gaDiI~LDn~s----~e~~~~av~~----~~~~~~ieaSGGI~~~ni~~yA~tGVD~Is~galthsa 286 (296)
T PRK09016 224 ALKAGADIIMLDNFT----TEQMREAVKR----TNGRALLEVSGNVTLETLREFAETGVDFISVGALTKHV 286 (296)
T ss_pred HHHcCCCEEEeCCCC----hHHHHHHHHh----hcCCeEEEEECCCCHHHHHHHHhcCCCEEEeCccccCC
Confidence 344677777776543 4556666653 33322233457669999999999999999999887544
No 247
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=35.64 E-value=1.5e+02 Score=28.61 Aligned_cols=63 Identities=21% Similarity=0.121 Sum_probs=43.6
Q ss_pred HHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhH
Q 015981 203 VAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIY 270 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~ 270 (397)
..+.+.+.+.+|.+. +++..++++.+....| +.|....|=-++.++....+.|+|.|-...++
T Consensus 199 A~~~gaD~I~ld~~~----p~~l~~~~~~~~~~~~-~i~i~AsGGI~~~ni~~~~~~Gvd~I~vsai~ 261 (272)
T cd01573 199 AAEAGADILQLDKFS----PEELAELVPKLRSLAP-PVLLAAAGGINIENAAAYAAAGADILVTSAPY 261 (272)
T ss_pred HHHcCCCEEEECCCC----HHHHHHHHHHHhccCC-CceEEEECCCCHHHHHHHHHcCCcEEEEChhh
Confidence 345788888888654 2344556654443333 57777776559999999999999999544544
No 248
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=34.70 E-value=1.3e+02 Score=27.60 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=41.4
Q ss_pred HHHHHhcCCceEEEcCccCCCch--hhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEec
Q 015981 200 AQEVAVRNVSGYWIGGFGLGESM--EERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 200 a~~l~~~~~~G~~IgGl~~ge~~--~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~ 266 (397)
++++.+.|.+-+.+.+ .....+ ++..++++.+.+. .+.| .+.++.++.++..+...|+|++.+
T Consensus 81 v~~a~~aGad~I~~d~-~~~~~p~~~~~~~~i~~~~~~--~~i~-vi~~v~t~ee~~~a~~~G~d~i~~ 145 (221)
T PRK01130 81 VDALAAAGADIIALDA-TLRPRPDGETLAELVKRIKEY--PGQL-LMADCSTLEEGLAAQKLGFDFIGT 145 (221)
T ss_pred HHHHHHcCCCEEEEeC-CCCCCCCCCCHHHHHHHHHhC--CCCe-EEEeCCCHHHHHHHHHcCCCEEEc
Confidence 4566677888444432 322222 4556777777665 2344 345788999999999999999865
No 249
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=34.69 E-value=4.2e+02 Score=25.35 Aligned_cols=126 Identities=15% Similarity=0.151 Sum_probs=67.8
Q ss_pred hhhHHHHHHhcCCcEE---EEcCCCCCCCCCHHHHHHHHHHH----------HHHHHHHHHhCCCCCCeEEeecCCCCHH
Q 015981 128 PVEYMEMITSMKPNLW---ATLADEVPAWANNKRNKTSVDRT----------VKWLDECIARSPAGGAVFGSIVGGSNIE 194 (397)
Q Consensus 128 pe~~~~~q~~i~pDi~---~~L~d~~~~~~~~kr~~~sverT----------~~w~~~~l~~~~~~~~lf~~iqGg~~~~ 194 (397)
..++++....-|+|++ ++++|+.. +..-++++-+|. .+|+++.-+... +-.++ +-+-+++-
T Consensus 28 ~~~~~~~l~~~Gad~iElGiPfSDP~a---DGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~-~~p~v--lm~Y~N~i 101 (258)
T PRK13111 28 SLEIIKALVEAGADIIELGIPFSDPVA---DGPVIQAASLRALAAGVTLADVFELVREIREKDP-TIPIV--LMTYYNPI 101 (258)
T ss_pred HHHHHHHHHHCCCCEEEECCCCCCCcc---cCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCC-CCCEE--EEecccHH
Confidence 3455666667799997 66766443 333444444444 555555432211 11221 33333332
Q ss_pred HH---HHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHH-HcCCcEEe
Q 015981 195 ER---KRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGV-AAGVDLFD 265 (397)
Q Consensus 195 lR---~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v-~~GvD~FD 265 (397)
++ ++..+++.+.|++|..|-.+.. ++..+.++.+.+. .-.+..+....+|.+-+..+ +..-+.+.
T Consensus 102 ~~~G~e~f~~~~~~aGvdGviipDLp~----ee~~~~~~~~~~~--gl~~I~lvap~t~~eri~~i~~~s~gfIY 170 (258)
T PRK13111 102 FQYGVERFAADAAEAGVDGLIIPDLPP----EEAEELRAAAKKH--GLDLIFLVAPTTTDERLKKIASHASGFVY 170 (258)
T ss_pred hhcCHHHHHHHHHHcCCcEEEECCCCH----HHHHHHHHHHHHc--CCcEEEEeCCCCCHHHHHHHHHhCCCcEE
Confidence 21 2456677788999999987653 5555666655543 12345556677766555544 45444443
No 250
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=34.68 E-value=3.8e+02 Score=25.12 Aligned_cols=79 Identities=16% Similarity=0.118 Sum_probs=48.2
Q ss_pred eEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchh----hH-HHHHHHHHcCCCCCCcccccCCCChHHHHHHH
Q 015981 183 VFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESME----ER-PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGV 257 (397)
Q Consensus 183 lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~----~~-~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v 257 (397)
+..=+-|..+++.|.+-.++ .+++-... +.|-+.+ +. ++.+..+.+........-+-|=-+|.+|..++
T Consensus 109 v~iDl~~~~~~~~~~~~l~~---~gvd~~~~---H~g~D~q~~G~~~~~~~l~~ik~~~~~g~~vAVaGGI~~~~i~~~~ 182 (217)
T COG0269 109 VQIDLIGVWDPEQRAKWLKE---LGVDQVIL---HRGRDAQAAGKSWGEDDLEKIKKLSDLGAKVAVAGGITPEDIPLFK 182 (217)
T ss_pred EEEEeecCCCHHHHHHHHHH---hCCCEEEE---EecccHhhcCCCccHHHHHHHHHhhccCceEEEecCCCHHHHHHHh
Confidence 55555677888888754443 55554332 3332211 11 34455555554433455567777999999999
Q ss_pred HcCCcEEecc
Q 015981 258 AAGVDLFDSA 267 (397)
Q Consensus 258 ~~GvD~FD~~ 267 (397)
..|+|+|-.-
T Consensus 183 ~~~~~ivIvG 192 (217)
T COG0269 183 GIGADIVIVG 192 (217)
T ss_pred cCCCCEEEEC
Confidence 9999999743
No 251
>TIGR00423 radical SAM domain protein, CofH subfamily. This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.
Probab=34.52 E-value=2e+02 Score=28.00 Aligned_cols=76 Identities=13% Similarity=0.004 Sum_probs=43.2
Q ss_pred CCCHHHHHHHHHHHHhcCCc--eE---EE-----cCcc-C------CCchhhHHHHHHHHHcCCCCCCcccccC-C--CC
Q 015981 190 GSNIEERKRCAQEVAVRNVS--GY---WI-----GGFG-L------GESMEERPSLLNAVTDNLPKDWPRMICG-L--GL 249 (397)
Q Consensus 190 g~~~~lR~~sa~~l~~~~~~--G~---~I-----gGl~-~------ge~~~~~~~~v~~~~~~Lp~~kpr~l~G-~--g~ 249 (397)
|...+-|.+.+..+.+++.. || .- .|-. . .-+..+..+++..+.=.|| +-|+ +.+ . -.
T Consensus 170 ~Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp-~~~~-i~a~~~~l~ 247 (309)
T TIGR00423 170 VENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLN-NIRN-IQASWVKLG 247 (309)
T ss_pred CCCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcC-CCcc-ceecchhcC
Confidence 35777788888888765432 21 11 1111 1 1233556667766666677 4343 222 1 13
Q ss_pred hHHHHHHHHcCCcEEecc
Q 015981 250 PEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 250 P~~il~~v~~GvD~FD~~ 267 (397)
|.....+...|+|-++++
T Consensus 248 ~~~~~~~l~~Gand~~gt 265 (309)
T TIGR00423 248 LKLAQVALEFGANDLGGT 265 (309)
T ss_pred HHHHHHHHhCCCccCCcc
Confidence 554577889999999976
No 252
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=34.41 E-value=1.5e+02 Score=31.38 Aligned_cols=61 Identities=13% Similarity=0.029 Sum_probs=45.1
Q ss_pred HHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccC--CCChHHHHHHHHcCCcEE
Q 015981 200 AQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICG--LGLPEEVLQGVAAGVDLF 264 (397)
Q Consensus 200 a~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G--~g~P~~il~~v~~GvD~F 264 (397)
++.|.+.+++-+.|. ...|.+. ...+.|+++.+..|. +..+.+ +.++++...++..|+|.+
T Consensus 247 a~~Lv~aGvd~i~vd-~a~g~~~-~~~~~i~~ir~~~~~--~~~V~aGnV~t~e~a~~li~aGAd~I 309 (502)
T PRK07107 247 VPALVEAGADVLCID-SSEGYSE-WQKRTLDWIREKYGD--SVKVGAGNVVDREGFRYLAEAGADFV 309 (502)
T ss_pred HHHHHHhCCCeEeec-CcccccH-HHHHHHHHHHHhCCC--CceEEeccccCHHHHHHHHHcCCCEE
Confidence 455777899999887 4445442 335778888888773 233544 788999999999999987
No 253
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=34.19 E-value=82 Score=29.27 Aligned_cols=99 Identities=20% Similarity=0.396 Sum_probs=55.1
Q ss_pred CCc-eecChhhHHHHHHhcC--CcEEEEcCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHhCCCCC--CeE-EeecC
Q 015981 121 CGR-RLIKPVEYMEMITSMK--PNLWATLADEV-----PAWANNKRNKTSVDRTVKWLDECIARSPAGG--AVF-GSIVG 189 (397)
Q Consensus 121 ~G~-~~ltpe~~~~~q~~i~--pDi~~~L~d~~-----~~~~~~kr~~~sverT~~w~~~~l~~~~~~~--~lf-~~iqG 189 (397)
.|+ ..+-.++...+.+.++ ..|+++. +++ .-.++.+.++.-.+--.+|+..-+...-... .++ |.|-|
T Consensus 135 aG~t~dVv~~Ql~aiad~v~~w~niviAY-EPVWAIGTGk~atp~QaqEVh~~iR~wl~~~vs~~Va~~~RIiYGGSV~g 213 (247)
T KOG1643|consen 135 AGKTLDVVFRQLKAIADKVKDWSNIVIAY-EPVWAIGTGKTATPEQAQEVHAEIRKWLKSNVSDAVASSTRIIYGGSVNG 213 (247)
T ss_pred cCchHHHHHHHHHHHHHhcCCccceEEEe-eceeeecCCCCCCHHHHHHHHHHHHHHHhhcchhhhhhceEEEecccccc
Confidence 453 3555666666666665 5666765 554 1224566666655555667765332111111 133 34444
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHH
Q 015981 190 GSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLN 230 (397)
Q Consensus 190 g~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~ 230 (397)
+ .|.+...+.++|||.+||-++. .++..+++
T Consensus 214 ~-------N~~el~~~~diDGFLVGGaSLK---peF~~Iin 244 (247)
T KOG1643|consen 214 G-------NCKELAKKPDIDGFLVGGASLK---PEFVDIIN 244 (247)
T ss_pred c-------cHHHhcccccccceEEcCcccC---hHHHHhhh
Confidence 3 3444555679999999997754 34555554
No 254
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=34.12 E-value=2.1e+02 Score=23.24 Aligned_cols=67 Identities=13% Similarity=0.189 Sum_probs=37.5
Q ss_pred HHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 200 AQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 200 a~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++.+.+.+++-++|... .+...+...++++.+.+.-|.+.+.++=|..-...--.+-+.|+|.|=..
T Consensus 43 ~~~~~~~~pdvV~iS~~-~~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~~~~~~~~~G~D~~~~~ 109 (119)
T cd02067 43 VEAAKEEDADAIGLSGL-LTTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTRDFKFLKEIGVDAYFGP 109 (119)
T ss_pred HHHHHHcCCCEEEEecc-ccccHHHHHHHHHHHHHcCCCCCeEEEECCCCChhHHHHHHcCCeEEECC
Confidence 34455667777777654 24444555677777766644233344445443322235668999966443
No 255
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=34.08 E-value=3.2e+02 Score=27.85 Aligned_cols=42 Identities=7% Similarity=0.089 Sum_probs=29.9
Q ss_pred HHHHHHHHcCCCC-CCccccc-CCCChHHHHHHHHcCCcEEecc
Q 015981 226 PSLLNAVTDNLPK-DWPRMIC-GLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 226 ~~~v~~~~~~Lp~-~kpr~l~-G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++.|..+...++. +.|..-. |+.++.|++..+..|+|.+=..
T Consensus 239 l~~v~~~~~~~~~~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ 282 (420)
T PRK08318 239 LNMVAEIARDPETRGLPISGIGGIETWRDAAEFILLGAGTVQVC 282 (420)
T ss_pred HHHHHHHHhccccCCCCEEeecCcCCHHHHHHHHHhCCChheee
Confidence 5666666665542 4565533 6778999999999999977644
No 256
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=34.00 E-value=1.2e+02 Score=28.05 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=37.1
Q ss_pred HHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhH
Q 015981 201 QEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIY 270 (397)
Q Consensus 201 ~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~ 270 (397)
+...+.|.++...++.. .++++.+.. ....+++|+-+|.++..+...|+|.+=. ||+
T Consensus 77 ~~a~~aGA~fivsp~~~--------~~v~~~~~~----~~~~~~~G~~t~~E~~~A~~~Gad~vk~-Fpa 133 (206)
T PRK09140 77 DRLADAGGRLIVTPNTD--------PEVIRRAVA----LGMVVMPGVATPTEAFAALRAGAQALKL-FPA 133 (206)
T ss_pred HHHHHcCCCEEECCCCC--------HHHHHHHHH----CCCcEEcccCCHHHHHHHHHcCCCEEEE-CCC
Confidence 34445677777555432 234443331 1234588999999999999999998863 663
No 257
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=33.99 E-value=55 Score=31.89 Aligned_cols=48 Identities=25% Similarity=0.319 Sum_probs=0.0
Q ss_pred cCccCCCchhhHHHHHHHHHcCCCCCCccc-ccCCCChHHHHHHHHcCCcEEecc
Q 015981 214 GGFGLGESMEERPSLLNAVTDNLPKDWPRM-ICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 214 gGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~-l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
||..--.++ +.|+++.+.+ +.|.+ +.-+|+-.+.-.+.++|+|++|++
T Consensus 48 ggv~R~~~p----~~I~~I~~~V--~iPVig~~kigh~~Ea~~L~~~GvDiIDeT 96 (287)
T TIGR00343 48 GGVARMSDP----KMIKEIMDAV--SIPVMAKVRIGHFVEAQILEALGVDYIDES 96 (287)
T ss_pred CCeeecCCH----HHHHHHHHhC--CCCEEEEeeccHHHHHHHHHHcCCCEEEcc
No 258
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=33.91 E-value=4.6e+02 Score=26.58 Aligned_cols=71 Identities=20% Similarity=0.143 Sum_probs=39.8
Q ss_pred HHhcCCceEEEcCccCC--CchhhH------------HHHHHHHHcCCCCCCccccc--CCCChHHHHHHHHcCCcEEec
Q 015981 203 VAVRNVSGYWIGGFGLG--ESMEER------------PSLLNAVTDNLPKDWPRMIC--GLGLPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~g--e~~~~~------------~~~v~~~~~~Lp~~kpr~l~--G~g~P~~il~~v~~GvD~FD~ 266 (397)
+.+.++|.+.|+|...| .++..+ .++.+...+.=-.++...+. |+.+|.||+.++++|.|.+-.
T Consensus 223 ~~~ag~D~ItIDG~~GGTGAap~~~~d~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~i 302 (368)
T PF01645_consen 223 AAKAGADFITIDGAEGGTGAAPLTSMDHVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYI 302 (368)
T ss_dssp HHHTT-SEEEEE-TT---SSEECCHHHHC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-
T ss_pred hhhccCCEEEEeCCCCCCCCCchhHHhhCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEe
Confidence 56789999999998754 222111 12222222222245555554 888999999999999999988
Q ss_pred chhHHhh
Q 015981 267 AYIYHLT 273 (397)
Q Consensus 267 ~~p~~~a 273 (397)
.-+...|
T Consensus 303 gt~~liA 309 (368)
T PF01645_consen 303 GTAALIA 309 (368)
T ss_dssp SHHHHHH
T ss_pred cchhhhh
Confidence 8666554
No 259
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=33.76 E-value=1.3e+02 Score=28.03 Aligned_cols=65 Identities=15% Similarity=-0.011 Sum_probs=45.2
Q ss_pred HHHHhcCCceEEEcCccCCCchh----hHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 201 QEVAVRNVSGYWIGGFGLGESME----ERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 201 ~~l~~~~~~G~~IgGl~~ge~~~----~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++..+.+++.+.+|-+--..+++ .-.+.+.++.+..+ .|.+..|=-+|+.+...++.|+|.+=.+
T Consensus 118 ~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~~--iP~vAIGGi~~~nv~~v~~~Ga~gVAvv 186 (211)
T COG0352 118 LEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELVN--IPVVAIGGINLENVPEVLEAGADGVAVV 186 (211)
T ss_pred HHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhCC--CCEEEEcCCCHHHHHHHHHhCCCeEEeh
Confidence 34455678889888765332221 12556666666654 8888888889999999999999955444
No 260
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=33.71 E-value=80 Score=27.77 Aligned_cols=57 Identities=21% Similarity=0.323 Sum_probs=39.6
Q ss_pred ccCCCCCCCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015981 313 RKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRR 387 (397)
Q Consensus 313 ~~D~~pl~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~~~~ 387 (397)
...++-|...=-|+.|+|-+=+ ..+ --.-..+...+|+.+.+|.=++-+-.|+-.|+
T Consensus 35 e~ra~~Lt~~LRCp~CQNqsIa------dSn------------A~IA~DlR~~V~e~l~eGkS~~qIid~mVaRY 91 (153)
T COG3088 35 EQRARALTEELRCPQCQNQSIA------DSN------------APIARDLRHQVYELLQEGKSDQQIIDYMVARY 91 (153)
T ss_pred HHHHHHHHHhcCCCcCCCCChh------hhc------------cHHHHHHHHHHHHHHHcCCcHHHHHHHHHHhh
Confidence 3344445566689999998844 222 22234566789999999998888888877765
No 261
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=33.33 E-value=4.2e+02 Score=24.96 Aligned_cols=93 Identities=16% Similarity=0.065 Sum_probs=54.8
Q ss_pred HHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEc-------------CccCCCchhhHHHHHHHHH
Q 015981 167 VKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIG-------------GFGLGESMEERPSLLNAVT 233 (397)
Q Consensus 167 ~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~Ig-------------Gl~~ge~~~~~~~~v~~~~ 233 (397)
..|.++-+..-+... .+.+-.|+.+++.-.++++.+.+ +++++-|- |..+..+++...++++++.
T Consensus 54 ~~~i~~e~~~~~~~~-~vivnv~~~~~ee~~~~a~~v~~-~~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~ 131 (231)
T TIGR00736 54 NSYIIEQIKKAESRA-LVSVNVRFVDLEEAYDVLLTIAE-HADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMK 131 (231)
T ss_pred HHHHHHHHHHHhhcC-CEEEEEecCCHHHHHHHHHHHhc-CCCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHH
Confidence 466666554332222 34444566677777778877755 67776652 2223456677788888887
Q ss_pred cCCCCCCcccc-c--CCC--ChHHHHHH-HHcCCcEE
Q 015981 234 DNLPKDWPRMI-C--GLG--LPEEVLQG-VAAGVDLF 264 (397)
Q Consensus 234 ~~Lp~~kpr~l-~--G~g--~P~~il~~-v~~GvD~F 264 (397)
+. ++|..+ + |.. ...++..+ .+.|+|.+
T Consensus 132 ~~---~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i 165 (231)
T TIGR00736 132 EL---NKPIFVKIRGNCIPLDELIDALNLVDDGFDGI 165 (231)
T ss_pred cC---CCcEEEEeCCCCCcchHHHHHHHHHHcCCCEE
Confidence 42 577543 2 332 23345444 57999977
No 262
>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain. FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.
Probab=33.27 E-value=61 Score=32.49 Aligned_cols=40 Identities=15% Similarity=0.142 Sum_probs=34.6
Q ss_pred HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 226 PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++.|+++.+.. +.|..+-|++++.+...+++.|+|.++.+
T Consensus 202 ~~~i~~l~~~~--~~PvivKgv~~~~dA~~a~~~G~d~I~vs 241 (344)
T cd02922 202 WDDIKWLRKHT--KLPIVLKGVQTVEDAVLAAEYGVDGIVLS 241 (344)
T ss_pred HHHHHHHHHhc--CCcEEEEcCCCHHHHHHHHHcCCCEEEEE
Confidence 56677777776 47888889999999999999999999977
No 263
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=33.14 E-value=1.5e+02 Score=26.61 Aligned_cols=64 Identities=16% Similarity=0.083 Sum_probs=42.2
Q ss_pred HHhcCCceEEEcCccCCCchh----hH-HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 203 VAVRNVSGYWIGGFGLGESME----ER-PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~ge~~~----~~-~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
..+.+++.+.++.+-.+.+.. .. .+.++.+.+.++ +.|.+..|--++.++..+...|+|.+-..
T Consensus 120 a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~v~a~GGI~~~~i~~~~~~Ga~gv~~g 188 (212)
T PRK00043 120 ALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG-DIPIVAIGGITPENAPEVLEAGADGVAVV 188 (212)
T ss_pred HhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC-CCCEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 335688888777554322111 01 455666666664 47877776558999999999999998654
No 264
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=32.93 E-value=2.1e+02 Score=26.45 Aligned_cols=76 Identities=16% Similarity=0.211 Sum_probs=54.1
Q ss_pred CeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCC---hHHHHHHHH
Q 015981 182 AVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGL---PEEVLQGVA 258 (397)
Q Consensus 182 ~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~---P~~il~~v~ 258 (397)
.+++++-+- +.+.=.+.++.+.+-|+..+-|-- +.+...+.++.+.+..| ..+.|+|+ +++.-.++.
T Consensus 9 ~liaVlr~~-~~e~a~~~~~al~~~Gi~~iEit~-----~t~~a~~~i~~l~~~~~----~~~vGAGTVl~~~~a~~a~~ 78 (204)
T TIGR01182 9 KIVPVIRID-DVDDALPLAKALIEGGLRVLEVTL-----RTPVALDAIRLLRKEVP----DALIGAGTVLNPEQLRQAVD 78 (204)
T ss_pred CEEEEEecC-CHHHHHHHHHHHHHcCCCEEEEeC-----CCccHHHHHHHHHHHCC----CCEEEEEeCCCHHHHHHHHH
Confidence 488999874 555555667778888887776642 22334566666666554 46778885 899999999
Q ss_pred cCCcEEecc
Q 015981 259 AGVDLFDSA 267 (397)
Q Consensus 259 ~GvD~FD~~ 267 (397)
.|.|.+-|+
T Consensus 79 aGA~FivsP 87 (204)
T TIGR01182 79 AGAQFIVSP 87 (204)
T ss_pred cCCCEEECC
Confidence 999999776
No 265
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=32.91 E-value=1.6e+02 Score=26.30 Aligned_cols=57 Identities=12% Similarity=0.191 Sum_probs=40.3
Q ss_pred cCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEE
Q 015981 206 RNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLF 264 (397)
Q Consensus 206 ~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~F 264 (397)
...+-|++=-+-+|... =..+|+++.+..+.-+...|.|.|+...-+.+|.+|.+=.
T Consensus 51 t~~PayAvvDlkL~~gs--GL~~i~~lr~~~~d~rivvLTGy~sIATAV~AvKlGA~~Y 107 (182)
T COG4567 51 TAPPAYAVVDLKLGDGS--GLAVIEALRERRADMRIVVLTGYASIATAVEAVKLGACDY 107 (182)
T ss_pred cCCCceEEEEeeecCCC--chHHHHHHHhcCCcceEEEEecchHHHHHHHHHHhhhhhh
Confidence 34556665444332211 1467788888888877788889999999999999998643
No 266
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=32.88 E-value=4.2e+02 Score=24.85 Aligned_cols=118 Identities=13% Similarity=0.178 Sum_probs=67.2
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCC-eEEeecCCCCHHHHHHHHHHHHh
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGA-VFGSIVGGSNIEERKRCAQEVAV 205 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~-lf~~iqGg~~~~lR~~sa~~l~~ 205 (397)
.++.+++.....|+|.++.. |. |+ |...+|.+.|.+. +. ....+......+ |.+.+... .
