Query 015983
Match_columns 397
No_of_seqs 337 out of 2914
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 02:43:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03210 Resistant to P. syrin 99.9 7.5E-26 1.6E-30 255.4 23.0 219 1-224 703-1006(1153)
2 KOG0617 Ras suppressor protein 99.3 4.4E-14 9.6E-19 124.1 -4.6 138 3-143 34-189 (264)
3 PLN00113 leucine-rich repeat r 99.3 1.2E-11 2.7E-16 138.2 10.0 138 2-139 118-272 (968)
4 PLN00113 leucine-rich repeat r 99.2 1.7E-11 3.7E-16 137.0 8.9 139 1-139 139-296 (968)
5 KOG0472 Leucine-rich repeat pr 99.2 8.6E-12 1.9E-16 122.0 3.2 91 49-141 428-542 (565)
6 KOG0444 Cytoskeletal regulator 99.2 2.2E-12 4.8E-17 131.8 -1.5 114 24-139 155-280 (1255)
7 KOG0444 Cytoskeletal regulator 99.2 3.2E-12 6.9E-17 130.6 -0.7 136 1-142 102-260 (1255)
8 KOG0472 Leucine-rich repeat pr 99.1 2.5E-12 5.5E-17 125.7 -4.1 91 46-140 196-310 (565)
9 PLN03210 Resistant to P. syrin 99.0 7.7E-10 1.7E-14 125.9 10.5 115 24-143 616-741 (1153)
10 KOG0617 Ras suppressor protein 99.0 1E-10 2.3E-15 103.0 -0.1 102 24-140 38-140 (264)
11 KOG0618 Serine/threonine phosp 98.9 2.2E-10 4.8E-15 121.9 -1.1 86 53-141 380-466 (1081)
12 PRK15387 E3 ubiquitin-protein 98.8 4.4E-09 9.4E-14 113.7 7.4 75 58-140 384-458 (788)
13 PRK15370 E3 ubiquitin-protein 98.8 1.3E-08 2.9E-13 110.2 9.4 79 57-143 284-362 (754)
14 PRK15387 E3 ubiquitin-protein 98.7 2.7E-08 5.9E-13 107.6 8.8 127 3-144 223-359 (788)
15 PRK15370 E3 ubiquitin-protein 98.7 1.1E-08 2.4E-13 110.8 5.8 130 3-143 242-383 (754)
16 KOG4194 Membrane glycoprotein 98.7 3.3E-09 7.2E-14 108.3 1.1 116 24-141 274-430 (873)
17 KOG0532 Leucine-rich repeat (L 98.7 9.5E-10 2.1E-14 111.9 -2.9 182 6-192 54-270 (722)
18 KOG0618 Serine/threonine phosp 98.7 2.1E-09 4.6E-14 114.5 -0.9 89 46-138 396-487 (1081)
19 PF14580 LRR_9: Leucine-rich r 98.6 4.4E-08 9.5E-13 88.0 5.0 101 24-142 24-128 (175)
20 KOG1259 Nischarin, modulator o 98.6 8E-09 1.7E-13 98.3 -1.3 124 3-144 285-416 (490)
21 KOG4194 Membrane glycoprotein 98.5 8E-08 1.7E-12 98.4 4.6 115 24-140 202-330 (873)
22 KOG0532 Leucine-rich repeat (L 98.5 2E-08 4.3E-13 102.4 -1.4 129 7-140 80-224 (722)
23 PLN03150 hypothetical protein; 98.4 4.5E-07 9.7E-12 97.1 8.1 83 58-140 420-503 (623)
24 COG4886 Leucine-rich repeat (L 98.3 6E-07 1.3E-11 90.5 4.0 116 23-140 120-245 (394)
25 PF13855 LRR_8: Leucine rich r 98.2 9.5E-07 2E-11 65.0 3.1 57 56-113 1-59 (61)
26 PLN03150 hypothetical protein; 98.2 2.4E-06 5.1E-11 91.6 6.5 91 47-137 433-525 (623)
27 COG4886 Leucine-rich repeat (L 98.2 9E-07 1.9E-11 89.2 3.1 140 3-145 117-273 (394)
28 PRK15386 type III secretion pr 98.2 4.9E-06 1.1E-10 83.8 7.8 56 2-74 52-113 (426)
29 KOG4658 Apoptotic ATPase [Sign 98.1 8.9E-07 1.9E-11 97.6 2.1 96 3-112 546-651 (889)
30 PF14580 LRR_9: Leucine-rich r 98.1 1.7E-06 3.7E-11 77.8 2.9 89 54-146 17-107 (175)
31 cd00116 LRR_RI Leucine-rich re 98.1 2E-06 4.4E-11 83.4 3.6 84 56-140 137-234 (319)
32 cd00116 LRR_RI Leucine-rich re 98.1 1.5E-06 3.2E-11 84.3 2.6 137 2-140 81-263 (319)
33 KOG1259 Nischarin, modulator o 98.0 1.3E-06 2.9E-11 83.3 1.0 88 52-142 280-367 (490)
34 KOG4237 Extracellular matrix p 98.0 3.6E-07 7.9E-12 89.9 -3.2 104 24-141 72-178 (498)
35 KOG4237 Extracellular matrix p 98.0 1.8E-06 3.9E-11 85.1 0.9 66 75-142 270-337 (498)
36 KOG3207 Beta-tubulin folding c 98.0 1.1E-06 2.4E-11 87.5 -0.6 88 54-143 220-317 (505)
37 KOG4658 Apoptotic ATPase [Sign 98.0 5E-06 1.1E-10 91.8 3.7 86 52-138 567-653 (889)
38 PF13855 LRR_8: Leucine rich r 97.9 9.3E-06 2E-10 59.7 3.5 59 79-139 1-61 (61)
39 PF12799 LRR_4: Leucine Rich r 97.8 1.9E-05 4.2E-10 54.4 3.6 41 56-97 1-41 (44)
40 KOG3207 Beta-tubulin folding c 97.4 3.1E-05 6.7E-10 77.4 0.2 136 1-141 171-340 (505)
41 KOG4579 Leucine-rich repeat (L 97.4 1.4E-05 3E-10 68.5 -2.0 107 24-143 32-139 (177)
42 PRK15386 type III secretion pr 97.4 0.00021 4.5E-09 72.2 5.6 79 54-143 50-128 (426)
43 KOG1859 Leucine-rich repeat pr 97.4 8.6E-06 1.9E-10 85.7 -4.4 84 53-141 184-268 (1096)
44 KOG3665 ZYG-1-like serine/thre 97.4 0.0001 2.3E-09 79.6 3.5 124 3-141 123-264 (699)
45 PF12799 LRR_4: Leucine Rich r 97.4 0.00017 3.6E-09 49.7 3.3 32 80-112 2-33 (44)
46 KOG4579 Leucine-rich repeat (L 97.4 1.3E-05 2.8E-10 68.7 -3.2 102 4-121 29-140 (177)
47 KOG0531 Protein phosphatase 1, 97.0 0.00022 4.8E-09 72.7 0.8 85 53-141 115-200 (414)
48 KOG0531 Protein phosphatase 1, 96.7 0.00085 1.8E-08 68.4 2.4 90 51-144 90-179 (414)
49 KOG1859 Leucine-rich repeat pr 96.5 5.1E-05 1.1E-09 80.0 -7.8 83 53-139 206-291 (1096)
50 KOG1644 U2-associated snRNP A' 96.2 0.0077 1.7E-07 55.0 5.1 96 24-136 47-149 (233)
51 KOG3665 ZYG-1-like serine/thre 96.0 0.006 1.3E-07 66.2 4.3 96 1-112 147-259 (699)
52 KOG1909 Ran GTPase-activating 95.6 0.0023 4.9E-08 62.7 -1.2 85 55-140 156-254 (382)
53 KOG1644 U2-associated snRNP A' 95.5 0.021 4.5E-07 52.2 4.8 85 56-143 42-129 (233)
54 PF00560 LRR_1: Leucine Rich R 95.3 0.0054 1.2E-07 35.5 0.2 21 57-77 1-21 (22)
55 KOG1909 Ran GTPase-activating 95.2 0.013 2.8E-07 57.5 2.7 88 53-141 117-227 (382)
56 KOG2120 SCF ubiquitin ligase, 94.5 0.0064 1.4E-07 58.6 -1.3 80 56-137 286-373 (419)
57 KOG2739 Leucine-rich acidic nu 93.3 0.062 1.3E-06 50.8 2.7 84 56-141 43-130 (260)
58 KOG2123 Uncharacterized conser 93.1 0.0046 1E-07 59.0 -5.0 79 53-133 38-123 (388)
59 PF13504 LRR_7: Leucine rich r 92.9 0.066 1.4E-06 29.0 1.4 16 57-72 2-17 (17)
60 KOG2120 SCF ubiquitin ligase, 92.8 0.021 4.7E-07 55.1 -1.0 111 2-114 234-374 (419)
61 PF13504 LRR_7: Leucine rich r 92.3 0.082 1.8E-06 28.6 1.3 17 2-19 1-17 (17)
62 PF00560 LRR_1: Leucine Rich R 92.1 0.059 1.3E-06 31.1 0.6 17 105-122 2-18 (22)
63 KOG2982 Uncharacterized conser 91.5 0.046 1E-06 52.9 -0.5 83 54-141 69-160 (418)
64 KOG2123 Uncharacterized conser 91.4 0.016 3.6E-07 55.4 -3.6 82 55-140 18-101 (388)
65 smart00370 LRR Leucine-rich re 89.7 0.24 5.2E-06 29.5 1.7 20 55-74 1-20 (26)
66 smart00369 LRR_TYP Leucine-ric 89.7 0.24 5.2E-06 29.5 1.7 20 55-74 1-20 (26)
67 KOG2982 Uncharacterized conser 89.1 0.13 2.8E-06 49.9 0.3 78 24-113 76-156 (418)
68 KOG2739 Leucine-rich acidic nu 89.0 0.28 6E-06 46.5 2.5 62 54-117 63-130 (260)
69 KOG0473 Leucine-rich repeat pr 88.2 0.015 3.2E-07 54.4 -6.4 83 55-139 41-123 (326)
70 smart00369 LRR_TYP Leucine-ric 82.7 1 2.2E-05 26.7 1.8 19 1-20 1-19 (26)
71 smart00370 LRR Leucine-rich re 82.7 1 2.2E-05 26.7 1.8 19 1-20 1-19 (26)
72 KOG0473 Leucine-rich repeat pr 81.3 0.07 1.5E-06 50.0 -5.4 76 24-114 47-122 (326)
73 PF13306 LRR_5: Leucine rich r 76.6 8.1 0.00018 31.6 6.2 79 53-136 9-90 (129)
74 COG5238 RNA1 Ran GTPase-activa 75.6 0.89 1.9E-05 43.7 0.0 131 2-140 92-255 (388)
75 KOG3864 Uncharacterized conser 75.0 0.31 6.7E-06 44.7 -3.1 79 58-136 103-185 (221)
76 KOG1947 Leucine rich repeat pr 68.3 1.3 2.9E-05 44.9 -0.7 61 56-116 243-308 (482)
77 smart00364 LRR_BAC Leucine-ric 67.1 3.4 7.5E-05 25.0 1.2 17 57-73 3-19 (26)
78 PF13306 LRR_5: Leucine rich r 65.9 17 0.00037 29.6 5.8 79 52-136 31-112 (129)
79 smart00367 LRR_CC Leucine-rich 65.1 5 0.00011 23.8 1.7 16 1-16 1-16 (26)
80 smart00365 LRR_SD22 Leucine-ri 64.1 6.2 0.00013 23.8 1.9 19 127-145 2-20 (26)
81 KOG4341 F-box protein containi 63.6 3.1 6.7E-05 42.3 0.9 15 2-16 294-308 (483)
82 PF10650 zf-C3H1: Putative zin 63.4 3.7 8E-05 24.1 0.8 16 338-353 2-17 (23)
83 COG5238 RNA1 Ran GTPase-activa 62.5 4.4 9.5E-05 39.2 1.6 33 55-87 29-66 (388)
84 KOG3864 Uncharacterized conser 57.2 2.2 4.8E-05 39.2 -1.3 60 53-112 122-185 (221)
85 KOG1947 Leucine rich repeat pr 56.7 4.9 0.00011 40.8 1.0 86 54-139 212-307 (482)
86 PF13516 LRR_6: Leucine Rich r 48.1 12 0.00026 21.5 1.4 13 1-13 1-13 (24)
87 smart00368 LRR_RI Leucine rich 37.2 25 0.00054 21.3 1.6 14 56-69 2-15 (28)
88 KOG4341 F-box protein containi 32.9 16 0.00035 37.2 0.4 87 54-140 318-414 (483)
No 1
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=7.5e-26 Score=255.38 Aligned_cols=219 Identities=26% Similarity=0.390 Sum_probs=132.3
Q ss_pred CCCCcEEeccCCCCCccCCCcce----EEeecCCccccchhh--hhhhccc-----------------------------
Q 015983 1 MKSLKTLVLSGCLKLKKFPDIVQ----VLWDGTDIRELSFAI--ELLFRLV----------------------------- 45 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP~~~~----L~Ls~n~l~~Lp~si--~~L~~L~----------------------------- 45 (397)
|++|+.|+|+||+.++.+|.... |+|++|.++.+|..+ .+|..|.
T Consensus 703 l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~ 782 (1153)
T PLN03210 703 LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTR 782 (1153)
T ss_pred CCCCCEEeCCCCCCccccccccCCcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchh
Confidence 45777888888877777775433 888888888888654 1222111
Q ss_pred ---------cccCccCCCCCCCCEEEeeCC-CCCcCCccccCCCCCCEEEecCCCCCC--------------------CC
Q 015983 46 ---------QEFPEKTSSKDQLLEIHLEGT-AIRGLPASIELLSGNVLLNLKDRKNLK--------------------SL 95 (397)
Q Consensus 46 ---------~~~P~~l~~l~~L~~L~Ls~~-~i~~lP~si~~L~~L~~L~Ls~c~~l~--------------------~L 95 (397)
..+|..+++|++|+.|+|++| .++.+|..+ ++++|+.|+|++|+.+. .+
T Consensus 783 L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~i 861 (1153)
T PLN03210 783 LFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEV 861 (1153)
T ss_pred eeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccccccCEeECCCCCCccC
Confidence 224555555666666666654 455555544 34445555554443332 23
Q ss_pred ChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccc--cCCCC--------------cccccCcC
Q 015983 96 PSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIA--QKDSD--------------SWKKNVDK 159 (397)
Q Consensus 96 P~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~--~l~~~--------------~~~~~~~~ 159 (397)
|.++..+++|+.|+|++|++++.+|..+..++.|+.+++++|. .|..++ ..+.. .+...+.+
T Consensus 862 P~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~--~L~~~~l~~~~~~~~~~~~n~~~~~p~~~~l~f~n 939 (1153)
T PLN03210 862 PWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG--ALTEASWNGSPSEVAMATDNIHSKLPSTVCINFIN 939 (1153)
T ss_pred hHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc--ccccccCCCCchhhhhhcccccccCCchhcccccc
Confidence 4444455556666666666666665555555566666655553 222111 00000 01112345
Q ss_pred ceeecccccccc---cceeecCCCCccccccccCCCCCeEE-EeCCCCCcCCCCceeEEEEEEEecCCC
Q 015983 160 GIKLSTTADYLR---DFSIVVPGSEIPEWFEYQNNEGSSIT-ISTPPKTYKNSKLLGYAMCCVFHVPKY 224 (397)
Q Consensus 160 ~~~l~~~~~~~~---~~~~~lPG~~IP~Wf~~qs~~Gssit-i~lp~~~~~~~~~~gf~~cvv~~~~~~ 224 (397)
|+++.+.+.... ...+++||.++|+||.||+ .|++++ |.+|+.|+ ...|+||++|+|+++...
