Query 015983
Match_columns 397
No_of_seqs 337 out of 2914
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 05:54:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fcg_A Uncharacterized protein 99.7 3.4E-16 1.2E-20 152.4 15.9 136 2-139 104-265 (328)
2 4fcg_A Uncharacterized protein 99.6 3.7E-15 1.3E-19 145.0 12.2 140 1-141 126-291 (328)
3 1p9a_G Platelet glycoprotein I 99.4 7.7E-13 2.6E-17 126.5 13.5 139 2-143 31-188 (290)
4 2v70_A SLIT-2, SLIT homolog 2 99.4 1.1E-12 3.6E-17 120.4 13.8 123 5-142 14-144 (220)
5 3m19_A Variable lymphocyte rec 99.4 1.8E-12 6.1E-17 120.8 15.1 138 3-143 15-171 (251)
6 1ozn_A Reticulon 4 receptor; N 99.4 1.4E-12 4.8E-17 123.4 14.5 138 2-142 32-192 (285)
7 4ezg_A Putative uncharacterize 99.4 4.3E-13 1.5E-17 120.5 10.3 129 2-148 44-180 (197)
8 1p9a_G Platelet glycoprotein I 99.4 1.9E-12 6.5E-17 123.7 14.4 139 1-143 9-164 (290)
9 2o6q_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 120.3 14.8 139 2-143 37-197 (270)
10 3e6j_A Variable lymphocyte rec 99.4 3E-12 1E-16 118.0 14.0 122 5-142 22-150 (229)
11 3rfs_A Internalin B, repeat mo 99.4 2.9E-12 1E-16 120.8 14.1 139 1-143 40-197 (272)
12 3rgz_A Protein brassinosteroid 99.4 1.3E-12 4.6E-17 140.8 12.8 141 1-141 465-694 (768)
13 1h6t_A Internalin B; cell adhe 99.4 2.5E-12 8.7E-17 122.8 13.3 139 2-148 46-199 (291)
14 1h6u_A Internalin H; cell adhe 99.4 3.5E-12 1.2E-16 122.7 14.4 140 2-149 41-195 (308)
15 1h6u_A Internalin H; cell adhe 99.4 2.2E-12 7.7E-17 124.1 12.9 136 1-144 62-212 (308)
16 2ell_A Acidic leucine-rich nuc 99.4 1.6E-12 5.6E-17 113.4 10.6 123 2-142 24-162 (168)
17 2v9t_B SLIT homolog 2 protein 99.4 4.4E-12 1.5E-16 116.2 13.8 123 5-143 14-144 (220)
18 3m19_A Variable lymphocyte rec 99.4 4.3E-12 1.5E-16 118.2 14.0 135 3-139 36-191 (251)
19 3rfs_A Internalin B, repeat mo 99.4 4.2E-12 1.4E-16 119.8 14.0 137 1-140 62-218 (272)
20 1ogq_A PGIP-2, polygalacturona 99.4 6.8E-13 2.3E-17 128.0 8.6 138 2-141 50-211 (313)
21 2o6q_A Variable lymphocyte rec 99.4 7.2E-12 2.5E-16 117.9 15.4 138 3-143 17-173 (270)
22 1ogq_A PGIP-2, polygalacturona 99.4 8.1E-13 2.8E-17 127.4 8.2 138 1-140 100-257 (313)
23 1ozn_A Reticulon 4 receptor; N 99.4 2.7E-12 9.1E-17 121.5 11.6 142 1-143 55-217 (285)
24 1w8a_A SLIT protein; signaling 99.4 3.8E-12 1.3E-16 114.1 11.6 122 5-140 11-139 (192)
25 2xwt_C Thyrotropin receptor; s 99.4 2.7E-12 9.4E-17 118.4 10.9 137 3-142 32-195 (239)
26 3zyj_A Leucine-rich repeat-con 99.3 6.7E-12 2.3E-16 126.4 13.4 136 1-140 87-244 (440)
27 2z66_A Variable lymphocyte rec 99.3 9.6E-12 3.3E-16 118.7 13.8 139 1-142 77-238 (306)
28 2z66_A Variable lymphocyte rec 99.3 2.5E-12 8.6E-17 122.8 9.6 141 1-144 51-216 (306)
29 1xeu_A Internalin C; cellular 99.3 5.3E-12 1.8E-16 118.9 11.4 124 1-146 40-169 (263)
30 4eco_A Uncharacterized protein 99.3 6.7E-12 2.3E-16 132.6 13.4 81 54-136 455-545 (636)
31 2wfh_A SLIT homolog 2 protein 99.3 1.1E-11 3.9E-16 111.3 13.0 118 5-139 13-138 (193)
32 3zyi_A Leucine-rich repeat-con 99.3 9.8E-12 3.4E-16 125.6 13.5 138 1-140 98-255 (452)
33 2xot_A Amphoterin-induced prot 99.3 8.5E-12 2.9E-16 122.6 12.6 136 5-143 21-179 (361)
34 3rgz_A Protein brassinosteroid 99.3 3.3E-12 1.1E-16 137.8 10.4 138 3-140 369-527 (768)
35 2ft3_A Biglycan; proteoglycan, 99.3 9.5E-12 3.3E-16 120.4 12.0 83 57-143 173-257 (332)
36 2o6s_A Variable lymphocyte rec 99.3 2.7E-11 9.1E-16 109.3 14.1 119 6-140 11-137 (208)
37 1wwl_A Monocyte differentiatio 99.3 5.3E-12 1.8E-16 121.4 10.0 141 1-143 94-269 (312)
38 3vq2_A TLR4, TOLL-like recepto 99.3 6.6E-12 2.3E-16 130.9 11.3 140 1-142 349-512 (606)
39 1m9s_A Internalin B; cell inva 99.3 1.1E-11 3.8E-16 130.5 13.1 142 1-150 42-198 (605)
40 3e6j_A Variable lymphocyte rec 99.3 2.1E-11 7.1E-16 112.3 13.4 124 2-140 40-172 (229)
41 1a9n_A U2A', U2A'; complex (nu 99.3 2.4E-12 8.3E-17 113.5 6.7 121 2-140 19-153 (176)
42 4eco_A Uncharacterized protein 99.3 9.3E-12 3.2E-16 131.6 12.4 142 2-144 402-583 (636)
43 1h6t_A Internalin B; cell adhe 99.3 8.6E-12 2.9E-16 119.1 11.0 135 1-143 67-216 (291)
44 4ecn_A Leucine-rich repeat pro 99.3 4.9E-12 1.7E-16 138.3 10.5 137 1-140 490-657 (876)
45 1xku_A Decorin; proteoglycan, 99.3 1.9E-11 6.5E-16 118.0 12.9 138 1-143 75-232 (330)
46 4ecn_A Leucine-rich repeat pro 99.3 2E-11 6.8E-16 133.5 14.3 81 54-136 695-785 (876)
47 4ezg_A Putative uncharacterize 99.3 1.2E-11 4E-16 111.0 10.1 93 53-147 63-157 (197)
48 2z80_A TOLL-like receptor 2, v 99.3 7.7E-12 2.6E-16 122.0 9.3 134 6-141 35-188 (353)
49 2z81_A CD282 antigen, TOLL-lik 99.3 3.1E-11 1E-15 124.2 14.1 117 19-143 361-489 (549)
50 1wwl_A Monocyte differentiatio 99.3 1.9E-11 6.5E-16 117.5 11.7 125 18-143 94-244 (312)
51 2z62_A TOLL-like receptor 4, v 99.3 1.7E-11 5.7E-16 115.4 11.0 117 24-142 33-164 (276)
52 4g8a_A TOLL-like receptor 4; l 99.3 1.5E-11 5.2E-16 127.7 11.5 127 14-142 42-188 (635)
53 3zyi_A Leucine-rich repeat-con 99.3 4.4E-11 1.5E-15 120.8 14.4 122 24-146 80-215 (452)
54 3vq2_A TLR4, TOLL-like recepto 99.3 3.2E-11 1.1E-15 125.7 13.3 135 5-141 14-167 (606)
55 3bz5_A Internalin-J, INLJ; leu 99.2 4.7E-11 1.6E-15 121.4 14.1 131 1-143 41-186 (457)
56 4b8c_D Glucose-repressible alc 99.2 9.9E-12 3.4E-16 133.5 9.5 92 48-141 239-330 (727)
57 2z80_A TOLL-like receptor 2, v 99.2 2.2E-11 7.6E-16 118.8 11.1 85 51-137 71-159 (353)
58 1xku_A Decorin; proteoglycan, 99.2 5.5E-11 1.9E-15 114.7 13.8 138 1-143 99-256 (330)
59 3zyj_A Leucine-rich repeat-con 99.2 4.4E-11 1.5E-15 120.4 13.6 93 51-144 107-202 (440)
60 4fmz_A Internalin; leucine ric 99.2 4.8E-11 1.6E-15 115.6 13.2 138 1-145 43-195 (347)
61 4glp_A Monocyte differentiatio 99.2 1E-11 3.5E-16 119.2 8.4 140 2-143 91-267 (310)
62 3o6n_A APL1; leucine-rich repe 99.2 5.1E-11 1.7E-15 117.7 13.5 46 99-144 244-289 (390)
63 2z62_A TOLL-like receptor 4, v 99.2 3.4E-11 1.2E-15 113.3 11.6 139 2-143 28-193 (276)
64 4fmz_A Internalin; leucine ric 99.2 5.6E-11 1.9E-15 115.1 13.1 134 1-141 154-301 (347)
65 3o53_A Protein LRIM1, AGAP0063 99.2 1.7E-11 5.9E-16 118.1 9.3 137 1-141 79-228 (317)
66 3oja_B Anopheles plasmodium-re 99.2 4.4E-11 1.5E-15 125.3 13.1 142 1-144 74-295 (597)