T Consensus 92 G~~~fi~~~~~aG~~giiip-Dl-~~-----------ee~~~~~~~~~~~----g~~~i~~i~P~T~~~-~i~~i~~~-~ 152 (242)
T cd04724 92 GLERFLRDAKEAGVDGLIIP-DL-PP-----------EEAEEFREAAKEY----GLDLIFLVAPTTPDE-RIKKIAEL-A 152 (242)
T ss_pred CHHHHHHHHHHCCCcEEEEC-CC-CH-----------HHHHHHHHHHHHc----CCcEEEEeCCCCCHH-HHHHHHhh-C
Confidence 35999999999999988776 32 11 2334555555442 22 333344444443 33322221 1
Q ss_pred cCCceEEEc--CccCCCc--hhhHHHHHHHHHcCCCCCCcccc-cCCCChHHHHHHHHcCCcEEecc
Q 015981 206 RNVSGYWIG--GFGLGES--MEERPSLLNAVTDNLPKDWPRMI-CGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 206 ~~~~G~~Ig--Gl~~ge~--~~~~~~~v~~~~~~Lp~~kpr~l-~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
.++- |.++ |...+.. .....+.++.+.+. .+.|..+ +|+.+++++-.+++. +|.+-.-
T Consensus 153 ~~~v-y~~s~~g~tG~~~~~~~~~~~~i~~lr~~--~~~pI~vggGI~~~e~~~~~~~~-ADgvVvG 215 (242)
T cd04724 153 SGFI-YYVSRTGVTGARTELPDDLKELIKRIRKY--TDLPIAVGFGISTPEQAAEVAKY-ADGVIVG 215 (242)
T ss_pred CCCE-EEEeCCCCCCCccCCChhHHHHHHHHHhc--CCCcEEEEccCCCHHHHHHHHcc-CCEEEEC
Confidence 2332 3332 2111211 23455667666665 2678766 688899999999999 9977655
No 267
>PF03716 WCCH: WCCH motif ; InterPro: IPR005159 The WCCH motif is found in a retrotransposons and Gemini viruses. A specific function has not been associated to this motif [].
Probab=32.81 E-value=26 Score=21.14 Aligned_cols=14 Identities=50% Similarity=1.395 Sum_probs=12.0
Q ss_pred CCCCCCCCcccccc
Q 015981 318 PIVEDCCCYTCQNH 331 (397)
Q Consensus 318 pl~~~C~C~tC~~~ 331 (397)
|+-.+|.|+-|-+|
T Consensus 1 p~~~pC~cphCprH 14 (25)
T PF03716_consen 1 PIWQPCCCPHCPRH 14 (25)
T ss_pred CcccccCCCCCccc
Confidence 56688999999987
No 268
>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed
Probab=32.64 E-value=80 Score=29.83 Aligned_cols=48 Identities=21% Similarity=0.366 Sum_probs=33.2
Q ss_pred HHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHH
Q 015981 201 QEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEV 253 (397)
Q Consensus 201 ~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~i 253 (397)
+.+.+.+.+.+.||| +.|-+.+.+.++++.+.+ .+.|..++ +|++..|
T Consensus 26 ~~~~~~gtdai~vGG-S~~vt~~~~~~~v~~ik~---~~lPvilf-p~~~~~i 73 (232)
T PRK04169 26 EAICESGTDAIIVGG-SDGVTEENVDELVKAIKE---YDLPVILF-PGNIEGI 73 (232)
T ss_pred HHHHhcCCCEEEEcC-CCccchHHHHHHHHHHhc---CCCCEEEe-CCCcccc
Confidence 567778899999998 445555666777777776 34787776 6666543
No 269
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=32.64 E-value=1.6e+02 Score=27.38 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=42.7
Q ss_pred HHHHHHhcCCceEEEcCccC-CCchhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecc
Q 015981 199 CAQEVAVRNVSGYWIGGFGL-GESMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 199 sa~~l~~~~~~G~~IgGl~~-ge~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~ 267 (397)
.++.+.+.|++.+.+-.+.. +.......++++.+.+.+ +-|..+- |+.++.++..+++.|+|.+...
T Consensus 32 ~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i~~i~~~~--~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 32 LAKRYNEQGADELVFLDITASSEGRETMLDVVERVAEEV--FIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred HHHHHHHCCCCEEEEEcCCcccccCcccHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 44555566777666655542 222222345666666655 2566554 8889999999999999977655
No 270
>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family. members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.
Probab=32.61 E-value=2.2e+02 Score=28.12 Aligned_cols=77 Identities=19% Similarity=0.136 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHhcCCce--EE--E------cCccCC----CchhhHHHHHHHHHcCCCCCCcccccCCC---ChHH
Q 015981 190 GSNIEERKRCAQEVAVRNVSG--YW--I------GGFGLG----ESMEERPSLLNAVTDNLPKDWPRMICGLG---LPEE 252 (397)
Q Consensus 190 g~~~~lR~~sa~~l~~~~~~G--~~--I------gGl~~g----e~~~~~~~~v~~~~~~Lp~~kpr~l~G~g---~P~~ 252 (397)
|...+-|.+.+..+.+++... |. | .|-... .+.++..+++..+.-.+|. .++ +.|-. ....
T Consensus 206 gEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~-~~~-i~~~~~~~g~~~ 283 (340)
T TIGR03699 206 VETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDN-IPN-IQASWVTQGKEV 283 (340)
T ss_pred CCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCC-CCc-ccCCccccChHH
Confidence 566777777788887765432 11 1 132221 2345667777777778885 554 33322 1223
Q ss_pred HHHHHHcCCcEEecch
Q 015981 253 VLQGVAAGVDLFDSAY 268 (397)
Q Consensus 253 il~~v~~GvD~FD~~~ 268 (397)
-..+...|+|-++++.
T Consensus 284 ~~~~l~~Gan~~~g~~ 299 (340)
T TIGR03699 284 GQLALHFGANDFGSTM 299 (340)
T ss_pred HHHHHhcCCccCCCcc
Confidence 3557889999988764
No 271
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=32.59 E-value=68 Score=32.50 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 226 PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++-|+++.+.- +.|..+=|+.++.+...+++.|+|.++.+
T Consensus 213 W~di~wlr~~~--~~PiivKgV~~~~dA~~a~~~Gvd~I~Vs 252 (367)
T PLN02493 213 WKDVQWLQTIT--KLPILVKGVLTGEDARIAIQAGAAGIIVS 252 (367)
T ss_pred HHHHHHHHhcc--CCCEEeecCCCHHHHHHHHHcCCCEEEEC
Confidence 45567777664 47988999999999999999999999877
No 272
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=32.38 E-value=90 Score=31.05 Aligned_cols=38 Identities=13% Similarity=0.291 Sum_probs=26.4
Q ss_pred HHHHHHcCCCCCCcccc-cCCCChHHHHHHHHcCCcEEecc
Q 015981 228 LLNAVTDNLPKDWPRMI-CGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 228 ~v~~~~~~Lp~~kpr~l-~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
.|+.+.+. + +-|..+ -|+|+|.|+..++++|.|-.=..
T Consensus 240 ~i~~~~e~-~-~vpVivdAGIg~~sda~~AmelGadgVL~n 278 (326)
T PRK11840 240 TIRLIVEG-A-TVPVLVDAGVGTASDAAVAMELGCDGVLMN 278 (326)
T ss_pred HHHHHHHc-C-CCcEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 34444444 2 356554 49999999999999999965443
No 273
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=32.21 E-value=1.3e+02 Score=28.44 Aligned_cols=68 Identities=22% Similarity=0.254 Sum_probs=44.0
Q ss_pred HHHHHHHhcCCceEEEcCccC-CCchhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHc-CCcEEecc
Q 015981 198 RCAQEVAVRNVSGYWIGGFGL-GESMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAA-GVDLFDSA 267 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~-ge~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~-GvD~FD~~ 267 (397)
+-++++.+.+++.+.+-++.. |-....-.++++.+.+.. +.|.+.. |+.++.++..+... |+|-.-..
T Consensus 157 ~~~~~~~~~g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~--~ipvia~GGv~s~~d~~~~~~~~G~~gvivg 227 (253)
T PRK02083 157 EWAKEVEELGAGEILLTSMDRDGTKNGYDLELTRAVSDAV--NVPVIASGGAGNLEHFVEAFTEGGADAALAA 227 (253)
T ss_pred HHHHHHHHcCCCEEEEcCCcCCCCCCCcCHHHHHHHHhhC--CCCEEEECCCCCHHHHHHHHHhCCccEEeEh
Confidence 445666778999888855442 211011145666666655 4677765 79999999999975 99865443
No 274
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=32.02 E-value=3.3e+02 Score=23.34 Aligned_cols=62 Identities=21% Similarity=0.187 Sum_probs=37.8
Q ss_pred HHhcCCceEEEcCccCCCchhh----HHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEec
Q 015981 203 VAVRNVSGYWIGGFGLGESMEE----RPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~ge~~~~----~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~ 266 (397)
+.+.+++.+.+++...+..... ....+..... .+ +.|.... |+.+|.++..+++.|+|.+..
T Consensus 132 ~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 132 AEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR-GS-KVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred HHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh-cC-CCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 5567888888876543221110 0122222222 22 4676654 688889999999999998864
No 275
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain. Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th
Probab=31.88 E-value=2.2e+02 Score=27.19 Aligned_cols=75 Identities=12% Similarity=-0.004 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchh
Q 015981 191 SNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 191 ~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p 269 (397)
+..+.+.+.++.|.+.|++-+-+|.- ...++..+.++.+... +.....+.+...++.+|-.+.+.|+|.+.-.+|
T Consensus 19 ~s~~~k~~i~~~L~~~Gv~~IEvG~P---~~~~~~~~~~~~l~~~-~~~~~v~~~~r~~~~di~~a~~~g~~~i~i~~~ 93 (262)
T cd07948 19 FDTEDKIEIAKALDAFGVDYIELTSP---AASPQSRADCEAIAKL-GLKAKILTHIRCHMDDARIAVETGVDGVDLVFG 93 (262)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECC---CCCHHHHHHHHHHHhC-CCCCcEEEEecCCHHHHHHHHHcCcCEEEEEEe
Confidence 45677888899999999998888742 2223445555555432 322223456788999999999999997766554
No 276
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=31.87 E-value=3.8e+02 Score=27.05 Aligned_cols=77 Identities=22% Similarity=0.264 Sum_probs=51.8
Q ss_pred eEEeecCCCC-HHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCC
Q 015981 183 VFGSIVGGSN-IEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGV 261 (397)
Q Consensus 183 lf~~iqGg~~-~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~Gv 261 (397)
+.+.-.|-.+ ...| ++.|.+.+++-+.|..-+ |.+ +...+.++.+.+..| +.|...=++.+++....++..|+
T Consensus 98 ~V~aavg~~~~~~er---~~~L~~agvD~ivID~a~-g~s-~~~~~~ik~ik~~~~-~~~viaGNV~T~e~a~~L~~aGa 171 (352)
T PF00478_consen 98 LVAAAVGTRDDDFER---AEALVEAGVDVIVIDSAH-GHS-EHVIDMIKKIKKKFP-DVPVIAGNVVTYEGAKDLIDAGA 171 (352)
T ss_dssp CEEEEEESSTCHHHH---HHHHHHTT-SEEEEE-SS-TTS-HHHHHHHHHHHHHST-TSEEEEEEE-SHHHHHHHHHTT-
T ss_pred eEEEEecCCHHHHHH---HHHHHHcCCCEEEccccC-ccH-HHHHHHHHHHHHhCC-CceEEecccCCHHHHHHHHHcCC
Confidence 4444444333 3333 345677799999998643 554 345678888888888 67776668999999999999999
Q ss_pred cEEe
Q 015981 262 DLFD 265 (397)
Q Consensus 262 D~FD 265 (397)
|.+=
T Consensus 172 d~vk 175 (352)
T PF00478_consen 172 DAVK 175 (352)
T ss_dssp SEEE
T ss_pred CEEE
Confidence 9874
No 277
>PRK04302 triosephosphate isomerase; Provisional
Probab=31.86 E-value=4.1e+02 Score=24.44 Aligned_cols=121 Identities=12% Similarity=-0.028 Sum_probs=62.6
Q ss_pred cChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHh
Q 015981 126 IKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAV 205 (397)
Q Consensus 126 ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~ 205 (397)
.|.+.+.+..+..|+|.++.-+-+-.. ...++ .++.+.+.+. + +-.++.-+...+++ .+.+
T Consensus 72 ~tg~~~~~~l~~~G~~~vii~~ser~~--~~~e~-------~~~v~~a~~~----G-l~~I~~v~~~~~~~-----~~~~ 132 (223)
T PRK04302 72 HTGHILPEAVKDAGAVGTLINHSERRL--TLADI-------EAVVERAKKL----G-LESVVCVNNPETSA-----AAAA 132 (223)
T ss_pred chhhhHHHHHHHcCCCEEEEecccccc--CHHHH-------HHHHHHHHHC----C-CeEEEEcCCHHHHH-----HHhc
Confidence 566778999999999998776422211 11222 2333344332 2 22222222222222 2333
Q ss_pred cCCceEEEc-----CccCC---CchhhHHHHHHHHHcCCCCCCccc-ccCCCChHHHHHHHHcCCcEEec
Q 015981 206 RNVSGYWIG-----GFGLG---ESMEERPSLLNAVTDNLPKDWPRM-ICGLGLPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 206 ~~~~G~~Ig-----Gl~~g---e~~~~~~~~v~~~~~~Lp~~kpr~-l~G~g~P~~il~~v~~GvD~FD~ 266 (397)
.+.+-+++. |.+.+ ..++...++++.+.+.. .+.|.. -.|+.+|.++-.+...|+|-+=.
T Consensus 133 ~~~~~I~~~p~~~igt~~~~~~~~~~~i~~~~~~ir~~~-~~~pvi~GggI~~~e~~~~~~~~gadGvlV 201 (223)
T PRK04302 133 LGPDYVAVEPPELIGTGIPVSKAKPEVVEDAVEAVKKVN-PDVKVLCGAGISTGEDVKAALELGADGVLL 201 (223)
T ss_pred CCCCEEEEeCccccccCCCCCcCCHHHHHHHHHHHHhcc-CCCEEEEECCCCCHHHHHHHHcCCCCEEEE
Confidence 343333322 22222 23344455555555432 245553 56888999999999999996543
No 278
>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed
Probab=31.68 E-value=3.9e+02 Score=26.13 Aligned_cols=83 Identities=16% Similarity=0.077 Sum_probs=48.1
Q ss_pred CCeEEeecCCCCHHHHHHHHHHHHhcC-CceEEE--------cCccCCCchhhHHHHHHHHHcCCCCCCcccc---cCCC
Q 015981 181 GAVFGSIVGGSNIEERKRCAQEVAVRN-VSGYWI--------GGFGLGESMEERPSLLNAVTDNLPKDWPRMI---CGLG 248 (397)
Q Consensus 181 ~~lf~~iqGg~~~~lR~~sa~~l~~~~-~~G~~I--------gGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l---~G~g 248 (397)
..+++.|.|.. .+.=.++++.+.+.+ .+++-+ ++...|.+++...++++++.+.. ++|..+ +.+
T Consensus 93 ~pvI~Si~G~~-~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~--~~Pv~vKlsp~~- 168 (310)
T PRK02506 93 KPHFLSVVGLS-PEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYF--TKPLGVKLPPYF- 168 (310)
T ss_pred CCEEEEEEeCc-HHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhc--CCccEEecCCCC-
Confidence 45888887744 444457777776555 566554 12223556677788888888765 356542 122
Q ss_pred ChHHHHHHH----HcCCcEEecc
Q 015981 249 LPEEVLQGV----AAGVDLFDSA 267 (397)
Q Consensus 249 ~P~~il~~v----~~GvD~FD~~ 267 (397)
+..++..+. +.|+|.+...
T Consensus 169 ~~~~~a~~~~~~~~~g~~~i~~~ 191 (310)
T PRK02506 169 DIVHFDQAAAIFNKFPLAFVNCI 191 (310)
T ss_pred CHHHHHHHHHHhCcCceEEEEEe
Confidence 455555443 4566665544
No 279
>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=31.63 E-value=4.9e+02 Score=25.30 Aligned_cols=129 Identities=16% Similarity=0.116 Sum_probs=69.3
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCH------H----HH
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNI------E----ER 196 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~------~----lR 196 (397)
+.|...+..+. |.+-+|. |.-.. -.+.-+++|.+..+.+-...-.-..=+|.|-|..+. + --
T Consensus 86 ~~e~i~~ai~~-GftSVM~--DgS~l-----p~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~p 157 (284)
T PRK12857 86 DFEQVMKCIRN-GFTSVMI--DGSKL-----PLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDP 157 (284)
T ss_pred CHHHHHHHHHc-CCCeEEE--eCCCC-----CHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCH
Confidence 55666666664 6666665 32111 245666677776665543211001135555442211 0 12
Q ss_pred HHHHHHHHhcCCceEEEc--CccCC--CchhhHHHHHHHHHcCCCCCCcccccCC-CC-hHHHHHHHHcCCcEEe
Q 015981 197 KRCAQEVAVRNVSGYWIG--GFGLG--ESMEERPSLLNAVTDNLPKDWPRMICGL-GL-PEEVLQGVAAGVDLFD 265 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~Ig--Gl~~g--e~~~~~~~~v~~~~~~Lp~~kpr~l~G~-g~-P~~il~~v~~GvD~FD 265 (397)
.++.+++.+.+++-+++. -.+.. ..+.-..++++.+.+.+ +.|..++|- |. .+++..++.+||-=|-
T Consensus 158 e~a~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiN 230 (284)
T PRK12857 158 EEARRFVEETGVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELV--NIPIVLHGSSGVPDEAIRKAISLGVRKVN 230 (284)
T ss_pred HHHHHHHHHHCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEE
Confidence 345566666788876653 22211 12233366777777766 478889866 44 4566668888875443
No 280
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=31.60 E-value=5.7e+02 Score=25.98 Aligned_cols=75 Identities=19% Similarity=0.098 Sum_probs=45.9
Q ss_pred HHHHHHhcCCceEEEcCccCCC--ch--------hhHHHHHHHHHcCC-----CCCCccccc-CCCChHHHHHHHHcCCc
Q 015981 199 CAQEVAVRNVSGYWIGGFGLGE--SM--------EERPSLLNAVTDNL-----PKDWPRMIC-GLGLPEEVLQGVAAGVD 262 (397)
Q Consensus 199 sa~~l~~~~~~G~~IgGl~~ge--~~--------~~~~~~v~~~~~~L-----p~~kpr~l~-G~g~P~~il~~v~~GvD 262 (397)
.++.+...+++++.|.|...|. .+ --....+.++.+.+ ..+-|.+.. |+.++.|++.++++|.|
T Consensus 230 ~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~~~~~~~~i~viasGGI~~g~Dv~kalaLGAd 309 (392)
T cd02808 230 IAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALVKNGLRDRVSLIASGGLRTGADVAKALALGAD 309 (392)
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHHHcCCCCCCeEEEECCCCCHHHHHHHHHcCCC
Confidence 3334444569999999875321 10 00122333333322 223454444 88999999999999999
Q ss_pred EEecchhHHhh
Q 015981 263 LFDSAYIYHLT 273 (397)
Q Consensus 263 ~FD~~~p~~~a 273 (397)
.+-..-+...|
T Consensus 310 ~V~ig~~~l~a 320 (392)
T cd02808 310 AVGIGTAALIA 320 (392)
T ss_pred eeeechHHHHh
Confidence 99888776554
No 281
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=31.53 E-value=3.5e+02 Score=23.53 Aligned_cols=121 Identities=11% Similarity=-0.028 Sum_probs=68.1
Q ss_pred hhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC-CCCeEEeecCCCC----HHHHHHHHHH
Q 015981 128 PVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPA-GGAVFGSIVGGSN----IEERKRCAQE 202 (397)
Q Consensus 128 pe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~-~~~lf~~iqGg~~----~~lR~~sa~~ 202 (397)
.++.++....-|.|-++..- .+++.+.+.... +-.++.-+ |... .+.-.+.+++
T Consensus 15 ~~~~~~~~~~~gv~gi~~~g--------------------~~i~~~~~~~~~~~~~v~~~v-~~~~~~~~~~~~~~~a~~ 73 (201)
T cd00945 15 IAKLCDEAIEYGFAAVCVNP--------------------GYVRLAADALAGSDVPVIVVV-GFPTGLTTTEVKVAEVEE 73 (201)
T ss_pred HHHHHHHHHHhCCcEEEECH--------------------HHHHHHHHHhCCCCCeEEEEe-cCCCCCCcHHHHHHHHHH
Confidence 45566666677888877762 334433333222 22233333 2233 5566667788
Q ss_pred HHhcCCceEEEcCcc-CCCc--hhhHHHHHHHHHcCCCCCCcccc---cCCC-ChHHHHHH----HHcCCcEEecchh
Q 015981 203 VAVRNVSGYWIGGFG-LGES--MEERPSLLNAVTDNLPKDWPRMI---CGLG-LPEEVLQG----VAAGVDLFDSAYI 269 (397)
Q Consensus 203 l~~~~~~G~~IgGl~-~ge~--~~~~~~~v~~~~~~Lp~~kpr~l---~G~g-~P~~il~~----v~~GvD~FD~~~p 269 (397)
..+.|.++..+..-. ...+ .++..+.++.+.+..+.+.|.++ .+.. +|..+..+ ...|+|.+..+..
T Consensus 74 a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK~~~~ 151 (201)
T cd00945 74 AIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIKTSTG 151 (201)
T ss_pred HHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEEeCCC
Confidence 888999998874211 1111 34455666666655444566543 2333 67777764 4689999976543
No 282
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=31.52 E-value=2.1e+02 Score=28.76 Aligned_cols=79 Identities=14% Similarity=0.101 Sum_probs=50.4
Q ss_pred ecCCCCHHH-HHHHHHHHHhcCCceEEEcCccC--CCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcC-Cc
Q 015981 187 IVGGSNIEE-RKRCAQEVAVRNVSGYWIGGFGL--GESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAG-VD 262 (397)
Q Consensus 187 iqGg~~~~l-R~~sa~~l~~~~~~G~~IgGl~~--ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~G-vD 262 (397)
+.||...+. -.+.++.|.+.+++-+-+.+-.. ++.. .....+.+.+.++ .|....|.-+|..+..+++.| +|
T Consensus 241 ~~~G~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~--~~~~~~~ik~~~~--~pv~~~G~~~~~~ae~~i~~G~~D 316 (362)
T PRK10605 241 VDNGPNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPY--SDAFREKVRARFH--GVIIGAGAYTAEKAETLIGKGLID 316 (362)
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCCEEEeccccccCCccc--cHHHHHHHHHHCC--CCEEEeCCCCHHHHHHHHHcCCCC
Confidence 457777766 57778888888887776654211 1111 1223333444443 477777777999999999998 88
Q ss_pred EEecchh
Q 015981 263 LFDSAYI 269 (397)
Q Consensus 263 ~FD~~~p 269 (397)
++-..-|
T Consensus 317 ~V~~gR~ 323 (362)
T PRK10605 317 AVAFGRD 323 (362)
T ss_pred EEEECHH
Confidence 8765543
No 283
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=31.19 E-value=1.3e+02 Score=24.57 Aligned_cols=21 Identities=14% Similarity=0.134 Sum_probs=18.4
Q ss_pred ecChhhHHHHHHhcCCcEEEE
Q 015981 125 LIKPVEYMEMITSMKPNLWAT 145 (397)
Q Consensus 125 ~ltpe~~~~~q~~i~pDi~~~ 145 (397)
.++++++++.....+||++..
T Consensus 36 ~~~~~~l~~~~~~~~pdvV~i 56 (119)
T cd02067 36 DVPPEEIVEAAKEEDADAIGL 56 (119)
T ss_pred CCCHHHHHHHHHHcCCCEEEE
Confidence 478999999999999998755
No 284
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=30.99 E-value=1.2e+02 Score=29.92 Aligned_cols=62 Identities=11% Similarity=0.079 Sum_probs=44.6
Q ss_pred cCCceEEEcCccC-CC----chhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHH
Q 015981 206 RNVSGYWIGGFGL-GE----SMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYH 271 (397)
Q Consensus 206 ~~~~G~~IgGl~~-ge----~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~ 271 (397)
.+++.+.+..+.. .+ +++++.+.++ .++...|.-..|=-++..|..-...|||.+...++|.