T Consensus 940 C~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~-~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~ 1006 (1153)
T PLN03210 940 CFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRT-TGASLTNIPLLHISP-CQPFFRFRACAVVDSESF 1006 (1153)
T ss_pred ccCCCchhhhcccccceEEECCCccCchhccCCc-ccceeeeeccCCccc-CCCccceEEEEEEecCcc
Confidence 555554332211 1357899999999999999 999998 99999998 778999999999987753
No 2
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.32 E-value=4.4e-14 Score=124.09 Aligned_cols=138 Identities=22% Similarity=0.306 Sum_probs=112.5
Q ss_pred CCcEEeccCCCCCccCCCcce-------EEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCC
Q 015983 3 SLKTLVLSGCLKLKKFPDIVQ-------VLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGT 66 (397)
Q Consensus 3 sL~~L~LsgC~~L~~lP~~~~-------L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~ 66 (397)
..+.|-||+| ++..+|.... |++++|.|+++|.+|..|.+|. ..+|..++.++.|+.|||.+|
T Consensus 34 ~ITrLtLSHN-Kl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltyn 112 (264)
T KOG0617|consen 34 NITRLTLSHN-KLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYN 112 (264)
T ss_pred hhhhhhcccC-ceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccc
Confidence 3456778886 5666664433 7888888999998888888876 567888888888889999888
Q ss_pred CCC--cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983 67 AIR--GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 67 ~i~--~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
++. .+|..|..+..|+.|.|+. +.+..+|..+++|++|+.|.+.. +.+-++|..++.+..|+.|++.+|.++-++
T Consensus 113 nl~e~~lpgnff~m~tlralyl~d-ndfe~lp~dvg~lt~lqil~lrd-ndll~lpkeig~lt~lrelhiqgnrl~vlp 189 (264)
T KOG0617|consen 113 NLNENSLPGNFFYMTTLRALYLGD-NDFEILPPDVGKLTNLQILSLRD-NDLLSLPKEIGDLTRLRELHIQGNRLTVLP 189 (264)
T ss_pred ccccccCCcchhHHHHHHHHHhcC-CCcccCChhhhhhcceeEEeecc-CchhhCcHHHHHHHHHHHHhcccceeeecC
Confidence 887 6888888888888888888 78888998899999999999998 678889999999999999999998776543
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.26 E-value=1.2e-11 Score=138.17 Aligned_cols=138 Identities=19% Similarity=0.215 Sum_probs=79.9
Q ss_pred CCCcEEeccCCCCCccCC-----CcceEEeecCCcc-ccchhhhhhhccc----------cccCccCCCCCCCCEEEeeC
Q 015983 2 KSLKTLVLSGCLKLKKFP-----DIVQVLWDGTDIR-ELSFAIELLFRLV----------QEFPEKTSSKDQLLEIHLEG 65 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP-----~~~~L~Ls~n~l~-~Lp~si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~ 65 (397)
++|++|+|++|...+.+| .+..|+|++|.+. .+|..++++++|+ +.+|..++++++|++|+|++
T Consensus 118 ~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 197 (968)
T PLN00113 118 SSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLAS 197 (968)
T ss_pred CCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccC
Confidence 455556665554333222 2333666666665 4566666655554 34566666666666666666
Q ss_pred CCCC-cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcc
Q 015983 66 TAIR-GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKF 139 (397)
Q Consensus 66 ~~i~-~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~ 139 (397)
|.+. .+|..++.+++|+.|+|++|+....+|..++++++|++|++++|...+.+|..++.+++|+.|++++|.+
T Consensus 198 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l 272 (968)
T PLN00113 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKL 272 (968)
T ss_pred CCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCee
Confidence 6655 4566666666666666666443345666666666666666666554445565556666666666665554
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.23 E-value=1.7e-11 Score=137.04 Aligned_cols=139 Identities=19% Similarity=0.202 Sum_probs=81.2
Q ss_pred CCCCcEEeccCCCCCccCCC-------cceEEeecCCcc-ccchhhhhhhccc----------cccCccCCCCCCCCEEE
Q 015983 1 MKSLKTLVLSGCLKLKKFPD-------IVQVLWDGTDIR-ELSFAIELLFRLV----------QEFPEKTSSKDQLLEIH 62 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP~-------~~~L~Ls~n~l~-~Lp~si~~L~~L~----------~~~P~~l~~l~~L~~L~ 62 (397)
+++|++|+|++|.....+|. +..|+|++|.+. .+|..++++++|+ +.+|..++.|++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 35677777777754334443 233777777665 5666666666554 34566666666666666
Q ss_pred eeCCCCC-cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcc
Q 015983 63 LEGTAIR-GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKF 139 (397)
Q Consensus 63 Ls~~~i~-~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~ 139 (397)
|++|.+. .+|..++.+++|+.|++++|+....+|..++++++|++|++++|.....+|..+.++++|+.|++++|.+
T Consensus 219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l 296 (968)
T PLN00113 219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296 (968)
T ss_pred CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCee
Confidence 6666665 5566666666666666666443345555566666666666665544444555555555555555555543
No 5
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.19 E-value=8.6e-12 Score=122.04 Aligned_cols=91 Identities=24% Similarity=0.364 Sum_probs=73.2
Q ss_pred CccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChh------------------------ccCCCc
Q 015983 49 PEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPST------------------------INGLRC 104 (397)
Q Consensus 49 P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~------------------------i~~L~s 104 (397)
|..++.+++|..|+|++|.+-.+|..++.+..|+.|+++. |++..+|.. +.++.+
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~lv~Lq~LnlS~-NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~n 506 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLNDLPEEMGSLVRLQTLNLSF-NRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRN 506 (565)
T ss_pred hHHHHhhhcceeeecccchhhhcchhhhhhhhhheecccc-cccccchHHHhhHHHHHHHHhccccccccChHHhhhhhh
Confidence 3445667888899999998889998888888899999987 466554433 557778
Q ss_pred CceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983 105 LRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 105 L~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~ 141 (397)
|.+|||.+ +.++++|..+++|.+|+.|.+.||+|+.
T Consensus 507 L~tLDL~n-Ndlq~IPp~LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 507 LTTLDLQN-NDLQQIPPILGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred cceeccCC-CchhhCChhhccccceeEEEecCCccCC
Confidence 88888887 6888899889999999999999998874
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.18 E-value=2.2e-12 Score=131.76 Aligned_cols=114 Identities=26% Similarity=0.327 Sum_probs=48.2
Q ss_pred EEeecCCccccchhhhhhhcccc----ccC------ccCCCCCCCCEEEeeCCCC--CcCCccccCCCCCCEEEecCCCC
Q 015983 24 VLWDGTDIRELSFAIELLFRLVQ----EFP------EKTSSKDQLLEIHLEGTAI--RGLPASIELLSGNVLLNLKDRKN 91 (397)
Q Consensus 24 L~Ls~n~l~~Lp~si~~L~~L~~----~~P------~~l~~l~~L~~L~Ls~~~i--~~lP~si~~L~~L~~L~Ls~c~~ 91 (397)
|+|+.|.+..||+.+..|..|+. .=| .-+..|++|+.|.+++++- ..+|.++..|.+|..++++. |+
T Consensus 155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~ 233 (1255)
T KOG0444|consen 155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NN 233 (1255)
T ss_pred hccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cC
Confidence 55555666666665554444330 000 0011233344444444322 23444444444555555543 44
Q ss_pred CCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcc
Q 015983 92 LKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKF 139 (397)
Q Consensus 92 l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~ 139 (397)
+..+|+.+.++.+|+.|+||+ +.+..+.-..+...+|++|+++.|++
T Consensus 234 Lp~vPecly~l~~LrrLNLS~-N~iteL~~~~~~W~~lEtLNlSrNQL 280 (1255)
T KOG0444|consen 234 LPIVPECLYKLRNLRRLNLSG-NKITELNMTEGEWENLETLNLSRNQL 280 (1255)
T ss_pred CCcchHHHhhhhhhheeccCc-CceeeeeccHHHHhhhhhhccccchh
Confidence 444455444444555454444 23333333333333334444443333
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.17 E-value=3.2e-12 Score=130.63 Aligned_cols=136 Identities=22% Similarity=0.351 Sum_probs=96.7
Q ss_pred CCCCcEEeccCCCCCccCCCcce-------EEeecCCccccchhhh-hhhccc---------cccCccCCCCCCCCEEEe
Q 015983 1 MKSLKTLVLSGCLKLKKFPDIVQ-------VLWDGTDIRELSFAIE-LLFRLV---------QEFPEKTSSKDQLLEIHL 63 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP~~~~-------L~Ls~n~l~~Lp~si~-~L~~L~---------~~~P~~l~~l~~L~~L~L 63 (397)
|+-|.+||||+| .|++.|.... |+|++|+|..||.++. +|+.|. +.+|+-+..+.+|+.|.|
T Consensus 102 l~dLt~lDLShN-qL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~L 180 (1255)
T KOG0444|consen 102 LKDLTILDLSHN-QLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKL 180 (1255)
T ss_pred cccceeeecchh-hhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhc
Confidence 456888999997 6888886543 8999999999998763 444432 444554455555555555
Q ss_pred eCCCCC-----cCCccccCCCCCCEEEecCCC-CCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCC
Q 015983 64 EGTAIR-----GLPASIELLSGNVLLNLKDRK-NLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVT 137 (397)
Q Consensus 64 s~~~i~-----~lP~si~~L~~L~~L~Ls~c~-~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n 137 (397)
++|.+. ++| .+++|+.|.+++-+ -+..+|.++..|.+|..+|+|. ++|..+|+.+-++++|+.|++++|
T Consensus 181 s~NPL~hfQLrQLP----smtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~N 255 (1255)
T KOG0444|consen 181 SNNPLNHFQLRQLP----SMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSGN 255 (1255)
T ss_pred CCChhhHHHHhcCc----cchhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCcC
Confidence 555433 233 24455555555422 2335788888999999999997 789999999999999999999999
Q ss_pred ccccc
Q 015983 138 KFAKA 142 (397)
Q Consensus 138 ~~~~L 142 (397)
.+++|
T Consensus 256 ~iteL 260 (1255)
T KOG0444|consen 256 KITEL 260 (1255)
T ss_pred ceeee
Confidence 98864
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.11 E-value=2.5e-12 Score=125.71 Aligned_cols=91 Identities=27% Similarity=0.408 Sum_probs=55.9
Q ss_pred cccCccCCCCCCCCEEEeeCCCCCcCCcccc------------------------CCCCCCEEEecCCCCCCCCChhccC
Q 015983 46 QEFPEKTSSKDQLLEIHLEGTAIRGLPASIE------------------------LLSGNVLLNLKDRKNLKSLPSTING 101 (397)
Q Consensus 46 ~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~------------------------~L~~L~~L~Ls~c~~l~~LP~~i~~ 101 (397)
+.+|+.++.|.+|+.|||..|.|..+| .|. +|.+|..|||+. |+++++|..+..
T Consensus 196 ~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~cl 273 (565)
T KOG0472|consen 196 ETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICL 273 (565)
T ss_pred hcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccc-cccccCchHHHH
Confidence 678888888888888888888887777 333 455555555555 455555555555
Q ss_pred CCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccc
Q 015983 102 LRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 102 L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~ 140 (397)
|.+|++||+++ +.+..+|..++++ .|+.|.+.||+++
T Consensus 274 LrsL~rLDlSN-N~is~Lp~sLgnl-hL~~L~leGNPlr 310 (565)
T KOG0472|consen 274 LRSLERLDLSN-NDISSLPYSLGNL-HLKFLALEGNPLR 310 (565)
T ss_pred hhhhhhhcccC-CccccCCcccccc-eeeehhhcCCchH
Confidence 55555555555 3455555555555 4555555555544
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.03 E-value=7.7e-10 Score=125.91 Aligned_cols=115 Identities=28% Similarity=0.392 Sum_probs=65.9
Q ss_pred EEeecCCccccchhhhhhhccc----------cccCccCCCCCCCCEEEeeCC-CCCcCCccccCCCCCCEEEecCCCCC
Q 015983 24 VLWDGTDIRELSFAIELLFRLV----------QEFPEKTSSKDQLLEIHLEGT-AIRGLPASIELLSGNVLLNLKDRKNL 92 (397)
Q Consensus 24 L~Ls~n~l~~Lp~si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~~-~i~~lP~si~~L~~L~~L~Ls~c~~l 92 (397)
|+|.++.+..+|..+..++.|+ ..+|. +..+++|+.|+|++| .+.++|.+++++++|+.|++++|+.+
T Consensus 616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L 694 (1153)
T PLN03210 616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENL 694 (1153)
T ss_pred EECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCc
Confidence 5555555555555544444443 22332 445566666666665 45566666666666666666666666
Q ss_pred CCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983 93 KSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 93 ~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
..+|..+ ++++|+.|++++|..++.+|... .+|+.|++++|.+..++
T Consensus 695 ~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~---~nL~~L~L~~n~i~~lP 741 (1153)
T PLN03210 695 EILPTGI-NLKSLYRLNLSGCSRLKSFPDIS---TNISWLDLDETAIEEFP 741 (1153)
T ss_pred CccCCcC-CCCCCCEEeCCCCCCcccccccc---CCcCeeecCCCcccccc
Confidence 6666544 56666666666666666665432 34556666666654433
No 10
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.96 E-value=1e-10 Score=103.02 Aligned_cols=102 Identities=21% Similarity=0.242 Sum_probs=62.2
Q ss_pred EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCC
Q 015983 24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLR 103 (397)
Q Consensus 24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~ 103 (397)
|-|+.|.++.+|+.|..| .+|+.|++.+|.|+++|.+|+.|++|+.|+++- +++..+|..++.++
T Consensus 38 LtLSHNKl~~vppnia~l--------------~nlevln~~nnqie~lp~~issl~klr~lnvgm-nrl~~lprgfgs~p 102 (264)
T KOG0617|consen 38 LTLSHNKLTVVPPNIAEL--------------KNLEVLNLSNNQIEELPTSISSLPKLRILNVGM-NRLNILPRGFGSFP 102 (264)
T ss_pred hhcccCceeecCCcHHHh--------------hhhhhhhcccchhhhcChhhhhchhhhheecch-hhhhcCccccCCCc
Confidence 888999999998888554 455666666666666666666666666666653 55666666666666
Q ss_pred cCceeeeecccCC-ccCCcccCCCCCCcEEECCCCccc
Q 015983 104 CLRMLHLSGCSKL-KNAPETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 104 sL~~L~Ls~C~~L-~~lP~~~~~L~~L~~L~ls~n~~~ 140 (397)
.|+.|||++|+.- ..+|..+..+..|+.|+++.|.|.
T Consensus 103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndfe 140 (264)
T KOG0617|consen 103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE 140 (264)
T ss_pred hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc
Confidence 6666666654322 234444444445555555555443
No 11
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.88 E-value=2.2e-10 Score=121.87 Aligned_cols=86 Identities=24% Similarity=0.348 Sum_probs=50.2
Q ss_pred CCCCCCCEEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcE
Q 015983 53 SSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLES 131 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~ 131 (397)
.++++|+.|+|++|.+..+|.+ +.+|..|+.|+|+| |+++.||..+..+..|++|...+ +.+..+| .+..++.|+.
T Consensus 380 ~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSG-NkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~ 456 (1081)
T KOG0618|consen 380 VNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSG-NKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKV 456 (1081)
T ss_pred ccccceeeeeecccccccCCHHHHhchHHhHHHhccc-chhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceE
Confidence 3455566666666666655543 45555566666665 45666666555566666665555 4555566 3455666666
Q ss_pred EECCCCcccc
Q 015983 132 AVETVTKFAK 141 (397)
Q Consensus 132 L~ls~n~~~~ 141 (397)
+|++.|+++.