67 2z7x_B TOLL-like receptor 1, v 99.2 5.8E-11 2E-15 121.5 13.7 140 2-144 302-461 (520)
68 2o6r_A Variable lymphocyte rec 99.2 1.1E-10 3.9E-15 102.5 13.7 122 4-141 9-138 (177)
69 1m9s_A Internalin B; cell inva 99.2 3.5E-11 1.2E-15 126.7 12.0 134 1-142 64-212 (605)
70 3o6n_A APL1; leucine-rich repe 99.2 3.7E-11 1.3E-15 118.7 11.2 117 24-143 210-334 (390)
71 3v47_A TOLL-like receptor 5B a 99.2 5.9E-11 2E-15 119.2 12.5 95 48-143 291-387 (455)
72 3cvr_A Invasion plasmid antige 99.2 4.7E-11 1.6E-15 124.8 12.0 127 2-144 80-224 (571)
73 2je0_A Acidic leucine-rich nuc 99.2 1.1E-11 3.9E-16 105.8 6.1 88 53-143 39-129 (149)
74 4glp_A Monocyte differentiatio 99.2 2.1E-11 7.3E-16 117.0 8.3 144 1-148 116-293 (310)
75 2xwt_C Thyrotropin receptor; s 99.2 5.7E-11 2E-15 109.4 10.8 130 12-143 20-172 (239)
76 2v9t_B SLIT homolog 2 protein 99.2 6.8E-11 2.3E-15 108.2 11.2 123 2-140 32-165 (220)
77 2id5_A Lingo-1, leucine rich r 99.2 8.7E-11 3E-15 119.0 13.0 111 1-112 55-185 (477)
78 1dce_A Protein (RAB geranylger 99.2 5.2E-11 1.8E-15 124.5 11.5 104 22-143 444-549 (567)
79 1xeu_A Internalin C; cellular 99.2 1.6E-11 5.6E-16 115.6 6.7 125 4-150 21-151 (263)
80 2ft3_A Biglycan; proteoglycan, 99.2 1E-10 3.6E-15 113.0 12.6 133 3-140 34-185 (332)
81 3v47_A TOLL-like receptor 5B a 99.2 9.1E-11 3.1E-15 117.8 12.6 85 56-142 275-362 (455)
82 2z63_A TOLL-like receptor 4, v 99.2 5.1E-11 1.7E-15 122.8 11.0 142 1-143 346-510 (570)
83 2id5_A Lingo-1, leucine rich r 99.2 1.4E-10 4.9E-15 117.4 13.2 137 1-139 127-284 (477)
84 3oja_A Leucine-rich immune mol 99.2 5.1E-11 1.8E-15 122.0 9.7 139 1-143 79-230 (487)
85 2z7x_B TOLL-like receptor 1, v 99.2 7E-11 2.4E-15 120.9 10.8 139 1-144 275-438 (520)
86 1ziw_A TOLL-like receptor 3; i 99.2 1.4E-10 4.8E-15 122.6 13.3 134 6-141 8-159 (680)
87 3a79_B TLR6, VLRB.59, TOLL-lik 99.2 1.6E-10 5.4E-15 119.9 13.3 139 3-144 332-490 (562)
88 2z63_A TOLL-like receptor 4, v 99.2 7E-11 2.4E-15 121.8 10.3 142 1-142 324-485 (570)
89 2o6s_A Variable lymphocyte rec 99.2 4E-10 1.4E-14 101.5 14.0 123 2-140 28-161 (208)
90 2xot_A Amphoterin-induced prot 99.2 8E-11 2.7E-15 115.7 9.8 136 2-140 39-202 (361)
91 3oja_B Anopheles plasmodium-re 99.1 1.1E-10 3.6E-15 122.4 11.2 125 2-141 51-185 (597)
92 2v70_A SLIT-2, SLIT homolog 2 99.1 1.4E-10 4.9E-15 106.0 10.6 122 3-140 33-166 (220)
93 3t6q_A CD180 antigen; protein- 99.1 2.2E-10 7.5E-15 119.3 13.1 137 3-141 255-414 (606)
94 3g06_A SSPH2 (leucine-rich rep 99.1 2.1E-10 7.1E-15 121.1 12.9 77 56-143 201-277 (622)
95 3cvr_A Invasion plasmid antige 99.1 2.5E-10 8.6E-15 119.3 13.3 127 3-144 60-197 (571)
96 3bz5_A Internalin-J, INLJ; leu 99.1 3.5E-10 1.2E-14 114.9 13.9 130 1-142 63-206 (457)
97 2z81_A CD282 antigen, TOLL-lik 99.1 5.3E-11 1.8E-15 122.4 7.9 134 3-137 27-182 (549)
98 1o6v_A Internalin A; bacterial 99.1 4.1E-10 1.4E-14 114.1 14.2 142 1-149 198-353 (466)
99 1dce_A Protein (RAB geranylger 99.1 1E-10 3.4E-15 122.3 10.0 82 57-142 442-523 (567)
100 2ell_A Acidic leucine-rich nuc 99.1 1.6E-10 5.5E-15 100.6 9.7 109 19-144 24-137 (168)
101 1jl5_A Outer protein YOPM; leu 99.1 3.2E-10 1.1E-14 115.2 13.3 130 2-143 111-253 (454)
102 2r9u_A Variable lymphocyte rec 99.1 2.8E-10 9.4E-15 100.5 11.1 100 24-141 17-119 (174)
103 1jl5_A Outer protein YOPM; leu 99.1 4.3E-10 1.5E-14 114.2 14.0 130 3-143 72-211 (454)
104 3oja_A Leucine-rich immune mol 99.1 2.8E-11 9.4E-16 124.0 4.7 137 1-143 57-207 (487)
105 1o6v_A Internalin A; bacterial 99.1 4.5E-10 1.5E-14 113.8 13.6 140 1-148 176-330 (466)
106 3g39_A Variable lymphocyte rec 99.1 3.3E-10 1.1E-14 99.5 10.9 99 24-140 14-115 (170)
107 3t6q_A CD180 antigen; protein- 99.1 3.3E-10 1.1E-14 118.0 12.8 141 1-142 349-515 (606)
108 1ziw_A TOLL-like receptor 3; i 99.1 5.7E-10 1.9E-14 117.9 14.7 141 1-143 404-576 (680)
109 2je0_A Acidic leucine-rich nuc 99.1 1.1E-10 3.9E-15 99.5 7.7 117 2-135 17-148 (149)
110 3a79_B TLR6, VLRB.59, TOLL-lik 99.1 3.4E-10 1.2E-14 117.4 12.4 120 21-143 333-466 (562)
111 3o53_A Protein LRIM1, AGAP0063 99.1 3.5E-11 1.2E-15 115.9 4.6 136 1-142 57-206 (317)
112 3g06_A SSPH2 (leucine-rich rep 99.1 5.2E-10 1.8E-14 118.1 13.7 57 80-144 202-258 (622)
113 4g8a_A TOLL-like receptor 4; l 99.1 3.7E-10 1.3E-14 117.2 12.4 91 49-141 462-556 (635)
114 2wfh_A SLIT homolog 2 protein 99.1 5.6E-10 1.9E-14 100.1 10.9 103 23-143 14-118 (193)
115 3j0a_A TOLL-like receptor 5; m 99.0 5.4E-10 1.8E-14 121.7 11.6 131 7-140 9-161 (844)
116 4b8c_D Glucose-repressible alc 99.0 2.1E-10 7.3E-15 123.2 7.8 94 48-143 216-309 (727)
117 3j0a_A TOLL-like receptor 5; m 99.0 9.7E-10 3.3E-14 119.7 13.0 110 2-113 24-158 (844)
118 1w8a_A SLIT protein; signaling 99.0 1.2E-09 4.2E-14 97.6 10.3 102 23-142 12-117 (192)
119 1a9n_A U2A', U2A'; complex (nu 99.0 5.9E-10 2E-14 98.0 7.7 110 18-144 18-130 (176)
120 4ay9_X Follicle-stimulating ho 99.0 9.8E-10 3.4E-14 107.3 9.8 140 2-143 30-218 (350)
121 2r9u_A Variable lymphocyte rec 99.0 2.7E-09 9.1E-14 94.1 11.2 101 4-120 14-121 (174)
122 3g39_A Variable lymphocyte rec 99.0 2.2E-09 7.6E-14 94.1 10.4 95 4-113 11-112 (170)
123 2ast_B S-phase kinase-associat 98.9 1.5E-10 5.2E-15 111.4 0.6 137 2-138 70-233 (336)
124 2ca6_A RAN GTPase-activating p 98.9 4.2E-10 1.4E-14 111.0 3.1 137 2-140 32-229 (386)
125 1ds9_A Outer arm dynein; leuci 98.9 3.5E-11 1.2E-15 108.0 -4.7 103 21-141 50-154 (198)
126 2o6r_A Variable lymphocyte rec 98.9 1.3E-08 4.3E-13 89.3 11.6 103 23-143 11-116 (177)
127 2ca6_A RAN GTPase-activating p 98.9 6.3E-10 2.1E-14 109.8 2.9 139 1-141 93-288 (386)
128 1ds9_A Outer arm dynein; leuci 98.9 9.6E-11 3.3E-15 105.1 -2.9 122 1-141 47-186 (198)
129 2ifg_A High affinity nerve gro 98.8 1.1E-08 3.6E-13 99.3 10.7 101 24-141 13-117 (347)
130 2ast_B S-phase kinase-associat 98.8 3.9E-10 1.3E-14 108.6 0.4 134 4-137 49-205 (336)
131 4ay9_X Follicle-stimulating ho 98.8 2.2E-08 7.4E-13 97.7 10.0 137 5-143 12-170 (350)
132 3goz_A Leucine-rich repeat-con 98.6 1.7E-08 5.8E-13 98.8 2.7 137 2-140 80-266 (362)
133 3goz_A Leucine-rich repeat-con 98.6 2.1E-08 7.1E-13 98.2 3.2 84 56-141 109-210 (362)
134 2ifg_A High affinity nerve gro 98.5 1.9E-07 6.6E-12 90.3 8.1 83 59-143 11-96 (347)
135 1z7x_W Ribonuclease inhibitor; 98.4 2.3E-08 8E-13 100.2 -0.1 65 48-113 276-351 (461)