T Consensus 228 agaDiImLDnm~~~~~~~~~~~e~l~~av~----~~~~~~~lEaSGGIt~~ni~~yA~tGVD~Is~Galth 294 (308)
T PLN02716 228 TSLTRVMLDNMVVPLENGDVDVSMLKEAVE----LINGRFETEASGNVTLDTVHKIGQTGVTYISSGALTH 294 (308)
T ss_pred CCCCEEEeCCCcccccccCCCHHHHHHHHH----hhCCCceEEEECCCCHHHHHHHHHcCCCEEEeCcccc
Confidence 6888888887721 22 4455555544 4444455556677799999999999999999998774
No 285
>PLN02979 glycolate oxidase
Probab=30.93 E-value=75 Score=32.16 Aligned_cols=40 Identities=13% Similarity=0.038 Sum_probs=34.2
Q ss_pred HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 226 PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++-|+++.+.. +.|..+=|+.++.+...+++.|+|.++.+
T Consensus 212 W~dl~wlr~~~--~~PvivKgV~~~~dA~~a~~~Gvd~I~Vs 251 (366)
T PLN02979 212 WKDVQWLQTIT--KLPILVKGVLTGEDARIAIQAGAAGIIVS 251 (366)
T ss_pred HHHHHHHHhcc--CCCEEeecCCCHHHHHHHHhcCCCEEEEC
Confidence 45577777765 47888999999999999999999999876
No 286
>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.
Probab=30.84 E-value=5.3e+02 Score=25.39 Aligned_cols=130 Identities=9% Similarity=0.039 Sum_probs=66.8
Q ss_pred hHHHHHHhcCCcEEEEcCCCCCCCCCH--HHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHhcC
Q 015981 130 EYMEMITSMKPNLWATLADEVPAWANN--KRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRN 207 (397)
Q Consensus 130 ~~~~~q~~i~pDi~~~L~d~~~~~~~~--kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~~~ 207 (397)
++.+..+..++|.+..=--+++..... ...++.+.+-++++.+.. +-+++.=+-+... + -...++.+.+.|
T Consensus 116 ~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~-----~iPv~vKl~p~~~-~-~~~~a~~l~~~G 188 (325)
T cd04739 116 DYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAV-----TIPVAVKLSPFFS-A-LAHMAKQLDAAG 188 (325)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhcc-----CCCEEEEcCCCcc-C-HHHHHHHHHHcC
Confidence 455555667889874321222211110 011122223333333221 1235555544322 2 234455566778
Q ss_pred CceEEEcCccCCCch-------------------hhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecc
Q 015981 208 VSGYWIGGFGLGESM-------------------EERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 208 ~~G~~IgGl~~ge~~-------------------~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++|+.+.+-..+... ..-.+.+..+...+ +.|..-. |+.++.|++..+..|+|..-..
T Consensus 189 adgi~~~nt~~~~~id~~~~~~~~~~glSG~~~~~~al~~v~~v~~~~--~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ 266 (325)
T cd04739 189 ADGLVLFNRFYQPDIDLETLEVVPNLLLSSPAEIRLPLRWIAILSGRV--KASLAASGGVHDAEDVVKYLLAGADVVMTT 266 (325)
T ss_pred CCeEEEEcCcCCCCccccccceecCCCcCCccchhHHHHHHHHHHccc--CCCEEEECCCCCHHHHHHHHHcCCCeeEEe
Confidence 999887664311100 01124455555444 4665544 6889999999999999988766
Q ss_pred h
Q 015981 268 Y 268 (397)
Q Consensus 268 ~ 268 (397)
-
T Consensus 267 t 267 (325)
T cd04739 267 S 267 (325)
T ss_pred h
Confidence 3
No 287
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=30.79 E-value=3.2e+02 Score=26.67 Aligned_cols=99 Identities=20% Similarity=0.268 Sum_probs=61.8
Q ss_pred CceEEEcCCCceecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecC-CC
Q 015981 113 TGASFETPCGRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVG-GS 191 (397)
Q Consensus 113 ~gv~~~s~~G~~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqG-g~ 191 (397)
..|.+-++| +...++.++++..-+||++-=--+.++.....-|....-+||++.|+++-+..+.--.-=|++.| |.
T Consensus 149 t~iEvL~PD---F~G~~~al~~v~~~~pdV~nHNvETVprL~~~VRp~A~Y~~SL~~L~~~k~~~P~i~TKSgiMlGLGE 225 (306)
T COG0320 149 TTIEVLTPD---FRGNDDALEIVADAGPDVFNHNVETVPRLYPRVRPGATYERSLSLLERAKELGPDIPTKSGLMVGLGE 225 (306)
T ss_pred ceEEEeCcc---ccCCHHHHHHHHhcCcchhhcccccchhcccccCCCCcHHHHHHHHHHHHHhCCCcccccceeeecCC
Confidence 346666663 11167888899999999874432444433333355566788888888877655321111233333 34
Q ss_pred CHHHHHHHHHHHHhcCCceEEEc
Q 015981 192 NIEERKRCAQEVAVRNVSGYWIG 214 (397)
Q Consensus 192 ~~~lR~~sa~~l~~~~~~G~~Ig 214 (397)
..+.-.+..++|.+.|++-..||
T Consensus 226 t~~Ev~e~m~DLr~~gvdilTiG 248 (306)
T COG0320 226 TDEEVIEVMDDLRSAGVDILTIG 248 (306)
T ss_pred cHHHHHHHHHHHHHcCCCEEEec
Confidence 55666677888888888888887
No 288
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=30.41 E-value=4.2e+02 Score=24.14 Aligned_cols=64 Identities=16% Similarity=0.179 Sum_probs=39.6
Q ss_pred HHHhcCCceEEEc--CccCCC--chhhHHHHHHHHHcCCCCCCcccc-cCCCChHHHHHHHHcCCcEEecc
Q 015981 202 EVAVRNVSGYWIG--GFGLGE--SMEERPSLLNAVTDNLPKDWPRMI-CGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 202 ~l~~~~~~G~~Ig--Gl~~ge--~~~~~~~~v~~~~~~Lp~~kpr~l-~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
...+.+++.+.+. |..... ......+.++.+.+.+ +.|... .|+.+|.++..+++.|+|.+=..
T Consensus 138 ~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~--~ipvia~GGI~~~~~~~~~l~~GadgV~vG 206 (219)
T cd04729 138 NAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL--GIPVIAEGRINSPEQAAKALELGADAVVVG 206 (219)
T ss_pred HHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc--CCCEEEeCCCCCHHHHHHHHHCCCCEEEEc
Confidence 3445678776543 221110 1111235666666655 477664 58899999999999999976544
No 289
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=30.38 E-value=4.6e+02 Score=24.50 Aligned_cols=132 Identities=15% Similarity=0.105 Sum_probs=72.5
Q ss_pred ChhhHHHHHHhcCCcEE---EEcCCCCCCCCCHHHHHHHHHHHHHH---HHHHHH---hCCCCCCeEEeec-CCCCHHHH
Q 015981 127 KPVEYMEMITSMKPNLW---ATLADEVPAWANNKRNKTSVDRTVKW---LDECIA---RSPAGGAVFGSIV-GGSNIEER 196 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~---~~L~d~~~~~~~~kr~~~sverT~~w---~~~~l~---~~~~~~~lf~~iq-Gg~~~~lR 196 (397)
+.-.+++-.+..|+||+ |+++|+....+. ++++-+|++.. +.+.++ .....+-..+||. |-+++=||
T Consensus 33 ~T~kilkglq~gG~dIIELGvPfSDp~ADGPt---Iq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl~ 109 (268)
T KOG4175|consen 33 TTAKILKGLQSGGSDIIELGVPFSDPLADGPT---IQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPILR 109 (268)
T ss_pred HHHHHHHHHhcCCcCeEEecCccCccccCCch---hhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceeeeecccHHHh
Confidence 45667888889999997 778776643322 22222233221 222222 1111223455554 55666666
Q ss_pred HHH---HHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 197 KRC---AQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 197 ~~s---a~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
.-- +....+.|..||.|--+. +||-..+=+++.++= -...-|....+|.+=+.++..-.|.|--+
T Consensus 110 yG~e~~iq~ak~aGanGfiivDlP----pEEa~~~Rne~~k~g--islvpLvaPsTtdeRmell~~~adsFiYv 177 (268)
T KOG4175|consen 110 YGVENYIQVAKNAGANGFIIVDLP----PEEAETLRNEARKHG--ISLVPLVAPSTTDERMELLVEAADSFIYV 177 (268)
T ss_pred hhHHHHHHHHHhcCCCceEeccCC----hHHHHHHHHHHHhcC--ceEEEeeCCCChHHHHHHHHHhhcceEEE
Confidence 533 334456799999996544 333333333443321 11122557788998888888777777543
No 290
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=30.23 E-value=4.6e+02 Score=24.49 Aligned_cols=119 Identities=16% Similarity=0.142 Sum_probs=64.7
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEee-cCCCCHHHHHHHHHHHHh
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSI-VGGSNIEERKRCAQEVAV 205 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~i-qGg~~~~lR~~sa~~l~~ 205 (397)
.|+.|++.....|+|++..=.+.+. ...|++++.++. +.-.|+. -.++..+.-...+..+..
T Consensus 73 ~P~~~i~~~~~~gad~I~~H~Ea~~----------~~~~~l~~Ir~~-------g~k~GlalnP~T~~~~i~~~l~~vD~ 135 (223)
T PRK08745 73 PVDRIVPDFADAGATTISFHPEASR----------HVHRTIQLIKSH-------GCQAGLVLNPATPVDILDWVLPELDL 135 (223)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcc----------cHHHHHHHHHHC-------CCceeEEeCCCCCHHHHHHHHhhcCE
Confidence 5999999999999998877544321 245566666542 3334443 344554444444433321
Q ss_pred ---cC-CceEEEcCccCCCchhhHHHHHHHHHcCCCCCCc---ccccCCCChHHHHHHHHcCCcEEecc
Q 015981 206 ---RN-VSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWP---RMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 206 ---~~-~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kp---r~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
+- -+|| ||-.+-++ ..+-|+.+.+.+++..+ .-+=|--+...+..+++.|+|+|-+-
T Consensus 136 VlvMtV~PGf--~GQ~fi~~---~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~G 199 (223)
T PRK08745 136 VLVMSVNPGF--GGQAFIPS---ALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAG 199 (223)
T ss_pred EEEEEECCCC--CCccccHH---HHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 00 0122 12111121 22233333334333322 23446668999999999999999865
No 291
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=30.11 E-value=1.3e+02 Score=26.78 Aligned_cols=64 Identities=20% Similarity=0.110 Sum_probs=40.2
Q ss_pred HHHHHhcCCceEEEcCccCCCchh----hHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEe
Q 015981 200 AQEVAVRNVSGYWIGGFGLGESME----ERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFD 265 (397)
Q Consensus 200 a~~l~~~~~~G~~IgGl~~ge~~~----~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD 265 (397)
+++..+.+++.+.+|-+-...++. .=.+.+.+..+..+ .|.+.+|=-+|.++..+.+.|+|.+=
T Consensus 108 ~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~~--~pv~AlGGI~~~~i~~l~~~Ga~gvA 175 (180)
T PF02581_consen 108 AREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARASP--IPVYALGGITPENIPELREAGADGVA 175 (180)
T ss_dssp HHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHTS--SCEEEESS--TTTHHHHHHTT-SEEE
T ss_pred HHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHHhCC--CCEEEEcCCCHHHHHHHHHcCCCEEE
Confidence 344456788888887653222221 12455666666665 89898877799999999999999764
No 292
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed
Probab=30.04 E-value=4.7e+02 Score=26.00 Aligned_cols=86 Identities=12% Similarity=0.106 Sum_probs=48.2
Q ss_pred CeEEeecCCC------CHHHHHHHHHHHHhcCCceEEEc-------CccCCCchhhHHHHHHHHHcCCCC---CCcccc-
Q 015981 182 AVFGSIVGGS------NIEERKRCAQEVAVRNVSGYWIG-------GFGLGESMEERPSLLNAVTDNLPK---DWPRMI- 244 (397)
Q Consensus 182 ~lf~~iqGg~------~~~lR~~sa~~l~~~~~~G~~Ig-------Gl~~ge~~~~~~~~v~~~~~~Lp~---~kpr~l- 244 (397)
++++.|.|.. ..+--.++++.+.+ .++++-+- |...++..+...++++++.+.+.. +.|..+
T Consensus 139 pvivsI~~~~~~~~~~~~~d~~~~~~~~~~-~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vK 217 (344)
T PRK05286 139 PLGINIGKNKDTPLEDAVDDYLICLEKLYP-YADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVK 217 (344)
T ss_pred cEEEEEecCCCCCcccCHHHHHHHHHHHHh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEE
Confidence 4788886531 33344455555543 35555542 212244556667788877776542 477653
Q ss_pred cCCC----ChHHHHHH-HHcCCcEEecch
Q 015981 245 CGLG----LPEEVLQG-VAAGVDLFDSAY 268 (397)
Q Consensus 245 ~G~g----~P~~il~~-v~~GvD~FD~~~ 268 (397)
++.. ...++..+ .+.|+|.+...-
T Consensus 218 lsp~~~~~~~~~ia~~l~~~Gadgi~~~n 246 (344)
T PRK05286 218 IAPDLSDEELDDIADLALEHGIDGVIATN 246 (344)
T ss_pred eCCCCCHHHHHHHHHHHHHhCCcEEEEeC
Confidence 2332 24455554 458999888764
No 293
>PRK06801 hypothetical protein; Provisional
Probab=29.93 E-value=1.5e+02 Score=28.85 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=45.0
Q ss_pred HHHHHHHHhcCCceEEEcCccC--C---CchhhHHHHHHHHHcCCCCCCcccccCC--CChHHHHHHHHcCCcEEecc
Q 015981 197 KRCAQEVAVRNVSGYWIGGFGL--G---ESMEERPSLLNAVTDNLPKDWPRMICGL--GLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~IgGl~~--g---e~~~~~~~~v~~~~~~Lp~~kpr~l~G~--g~P~~il~~v~~GvD~FD~~ 267 (397)
.++.+.+.+.+++-+++ .++. | ..+..-.+.++.+.+.++ .|..++|- -..+++..++..||+-+-..
T Consensus 159 e~a~~f~~~tgvD~LAv-aiGt~Hg~y~~~~~l~~e~l~~i~~~~~--~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~ 233 (286)
T PRK06801 159 QLARDFVDRTGIDALAV-AIGNAHGKYKGEPKLDFARLAAIHQQTG--LPLVLHGGSGISDADFRRAIELGIHKINFY 233 (286)
T ss_pred HHHHHHHHHHCcCEEEe-ccCCCCCCCCCCCCCCHHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHcCCcEEEeh
Confidence 44455555678887777 4432 1 111223566777777663 79889877 46789999999999988765
No 294
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=29.93 E-value=4e+02 Score=23.68 Aligned_cols=115 Identities=16% Similarity=0.131 Sum_probs=61.1
Q ss_pred HHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEe-ecCCCCHHHHHHHHHHHHhcCCc
Q 015981 131 YMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGS-IVGGSNIEERKRCAQEVAVRNVS 209 (397)
Q Consensus 131 ~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~-iqGg~~~~lR~~sa~~l~~~~~~ 209 (397)
..+.....|+|++...+...+ ...++..+++++ .+..+++ +.|-.....+.+ ..+.+.+
T Consensus 69 ~~~~~~~aGad~i~~h~~~~~---------~~~~~~i~~~~~-------~g~~~~v~~~~~~t~~e~~~----~~~~~~d 128 (202)
T cd04726 69 EAEMAFKAGADIVTVLGAAPL---------STIKKAVKAAKK-------YGKEVQVDLIGVEDPEKRAK----LLKLGVD 128 (202)
T ss_pred HHHHHHhcCCCEEEEEeeCCH---------HHHHHHHHHHHH-------cCCeEEEEEeCCCCHHHHHH----HHHCCCC
Confidence 357778999999988743211 122233333332 1334444 355555554443 2334566
Q ss_pred eEEEc-CccCCCc-hhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecch
Q 015981 210 GYWIG-GFGLGES-MEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 210 G~~Ig-Gl~~ge~-~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~~ 268 (397)
.+.++ +...+.. .....+.++.+.+. .+.|..+- |+ +|.++..+...|+|.+-...
T Consensus 129 ~v~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~i~~~GGI-~~~~i~~~~~~Gad~vvvGs 187 (202)
T cd04726 129 IVILHRGIDAQAAGGWWPEDDLKKVKKL--LGVKVAVAGGI-TPDTLPEFKKAGADIVIVGR 187 (202)
T ss_pred EEEEcCcccccccCCCCCHHHHHHHHhh--cCCCEEEECCc-CHHHHHHHHhcCCCEEEEee
Confidence 55552 1111110 11223444444433 25666654 55 69999999999999887653
No 295
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=29.80 E-value=1.6e+02 Score=27.06 Aligned_cols=64 Identities=13% Similarity=0.208 Sum_probs=41.1
Q ss_pred HHHHHhcCCceEEEcCccCCCch-hhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEec
Q 015981 200 AQEVAVRNVSGYWIGGFGLGESM-EERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 200 a~~l~~~~~~G~~IgGl~~ge~~-~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~ 266 (397)
++.+.+.|.+.+.+..-....+. ++..++++.+.+.. +.| .+.++.++.++..+.+.|+|.+-+
T Consensus 85 ~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g--~~~-iiv~v~t~~ea~~a~~~G~d~i~~ 149 (219)
T cd04729 85 VDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY--NCL-LMADISTLEEALNAAKLGFDIIGT 149 (219)
T ss_pred HHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh--CCe-EEEECCCHHHHHHHHHcCCCEEEc
Confidence 35566678886655432211111 24566777666654 233 466899999999999999999853
No 296
>PLN02535 glycolate oxidase
Probab=29.80 E-value=78 Score=32.02 Aligned_cols=40 Identities=18% Similarity=0.160 Sum_probs=34.5
Q ss_pred HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 226 PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++.|+++.+.. +.|..+=|+-+|.+...+++.|+|.++.+
T Consensus 212 W~~i~~lr~~~--~~PvivKgV~~~~dA~~a~~~GvD~I~vs 251 (364)
T PLN02535 212 WKDIEWLRSIT--NLPILIKGVLTREDAIKAVEVGVAGIIVS 251 (364)
T ss_pred HHHHHHHHhcc--CCCEEEecCCCHHHHHHHHhcCCCEEEEe
Confidence 56677777764 48998999999999999999999999876
No 297
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=29.80 E-value=1.5e+02 Score=29.25 Aligned_cols=66 Identities=15% Similarity=0.183 Sum_probs=39.4
Q ss_pred HHHHHhcCCceEEEcCccCC---------CchhhHHHHHHHHHcCCCC-CCccccc-CCCChHHHHHHHHcCCcEEec
Q 015981 200 AQEVAVRNVSGYWIGGFGLG---------ESMEERPSLLNAVTDNLPK-DWPRMIC-GLGLPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 200 a~~l~~~~~~G~~IgGl~~g---------e~~~~~~~~v~~~~~~Lp~-~kpr~l~-G~g~P~~il~~v~~GvD~FD~ 266 (397)
++.+.+.|++++.+|+-+.. .... ....+..+.+.++. +.|.+.- |+.+|.+|..+.++|.|..=.
T Consensus 149 A~~l~~aGaD~I~vg~g~G~~~~t~~~~g~g~p-~~~~i~~v~~~~~~~~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 149 ARDLIDAGADGVKVGIGPGSICTTRIVTGVGVP-QATAVADVAAAARDYGVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred HHHHHhcCCCEEEECCCCCcCcccceeCCCCCC-HHHHHHHHHHHHhhcCCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 55667789999988532100 0001 12333334333332 4554333 889999999999999996543
No 298
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=29.75 E-value=1.4e+02 Score=31.54 Aligned_cols=66 Identities=21% Similarity=0.291 Sum_probs=38.9
Q ss_pred HHHHHHhcCCceEEEcCccCC---Cc-------hhhHHHHHHHHHcCCCC-CCccccc--CCCChHHHHHHHHcCCcEEe
Q 015981 199 CAQEVAVRNVSGYWIGGFGLG---ES-------MEERPSLLNAVTDNLPK-DWPRMIC--GLGLPEEVLQGVAAGVDLFD 265 (397)
Q Consensus 199 sa~~l~~~~~~G~~IgGl~~g---e~-------~~~~~~~v~~~~~~Lp~-~kpr~l~--G~g~P~~il~~v~~GvD~FD 265 (397)
-++.+.+.|++++.+| ++.| .+ ..+. ..+..+.+.... +.| ++. |+.+|.+|..|+++|.|..=
T Consensus 295 ~a~~~~~aGad~I~vg-~g~Gs~~~t~~~~~~g~p~~-~ai~~~~~~~~~~~v~-vIadGGi~~~~di~kAla~GA~~Vm 371 (495)
T PTZ00314 295 QAKNLIDAGADGLRIG-MGSGSICITQEVCAVGRPQA-SAVYHVARYARERGVP-CIADGGIKNSGDICKALALGADCVM 371 (495)
T ss_pred HHHHHHHcCCCEEEEC-CcCCcccccchhccCCCChH-HHHHHHHHHHhhcCCe-EEecCCCCCHHHHHHHHHcCCCEEE
Confidence 3556777899998774 2222 11 1121 222222222211 234 466 99999999999999999765
Q ss_pred cc
Q 015981 266 SA 267 (397)
Q Consensus 266 ~~ 267 (397)
.-
T Consensus 372 ~G 373 (495)
T PTZ00314 372 LG 373 (495)
T ss_pred EC
Confidence 44
No 299
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=29.61 E-value=1.5e+02 Score=30.54 Aligned_cols=78 Identities=15% Similarity=0.209 Sum_probs=46.2
Q ss_pred eEEeecCCCC-----HHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcc---cccCCCC----h
Q 015981 183 VFGSIVGGSN-----IEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPR---MICGLGL----P 250 (397)
Q Consensus 183 lf~~iqGg~~-----~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr---~l~G~g~----P 250 (397)
-+++|||+.. .+|- ..+.+.|.-|+ ||+ .+.+++++.+.|+.+...|+.++|- .++.... +
T Consensus 13 ryPii~gpMa~Giss~eLV----aAvs~AGgLG~-lga--g~l~~e~l~~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~ 85 (418)
T cd04742 13 RYAYVAGAMARGIASAELV----VAMGKAGMLGF-FGA--GGLPLDEVEQAIERIQAALGNGEPYGVNLIHSPDEPELEE 85 (418)
T ss_pred CccEECCcccCCCCCHHHH----HHHHhCCCeee-ecC--CCCCHHHHHHHHHHHHHhccCCCCeEEeeecCCCCchhHH
Confidence 4677776544 3443 34455554443 332 2456788889999998888767883 1222222 2
Q ss_pred HHHHHHHHcCCcEEecc
Q 015981 251 EEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 251 ~~il~~v~~GvD~FD~~ 267 (397)
..+-.+++.||.++..+
T Consensus 86 ~~v~l~le~gV~~ve~s 102 (418)
T cd04742 86 GLVDLFLRHGVRVVEAS 102 (418)
T ss_pred HHHHHHHHcCCCEEEec
Confidence 23445567999987765
No 300
>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed
Probab=29.56 E-value=1.1e+02 Score=30.76 Aligned_cols=69 Identities=20% Similarity=0.234 Sum_probs=42.2
Q ss_pred HHHHHHHHHhcCCceEEE--cCccC---CC-chh---hHHHHHHHHHcCCCCCCcccccCCC-Ch---------------
Q 015981 196 RKRCAQEVAVRNVSGYWI--GGFGL---GE-SME---ERPSLLNAVTDNLPKDWPRMICGLG-LP--------------- 250 (397)
Q Consensus 196 R~~sa~~l~~~~~~G~~I--gGl~~---ge-~~~---~~~~~v~~~~~~Lp~~kpr~l~G~g-~P--------------- 250 (397)
-.++.+++.+.+++-+++ |-.+. ++ .+. --.+.++++.+.+| +.|..|+|.. .|
T Consensus 175 PeeA~~Fv~~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~-~vPLVLHGgSG~~~~~~~~~~~~g~~~~ 253 (347)
T PRK09196 175 PEEAADFVKKTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLP-NTHLVMHGSSSVPQELLDIINEYGGDMP 253 (347)
T ss_pred HHHHHHHHHHhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCC-CCCEEEeCCCCCCHHHHHHHHHhcCCcc
Confidence 345666777778887665 32221 10 111 23667888888885 6899899775 44
Q ss_pred -------HHHHHHHHcCCcEEe
Q 015981 251 -------EEVLQGVAAGVDLFD 265 (397)
Q Consensus 251 -------~~il~~v~~GvD~FD 265 (397)
++|..||.+||-=|-
T Consensus 254 ~~~G~~~e~i~~ai~~GI~KIN 275 (347)
T PRK09196 254 ETYGVPVEEIQEGIKHGVRKVN 275 (347)
T ss_pred ccCCCCHHHHHHHHHCCCceEE
Confidence 556666677665444
No 301
>cd03307 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM.