T Consensus 457 lDlS~N~L~~ 466 (1081)
T KOG0618|consen 457 LDLSCNNLSE 466 (1081)
T ss_pred Eecccchhhh
Confidence 6666666554
No 12
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.85 E-value=4.4e-09 Score=113.72 Aligned_cols=75 Identities=24% Similarity=0.236 Sum_probs=33.8
Q ss_pred CCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCC
Q 015983 58 LLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVT 137 (397)
Q Consensus 58 L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n 137 (397)
|+.|+|++|.|+.+|... ++|+.|++++ |.+..+|..+ .+|+.|++++ +.+..+|..+..+.+|+.|++++|
T Consensus 384 L~~LdLs~N~Lt~LP~l~---s~L~~LdLS~-N~LssIP~l~---~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N 455 (788)
T PRK15387 384 LKELIVSGNRLTSLPVLP---SELKELMVSG-NRLTSLPMLP---SGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGN 455 (788)
T ss_pred cceEEecCCcccCCCCcc---cCCCEEEccC-CcCCCCCcch---hhhhhhhhcc-CcccccChHHhhccCCCeEECCCC
Confidence 444444444444444321 2344444444 3344444321 2344455544 344455555555555555555555
Q ss_pred ccc
Q 015983 138 KFA 140 (397)
Q Consensus 138 ~~~ 140 (397)
+++
T Consensus 456 ~Ls 458 (788)
T PRK15387 456 PLS 458 (788)
T ss_pred CCC
Confidence 544
No 13
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.80 E-value=1.3e-08 Score=110.20 Aligned_cols=79 Identities=25% Similarity=0.351 Sum_probs=44.3
Q ss_pred CCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCC
Q 015983 57 QLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETV 136 (397)
Q Consensus 57 ~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~ 136 (397)
+|+.|+|++|.++.+|..+. ++|+.|++++ |.+..+|..+ .++|+.|++++| .+..+|..+. ++|+.|++++
T Consensus 284 sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~~l--~~sL~~L~Ls~N-~Lt~LP~~l~--~sL~~L~Ls~ 355 (754)
T PRK15370 284 ELRYLSVYDNSIRTLPAHLP--SGITHLNVQS-NSLTALPETL--PPGLKTLEAGEN-ALTSLPASLP--PELQVLDVSK 355 (754)
T ss_pred CCcEEECCCCccccCcccch--hhHHHHHhcC-CccccCCccc--cccceeccccCC-ccccCChhhc--CcccEEECCC
Confidence 45555555555554443322 2344444444 3444444332 256778888774 5666776443 5788888888
Q ss_pred Ccccccc
Q 015983 137 TKFAKAE 143 (397)
Q Consensus 137 n~~~~L~ 143 (397)
|+++.++
T Consensus 356 N~L~~LP 362 (754)
T PRK15370 356 NQITVLP 362 (754)
T ss_pred CCCCcCC
Confidence 8776544
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.73 E-value=2.7e-08 Score=107.63 Aligned_cols=127 Identities=21% Similarity=0.291 Sum_probs=66.9
Q ss_pred CCcEEeccCCCCCccCCCc----ceEEeecCCccccchhhhhhhccc------cccCccCCCCCCCCEEEeeCCCCCcCC
Q 015983 3 SLKTLVLSGCLKLKKFPDI----VQVLWDGTDIRELSFAIELLFRLV------QEFPEKTSSKDQLLEIHLEGTAIRGLP 72 (397)
Q Consensus 3 sL~~L~LsgC~~L~~lP~~----~~L~Ls~n~l~~Lp~si~~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~~lP 72 (397)
+|+.|+|++| .++.+|.. ..|+|++|.|+.+|..+.+|+.|. ..+|.. +++|+.|+|++|.|+.+|
T Consensus 223 ~L~~L~L~~N-~Lt~LP~lp~~Lk~LdLs~N~LtsLP~lp~sL~~L~Ls~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP 298 (788)
T PRK15387 223 HITTLVIPDN-NLTSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPAL---PSGLCKLWIFGNQLTSLP 298 (788)
T ss_pred CCCEEEccCC-cCCCCCCCCCCCcEEEecCCccCcccCcccccceeeccCCchhhhhhc---hhhcCEEECcCCcccccc
Confidence 3455555554 34444432 226666666666554444444432 223321 234556666666666666
Q ss_pred ccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccc
Q 015983 73 ASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAEL 144 (397)
Q Consensus 73 ~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~ 144 (397)
.. +++|+.|+|++ |.+..+|..+ .+|+.|++++ +.+..+|..+ .+|+.|++++|+++.++.
T Consensus 299 ~~---p~~L~~LdLS~-N~L~~Lp~lp---~~L~~L~Ls~-N~L~~LP~lp---~~Lq~LdLS~N~Ls~LP~ 359 (788)
T PRK15387 299 VL---PPGLQELSVSD-NQLASLPALP---SELCKLWAYN-NQLTSLPTLP---SGLQELSVSDNQLASLPT 359 (788)
T ss_pred cc---ccccceeECCC-CccccCCCCc---cccccccccc-Cccccccccc---cccceEecCCCccCCCCC
Confidence 42 34566777766 4666665532 3455555655 3455555432 346667777776665543
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.73 E-value=1.1e-08 Score=110.82 Aligned_cols=130 Identities=18% Similarity=0.299 Sum_probs=79.4
Q ss_pred CCcEEeccCCCCCccCCC-----cceEEeecCCccccchhhh-hhhccc------cccCccCCCCCCCCEEEeeCCCCCc
Q 015983 3 SLKTLVLSGCLKLKKFPD-----IVQVLWDGTDIRELSFAIE-LLFRLV------QEFPEKTSSKDQLLEIHLEGTAIRG 70 (397)
Q Consensus 3 sL~~L~LsgC~~L~~lP~-----~~~L~Ls~n~l~~Lp~si~-~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~~ 70 (397)
+|+.|+|++| .+..+|. +..|+|++|.|+.+|..+. +|..|. ..+|..+. .+|+.|+|++|.++.
T Consensus 242 ~L~~L~Ls~N-~L~~LP~~l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~ 318 (754)
T PRK15370 242 TIQEMELSIN-RITELPERLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLTA 318 (754)
T ss_pred cccEEECcCC-ccCcCChhHhCCCCEEECcCCccCccccccCCCCcEEECCCCccccCcccch--hhHHHHHhcCCcccc
Confidence 5777788777 4556663 2237777777777776553 343332 33443322 356777777777777
Q ss_pred CCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983 71 LPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 71 lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
+|..+. ++|+.|++++ +.+..+|..+ .++|+.|++++| .+..+|..+. +.|+.|++++|+++.++
T Consensus 319 LP~~l~--~sL~~L~Ls~-N~Lt~LP~~l--~~sL~~L~Ls~N-~L~~LP~~lp--~~L~~LdLs~N~Lt~LP 383 (754)
T PRK15370 319 LPETLP--PGLKTLEAGE-NALTSLPASL--PPELQVLDVSKN-QITVLPETLP--PTITTLDVSRNALTNLP 383 (754)
T ss_pred CCcccc--ccceeccccC-CccccCChhh--cCcccEEECCCC-CCCcCChhhc--CCcCEEECCCCcCCCCC
Confidence 765543 4677777776 4566677654 257777777774 5666665442 46777777777665543
No 16
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.71 E-value=3.3e-09 Score=108.31 Aligned_cols=116 Identities=26% Similarity=0.303 Sum_probs=67.2
Q ss_pred EEeecCCccccch-hhhhhhccc----------cccCccCCCCCCCCEEEeeCCCCCcCCc-cccCCCCCCEEEecCCCC
Q 015983 24 VLWDGTDIRELSF-AIELLFRLV----------QEFPEKTSSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDRKN 91 (397)
Q Consensus 24 L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~ 91 (397)
|+|+.|.++++.. ++.+|++|+ +.-++..+..+.|++|+|++|+|+++++ ++..|+.|+.|+|++ |.
T Consensus 274 l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~-Ns 352 (873)
T KOG4194|consen 274 LNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSH-NS 352 (873)
T ss_pred eecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccc-cc
Confidence 6666666666654 334555554 2234445556778888888888887764 366666666666666 45
Q ss_pred CCCCCh-h---------------------------ccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcccc
Q 015983 92 LKSLPS-T---------------------------INGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 92 l~~LP~-~---------------------------i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~ 141 (397)
+.+|-+ . +.+|++|+.|++.| +++++||. .+..++.|+.|++.+|.+.+
T Consensus 353 i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~NaiaS 430 (873)
T KOG4194|consen 353 IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGDNAIAS 430 (873)
T ss_pred hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCCCccee
Confidence 554432 2 33455555555555 35555553 45555566666666555443
No 17
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.71 E-value=9.5e-10 Score=111.93 Aligned_cols=182 Identities=20% Similarity=0.226 Sum_probs=116.4
Q ss_pred EEeccCCCCCccCCCcce---------EEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCCC
Q 015983 6 TLVLSGCLKLKKFPDIVQ---------VLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGTA 67 (397)
Q Consensus 6 ~L~LsgC~~L~~lP~~~~---------L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~~ 67 (397)
.|.|+| .+|+.||--.. .+|+.|.+.++|.....+..|. ..+|+.+.++..|++|||+.|.
T Consensus 54 ~l~Ls~-rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nq 132 (722)
T KOG0532|consen 54 RLLLSG-RRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQ 132 (722)
T ss_pred cccccc-chhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccch
Confidence 355666 57788874322 7888888888887765554443 6678878888888888888888
Q ss_pred CCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccc-cc
Q 015983 68 IRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAEL-IA 146 (397)
Q Consensus 68 i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~-l~ 146 (397)
++.+|..+..|+ |+.|-+++ |+++.+|..|+.+..|..|+.+. +.+.++|..++.+.+|+.|.+.-|++..++. +.
T Consensus 133 lS~lp~~lC~lp-Lkvli~sN-Nkl~~lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrRn~l~~lp~El~ 209 (722)
T KOG0532|consen 133 LSHLPDGLCDLP-LKVLIVSN-NKLTSLPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC 209 (722)
T ss_pred hhcCChhhhcCc-ceeEEEec-CccccCCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh
Confidence 888887777665 77777777 67888888777777777887776 4667777666666666666666665544321 11
Q ss_pred cCCC------CcccccCcCceeecc-------cccc--cccceeecCCC-CccccccccCCC
Q 015983 147 QKDS------DSWKKNVDKGIKLST-------TADY--LRDFSIVVPGS-EIPEWFEYQNNE 192 (397)
Q Consensus 147 ~l~~------~~~~~~~~~~~~l~~-------~~~~--~~~~~~~lPG~-~IP~Wf~~qs~~ 192 (397)
.|+- ..-...+|-+|.-.. +-+. .+..++|.-|. .|=+|++-|+ .
T Consensus 210 ~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA-~ 270 (722)
T KOG0532|consen 210 SLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQA-C 270 (722)
T ss_pred CCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeeeeeecchh-c
Confidence 1111 111123444441111 1111 23356788886 6778888887 5
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=98.69 E-value=2.1e-09 Score=114.53 Aligned_cols=89 Identities=26% Similarity=0.381 Sum_probs=69.5
Q ss_pred cccCcc-CCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCcc--CCcc
Q 015983 46 QEFPEK-TSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKN--APET 122 (397)
Q Consensus 46 ~~~P~~-l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~--lP~~ 122 (397)
..||.. +.+++.|++|+|+||.++.||..+.++..|++|...+ |.+..+| .+..++.|+.+|++. +.|.. +|..
T Consensus 396 ~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~-N~L~~~~l~~~ 472 (1081)
T KOG0618|consen 396 NSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSC-NNLSEVTLPEA 472 (1081)
T ss_pred ccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcC-Cceeech-hhhhcCcceEEeccc-chhhhhhhhhh
Confidence 345543 4677889999999999999999999999999998887 7888889 478889999999986 55554 3443
Q ss_pred cCCCCCCcEEECCCCc
Q 015983 123 LGKVESLESAVETVTK 138 (397)
Q Consensus 123 ~~~L~~L~~L~ls~n~ 138 (397)
... +.|++|+++||.
T Consensus 473 ~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 473 LPS-PNLKYLDLSGNT 487 (1081)
T ss_pred CCC-cccceeeccCCc
Confidence 332 688999999986
No 19
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.60 E-value=4.4e-08 Score=87.98 Aligned_cols=101 Identities=20% Similarity=0.257 Sum_probs=41.5
Q ss_pred EEeecCCccccchhhhhhhccccccCccCC-CCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhc-cC
Q 015983 24 VLWDGTDIRELSFAIELLFRLVQEFPEKTS-SKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTI-NG 101 (397)
Q Consensus 24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~-~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i-~~ 101 (397)
|+|++|.|+.+. . ++ .+.+|+.|+|++|.|+.++ .+..+++|+.|++++ |.+.+++..+ ..
T Consensus 24 L~L~~n~I~~Ie-~--------------L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~-N~I~~i~~~l~~~ 86 (175)
T PF14580_consen 24 LNLRGNQISTIE-N--------------LGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSN-NRISSISEGLDKN 86 (175)
T ss_dssp -------------S----------------TT-TT--EEE-TTS--S--T-T----TT--EEE--S-S---S-CHHHHHH
T ss_pred cccccccccccc-c--------------hhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCC-CCCCccccchHHh
Confidence 777777776542 1 23 4678899999999999886 577789999999998 7899887654 46
Q ss_pred CCcCceeeeecccCCccCCc--ccCCCCCCcEEECCCCccccc
Q 015983 102 LRCLRMLHLSGCSKLKNAPE--TLGKVESLESAVETVTKFAKA 142 (397)
Q Consensus 102 L~sL~~L~Ls~C~~L~~lP~--~~~~L~~L~~L~ls~n~~~~L 142 (397)
+++|+.|++++ +++..+-+ .+..++.|+.|++.+|++++.
T Consensus 87 lp~L~~L~L~~-N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~ 128 (175)
T PF14580_consen 87 LPNLQELYLSN-NKISDLNELEPLSSLPKLRVLSLEGNPVCEK 128 (175)
T ss_dssp -TT--EEE-TT-S---SCCCCGGGGG-TT--EEE-TT-GGGGS
T ss_pred CCcCCEEECcC-CcCCChHHhHHHHcCCCcceeeccCCcccch
Confidence 89999999988 56666543 356788899999999988753
No 20
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.55 E-value=8e-09 Score=98.25 Aligned_cols=124 Identities=23% Similarity=0.263 Sum_probs=82.8
Q ss_pred CCcEEeccCCC------CCccCCCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcccc
Q 015983 3 SLKTLVLSGCL------KLKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIE 76 (397)
Q Consensus 3 sL~~L~LsgC~------~L~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~ 76 (397)
.|+.||||+|. ..+-+|.+..|+++.|.|..+.. +..+.+|+.|||++|.++++-..=-
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n---------------La~L~~L~~LDLS~N~Ls~~~Gwh~ 349 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN---------------LAELPQLQLLDLSGNLLAECVGWHL 349 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeehh---------------hhhcccceEeecccchhHhhhhhHh
Confidence 46677777762 12335555557777777766532 2456677888888887776665555
Q ss_pred CCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCC--cccCCCCCCcEEECCCCccccccc
Q 015983 77 LLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAP--ETLGKVESLESAVETVTKFAKAEL 144 (397)
Q Consensus 77 ~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP--~~~~~L~~L~~L~ls~n~~~~L~~ 144 (397)
.|.+.+.|.|++ |.+.++.. +++|-+|..||+++ ++++.+- ..+|+|++|+.+.+.+|++..+..