136 1z7x_W Ribonuclease inhibitor; 98.4 3E-08 1E-12 99.4 0.3 138 2-141 142-327 (461)
137 3ogk_B Coronatine-insensitive 98.3 2.8E-07 9.7E-12 95.2 3.8 34 54-87 218-251 (592)
138 3ogk_B Coronatine-insensitive 98.2 5.4E-07 1.9E-11 93.1 4.4 113 1-114 163-304 (592)
139 3sb4_A Hypothetical leucine ri 98.2 3.2E-06 1.1E-10 81.4 9.1 85 55-143 225-313 (329)
140 3un9_A NLR family member X1; l 98.1 4.5E-07 1.5E-11 89.6 1.1 137 2-141 72-253 (372)
141 2p1m_B Transport inhibitor res 98.1 1.2E-06 4.2E-11 90.4 3.5 36 54-89 154-194 (594)
142 2p1m_B Transport inhibitor res 98.0 5.3E-07 1.8E-11 93.1 -0.4 122 2-137 66-221 (594)
143 3sb4_A Hypothetical leucine ri 97.8 5.2E-05 1.8E-09 72.8 9.3 100 18-134 225-328 (329)
144 3rw6_A Nuclear RNA export fact 97.8 3.7E-06 1.3E-10 79.3 1.0 79 53-133 167-257 (267)
145 3e4g_A ATP synthase subunit S, 97.6 4E-05 1.4E-09 67.7 4.0 83 56-138 61-150 (176)
146 3un9_A NLR family member X1; l 97.6 1.3E-05 4.3E-10 79.1 0.8 113 2-117 101-252 (372)
147 2ra8_A Uncharacterized protein 97.5 7.9E-05 2.7E-09 73.3 5.6 13 17-29 170-182 (362)
148 1io0_A Tropomodulin; LRR prote 97.2 9.3E-05 3.2E-09 65.4 2.2 84 54-139 63-163 (185)
149 3rw6_A Nuclear RNA export fact 97.2 0.00018 6.2E-09 67.7 3.7 80 17-109 168-257 (267)
150 4fdw_A Leucine rich hypothetic 97.2 0.0023 7.8E-08 63.5 11.8 78 56-137 248-333 (401)
151 1io0_A Tropomodulin; LRR prote 97.2 0.00016 5.4E-09 63.9 2.8 101 2-113 36-161 (185)
152 3e4g_A ATP synthase subunit S, 97.2 0.00022 7.5E-09 62.9 3.6 82 24-118 66-154 (176)
153 4fdw_A Leucine rich hypothetic 96.7 0.0073 2.5E-07 59.8 10.7 77 56-138 203-282 (401)
154 2ra8_A Uncharacterized protein 96.7 0.0014 4.8E-08 64.3 5.1 85 53-140 169-265 (362)
155 3rfe_A Platelet glycoprotein I 95.2 0.033 1.1E-06 46.1 6.2 50 60-112 12-64 (130)
156 3rfe_A Platelet glycoprotein I 94.9 0.041 1.4E-06 45.5 5.8 55 82-140 11-68 (130)
157 4fs7_A Uncharacterized protein 92.0 0.64 2.2E-05 45.1 9.7 54 77-134 295-350 (394)
158 4fs7_A Uncharacterized protein 91.3 0.37 1.3E-05 46.8 7.3 79 53-136 294-375 (394)
159 4gt6_A Cell surface protein; l 91.3 0.52 1.8E-05 45.7 8.3 79 52-135 261-342 (394)
160 4gt6_A Cell surface protein; l 90.3 0.64 2.2E-05 45.1 7.8 81 53-138 285-368 (394)
161 4h09_A Hypothetical leucine ri 87.8 1 3.6E-05 43.1 7.3 82 52-137 236-320 (379)
162 1pgv_A TMD-1, tropomodulin TMD 85.8 0.88 3E-05 40.4 5.0 83 55-138 69-168 (197)
163 4h09_A Hypothetical leucine ri 84.3 3.2 0.00011 39.6 8.7 87 52-143 213-302 (379)
164 1pgv_A TMD-1, tropomodulin TMD 77.9 1.1 3.6E-05 39.8 2.5 83 53-137 38-136 (197)
No 1
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.69 E-value=3.4e-16 Score=152.40 Aligned_cols=136 Identities=30% Similarity=0.423 Sum_probs=84.6
Q ss_pred CCCcEEeccCCCCCccCCCcc-------eEEeecCCccccchhhhhhhccc----------cccCccCCC---------C
Q 015983 2 KSLKTLVLSGCLKLKKFPDIV-------QVLWDGTDIRELSFAIELLFRLV----------QEFPEKTSS---------K 55 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP~~~-------~L~Ls~n~l~~Lp~si~~L~~L~----------~~~P~~l~~---------l 55 (397)
++|++|+|++| .+..+|... .|+|++|.++.+|..++.+++|+ +.+|..+.. +
T Consensus 104 ~~L~~L~L~~n-~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l 182 (328)
T 4fcg_A 104 SHLQHMTIDAA-GLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL 182 (328)
T ss_dssp TTCSEEEEESS-CCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred CCCCEEECCCC-CccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence 45666666665 233444322 26666666666666666555554 344544432 6
Q ss_pred CCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECC
Q 015983 56 DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVET 135 (397)
Q Consensus 56 ~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls 135 (397)
++|++|+|++|.++.+|..++.+++|+.|+|++ +.+..+|..+..+++|++|++++|+..+.+|..++.+++|+.|+++
T Consensus 183 ~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~-N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 183 VNLQSLRLEWTGIRSLPASIANLQNLKSLKIRN-SPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp TTCCEEEEEEECCCCCCGGGGGCTTCCEEEEES-SCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred CCCCEEECcCCCcCcchHhhcCCCCCCEEEccC-CCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 666667776666666666666666777777766 4566666666666677777777666666666666666667777766
Q ss_pred CCcc
Q 015983 136 VTKF 139 (397)
Q Consensus 136 ~n~~ 139 (397)
+|++
T Consensus 262 ~n~~ 265 (328)
T 4fcg_A 262 DCSN 265 (328)
T ss_dssp TCTT
T ss_pred CCCc
Confidence 6654
No 2
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.60 E-value=3.7e-15 Score=145.02 Aligned_cols=140 Identities=21% Similarity=0.297 Sum_probs=119.4
Q ss_pred CCCCcEEeccCCCCCccCCCc-------ceEEeecCC-ccccchhhhh---------hhccc---------cccCccCCC
Q 015983 1 MKSLKTLVLSGCLKLKKFPDI-------VQVLWDGTD-IRELSFAIEL---------LFRLV---------QEFPEKTSS 54 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP~~-------~~L~Ls~n~-l~~Lp~si~~---------L~~L~---------~~~P~~l~~ 54 (397)
|++|++|+|++| .+..+|.. ..|+|++|. +..+|..+.. +++|+ ..+|..++.
T Consensus 126 l~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~ 204 (328)
T 4fcg_A 126 FAGLETLTLARN-PLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN 204 (328)
T ss_dssp GTTCSEEEEESC-CCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGG
T ss_pred cCCCCEEECCCC-ccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcC
Confidence 468999999998 45566643 338999854 4577876543 55554 578888899
Q ss_pred CCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEEC
Q 015983 55 KDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVE 134 (397)
Q Consensus 55 l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~l 134 (397)
+++|++|+|++|.++.+|..++.+++|+.|+|++|+....+|..++.+++|++|+|++|+.++.+|..++.+++|+.|++
T Consensus 205 l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 205 LQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp CTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred CCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999999999999
Q ss_pred CCCcccc
Q 015983 135 TVTKFAK 141 (397)
Q Consensus 135 s~n~~~~ 141 (397)
++|++..