Probab=29.52 E-value=4.9e+02 Score=25.33 Aligned_cols=114 Identities=11% Similarity=0.109 Sum_probs=53.5
Q ss_pred hHHHHHHhcCCcEEEEcCCCCCCC-CCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHhcCC
Q 015981 130 EYMEMITSMKPNLWATLADEVPAW-ANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNV 208 (397)
Q Consensus 130 ~~~~~q~~i~pDi~~~L~d~~~~~-~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~~~~ 208 (397)
+|++.|...|+|+++..|+..... .+.+.-++-+ ..+.++.++.-+. ...+-.+.|+... ..+.+.+.++
T Consensus 175 ~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~---~p~~k~i~~~i~~-~~~ilh~cG~~~~-----~l~~~~~~g~ 245 (326)
T cd03307 175 EYAKAQLEAGADIITIADPTASPELISPEFYEEFA---LPYHKKIVKELHG-CPTILHICGNTTP-----ILEYIAQCGF 245 (326)
T ss_pred HHHHHHHHcCCCEEEecCCCccccccCHHHHHHHH---HHHHHHHHHHHhc-CCcEEEECCCChh-----HHHHHHHcCC
Confidence 577778888999876664332221 2444433322 2222222221111 2234444565422 2445666677
Q ss_pred ceEEEcCccCCCchhhHHHHHH---HHHcCCCCCCcccccCCCChHHHHHHHH
Q 015981 209 SGYWIGGFGLGESMEERPSLLN---AVTDNLPKDWPRMICGLGLPEEVLQGVA 258 (397)
Q Consensus 209 ~G~~IgGl~~ge~~~~~~~~v~---~~~~~Lp~~kpr~l~G~g~P~~il~~v~ 258 (397)
+++.++ .+.+..+..+.+. .+.-++ .|..++-.|+|++|-..+.
T Consensus 246 d~~~~d---~~~dl~e~~~~~g~~~~i~Gni---dp~~~l~~gt~e~i~~~~~ 292 (326)
T cd03307 246 DGISVD---EKVDVKTAKEIVGGRAALIGNV---SPSQTLLNGTPEDVKAEAR 292 (326)
T ss_pred Ceeccc---ccCCHHHHHHHcCCceEEEeCC---ChHHHhcCCCHHHHHHHHH
Confidence 776543 2333333333322 011122 1223455788887776654
No 302
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=29.03 E-value=5.4e+02 Score=24.90 Aligned_cols=83 Identities=13% Similarity=0.062 Sum_probs=46.9
Q ss_pred CCeEEeecCCCCHHHHHHHHHHHHhc---CCceEEEc--------CccCCCchhhHHHHHHHHHcCCCCCCcccc-cCCC
Q 015981 181 GAVFGSIVGGSNIEERKRCAQEVAVR---NVSGYWIG--------GFGLGESMEERPSLLNAVTDNLPKDWPRMI-CGLG 248 (397)
Q Consensus 181 ~~lf~~iqGg~~~~lR~~sa~~l~~~---~~~G~~Ig--------Gl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l-~G~g 248 (397)
..+++.|-|. .+.-.++++.+.+. +++++-|- +-..+.+++...++++++.+.+ ++|..+ +..+
T Consensus 92 ~pvivsi~g~--~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~--~iPv~vKl~p~ 167 (294)
T cd04741 92 KPFFISVTGS--AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAY--SIPVGVKTPPY 167 (294)
T ss_pred CeEEEECCCC--HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhc--CCCEEEEeCCC
Confidence 3477777766 55555666666653 45665541 1113445677788888888775 467543 2222
Q ss_pred -ChHHHHHHH----Hc--CCcEEecc
Q 015981 249 -LPEEVLQGV----AA--GVDLFDSA 267 (397)
Q Consensus 249 -~P~~il~~v----~~--GvD~FD~~ 267 (397)
++.++..++ +. |+|.+-..
T Consensus 168 ~~~~~~~~~a~~l~~~~~G~~gi~~~ 193 (294)
T cd04741 168 TDPAQFDTLAEALNAFACPISFITAT 193 (294)
T ss_pred CCHHHHHHHHHHHhccccCCcEEEEE
Confidence 334444333 35 77766643
No 303
>PRK08005 epimerase; Validated
Probab=28.85 E-value=4.7e+02 Score=24.20 Aligned_cols=118 Identities=13% Similarity=0.087 Sum_probs=64.8
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEee-cCCCCHHHHHHHHHHHHh
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSI-VGGSNIEERKRCAQEVAV 205 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~i-qGg~~~~lR~~sa~~l~~ 205 (397)
.|+.|++.....|+|++..=.+.++ ...|++++.++. +.-.|+. -.++..+.-+..+..+
T Consensus 69 ~P~~~i~~~~~~gad~It~H~Ea~~----------~~~~~l~~Ik~~-------G~k~GlAlnP~Tp~~~i~~~l~~v-- 129 (210)
T PRK08005 69 SPQRWLPWLAAIRPGWIFIHAESVQ----------NPSEILADIRAI-------GAKAGLALNPATPLLPYRYLALQL-- 129 (210)
T ss_pred CHHHHHHHHHHhCCCEEEEcccCcc----------CHHHHHHHHHHc-------CCcEEEEECCCCCHHHHHHHHHhc--
Confidence 5999999999999998876544221 244566666542 3333333 2334444333333332
Q ss_pred cCCceEEEcCccC---CCch-hhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 206 RNVSGYWIGGFGL---GESM-EERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 206 ~~~~G~~IgGl~~---ge~~-~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
+...|=.... |.+. ++..+=|+.+.+.+++ ...-+=|--++..+..+++.|+|+|-.-
T Consensus 130 ---D~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~~~-~~I~VDGGI~~~~i~~l~~aGad~~V~G 191 (210)
T PRK08005 130 ---DALMIMTSEPDGRGQQFIAAMCEKVSQSREHFPA-AECWADGGITLRAARLLAAAGAQHLVIG 191 (210)
T ss_pred ---CEEEEEEecCCCccceecHHHHHHHHHHHHhccc-CCEEEECCCCHHHHHHHHHCCCCEEEEC
Confidence 2222211111 1111 1223334444445544 2333447678999999999999999865
No 304
>TIGR01464 hemE uroporphyrinogen decarboxylase. This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products.
Probab=28.35 E-value=5.7e+02 Score=25.01 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=57.2
Q ss_pred hhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHhcCC
Q 015981 129 VEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNV 208 (397)
Q Consensus 129 e~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~~~~ 208 (397)
-+|++.|...|+|+++.. |......+.+.-++-+.-..+.+-+.+.... .+..+-.+.|+... ..+.+.+.++
T Consensus 183 ~~~~~~~~eaGad~i~i~-d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~-~~~~ilh~cg~~~~-----~~~~~~~~~~ 255 (338)
T TIGR01464 183 IEYLVEQVKAGAQAVQIF-DSWAGALSPEDFEEFVLPYLKKIIEEVKARL-PNVPVILFAKGAGH-----LLEELAETGA 255 (338)
T ss_pred HHHHHHHHHcCCCEEEEE-CCccccCCHHHHHHHHHHHHHHHHHHHHHhC-CCCCEEEEeCCcHH-----HHHHHHhcCC
Confidence 457777778999998776 4433345555544444333333223232210 12233445676542 2456777788
Q ss_pred ceEEEcCccCCCchhhHHHHHH---HHHcCCCCCCcccccCCCChHHHHHHHH
Q 015981 209 SGYWIGGFGLGESMEERPSLLN---AVTDNLPKDWPRMICGLGLPEEVLQGVA 258 (397)
Q Consensus 209 ~G~~IgGl~~ge~~~~~~~~v~---~~~~~Lp~~kpr~l~G~g~P~~il~~v~ 258 (397)
+++.++- ..+..+..+.+. .+.-+++ |. ++ .|+|++|...+.
T Consensus 256 ~~~s~d~---~~dl~e~~~~~~~~~~i~Gni~---p~-~l-~gt~e~i~~~v~ 300 (338)
T TIGR01464 256 DVVGLDW---TVDLKEARKRVGPGVAIQGNLD---PA-VL-YAPEEALEEKVE 300 (338)
T ss_pred CEEEeCC---CCCHHHHHHHhCCCeeEEeCCC---hH-Hh-cCCHHHHHHHHH
Confidence 8887753 233322222221 1112222 33 33 467877777654
No 305
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=28.26 E-value=5.8e+02 Score=25.08 Aligned_cols=84 Identities=12% Similarity=0.028 Sum_probs=51.1
Q ss_pred CeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCc--h-----------------hhHHHHHHHHHcCCCCCCcc
Q 015981 182 AVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGES--M-----------------EERPSLLNAVTDNLPKDWPR 242 (397)
Q Consensus 182 ~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~--~-----------------~~~~~~v~~~~~~Lp~~kpr 242 (397)
+++.=+-++. .+ -.+.++.+.+.|++|+.+.+-..+.. . ....+.+..+...+ +.|.
T Consensus 167 PV~vKl~p~~-~~-~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~--~ipI 242 (334)
T PRK07565 167 PVAVKLSPYF-SN-LANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV--GADL 242 (334)
T ss_pred cEEEEeCCCc-hh-HHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc--CCCE
Confidence 3555554433 22 34556667778999988755322111 0 11134454454444 4565
Q ss_pred ccc-CCCChHHHHHHHHcCCcEEecchh
Q 015981 243 MIC-GLGLPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 243 ~l~-G~g~P~~il~~v~~GvD~FD~~~p 269 (397)
.-. |+-++.|+..++.+|+|.+-..-+
T Consensus 243 ig~GGI~s~~Da~e~l~aGA~~V~v~t~ 270 (334)
T PRK07565 243 AATTGVHDAEDVIKMLLAGADVVMIASA 270 (334)
T ss_pred EEECCCCCHHHHHHHHHcCCCceeeehH
Confidence 544 678999999999999999887744
No 306
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=28.25 E-value=1.5e+02 Score=28.76 Aligned_cols=65 Identities=18% Similarity=0.139 Sum_probs=43.8
Q ss_pred HHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhH
Q 015981 201 QEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIY 270 (397)
Q Consensus 201 ~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~ 270 (397)
++..+.+++.+.+.++ ++++..+.++.+.. ...+...-..|=-+|.++..-...|||+|-...||
T Consensus 202 ~ea~~~GaDiI~lDn~----~~e~l~~~v~~l~~-~~~~~~leasGGI~~~ni~~ya~~GvD~is~gal~ 266 (277)
T TIGR01334 202 LTVLQASPDILQLDKF----TPQQLHHLHERLKF-FDHIPTLAAAGGINPENIADYIEAGIDLFITSAPY 266 (277)
T ss_pred HHHHHcCcCEEEECCC----CHHHHHHHHHHHhc-cCCCEEEEEECCCCHHHHHHHHhcCCCEEEeCcce
Confidence 3455688888888754 45566666654321 11122223457779999999999999999888775
No 307
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=28.23 E-value=3.4e+02 Score=23.14 Aligned_cols=65 Identities=12% Similarity=0.064 Sum_probs=39.2
Q ss_pred HHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCC------ChHHHHHHHHcCCc-EEecc
Q 015981 202 EVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLG------LPEEVLQGVAAGVD-LFDSA 267 (397)
Q Consensus 202 ~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g------~P~~il~~v~~GvD-~FD~~ 267 (397)
.+.+.+++..++..+. +.......++++.+.+..+.+.+.++=|.. .+.+...+-++|+| +|+..
T Consensus 49 ~a~~~~~d~V~lS~~~-~~~~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~ 120 (137)
T PRK02261 49 AAIETDADAILVSSLY-GHGEIDCRGLREKCIEAGLGDILLYVGGNLVVGKHDFEEVEKKFKEMGFDRVFPPG 120 (137)
T ss_pred HHHHcCCCEEEEcCcc-ccCHHHHHHHHHHHHhcCCCCCeEEEECCCCCCccChHHHHHHHHHcCCCEEECcC
Confidence 3345677777776544 344455677777777775655444443433 23455678889987 66644
No 308
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=28.21 E-value=4.5e+02 Score=23.71 Aligned_cols=121 Identities=12% Similarity=0.114 Sum_probs=59.7
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHhc
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVR 206 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~~ 206 (397)
+++++++.....|+|++...+... . ... ...++++ + .+...++..+-.....|.+. +.+
T Consensus 72 d~~~~i~~~~~~g~d~v~vh~~~~--~----~~~----~~~~~~~---~----~~~~~g~~~~~~t~~e~~~~---~~~- 130 (220)
T PRK05581 72 NPDRYVPDFAKAGADIITFHVEAS--E----HIH----RLLQLIK---S----AGIKAGLVLNPATPLEPLED---VLD- 130 (220)
T ss_pred CHHHHHHHHHHcCCCEEEEeeccc--h----hHH----HHHHHHH---H----cCCEEEEEECCCCCHHHHHH---HHh-
Confidence 577788888899999987764321 1 111 1122222 1 12345555432223334332 221
Q ss_pred CCceEEEcCccCC---Cch-hhHHHHHHHHHcCCCCC-C-ccc-ccCCCChHHHHHHHHcCCcEEecch
Q 015981 207 NVSGYWIGGFGLG---ESM-EERPSLLNAVTDNLPKD-W-PRM-ICGLGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 207 ~~~G~~IgGl~~g---e~~-~~~~~~v~~~~~~Lp~~-k-pr~-l~G~g~P~~il~~v~~GvD~FD~~~ 268 (397)
..+.+.+++...| ... .+..+.++.+.+..+.. . |.. +-|==+|.++..+...|+|.|-...
T Consensus 131 ~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgS 199 (220)
T PRK05581 131 LLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGS 199 (220)
T ss_pred hCCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEECh
Confidence 2344444443222 211 12233444443333321 1 333 4453377999999999999887653
No 309
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=27.96 E-value=5e+02 Score=24.24 Aligned_cols=94 Identities=20% Similarity=0.205 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHHHhcCCceEEE-------------cCccCCCchhhHHHHHHHHH
Q 015981 167 VKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWI-------------GGFGLGESMEERPSLLNAVT 233 (397)
Q Consensus 167 ~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~I-------------gGl~~ge~~~~~~~~v~~~~ 233 (397)
.+|.++.+..-+.....+++-..|.+.+.-.++++.+.+.. +++-| .|-.+..+++...++++++.
T Consensus 58 ~~~~~~~~~~~~~~~~p~~vqi~g~~~~~~~~aa~~~~~~~-~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr 136 (233)
T cd02911 58 LEFIEGEIKALKDSNVLVGVNVRSSSLEPLLNAAALVAKNA-AILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALK 136 (233)
T ss_pred HHHHHHHHHHhhccCCeEEEEecCCCHHHHHHHHHHHhhcC-CEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHH
Q ss_pred cCCCCCCcccc-cCCCC----hHHHHHHHHcCCcEE
Q 015981 234 DNLPKDWPRMI-CGLGL----PEEVLQGVAAGVDLF 264 (397)
Q Consensus 234 ~~Lp~~kpr~l-~G~g~----P~~il~~v~~GvD~F 264 (397)
+. +.|..+ +..|. ..-.-.+.+.|+|.+
T Consensus 137 ~~---~~pVsvKir~g~~~~~~~la~~l~~aG~d~i 169 (233)
T cd02911 137 ET---GVPVSVKIRAGVDVDDEELARLIEKAGADII 169 (233)
T ss_pred hc---CCCEEEEEcCCcCcCHHHHHHHHHHhCCCEE
No 310
>cd00739 DHPS DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.
Probab=27.66 E-value=2.8e+02 Score=26.40 Aligned_cols=80 Identities=21% Similarity=0.157 Sum_probs=48.6
Q ss_pred HHHHHHhcCCceEEEcCccC--C----CchhhHHHH---HHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchh
Q 015981 199 CAQEVAVRNVSGYWIGGFGL--G----ESMEERPSL---LNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 199 sa~~l~~~~~~G~~IgGl~~--g----e~~~~~~~~---v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p 269 (397)
-|+++.+.|.+-+-|||-+. | ...+|+.++ |+.+.+.. +.| .-.-..+|.-+-.|++.|+|++-+...
T Consensus 29 ~a~~~~~~GAdiIDIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~--~~p-lSIDT~~~~v~e~al~~G~~iINdisg 105 (257)
T cd00739 29 HAEKMIAEGADIIDIGGESTRPGADPVSVEEELERVIPVLEALRGEL--DVL-ISVDTFRAEVARAALEAGADIINDVSG 105 (257)
T ss_pred HHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC--CCc-EEEeCCCHHHHHHHHHhCCCEEEeCCC
Confidence 35555677888899997653 1 122344343 34443322 344 344667899999999999999987532
Q ss_pred H--------Hhhhcceeecc
Q 015981 270 Y--------HLTIGGFALTF 281 (397)
Q Consensus 270 ~--------~~a~~G~al~f 281 (397)
. ..+++|.+++.
T Consensus 106 ~~~~~~~~~l~~~~~~~vV~ 125 (257)
T cd00739 106 GSDDPAMLEVAAEYGAPLVL 125 (257)
T ss_pred CCCChHHHHHHHHcCCCEEE
Confidence 1 13456666554
No 311
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=27.16 E-value=4.8e+02 Score=23.93 Aligned_cols=42 Identities=31% Similarity=0.391 Sum_probs=32.5
Q ss_pred HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 226 PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
.+.++.....+|.+.|.+..|==++.++....+.|+|.+=..
T Consensus 138 ~~~l~~l~~~~~~~ipvvaiGGI~~~n~~~~~~aGa~~vav~ 179 (206)
T PRK09140 138 PAGIKALRAVLPPDVPVFAVGGVTPENLAPYLAAGAAGFGLG 179 (206)
T ss_pred HHHHHHHHhhcCCCCeEEEECCCCHHHHHHHHHCCCeEEEEe
Confidence 345666777777568877776559999999999999987644
No 312
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=27.14 E-value=87 Score=31.91 Aligned_cols=40 Identities=25% Similarity=0.270 Sum_probs=33.8
Q ss_pred HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 226 PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++-|+++.+.. +-|..+-|+.++.+...+++.|+|.++.+
T Consensus 242 W~~i~~lr~~~--~~pvivKgV~~~~dA~~a~~~G~d~I~vs 281 (383)
T cd03332 242 WEDLAFLREWT--DLPIVLKGILHPDDARRAVEAGVDGVVVS 281 (383)
T ss_pred HHHHHHHHHhc--CCCEEEecCCCHHHHHHHHHCCCCEEEEc
Confidence 46667777765 46888889999999999999999999977
No 313
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=27.10 E-value=53 Score=33.02 Aligned_cols=40 Identities=25% Similarity=0.340 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 226 PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++-|+++.+.+ +.|..+=|+-++.++..+++.|||.+|.+
T Consensus 214 w~~i~~~~~~~--~~pvivKgv~~~~da~~~~~~G~~~i~vs 253 (356)
T PF01070_consen 214 WDDIEWIRKQW--KLPVIVKGVLSPEDAKRAVDAGVDGIDVS 253 (356)
T ss_dssp HHHHHHHHHHC--SSEEEEEEE-SHHHHHHHHHTT-SEEEEE
T ss_pred HHHHHHHhccc--CCceEEEecccHHHHHHHHhcCCCEEEec
Confidence 45677888876 47999999999999999999999999988
No 314
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=27.00 E-value=2.1e+02 Score=26.23 Aligned_cols=66 Identities=11% Similarity=0.099 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCceEEEcCccCCC-chhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEe
Q 015981 198 RCAQEVAVRNVSGYWIGGFGLGE-SMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFD 265 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~ge-~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD 265 (397)
+.++.+.+.+++.+.|-.+.... ......++++.+.+.. +.|..+- |+.+++++..+++.|+|.+-
T Consensus 33 ~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~--~~pv~~~GgI~~~e~~~~~~~~Gad~vv 100 (234)
T cd04732 33 EVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAV--GIPVQVGGGIRSLEDIERLLDLGVSRVI 100 (234)
T ss_pred HHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhc--CCCEEEeCCcCCHHHHHHHHHcCCCEEE
Confidence 34556666777777666554321 1122345666666654 3565543 77899999999999999753
No 315
>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.
Probab=26.97 E-value=7.8e+02 Score=26.43 Aligned_cols=124 Identities=11% Similarity=0.056 Sum_probs=71.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCC-CCCeEEeecCC-----CCHHHHHHHHHHHHhcCCc------eEEEcCccCCCc
Q 015981 154 ANNKRNKTSVDRTVKWLDECIARSPA-GGAVFGSIVGG-----SNIEERKRCAQEVAVRNVS------GYWIGGFGLGES 221 (397)
Q Consensus 154 ~~~kr~~~sverT~~w~~~~l~~~~~-~~~lf~~iqGg-----~~~~lR~~sa~~l~~~~~~------G~~IgGl~~ge~ 221 (397)
.+.+++...+..+.+++++.-..... .+.-|.+--++ .+.+.-.+.++.+.+.+.+ -+.+.--..-..
T Consensus 138 ~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~ 217 (564)
T TIGR00970 138 ASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTT 217 (564)
T ss_pred CCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccC
Confidence 45556666666666666543111000 01223444333 3677777788888777653 233332222345
Q ss_pred hhhHHHHHHHHHcCCCCCC--c--cccc-CCC-ChHHHHHHHHcCCcEEecchhHHhhh-ccee
Q 015981 222 MEERPSLLNAVTDNLPKDW--P--RMIC-GLG-LPEEVLQGVAAGVDLFDSAYIYHLTI-GGFA 278 (397)
Q Consensus 222 ~~~~~~~v~~~~~~Lp~~k--p--r~l~-G~g-~P~~il~~v~~GvD~FD~~~p~~~a~-~G~a 278 (397)
+.++.++++.+.+.+|... | .|.+ -.| .-..-+.|+..|+|.||++. .-..+ .|.+
T Consensus 218 P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~gt~-~G~GERaGNa 280 (564)
T TIGR00970 218 PNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIEGCL-FGNGERTGNV 280 (564)
T ss_pred HHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEEeec-CcCCccccCc
Confidence 6778899999988887532 2 3444 222 25577889999999999883 33333 5544
No 316
>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase. This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport.
Probab=26.74 E-value=6.6e+02 Score=26.97 Aligned_cols=138 Identities=14% Similarity=0.042 Sum_probs=71.5
Q ss_pred ceecChhhHHHHHH-------hcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCC--CCCeEEeecCCCCH
Q 015981 123 RRLIKPVEYMEMIT-------SMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPA--GGAVFGSIVGGSNI 193 (397)
Q Consensus 123 ~~~ltpe~~~~~q~-------~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~--~~~lf~~iqGg~~~ 193 (397)
|..+...+..+.|- ..|+.-+|.. .-.+.+++++.++....+..+.-+.... ....+|+..- .+
T Consensus 360 R~~l~~~~lf~~QlrAI~ra~~~G~~~Im~P-----mV~t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIE--tp 432 (565)
T TIGR01417 360 RLALEREEILRTQLRAILRASAYGKLRIMFP-----MVATVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIE--IP 432 (565)
T ss_pred hhcccCHHHHHHHHHHHHHHHhcCCCeEEec-----CCCCHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEc--CH
Confidence 45555555555552 2344444332 2345556666555554444332222111 1234444431 22
Q ss_pred HHHHHHHHHHHhcCCceEEEcCccC--------------C---C-chhhHHHHHHHHHcCC-CCCCcccccC--CCChHH
Q 015981 194 EERKRCAQEVAVRNVSGYWIGGFGL--------------G---E-SMEERPSLLNAVTDNL-PKDWPRMICG--LGLPEE 252 (397)
Q Consensus 194 ~lR~~sa~~l~~~~~~G~~IgGl~~--------------g---e-~~~~~~~~v~~~~~~L-p~~kpr~l~G--~g~P~~ 252 (397)
..- ..++++++ +++++.||=-.+ + . ......++++.+.+.- ...+|.-+.| .++|..