T Consensus 350 KLGNIKtL~La~-N~iE~LSG-L~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 350 KLGNIKTLKLAQ-NKIETLSG-LRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhcCEeeeehhh-hhHhhhhh-hHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 666777788877 56766644 66777888888888 4565553 357788888888888887765443
No 21
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=98.52 E-value=8e-08 Score=98.40 Aligned_cols=115 Identities=17% Similarity=0.140 Sum_probs=48.4
Q ss_pred EEeecCCccccchhhh-hhhccc------cccC----ccCCCCCCCCEEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCC
Q 015983 24 VLWDGTDIRELSFAIE-LLFRLV------QEFP----EKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKN 91 (397)
Q Consensus 24 L~Ls~n~l~~Lp~si~-~L~~L~------~~~P----~~l~~l~~L~~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~ 91 (397)
|.|+.|.|+.||.-+. +|.+|+ ..+- -.+..+++|+.|.|..|.|..+-.+ |..|.+++.|+|.. |+
T Consensus 202 lkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~-N~ 280 (873)
T KOG4194|consen 202 LKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLET-NR 280 (873)
T ss_pred eecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeeccc-ch
Confidence 5666677777765433 355543 0000 0123334444444444444444332 33344444444444 34
Q ss_pred CCCCCh-hccCCCcCceeeeecccCCccC-CcccCCCCCCcEEECCCCccc
Q 015983 92 LKSLPS-TINGLRCLRMLHLSGCSKLKNA-PETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 92 l~~LP~-~i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~~L~ls~n~~~ 140 (397)
+..+-+ ++.+|++|+.|+|++| .+..+ ++...-.++|+.|+++.|.++
T Consensus 281 l~~vn~g~lfgLt~L~~L~lS~N-aI~rih~d~WsftqkL~~LdLs~N~i~ 330 (873)
T KOG4194|consen 281 LQAVNEGWLFGLTSLEQLDLSYN-AIQRIHIDSWSFTQKLKELDLSSNRIT 330 (873)
T ss_pred hhhhhcccccccchhhhhccchh-hhheeecchhhhcccceeEeccccccc
Confidence 443322 3344444444444442 22222 222333344444444444443
No 22
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.46 E-value=2e-08 Score=102.44 Aligned_cols=129 Identities=24% Similarity=0.314 Sum_probs=72.2
Q ss_pred EeccCCCCCccCCCcce-------EEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCCCCCc
Q 015983 7 LVLSGCLKLKKFPDIVQ-------VLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGTAIRG 70 (397)
Q Consensus 7 L~LsgC~~L~~lP~~~~-------L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~~i~~ 70 (397)
.+|+.| ++.++|.-.. |.|..|.+..+|..+.+|..|. ..+|..++.++ |+.|-+++|+++.
T Consensus 80 aDlsrN-R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~ 157 (722)
T KOG0532|consen 80 ADLSRN-RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTS 157 (722)
T ss_pred hhcccc-ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCcccc
Confidence 456664 4556664332 5556666666666666655543 44555555554 6666666666666
Q ss_pred CCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccc
Q 015983 71 LPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 71 lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~ 140 (397)
+|..|+.+..|..|+.+. +.+.++|..+++|.+|+.|.+.. +.+..+|+.+..|+ |..||+++|++.
T Consensus 158 lp~~ig~~~tl~~ld~s~-nei~slpsql~~l~slr~l~vrR-n~l~~lp~El~~Lp-Li~lDfScNkis 224 (722)
T KOG0532|consen 158 LPEEIGLLPTLAHLDVSK-NEIQSLPSQLGYLTSLRDLNVRR-NHLEDLPEELCSLP-LIRLDFSCNKIS 224 (722)
T ss_pred CCcccccchhHHHhhhhh-hhhhhchHHhhhHHHHHHHHHhh-hhhhhCCHHHhCCc-eeeeecccCcee
Confidence 666666666666666665 45666666666665555555554 34444444444332 444444444443
No 23
>PLN03150 hypothetical protein; Provisional
Probab=98.44 E-value=4.5e-07 Score=97.08 Aligned_cols=83 Identities=23% Similarity=0.299 Sum_probs=51.4
Q ss_pred CCEEEeeCCCCC-cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCC
Q 015983 58 LLEIHLEGTAIR-GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETV 136 (397)
Q Consensus 58 L~~L~Ls~~~i~-~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~ 136 (397)
++.|+|++|.++ .+|..++.|++|+.|+|++|+....+|..++.+++|+.|+|++|...+.+|..++++++|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 556666666665 5566666666666666666433335666666666666666666554456666666666666666666
Q ss_pred Cccc
Q 015983 137 TKFA 140 (397)
Q Consensus 137 n~~~ 140 (397)
|.++
T Consensus 500 N~l~ 503 (623)
T PLN03150 500 NSLS 503 (623)
T ss_pred Cccc
Confidence 6554
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.27 E-value=6e-07 Score=90.45 Aligned_cols=116 Identities=22% Similarity=0.290 Sum_probs=76.8
Q ss_pred eEEeecCCccccchhhhhhh-ccc---------cccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCC
Q 015983 23 QVLWDGTDIRELSFAIELLF-RLV---------QEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNL 92 (397)
Q Consensus 23 ~L~Ls~n~l~~Lp~si~~L~-~L~---------~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l 92 (397)
.|++.+|.++++|..+..++ .|. ..+|..++.+++|+.|++++|.++++|...+.++.|+.|++++ +.+
T Consensus 120 ~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~-N~i 198 (394)
T COG4886 120 SLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG-NKI 198 (394)
T ss_pred EEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC-Ccc
Confidence 36777777777766554432 332 4454556777888888888888888887777777888888887 678
Q ss_pred CCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccc
Q 015983 93 KSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 93 ~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~ 140 (397)
..+|..+..+..|+.|.++++ .+..++..+..+..+..+.+.+|.+.
T Consensus 199 ~~l~~~~~~~~~L~~l~~~~N-~~~~~~~~~~~~~~l~~l~l~~n~~~ 245 (394)
T COG4886 199 SDLPPEIELLSALEELDLSNN-SIIELLSSLSNLKNLSGLELSNNKLE 245 (394)
T ss_pred ccCchhhhhhhhhhhhhhcCC-cceecchhhhhcccccccccCCceee
Confidence 888776666666777777774 24444444555555555555555443
No 25
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.22 E-value=9.5e-07 Score=65.03 Aligned_cols=57 Identities=30% Similarity=0.451 Sum_probs=41.0
Q ss_pred CCCCEEEeeCCCCCcCCc-cccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecc
Q 015983 56 DQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGC 113 (397)
Q Consensus 56 ~~L~~L~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C 113 (397)
++|++|+|++|.|+.+|. .+..+++|+.|++++ +.+..+|. .+.++++|++|++++|
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCC
Confidence 357777888777777774 467777777777776 56666653 6677777777777775
No 26
>PLN03150 hypothetical protein; Provisional
Probab=98.18 E-value=2.4e-06 Score=91.58 Aligned_cols=91 Identities=29% Similarity=0.365 Sum_probs=69.0
Q ss_pred ccCccCCCCCCCCEEEeeCCCCC-cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCC
Q 015983 47 EFPEKTSSKDQLLEIHLEGTAIR-GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGK 125 (397)
Q Consensus 47 ~~P~~l~~l~~L~~L~Ls~~~i~-~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~ 125 (397)
.+|..++.|++|+.|+|++|.++ .+|..++.+++|+.|+|++|+....+|..+++|++|+.|+|++|...+.+|..++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 44555577888889999988887 78888888889999999885444578888888889999999887766788876654
Q ss_pred C-CCCcEEECCCC
Q 015983 126 V-ESLESAVETVT 137 (397)
Q Consensus 126 L-~~L~~L~ls~n 137 (397)
+ ..+..+++.+|
T Consensus 513 ~~~~~~~l~~~~N 525 (623)
T PLN03150 513 RLLHRASFNFTDN 525 (623)
T ss_pred ccccCceEEecCC
Confidence 3 34455666655
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.18 E-value=9e-07 Score=89.18 Aligned_cols=140 Identities=26% Similarity=0.410 Sum_probs=102.7
Q ss_pred CCcEEeccCCCCCccCCC--------cceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983 3 SLKTLVLSGCLKLKKFPD--------IVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG 65 (397)
Q Consensus 3 sL~~L~LsgC~~L~~lP~--------~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~ 65 (397)
.++.|++.++ .+..+|. +..|+++.|.+..+|..++.++.|. ..+|...+.+++|+.|++++
T Consensus 117 ~l~~L~l~~n-~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~ 195 (394)
T COG4886 117 NLTSLDLDNN-NITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG 195 (394)
T ss_pred ceeEEecCCc-ccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence 4667777775 3333332 2337778888888876676666665 45555555778899999999
Q ss_pred CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccccc
Q 015983 66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELI 145 (397)
Q Consensus 66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l 145 (397)
|.++.+|..+..+..|+.|.+++ +.+..++..+..+..+..|.+.+ +.+..++..++.+.+|+.|++++|.++.+..+
T Consensus 196 N~i~~l~~~~~~~~~L~~l~~~~-N~~~~~~~~~~~~~~l~~l~l~~-n~~~~~~~~~~~l~~l~~L~~s~n~i~~i~~~ 273 (394)
T COG4886 196 NKISDLPPEIELLSALEELDLSN-NSIIELLSSLSNLKNLSGLELSN-NKLEDLPESIGNLSNLETLDLSNNQISSISSL 273 (394)
T ss_pred CccccCchhhhhhhhhhhhhhcC-CcceecchhhhhcccccccccCC-ceeeeccchhccccccceeccccccccccccc
Confidence 99999998887778899999987 44666777788888888888766 56777677788888888888888887776543
No 28
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.16 E-value=4.9e-06 Score=83.78 Aligned_cols=56 Identities=21% Similarity=0.475 Sum_probs=33.7
Q ss_pred CCCcEEeccCCCCCccCCCcc----eEEeec-CCccccchhhhhhhccccccCccCCCCCCCCEEEeeCC-CCCcCCcc
Q 015983 2 KSLKTLVLSGCLKLKKFPDIV----QVLWDG-TDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGT-AIRGLPAS 74 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP~~~----~L~Ls~-n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~-~i~~lP~s 74 (397)
.+|+.|++++| .++.+|.+- .|.+++ +.++.+|..+ | .+|++|++++| .+..+|.+
T Consensus 52 ~~l~~L~Is~c-~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L----------P------~nLe~L~Ls~Cs~L~sLP~s 113 (426)
T PRK15386 52 RASGRLYIKDC-DIESLPVLPNELTEITIENCNNLTTLPGSI----------P------EGLEKLTVCHCPEISGLPES 113 (426)
T ss_pred cCCCEEEeCCC-CCcccCCCCCCCcEEEccCCCCcccCCchh----------h------hhhhheEccCcccccccccc
Confidence 56788888888 677777432 266665 4455555332 1 35666666666 56666653
No 29
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.13 E-value=8.9e-07 Score=97.64 Aligned_cols=96 Identities=27% Similarity=0.397 Sum_probs=61.4
Q ss_pred CCcEEeccCCCC---------CccCCCcceEEeecC-CccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCC
Q 015983 3 SLKTLVLSGCLK---------LKKFPDIVQVLWDGT-DIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLP 72 (397)
Q Consensus 3 sL~~L~LsgC~~---------L~~lP~~~~L~Ls~n-~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP 72 (397)
.|++|-+.++.. +..+|.+..|||++| .+.+||.+| +.+-+|++|+|+++.|+.+|
T Consensus 546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I--------------~~Li~LryL~L~~t~I~~LP 611 (889)
T KOG4658|consen 546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI--------------GELVHLRYLDLSDTGISHLP 611 (889)
T ss_pred ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH--------------hhhhhhhcccccCCCccccc
Confidence 355666666532 334444444666653 345555555 34556777777777777777
Q ss_pred ccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeec
Q 015983 73 ASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSG 112 (397)
Q Consensus 73 ~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~ 112 (397)
.++++|++|.+|++.....+..+|..+..|++|++|.+..
T Consensus 612 ~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~ 651 (889)
T KOG4658|consen 612 SGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPR 651 (889)
T ss_pred hHHHHHHhhheeccccccccccccchhhhcccccEEEeec
Confidence 7777777777777777666666666666677777777765
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.10 E-value=1.7e-06 Score=77.77 Aligned_cols=89 Identities=21% Similarity=0.359 Sum_probs=32.5
Q ss_pred CCCCCCEEEeeCCCCCcCCcccc-CCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCccc-CCCCCCcE
Q 015983 54 SKDQLLEIHLEGTAIRGLPASIE-LLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETL-GKVESLES 131 (397)
Q Consensus 54 ~l~~L~~L~Ls~~~i~~lP~si~-~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~-~~L~~L~~ 131 (397)
+...+++|+|++|.|+.+. .++ .+.+|+.|+|++ |.+..++. +..++.|+.|++++ +.+..+++.+ ..+++|+.
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~-N~I~~l~~-l~~L~~L~~L~L~~-N~I~~i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSN-NQITKLEG-LPGLPRLKTLDLSN-NRISSISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TT-S--S--TT-----TT--EEE--S-S---S-CHHHHHH-TT--E
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCC-CCCccccC-ccChhhhhhcccCC-CCCCccccchHHhCCcCCE
Confidence 3346899999999999875 455 588999999999 78999875 77899999999999 6888887544 46899999
Q ss_pred EECCCCccccccccc
Q 015983 132 AVETVTKFAKAELIA 146 (397)
Q Consensus 132 L~ls~n~~~~L~~l~ 146 (397)
|++++|++..+..+.
T Consensus 93 L~L~~N~I~~l~~l~ 107 (175)
T PF14580_consen 93 LYLSNNKISDLNELE 107 (175)
T ss_dssp EE-TTS---SCCCCG
T ss_pred EECcCCcCCChHHhH
Confidence 999999988765543
No 31
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.10 E-value=2e-06 Score=83.40 Aligned_cols=84 Identities=19% Similarity=0.193 Sum_probs=39.1
Q ss_pred CCCCEEEeeCCCCC-----cCCccccCCCCCCEEEecCCCCCC-----CCChhccCCCcCceeeeecccCC----ccCCc
Q 015983 56 DQLLEIHLEGTAIR-----GLPASIELLSGNVLLNLKDRKNLK-----SLPSTINGLRCLRMLHLSGCSKL----KNAPE 121 (397)
Q Consensus 56 ~~L~~L~Ls~~~i~-----~lP~si~~L~~L~~L~Ls~c~~l~-----~LP~~i~~L~sL~~L~Ls~C~~L----~~lP~ 121 (397)
++|+.|+|++|.++ .++..+..+.+|+.|++++| .+. .++..+..+++|++|++++|..- ..++.
T Consensus 137 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~ 215 (319)
T cd00116 137 PALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAE 215 (319)
T ss_pred CCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHH
Confidence 45555555555555 22333444455555555553 333 12333333445555555554211 11223
Q ss_pred ccCCCCCCcEEECCCCccc
Q 015983 122 TLGKVESLESAVETVTKFA 140 (397)
Q Consensus 122 ~~~~L~~L~~L~ls~n~~~ 140 (397)
.+..+++|+.|++++|.++
T Consensus 216 ~~~~~~~L~~L~ls~n~l~ 234 (319)
T cd00116 216 TLASLKSLEVLNLGDNNLT 234 (319)
T ss_pred HhcccCCCCEEecCCCcCc
Confidence 3444555555555555543
No 32
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.10 E-value=1.5e-06 Score=84.33 Aligned_cols=137 Identities=18% Similarity=0.243 Sum_probs=82.9
Q ss_pred CCCcEEeccCCCCCc-------cCCC---cceEEeecCCccc-----cchhhhhh-hccc--------------cccCcc
Q 015983 2 KSLKTLVLSGCLKLK-------KFPD---IVQVLWDGTDIRE-----LSFAIELL-FRLV--------------QEFPEK 51 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~-------~lP~---~~~L~Ls~n~l~~-----Lp~si~~L-~~L~--------------~~~P~~ 51 (397)
++|+.|+|++|..-. .++. +..|++++|.+.. +...+..+ .+|+ ..++..