T Consensus 285 ~~n~~~~ 291 (328)
T 4fcg_A 285 RGCVNLS 291 (328)
T ss_dssp TTCTTCC
T ss_pred CCCCchh
Confidence 9987643
No 3
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.44 E-value=7.7e-13 Score=126.47 Aligned_cols=139 Identities=23% Similarity=0.269 Sum_probs=110.0
Q ss_pred CCCcEEeccCCCC-------CccCCCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983 2 KSLKTLVLSGCLK-------LKKFPDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG 65 (397)
Q Consensus 2 ~sL~~L~LsgC~~-------L~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~ 65 (397)
++|+.|+|++|.. +..++.+..|+|++|.|+.++.. ..+++|+ ..+|..+..+++|++|+|++
T Consensus 31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~ 109 (290)
T 1p9a_G 31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSF 109 (290)
T ss_dssp TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCS
T ss_pred CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCC
Confidence 4688899998842 22344455588999888887754 4444444 56777788899999999999
Q ss_pred CCCCcCCc-cccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCccccc
Q 015983 66 TAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAKA 142 (397)
Q Consensus 66 ~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L 142 (397)
|.|+.+|. .+..+++|+.|+|++ +.+..+|. .+..+++|+.|+|++ +.+..+|. .+..+++|+.|++++|.++.+
T Consensus 110 N~l~~l~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i 187 (290)
T 1p9a_G 110 NRLTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLAN-NNLTELPAGLLNGLENLDTLLLQENSLYTI 187 (290)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTT-SCCCCCCTTTTTTCTTCCEEECTT-SCCSCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CcCcccCHHHHcCCCCCCEEECCC-CCCCccChhhcccccCCCEEECCC-CcCCccCHHHhcCcCCCCEEECCCCcCCcc
Confidence 99999884 589999999999999 67888876 467899999999999 47788876 457899999999999988765
Q ss_pred c
Q 015983 143 E 143 (397)
Q Consensus 143 ~ 143 (397)
+
T Consensus 188 p 188 (290)
T 1p9a_G 188 P 188 (290)
T ss_dssp C
T ss_pred C
Confidence 4
No 4
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.44 E-value=1.1e-12 Score=120.35 Aligned_cols=123 Identities=18% Similarity=0.223 Sum_probs=77.6
Q ss_pred cEEeccCCCCCccCCCcce-----EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc-cccCC
Q 015983 5 KTLVLSGCLKLKKFPDIVQ-----VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA-SIELL 78 (397)
Q Consensus 5 ~~L~LsgC~~L~~lP~~~~-----L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~-si~~L 78 (397)
+.|+++++ .++.+|.... |+|++|.|+.++.. ..+..+++|++|+|++|.|+.++. .+..+
T Consensus 14 ~~l~~s~n-~l~~iP~~~~~~~~~L~L~~N~l~~~~~~------------~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l 80 (220)
T 2v70_A 14 TTVDCSNQ-KLNKIPEHIPQYTAELRLNNNEFTVLEAT------------GIFKKLPQLRKINFSNNKITDIEEGAFEGA 80 (220)
T ss_dssp TEEECCSS-CCSSCCSCCCTTCSEEECCSSCCCEECCC------------CCGGGCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CEeEeCCC-CcccCccCCCCCCCEEEcCCCcCCccCch------------hhhccCCCCCEEECCCCcCCEECHHHhCCC
Confidence 57888886 6777875432 89999999887431 112445566666666666666654 46666
Q ss_pred CCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccC-CcccCCCCCCcEEECCCCccccc
Q 015983 79 SGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNA-PETLGKVESLESAVETVTKFAKA 142 (397)
Q Consensus 79 ~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~~L~ls~n~~~~L 142 (397)
++|+.|+|++ +.+..+|. .+.++++|++|+|++| .+..+ |..+..+++|+.|++++|.++.+
T Consensus 81 ~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 81 SGVNEILLTS-NRLENVQHKMFKGLESLKTLMLRSN-RITCVGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp TTCCEEECCS-SCCCCCCGGGGTTCSSCCEEECTTS-CCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred CCCCEEECCC-CccCccCHhHhcCCcCCCEEECCCC-cCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence 6666666666 45555543 4666666666666664 33333 55566666666666666665543
No 5
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.43 E-value=1.8e-12 Score=120.75 Aligned_cols=138 Identities=22% Similarity=0.261 Sum_probs=109.1
Q ss_pred CCcEEeccCCCCCccCCCcc-----eEEeecCCccccch-hhhhhhccc----------cccCccCCCCCCCCEEEeeCC
Q 015983 3 SLKTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSF-AIELLFRLV----------QEFPEKTSSKDQLLEIHLEGT 66 (397)
Q Consensus 3 sL~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~~ 66 (397)
+.+.++++++ .++.+|... .|+|++|.++.++. .+..+++|+ ...|..+..+++|++|+|++|
T Consensus 15 ~~~~l~~~~~-~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 15 GKKEVDCQGK-SLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GGTEEECTTC-CCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CCeEEecCCC-CccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4567888886 677777533 38888888887765 456666655 334455788999999999999
Q ss_pred CCCcCCc-cccCCCCCCEEEecCCCCCCCCChh-ccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcccccc
Q 015983 67 AIRGLPA-SIELLSGNVLLNLKDRKNLKSLPST-INGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 67 ~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~~-i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
.|+.+|. .+..+++|+.|+|++ +.+..+|.. +..+++|++|+|++| .+..+|. .++.+++|+.|++++|.++.++
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTN-QLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cccccChhHhcccCCCCEEEcCC-CcCCCcChhHhccCCcccEEECcCC-cCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 9998885 478999999999999 688888764 688999999999995 7777775 6888999999999999887654
No 6
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.43 E-value=1.4e-12 Score=123.41 Aligned_cols=138 Identities=21% Similarity=0.331 Sum_probs=100.1
Q ss_pred CCCcEEeccCCCCCcc--------CCCcceEEeecCCcccc-chhhhhhhccc----------ccc-CccCCCCCCCCEE
Q 015983 2 KSLKTLVLSGCLKLKK--------FPDIVQVLWDGTDIREL-SFAIELLFRLV----------QEF-PEKTSSKDQLLEI 61 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~--------lP~~~~L~Ls~n~l~~L-p~si~~L~~L~----------~~~-P~~l~~l~~L~~L 61 (397)
++|+.|+|++|. ++. ++.+..|+|++|.++.+ |..+..+++|+ ..+ |..+..+++|++|
T Consensus 32 ~~l~~L~l~~n~-i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNR-ISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCc-CCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 468888888873 333 33444488888888877 55666666654 222 5567778888888
Q ss_pred EeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCc
Q 015983 62 HLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTK 138 (397)
Q Consensus 62 ~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~ 138 (397)
+|++|.++.+ |..+..+++|+.|++++ +.+..+|. .+..+++|++|++++| .+..+|. .+..+++|+.|++++|.
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~ 188 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQD-NALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNR 188 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCC-CcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCc
Confidence 8888888876 45578888888888888 56777764 4778888888888884 5666664 47778888888888887
Q ss_pred cccc
Q 015983 139 FAKA 142 (397)
Q Consensus 139 ~~~L 142 (397)
++.+
T Consensus 189 l~~~ 192 (285)
T 1ozn_A 189 VAHV 192 (285)
T ss_dssp CCEE
T ss_pred cccc
Confidence 7653
No 7
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.43 E-value=4.3e-13 Score=120.51 Aligned_cols=129 Identities=15% Similarity=0.171 Sum_probs=89.1
Q ss_pred CCCcEEeccCCCCCccCCC------cceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCc-CCcc
Q 015983 2 KSLKTLVLSGCLKLKKFPD------IVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRG-LPAS 74 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP~------~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~-lP~s 74 (397)
++|+.|+|++| .++.+|. +..|++++|.++.++ . +..+++|++|+|++|.++. .|..
T Consensus 44 ~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~l~~n~~~~~~-~--------------l~~l~~L~~L~l~~n~l~~~~~~~ 107 (197)
T 4ezg_A 44 NSLTYITLANI-NVTDLTGIEYAHNIKDLTINNIHATNYN-P--------------ISGLSNLERLRIMGKDVTSDKIPN 107 (197)
T ss_dssp HTCCEEEEESS-CCSCCTTGGGCTTCSEEEEESCCCSCCG-G--------------GTTCTTCCEEEEECTTCBGGGSCC
T ss_pred CCccEEeccCC-CccChHHHhcCCCCCEEEccCCCCCcch-h--------------hhcCCCCCEEEeECCccCcccChh
Confidence 46788888887 4445443 333888888666554 2 3567778888888887774 6677
Q ss_pred ccCCCCCCEEEecCCCCCCC-CChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccccC
Q 015983 75 IELLSGNVLLNLKDRKNLKS-LPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIAQK 148 (397)
Q Consensus 75 i~~L~~L~~L~Ls~c~~l~~-LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~~l 148 (397)
++.+++|+.|++++| .+.. .|..+..+++|++|++++|..+..+| .+..+++|+.|++++|.++.++.+..+
T Consensus 108 l~~l~~L~~L~Ls~n-~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~~l~~l 180 (197)
T 4ezg_A 108 LSGLTSLTLLDISHS-AHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIEDF 180 (197)
T ss_dssp CTTCTTCCEEECCSS-BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCTTGGGC
T ss_pred hcCCCCCCEEEecCC-ccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChHHhccC
Confidence 777888888888874 4543 56667778888888888865577776 467777788888888877665544433
No 8
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.41 E-value=1.9e-12 Score=123.73 Aligned_cols=139 Identities=20% Similarity=0.225 Sum_probs=106.5
Q ss_pred CCCCcEEeccCCCCCccCCCcc-----eEEeecCCccccc-hhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983 1 MKSLKTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELS-FAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG 65 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp-~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~ 65 (397)
+++|+.|+++++ .++.+|... .|+|++|.++.++ ..+..+++|+ ..+|.. +.+++|++|+|++
T Consensus 9 l~~l~~l~~~~~-~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~Ls~ 86 (290)
T 1p9a_G 9 VASHLEVNCDKR-NLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLDLSH 86 (290)
T ss_dssp STTCCEEECTTS-CCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEECCS
T ss_pred cCCccEEECCCC-CCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEECCC
Confidence 468999999996 677887533 3999999999875 4566666665 334443 6788888888888
Q ss_pred CCCCcCCccccCCCCCCEEEecCCCCCCCCC-hhccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcccccc
Q 015983 66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLP-STINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP-~~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
|.|+.+|..+..+++|+.|+|++ +.+..+| ..+.++++|++|+|++| .+..+|. .+..+++|+.|++++|.++.++
T Consensus 87 N~l~~l~~~~~~l~~L~~L~l~~-N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 87 NQLQSLPLLGQTLPALTVLDVSF-NRLTSLPLGALRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp SCCSSCCCCTTTCTTCCEEECCS-SCCCCCCSSTTTTCTTCCEEECTTS-CCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred CcCCcCchhhccCCCCCEEECCC-CcCcccCHHHHcCCCCCCEEECCCC-CCCccChhhcccccCCCEEECCCCcCCccC