T Consensus 433 aav-~~~d~ia~-~vDf~sIGtnDLsqy~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~g~~v~vCGe~a~~p~~ 510 (565)
T TIGR01417 433 SAA-LIADHLAK-EVDFFSIGTNDLTQYTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAEGIWVGMCGEMAGDERA 510 (565)
T ss_pred HHH-HhHHHHHh-hCCEEEEChhHHHHHHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHcCCeEEEeCCcCCCHHH
Confidence 222 23455655 799998874321 1 0 1122334444433221 2478887766 589999
Q ss_pred HHHHHHcCCcEEecchh
Q 015981 253 VLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 253 il~~v~~GvD~FD~~~p 269 (397)
+..++.+|+|.|=.+-+
T Consensus 511 ~~~l~~~G~~~lsv~~~ 527 (565)
T TIGR01417 511 IPLLLGLGLRELSMSAS 527 (565)
T ss_pred HHHHHHCCCCEEEEChH
Confidence 99999999999976643
No 317
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=26.65 E-value=1.4e+02 Score=28.04 Aligned_cols=49 Identities=20% Similarity=0.294 Sum_probs=28.8
Q ss_pred cCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCc
Q 015981 206 RNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVD 262 (397)
Q Consensus 206 ~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD 262 (397)
.+.+.+.|||- .|.+ +.+.+.++.+...-. +.|..++ +|+|..+ ..|+|
T Consensus 24 ~gtdai~vGGS-~~v~-~~~~~~~~~ik~~~~-~~Pvilf-p~~~~~i----~~~aD 72 (219)
T cd02812 24 SGTDAIMVGGS-DGVS-STLDNVVRLIKRIRR-PVPVILF-PSNPEAV----SPGAD 72 (219)
T ss_pred cCCCEEEECCc-cchh-hhHHHHHHHHHHhcC-CCCEEEe-CCCcccc----CcCCC
Confidence 78999999994 3443 334444443333222 5677666 6777655 45555
No 318
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=26.65 E-value=2.1e+02 Score=25.80 Aligned_cols=29 Identities=17% Similarity=0.106 Sum_probs=24.0
Q ss_pred CcccccCCCChHHHHHHHHcCCcEEecch
Q 015981 240 WPRMICGLGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 240 kpr~l~G~g~P~~il~~v~~GvD~FD~~~ 268 (397)
.....-||-++.+.-.+-.+|||.+=..|
T Consensus 204 ~~via~gVe~~~~~~~l~~~Gi~~~QG~~ 232 (241)
T smart00052 204 LQVVAEGVETPEQLDLLRSLGCDYGQGYL 232 (241)
T ss_pred CeEEEecCCCHHHHHHHHHcCCCEEeece
Confidence 44566799999999999999999886543
No 319
>TIGR00510 lipA lipoate synthase. The family shows strong sequence conservation.
Probab=26.64 E-value=2.6e+02 Score=27.46 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhcCCceEEEcCccCC----CchhhHHHHHHHHHcCCCCCCcccccC--CCChHHHHHHHHcCCcEEec
Q 015981 195 ERKRCAQEVAVRNVSGYWIGGFGLG----ESMEERPSLLNAVTDNLPKDWPRMICG--LGLPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 195 lR~~sa~~l~~~~~~G~~IgGl~~g----e~~~~~~~~v~~~~~~Lp~~kpr~l~G--~g~P~~il~~v~~GvD~FD~ 266 (397)
.-.+.|+.+.+.|+.-+.|-|...+ ...+.+.++|+.+.+.+|.-..+.+.. .|....+-...+.|.|+|-.
T Consensus 95 ei~~~a~~~~~~GlkevvLTsv~~ddl~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv~~h 172 (302)
T TIGR00510 95 EPAKLAETIKDMGLKYVVITSVDRDDLEDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDVYNH 172 (302)
T ss_pred HHHHHHHHHHHCCCCEEEEEeecCCCcccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchhhcc
Confidence 3344455555556555555443221 112346677777776666544444332 23444444455677775443
No 320
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=26.56 E-value=1.3e+02 Score=27.67 Aligned_cols=51 Identities=27% Similarity=0.412 Sum_probs=37.1
Q ss_pred CCHHHHHHHHHHHHhcCCc-eEEEcCccCCCchhh-HHHHHHHHHcCCCCCCc
Q 015981 191 SNIEERKRCAQEVAVRNVS-GYWIGGFGLGESMEE-RPSLLNAVTDNLPKDWP 241 (397)
Q Consensus 191 ~~~~lR~~sa~~l~~~~~~-G~~IgGl~~ge~~~~-~~~~v~~~~~~Lp~~kp 241 (397)
-..+.|.++|+.+++.|+. |+.|.=+-.-+..++ ..++++.+.+.||.+.-
T Consensus 68 ~sl~~Rl~Aa~k~a~aGy~Vg~~~~PIi~~egW~e~Y~~l~~~l~~~l~~~~~ 120 (199)
T TIGR00620 68 SPLDKRIEAAVKVAKAGYPLGFIIAPIYIHEGWKEGYRNLLEKLDEALPQDLR 120 (199)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeeceEeeCChHHHHHHHHHHHHHhCCHhhh
Confidence 4567899999999988766 676665444455544 57888888889986553
No 321
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=26.48 E-value=2e+02 Score=28.00 Aligned_cols=66 Identities=17% Similarity=0.089 Sum_probs=44.9
Q ss_pred HHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhh
Q 015981 202 EVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLT 273 (397)
Q Consensus 202 ~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a 273 (397)
+..+.+.+-+.+..+ +++++.+.++.. .+......=..|=-++..|..-...|||.|-+.++|..+
T Consensus 203 eAl~agaDiImLDNm----~~e~~~~av~~l--~~~~~~~lEaSGgIt~~ni~~yA~tGVD~IS~galths~ 268 (280)
T COG0157 203 EALEAGADIIMLDNM----SPEELKEAVKLL--GLAGRALLEASGGITLENIREYAETGVDVISVGALTHSA 268 (280)
T ss_pred HHHHcCCCEEEecCC----CHHHHHHHHHHh--ccCCceEEEEeCCCCHHHHHHHhhcCCCEEEeCccccCC
Confidence 344567888877754 456666666543 232211122457779999999999999999999988554
No 322
>TIGR00284 dihydropteroate synthase-related protein. This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.
Probab=26.37 E-value=4.7e+02 Score=27.70 Aligned_cols=84 Identities=14% Similarity=0.094 Sum_probs=55.6
Q ss_pred eEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCc
Q 015981 183 VFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVD 262 (397)
Q Consensus 183 lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD 262 (397)
+||=|......+.-.+-++++.+.|.+-+-|||-+.....+.+..+|+.+.+.. +.|. -.-..+|..+-.|++.|+|
T Consensus 154 v~aEI~~a~~l~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~--~~pI-SIDT~~~~v~eaAL~aGAd 230 (499)
T TIGR00284 154 VVAEIPPTVAEDGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDAL--DSPV-IADTPTLDELYEALKAGAS 230 (499)
T ss_pred EEEEEcCCcchHHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhC--CCcE-EEeCCCHHHHHHHHHcCCC
Confidence 777776554444333335555678999999998664333344566666665443 3442 3456789999999999999
Q ss_pred EEecchh
Q 015981 263 LFDSAYI 269 (397)
Q Consensus 263 ~FD~~~p 269 (397)
++-+...
T Consensus 231 iINsVs~ 237 (499)
T TIGR00284 231 GVIMPDV 237 (499)
T ss_pred EEEECCc
Confidence 9988743
No 323
>PRK05437 isopentenyl pyrophosphate isomerase; Provisional
Probab=25.83 E-value=2.5e+02 Score=28.10 Aligned_cols=72 Identities=22% Similarity=0.351 Sum_probs=43.9
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEEcCccC--------CC-chhhHHHHHHHHHcCCCCCCccccc--CCC-ChHHHHHHH
Q 015981 190 GSNIEERKRCAQEVAVRNVSGYWIGGFGL--------GE-SMEERPSLLNAVTDNLPKDWPRMIC--GLG-LPEEVLQGV 257 (397)
Q Consensus 190 g~~~~lR~~sa~~l~~~~~~G~~IgGl~~--------ge-~~~~~~~~v~~~~~~Lp~~kpr~l~--G~g-~P~~il~~v 257 (397)
+.+.+.-.++++.+ +.++..|+ +.. +. +...+.+.++++.+.+ +.|..+= |.| ++.+...+.
T Consensus 134 ~~~~~~~~~~~~~~---~adal~l~-l~~~qe~~~p~g~~~f~~~le~i~~i~~~~--~vPVivK~~g~g~s~~~a~~l~ 207 (352)
T PRK05437 134 GYGVEEAQRAVEMI---EADALQIH-LNPLQELVQPEGDRDFRGWLDNIAEIVSAL--PVPVIVKEVGFGISKETAKRLA 207 (352)
T ss_pred CCCHHHHHHHHHhc---CCCcEEEe-CccchhhcCCCCcccHHHHHHHHHHHHHhh--CCCEEEEeCCCCCcHHHHHHHH
Confidence 55566555555544 34555553 221 11 2222447778888776 5787753 443 577777788
Q ss_pred HcCCcEEecc
Q 015981 258 AAGVDLFDSA 267 (397)
Q Consensus 258 ~~GvD~FD~~ 267 (397)
+.|+|.+|.+
T Consensus 208 ~~Gvd~I~Vs 217 (352)
T PRK05437 208 DAGVKAIDVA 217 (352)
T ss_pred HcCCCEEEEC
Confidence 9999999975
No 324
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=25.82 E-value=2.4e+02 Score=31.27 Aligned_cols=18 Identities=22% Similarity=0.082 Sum_probs=13.5
Q ss_pred ChHHHHHHHHcCCcEEec
Q 015981 249 LPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 249 ~P~~il~~v~~GvD~FD~ 266 (397)
-|.++-.+-+.|||-|=.
T Consensus 674 ~~~~~~~l~~aGvD~~i~ 691 (714)
T PRK09426 674 PPQDYDFLYEAGVAAIFG 691 (714)
T ss_pred ChhhHHHHHhCCCCEEEC
Confidence 477777778899987643
No 325
>PF15469 Sec5: Exocyst complex component Sec5
Probab=25.79 E-value=2.2e+02 Score=25.30 Aligned_cols=42 Identities=19% Similarity=0.372 Sum_probs=35.6
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015981 346 LAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRR 387 (397)
Q Consensus 346 l~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~~~~ 387 (397)
+..++-.+-...++..+=..|+++|+.|.++.++..|.+.+.
T Consensus 73 l~~~l~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 73 LRNALEFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 445667788889999999999999999999999999876553
No 326
>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed
Probab=25.72 E-value=6.3e+02 Score=24.58 Aligned_cols=130 Identities=11% Similarity=0.126 Sum_probs=66.9
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCH---H-------HH
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNI---E-------ER 196 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~---~-------lR 196 (397)
+.+...+..+. |.+-+|. |.-.. + .+.-++.|.+..+.+-...-.-..=+|.|-|..+. + --
T Consensus 86 ~~e~i~~ai~~-GftSVMi--DgS~l--p---~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~p 157 (284)
T PRK12737 86 DLDDIKKKVRA-GIRSVMI--DGSHL--S---FEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNP 157 (284)
T ss_pred CHHHHHHHHHc-CCCeEEe--cCCCC--C---HHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCH
Confidence 44555555444 6666655 32211 2 34455555555554433210001145666443221 0 12
Q ss_pred HHHHHHHHhcCCceEEEc--CccCC--CchhhHHHHHHHHHcCCCCCCcccccCC-CChH-HHHHHHHcCCcEEec
Q 015981 197 KRCAQEVAVRNVSGYWIG--GFGLG--ESMEERPSLLNAVTDNLPKDWPRMICGL-GLPE-EVLQGVAAGVDLFDS 266 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~Ig--Gl~~g--e~~~~~~~~v~~~~~~Lp~~kpr~l~G~-g~P~-~il~~v~~GvD~FD~ 266 (397)
.++.+++.+.++|-+++. -.+.. ..+.-..++++.+.+.+ +.|..++|- |.|. ++..++.+||-=+-.
T Consensus 158 eeA~~Fv~~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~--~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi 231 (284)
T PRK12737 158 DAAAEFVERTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKV--SIPLVLHGASGVPDEDVKKAISLGICKVNV 231 (284)
T ss_pred HHHHHHHHHhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHCCCeEEEe
Confidence 455666667788876653 22211 12223356777777766 479889865 4554 555688898865543
No 327
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=25.63 E-value=2.4e+02 Score=24.64 Aligned_cols=65 Identities=17% Similarity=0.048 Sum_probs=40.6
Q ss_pred HHHHhcCCceEEEcCccCCC---c--hhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 201 QEVAVRNVSGYWIGGFGLGE---S--MEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 201 ~~l~~~~~~G~~IgGl~~ge---~--~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++..+.+++.+.++.+-.+. . ...-.+.++.+.+. .+.|.+..|--++.++-.+...|+|.|-..
T Consensus 109 ~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 109 LRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL--VEIPVVAIGGITPENAAEVLAAGADGVAVI 178 (196)
T ss_pred HHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh--CCCCEEEECCCCHHHHHHHHHcCCCEEEEe
Confidence 34445678888876442111 1 11113444554443 357887776558999999999999988665
No 328
>PRK14567 triosephosphate isomerase; Provisional
Probab=25.33 E-value=2.6e+02 Score=26.79 Aligned_cols=81 Identities=19% Similarity=0.271 Sum_probs=42.2
Q ss_pred cEEEEcCCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHhCCCC-CCeEEeecCCCCHHHHHHHHHHHH-hcCCceEEE
Q 015981 141 NLWATLADEV-----PAWANNKRNKTSVDRTVKWLDECIARSPAG-GAVFGSIVGGSNIEERKRCAQEVA-VRNVSGYWI 213 (397)
Q Consensus 141 Di~~~L~d~~-----~~~~~~kr~~~sverT~~w~~~~l~~~~~~-~~lf~~iqGg~~~~lR~~sa~~l~-~~~~~G~~I 213 (397)
.++++. +++ .-.++.+.+++. +++.++.+...... ..-..++-||.-. ..=++++. ..+++|+.|
T Consensus 159 ~ivIAY-EPvWAIGTG~~as~e~i~~~----~~~IR~~l~~~~~~~a~~v~IlYGGSV~---~~N~~~l~~~~diDG~LV 230 (253)
T PRK14567 159 KVVIAY-EPVWAIGTGVVASLEQIQET----HQFIRSLLAKVDERLAKNIKIVYGGSLK---AENAKDILSLPDVDGGLI 230 (253)
T ss_pred CEEEEE-CCHHHhCCCCCCCHHHHHHH----HHHHHHHHHhhcccccccceEEEcCcCC---HHHHHHHHcCCCCCEEEe
Confidence 366665 443 222455555554 45555544321111 1234566665431 12233444 456999999
Q ss_pred cCccCCCchhhHHHHHHH
Q 015981 214 GGFGLGESMEERPSLLNA 231 (397)
Q Consensus 214 gGl~~ge~~~~~~~~v~~ 231 (397)
||-++ +.+.+.++++.
T Consensus 231 GgasL--~~~~F~~Ii~~ 246 (253)
T PRK14567 231 GGASL--KAAEFNEIINQ 246 (253)
T ss_pred ehhhh--cHHHHHHHHHH
Confidence 99774 44566777754
No 329
>cd08612 GDPD_GDE4 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE4 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 1 (GDPD1)) and similar proteins. Mammalian GDE4 is a transmembrane protein whose cellular function has not yet been elucidated. It is expressed widely, including in placenta, liver, kidney, pancreas, spleen, thymus, ovary, small intestine and peripheral blood leukocytes. It is also expressed in the growth cones in neuroblastoma Neuro2a cells, which suggests GDE4 may play some distinct role from other members of the GDE family.
Probab=25.28 E-value=1.2e+02 Score=29.57 Aligned_cols=35 Identities=20% Similarity=0.054 Sum_probs=31.3
Q ss_pred CCcccccCCCChHHHHHHHHcCCcEEecchhHHhh
Q 015981 239 DWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLT 273 (397)
Q Consensus 239 ~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a 273 (397)
..+.++..+-+|.++..++++|||.+-+.+|.+..
T Consensus 261 G~~v~vWTVNd~~~~~~l~~~GVdgIiTD~P~~l~ 295 (300)
T cd08612 261 GIQVYGWVLNDEEEFERAFELGADGVMTDYPTKLR 295 (300)
T ss_pred CCEEEEeecCCHHHHHHHHhcCCCEEEeCCHHHHH
Confidence 56778889999999999999999999999998654
No 330
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=25.21 E-value=2.5e+02 Score=28.44 Aligned_cols=73 Identities=25% Similarity=0.300 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCCceEEEcCcc------------------CCCchhhH----HHHHHHHHcCCCCCCcccc-cCCCCh---
Q 015981 197 KRCAQEVAVRNVSGYWIGGFG------------------LGESMEER----PSLLNAVTDNLPKDWPRMI-CGLGLP--- 250 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~IgGl~------------------~ge~~~~~----~~~v~~~~~~Lp~~kpr~l-~G~g~P--- 250 (397)
.++|+...+-||||+-|-|-+ .|.+.|.+ .++|+++.+..+.+.|.-+ +....+
T Consensus 152 ~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~~~~ 231 (363)
T COG1902 152 ARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDFFDG 231 (363)
T ss_pred HHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCC
Q ss_pred --------HHHHHHH-HcC-CcEEecchh
Q 015981 251 --------EEVLQGV-AAG-VDLFDSAYI 269 (397)
Q Consensus 251 --------~~il~~v-~~G-vD~FD~~~p 269 (397)
.+++..+ ..| +|.++.+.+
T Consensus 232 ~g~~~~e~~~la~~L~~~G~~d~i~vs~~ 260 (363)
T COG1902 232 GGLTIEEAVELAKALEEAGLVDYIHVSEG 260 (363)
T ss_pred CCCCHHHHHHHHHHHHhcCCccEEEeecc
No 331
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=25.13 E-value=2e+02 Score=25.66 Aligned_cols=61 Identities=15% Similarity=0.020 Sum_probs=41.9
Q ss_pred HHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCccc--ccCCCChHHHHHHHHcCCcEEec
Q 015981 200 AQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRM--ICGLGLPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 200 a~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~--l~G~g~P~~il~~v~~GvD~FD~ 266 (397)
++.+.+.|.+++.+-+.... +...++++.+.+. +.+.. +++..+|.++..+...|+|..=.
T Consensus 70 ~~~~~~aGad~i~~h~~~~~---~~~~~~i~~~~~~---g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~ 132 (202)
T cd04726 70 AEMAFKAGADIVTVLGAAPL---STIKKAVKAAKKY---GKEVQVDLIGVEDPEKRAKLLKLGVDIVIL 132 (202)
T ss_pred HHHHHhcCCCEEEEEeeCCH---HHHHHHHHHHHHc---CCeEEEEEeCCCCHHHHHHHHHCCCCEEEE
Confidence 45667789999988654421 2345566666542 34444 37999999999988999996544
No 332
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.03 E-value=3.7e+02 Score=26.53 Aligned_cols=80 Identities=18% Similarity=0.131 Sum_probs=50.2
Q ss_pred cCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCch-------------hhHHHHHHHHHcCCCCCCccccc-CCCChHHH
Q 015981 188 VGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESM-------------EERPSLLNAVTDNLPKDWPRMIC-GLGLPEEV 253 (397)
Q Consensus 188 qGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~-------------~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~i 253 (397)
.||.+.+.-.+.++.+.+.+++-+-+.+-...... ....+..+.+.+.+ +.|...- ++.+|.++
T Consensus 230 ~~g~~~eea~~ia~~Le~~Gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v--~iPVi~~G~i~t~~~a 307 (338)
T cd04733 230 RGGFTEEDALEVVEALEEAGVDLVELSGGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT--KTPLMVTGGFRTRAAM 307 (338)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEecCCCCCCccccccccCCccccchhhHHHHHHHHHHc--CCCEEEeCCCCCHHHH
Confidence 47787776667788888888877766542211100 00134444455544 4676554 66689999
Q ss_pred HHHHHcC-CcEEecchh
Q 015981 254 LQGVAAG-VDLFDSAYI 269 (397)
Q Consensus 254 l~~v~~G-vD~FD~~~p 269 (397)
..+++.| +|++=..-|
T Consensus 308 ~~~l~~g~aD~V~lgR~ 324 (338)
T cd04733 308 EQALASGAVDGIGLARP 324 (338)
T ss_pred HHHHHcCCCCeeeeChH
Confidence 9999987 788766544
No 333
>PF13413 HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_A.
Probab=24.47 E-value=86 Score=23.02 Aligned_cols=43 Identities=21% Similarity=0.344 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHH-----HHHHHHHHHHHhccccc
Q 015981 351 LEIHNTHHYLGFFRSIREAIKEGCFE-----QFQKKFVQSRREHLAAD 393 (397)
Q Consensus 351 L~~HNl~~~~~~~~~iR~aI~~g~l~-----~~~~~f~~~~~~~~~~~ 393 (397)
|++..+....++=...=++|++|+|. -|+..|++++...|..|
T Consensus 11 lsl~~va~~t~I~~~~l~aiE~~~~~~lp~~~y~rg~lr~Ya~~Lgld 58 (62)
T PF13413_consen 11 LSLEDVAEETKISVSYLEAIENGDFDSLPSPVYARGYLRKYARFLGLD 58 (62)
T ss_dssp --HHHHHHHCS--HHHHHHHHCT-GCCSSSHHHHHHHHHHHHHHTT--
T ss_pred CCHHHHHHHhCCCHHHHHHHHCcChhhCCcHHHHHHHHHHHHHHhCcC
Confidence 56666777777777888999999875 58899999998887655
No 334
>PRK14566 triosephosphate isomerase; Provisional
Probab=24.44 E-value=2.7e+02 Score=26.81 Aligned_cols=65 Identities=23% Similarity=0.265 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHhCCCC-CCeEEeecCCC-CHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHH
Q 015981 163 VDRTVKWLDECIARSPAG-GAVFGSIVGGS-NIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAV 232 (397)
Q Consensus 163 verT~~w~~~~l~~~~~~-~~lf~~iqGg~-~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~ 232 (397)
++.++.++++.+...... ..-..++-||. .++ .+.+-+...+++|+.|||.++ +.+.+.++++.+
T Consensus 191 a~~v~~~IR~~l~~~~~~~a~~~rIlYGGSV~~~---N~~~l~~~~dIDG~LVGgASL--~~~~F~~Ii~~~ 257 (260)
T PRK14566 191 AQEVHAFIRKRLSEVSPFIGENIRILYGGSVTPS---NAADLFAQPDVDGGLIGGASL--NSTEFLSLCTIA 257 (260)
T ss_pred HHHHHHHHHHHHHhcCccccccceEEecCCCCHh---HHHHHhcCCCCCeEEechHhc--CHHHHHHHHHHh
Confidence 344567777666432111 12356666664 443 222334456899999999764 345667777643
No 335
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=24.41 E-value=87 Score=30.50 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=0.0
Q ss_pred HHHHHHHHcCCCCCCccc-ccCCCChHHHHHHHHcCCcEEecc
Q 015981 226 PSLLNAVTDNLPKDWPRM-ICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~-l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
.+.|+++.+.+ +.|.+ +.-.++-.++-.+++.|+|++|++
T Consensus 54 ~~~I~~Ik~~V--~iPVIGi~K~~~~~Ea~~L~eaGvDiIDaT 94 (283)
T cd04727 54 PKMIKEIMDAV--SIPVMAKVRIGHFVEAQILEALGVDMIDES 94 (283)
T ss_pred HHHHHHHHHhC--CCCeEEeeehhHHHHHHHHHHcCCCEEecc
No 336
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=24.33 E-value=3.5e+02 Score=26.67 Aligned_cols=79 Identities=20% Similarity=0.324 Sum_probs=46.5
Q ss_pred eEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccC--------CC-chhhHHHHHHHHHcCCCCCCcccc--cCCC-Ch
Q 015981 183 VFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGL--------GE-SMEERPSLLNAVTDNLPKDWPRMI--CGLG-LP 250 (397)
Q Consensus 183 lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~--------ge-~~~~~~~~v~~~~~~Lp~~kpr~l--~G~g-~P 250 (397)
++++.-.+...+.-.++++.+ +.++..|+ +.. +. +.+.+.+.|+.+.+.+ +.|..+ .|.| ++
T Consensus 119 l~~~~~~~~~~~~~~~~i~~~---~adalel~-l~~~q~~~~~~~~~df~~~~~~i~~l~~~~--~vPVivK~~g~g~s~ 192 (326)
T cd02811 119 LGAVQLNGYGVEEARRAVEMI---EADALAIH-LNPLQEAVQPEGDRDFRGWLERIEELVKAL--SVPVIVKEVGFGISR 192 (326)
T ss_pred cCccccCCCCHHHHHHHHHhc---CCCcEEEe-CcchHhhcCCCCCcCHHHHHHHHHHHHHhc--CCCEEEEecCCCCCH
Confidence 443333345666555555544 34555553 221 11 2222346777777766 467765 3554 67
Q ss_pred HHHHHHHHcCCcEEecc
Q 015981 251 EEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 251 ~~il~~v~~GvD~FD~~ 267 (397)
.+...+.+.|+|.+|.+
T Consensus 193 ~~a~~l~~~Gvd~I~vs 209 (326)
T cd02811 193 ETAKRLADAGVKAIDVA 209 (326)
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 77888889999999965
No 337
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=24.30 E-value=71 Score=29.49 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=28.3
Q ss_pred CCcccccCCCChHHHHHHHHcCCcEEecchh
Q 015981 239 DWPRMICGLGLPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 239 ~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p 269 (397)
.++.++..+-++.++-.++.+|||.+-+.+|
T Consensus 200 g~~v~~Wtvn~~~~~~~~~~~GVdgi~TD~P 230 (230)
T cd08563 200 GIPVRLWTVNEEEDMKRLKDLGVDGIITNYP 230 (230)
T ss_pred CCEEEEEecCCHHHHHHHHHCCCCEEeCCCC
Confidence 6778888999999999999999999998887
No 338
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=24.13 E-value=3.6e+02 Score=25.77 Aligned_cols=40 Identities=23% Similarity=0.258 Sum_probs=29.3
Q ss_pred HHHHHHcCCCCCCccc-ccCCCChHHHHHHHHcCCcEEecc
Q 015981 228 LLNAVTDNLPKDWPRM-ICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 228 ~v~~~~~~Lp~~kpr~-l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
......+.+|.+..+. -.|+.+|.++..+...|+|-|=.-
T Consensus 198 ~~~~l~~~ip~~~~~iseSGI~~~~d~~~l~~~G~davLVG 238 (254)
T PF00218_consen 198 RTEELAPLIPKDVIVISESGIKTPEDARRLARAGADAVLVG 238 (254)
T ss_dssp HHHHHHCHSHTTSEEEEESS-SSHHHHHHHCTTT-SEEEES
T ss_pred HHHHHHhhCccceeEEeecCCCCHHHHHHHHHCCCCEEEEC
Confidence 3345667888775554 469999999999999999987654
No 339
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=24.11 E-value=1.5e+02 Score=30.66 Aligned_cols=66 Identities=20% Similarity=0.362 Sum_probs=39.4
Q ss_pred HHHHHHhcCCceEEEcCccCC---Cc-------hhhHHHHHHHHHcCCC-CCCccccc--CCCChHHHHHHHHcCCcEEe
Q 015981 199 CAQEVAVRNVSGYWIGGFGLG---ES-------MEERPSLLNAVTDNLP-KDWPRMIC--GLGLPEEVLQGVAAGVDLFD 265 (397)
Q Consensus 199 sa~~l~~~~~~G~~IgGl~~g---e~-------~~~~~~~v~~~~~~Lp-~~kpr~l~--G~g~P~~il~~v~~GvD~FD 265 (397)
-++.+.+.|++++.+| ++.| .. ..+ ...+..+.+... .+.|. +. |+-+|.+|..|+++|+|.+=
T Consensus 278 ~a~~l~~aGad~i~vg-~g~G~~~~t~~~~~~g~p~-~~~i~~~~~~~~~~~vpv-iadGGi~~~~di~kAla~GA~~V~ 354 (450)
T TIGR01302 278 QAKALIDAGADGLRVG-IGPGSICTTRIVAGVGVPQ-ITAVYDVAEYAAQSGIPV-IADGGIRYSGDIVKALAAGADAVM 354 (450)
T ss_pred HHHHHHHhCCCEEEEC-CCCCcCCccceecCCCccH-HHHHHHHHHHHhhcCCeE-EEeCCCCCHHHHHHHHHcCCCEEE
Confidence 4556677899998774 2222 11 011 123333322221 23554 55 89999999999999999765
Q ss_pred cc
Q 015981 266 SA 267 (397)
Q Consensus 266 ~~ 267 (397)
.-
T Consensus 355 ~G 356 (450)
T TIGR01302 355 LG 356 (450)
T ss_pred EC
Confidence 54
No 340
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=24.09 E-value=2.4e+02 Score=25.86 Aligned_cols=65 Identities=12% Similarity=0.129 Sum_probs=43.2
Q ss_pred HHHHHHHhcCCceEEEcCcc-----CCCchhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcC-CcEEecch
Q 015981 198 RCAQEVAVRNVSGYWIGGFG-----LGESMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAG-VDLFDSAY 268 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~-----~ge~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~G-vD~FD~~~ 268 (397)
+.++.+.+.+++.+.+-+.. .|.+ .++++.+.+..+ .|.+.- |+.++.++..+.+.| +|-+=...