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~ 160 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKA 160 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHH
Confidence 467777777764321 1222 4557777766652 22233333 2222 123334
Q ss_pred CCCCCCCCEEEeeCCCCC-----cCCccccCCCCCCEEEecCCCCCC-----CCChhccCCCcCceeeeecccCCcc---
Q 015983 52 TSSKDQLLEIHLEGTAIR-----GLPASIELLSGNVLLNLKDRKNLK-----SLPSTINGLRCLRMLHLSGCSKLKN--- 118 (397)
Q Consensus 52 l~~l~~L~~L~Ls~~~i~-----~lP~si~~L~~L~~L~Ls~c~~l~-----~LP~~i~~L~sL~~L~Ls~C~~L~~--- 118 (397)
+..+++|++|+|++|.++ .++..+..+++|+.|+|++| .+. .++..+..+++|++|++++|. +..
T Consensus 161 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~ 238 (319)
T cd00116 161 LRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGA 238 (319)
T ss_pred HHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHH
Confidence 456678999999999887 34445566678999999985 443 244556677889999999864 332
Q ss_pred --CCcc-cCCCCCCcEEECCCCccc
Q 015983 119 --APET-LGKVESLESAVETVTKFA 140 (397)
Q Consensus 119 --lP~~-~~~L~~L~~L~ls~n~~~ 140 (397)
+... ....+.|+.|++++|.++
T Consensus 239 ~~l~~~~~~~~~~L~~L~l~~n~i~ 263 (319)
T cd00116 239 AALASALLSPNISLLTLSLSCNDIT 263 (319)
T ss_pred HHHHHHHhccCCCceEEEccCCCCC
Confidence 1111 112467889999988875
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.04 E-value=1.3e-06 Score=83.35 Aligned_cols=88 Identities=20% Similarity=0.272 Sum_probs=67.5
Q ss_pred CCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcE
Q 015983 52 TSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLES 131 (397)
Q Consensus 52 l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~ 131 (397)
+..+..|++|||++|.|+++..++.-+++++.|++++ |.+..+-. +..|++|+.|||++ +.+..+-.+-..|.+.+.
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~-N~i~~v~n-La~L~~L~~LDLS~-N~Ls~~~Gwh~KLGNIKt 356 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQ-NRIRTVQN-LAELPQLQLLDLSG-NLLAECVGWHLKLGNIKT 356 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccc-cceeeehh-hhhcccceEeeccc-chhHhhhhhHhhhcCEee
Confidence 3446779999999999999999999999999999998 67777755 77889999999999 566665554444555566
Q ss_pred EECCCCccccc
Q 015983 132 AVETVTKFAKA 142 (397)
Q Consensus 132 L~ls~n~~~~L 142 (397)
|.+++|.+..|
T Consensus 357 L~La~N~iE~L 367 (490)
T KOG1259|consen 357 LKLAQNKIETL 367 (490)
T ss_pred eehhhhhHhhh
Confidence 66666655443
No 34
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=98.03 E-value=3.6e-07 Score=89.87 Aligned_cols=104 Identities=19% Similarity=0.248 Sum_probs=69.5
Q ss_pred EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCCCh-hccC
Q 015983 24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSLPS-TING 101 (397)
Q Consensus 24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~ 101 (397)
++|+.|.|+.||+.. ++.+++|++|||+.|+|+.+ |..|..|.+|..|-+.++|+++.+|. .+++
T Consensus 72 irLdqN~I~~iP~~a-------------F~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g 138 (498)
T KOG4237|consen 72 IRLDQNQISSIPPGA-------------FKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG 138 (498)
T ss_pred EEeccCCcccCChhh-------------ccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh
Confidence 777777777777643 35667777788887777766 45577777777777766677777776 5677
Q ss_pred CCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCcccc
Q 015983 102 LRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 102 L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~~ 141 (397)
|.+|+.|.+.-| .+..++ +.+..|++|..|.+..|.+..
T Consensus 139 L~slqrLllNan-~i~Cir~~al~dL~~l~lLslyDn~~q~ 178 (498)
T KOG4237|consen 139 LSSLQRLLLNAN-HINCIRQDALRDLPSLSLLSLYDNKIQS 178 (498)
T ss_pred HHHHHHHhcChh-hhcchhHHHHHHhhhcchhcccchhhhh
Confidence 777777766653 333333 445666666666666665543
No 35
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=97.99 E-value=1.8e-06 Score=85.09 Aligned_cols=66 Identities=17% Similarity=0.214 Sum_probs=54.4
Q ss_pred ccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCccccc
Q 015983 75 IELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAKA 142 (397)
Q Consensus 75 i~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L 142 (397)
|+.|++|+.|+|++ |.++.+ +..+.++.+|+.|.|.. ++++.+.. .+..+..|++|++.+|+++.+
T Consensus 270 f~~L~~L~~lnlsn-N~i~~i~~~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~ 337 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSN-NKITRIEDGAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTV 337 (498)
T ss_pred HhhcccceEeccCC-CccchhhhhhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecCCeeEEE
Confidence 57899999999998 788887 56888999999999998 57777653 577888899999999987753
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=1.1e-06 Score=87.49 Aligned_cols=88 Identities=20% Similarity=0.180 Sum_probs=45.2
Q ss_pred CCCCCCEEEeeCC-CCCcCCccccCCCCCCEEEecCCCCCCCCC--hhccCCCcCceeeeecccCCccC--Ccc-----c
Q 015983 54 SKDQLLEIHLEGT-AIRGLPASIELLSGNVLLNLKDRKNLKSLP--STINGLRCLRMLHLSGCSKLKNA--PET-----L 123 (397)
Q Consensus 54 ~l~~L~~L~Ls~~-~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP--~~i~~L~sL~~L~Ls~C~~L~~l--P~~-----~ 123 (397)
.+++|+.|+|.+| .+..--.+...+..|+.|+|++ |++...+ ...+.++.|..|+++.| .+.++ |+. .
T Consensus 220 ~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~-N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 220 TFPSLEVLYLEANEIILIKATSTKILQTLQELDLSN-NNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKT 297 (505)
T ss_pred hCCcHHHhhhhcccccceecchhhhhhHHhhccccC-Ccccccccccccccccchhhhhcccc-CcchhcCCCccchhhh
Confidence 3445555666555 2221112233445666666666 4455554 23556666666666663 34333 221 2
Q ss_pred CCCCCCcEEECCCCcccccc
Q 015983 124 GKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 124 ~~L~~L~~L~ls~n~~~~L~ 143 (397)
..+++|++|++..|++.+.+
T Consensus 298 ~~f~kL~~L~i~~N~I~~w~ 317 (505)
T KOG3207|consen 298 HTFPKLEYLNISENNIRDWR 317 (505)
T ss_pred cccccceeeecccCcccccc
Confidence 34566667777666665433
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=97.96 E-value=5e-06 Score=91.79 Aligned_cols=86 Identities=28% Similarity=0.340 Sum_probs=77.2
Q ss_pred CCCCCCCCEEEeeCC-CCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCc
Q 015983 52 TSSKDQLLEIHLEGT-AIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLE 130 (397)
Q Consensus 52 l~~l~~L~~L~Ls~~-~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~ 130 (397)
+..|+.|+.|||++| .+.++|.+|+.|-+|++|+|++ ..+..+|..+++|..|.+|++..+..+..+|.....|.+|+
T Consensus 567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr 645 (889)
T KOG4658|consen 567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR 645 (889)
T ss_pred HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCccccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence 567999999999987 7889999999999999999998 78999999999999999999999888888888777799999
Q ss_pred EEECCCCc
Q 015983 131 SAVETVTK 138 (397)
Q Consensus 131 ~L~ls~n~ 138 (397)
+|.+....
T Consensus 646 ~L~l~~s~ 653 (889)
T KOG4658|consen 646 VLRLPRSA 653 (889)
T ss_pred EEEeeccc
Confidence 98875543
No 38
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.93 E-value=9.3e-06 Score=59.68 Aligned_cols=59 Identities=20% Similarity=0.359 Sum_probs=51.0
Q ss_pred CCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCcc
Q 015983 79 SGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKF 139 (397)
Q Consensus 79 ~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~ 139 (397)
++|+.|++++ +.+..+|. .+.++++|++|++++ +.++.+| ..+..+++|+.|++++|++
T Consensus 1 p~L~~L~l~~-n~l~~i~~~~f~~l~~L~~L~l~~-N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSN-NKLTEIPPDSFSNLPNLETLDLSN-NNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETS-STESEECTTTTTTGTTESEEEETS-SSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCC-CCCCccCHHHHcCCCCCCEeEccC-CccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4789999999 58999985 788999999999998 5677775 5789999999999999964
No 39
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.83 E-value=1.9e-05 Score=54.38 Aligned_cols=41 Identities=24% Similarity=0.405 Sum_probs=31.6
Q ss_pred CCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCCh
Q 015983 56 DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPS 97 (397)
Q Consensus 56 ~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~ 97 (397)
++|++|+|++|.|+.+|..+++|++|+.|++++ +.+..+|.
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~-N~i~~i~~ 41 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSN-NPISDISP 41 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETS-SCCSBEGG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecC-CCCCCCcC
Confidence 468888888888888888888888888888888 46776654
No 40
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=97.45 E-value=3.1e-05 Score=77.37 Aligned_cols=136 Identities=20% Similarity=0.264 Sum_probs=85.0
Q ss_pred CCCCcEEeccCCCCCcc---------CCCcceEEeecCCccc--cc---hhhhhhhccc---------cccCccCCCCCC
Q 015983 1 MKSLKTLVLSGCLKLKK---------FPDIVQVLWDGTDIRE--LS---FAIELLFRLV---------QEFPEKTSSKDQ 57 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~---------lP~~~~L~Ls~n~l~~--Lp---~si~~L~~L~---------~~~P~~l~~l~~ 57 (397)
|++|+.|+|+.|. +.. ++.+..|.|++|.++. +- ..+.++..|. ...+. ..+..
T Consensus 171 Lp~Le~LNls~Nr-l~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~ 247 (505)
T KOG3207|consen 171 LPSLENLNLSSNR-LSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQT 247 (505)
T ss_pred cccchhccccccc-ccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhH
Confidence 5778888888763 322 2223337777776652 11 1111222221 11111 23567
Q ss_pred CCEEEeeCCCCCcCC--ccccCCCCCCEEEecCCCCCCCC--Chh-----ccCCCcCceeeeecccCCccCCc--ccCCC
Q 015983 58 LLEIHLEGTAIRGLP--ASIELLSGNVLLNLKDRKNLKSL--PST-----INGLRCLRMLHLSGCSKLKNAPE--TLGKV 126 (397)
Q Consensus 58 L~~L~Ls~~~i~~lP--~si~~L~~L~~L~Ls~c~~l~~L--P~~-----i~~L~sL~~L~Ls~C~~L~~lP~--~~~~L 126 (397)
|++|+|++|++...+ .-++.|+.|..|+++. +.+.++ |+. ...+++|++|+++.| ++...+. .+..+
T Consensus 248 L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~-tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l 325 (505)
T KOG3207|consen 248 LQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS-TGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTL 325 (505)
T ss_pred HhhccccCCcccccccccccccccchhhhhccc-cCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhcc
Confidence 999999999998887 4588999999999998 466664 443 346789999999995 5544443 24456
Q ss_pred CCCcEEECCCCcccc
Q 015983 127 ESLESAVETVTKFAK 141 (397)
Q Consensus 127 ~~L~~L~ls~n~~~~ 141 (397)
++|+.|.+..|.+..
T Consensus 326 ~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 326 ENLKHLRITLNYLNK 340 (505)
T ss_pred chhhhhhcccccccc
Confidence 667777777776653
No 41
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.44 E-value=1.4e-05 Score=68.49 Aligned_cols=107 Identities=17% Similarity=0.284 Sum_probs=73.4
Q ss_pred EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccC-CCCCCEEEecCCCCCCCCChhccCC
Q 015983 24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIEL-LSGNVLLNLKDRKNLKSLPSTINGL 102 (397)
Q Consensus 24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~-L~~L~~L~Ls~c~~l~~LP~~i~~L 102 (397)
++|+++.+-.++.....+. ....|+..+|++|.++.+|..+.. .+.++.|+|++ |.+..+|..+..+
T Consensus 32 ldLssc~lm~i~davy~l~-----------~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~-neisdvPeE~Aam 99 (177)
T KOG4579|consen 32 LDLSSCQLMYIADAVYMLS-----------KGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLAN-NEISDVPEELAAM 99 (177)
T ss_pred cccccchhhHHHHHHHHHh-----------CCceEEEEecccchhhhCCHHHhhccchhhhhhcch-hhhhhchHHHhhh
Confidence 5566666665655544332 234567778888888888877653 34778888887 6788888878888
Q ss_pred CcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983 103 RCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 103 ~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
+.|+.|+++. +.+...|..+..|.+|..|+..+|....++
T Consensus 100 ~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 100 PALRSLNLRF-NPLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred HHhhhccccc-CccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 8888888887 466666766666777777777777655443
No 42
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.42 E-value=0.00021 Score=72.21 Aligned_cols=79 Identities=19% Similarity=0.298 Sum_probs=62.3
Q ss_pred CCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEE
Q 015983 54 SKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAV 133 (397)
Q Consensus 54 ~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ 133 (397)
.+.++..|++++|.|+.+|. ...+|+.|.+++|+++..+|..+ ..+|++|++++|..+..+|.. |+.|+
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~s------Le~L~ 118 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPES------VRSLE 118 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccccc------cceEE
Confidence 35789999999999999982 34579999999999999999865 478999999999888888753 55666
Q ss_pred CCCCcccccc
Q 015983 134 ETVTKFAKAE 143 (397)
Q Consensus 134 ls~n~~~~L~ 143 (397)
+.++.+..++
T Consensus 119 L~~n~~~~L~ 128 (426)
T PRK15386 119 IKGSATDSIK 128 (426)
T ss_pred eCCCCCcccc
Confidence 6666544433
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.41 E-value=8.6e-06 Score=85.68 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=55.4
Q ss_pred CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChh-ccCCCcCceeeeecccCCccCCcccCCCCCCcE
Q 015983 53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPST-INGLRCLRMLHLSGCSKLKNAPETLGKVESLES 131 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~-i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~ 131 (397)
.-++.|+.|+|+.|.++.+. .+..|.+|+.|||++ |.+..+|.. ..+. .|..|++++ |.++++-. +.+|++|+.
T Consensus 184 qll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsy-N~L~~vp~l~~~gc-~L~~L~lrn-N~l~tL~g-ie~LksL~~ 258 (1096)
T KOG1859|consen 184 QLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSY-NCLRHVPQLSMVGC-KLQLLNLRN-NALTTLRG-IENLKSLYG 258 (1096)
T ss_pred HHHHHhhhhccchhhhhhhH-HHHhccccccccccc-chhccccccchhhh-hheeeeecc-cHHHhhhh-HHhhhhhhc
Confidence 34456777788887777665 667777788888877 677777752 2222 377777777 46666633 456777777
Q ss_pred EECCCCcccc
Q 015983 132 AVETVTKFAK 141 (397)
Q Consensus 132 L~ls~n~~~~ 141 (397)
|+++.|-+..
T Consensus 259 LDlsyNll~~ 268 (1096)
T KOG1859|consen 259 LDLSYNLLSE 268 (1096)
T ss_pred cchhHhhhhc
Confidence 7777775543
No 44
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.40 E-value=0.0001 Score=79.56 Aligned_cols=124 Identities=21% Similarity=0.297 Sum_probs=84.9
Q ss_pred CCcEEeccCCCCC---------ccCCCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc
Q 015983 3 SLKTLVLSGCLKL---------KKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA 73 (397)
Q Consensus 3 sL~~L~LsgC~~L---------~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~ 73 (397)
+|+.|+++|-..+ ..+|.+..|.+.+-.+.. ..|-....++++|..||+++++|+.+ .