Confidence 88888888888888888888888 5777776 46788888888888884 5666654 4677888888888888776654
No 9
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.40 E-value=3.2e-12 Score=120.29 Aligned_cols=139 Identities=24% Similarity=0.357 Sum_probs=111.5
Q ss_pred CCCcEEeccCCCCCccCC--------CcceEEeecCCccccchhh-hhhhccc---------cccC-ccCCCCCCCCEEE
Q 015983 2 KSLKTLVLSGCLKLKKFP--------DIVQVLWDGTDIRELSFAI-ELLFRLV---------QEFP-EKTSSKDQLLEIH 62 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP--------~~~~L~Ls~n~l~~Lp~si-~~L~~L~---------~~~P-~~l~~l~~L~~L~ 62 (397)
++|+.|+|++|. ++.+| .+..|+|++|.++.+|..+ ..+++|+ ..+| ..+..+++|++|+
T Consensus 37 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 115 (270)
T 2o6q_A 37 ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELR 115 (270)
T ss_dssp TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEE
T ss_pred CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEE
Confidence 368999999983 44444 3444999999999998765 5566665 3334 4568899999999
Q ss_pred eeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCChh-ccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcc
Q 015983 63 LEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPST-INGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKF 139 (397)
Q Consensus 63 Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~~-i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~ 139 (397)
|++|.++.+|.. ++.+++|+.|+|++ +.+..+|.. +..+++|+.|++++| .+..+|. .+..+++|+.|++++|.+
T Consensus 116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (270)
T 2o6q_A 116 LDRNQLKSLPPRVFDSLTKLTYLSLGY-NELQSLPKGVFDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQL 193 (270)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCccCeeCHHHhCcCcCCCEEECCC-CcCCccCHhHccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCcC
Confidence 999999988754 78999999999999 578888764 788999999999995 6777764 578899999999999988
Q ss_pred cccc
Q 015983 140 AKAE 143 (397)
Q Consensus 140 ~~L~ 143 (397)
+.++
T Consensus 194 ~~~~ 197 (270)
T 2o6q_A 194 KRVP 197 (270)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 7654
No 10
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.40 E-value=3e-12 Score=117.99 Aligned_cols=122 Identities=20% Similarity=0.264 Sum_probs=73.5
Q ss_pred cEEeccCCCCCccCCCcc-----eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc-ccCC
Q 015983 5 KTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS-IELL 78 (397)
Q Consensus 5 ~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s-i~~L 78 (397)
+.++.+++ .++.+|... .|+|++|.|+.++.. .+..+++|++|+|++|.|+.+|.. +..+
T Consensus 22 ~~v~c~~~-~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~-------------~~~~l~~L~~L~L~~N~l~~i~~~~~~~l 87 (229)
T 3e6j_A 22 TTVDCRSK-RHASVPAGIPTNAQILYLHDNQITKLEPG-------------VFDSLINLKELYLGSNQLGALPVGVFDSL 87 (229)
T ss_dssp TEEECTTS-CCSSCCSCCCTTCSEEECCSSCCCCCCTT-------------TTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CEeEccCC-CcCccCCCCCCCCCEEEcCCCccCccCHH-------------HhhCccCCcEEECCCCCCCCcChhhcccC
Confidence 45677764 577777532 388888888876432 224555666666666666666543 4566
Q ss_pred CCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccc
Q 015983 79 SGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKA 142 (397)
Q Consensus 79 ~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L 142 (397)
++|+.|+|++ +.+..+|. .+..+++|++|+|++ +.+..+|..+..+++|+.|++++|.++.+
T Consensus 88 ~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 150 (229)
T 3e6j_A 88 TQLTVLDLGT-NQLTVLPSAVFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQNQLKSI 150 (229)
T ss_dssp TTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSSCCCCC
T ss_pred CCcCEEECCC-CcCCccChhHhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCCcCCcc
Confidence 6666666666 45555544 245566666666666 34556666566666666666666655543
No 11
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.39 E-value=2.9e-12 Score=120.82 Aligned_cols=139 Identities=23% Similarity=0.353 Sum_probs=106.3
Q ss_pred CCCCcEEeccCCCCCcc------CCCcceEEeecCCccccchhhhhhhccc---------cc-cCccCCCCCCCCEEEee
Q 015983 1 MKSLKTLVLSGCLKLKK------FPDIVQVLWDGTDIRELSFAIELLFRLV---------QE-FPEKTSSKDQLLEIHLE 64 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~------lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~-~P~~l~~l~~L~~L~Ls 64 (397)
+++|+.|++++|. ++. +|.+..|+|++|.++.++ .+..+++|+ .. .|..+..+++|++|+|+
T Consensus 40 l~~L~~L~l~~~~-i~~~~~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 40 LNSIDQIIANNSD-IKSVQGIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HTTCCEEECTTSC-CCCCTTGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ccceeeeeeCCCC-cccccccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 3578889988873 333 444555899998888765 566666655 22 33446888999999999
Q ss_pred CCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcccc
Q 015983 65 GTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 65 ~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~ 141 (397)
+|.++.+|.. ++.+++|+.|+|++ +.+..+|. .+..+++|++|++++| .+..+|. .++.+++|+.|++++|.++.
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 195 (272)
T 3rfs_A 118 ENQLQSLPDGVFDKLTNLTYLNLAH-NQLQSLPKGVFDKLTNLTELDLSYN-QLQSLPEGVFDKLTQLKDLRLYQNQLKS 195 (272)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred CCcCCccCHHHhccCCCCCEEECCC-CccCccCHHHhccCccCCEEECCCC-CcCccCHHHhcCCccCCEEECCCCcCCc
Confidence 9999988765 78899999999998 47777765 4678999999999996 5666654 46889999999999998876
Q ss_pred cc
Q 015983 142 AE 143 (397)
Q Consensus 142 L~ 143 (397)
++
T Consensus 196 ~~ 197 (272)
T 3rfs_A 196 VP 197 (272)
T ss_dssp CC
T ss_pred cC
Confidence 44
No 12
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.39 E-value=1.3e-12 Score=140.83 Aligned_cols=141 Identities=18% Similarity=0.234 Sum_probs=111.1
Q ss_pred CCCCcEEeccCCCCCccCCC-------cceEEeecCCcc-ccchhhhhhhccc----------cccCccCCCCCCCCEEE
Q 015983 1 MKSLKTLVLSGCLKLKKFPD-------IVQVLWDGTDIR-ELSFAIELLFRLV----------QEFPEKTSSKDQLLEIH 62 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP~-------~~~L~Ls~n~l~-~Lp~si~~L~~L~----------~~~P~~l~~l~~L~~L~ 62 (397)
+++|+.|+|++|...+.+|. +..|+|++|.++ .+|..++.+++|+ +.+|..++.+++|++|+
T Consensus 465 l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 465 VKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLD 544 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEE
T ss_pred CCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEE
Confidence 46889999999865545554 333899999988 7788888877776 57888888899999999
Q ss_pred eeCCCCC-cCCcc-------------------------------------------------------------------
Q 015983 63 LEGTAIR-GLPAS------------------------------------------------------------------- 74 (397)
Q Consensus 63 Ls~~~i~-~lP~s------------------------------------------------------------------- 74 (397)
|++|.++ .+|..
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 9988776 45543
Q ss_pred ---ccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983 75 ---IELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 75 ---i~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~ 141 (397)
++.+++|+.|+|++|+....+|..++.+++|+.|+|++|...+.+|..++.+++|+.|++++|+++.
T Consensus 625 ~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g 694 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDG 694 (768)
T ss_dssp CCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEE
T ss_pred chhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccC
Confidence 3345778889999854445788889999999999999977667889989999999999999998763
No 13
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.39 E-value=2.5e-12 Score=122.83 Aligned_cols=139 Identities=14% Similarity=0.260 Sum_probs=104.4
Q ss_pred CCCcEEeccCCCCCccCC------CcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCC
Q 015983 2 KSLKTLVLSGCLKLKKFP------DIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGT 66 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP------~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~ 66 (397)
++|+.|++++| .++.+| .+..|+|++|.++.++. +..+++|+ ..+|. +..+++|++|+|++|
T Consensus 46 ~~L~~L~l~~~-~i~~~~~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n 122 (291)
T 1h6t_A 46 NSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHN 122 (291)
T ss_dssp HTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTS
T ss_pred CcccEEEccCC-CcccChhHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCC
Confidence 57899999998 455544 44449999999998887 66666665 33333 677888888888888
Q ss_pred CCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccc
Q 015983 67 AIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIA 146 (397)
Q Consensus 67 ~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~ 146 (397)
.++.++ .+..+++|+.|++++ +.+..+ ..+..+++|+.|++++| .+..++. +..+++|+.|++++|.++.++.+.
T Consensus 123 ~i~~~~-~l~~l~~L~~L~l~~-n~l~~~-~~l~~l~~L~~L~L~~N-~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~l~ 197 (291)
T 1h6t_A 123 GISDIN-GLVHLPQLESLYLGN-NKITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNHISDLRALA 197 (291)
T ss_dssp CCCCCG-GGGGCTTCCEEECCS-SCCCCC-GGGGGCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCBCGGGT
T ss_pred cCCCCh-hhcCCCCCCEEEccC-CcCCcc-hhhccCCCCCEEEccCC-ccccchh-hcCCCccCEEECCCCcCCCChhhc
Confidence 888774 577888888888888 567777 45778888888888885 6666665 778888888888888877766554
Q ss_pred cC
Q 015983 147 QK 148 (397)
Q Consensus 147 ~l 148 (397)
.+
T Consensus 198 ~l 199 (291)
T 1h6t_A 198 GL 199 (291)
T ss_dssp TC
T ss_pred cC
Confidence 33
No 14
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.39 E-value=3.5e-12 Score=122.72 Aligned_cols=140 Identities=15% Similarity=0.260 Sum_probs=110.8
Q ss_pred CCCcEEeccCCCCCccCCC------cceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCC
Q 015983 2 KSLKTLVLSGCLKLKKFPD------IVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGT 66 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP~------~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~ 66 (397)
++|+.|++++| .++.+|. +..|+|++|.++.++. +..+++|+ ..+| .+..+++|++|+|++|
T Consensus 41 ~~L~~L~l~~~-~i~~l~~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n 117 (308)
T 1h6u_A 41 DGITTLSAFGT-GVTTIEGVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTST 117 (308)
T ss_dssp HTCCEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTS
T ss_pred CCcCEEEeeCC-CccCchhhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCC
Confidence 57899999998 4555543 3349999999998887 77777665 3343 4678899999999999
Q ss_pred CCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccc
Q 015983 67 AIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIA 146 (397)
Q Consensus 67 ~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~ 146 (397)
.++.+|. +..+++|+.|++++ +.+..+|. +..+++|++|++++| .+..++. +..+++|+.|++++|.++.++.+.