T Consensus 150 e~~~~~~~~g~~~ii~~~~~~~g~~~G~d----~~~i~~l~~~~~--ipvia~GGi~~~~di~~~~~~g~~~gv~vg~ 221 (233)
T PRK00748 150 DLAKRFEDAGVKAIIYTDISRDGTLSGPN----VEATRELAAAVP--IPVIASGGVSSLDDIKALKGLGAVEGVIVGR 221 (233)
T ss_pred HHHHHHHhcCCCEEEEeeecCcCCcCCCC----HHHHHHHHHhCC--CCEEEeCCCCCHHHHHHHHHcCCccEEEEEH
Confidence 34566667777766665443 2222 455666666554 676654 799999999999998 99776553
No 341
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=24.06 E-value=88 Score=30.60 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=28.6
Q ss_pred HHHHHHcCCCCCCccc-ccCCCChHHHHHHHHcCCcEEecch
Q 015981 228 LLNAVTDNLPKDWPRM-ICGLGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 228 ~v~~~~~~Lp~~kpr~-l~G~g~P~~il~~v~~GvD~FD~~~ 268 (397)
.|.++.+.. +.|.. +.-+|+-.+.-.+.++|+|++|++-
T Consensus 65 ~I~aIk~~V--~iPVigk~Righ~~Ea~~L~~~GvDiID~Te 104 (293)
T PRK04180 65 MIEEIMDAV--SIPVMAKARIGHFVEAQILEALGVDYIDESE 104 (293)
T ss_pred HHHHHHHhC--CCCeEEeehhhHHHHHHHHHHcCCCEEeccC
Confidence 344554544 56654 4567889999999999999999874
No 342
>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases. TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.
Probab=24.04 E-value=6.7e+02 Score=24.30 Aligned_cols=131 Identities=15% Similarity=0.100 Sum_probs=70.0
Q ss_pred ChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHH------H--HHH
Q 015981 127 KPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIE------E--RKR 198 (397)
Q Consensus 127 tpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~------l--R~~ 198 (397)
+++..++.. ..|.+-+|. |.-.. + .+.-+++|.+..+.+-...-.-..=+|.|-|..+.. + -.+
T Consensus 81 ~~~~i~~ai-~~GftSVMi--D~S~l--~---~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~ 152 (276)
T cd00947 81 SFELIKRAI-RAGFSSVMI--DGSHL--P---FEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEE 152 (276)
T ss_pred CHHHHHHHH-HhCCCEEEe--CCCCC--C---HHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHH
Confidence 567766665 457777776 32111 1 344455555554444322100011355554433220 0 234
Q ss_pred HHHHHHhcCCceEEE--cCccCC--C-chhhHHHHHHHHHcCCCCCCcccccCC-CCh-HHHHHHHHcCCcEEecc
Q 015981 199 CAQEVAVRNVSGYWI--GGFGLG--E-SMEERPSLLNAVTDNLPKDWPRMICGL-GLP-EEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 199 sa~~l~~~~~~G~~I--gGl~~g--e-~~~~~~~~v~~~~~~Lp~~kpr~l~G~-g~P-~~il~~v~~GvD~FD~~ 267 (397)
+.+++.+.++|-+++ |-.+.. . .+.-..++++.+.+.+ +.|..++|- |.| +++-.++..||-=+-..
T Consensus 153 a~~Fv~~TgvD~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~--~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~ 226 (276)
T cd00947 153 AEEFVEETGVDALAVAIGTSHGAYKGGEPKLDFDRLKEIAERV--NVPLVLHGGSGIPDEQIRKAIKLGVCKININ 226 (276)
T ss_pred HHHHHHHHCCCEEEeccCccccccCCCCCccCHHHHHHHHHHh--CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeC
Confidence 555555678887664 333211 1 2333467777777776 589989965 556 55888899998655433
No 343
>PRK07695 transcriptional regulator TenI; Provisional
Probab=23.69 E-value=2.5e+02 Score=25.32 Aligned_cols=39 Identities=26% Similarity=0.255 Sum_probs=28.8
Q ss_pred HHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 227 SLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 227 ~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
+.++.+...+ +.|.+..|=-+|.++..+...|+|.+-..
T Consensus 139 ~~l~~~~~~~--~ipvia~GGI~~~~~~~~~~~Ga~gvav~ 177 (201)
T PRK07695 139 EELSDIARAL--SIPVIAIGGITPENTRDVLAAGVSGIAVM 177 (201)
T ss_pred HHHHHHHHhC--CCCEEEEcCCCHHHHHHHHHcCCCEEEEE
Confidence 4555555544 47888775449999999999999988544
No 344
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=23.65 E-value=1e+03 Score=26.35 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=32.4
Q ss_pred cC-CCc--eecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHH
Q 015981 119 TP-CGR--RLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKT 161 (397)
Q Consensus 119 s~-~G~--~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~ 161 (397)
|| .|. ..++|.++.+..+..|++.+-+|.|+.-..-+.+.++.
T Consensus 60 SPs~G~i~~~~d~~~~a~~y~~~GA~aiSVlTe~~~F~Gs~~~l~~ 105 (695)
T PRK13802 60 SPSKGHLSDIPDPAALAREYEQGGASAISVLTEGRRFLGSLDDFDK 105 (695)
T ss_pred CCCCCcCCCCCCHHHHHHHHHHcCCcEEEEecCcCcCCCCHHHHHH
Confidence 44 463 46799999999999999999999887755555544443
No 345
>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype. Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.
Probab=23.64 E-value=1.9e+02 Score=29.10 Aligned_cols=68 Identities=21% Similarity=0.259 Sum_probs=41.9
Q ss_pred HHHHHHHHhcCCceEEE--cCccC---CC-chh---hHHHHHHHHHcCCCCCCcccccCCC-Ch----------------
Q 015981 197 KRCAQEVAVRNVSGYWI--GGFGL---GE-SME---ERPSLLNAVTDNLPKDWPRMICGLG-LP---------------- 250 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~I--gGl~~---ge-~~~---~~~~~v~~~~~~Lp~~kpr~l~G~g-~P---------------- 250 (397)
.++.+++.+.+++-+++ |-.+. ++ .+. -..+.++.+.+.+| +.|..|+|.. .|
T Consensus 174 eeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld~~rL~eI~~~v~-~vPLVLHGgSG~p~~~~~~~~~~~~~~~~ 252 (347)
T TIGR01521 174 EEAADFVKKTKVDALAVAIGTSHGAYKFTRKPTGEVLAIQRIEEIHARLP-DTHLVMHGSSSVPQEWLDIINEYGGEIKE 252 (347)
T ss_pred HHHHHHHHHHCcCEEehhcccccCCcCCCCCCChhhcCHHHHHHHHccCC-CCCEEEeCCCCCchHhhHHHHhhcccccc
Confidence 45566666678887665 33321 11 111 23667888888884 5899899765 55
Q ss_pred ------HHHHHHHHcCCcEEe
Q 015981 251 ------EEVLQGVAAGVDLFD 265 (397)
Q Consensus 251 ------~~il~~v~~GvD~FD 265 (397)
.+|..||.+||-=+-
T Consensus 253 ~~g~p~e~i~~ai~~GI~KVN 273 (347)
T TIGR01521 253 TYGVPVEEIVEGIKYGVRKVN 273 (347)
T ss_pred cCCCCHHHHHHHHHCCCeeEE
Confidence 567777777776444
No 346
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=23.56 E-value=1.1e+02 Score=31.23 Aligned_cols=40 Identities=28% Similarity=0.214 Sum_probs=33.7
Q ss_pred HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 226 PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++-|+++.+.. +-|..+-|+-++.+...+++.|+|.++.+
T Consensus 234 W~di~~lr~~~--~~pvivKgV~s~~dA~~a~~~Gvd~I~Vs 273 (381)
T PRK11197 234 WKDLEWIRDFW--DGPMVIKGILDPEDARDAVRFGADGIVVS 273 (381)
T ss_pred HHHHHHHHHhC--CCCEEEEecCCHHHHHHHHhCCCCEEEEC
Confidence 35567777765 46888999999999999999999999966
No 347
>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]
Probab=23.54 E-value=1.8e+02 Score=29.07 Aligned_cols=64 Identities=16% Similarity=0.157 Sum_probs=43.8
Q ss_pred HHhcCCceEEEcCccC-CC-----chhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecc
Q 015981 203 VAVRNVSGYWIGGFGL-GE-----SMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~-ge-----~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~ 267 (397)
..+.|.++++..|... |. .......++..+.+.... -|...- |++++..|+.+..+|.|..-+-
T Consensus 143 ~~~~G~d~vI~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~-iPViAAGGI~dg~~i~AAlalGA~gVq~G 213 (336)
T COG2070 143 AERAGADAVIAQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG-IPVIAAGGIADGRGIAAALALGADGVQMG 213 (336)
T ss_pred HHhCCCCEEEecCCcCCCcCCCCCCCccHHHHHHHHHHHhcC-CCEEEecCccChHHHHHHHHhccHHHHhh
Confidence 3456777777776632 22 122346777777777643 576665 8999999999999999865544
No 348
>COG4049 Uncharacterized protein containing archaeal-type C2H2 Zn-finger [General function prediction only]
Probab=23.39 E-value=41 Score=24.48 Aligned_cols=20 Identities=35% Similarity=0.732 Sum_probs=15.8
Q ss_pred CCcccc---cccHHHHHHHhhcC
Q 015981 324 CCYTCQ---NHTKAYINHLLNVH 343 (397)
Q Consensus 324 ~C~tC~---~~traYlhHLl~~~ 343 (397)
-||-|- ++.+.|++|.-++|
T Consensus 19 rCPRC~~~FR~~K~Y~RHVNKaH 41 (65)
T COG4049 19 RCPRCGMVFRRRKDYIRHVNKAH 41 (65)
T ss_pred eCCchhHHHHHhHHHHHHhhHHh
Confidence 477786 68999999987655
No 349
>cd08811 CARD_IPS1 Caspase activation and recruitment domain (CARD) found in IPS-1. Caspase activation and recruitment domain (CARD) found in IPS-1 (Interferon beta promoter stimulator protein 1), also known as CARDIF, VISA or MAVS. IPS-1 is an adaptor protein that plays an important role in interferon induction in response to viral infection. It is crucial in triggering innate immunity and in developing adaptive immunity against viral pathogens. The CARD of IPS-1 associates with the CARDs of two RNA helicases, RIG-I and MDA5, which bind viral DNA in the cytoplasm during the initial stage of intracellular antiviral response, leading to the induction of type I interferons. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homo
Probab=23.30 E-value=80 Score=24.97 Aligned_cols=41 Identities=17% Similarity=0.237 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccc
Q 015981 352 EIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRREHLAADV 394 (397)
Q Consensus 352 ~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~~~~~~~~~~~ 394 (397)
..+|...+..++..+|. +.|.+++|+...-+.-..+||.+|
T Consensus 44 ~~Gn~~a~~~L~d~Lrr--R~~W~~~fi~ALr~~~~~~lAee~ 84 (84)
T cd08811 44 HSGNRATVQKLFDHLRR--RPNWVECLIRALRRCELGSLAEEV 84 (84)
T ss_pred hhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHcCCcchhhcC
Confidence 55899999999999986 689999998865555456777654
No 350
>PRK09454 ugpQ cytoplasmic glycerophosphodiester phosphodiesterase; Provisional
Probab=23.09 E-value=84 Score=29.55 Aligned_cols=35 Identities=14% Similarity=0.105 Sum_probs=31.5
Q ss_pred CCcccccCCCChHHHHHHHHcCCcEEecchhHHhh
Q 015981 239 DWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLT 273 (397)
Q Consensus 239 ~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a 273 (397)
.++.++.++.+|.++-.++.+|||.+-+.+|...+
T Consensus 209 g~~v~~WTvn~~~~~~~l~~~GVdgIiTD~p~~~~ 243 (249)
T PRK09454 209 GLRILVYTVNDPARARELLRWGVDCICTDRIDLIG 243 (249)
T ss_pred CCEEEEEeCCCHHHHHHHHHcCCCEEEeCChHhcC
Confidence 56778889999999999999999999999998654
No 351
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=23.03 E-value=6.5e+02 Score=23.85 Aligned_cols=143 Identities=19% Similarity=0.147 Sum_probs=74.7
Q ss_pred ceEEEcCCCceecChhhHHHHHHhcCCcEE-EEcCCCCCCCCCHHHHH--HHHHHHHHHHHHHHHhCCCC--CCeEEeec
Q 015981 114 GASFETPCGRRLIKPVEYMEMITSMKPNLW-ATLADEVPAWANNKRNK--TSVDRTVKWLDECIARSPAG--GAVFGSIV 188 (397)
Q Consensus 114 gv~~~s~~G~~~ltpe~~~~~q~~i~pDi~-~~L~d~~~~~~~~kr~~--~sverT~~w~~~~l~~~~~~--~~lf~~iq 188 (397)
|+.+....| .+| ++.++..+..|.|.+ +.+ | .. ....+++. .+.+...+.++.+.+..-.- ..++|.
T Consensus 111 ~i~~~~~~g--~~~-~e~l~~Lk~aG~~~v~i~~-E-~~-~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl-- 182 (296)
T TIGR00433 111 GLKTCATLG--LLD-PEQAKRLKDAGLDYYNHNL-D-TS-QEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGL-- 182 (296)
T ss_pred CCeEEecCC--CCC-HHHHHHHHHcCCCEEEEcc-c-CC-HHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeC--
Confidence 555544445 345 556677778899987 444 3 21 11112211 23333333344333321100 113442
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEcCcc------C----CCchhhHHHHHHHHHcCCCCCCcccccCCC-ChHHH-HH-
Q 015981 189 GGSNIEERKRCAQEVAVRNVSGYWIGGFG------L----GESMEERPSLLNAVTDNLPKDWPRMICGLG-LPEEV-LQ- 255 (397)
Q Consensus 189 Gg~~~~lR~~sa~~l~~~~~~G~~IgGl~------~----ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g-~P~~i-l~- 255 (397)
|...+-+.+.++.+.+.+++.+.+.-+. . ..+.++..+++..+...+|....|+.-|-. .-.+. ..
T Consensus 183 -~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~ 261 (296)
T TIGR00433 183 -GETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAM 261 (296)
T ss_pred -CCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHH
Confidence 3345566678888888887766443222 1 123356678888888889976665543332 11222 23
Q ss_pred HHHcCCcEEe
Q 015981 256 GVAAGVDLFD 265 (397)
Q Consensus 256 ~v~~GvD~FD 265 (397)
++..|+|-+-
T Consensus 262 ~l~~G~n~i~ 271 (296)
T TIGR00433 262 CFMAGANSIF 271 (296)
T ss_pred HHHhcCceEE
Confidence 7889998544
No 352
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=22.99 E-value=4.2e+02 Score=23.74 Aligned_cols=30 Identities=13% Similarity=0.069 Sum_probs=24.9
Q ss_pred CCcccccCCCChHHHHHHHHcCCcEEecch
Q 015981 239 DWPRMICGLGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 239 ~kpr~l~G~g~P~~il~~v~~GvD~FD~~~ 268 (397)
+.+..+-||.++.+...+-.+|||.|-..|
T Consensus 202 ~~~via~gVe~~~~~~~~~~~gi~~~QG~~ 231 (240)
T cd01948 202 GLKVVAEGVETEEQLELLRELGCDYVQGYL 231 (240)
T ss_pred CCeEEEEecCCHHHHHHHHHcCCCeeeece
Confidence 345567799999999999999999986543
No 353
>COG2766 PrkA Putative Ser protein kinase [Signal transduction mechanisms]
Probab=22.77 E-value=4e+02 Score=28.75 Aligned_cols=126 Identities=18% Similarity=0.116 Sum_probs=72.6
Q ss_pred ccccCCCChHHHHHHH-HcCCcEEecc----hhHHhhhcceeecccCCccccccccccccCCCCCcceeeecC-cccccC
Q 015981 242 RMICGLGLPEEVLQGV-AAGVDLFDSA----YIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRA-TVYRKD 315 (397)
Q Consensus 242 r~l~G~g~P~~il~~v-~~GvD~FD~~----~p~~~a~~G~al~f~~~~~~~~~~~~~~~~~~~~~~~i~l~~-~~~~~D 315 (397)
|++-|.-+|+..-++- +.|-|+++-. +|...-+.|++-+-|-++. |+ ..+. -.|.++++. ..|..
T Consensus 170 ~~~~~~lsP~~~~rL~~E~~gdi~~~~Vv~~~~S~~r~~gIg~~eP~D~~--nQ---D~s~---L~G~Vdi~kL~~yge- 240 (649)
T COG2766 170 RRLEGDLSPWARKRLDHEYGGDIEKFAVVKLNPSILRRIGIGKTEPGDEN--NQ---DISA---LTGKVDISKLEHYGE- 240 (649)
T ss_pred hhccCCCCHHHHHHHHHHhCCccceeEEEEeecchhccceeeecCCCCCC--Cc---chhH---hhccccHHHHhhccc-
Confidence 5688999999999998 8999998865 7788888888876432221 11 1111 134555543 12221
Q ss_pred CCCCCCCCCCcccc------------cccHHHHHHHhhcChh------------hHhHHHHHHHHHHHHHHHHHHHHHHH
Q 015981 316 ATPIVEDCCCYTCQ------------NHTKAYINHLLNVHEM------------LAQILLEIHNTHHYLGFFRSIREAIK 371 (397)
Q Consensus 316 ~~pl~~~C~C~tC~------------~~traYlhHLl~~~Em------------l~~~LL~~HNl~~~~~~~~~iR~aI~ 371 (397)
..|-...-+---|+ +-...+|||||++-.- ....|+..||. ..+-+.-+.
T Consensus 241 ~DP~Aysy~Gal~~aNrGl~ef~Em~K~~~k~L~~lLtaTQEg~~k~~~~~~~i~~d~lIvahsN------esE~q~fk~ 314 (649)
T COG2766 241 SDPRAYSYSGALCRANRGLMEFVEMFKAPIKVLHPLLTATQEGNYKGTEGIGAIPFDGLIVAHSN------ESEWQTFKN 314 (649)
T ss_pred CCchhhcccchhhcccchHHHHHHHHhCcHHHHHHHhcccccCccCCCCCcCccccCceEEeecC------cHHHHHhhc
Confidence 11222222222233 3578999999875321 11235666664 344555566
Q ss_pred cCCHHHHHHHH
Q 015981 372 EGCFEQFQKKF 382 (397)
Q Consensus 372 ~g~l~~~~~~f 382 (397)
+.+.+.|.++.