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~------------~dF~~lc~sFpNL~sLDIS~TnI~nl-~ 189 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDN------------DDFSQLCASFPNLRSLDISGTNISNL-S 189 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecCceecc------------hhHHHHhhccCccceeecCCCCccCc-H
Confidence 6888888885433 135555555555533321 11122235778999999999999988 7
Q ss_pred cccCCCCCCEEEecCCCCCCCCCh--hccCCCcCceeeeecccCCccCC-------cccCCCCCCcEEECCCCcccc
Q 015983 74 SIELLSGNVLLNLKDRKNLKSLPS--TINGLRCLRMLHLSGCSKLKNAP-------ETLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 74 si~~L~~L~~L~Ls~c~~l~~LP~--~i~~L~sL~~L~Ls~C~~L~~lP-------~~~~~L~~L~~L~ls~n~~~~ 141 (397)
++++|++|+.|.+.+ -.+..-.. .+.+|++|+.||+|.- +....+ +.-..|+.|+.||.+++.+..
T Consensus 190 GIS~LknLq~L~mrn-Le~e~~~~l~~LF~L~~L~vLDIS~~-~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 190 GISRLKNLQVLSMRN-LEFESYQDLIDLFNLKKLRVLDISRD-KNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHhccccHHHHhccC-CCCCchhhHHHHhcccCCCeeecccc-ccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 899999999999987 34444332 4668999999999973 332222 223458899999999987653
No 45
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.39 E-value=0.00017 Score=49.67 Aligned_cols=32 Identities=28% Similarity=0.449 Sum_probs=15.1
Q ss_pred CCCEEEecCCCCCCCCChhccCCCcCceeeeec
Q 015983 80 GNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSG 112 (397)
Q Consensus 80 ~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~ 112 (397)
+|+.|++++ +.+..+|..+++|++|+.|++++
T Consensus 2 ~L~~L~l~~-N~i~~l~~~l~~l~~L~~L~l~~ 33 (44)
T PF12799_consen 2 NLEELDLSN-NQITDLPPELSNLPNLETLNLSN 33 (44)
T ss_dssp T-SEEEETS-SS-SSHGGHGTTCTTSSEEEETS
T ss_pred cceEEEccC-CCCcccCchHhCCCCCCEEEecC
Confidence 445555555 34555554445555555555554
No 46
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.36 E-value=1.3e-05 Score=68.75 Aligned_cols=102 Identities=20% Similarity=0.237 Sum_probs=81.2
Q ss_pred CcEEeccCCCCCccCCCc----------ceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc
Q 015983 4 LKTLVLSGCLKLKKFPDI----------VQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA 73 (397)
Q Consensus 4 L~~L~LsgC~~L~~lP~~----------~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~ 73 (397)
+..|+|+.|. +..+++. ...+|++|.++.+|..+. ...+.++.|+|++|.|+++|.
T Consensus 29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft-------------~kf~t~t~lNl~~neisdvPe 94 (177)
T KOG4579|consen 29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFT-------------IKFPTATTLNLANNEISDVPE 94 (177)
T ss_pred hhhcccccch-hhHHHHHHHHHhCCceEEEEecccchhhhCCHHHh-------------hccchhhhhhcchhhhhhchH
Confidence 4567888883 4444432 227899999999887763 344568899999999999999
Q ss_pred cccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCc
Q 015983 74 SIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPE 121 (397)
Q Consensus 74 si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~ 121 (397)
.+..++.|+.|+++. |.+...|.-|..|.+|.+|+..+ +....+|.
T Consensus 95 E~Aam~aLr~lNl~~-N~l~~~p~vi~~L~~l~~Lds~~-na~~eid~ 140 (177)
T KOG4579|consen 95 ELAAMPALRSLNLRF-NPLNAEPRVIAPLIKLDMLDSPE-NARAEIDV 140 (177)
T ss_pred HHhhhHHhhhccccc-CccccchHHHHHHHhHHHhcCCC-CccccCcH
Confidence 999999999999998 78999999888899999999887 55666664
No 47
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.99 E-value=0.00022 Score=72.65 Aligned_cols=85 Identities=22% Similarity=0.229 Sum_probs=43.6
Q ss_pred CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcc-cCCCCCCcE
Q 015983 53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPET-LGKVESLES 131 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~-~~~L~~L~~ 131 (397)
..|.+|++|+|++|.|+.+. .+..+..|+.|++.+ |.+..++. +..+..|+.+++++| .+..+... ...+..|+.
T Consensus 115 ~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~-N~i~~~~~-~~~l~~L~~l~l~~n-~i~~ie~~~~~~~~~l~~ 190 (414)
T KOG0531|consen 115 SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSG-NLISDISG-LESLKSLKLLDLSYN-RIVDIENDELSELISLEE 190 (414)
T ss_pred hhhhcchheecccccccccc-chhhccchhhheecc-CcchhccC-CccchhhhcccCCcc-hhhhhhhhhhhhccchHH
Confidence 34555666666666665543 233444466666665 45555544 333555666666653 33333321 244455555
Q ss_pred EECCCCcccc
Q 015983 132 AVETVTKFAK 141 (397)
Q Consensus 132 L~ls~n~~~~ 141 (397)
+.+.+|.+..
T Consensus 191 l~l~~n~i~~ 200 (414)
T KOG0531|consen 191 LDLGGNSIRE 200 (414)
T ss_pred HhccCCchhc
Confidence 5555555444
No 48
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=96.71 E-value=0.00085 Score=68.41 Aligned_cols=90 Identities=20% Similarity=0.243 Sum_probs=76.2
Q ss_pred cCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCc
Q 015983 51 KTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLE 130 (397)
Q Consensus 51 ~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~ 130 (397)
.++.+++|+.|++.+|.|+.+...+..+.+|+.|+|++ |.+..+.. +..++.|+.|++++ +.+..+.. +..++.|+
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~-N~I~~i~~-l~~l~~L~~L~l~~-N~i~~~~~-~~~l~~L~ 165 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSF-NKITKLEG-LSTLTLLKELNLSG-NLISDISG-LESLKSLK 165 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccc-cccccccc-hhhccchhhheecc-CcchhccC-Cccchhhh
Confidence 35778899999999999999887788999999999999 78888865 66778899999999 57777754 35588899
Q ss_pred EEECCCCccccccc
Q 015983 131 SAVETVTKFAKAEL 144 (397)
Q Consensus 131 ~L~ls~n~~~~L~~ 144 (397)
.+++++|.+..++.
T Consensus 166 ~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 166 LLDLSYNRIVDIEN 179 (414)
T ss_pred cccCCcchhhhhhh
Confidence 99999998887766
No 49
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.54 E-value=5.1e-05 Score=80.03 Aligned_cols=83 Identities=25% Similarity=0.226 Sum_probs=55.2
Q ss_pred CCCCCCCEEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCc--ccCCCCCC
Q 015983 53 SSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPE--TLGKVESL 129 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~--~~~~L~~L 129 (397)
..++.|++|||++|.++.+|.- .... +|+.|+|++ |.+++|-. |.+|.+|+.||+++| .+....+ .+..|.+|
T Consensus 206 r~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrn-N~l~tL~g-ie~LksL~~LDlsyN-ll~~hseL~pLwsLs~L 281 (1096)
T KOG1859|consen 206 RRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRN-NALTTLRG-IENLKSLYGLDLSYN-LLSEHSELEPLWSLSSL 281 (1096)
T ss_pred Hhcccccccccccchhccccccchhhh-hheeeeecc-cHHHhhhh-HHhhhhhhccchhHh-hhhcchhhhHHHHHHHH
Confidence 3456788888888888877742 2222 388888887 67777754 777888888888884 3433322 23455667
Q ss_pred cEEECCCCcc
Q 015983 130 ESAVETVTKF 139 (397)
Q Consensus 130 ~~L~ls~n~~ 139 (397)
..|.+.||++
T Consensus 282 ~~L~LeGNPl 291 (1096)
T KOG1859|consen 282 IVLWLEGNPL 291 (1096)
T ss_pred HHHhhcCCcc
Confidence 7777777764
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.20 E-value=0.0077 Score=55.02 Aligned_cols=96 Identities=19% Similarity=0.223 Sum_probs=70.0
Q ss_pred EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccC-CCCCCEEEecCCCCCCCCCh--hcc
Q 015983 24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIEL-LSGNVLLNLKDRKNLKSLPS--TIN 100 (397)
Q Consensus 24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~-L~~L~~L~Ls~c~~l~~LP~--~i~ 100 (397)
++|+.|.+..++. +..++.|..|.|.+|+|+.+.+.+.. +++|+.|.|.+ |++..+-+ -+.
T Consensus 47 iDLtdNdl~~l~~---------------lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa 110 (233)
T KOG1644|consen 47 IDLTDNDLRKLDN---------------LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLA 110 (233)
T ss_pred ecccccchhhccc---------------CCCccccceEEecCCcceeeccchhhhccccceEEecC-cchhhhhhcchhc
Confidence 7888888876542 35678899999999999998777654 56799999998 67777633 245
Q ss_pred CCCcCceeeeecccCCccCCc----ccCCCCCCcEEECCC
Q 015983 101 GLRCLRMLHLSGCSKLKNAPE----TLGKVESLESAVETV 136 (397)
Q Consensus 101 ~L~sL~~L~Ls~C~~L~~lP~----~~~~L~~L~~L~ls~ 136 (397)
.++.|++|.+-+| ....-+. .+-.+++|+.||...
T Consensus 111 ~~p~L~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 111 SCPKLEYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred cCCccceeeecCC-chhcccCceeEEEEecCcceEeehhh
Confidence 6788999988885 3332221 245677888888754
No 51
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.04 E-value=0.006 Score=66.18 Aligned_cols=96 Identities=24% Similarity=0.281 Sum_probs=59.4
Q ss_pred CCCCcEEeccCCCC--------CccCCCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCC
Q 015983 1 MKSLKTLVLSGCLK--------LKKFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLP 72 (397)
Q Consensus 1 L~sL~~L~LsgC~~--------L~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP 72 (397)
|++|+.|.++|=.. -..||++..||+|+++++.+ ..|++| ++|+.|.+.+=.++.-.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~L--------------knLq~L~mrnLe~e~~~ 211 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRL--------------KNLQVLSMRNLEFESYQ 211 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhcc--------------ccHHHHhccCCCCCchh
Confidence 68999999998321 24799999999999999988 555444 45555555444443322
Q ss_pred --ccccCCCCCCEEEecCCCCCCCCCh-------hccCCCcCceeeeec
Q 015983 73 --ASIELLSGNVLLNLKDRKNLKSLPS-------TINGLRCLRMLHLSG 112 (397)
Q Consensus 73 --~si~~L~~L~~L~Ls~c~~l~~LP~-------~i~~L~sL~~L~Ls~ 112 (397)
..+.+|++|+.||+|. ......+. .-..|++|+.||.|+
T Consensus 212 ~l~~LF~L~~L~vLDIS~-~~~~~~~~ii~qYlec~~~LpeLrfLDcSg 259 (699)
T KOG3665|consen 212 DLIDLFNLKKLRVLDISR-DKNNDDTKIIEQYLECGMVLPELRFLDCSG 259 (699)
T ss_pred hHHHHhcccCCCeeeccc-cccccchHHHHHHHHhcccCccccEEecCC
Confidence 1345666777777765 22222221 112466777777666
No 52
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.57 E-value=0.0023 Score=62.69 Aligned_cols=85 Identities=12% Similarity=0.048 Sum_probs=44.1
Q ss_pred CCCCCEEEeeCCCCCcCCc-----cccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeecccCCc----cCC
Q 015983 55 KDQLLEIHLEGTAIRGLPA-----SIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCSKLK----NAP 120 (397)
Q Consensus 55 l~~L~~L~Ls~~~i~~lP~-----si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~~L~----~lP 120 (397)
-+.|+.+....|++..-+. .++..+.|+.+.+.. |.+.. +-..+..+++|+.|||.+|..-. .+.
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 3456666666666653332 245555666666665 33321 22334556666666666643211 122
Q ss_pred cccCCCCCCcEEECCCCccc
Q 015983 121 ETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 121 ~~~~~L~~L~~L~ls~n~~~ 140 (397)
+.+..+++|+.|+++.|.++
T Consensus 235 kaL~s~~~L~El~l~dcll~ 254 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLE 254 (382)
T ss_pred HHhcccchheeecccccccc
Confidence 33445556666666666554
No 53
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.48 E-value=0.021 Score=52.25 Aligned_cols=85 Identities=19% Similarity=0.231 Sum_probs=65.1
Q ss_pred CCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhc-cCCCcCceeeeecccCCccCCc--ccCCCCCCcEE
Q 015983 56 DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTI-NGLRCLRMLHLSGCSKLKNAPE--TLGKVESLESA 132 (397)
Q Consensus 56 ~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i-~~L~sL~~L~Ls~C~~L~~lP~--~~~~L~~L~~L 132 (397)
.+...+||++|.|..++ .+.++.+|.+|.|.+ |++..+-..+ .-+++|..|.|.+ +++..+-+ .+..++.|++|
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~n-NrIt~I~p~L~~~~p~l~~L~Ltn-Nsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNN-NRITRIDPDLDTFLPNLKTLILTN-NSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecC-CcceeeccchhhhccccceEEecC-cchhhhhhcchhccCCcccee
Confidence 56788999999888665 366788999999998 7898884434 3457799999998 56666643 35678889999
Q ss_pred ECCCCcccccc
Q 015983 133 VETVTKFAKAE 143 (397)
Q Consensus 133 ~ls~n~~~~L~ 143 (397)
.+-+|+++..+
T Consensus 119 tll~Npv~~k~ 129 (233)
T KOG1644|consen 119 TLLGNPVEHKK 129 (233)
T ss_pred eecCCchhccc
Confidence 99999877644
No 54
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.25 E-value=0.0054 Score=35.54 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=13.0
Q ss_pred CCCEEEeeCCCCCcCCccccC
Q 015983 57 QLLEIHLEGTAIRGLPASIEL 77 (397)
Q Consensus 57 ~L~~L~Ls~~~i~~lP~si~~ 77 (397)
+|++|+|++|.|+.+|.+|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 356666666666666665543
No 55
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=95.19 E-value=0.013 Score=57.47 Aligned_cols=88 Identities=16% Similarity=0.041 Sum_probs=60.4
Q ss_pred CCCCCCCEEEeeCCCCCcC--------------CccccCCCCCCEEEecCCCCCCCCC-----hhccCCCcCceeeeecc
Q 015983 53 SSKDQLLEIHLEGTAIRGL--------------PASIELLSGNVLLNLKDRKNLKSLP-----STINGLRCLRMLHLSGC 113 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~~i~~l--------------P~si~~L~~L~~L~Ls~c~~l~~LP-----~~i~~L~sL~~L~Ls~C 113 (397)
.+..+|++|+|.+|.+... ..-++.-.+|+.+.... |++..-+ ..+...+.|+.+.+..|
T Consensus 117 ~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r-Nrlen~ga~~~A~~~~~~~~leevr~~qN 195 (382)
T KOG1909|consen 117 SSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR-NRLENGGATALAEAFQSHPTLEEVRLSQN 195 (382)
T ss_pred HhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec-cccccccHHHHHHHHHhccccceEEEecc
Confidence 4466788888888877521 11245567899998887 6777654 33556678999999885
Q ss_pred cCCc----cCCcccCCCCCCcEEECCCCcccc
Q 015983 114 SKLK----NAPETLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 114 ~~L~----~lP~~~~~L~~L~~L~ls~n~~~~ 141 (397)
..-. -+-..+..++.|+.|++..|.|+.