T Consensus 118 ~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~ 192 (308)
T 1h6u_A 118 QITDVTP-LAGLSNLQVLYLDL-NQITNISP-LAGLTNLQYLSIGNA-QVSDLTP-LANLSKLTTLKADDNKISDISPLA 192 (308)
T ss_dssp CCCCCGG-GTTCTTCCEEECCS-SCCCCCGG-GGGCTTCCEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCCCGGGG
T ss_pred CCCCchh-hcCCCCCCEEECCC-CccCcCcc-ccCCCCccEEEccCC-cCCCChh-hcCCCCCCEEECCCCccCcChhhc
Confidence 9998875 88999999999998 57888876 788899999999985 6777766 788899999999999887766544
Q ss_pred cCC
Q 015983 147 QKD 149 (397)
Q Consensus 147 ~l~ 149 (397)
.++
T Consensus 193 ~l~ 195 (308)
T 1h6u_A 193 SLP 195 (308)
T ss_dssp GCT
T ss_pred CCC
Confidence 333
No 15
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.38 E-value=2.2e-12 Score=124.11 Aligned_cols=136 Identities=15% Similarity=0.229 Sum_probs=79.2
Q ss_pred CCCCcEEeccCCCCCcc------CCCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983 1 MKSLKTLVLSGCLKLKK------FPDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG 65 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~------lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~ 65 (397)
+++|+.|+|++| .+.. +|.+..|+|++|.++.+| .+..+++|+ ..+|. +..+++|++|+|++
T Consensus 62 l~~L~~L~L~~n-~i~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~ 138 (308)
T 1h6u_A 62 LNNLIGLELKDN-QITDLAPLKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL 138 (308)
T ss_dssp CTTCCEEECCSS-CCCCCGGGTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCS
T ss_pred cCCCCEEEccCC-cCCCChhHccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCC
Confidence 355666666666 2322 233333666666666654 344444443 22333 55666666666666
Q ss_pred CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccc
Q 015983 66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAEL 144 (397)
Q Consensus 66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~ 144 (397)
|.++.++. ++.+++|+.|+|++ +.+..+|. +..+++|+.|++++| .+..+|. +..+++|+.|++++|.++.++.
T Consensus 139 n~l~~~~~-l~~l~~L~~L~l~~-n~l~~~~~-l~~l~~L~~L~l~~n-~l~~~~~-l~~l~~L~~L~L~~N~l~~~~~ 212 (308)
T 1h6u_A 139 NQITNISP-LAGLTNLQYLSIGN-AQVSDLTP-LANLSKLTTLKADDN-KISDISP-LASLPNLIEVHLKNNQISDVSP 212 (308)
T ss_dssp SCCCCCGG-GGGCTTCCEEECCS-SCCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCCEEECTTSCCCBCGG
T ss_pred CccCcCcc-ccCCCCccEEEccC-CcCCCChh-hcCCCCCCEEECCCC-ccCcChh-hcCCCCCCEEEccCCccCcccc
Confidence 66666655 66666666666666 35666655 666666666666663 4555544 4566666666666666655443
No 16
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.38 E-value=1.6e-12 Score=113.36 Aligned_cols=123 Identities=21% Similarity=0.293 Sum_probs=71.7
Q ss_pred CCCcEEeccCCCCCc--cCCCcc-------eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCc-C
Q 015983 2 KSLKTLVLSGCLKLK--KFPDIV-------QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRG-L 71 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~--~lP~~~-------~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~-l 71 (397)
++|+.|+|++|. +. .+|... .|+|++|.++.+ . .+..+++|++|+|++|.++. +
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~--------------~~~~l~~L~~L~Ls~N~l~~~~ 87 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV-S--------------NLPKLPKLKKLELSENRIFGGL 87 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC-S--------------SCCCCSSCCEEEEESCCCCSCC
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh-h--------------hhccCCCCCEEECcCCcCchHH
Confidence 356666666663 33 444332 155555555543 1 13456666667777666665 5
Q ss_pred CccccCCCCCCEEEecCCCCCCCCC--hhccCCCcCceeeeecccCCccCCc----ccCCCCCCcEEECCCCccccc
Q 015983 72 PASIELLSGNVLLNLKDRKNLKSLP--STINGLRCLRMLHLSGCSKLKNAPE----TLGKVESLESAVETVTKFAKA 142 (397)
Q Consensus 72 P~si~~L~~L~~L~Ls~c~~l~~LP--~~i~~L~sL~~L~Ls~C~~L~~lP~----~~~~L~~L~~L~ls~n~~~~L 142 (397)
|..+..+++|+.|+|++ +.+..+| ..+..+++|++|++++| .+..+|. .+..+++|+.|++++|.+.++
T Consensus 88 ~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSG-NKLKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp CHHHHHCTTCCEEECBS-SSCCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred HHHHhhCCCCCEEeccC-CccCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 55555566677777766 4566655 45666666677776663 4555554 556666666666666655443
No 17
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.38 E-value=4.4e-12 Score=116.21 Aligned_cols=123 Identities=20% Similarity=0.259 Sum_probs=83.6
Q ss_pred cEEeccCCCCCccCCCc-----ceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcC-CccccCC
Q 015983 5 KTLVLSGCLKLKKFPDI-----VQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGL-PASIELL 78 (397)
Q Consensus 5 ~~L~LsgC~~L~~lP~~-----~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~l-P~si~~L 78 (397)
+.++++++ .++.+|.. ..|+|++|.|+.+|.. .+..+++|++|+|++|.|+.+ |..+..+
T Consensus 14 ~~v~c~~~-~l~~iP~~l~~~l~~L~l~~n~i~~i~~~-------------~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l 79 (220)
T 2v9t_B 14 NIVDCRGK-GLTEIPTNLPETITEIRLEQNTIKVIPPG-------------AFSPYKKLRRIDLSNNQISELAPDAFQGL 79 (220)
T ss_dssp TEEECTTS-CCSSCCSSCCTTCCEEECCSSCCCEECTT-------------SSTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred CEEEcCCC-CcCcCCCccCcCCCEEECCCCcCCCcCHh-------------HhhCCCCCCEEECCCCcCCCcCHHHhhCC
Confidence 45777775 67777753 3388888888877652 235666777777777777765 5567777
Q ss_pred CCCCEEEecCCCCCCCCChh-ccCCCcCceeeeecccCCccC-CcccCCCCCCcEEECCCCcccccc
Q 015983 79 SGNVLLNLKDRKNLKSLPST-INGLRCLRMLHLSGCSKLKNA-PETLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 79 ~~L~~L~Ls~c~~l~~LP~~-i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
++|+.|+|++ +.+..+|.. +.++++|++|+|++| .+..+ |..+..+++|+.|++++|.++.++
T Consensus 80 ~~L~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 144 (220)
T 2v9t_B 80 RSLNSLVLYG-NKITELPKSLFEGLFSLQLLLLNAN-KINCLRVDAFQDLHNLNLLSLYDNKLQTIA 144 (220)
T ss_dssp SSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCCCEEECCC-CcCCccCHhHccCCCCCCEEECCCC-CCCEeCHHHcCCCCCCCEEECCCCcCCEEC
Confidence 7777777777 567777653 466777777777774 44444 456677777777777777766543
No 18
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.38 E-value=4.3e-12 Score=118.16 Aligned_cols=135 Identities=21% Similarity=0.293 Sum_probs=78.2
Q ss_pred CCcEEeccCCCC-------CccCCCcceEEeecCCccccchh-hhhhhccc---------ccc-CccCCCCCCCCEEEee
Q 015983 3 SLKTLVLSGCLK-------LKKFPDIVQVLWDGTDIRELSFA-IELLFRLV---------QEF-PEKTSSKDQLLEIHLE 64 (397)
Q Consensus 3 sL~~L~LsgC~~-------L~~lP~~~~L~Ls~n~l~~Lp~s-i~~L~~L~---------~~~-P~~l~~l~~L~~L~Ls 64 (397)
+|+.|+|++|.. +..++.+..|+|++|.++.++.. +..+++|+ ..+ +..+..+++|++|+|+
T Consensus 36 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 115 (251)
T 3m19_A 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLG 115 (251)
T ss_dssp TCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcC
Confidence 466666666632 12223333366666666655443 34444443 222 2345566667777777
Q ss_pred CCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcc
Q 015983 65 GTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKF 139 (397)
Q Consensus 65 ~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~ 139 (397)
+|.|+.+|.. +..+++|+.|+|++ +.+..+|. .+..+++|++|+|++| .+..+|. .+..+++|+.|++++|++
T Consensus 116 ~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~ 191 (251)
T 3m19_A 116 GNQLKSLPSGVFDRLTKLKELRLNT-NQLQSIPAGAFDKLTNLQTLSLSTN-QLQSVPHGAFDRLGKLQTITLFGNQF 191 (251)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred CCcCCCcChhHhccCCcccEEECcC-CcCCccCHHHcCcCcCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCce
Confidence 7777666654 46666777777766 45666654 4666667777777663 4444443 456666677777766654
No 19
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.38 E-value=4.2e-12 Score=119.76 Aligned_cols=137 Identities=21% Similarity=0.336 Sum_probs=84.7
Q ss_pred CCCCcEEeccCCCCCcc------CCCcceEEeecCCccccchh-hhhhhccc---------ccc-CccCCCCCCCCEEEe
Q 015983 1 MKSLKTLVLSGCLKLKK------FPDIVQVLWDGTDIRELSFA-IELLFRLV---------QEF-PEKTSSKDQLLEIHL 63 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~------lP~~~~L~Ls~n~l~~Lp~s-i~~L~~L~---------~~~-P~~l~~l~~L~~L~L 63 (397)
+++|+.|+|++|. +.. ++.+..|+|++|.++.+|.. +..+++|+ ..+ |..++.+++|++|+|
T Consensus 62 l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 140 (272)
T 3rfs_A 62 LPNVRYLALGGNK-LHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNL 140 (272)
T ss_dssp CTTCCEEECTTSC-CCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCCcEEECCCCC-CCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEEC
Confidence 4567777777763 333 33333477777777766654 34555554 222 333566777777777
Q ss_pred eCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCccc
Q 015983 64 EGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 64 s~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~ 140 (397)
++|.++.+|.. ++.+++|+.|++++ +.+..+|. .+..+++|++|++++| .+..+| ..++.+++|+.|++++|.+.