T Consensus 315 n~~nEAf~dRi 325 (649)
T COG2766 315 NKNNEAFLDRI 325 (649)
T ss_pred CCchHHHHhhe
Confidence 66777776654
No 354
>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain. LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=22.73 E-value=1.1e+02 Score=30.76 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=33.3
Q ss_pred HHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 226 PSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
++.|+++.+.. +.|..+-|+.+|.+...+++.|+|.++.+
T Consensus 210 ~~~l~~lr~~~--~~PvivKgv~~~~dA~~a~~~G~d~I~vs 249 (351)
T cd04737 210 PADIEFIAKIS--GLPVIVKGIQSPEDADVAINAGADGIWVS 249 (351)
T ss_pred HHHHHHHHHHh--CCcEEEecCCCHHHHHHHHHcCCCEEEEe
Confidence 45666777665 47888889999999999999999999875
No 355
>PRK06806 fructose-bisphosphate aldolase; Provisional
Probab=22.69 E-value=2.8e+02 Score=26.93 Aligned_cols=64 Identities=17% Similarity=0.163 Sum_probs=43.4
Q ss_pred HHhcCCceEEE--cCccCCC--chhhHHHHHHHHHcCCCCCCcccccC--CCChHHHHHHHHcCCcEEecch
Q 015981 203 VAVRNVSGYWI--GGFGLGE--SMEERPSLLNAVTDNLPKDWPRMICG--LGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 203 l~~~~~~G~~I--gGl~~ge--~~~~~~~~v~~~~~~Lp~~kpr~l~G--~g~P~~il~~v~~GvD~FD~~~ 268 (397)
..+.++|.+++ |-..... .+.--.+.++.+.+.+ +.|..++| =-+++++..++..|++-+-..-
T Consensus 162 ~~~tg~DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~--~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T 231 (281)
T PRK06806 162 AEETDVDALAVAIGNAHGMYNGDPNLRFDRLQEINDVV--HIPLVLHGGSGISPEDFKKCIQHGIRKINVAT 231 (281)
T ss_pred HHhhCCCEEEEccCCCCCCCCCCCccCHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHcCCcEEEEhH
Confidence 33457887777 6554211 1112256777777776 48988888 4489999999999999887663
No 356
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.67 E-value=2.9e+02 Score=29.06 Aligned_cols=65 Identities=22% Similarity=0.154 Sum_probs=48.3
Q ss_pred HHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEe
Q 015981 198 RCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFD 265 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD 265 (397)
+-++.+.+.+++-++|.--+ |.+ ....++|+++.+..| +.+.+.=.+++++....++.+|+|.+=
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~-~~~-~~~~~~i~~ik~~~p-~~~v~agnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAH-GHQ-EKMLEALRAVRALDP-GVPIVAGNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred HHHHHHHHhCCCEEEEeccC-Ccc-HHHHHHHHHHHHHCC-CCeEEeeccCCHHHHHHHHHcCCCEEE
Confidence 34566677788888887433 443 445788888888887 355433379999999999999999996
No 357
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=22.62 E-value=3.6e+02 Score=27.06 Aligned_cols=71 Identities=14% Similarity=0.061 Sum_probs=39.5
Q ss_pred HHHHHHhcCCceEEEcCcc------------------CCCchhhH----HHHHHHHHcCCCCCCc--cc--------ccC
Q 015981 199 CAQEVAVRNVSGYWIGGFG------------------LGESMEER----PSLLNAVTDNLPKDWP--RM--------ICG 246 (397)
Q Consensus 199 sa~~l~~~~~~G~~IgGl~------------------~ge~~~~~----~~~v~~~~~~Lp~~kp--r~--------l~G 246 (397)
+|+...+-||||+-|-|-+ .|-+.+.+ .++|+++.+.++.+.. |+ .-|
T Consensus 164 AA~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~ 243 (362)
T PRK10605 164 AIANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDN 243 (362)
T ss_pred HHHHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCC
Confidence 4555556788887775543 13344544 5667777777765521 11 111
Q ss_pred CCChHH----HH-HHHHcCCcEEecchh
Q 015981 247 LGLPEE----VL-QGVAAGVDLFDSAYI 269 (397)
Q Consensus 247 ~g~P~~----il-~~v~~GvD~FD~~~p 269 (397)
--++.+ ++ .+.+.|||.++.+.+
T Consensus 244 G~~~~e~~~~~~~~L~~~giD~i~vs~~ 271 (362)
T PRK10605 244 GPNEEADALYLIEQLGKRGIAYLHMSEP 271 (362)
T ss_pred CCCHHHHHHHHHHHHHHcCCCEEEeccc
Confidence 124444 22 233579999998864
No 358
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=22.52 E-value=3.6e+02 Score=27.26 Aligned_cols=70 Identities=23% Similarity=0.220 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCceEEEcCcc-C------------------CCchhhH----HHHHHHHHcCCCCCCcccc----------
Q 015981 198 RCAQEVAVRNVSGYWIGGFG-L------------------GESMEER----PSLLNAVTDNLPKDWPRMI---------- 244 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~-~------------------ge~~~~~----~~~v~~~~~~Lp~~kpr~l---------- 244 (397)
++|+...+.||||+-|-+-+ . |.+.+.+ .++|+++.+.++.+-|.-+
T Consensus 154 ~AA~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~ 233 (382)
T cd02931 154 ESAVIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKD 233 (382)
T ss_pred HHHHHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhccc
Q ss_pred ------------cCCCChHHHHHHHH----cCCcEEecc
Q 015981 245 ------------CGLGLPEEVLQGVA----AGVDLFDSA 267 (397)
Q Consensus 245 ------------~G~g~P~~il~~v~----~GvD~FD~~ 267 (397)
.|--++++.+..+. .|+|.++.+
T Consensus 234 ~~~~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs 272 (382)
T cd02931 234 LRQGALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVD 272 (382)
T ss_pred cccccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeC
No 359
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=22.49 E-value=1.6e+02 Score=27.10 Aligned_cols=75 Identities=17% Similarity=0.266 Sum_probs=50.2
Q ss_pred eEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCC---hHHHHHHHHc
Q 015981 183 VFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGL---PEEVLQGVAA 259 (397)
Q Consensus 183 lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~---P~~il~~v~~ 259 (397)
+++++.+-...+. ...++.+.+.|+.-+-|-= +.+...++++.+.+..| ..+.|+|+ +++.-.++++
T Consensus 10 iiaVir~~~~~~a-~~~~~al~~gGi~~iEiT~-----~t~~a~~~I~~l~~~~p----~~~vGAGTV~~~e~a~~a~~a 79 (196)
T PF01081_consen 10 IIAVIRGDDPEDA-VPIAEALIEGGIRAIEITL-----RTPNALEAIEALRKEFP----DLLVGAGTVLTAEQAEAAIAA 79 (196)
T ss_dssp EEEEETTSSGGGH-HHHHHHHHHTT--EEEEET-----TSTTHHHHHHHHHHHHT----TSEEEEES--SHHHHHHHHHH
T ss_pred EEEEEEcCCHHHH-HHHHHHHHHCCCCEEEEec-----CCccHHHHHHHHHHHCC----CCeeEEEeccCHHHHHHHHHc
Confidence 8899987554444 5567778777777665531 11234566666666554 46789885 8888999999
Q ss_pred CCcEEecc
Q 015981 260 GVDLFDSA 267 (397)
Q Consensus 260 GvD~FD~~ 267 (397)
|.+.+-|+
T Consensus 80 GA~FivSP 87 (196)
T PF01081_consen 80 GAQFIVSP 87 (196)
T ss_dssp T-SEEEES
T ss_pred CCCEEECC
Confidence 99998887
No 360
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=22.40 E-value=61 Score=30.18 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=21.2
Q ss_pred cccCCCChHHHHHHHHcCCcEEe
Q 015981 243 MICGLGLPEEVLQGVAAGVDLFD 265 (397)
Q Consensus 243 ~l~G~g~P~~il~~v~~GvD~FD 265 (397)
+++|+.+|.++..+.++|.+.+-
T Consensus 109 ~~PG~~TptEi~~Ale~G~~~lK 131 (211)
T COG0800 109 YIPGVATPTEIMAALELGASALK 131 (211)
T ss_pred ccCCCCCHHHHHHHHHcChhhee
Confidence 58899999999999999999775
No 361
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=22.36 E-value=3.8e+02 Score=26.63 Aligned_cols=78 Identities=17% Similarity=0.146 Sum_probs=50.2
Q ss_pred CCCHHHHHHHHHHHHhcCCceEEE-cCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcC-CcEEecc
Q 015981 190 GSNIEERKRCAQEVAVRNVSGYWI-GGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAG-VDLFDSA 267 (397)
Q Consensus 190 g~~~~lR~~sa~~l~~~~~~G~~I-gGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~G-vD~FD~~ 267 (397)
|...+.-.+.++.+.+.+++.+-+ .|...........+.++.+.+.+ +.|....|--+|.++..+++.| +|++-..
T Consensus 237 ~~~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~~~~~~~~~~~~ik~~~--~ipvi~~G~i~~~~a~~~l~~g~~D~V~~g 314 (338)
T cd02933 237 SDPEATFSYLAKELNKRGLAYLHLVEPRVAGNPEDQPPDFLDFLRKAF--KGPLIAAGGYDAESAEAALADGKADLVAFG 314 (338)
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCcccccchHHHHHHHHHc--CCCEEEECCCCHHHHHHHHHcCCCCEEEeC
Confidence 345555556778888888888888 33221111122345555566665 4687766555699999999987 9988776
Q ss_pred hh
Q 015981 268 YI 269 (397)
Q Consensus 268 ~p 269 (397)
-|
T Consensus 315 R~ 316 (338)
T cd02933 315 RP 316 (338)
T ss_pred Hh
Confidence 55
No 362
>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional
Probab=22.25 E-value=1.8e+02 Score=29.32 Aligned_cols=70 Identities=19% Similarity=0.224 Sum_probs=43.4
Q ss_pred HHHHHHHHHhcCCceEEE--cCccC---CC-chh---hHHHHHHHHHcCCCCCCcccccCCC-Ch---------------
Q 015981 196 RKRCAQEVAVRNVSGYWI--GGFGL---GE-SME---ERPSLLNAVTDNLPKDWPRMICGLG-LP--------------- 250 (397)
Q Consensus 196 R~~sa~~l~~~~~~G~~I--gGl~~---ge-~~~---~~~~~v~~~~~~Lp~~kpr~l~G~g-~P--------------- 250 (397)
-.++.+++.+.+++-++| |-.+. ++ .+. -..+.++.+.+.+| +.|..|+|.. .|
T Consensus 175 PeeA~~Fv~~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~-~vPLVLHGgSGvp~~~~~~~~~~g~~~~ 253 (347)
T PRK13399 175 PDQAVDFVQRTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP-NTHLVMHGSSSVPQELQEIINAYGGKMK 253 (347)
T ss_pred HHHHHHHHHHHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC-CCCEEEeCCCCCCHHHHHHHHHhcCCcc
Confidence 345666776778887665 33321 11 111 23667888888874 5898899765 56
Q ss_pred -------HHHHHHHHcCCcEEec
Q 015981 251 -------EEVLQGVAAGVDLFDS 266 (397)
Q Consensus 251 -------~~il~~v~~GvD~FD~ 266 (397)
++|-.||.+||-=|--
T Consensus 254 ~~~g~~~e~~~kai~~GI~KINi 276 (347)
T PRK13399 254 ETYGVPVEEIQRGIKHGVRKVNI 276 (347)
T ss_pred ccCCCCHHHHHHHHHCCCeEEEe
Confidence 6677777777765443
No 363
>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family. DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.
Probab=22.19 E-value=5.9e+02 Score=23.02 Aligned_cols=94 Identities=16% Similarity=0.153 Sum_probs=55.6
Q ss_pred HHHHHHHHHHhCCCCCCeEEeec-CCCCHHHHHHHHHHHHhcCCceEEEc-Ccc-CCCchhhHHHHHHHHHcCCCCCCcc
Q 015981 166 TVKWLDECIARSPAGGAVFGSIV-GGSNIEERKRCAQEVAVRNVSGYWIG-GFG-LGESMEERPSLLNAVTDNLPKDWPR 242 (397)
Q Consensus 166 T~~w~~~~l~~~~~~~~lf~~iq-Gg~~~~lR~~sa~~l~~~~~~G~~Ig-Gl~-~ge~~~~~~~~v~~~~~~Lp~~kpr 242 (397)
..+++.++.+... .-.+-.++. |....++..++++-..+.|.+.+-.+ |+. .|.+++. .+++..+.. ...|.
T Consensus 103 ~~~ei~~v~~~~~-g~~lkvI~e~~~l~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~-v~~~~~~~~---~~v~i 177 (203)
T cd00959 103 VYEEIAAVVEACG-GAPLKVILETGLLTDEEIIKACEIAIEAGADFIKTSTGFGPGGATVED-VKLMKEAVG---GRVGV 177 (203)
T ss_pred HHHHHHHHHHhcC-CCeEEEEEecCCCCHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHH-HHHHHHHhC---CCceE
Confidence 3445555555432 122334554 44556788888887778888766653 333 3334332 233333333 23455
Q ss_pred ccc-CCCChHHHHHHHHcCCcEE
Q 015981 243 MIC-GLGLPEEVLQGVAAGVDLF 264 (397)
Q Consensus 243 ~l~-G~g~P~~il~~v~~GvD~F 264 (397)
.+. |+-+..+.+..+.+|+|.|
T Consensus 178 k~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 178 KAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred EEeCCCCCHHHHHHHHHhChhhc
Confidence 555 5779999999999999876
No 364
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=21.97 E-value=3.2e+02 Score=26.81 Aligned_cols=21 Identities=29% Similarity=0.267 Sum_probs=13.0
Q ss_pred CCCChHHHHHHHH-cCCc-EEec
Q 015981 246 GLGLPEEVLQGVA-AGVD-LFDS 266 (397)
Q Consensus 246 G~g~P~~il~~v~-~GvD-~FD~ 266 (397)
|.+++.+++..++ .|+= .||.
T Consensus 190 ~~~t~~ell~I~e~~~ipv~~D~ 212 (303)
T PRK02308 190 KTYTVEELLYICEKLGIPVVFDY 212 (303)
T ss_pred CCCCHHHHHHHHHHcCCCEEEeH
Confidence 4588888887554 3443 5663
No 365
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2. The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.
Probab=21.96 E-value=7.7e+02 Score=24.41 Aligned_cols=73 Identities=19% Similarity=0.180 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHhcCCceEEE-------cCccCCCchhhHHHHHHHHHcCCC-----CCCcccc-c--CCC--ChHHHHH
Q 015981 193 IEERKRCAQEVAVRNVSGYWI-------GGFGLGESMEERPSLLNAVTDNLP-----KDWPRMI-C--GLG--LPEEVLQ 255 (397)
Q Consensus 193 ~~lR~~sa~~l~~~~~~G~~I-------gGl~~ge~~~~~~~~v~~~~~~Lp-----~~kpr~l-~--G~g--~P~~il~ 255 (397)
.+--.++++.+.+ ..+++-| .|+..+.+.+...++++++.+.+. ..+|.++ + .+. .+.++..
T Consensus 153 ~~dy~~~~~~~~~-~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKLsP~~~~~~i~~ia~ 231 (335)
T TIGR01036 153 KEDYAACLRKLGP-LADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKIAPDLTESDLEDIAD 231 (335)
T ss_pred HHHHHHHHHHHhh-hCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHH
Confidence 3444455665553 2455544 233334455666777777655432 1267653 2 233 3677777
Q ss_pred -HHHcCCcEEec
Q 015981 256 -GVAAGVDLFDS 266 (397)
Q Consensus 256 -~v~~GvD~FD~ 266 (397)
+.+.|+|-+-.
T Consensus 232 ~~~~~GadGi~l 243 (335)
T TIGR01036 232 SLVELGIDGVIA 243 (335)
T ss_pred HHHHhCCcEEEE
Confidence 56788886643
No 366
>PRK15492 triosephosphate isomerase; Provisional
Probab=21.91 E-value=6e+02 Score=24.37 Aligned_cols=72 Identities=15% Similarity=0.215 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCC-CCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHH
Q 015981 154 ANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGG-SNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAV 232 (397)
Q Consensus 154 ~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg-~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~ 232 (397)
++.+.++...+.-.+|+.+.... ...-..++.|| ..++ .+.+-+...++||+.|||.++ +.+.+.++++..
T Consensus 186 as~e~~~~~~~~Ir~~l~~~~~~---~~~~irILYGGSV~~~---N~~~l~~~~diDG~LvG~aSl--~~~~F~~Ii~~~ 257 (260)
T PRK15492 186 ASADYADEKHAVIKQCLIELFGD---AGDDIPVFYGGSVNAE---NANELFGQPHIDGLFIGRSAW--DADKFFAIIEGI 257 (260)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcc---ccCceeEEEcCccCHH---HHHHHhcCCCCCEEEeehhhc--CHHHHHHHHHHH
Confidence 34455554433333344332221 11234666665 4443 223333556899999999764 456677777755
Q ss_pred H
Q 015981 233 T 233 (397)
Q Consensus 233 ~ 233 (397)
+
T Consensus 258 ~ 258 (260)
T PRK15492 258 L 258 (260)
T ss_pred h
Confidence 4
No 367
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=21.74 E-value=2.4e+02 Score=27.91 Aligned_cols=75 Identities=11% Similarity=0.092 Sum_probs=46.3
Q ss_pred eEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCch--hhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHH-
Q 015981 183 VFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESM--EERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVA- 258 (397)
Q Consensus 183 lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~--~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~- 258 (397)
++||.+|..+.-.|..|.+ .+..++...-+..-... .... ..+..-|.++|..+. +-.+|+++..++.
T Consensus 14 ~lAPM~g~td~~fR~~~~~----~g~~~~~~temv~~~~l~~~~~~----~~l~~~~~e~p~~vQl~g~~p~~~~~aA~~ 85 (333)
T PRK11815 14 SVAPMMDWTDRHCRYFHRL----LSRHALLYTEMVTTGAIIHGDRE----RLLAFDPEEHPVALQLGGSDPADLAEAAKL 85 (333)
T ss_pred EEeCCCCCcCHHHHHHHHH----hCCCCEEEECCEEeccccccCHH----HHhccCCCCCcEEEEEeCCCHHHHHHHHHH
Confidence 8899999999999987543 23322222222111000 0111 223455778888764 6778999988865
Q ss_pred ---cCCcEEe
Q 015981 259 ---AGVDLFD 265 (397)
Q Consensus 259 ---~GvD~FD 265 (397)
.|+|.+|
T Consensus 86 ~~~~g~d~Id 95 (333)
T PRK11815 86 AEDWGYDEIN 95 (333)
T ss_pred HHhcCCCEEE
Confidence 4999997
No 368
>cd08561 GDPD_cytoplasmic_ScUgpQ2_like Glycerophosphodiester phosphodiesterase domain of Streptomyces coelicolor cytoplasmic phosphodiesterases UgpQ2 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized cytoplasmic phosphodiesterases which predominantly exist in bacteria. The prototype of this family is a putative cytoplasmic phosphodiesterase encoded by gene ulpQ2 (SCO1419) in the Streptomyces coelicolor genome. It is distantly related to the Escherichia coli cytoplasmic phosphodiesterases UgpQ that catalyzes the hydrolysis of glycerophosphodiesters at the inner side of the cytoplasmic membrane to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=21.68 E-value=1e+02 Score=28.80 Aligned_cols=44 Identities=16% Similarity=0.083 Sum_probs=35.8
Q ss_pred HHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhh
Q 015981 227 SLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLT 273 (397)
Q Consensus 227 ~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a 273 (397)
++++.+.+. +++.++.++-++.++-.++.+|||.+-+.+|..+.
T Consensus 203 ~~v~~~~~~---G~~v~vWTVN~~~~~~~l~~~gVdgIiTD~p~~~~ 246 (249)
T cd08561 203 RFVRAAHAA---GLEVHVWTVNDPAEMRRLLDLGVDGIITDRPDLLL 246 (249)
T ss_pred HHHHHHHHC---CCEEEEEecCCHHHHHHHHhcCCCEEEcCCHHHHH
Confidence 445444433 67888899999999999999999999999998654
No 369
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=21.65 E-value=4.6e+02 Score=25.44 Aligned_cols=43 Identities=23% Similarity=0.242 Sum_probs=27.7
Q ss_pred HHHHHHHHcCCCCCCcccc-cCC-------CChHHHH----HHHHcCCcEEecch
Q 015981 226 PSLLNAVTDNLPKDWPRMI-CGL-------GLPEEVL----QGVAAGVDLFDSAY 268 (397)
Q Consensus 226 ~~~v~~~~~~Lp~~kpr~l-~G~-------g~P~~il----~~v~~GvD~FD~~~ 268 (397)
.++|+++.+.++.+.|..+ +.. .++.+.+ .+...|+|.++.+-
T Consensus 195 ~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~e~~~la~~l~~~G~d~i~vs~ 249 (327)
T cd02803 195 LEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLEEAIEIAKALEEAGVDALHVSG 249 (327)
T ss_pred HHHHHHHHHHcCCCceEEEEechhccCCCCCCHHHHHHHHHHHHHcCCCEEEeCC
Confidence 6778888888877776532 121 2455533 34568999998763
No 370
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=21.63 E-value=3.3e+02 Score=27.28 Aligned_cols=71 Identities=25% Similarity=0.338 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCCceEEEcCccCC--CchhhHHHHHHHHHcCCCCCCccc-ccCCCChHHHHHHHHcCCcEEec
Q 015981 194 EERKRCAQEVAVRNVSGYWIGGFGLG--ESMEERPSLLNAVTDNLPKDWPRM-ICGLGLPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 194 ~lR~~sa~~l~~~~~~G~~IgGl~~g--e~~~~~~~~v~~~~~~Lp~~kpr~-l~G~g~P~~il~~v~~GvD~FD~ 266 (397)
+.-.+.|+...+.|...|.++--+-+ ...++..++++.+.+.+. .+.. -+|.-++.+...+...|+|.+-.
T Consensus 87 eeIle~Ak~ak~~Ga~r~c~~aagr~~~~~~~~i~~~v~~Vk~~~~--le~c~slG~l~~eq~~~L~~aGvd~ynh 160 (335)
T COG0502 87 EEILEAAKKAKAAGATRFCMGAAGRGPGRDMEEVVEAIKAVKEELG--LEVCASLGMLTEEQAEKLADAGVDRYNH 160 (335)
T ss_pred HHHHHHHHHHHHcCCceEEEEEeccCCCccHHHHHHHHHHHHHhcC--cHHhhccCCCCHHHHHHHHHcChhheec
Confidence 33444555566666666666543332 445566777777776665 3333 35888999999999999998876
No 371
>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]
Probab=21.49 E-value=8e+02 Score=24.26 Aligned_cols=144 Identities=14% Similarity=0.188 Sum_probs=84.5
Q ss_pred ceEEEcC-CCceecChhhHHHHHHhcC-CcEEEEcCCCCCCCCCHHHHH---HHHHHHHHHHHHHHHhCCCCCCeEEeec
Q 015981 114 GASFETP-CGRRLIKPVEYMEMITSMK-PNLWATLADEVPAWANNKRNK---TSVDRTVKWLDECIARSPAGGAVFGSIV 188 (397)
Q Consensus 114 gv~~~s~-~G~~~ltpe~~~~~q~~i~-pDi~~~L~d~~~~~~~~kr~~---~sverT~~w~~~~l~~~~~~~~lf~~iq 188 (397)
|+.+-.. .|...=.-++|++..+..+ +|.+..= -.||...+...+. ..++..++|+++..+ -+++.=+-
T Consensus 96 ~~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielN-iScPnt~g~~~l~~~~e~l~~l~~~vk~~~~-----~Pv~vKl~ 169 (310)
T COG0167 96 GVNIGKNKGGPSEEAWADYARLLEEAGDADAIELN-ISCPNTPGGRALGQDPELLEKLLEAVKAATK-----VPVFVKLA 169 (310)
T ss_pred CcceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEE-ccCCCCCChhhhccCHHHHHHHHHHHHhccc-----CceEEEeC
Confidence 4444332 3333334577888888888 6877543 4555544422233 355555555554221 34666665
Q ss_pred CCCCHHHHHHHHHHHHhcCCceEEEc-----------------------CccCCCch-hhHHHHHHHHHcCCCCCCccc-
Q 015981 189 GGSNIEERKRCAQEVAVRNVSGYWIG-----------------------GFGLGESM-EERPSLLNAVTDNLPKDWPRM- 243 (397)
Q Consensus 189 Gg~~~~lR~~sa~~l~~~~~~G~~Ig-----------------------Gl~~ge~~-~~~~~~v~~~~~~Lp~~kpr~- 243 (397)
. +.+--.+.|+.+.+.+.+|+..- |++ |... +--.++|..+...+..+.|..
T Consensus 170 P--~~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~~~~~~~~~~~~GGLS-G~~ikp~al~~v~~l~~~~~~~ipIIG 246 (310)
T COG0167 170 P--NITDIDEIAKAAEEAGADGLIAINTTKSGMKIDLETKKPVLANETGGLS-GPPLKPIALRVVAELYKRLGGDIPIIG 246 (310)
T ss_pred C--CHHHHHHHHHHHHHcCCcEEEEEeeccccccccccccccccCcCCCCcC-cccchHHHHHHHHHHHHhcCCCCcEEE
Confidence 5 44444455666666677776532 222 1111 222567777778887778865
Q ss_pred ccCCCChHHHHHHHHcCCcEEec
Q 015981 244 ICGLGLPEEVLQGVAAGVDLFDS 266 (397)
Q Consensus 244 l~G~g~P~~il~~v~~GvD~FD~ 266 (397)
+=|+-+.+|.++-+.+|.++.-.