T Consensus 196 ~I~~eG~~al~eal~~~~~LevLdl~DNtft~ 227 (382)
T KOG1909|consen 196 GIRPEGVTALAEALEHCPHLEVLDLRDNTFTL 227 (382)
T ss_pred cccCchhHHHHHHHHhCCcceeeecccchhhh
Confidence 3221 123346788999999999998875
No 56
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=94.51 E-value=0.0064 Score=58.63 Aligned_cols=80 Identities=25% Similarity=0.276 Sum_probs=49.4
Q ss_pred CCCCEEEeeCCC--CC--cCCccccCCCCCCEEEecCCCCCCC-CChhccCCCcCceeeeecccCCccCCc---ccCCCC
Q 015983 56 DQLLEIHLEGTA--IR--GLPASIELLSGNVLLNLKDRKNLKS-LPSTINGLRCLRMLHLSGCSKLKNAPE---TLGKVE 127 (397)
Q Consensus 56 ~~L~~L~Ls~~~--i~--~lP~si~~L~~L~~L~Ls~c~~l~~-LP~~i~~L~sL~~L~Ls~C~~L~~lP~---~~~~L~ 127 (397)
++|+.|+|+|+. +. .+..-....++|..|||+.|..++. .-..+.+++.|++|.++.|..+ +|+ .+++.+
T Consensus 286 e~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~p 363 (419)
T KOG2120|consen 286 ETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKP 363 (419)
T ss_pred hhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCc
Confidence 356677777752 21 2222234667788888888766654 1223556778888888887543 232 356677
Q ss_pred CCcEEECCCC
Q 015983 128 SLESAVETVT 137 (397)
Q Consensus 128 ~L~~L~ls~n 137 (397)
+|.+|++.++
T Consensus 364 sl~yLdv~g~ 373 (419)
T KOG2120|consen 364 SLVYLDVFGC 373 (419)
T ss_pred ceEEEEeccc
Confidence 7888887765
No 57
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.27 E-value=0.062 Score=50.84 Aligned_cols=84 Identities=21% Similarity=0.193 Sum_probs=43.6
Q ss_pred CCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCC--CCCCCChhccCCCcCceeeeecccCCccCC--cccCCCCCCcE
Q 015983 56 DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRK--NLKSLPSTINGLRCLRMLHLSGCSKLKNAP--ETLGKVESLES 131 (397)
Q Consensus 56 ~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~--~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP--~~~~~L~~L~~ 131 (397)
..|+.|.+.+..++.+ ..+..|++|+.|.++.++ -...++-....+++|++|++++| +++.+- ..+..+++|..
T Consensus 43 ~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~N-ki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGN-KIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCC-ccccccccchhhhhcchhh
Confidence 3445555544433322 122346677777777631 12234444445577777777774 444321 12345566667
Q ss_pred EECCCCcccc
Q 015983 132 AVETVTKFAK 141 (397)
Q Consensus 132 L~ls~n~~~~ 141 (397)
|++.+|..++
T Consensus 121 Ldl~n~~~~~ 130 (260)
T KOG2739|consen 121 LDLFNCSVTN 130 (260)
T ss_pred hhcccCCccc
Confidence 7777665544
No 58
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.10 E-value=0.0046 Score=59.05 Aligned_cols=79 Identities=20% Similarity=0.180 Sum_probs=54.5
Q ss_pred CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCCh--hccCCCcCceeeeecccCCccCCc-----ccCC
Q 015983 53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPS--TINGLRCLRMLHLSGCSKLKNAPE-----TLGK 125 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~--~i~~L~sL~~L~Ls~C~~L~~lP~-----~~~~ 125 (397)
..|+.|+.|.|+-|.|+.|- .+..+++|+.|.|.. |.+.++-+ -+.+|++|+.|+|..|.--+.-+. .+.-
T Consensus 38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~ 115 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRV 115 (388)
T ss_pred HhcccceeEEeeccccccch-hHHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhHhhccCCcccccchhHHHHHHHH
Confidence 57888888989888888774 366778888888887 67777654 356788888888887654433332 1234
Q ss_pred CCCCcEEE
Q 015983 126 VESLESAV 133 (397)
Q Consensus 126 L~~L~~L~ 133 (397)
|++|+.|+
T Consensus 116 LPnLkKLD 123 (388)
T KOG2123|consen 116 LPNLKKLD 123 (388)
T ss_pred cccchhcc
Confidence 55566554
No 59
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.91 E-value=0.066 Score=28.97 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=7.2
Q ss_pred CCCEEEeeCCCCCcCC
Q 015983 57 QLLEIHLEGTAIRGLP 72 (397)
Q Consensus 57 ~L~~L~Ls~~~i~~lP 72 (397)
+|+.|+|++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4566666666665554
No 60
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=0.021 Score=55.12 Aligned_cols=111 Identities=18% Similarity=0.195 Sum_probs=69.0
Q ss_pred CCCcEEeccCCCCCccCC---------CcceEEeecCCccc-----cchhh-hhhhccc-----cccCc-----cCCCCC
Q 015983 2 KSLKTLVLSGCLKLKKFP---------DIVQVLWDGTDIRE-----LSFAI-ELLFRLV-----QEFPE-----KTSSKD 56 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP---------~~~~L~Ls~n~l~~-----Lp~si-~~L~~L~-----~~~P~-----~l~~l~ 56 (397)
..|+.|||++|+.++++- .+..|+|+.+.+.+ +-..| .++++|- +.+-. .....+
T Consensus 234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp 313 (419)
T KOG2120|consen 234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP 313 (419)
T ss_pred ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence 368899999998765432 22226666654431 11122 1344432 11110 013467
Q ss_pred CCCEEEeeCC-CCC-cCCccccCCCCCCEEEecCCCCCCCCChh---ccCCCcCceeeeeccc
Q 015983 57 QLLEIHLEGT-AIR-GLPASIELLSGNVLLNLKDRKNLKSLPST---INGLRCLRMLHLSGCS 114 (397)
Q Consensus 57 ~L~~L~Ls~~-~i~-~lP~si~~L~~L~~L~Ls~c~~l~~LP~~---i~~L~sL~~L~Ls~C~ 114 (397)
+|.+|||++| .++ .+-..|..++.|++|.++.|..+ +|.. +...++|.+|++.||-
T Consensus 314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ceeeeccccccccCchHHHHHHhcchheeeehhhhcCC--ChHHeeeeccCcceEEEEecccc
Confidence 8999999987 555 33345678899999999999655 4443 4567899999999984
No 61
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.30 E-value=0.082 Score=28.59 Aligned_cols=17 Identities=41% Similarity=0.530 Sum_probs=10.9
Q ss_pred CCCcEEeccCCCCCccCC
Q 015983 2 KSLKTLVLSGCLKLKKFP 19 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP 19 (397)
++|+.|+|++|. ++++|
T Consensus 1 ~~L~~L~l~~n~-L~~lP 17 (17)
T PF13504_consen 1 PNLRTLDLSNNR-LTSLP 17 (17)
T ss_dssp TT-SEEEETSS---SSE-
T ss_pred CccCEEECCCCC-CCCCc
Confidence 478999999985 77776
No 62
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=92.14 E-value=0.059 Score=31.09 Aligned_cols=17 Identities=41% Similarity=0.665 Sum_probs=7.9
Q ss_pred CceeeeecccCCccCCcc
Q 015983 105 LRMLHLSGCSKLKNAPET 122 (397)
Q Consensus 105 L~~L~Ls~C~~L~~lP~~ 122 (397)
|++|+|++| .++.+|..
T Consensus 2 L~~Ldls~n-~l~~ip~~ 18 (22)
T PF00560_consen 2 LEYLDLSGN-NLTSIPSS 18 (22)
T ss_dssp ESEEEETSS-EESEEGTT
T ss_pred ccEEECCCC-cCEeCChh
Confidence 445555554 44444443
No 63
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.50 E-value=0.046 Score=52.86 Aligned_cols=83 Identities=28% Similarity=0.379 Sum_probs=53.7
Q ss_pred CCCCCCEEEeeCCCCCc---CCccccCCCCCCEEEecCCCCCC----CCChhccCCCcCceeeeecccCC--ccCCcccC
Q 015983 54 SKDQLLEIHLEGTAIRG---LPASIELLSGNVLLNLKDRKNLK----SLPSTINGLRCLRMLHLSGCSKL--KNAPETLG 124 (397)
Q Consensus 54 ~l~~L~~L~Ls~~~i~~---lP~si~~L~~L~~L~Ls~c~~l~----~LP~~i~~L~sL~~L~Ls~C~~L--~~lP~~~~ 124 (397)
..+.+++|||.+|.|+. +-.-+.+|+.|+.|+|+. |.+. ++| ..+.+|++|.|.| +.+ ..+-..+.
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~-N~L~s~I~~lp---~p~~nl~~lVLNg-T~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSC-NSLSSDIKSLP---LPLKNLRVLVLNG-TGLSWTQSTSSLD 143 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccC-CcCCCccccCc---ccccceEEEEEcC-CCCChhhhhhhhh
Confidence 34568888999998874 334467888899999985 5543 344 2356888888877 333 22333455
Q ss_pred CCCCCcEEECCCCcccc
Q 015983 125 KVESLESAVETVTKFAK 141 (397)
Q Consensus 125 ~L~~L~~L~ls~n~~~~ 141 (397)
.++.++.|+++.|++++
T Consensus 144 ~lP~vtelHmS~N~~rq 160 (418)
T KOG2982|consen 144 DLPKVTELHMSDNSLRQ 160 (418)
T ss_pred cchhhhhhhhccchhhh
Confidence 66666777777775544
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.40 E-value=0.016 Score=55.39 Aligned_cols=82 Identities=16% Similarity=0.162 Sum_probs=65.9
Q ss_pred CCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCc--ccCCCCCCcEE
Q 015983 55 KDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPE--TLGKVESLESA 132 (397)
Q Consensus 55 l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~--~~~~L~~L~~L 132 (397)
+.+.+.|+..||.|..+. -+..++.|+.|.|+- |++.+|-. +..++.|+.|.|.. +.+..+-+ .+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSv-NkIssL~p-l~rCtrLkElYLRk-N~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSV-NKISSLAP-LQRCTRLKELYLRK-NCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHHH-HHHhcccceeEEeec-cccccchh-HHHHHHHHHHHHHh-cccccHHHHHHHhcCchhhhH
Confidence 567788999999988652 356788999999998 78888855 67789999999998 46666654 36789999999
Q ss_pred ECCCCccc
Q 015983 133 VETVTKFA 140 (397)
Q Consensus 133 ~ls~n~~~ 140 (397)
.+..|++.
T Consensus 94 WL~ENPCc 101 (388)
T KOG2123|consen 94 WLDENPCC 101 (388)
T ss_pred hhccCCcc
Confidence 99988765
No 65
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.74 E-value=0.24 Score=29.52 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=13.6
Q ss_pred CCCCCEEEeeCCCCCcCCcc
Q 015983 55 KDQLLEIHLEGTAIRGLPAS 74 (397)
Q Consensus 55 l~~L~~L~Ls~~~i~~lP~s 74 (397)
|++|+.|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 66
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.74 E-value=0.24 Score=29.52 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=13.6
Q ss_pred CCCCCEEEeeCCCCCcCCcc
Q 015983 55 KDQLLEIHLEGTAIRGLPAS 74 (397)
Q Consensus 55 l~~L~~L~Ls~~~i~~lP~s 74 (397)
|++|+.|+|++|.|+.+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677777777777777654
No 67
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.13 E-value=0.13 Score=49.89 Aligned_cols=78 Identities=19% Similarity=0.139 Sum_probs=44.7
Q ss_pred EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccc-cCCCCCCEEEecCCCCCC--CCChhcc
Q 015983 24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASI-ELLSGNVLLNLKDRKNLK--SLPSTIN 100 (397)
Q Consensus 24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si-~~L~~L~~L~Ls~c~~l~--~LP~~i~ 100 (397)
|+|.+|.|+....-. .++.+|+.|+.|+|+.|.+...-.+. --+.+|+.|-|.| ..+. ..-+.+.
T Consensus 76 lDL~~N~iSdWseI~-----------~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNg-T~L~w~~~~s~l~ 143 (418)
T KOG2982|consen 76 LDLTGNLISDWSEIG-----------AILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNG-TGLSWTQSTSSLD 143 (418)
T ss_pred hhcccchhccHHHHH-----------HHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcC-CCCChhhhhhhhh
Confidence 788888776443211 22356777888888877665221111 2345777777766 3332 2334455
Q ss_pred CCCcCceeeeecc
Q 015983 101 GLRCLRMLHLSGC 113 (397)
Q Consensus 101 ~L~sL~~L~Ls~C 113 (397)
.++.++.|.++.|
T Consensus 144 ~lP~vtelHmS~N 156 (418)
T KOG2982|consen 144 DLPKVTELHMSDN 156 (418)
T ss_pred cchhhhhhhhccc
Confidence 6666677777763
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=89.04 E-value=0.28 Score=46.49 Aligned_cols=62 Identities=26% Similarity=0.375 Sum_probs=46.9
Q ss_pred CCCCCCEEEeeCC--CCC-cCCccccCCCCCCEEEecCCCCCCC---CChhccCCCcCceeeeecccCCc
Q 015983 54 SKDQLLEIHLEGT--AIR-GLPASIELLSGNVLLNLKDRKNLKS---LPSTINGLRCLRMLHLSGCSKLK 117 (397)
Q Consensus 54 ~l~~L~~L~Ls~~--~i~-~lP~si~~L~~L~~L~Ls~c~~l~~---LP~~i~~L~sL~~L~Ls~C~~L~ 117 (397)
.|++|+.|.++.| .+. .++.....+++|++|++++ |.++. ++. ...+.+|..|++.+|....
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~p-l~~l~nL~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRP-LKELENLKSLDLFNCSVTN 130 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccch-hhhhcchhhhhcccCCccc
Confidence 5778999999999 555 6776667779999999999 56654 332 4567788899999885443
No 69
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.24 E-value=0.015 Score=54.35 Aligned_cols=83 Identities=17% Similarity=0.192 Sum_probs=54.0
Q ss_pred CCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEEC
Q 015983 55 KDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVE 134 (397)
Q Consensus 55 l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~l 134 (397)
.+..+.||++.|.+..+-..++.++.|..|+++. +.+..+|..++.+..+..+++.. +.+...|...+.++.++.+++
T Consensus 41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sk-nq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~~~k~~e~ 118 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSK-NQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEPHPKKNEQ 118 (326)
T ss_pred cceeeeehhhhhHHHhhccchHHHHHHHHHhccH-hhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccCCcchhhh
Confidence 3455666666666666666666666677777766 56666676666666666666655 466666766666666666666
Q ss_pred CCCcc
Q 015983 135 TVTKF 139 (397)
Q Consensus 135 s~n~~ 139 (397)
-+|.+
T Consensus 119 k~~~~ 123 (326)
T KOG0473|consen 119 KKTEF 123 (326)
T ss_pred ccCcc
Confidence 66654
No 70
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=82.66 E-value=1 Score=26.72 Aligned_cols=19 Identities=32% Similarity=0.530 Sum_probs=13.0
Q ss_pred CCCCcEEeccCCCCCccCCC
Q 015983 1 MKSLKTLVLSGCLKLKKFPD 20 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP~ 20 (397)
|++|+.|+|++| .++.+|.
T Consensus 1 L~~L~~L~L~~N-~l~~lp~ 19 (26)
T smart00369 1 LPNLRELDLSNN-QLSSLPP 19 (26)
T ss_pred CCCCCEEECCCC-cCCcCCH
Confidence 567777777776 5666654
No 71
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=82.66 E-value=1 Score=26.72 Aligned_cols=19 Identities=32% Similarity=0.530 Sum_probs=13.0
Q ss_pred CCCCcEEeccCCCCCccCCC
Q 015983 1 MKSLKTLVLSGCLKLKKFPD 20 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP~ 20 (397)
|++|+.|+|++| .++.+|.
T Consensus 1 L~~L~~L~L~~N-~l~~lp~ 19 (26)
T smart00370 1 LPNLRELDLSNN-QLSSLPP 19 (26)
T ss_pred CCCCCEEECCCC-cCCcCCH
Confidence 567777777776 5666654
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=81.25 E-value=0.07 Score=49.98 Aligned_cols=76 Identities=12% Similarity=0.077 Sum_probs=59.9
Q ss_pred EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCC
Q 015983 24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLR 103 (397)
Q Consensus 24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~ 103 (397)
||++.|.+..+...+. .++.|..|+++.|.|.-+|..++.+..+..+++.+ |++..+|.+++.++
T Consensus 47 ld~~s~r~vn~~~n~s--------------~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~-n~~~~~p~s~~k~~ 111 (326)
T KOG0473|consen 47 LDLSSNRLVNLGKNFS--------------ILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHK-NNHSQQPKSQKKEP 111 (326)
T ss_pred ehhhhhHHHhhccchH--------------HHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhc-cchhhCCccccccC
Confidence 6777776665554443 33457788899999999999988888888888877 78889999999999
Q ss_pred cCceeeeeccc
Q 015983 104 CLRMLHLSGCS 114 (397)
Q Consensus 104 sL~~L~Ls~C~ 114 (397)
+++++++.++.