T Consensus 141 ~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 218 (272)
T 3rfs_A 141 AHNQLQSLPKGVFDKLTNLTELDLSY-NQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 218 (272)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCccCccCHHHhccCccCCEEECCC-CCcCccCHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCCCcc
Confidence 77777766654 46777777777777 35666554 3466777777777774 344443 34567777777777777543
No 20
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.38 E-value=6.8e-13 Score=127.95 Aligned_cols=138 Identities=19% Similarity=0.253 Sum_probs=107.7
Q ss_pred CCCcEEeccCCCCCc--cCCC-------cceEEeec-CCcc-ccchhhhhhhccc----------cccCccCCCCCCCCE
Q 015983 2 KSLKTLVLSGCLKLK--KFPD-------IVQVLWDG-TDIR-ELSFAIELLFRLV----------QEFPEKTSSKDQLLE 60 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~--~lP~-------~~~L~Ls~-n~l~-~Lp~si~~L~~L~----------~~~P~~l~~l~~L~~ 60 (397)
.+++.|+|++|..-+ .+|. +..|+|++ |.+. .+|..++.+++|+ +.+|..+..+++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 367888998885433 4543 33388884 7777 6788888877776 467888888899999
Q ss_pred EEeeCCCCC-cCCccccCCCCCCEEEecCCCCCC-CCChhccCCC-cCceeeeecccCCccCCcccCCCCCCcEEECCCC
Q 015983 61 IHLEGTAIR-GLPASIELLSGNVLLNLKDRKNLK-SLPSTINGLR-CLRMLHLSGCSKLKNAPETLGKVESLESAVETVT 137 (397)
Q Consensus 61 L~Ls~~~i~-~lP~si~~L~~L~~L~Ls~c~~l~-~LP~~i~~L~-sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n 137 (397)
|+|++|.++ .+|..++.+++|+.|+|++ +.+. .+|..+..++ +|++|++++|.....+|..+..+. |+.|++++|
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDG-NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCS-SCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcC-CcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999888 7888888899999999988 4565 7888888887 889999998655557888887776 888888888
Q ss_pred cccc
Q 015983 138 KFAK 141 (397)
Q Consensus 138 ~~~~ 141 (397)
.++.
T Consensus 208 ~l~~ 211 (313)
T 1ogq_A 208 MLEG 211 (313)
T ss_dssp EEEE
T ss_pred cccC
Confidence 7764
No 21
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.37 E-value=7.2e-12 Score=117.90 Aligned_cols=138 Identities=22% Similarity=0.289 Sum_probs=112.8
Q ss_pred CCcEEeccCCCCCccCCCc-----ceEEeecCCccccch-hhhhhhccc---------cccCc-cCCCCCCCCEEEeeCC
Q 015983 3 SLKTLVLSGCLKLKKFPDI-----VQVLWDGTDIRELSF-AIELLFRLV---------QEFPE-KTSSKDQLLEIHLEGT 66 (397)
Q Consensus 3 sL~~L~LsgC~~L~~lP~~-----~~L~Ls~n~l~~Lp~-si~~L~~L~---------~~~P~-~l~~l~~L~~L~Ls~~ 66 (397)
+++.++++++ .++.+|.. ..|+|++|.++.+|. .+..+++|+ ..+|. .+..+++|++|+|++|
T Consensus 17 ~~~~l~~~~~-~l~~ip~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n 95 (270)
T 2o6q_A 17 NKNSVDCSSK-KLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDN 95 (270)
T ss_dssp TTTEEECTTS-CCSSCCSCCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCEEEccCC-CCCccCCCCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCC
Confidence 4678999986 67788863 339999999999886 566677665 34444 4578999999999999
Q ss_pred CCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcccccc
Q 015983 67 AIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 67 ~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
.++.+|.. +..+++|+.|+|++ +.+..+|. .+..+++|++|++++| .+..+|. .++.+++|+.|++++|.++.++
T Consensus 96 ~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 96 KLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYN-ELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp CCCCCCTTTTTTCSSCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred cCCcCCHhHcccccCCCEEECCC-CccCeeCHHHhCcCcCCCEEECCCC-cCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 99998865 68899999999999 57777764 5789999999999995 6777775 4788999999999999887654
No 22
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.36 E-value=8.1e-13 Score=127.44 Aligned_cols=138 Identities=14% Similarity=0.167 Sum_probs=104.4
Q ss_pred CCCCcEEeccCCCCCccCCC-------cceEEeecCCcc-ccchhhhhhhccc----------cccCccCCCCC-CCCEE
Q 015983 1 MKSLKTLVLSGCLKLKKFPD-------IVQVLWDGTDIR-ELSFAIELLFRLV----------QEFPEKTSSKD-QLLEI 61 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP~-------~~~L~Ls~n~l~-~Lp~si~~L~~L~----------~~~P~~l~~l~-~L~~L 61 (397)
|++|++|+|++|...+.+|. +..|+|++|.++ .+|..+..+++|+ +.+|..+..++ +|++|
T Consensus 100 l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L 179 (313)
T 1ogq_A 100 LTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179 (313)
T ss_dssp CTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEE
T ss_pred CCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEE
Confidence 57899999999854334543 344899999988 7888888777776 46788888887 89999
Q ss_pred EeeCCCCC-cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccc
Q 015983 62 HLEGTAIR-GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 62 ~Ls~~~i~-~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~ 140 (397)
+|++|.++ .+|..+..++ |+.|+|++|..-..+|..+..+++|+.|++++|.....+| .+..+++|+.|++++|.++
T Consensus 180 ~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~ 257 (313)
T 1ogq_A 180 TISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIY 257 (313)
T ss_dssp ECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCE
T ss_pred ECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecC-cccccCCCCEEECcCCccc
Confidence 99999888 7788888887 8888888843333567778888888888888854333344 3677888888888888776
No 23
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.36 E-value=2.7e-12 Score=121.47 Aligned_cols=142 Identities=18% Similarity=0.193 Sum_probs=115.0
Q ss_pred CCCCcEEeccCCCC-------CccCCCcceEEeecCC-cccc-chhhhhhhccc----------cccCccCCCCCCCCEE
Q 015983 1 MKSLKTLVLSGCLK-------LKKFPDIVQVLWDGTD-IREL-SFAIELLFRLV----------QEFPEKTSSKDQLLEI 61 (397)
Q Consensus 1 L~sL~~L~LsgC~~-------L~~lP~~~~L~Ls~n~-l~~L-p~si~~L~~L~----------~~~P~~l~~l~~L~~L 61 (397)
+++|++|+|++|.. +..++.+..|+|++|. ++.+ |..+..+++|+ ...|..+..+++|++|
T Consensus 55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 134 (285)
T 1ozn_A 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134 (285)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEE
Confidence 46899999999832 2234455559999997 8888 55667777665 3346678889999999
Q ss_pred EeeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcc
Q 015983 62 HLEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKF 139 (397)
Q Consensus 62 ~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~ 139 (397)
+|++|.++.+|.. ++.+++|+.|+|++ +.+..+|. .+..+++|++|++++|......|..+..+++|+.|++++|.+
T Consensus 135 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 213 (285)
T 1ozn_A 135 YLQDNALQALPDDTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213 (285)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECCCCcccccCHhHhccCCCccEEECCC-CcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcC
Confidence 9999999988865 88999999999999 57888876 588999999999999754444588899999999999999988
Q ss_pred cccc
Q 015983 140 AKAE 143 (397)
Q Consensus 140 ~~L~ 143 (397)
+.++
T Consensus 214 ~~~~ 217 (285)
T 1ozn_A 214 SALP 217 (285)
T ss_dssp SCCC
T ss_pred CcCC
Confidence 7754
No 24
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.35 E-value=3.8e-12 Score=114.06 Aligned_cols=122 Identities=21% Similarity=0.302 Sum_probs=96.0
Q ss_pred cEEeccCCCCCccCCCcc-----eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcC-CccccCC
Q 015983 5 KTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGL-PASIELL 78 (397)
Q Consensus 5 ~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~l-P~si~~L 78 (397)
+.|+++++ .++.+|... .|+|++|.|+.++.. ..+..+++|++|+|++|.|+.+ |..+..+
T Consensus 11 ~~l~~s~~-~l~~ip~~~~~~l~~L~l~~n~i~~~~~~------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 77 (192)
T 1w8a_A 11 TTVDCTGR-GLKEIPRDIPLHTTELLLNDNELGRISSD------------GLFGRLPHLVKLELKRNQLTGIEPNAFEGA 77 (192)
T ss_dssp TEEECTTS-CCSSCCSCCCTTCSEEECCSCCCCSBCCS------------CSGGGCTTCCEEECCSSCCCCBCTTTTTTC
T ss_pred CEEEcCCC-CcCcCccCCCCCCCEEECCCCcCCccCCc------------cccccCCCCCEEECCCCCCCCcCHhHcCCc
Confidence 57888886 677777533 288888888877643 0135678899999999999977 6779999
Q ss_pred CCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccc
Q 015983 79 SGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 79 ~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~ 140 (397)
++|+.|+|++ +.+..+|. .+.++++|++|+|++|......|..+..+++|+.|++++|.+.