T Consensus 247 vGGI~s~~DA~E~i~aGA~~vQv 269 (310)
T COG0167 247 VGGIETGEDALEFILAGASAVQV 269 (310)
T ss_pred ecCcCcHHHHHHHHHcCCchhee
Confidence 34777899999999999997653
No 372
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=21.38 E-value=6.8e+02 Score=23.41 Aligned_cols=123 Identities=15% Similarity=0.195 Sum_probs=67.0
Q ss_pred hhHHHHHHhcCCcEEE---EcCCCCCCCCCHHHHHHHHHHH----------HHHHHHHHHhCCCCCCeEEeecCCCCHHH
Q 015981 129 VEYMEMITSMKPNLWA---TLADEVPAWANNKRNKTSVDRT----------VKWLDECIARSPAGGAVFGSIVGGSNIEE 195 (397)
Q Consensus 129 e~~~~~q~~i~pDi~~---~L~d~~~~~~~~kr~~~sverT----------~~w~~~~l~~~~~~~~lf~~iqGg~~~~l 195 (397)
.++++..+.-|.|++- +++|+. .+...++++.+|+ ..++++.-+.. +-.+ ++-+-+++-+
T Consensus 17 ~~~~~~l~~~Gad~iel~iPfsdPv---~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~--~~pv--~lm~y~n~~~ 89 (242)
T cd04724 17 LEILKALVEAGADIIELGIPFSDPV---ADGPVIQAASERALANGVTLKDVLELVKEIRKKN--TIPI--VLMGYYNPIL 89 (242)
T ss_pred HHHHHHHHHCCCCEEEECCCCCCCC---CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcC--CCCE--EEEEecCHHH
Confidence 4555666667999983 333322 3334555555444 44554432221 1121 1222224322
Q ss_pred H---HHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHc-CCcEE
Q 015981 196 R---KRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAA-GVDLF 264 (397)
Q Consensus 196 R---~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~-GvD~F 264 (397)
. .+-++.+.+.|++|+.+-.++ .++..++++.+.+.= -++..+....+|.+-+..+.. ..|.+
T Consensus 90 ~~G~~~fi~~~~~aG~~giiipDl~----~ee~~~~~~~~~~~g--~~~i~~i~P~T~~~~i~~i~~~~~~~v 156 (242)
T cd04724 90 QYGLERFLRDAKEAGVDGLIIPDLP----PEEAEEFREAAKEYG--LDLIFLVAPTTPDERIKKIAELASGFI 156 (242)
T ss_pred HhCHHHHHHHHHHCCCcEEEECCCC----HHHHHHHHHHHHHcC--CcEEEEeCCCCCHHHHHHHHhhCCCCE
Confidence 2 345777788899999997664 355666776666542 245556778887765555543 55554
No 373
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=21.35 E-value=2e+02 Score=28.33 Aligned_cols=53 Identities=25% Similarity=0.335 Sum_probs=35.7
Q ss_pred HHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCC---------hHHHHHHHHc
Q 015981 203 VAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGL---------PEEVLQGVAA 259 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~---------P~~il~~v~~ 259 (397)
+...+++|++| ++..++.++..-.+..+++.+ +||..+.|.=. |.++..++..
T Consensus 73 ~~~~~~dG~VV--tHGTDTmeeTA~~Ls~~l~~l--~kPVVlTGa~rp~~~~~sDg~~NL~~Av~~ 134 (323)
T smart00870 73 LADDGYDGVVV--THGTDTLEETAYFLSLTLDSL--DKPVVLTGAMRPATALSSDGPANLLDAVRV 134 (323)
T ss_pred hccCCCCEEEE--ecCCccHHHHHHHHHHHhhcC--CCCEEEECCCCCCCCCCchhHHHHHHHHHH
Confidence 33457889988 355677777777777777665 47877766543 5677777653
No 374
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=21.28 E-value=3.2e+02 Score=27.70 Aligned_cols=76 Identities=16% Similarity=0.159 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCceEEEcCccCCCchh-----------hHHHHHHHHHcCCCCCCccccc-----CCCChHHHHHHHHcCC
Q 015981 198 RCAQEVAVRNVSGYWIGGFGLGESME-----------ERPSLLNAVTDNLPKDWPRMIC-----GLGLPEEVLQGVAAGV 261 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~ge~~~-----------~~~~~v~~~~~~Lp~~kpr~l~-----G~g~P~~il~~v~~Gv 261 (397)
+.+.++.+.+++++. +|-+.+.... ...++..+..+.+.+..+|+++ |+.++.+|..++++|.
T Consensus 200 e~A~~~~~aGaDgV~-~G~gg~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGA 278 (369)
T TIGR01304 200 TTALHLMRTGAAGVI-VGPGGANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGA 278 (369)
T ss_pred HHHHHHHHcCCCEEE-ECCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCC
Q ss_pred cEEecchhHHhhh
Q 015981 262 DLFDSAYIYHLTI 274 (397)
Q Consensus 262 D~FD~~~p~~~a~ 274 (397)
|..=.--|...+.
T Consensus 279 daV~iGt~~a~a~ 291 (369)
T TIGR01304 279 DAVVLGSPLARAA 291 (369)
T ss_pred CEeeeHHHHHhhh
No 375
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=21.14 E-value=7.2e+02 Score=23.60 Aligned_cols=118 Identities=14% Similarity=0.073 Sum_probs=73.5
Q ss_pred eecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCCCCHHHHHHHHHHH
Q 015981 124 RLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEV 203 (397)
Q Consensus 124 ~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg~~~~lR~~sa~~l 203 (397)
...++.++.+.....|+|.+-.+.|..-...+.+.++. +.+.. + .+++.=-+-.+.. -+.+.
T Consensus 68 ~~~~~~~~A~~~~~~GA~aisvlte~~~f~g~~~~l~~-v~~~v------------~---iPvl~kdfi~~~~--qi~~a 129 (260)
T PRK00278 68 EDFDPVEIAKAYEAGGAACLSVLTDERFFQGSLEYLRA-ARAAV------------S---LPVLRKDFIIDPY--QIYEA 129 (260)
T ss_pred CCCCHHHHHHHHHhCCCeEEEEecccccCCCCHHHHHH-HHHhc------------C---CCEEeeeecCCHH--HHHHH
Confidence 46789999999999999999998776655444433333 22211 1 1122100111111 25566
Q ss_pred HhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEe
Q 015981 204 AVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFD 265 (397)
Q Consensus 204 ~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD 265 (397)
.+.|.+++.+.+-.. +.+++.++++.+... + .-.+.-+-+..++..+..+|+|++=
T Consensus 130 ~~~GAD~VlLi~~~l--~~~~l~~li~~a~~l---G-l~~lvevh~~~E~~~A~~~gadiIg 185 (260)
T PRK00278 130 RAAGADAILLIVAAL--DDEQLKELLDYAHSL---G-LDVLVEVHDEEELERALKLGAPLIG 185 (260)
T ss_pred HHcCCCEEEEEeccC--CHHHHHHHHHHHHHc---C-CeEEEEeCCHHHHHHHHHcCCCEEE
Confidence 678999998876543 235677777766653 1 1123456788999999999999775
No 376
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=21.08 E-value=3.1e+02 Score=25.35 Aligned_cols=68 Identities=12% Similarity=0.121 Sum_probs=43.9
Q ss_pred HHHHHHHhcCCceEEEcCccC-CCchhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEEecc
Q 015981 198 RCAQEVAVRNVSGYWIGGFGL-GESMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~-ge~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~FD~~ 267 (397)
+.++.+.+.+++.+.+-+... |.....-.++++.+.+.+ +.|.+.- |+.++.++..+...|+|-+=..
T Consensus 153 ~~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~i~~i~~~~--~iPvia~GGI~~~~di~~~~~~Ga~gv~vg 222 (241)
T PRK13585 153 EAAKRFEELGAGSILFTNVDVEGLLEGVNTEPVKELVDSV--DIPVIASGGVTTLDDLRALKEAGAAGVVVG 222 (241)
T ss_pred HHHHHHHHcCCCEEEEEeecCCCCcCCCCHHHHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEEE
Confidence 345556677888877755431 111111245566666665 3677665 7889999999999999976554
No 377
>PF13167 GTP-bdg_N: GTP-binding GTPase N-terminal
Probab=20.96 E-value=1.1e+02 Score=24.72 Aligned_cols=31 Identities=26% Similarity=0.256 Sum_probs=24.8
Q ss_pred CCCCCCcccccCCCChHHHHHHHH-cCCcEEe
Q 015981 235 NLPKDWPRMICGLGLPEEVLQGVA-AGVDLFD 265 (397)
Q Consensus 235 ~Lp~~kpr~l~G~g~P~~il~~v~-~GvD~FD 265 (397)
.++.-.|++.+|-|...+|-..+. .|+|++-
T Consensus 31 ~~~~~~p~~~iG~GK~eei~~~~~~~~~d~vv 62 (95)
T PF13167_consen 31 KRRKPDPKTYIGSGKVEEIKELIEELDADLVV 62 (95)
T ss_pred cCCCCCcceeechhHHHHHHHHHhhcCCCEEE
Confidence 444557899999999999999985 8888543
No 378
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=20.91 E-value=2.9e+02 Score=26.19 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=43.9
Q ss_pred HHHHHHHHhcCCceEEEcCcc-----CCCchhhHHHHHHHHHcCCCCCCccccc-CCCChHHHHHHH-HcCCcEEe
Q 015981 197 KRCAQEVAVRNVSGYWIGGFG-----LGESMEERPSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGV-AAGVDLFD 265 (397)
Q Consensus 197 ~~sa~~l~~~~~~G~~IgGl~-----~ge~~~~~~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v-~~GvD~FD 265 (397)
.+.++.+.+.+++.+.+-+.. .|-+ .++++.+.+.. +.|.+.. |++++.++..+. ..|+|-.-
T Consensus 155 ~e~~~~~~~~g~~~ii~~~i~~~G~~~G~d----~~~i~~~~~~~--~ipvIasGGv~s~eD~~~l~~~~GvdgVi 224 (258)
T PRK01033 155 LELAKEYEALGAGEILLNSIDRDGTMKGYD----LELLKSFRNAL--KIPLIALGGAGSLDDIVEAILNLGADAAA 224 (258)
T ss_pred HHHHHHHHHcCCCEEEEEccCCCCCcCCCC----HHHHHHHHhhC--CCCEEEeCCCCCHHHHHHHHHHCCCCEEE
Confidence 345666777888888876554 2333 44555555553 4677766 799999999999 79999764
No 379
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=20.81 E-value=2.9e+02 Score=29.03 Aligned_cols=67 Identities=12% Similarity=-0.022 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCceEEEcCccC---------CCchhhH---HHHHHHHHcCCCCCCccccc-CCCChHHHHHHHHcCCcEE
Q 015981 198 RCAQEVAVRNVSGYWIGGFGL---------GESMEER---PSLLNAVTDNLPKDWPRMIC-GLGLPEEVLQGVAAGVDLF 264 (397)
Q Consensus 198 ~sa~~l~~~~~~G~~IgGl~~---------ge~~~~~---~~~v~~~~~~Lp~~kpr~l~-G~g~P~~il~~v~~GvD~F 264 (397)
+.++.+.+.|++++-+|+-+. |-...+. .++.+...+. +.|.+-- |+-+|.||..|+++|.|..
T Consensus 278 ~~~~~l~~~G~d~i~vg~g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~---~~~viadGgi~~~~di~kala~GA~~v 354 (475)
T TIGR01303 278 EGVRDLLEAGANIIKVGVGPGAMCTTRMMTGVGRPQFSAVLECAAEARKL---GGHVWADGGVRHPRDVALALAAGASNV 354 (475)
T ss_pred HHHHHHHHhCCCEEEECCcCCccccCccccCCCCchHHHHHHHHHHHHHc---CCcEEEeCCCCCHHHHHHHHHcCCCEE
Confidence 456677788999998876431 1111222 2232222322 5665554 8889999999999999966
Q ss_pred ecc
Q 015981 265 DSA 267 (397)
Q Consensus 265 D~~ 267 (397)
=..
T Consensus 355 m~g 357 (475)
T TIGR01303 355 MVG 357 (475)
T ss_pred eec
Confidence 554
No 380
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=20.80 E-value=3.7e+02 Score=29.90 Aligned_cols=71 Identities=25% Similarity=0.320 Sum_probs=43.0
Q ss_pred HHHHHHhcCCceEEEcCcc------------------CCCchhhH----HHHHHHHHcCCCCCCcccc--c------CCC
Q 015981 199 CAQEVAVRNVSGYWIGGFG------------------LGESMEER----PSLLNAVTDNLPKDWPRMI--C------GLG 248 (397)
Q Consensus 199 sa~~l~~~~~~G~~IgGl~------------------~ge~~~~~----~~~v~~~~~~Lp~~kpr~l--~------G~g 248 (397)
+|+...+.|++|+-|-+-+ .|.+.+.+ .++++++.+.++.+.|.-+ . |-.
T Consensus 556 aA~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~ 635 (765)
T PRK08255 556 AARRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGN 635 (765)
T ss_pred HHHHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCC
Confidence 4555556788888774431 13344433 6778888888888877432 1 222
Q ss_pred ChHHHH---HH-HHcCCcEEecchh
Q 015981 249 LPEEVL---QG-VAAGVDLFDSAYI 269 (397)
Q Consensus 249 ~P~~il---~~-v~~GvD~FD~~~p 269 (397)
++++.+ .. .+.|+|+++.+..
T Consensus 636 ~~~~~~~~~~~l~~~g~d~i~vs~g 660 (765)
T PRK08255 636 TPDDAVEIARAFKAAGADLIDVSSG 660 (765)
T ss_pred CHHHHHHHHHHHHhcCCcEEEeCCC
Confidence 455433 22 4689999998743
No 381
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=20.68 E-value=6.8e+02 Score=23.52 Aligned_cols=84 Identities=14% Similarity=0.145 Sum_probs=49.4
Q ss_pred eEEeecCCC--CHHHHHHHHHHHHhcCCceEEEcCccCCCch-------------------------hhHHHHHHHHHcC
Q 015981 183 VFGSIVGGS--NIEERKRCAQEVAVRNVSGYWIGGFGLGESM-------------------------EERPSLLNAVTDN 235 (397)
Q Consensus 183 lf~~iqGg~--~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~-------------------------~~~~~~v~~~~~~ 235 (397)
.|-+..... +.+.-.+.++.+.+.|+ .++|+-++.|-+. .....+++.+.+.
T Consensus 123 ~lEitE~~~~~~~~~~~~~l~~L~~~G~-~ialDDFGtG~ssl~~L~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~l 201 (256)
T COG2200 123 VLEITESALIDDLDTALALLRQLRELGV-RIALDDFGTGYSSLSYLKRLPPDILKIDRSFVRDLETDARDQAIVRAIVAL 201 (256)
T ss_pred EEEEeCchhhcCHHHHHHHHHHHHHCCC-eEEEECCCCCHHHHHHHhhCCCCeEEECHHHHhhcccCcchHHHHHHHHHH
Confidence 555555443 33334445666666774 6778777765322 0111234433332
Q ss_pred CCC-CCcccccCCCChHHHHHHHHcCCcEEecc
Q 015981 236 LPK-DWPRMICGLGLPEEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 236 Lp~-~kpr~l~G~g~P~~il~~v~~GvD~FD~~ 267 (397)
--. +.....-||-+++++-.+-++|||.+-.-
T Consensus 202 a~~l~~~vvaEGVEt~~ql~~L~~~G~~~~QGy 234 (256)
T COG2200 202 AHKLGLTVVAEGVETEEQLDLLRELGCDYLQGY 234 (256)
T ss_pred HHHCCCEEEEeecCCHHHHHHHHHcCCCeEeec
Confidence 222 23344569999999999999999987644
No 382
>cd08582 GDPD_like_2 Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.
Probab=20.66 E-value=80 Score=29.21 Aligned_cols=32 Identities=13% Similarity=0.037 Sum_probs=29.1
Q ss_pred CCcccccCCCChHHHHHHHHcCCcEEecchhH
Q 015981 239 DWPRMICGLGLPEEVLQGVAAGVDLFDSAYIY 270 (397)
Q Consensus 239 ~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~ 270 (397)
.++.++..+.++.++..++.+|||.+-+.+|.
T Consensus 201 G~~v~~wTvn~~~~~~~l~~~GVdgi~TD~p~ 232 (233)
T cd08582 201 GLKLNVWTVDDAEDAKRLIELGVDSITTNRPG 232 (233)
T ss_pred CCEEEEEeCCCHHHHHHHHHCCCCEEEcCCCC
Confidence 56778889999999999999999999999885
No 383
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.60 E-value=7.2e+02 Score=24.50 Aligned_cols=77 Identities=9% Similarity=-0.042 Sum_probs=44.8
Q ss_pred CCHHHHHHHHHHHHhcCCc--e---EE-Ec----CccC--------CCchhhHHHHHHHHHcCCCCCCcccccCCC--Ch
Q 015981 191 SNIEERKRCAQEVAVRNVS--G---YW-IG----GFGL--------GESMEERPSLLNAVTDNLPKDWPRMICGLG--LP 250 (397)
Q Consensus 191 ~~~~lR~~sa~~l~~~~~~--G---~~-Ig----Gl~~--------ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g--~P 250 (397)
...+-|.+.+..+.+++.+ | |. +- |-.. +-+.++..+++..+.=.||...+++--|-- .+
T Consensus 205 Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~~~l~~ 284 (343)
T TIGR03551 205 ETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASWVKLGK 284 (343)
T ss_pred CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccccccCH
Confidence 4567788887777765443 1 21 11 3222 124456677776666677754444322211 24
Q ss_pred HHHHHHHHcCCcEEecc
Q 015981 251 EEVLQGVAAGVDLFDSA 267 (397)
Q Consensus 251 ~~il~~v~~GvD~FD~~ 267 (397)
..-..+...|+|-|+++
T Consensus 285 ~~~~~~l~~Gan~~~g~ 301 (343)
T TIGR03551 285 KLAQVALRCGANDLGGT 301 (343)
T ss_pred HHHHHHHhCCCccCCcc
Confidence 44577889999999986
No 384
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=20.45 E-value=3.9e+02 Score=26.40 Aligned_cols=67 Identities=21% Similarity=0.168 Sum_probs=33.6
Q ss_pred HHHHHHhcCCceEEEc-CccCCCchhhHHHHHHHHHcCCCCCCcc-----------cccCCCChHHHHHHHHcCCcEEe
Q 015981 199 CAQEVAVRNVSGYWIG-GFGLGESMEERPSLLNAVTDNLPKDWPR-----------MICGLGLPEEVLQGVAAGVDLFD 265 (397)
Q Consensus 199 sa~~l~~~~~~G~~Ig-Gl~~ge~~~~~~~~v~~~~~~Lp~~kpr-----------~l~G~g~P~~il~~v~~GvD~FD 265 (397)
.++++.+.++.-+.|- |.......+.+.++++.+.+..|.-+.. -..|.-+++.+..+-+.|+|.+-
T Consensus 78 ~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~i~ 156 (343)
T TIGR03551 78 RAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDSMP 156 (343)
T ss_pred HHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHHHhCccccc
Confidence 3444444555544443 3221122333455666555554421110 02466677777777888888664
No 385
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=20.39 E-value=5.4e+02 Score=21.89 Aligned_cols=62 Identities=13% Similarity=0.053 Sum_probs=33.2
Q ss_pred HHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCCCCCcccccCCC--C----hHHHHHHHHcCCc-EEe
Q 015981 203 VAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLG--L----PEEVLQGVAAGVD-LFD 265 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp~~kpr~l~G~g--~----P~~il~~v~~GvD-~FD 265 (397)
..+.+++-..+.++. +...+.+.++++...+.=..+-|.++=|.. . +.+...+.++|+| +|.
T Consensus 46 a~~~~adiVglS~L~-t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~~vf~ 114 (128)
T cd02072 46 AIETDADAILVSSLY-GHGEIDCKGLREKCDEAGLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFDRVFA 114 (128)
T ss_pred HHHcCCCEEEEeccc-cCCHHHHHHHHHHHHHCCCCCCeEEEECCCCCChhhhHHHHHHHHHcCCCEEEC
Confidence 334567777776654 444455666666555543334333333332 2 2344567888887 454
No 386
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=20.38 E-value=6.3e+02 Score=25.42 Aligned_cols=82 Identities=16% Similarity=0.159 Sum_probs=48.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEeecCC-CCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHH
Q 015981 154 ANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGG-SNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAV 232 (397)
Q Consensus 154 ~~~kr~~~sverT~~w~~~~l~~~~~~~~lf~~iqGg-~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~ 232 (397)
++.+.++...+.-.+|+.+..... ..-..++.|| ..++ .+.+-+...+++|+.+||.++ +.+.+.++++..
T Consensus 187 as~~~~~~~~~~Ir~~l~~~~~~~---~~~v~ILYGGSV~~~---N~~~l~~~~~iDG~LVG~asl--~~~~f~~Ii~~~ 258 (355)
T PRK14905 187 ASAEYADEKHAIIKQCLFELFAEE---SKKIPVLYGGSVNLE---NANELIMKPHIDGLFIGRSAW--DAQCFHALIADA 258 (355)
T ss_pred CCHHHHHHHHHHHHHHHHHHhccc---cCceeEEEeCcCCHH---HHHHHhcCCCCCEEEechhhc--cHHHHHHHHHHH
Confidence 345555555544444544332211 1234666665 4443 334445567899999999775 556778888887
Q ss_pred HcCCCCCCccc
Q 015981 233 TDNLPKDWPRM 243 (397)
Q Consensus 233 ~~~Lp~~kpr~ 243 (397)
.+.+-..|.-.
T Consensus 259 ~~~~~~~~~~~ 269 (355)
T PRK14905 259 LKALAGSKIDP 269 (355)
T ss_pred HHhccCCcccH
Confidence 77776655433
No 387
>cd08609 GDPD_GDE3 Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE3 and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in mammalian GDE3 (also known as glycerophosphodiester phosphodiesterase domain-containing protein 2 (GDPD2), Osteoblast differentiation promoting factor) and their metazoan homologs. Mammalian GDE3 is a transmembrane protein specifically expressed in bone tissues and spleen. It is a mammalian homolog of bacterial glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), which catalyzes the hydrolysis of various glycerophosphodiesters, and produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Mammalian GDE3 has been characterized as glycerophosphoinositol inositolphosphodiesterase (EC 3.1.4.43) that selectively hydrolyzes extracellular glycerophosphoinositol (GPI) to generate inositol 1-phosphate (Ins1P) and glycerol. Mammalia
Probab=20.18 E-value=1.8e+02 Score=28.77 Aligned_cols=44 Identities=9% Similarity=-0.034 Sum_probs=36.1
Q ss_pred HHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhh
Q 015981 227 SLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLT 273 (397)
Q Consensus 227 ~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a 273 (397)
+.++.+... .++.++..+-+|.++..++++|||.+-+.+|....
T Consensus 236 ~~v~~~~~~---G~~v~vWTVNd~~~~~~l~~~GVDgIiTD~P~~l~ 279 (315)
T cd08609 236 LEIKELRKD---NVSVNLWVVNEPWLFSLLWCSGVSSVTTNACQLLK 279 (315)
T ss_pred HHHHHHHHC---CCEEEEECCCCHHHHHHHHhcCCCEEEcCCHHHHH
Confidence 445544443 67888999999999999999999999999998654
No 388
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=20.06 E-value=1.2e+02 Score=19.13 Aligned_cols=24 Identities=21% Similarity=0.140 Sum_probs=16.9
Q ss_pred CCCChHHHHHHHHcCCcEEecchh
Q 015981 246 GLGLPEEVLQGVAAGVDLFDSAYI 269 (397)
Q Consensus 246 G~g~P~~il~~v~~GvD~FD~~~p 269 (397)
.+-.+..+-.++.+|||.+-+.+|
T Consensus 6 T~d~~~~~~~~l~~GVDgI~Td~p 29 (30)
T PF13653_consen 6 TPDKPASWRELLDLGVDGIMTDYP 29 (30)
T ss_dssp T--SHHHHHHHHHHT-SEEEES-H
T ss_pred cCCCHHHHHHHHHcCCCEeeCCCC
Confidence 344578888999999999988876
No 389
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=20.03 E-value=3.4e+02 Score=25.26 Aligned_cols=63 Identities=10% Similarity=0.138 Sum_probs=43.4
Q ss_pred HHhcCCceEEEcCccCCCchh----hHHHHHHHHHcCCCCCCcccccCCCChHHHHHHHHcCCcEEecch
Q 015981 203 VAVRNVSGYWIGGFGLGESME----ERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAY 268 (397)
Q Consensus 203 l~~~~~~G~~IgGl~~ge~~~----~~~~~v~~~~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~ 268 (397)
..+.+.+.+++|-+- ..++. .-.+.++++.+.. +.|.+..|--++.++..+...|+|.+=...
T Consensus 127 A~~~gaDYv~~Gpv~-t~tK~~~~p~gl~~l~~~~~~~--~iPvvAIGGI~~~n~~~~~~~GA~giAvis 193 (221)
T PRK06512 127 IGELRPDYLFFGKLG-ADNKPEAHPRNLSLAEWWAEMI--EIPCIVQAGSDLASAVEVAETGAEFVALER 193 (221)
T ss_pred hhhcCCCEEEECCCC-CCCCCCCCCCChHHHHHHHHhC--CCCEEEEeCCCHHHHHHHHHhCCCEEEEhH
Confidence 335788999998773 21211 1134566665554 588888876699999999999999876553
Done!