T Consensus 112 ~~k~~e~k~~~ 122 (326)
T KOG0473|consen 112 HPKKNEQKKTE 122 (326)
T ss_pred CcchhhhccCc
Confidence 99999888754
No 73
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=76.64 E-value=8.1 Score=31.62 Aligned_cols=79 Identities=14% Similarity=0.219 Sum_probs=35.0
Q ss_pred CCCCCCCEEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCC
Q 015983 53 SSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESL 129 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L 129 (397)
...++|+.+.+.. .++.++.. +..+++|+.+.+.+ .+..++. .+.++.+|+.+.+.+ .+..++. .+..+..|
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPN--NLTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESS--TTSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTE
T ss_pred hCCCCCCEEEECC-CeeEeChhhcccccccccccccc--cccccceeeeecccccccccccc--cccccccccccccccc
Confidence 4455666666653 45555533 55555677776665 3555544 445555666666643 3444433 34445566
Q ss_pred cEEECCC
Q 015983 130 ESAVETV 136 (397)
Q Consensus 130 ~~L~ls~ 136 (397)
+.+.+..
T Consensus 84 ~~i~~~~ 90 (129)
T PF13306_consen 84 KNIDIPS 90 (129)
T ss_dssp CEEEETT
T ss_pred cccccCc
Confidence 6655543
No 74
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=75.64 E-value=0.89 Score=43.75 Aligned_cols=131 Identities=13% Similarity=0.094 Sum_probs=73.4
Q ss_pred CCCcEEeccCCCCCccCCCcce-----------EEeecCCccccc-----hhhhhhhccccccCccCCCCCCCCEEEeeC
Q 015983 2 KSLKTLVLSGCLKLKKFPDIVQ-----------VLWDGTDIRELS-----FAIELLFRLVQEFPEKTSSKDQLLEIHLEG 65 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP~~~~-----------L~Ls~n~l~~Lp-----~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~ 65 (397)
+.|++.+||.|-.-..+|+..+ |.|++|.+..+. ..+..|.... ...+-+.|+......
T Consensus 92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nK-----Kaa~kp~Le~vicgr 166 (388)
T COG5238 92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNK-----KAADKPKLEVVICGR 166 (388)
T ss_pred CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHh-----hhccCCCceEEEecc
Confidence 4677777777754444554332 777777665332 2222221111 012345677777777
Q ss_pred CCCCcCCcc-----ccCCCCCCEEEecCCCCCCCCCh--------hccCCCcCceeeeecccCCc----cCCcccCCCCC
Q 015983 66 TAIRGLPAS-----IELLSGNVLLNLKDRKNLKSLPS--------TINGLRCLRMLHLSGCSKLK----NAPETLGKVES 128 (397)
Q Consensus 66 ~~i~~lP~s-----i~~L~~L~~L~Ls~c~~l~~LP~--------~i~~L~sL~~L~Ls~C~~L~----~lP~~~~~L~~ 128 (397)
|++...|.- +..-.+|+.+.+.. |.+. |. .+..+.+|+.|||..|.... .+...+..++.
T Consensus 167 NRlengs~~~~a~~l~sh~~lk~vki~q-NgIr--pegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~ 243 (388)
T COG5238 167 NRLENGSKELSAALLESHENLKEVKIQQ-NGIR--PEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL 243 (388)
T ss_pred chhccCcHHHHHHHHHhhcCceeEEeee-cCcC--cchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence 877755532 33345778888876 4443 32 23356789999998864221 12233445556
Q ss_pred CcEEECCCCccc
Q 015983 129 LESAVETVTKFA 140 (397)
Q Consensus 129 L~~L~ls~n~~~ 140 (397)
|+.|.+..|.++
T Consensus 244 lrEL~lnDClls 255 (388)
T COG5238 244 LRELRLNDCLLS 255 (388)
T ss_pred hhhccccchhhc
Confidence 788888888654
No 75
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.04 E-value=0.31 Score=44.71 Aligned_cols=79 Identities=18% Similarity=0.141 Sum_probs=50.8
Q ss_pred CCEEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCC--ChhccCCCcCceeeeecccCCccCC-cccCCCCCCcEEE
Q 015983 58 LLEIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSL--PSTINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAV 133 (397)
Q Consensus 58 L~~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~L--P~~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ 133 (397)
++.++-+++.|... -..+.++++++.|.+.+|..+..- -..-+-.++|+.|+|++|..++.-- ..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 56677777666532 244677888888899888776531 1101134789999999998776542 2345666777666
Q ss_pred CCC
Q 015983 134 ETV 136 (397)
Q Consensus 134 ls~ 136 (397)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 544
No 76
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=68.29 E-value=1.3 Score=44.95 Aligned_cols=61 Identities=28% Similarity=0.404 Sum_probs=26.2
Q ss_pred CCCCEEEeeCCC-CCcCC-ccc-cCCCCCCEEEecCCCCCCC--CChhccCCCcCceeeeecccCC
Q 015983 56 DQLLEIHLEGTA-IRGLP-ASI-ELLSGNVLLNLKDRKNLKS--LPSTINGLRCLRMLHLSGCSKL 116 (397)
Q Consensus 56 ~~L~~L~Ls~~~-i~~lP-~si-~~L~~L~~L~Ls~c~~l~~--LP~~i~~L~sL~~L~Ls~C~~L 116 (397)
.+|+.|+|+++. ++..- ..+ ..+++|+.|.+.+|..++. +-....++++|+.|++++|..+
T Consensus 243 ~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 243 RKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred CCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence 445555555544 33211 111 1244555555555543221 1122233455566666555443
No 77
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=67.07 E-value=3.4 Score=25.00 Aligned_cols=17 Identities=24% Similarity=0.530 Sum_probs=9.8
Q ss_pred CCCEEEeeCCCCCcCCc
Q 015983 57 QLLEIHLEGTAIRGLPA 73 (397)
Q Consensus 57 ~L~~L~Ls~~~i~~lP~ 73 (397)
+|+.|++++|.++++|.
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 35556666666665554
No 78
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=65.88 E-value=17 Score=29.62 Aligned_cols=79 Identities=11% Similarity=0.180 Sum_probs=45.6
Q ss_pred CCCCCCCCEEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCC
Q 015983 52 TSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVES 128 (397)
Q Consensus 52 l~~l~~L~~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~ 128 (397)
+..+++|+.+.+..+ ++.++.. +.++.+|+.+.+.+ .+..++. .+..++.|+.+.+.. .+..++. .+.++ .
T Consensus 31 F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~F~~~~~l~~i~~~~--~~~~i~~~~f~~~-~ 104 (129)
T PF13306_consen 31 FSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN--NLKSIGDNAFSNCTNLKNIDIPS--NITEIGSSSFSNC-N 104 (129)
T ss_dssp TTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS--TT-EE-TTTTTT-TTECEEEETT--T-BEEHTTTTTT--T
T ss_pred ccccccccccccccc-ccccceeeeecccccccccccc--cccccccccccccccccccccCc--cccEEchhhhcCC-C
Confidence 456778999999774 7777754 67777899999975 5666654 455688999998865 3555543 45555 6
Q ss_pred CcEEECCC
Q 015983 129 LESAVETV 136 (397)
Q Consensus 129 L~~L~ls~ 136 (397)
|+.+.+..
T Consensus 105 l~~i~~~~ 112 (129)
T PF13306_consen 105 LKEINIPS 112 (129)
T ss_dssp --EEE-TT
T ss_pred ceEEEECC
Confidence 77666554
No 79
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=65.09 E-value=5 Score=23.77 Aligned_cols=16 Identities=38% Similarity=0.704 Sum_probs=13.2
Q ss_pred CCCCcEEeccCCCCCc
Q 015983 1 MKSLKTLVLSGCLKLK 16 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~ 16 (397)
.++|+.|+|++|..++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4689999999997654
No 80
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=64.08 E-value=6.2 Score=23.82 Aligned_cols=19 Identities=26% Similarity=0.209 Sum_probs=13.6
Q ss_pred CCCcEEECCCCcccccccc
Q 015983 127 ESLESAVETVTKFAKAELI 145 (397)
Q Consensus 127 ~~L~~L~ls~n~~~~L~~l 145 (397)
..|+.|+++.|.++.++.+
T Consensus 2 ~~L~~L~L~~NkI~~IEnL 20 (26)
T smart00365 2 TNLEELDLSQNKIKKIENL 20 (26)
T ss_pred CccCEEECCCCccceecCc
Confidence 5677788888877766655
No 81
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=63.58 E-value=3.1 Score=42.28 Aligned_cols=15 Identities=27% Similarity=0.609 Sum_probs=9.7
Q ss_pred CCCcEEeccCCCCCc
Q 015983 2 KSLKTLVLSGCLKLK 16 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~ 16 (397)
..|+.|..++|..+.
T Consensus 294 ~~lq~l~~s~~t~~~ 308 (483)
T KOG4341|consen 294 HALQVLCYSSCTDIT 308 (483)
T ss_pred hHhhhhcccCCCCCc
Confidence 356777777776543
No 82
>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger.
Probab=63.38 E-value=3.7 Score=24.09 Aligned_cols=16 Identities=31% Similarity=0.410 Sum_probs=13.1
Q ss_pred hhcccCCCCCCCCCCC
Q 015983 338 LDRAEAGGSCCGDDAG 353 (397)
Q Consensus 338 ~~~~~~~~~~~~~~~~ 353 (397)
+|.+|..|+.|||+.=
T Consensus 2 lC~yEl~Gg~Cnd~~C 17 (23)
T PF10650_consen 2 LCPYELTGGVCNDPDC 17 (23)
T ss_pred CCccccCCCeeCCCCC
Confidence 5789999999988753
No 83
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=62.53 E-value=4.4 Score=39.18 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=16.7
Q ss_pred CCCCCEEEeeCCCCC-----cCCccccCCCCCCEEEec
Q 015983 55 KDQLLEIHLEGTAIR-----GLPASIELLSGNVLLNLK 87 (397)
Q Consensus 55 l~~L~~L~Ls~~~i~-----~lP~si~~L~~L~~L~Ls 87 (397)
|..+.+++|+||.|. .+-..|.+-.+|+..+++
T Consensus 29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfs 66 (388)
T COG5238 29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFS 66 (388)
T ss_pred hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehh
Confidence 555666666666554 233334444455555544
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.18 E-value=2.2 Score=39.24 Aligned_cols=60 Identities=17% Similarity=0.146 Sum_probs=38.6
Q ss_pred CCCCCCCEEEeeCC-CCCcCC-cccc-CCCCCCEEEecCCCCCCCCC-hhccCCCcCceeeeec
Q 015983 53 SSKDQLLEIHLEGT-AIRGLP-ASIE-LLSGNVLLNLKDRKNLKSLP-STINGLRCLRMLHLSG 112 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~-~i~~lP-~si~-~L~~L~~L~Ls~c~~l~~LP-~~i~~L~sL~~L~Ls~ 112 (397)
.+++.|+.|.+.+| .+...- .-++ -.++|+.|+|++|.+++.-- ..+..+++|+.|.+.+
T Consensus 122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~ 185 (221)
T KOG3864|consen 122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYD 185 (221)
T ss_pred hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcC
Confidence 45666777777665 222100 0112 34689999999999988642 3466778888888765
No 85
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=56.66 E-value=4.9 Score=40.75 Aligned_cols=86 Identities=20% Similarity=0.162 Sum_probs=43.9
Q ss_pred CCCCCCEEEeeCC--CCCcCC----ccccCCCCCCEEEecCCCCCCCC--ChhccCCCcCceeeeecccCCcc--CCccc
Q 015983 54 SKDQLLEIHLEGT--AIRGLP----ASIELLSGNVLLNLKDRKNLKSL--PSTINGLRCLRMLHLSGCSKLKN--APETL 123 (397)
Q Consensus 54 ~l~~L~~L~Ls~~--~i~~lP----~si~~L~~L~~L~Ls~c~~l~~L--P~~i~~L~sL~~L~Ls~C~~L~~--lP~~~ 123 (397)
..++|+.|+++++ .+...+ .....+.+|+.|++++|..+... ......+++|+.|.+.+|..+.. +-...
T Consensus 212 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~ 291 (482)
T KOG1947|consen 212 KCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIA 291 (482)
T ss_pred hCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHH
Confidence 4456677777652 222111 22334567777777776544322 11112256777777766654322 11223
Q ss_pred CCCCCCcEEECCCCcc
Q 015983 124 GKVESLESAVETVTKF 139 (397)
Q Consensus 124 ~~L~~L~~L~ls~n~~ 139 (397)
..++.|+.|++++|..
T Consensus 292 ~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 292 ERCPSLRELDLSGCHG 307 (482)
T ss_pred HhcCcccEEeeecCcc
Confidence 4456677777776543
No 86
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=48.13 E-value=12 Score=21.47 Aligned_cols=13 Identities=38% Similarity=0.261 Sum_probs=8.0
Q ss_pred CCCCcEEeccCCC
Q 015983 1 MKSLKTLVLSGCL 13 (397)
Q Consensus 1 L~sL~~L~LsgC~ 13 (397)
+++|++|+|++|.
T Consensus 1 ~~~L~~L~l~~n~ 13 (24)
T PF13516_consen 1 NPNLETLDLSNNQ 13 (24)
T ss_dssp -TT-SEEE-TSSB
T ss_pred CCCCCEEEccCCc
Confidence 4688888888874
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=37.17 E-value=25 Score=21.25 Aligned_cols=14 Identities=21% Similarity=0.349 Sum_probs=9.5
Q ss_pred CCCCEEEeeCCCCC
Q 015983 56 DQLLEIHLEGTAIR 69 (397)
Q Consensus 56 ~~L~~L~Ls~~~i~ 69 (397)
++|++|+|++|.|.
T Consensus 2 ~~L~~LdL~~N~i~ 15 (28)
T smart00368 2 PSLRELDLSNNKLG 15 (28)
T ss_pred CccCEEECCCCCCC
Confidence 35777777777664
No 88
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=32.91 E-value=16 Score=37.23 Aligned_cols=87 Identities=18% Similarity=0.149 Sum_probs=43.4
Q ss_pred CCCCCCEEEeeCCC-CCcCCcc--ccCCCCCCEEEecCCCCCCC--CChhccCCCcCceeeeecccCCccC-----Cccc
Q 015983 54 SKDQLLEIHLEGTA-IRGLPAS--IELLSGNVLLNLKDRKNLKS--LPSTINGLRCLRMLHLSGCSKLKNA-----PETL 123 (397)
Q Consensus 54 ~l~~L~~L~Ls~~~-i~~lP~s--i~~L~~L~~L~Ls~c~~l~~--LP~~i~~L~sL~~L~Ls~C~~L~~l-----P~~~ 123 (397)
+..+|+.|-|++|. ++..-.. =.+...|+.|++..|..+.. +-..-.+.+.|+.|.+++|..+..- -..-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 34566777776663 3322111 12445666666666543322 2222234566777777766544332 1222
Q ss_pred CCCCCCcEEECCCCccc
Q 015983 124 GKVESLESAVETVTKFA 140 (397)
Q Consensus 124 ~~L~~L~~L~ls~n~~~ 140 (397)
..+..|+.+.+++++..
T Consensus 398 c~~~~l~~lEL~n~p~i 414 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLI 414 (483)
T ss_pred ccccccceeeecCCCCc
Confidence 33455666666666543
Done!