T Consensus 78 ~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 78 SHIQELQLGE-NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp TTCCEEECCS-CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred ccCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 9999999998 57777754 5888999999999996444455778889999999999999765
No 25
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.35 E-value=2.7e-12 Score=118.37 Aligned_cols=137 Identities=16% Similarity=0.185 Sum_probs=95.4
Q ss_pred CCcEEeccCCCCCccCC--------CcceEEeecCC-ccccch-hhhhhhccc----------cccC-ccCCCCCCCCEE
Q 015983 3 SLKTLVLSGCLKLKKFP--------DIVQVLWDGTD-IRELSF-AIELLFRLV----------QEFP-EKTSSKDQLLEI 61 (397)
Q Consensus 3 sL~~L~LsgC~~L~~lP--------~~~~L~Ls~n~-l~~Lp~-si~~L~~L~----------~~~P-~~l~~l~~L~~L 61 (397)
+|+.|+|++| .++.+| .+..|++++|. ++.+|. .+..+++|+ ..+| ..+..+++|++|
T Consensus 32 ~l~~L~l~~n-~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIET-HLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESC-CCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCC-cceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 5788888887 344433 33348888886 777765 445555544 1233 445678888888
Q ss_pred EeeCCCCCcCCccccCCCCCC---EEEecCCCCCCCCCh-hccCCCcCc-eeeeecccCCccCCcccCCCCCCcEEECCC
Q 015983 62 HLEGTAIRGLPASIELLSGNV---LLNLKDRKNLKSLPS-TINGLRCLR-MLHLSGCSKLKNAPETLGKVESLESAVETV 136 (397)
Q Consensus 62 ~Ls~~~i~~lP~si~~L~~L~---~L~Ls~c~~l~~LP~-~i~~L~sL~-~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~ 136 (397)
+|++|.++.+|. +..+++|+ .|++++|..+..+|. .+.++++|+ .|++++| .+..+|.......+|+.|++++
T Consensus 111 ~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECTT
T ss_pred eCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcCC
Confidence 888888888887 77777777 888888447777765 477788888 8888884 6667776544447788888888
Q ss_pred Cc-cccc
Q 015983 137 TK-FAKA 142 (397)
Q Consensus 137 n~-~~~L 142 (397)
|. ++.+
T Consensus 189 n~~l~~i 195 (239)
T 2xwt_C 189 NKYLTVI 195 (239)
T ss_dssp CTTCCEE
T ss_pred CCCcccC
Confidence 84 6654
No 26
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.33 E-value=6.7e-12 Score=126.37 Aligned_cols=136 Identities=21% Similarity=0.250 Sum_probs=67.1
Q ss_pred CCCCcEEeccCCCCCc--------cCCCcceEEeecCCccccch-hhhhhhccc---------cccC-ccCCCCCCCCEE
Q 015983 1 MKSLKTLVLSGCLKLK--------KFPDIVQVLWDGTDIRELSF-AIELLFRLV---------QEFP-EKTSSKDQLLEI 61 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~--------~lP~~~~L~Ls~n~l~~Lp~-si~~L~~L~---------~~~P-~~l~~l~~L~~L 61 (397)
|++|+.|+|++|. +. .++.+..|+|++|.|+.+|. .+..+++|+ ..+| ..+..+++|++|
T Consensus 87 l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 165 (440)
T 3zyj_A 87 LRHLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165 (440)
T ss_dssp CSSCCEEECCSSC-CCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred CCCCCEEECCCCc-CCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEe
Confidence 3566667776662 22 22333346666666666654 244444443 1222 234455555555
Q ss_pred EeeC-CCCCcCCc-cccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccC-CcccCCCCCCcEEECCCCc
Q 015983 62 HLEG-TAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNA-PETLGKVESLESAVETVTK 138 (397)
Q Consensus 62 ~Ls~-~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~~L~ls~n~ 138 (397)
+|++ +.+..+|. .+..+++|+.|+|++ +.+..+|. +..+++|+.|+|++| .+..+ |..+..+++|+.|++++|.
T Consensus 166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~ 242 (440)
T 3zyj_A 166 DLGELKRLSYISEGAFEGLSNLRYLNLAM-CNLREIPN-LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQ 242 (440)
T ss_dssp ECCCCTTCCEECTTTTTTCSSCCEEECTT-SCCSSCCC-CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCC
T ss_pred CCCCCCCcceeCcchhhcccccCeecCCC-CcCccccc-cCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCc
Confidence 5555 24444443 345555555555555 34555553 445555555555553 23222 4445555555555555554
Q ss_pred cc
Q 015983 139 FA 140 (397)
Q Consensus 139 ~~ 140 (397)
++
T Consensus 243 l~ 244 (440)
T 3zyj_A 243 IQ 244 (440)
T ss_dssp CC
T ss_pred ee
Confidence 43
No 27
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.33 E-value=9.6e-12 Score=118.72 Aligned_cols=139 Identities=19% Similarity=0.253 Sum_probs=112.1
Q ss_pred CCCCcEEeccCCCCCcc-------CCCcceEEeecCCccccch--hhhhhhccc----------cccCccCCCCCCCCEE
Q 015983 1 MKSLKTLVLSGCLKLKK-------FPDIVQVLWDGTDIRELSF--AIELLFRLV----------QEFPEKTSSKDQLLEI 61 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~-------lP~~~~L~Ls~n~l~~Lp~--si~~L~~L~----------~~~P~~l~~l~~L~~L 61 (397)
+++|++|+|++|. +.. ++.+..|++++|.++.++. .+..+++|+ ...|..+..+++|++|
T Consensus 77 ~~~L~~L~Ls~n~-i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 77 TTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp CSCCCEEECCSCS-EEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred ccccCEEECCCCc-cccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 4689999999983 333 4455559999999998875 566666665 3466778889999999
Q ss_pred EeeCCCCCc--CCccccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCC
Q 015983 62 HLEGTAIRG--LPASIELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVT 137 (397)
Q Consensus 62 ~Ls~~~i~~--lP~si~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n 137 (397)
+|++|.++. +|..+..+++|+.|+|++ +.+..+ |..+..+++|++|++++| .+..++. .+..+++|+.|++++|
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N 233 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLN 233 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTS
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCC-CCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCC
Confidence 999999985 788999999999999999 467666 678889999999999995 5666654 6788999999999999
Q ss_pred ccccc
Q 015983 138 KFAKA 142 (397)
Q Consensus 138 ~~~~L 142 (397)
.++..
T Consensus 234 ~l~~~ 238 (306)
T 2z66_A 234 HIMTS 238 (306)
T ss_dssp CCCBC
T ss_pred CCccc
Confidence 87653
No 28
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.33 E-value=2.5e-12 Score=122.80 Aligned_cols=141 Identities=21% Similarity=0.227 Sum_probs=115.9
Q ss_pred CCCCcEEeccCCCCCcc----------CCCcceEEeecCCccccchhhhhhhccc---------cccC--ccCCCCCCCC
Q 015983 1 MKSLKTLVLSGCLKLKK----------FPDIVQVLWDGTDIRELSFAIELLFRLV---------QEFP--EKTSSKDQLL 59 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~----------lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P--~~l~~l~~L~ 59 (397)
+++|+.|+|++|. ++. ++.+..|+|++|.++.+|..+..+++|+ ..++ ..+..+++|+
T Consensus 51 l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 129 (306)
T 2z66_A 51 LTQLTKLSLSSNG-LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129 (306)
T ss_dssp CTTCSEEECCSSC-CCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCC
T ss_pred cccCCEEECCCCc-cCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCC
Confidence 4789999999984 432 4566669999999999998887777776 3344 4678899999
Q ss_pred EEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCC--CChhccCCCcCceeeeecccCCccC-CcccCCCCCCcEEECC
Q 015983 60 EIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKS--LPSTINGLRCLRMLHLSGCSKLKNA-PETLGKVESLESAVET 135 (397)
Q Consensus 60 ~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~--LP~~i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~~L~ls 135 (397)
+|+|++|.++.+ |..+..+++|+.|++++| .+.. +|..+..+++|++|++++| .+..+ |..+..+++|+.|+++
T Consensus 130 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~ 207 (306)
T 2z66_A 130 YLDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMS 207 (306)
T ss_dssp EEECTTSCCEECSTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECT
T ss_pred EEECCCCcCCccchhhcccCcCCCEEECCCC-ccccccchhHHhhCcCCCEEECCCC-CcCCcCHHHhcCCCCCCEEECC
Confidence 999999999854 566889999999999994 5654 7888999999999999996 45555 7788999999999999
Q ss_pred CCccccccc
Q 015983 136 VTKFAKAEL 144 (397)
Q Consensus 136 ~n~~~~L~~ 144 (397)
+|.++.++.
T Consensus 208 ~N~l~~~~~ 216 (306)
T 2z66_A 208 HNNFFSLDT 216 (306)
T ss_dssp TSCCSBCCS
T ss_pred CCccCccCh
Confidence 999877543
No 29
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.33 E-value=5.3e-12 Score=118.89 Aligned_cols=124 Identities=16% Similarity=0.220 Sum_probs=86.5
Q ss_pred CCCCcEEeccCCCCCccCCC------cceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc
Q 015983 1 MKSLKTLVLSGCLKLKKFPD------IVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS 74 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP~------~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s 74 (397)
|++|+.|+|++| .++.+|. +..|+|++|.|+.+|. + ..+++|++|+|++|.++.+|..
T Consensus 40 l~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~L~~N~i~~~~~-l--------------~~l~~L~~L~L~~N~l~~l~~~ 103 (263)
T 1xeu_A 40 LSGVQNFNGDNS-NIQSLAGMQFFTNLKELHLSHNQISDLSP-L--------------KDLTKLEELSVNRNRLKNLNGI 103 (263)
T ss_dssp HTTCSEEECTTS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-G--------------TTCSSCCEEECCSSCCSCCTTC
T ss_pred cCcCcEEECcCC-CcccchHHhhCCCCCEEECCCCccCCChh-h--------------ccCCCCCEEECCCCccCCcCcc
Confidence 357888888887 4555553 3338888888877765 3 5667778888888888777654
Q ss_pred ccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccc
Q 015983 75 IELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIA 146 (397)
Q Consensus 75 i~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~ 146 (397)
.. ++|+.|+|++ +.+..+|. +..+++|+.|++++| .+..+| .++.+++|+.|++++|.++.+..+.
T Consensus 104 ~~--~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~Ls~N-~i~~~~-~l~~l~~L~~L~L~~N~i~~~~~l~ 169 (263)
T 1xeu_A 104 PS--ACLSRLFLDN-NELRDTDS-LIHLKNLEILSIRNN-KLKSIV-MLGFLSKLEVLDLHGNEITNTGGLT 169 (263)
T ss_dssp CC--SSCCEEECCS-SCCSBSGG-GTTCTTCCEEECTTS-CCCBCG-GGGGCTTCCEEECTTSCCCBCTTST
T ss_pred cc--CcccEEEccC-CccCCChh-hcCcccccEEECCCC-cCCCCh-HHccCCCCCEEECCCCcCcchHHhc
Confidence 33 7788888887 46777664 777788888888774 566665 4667777888888888776654433
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.33 E-value=6.7e-12 Score=132.64 Aligned_cols=81 Identities=17% Similarity=0.127 Sum_probs=43.9
Q ss_pred CCCCCCEEEeeCCCCCcCCccccC--------CCCCCEEEecCCCCCCCCChhcc--CCCcCceeeeecccCCccCCccc
Q 015983 54 SKDQLLEIHLEGTAIRGLPASIEL--------LSGNVLLNLKDRKNLKSLPSTIN--GLRCLRMLHLSGCSKLKNAPETL 123 (397)
Q Consensus 54 ~l~~L~~L~Ls~~~i~~lP~si~~--------L~~L~~L~Ls~c~~l~~LP~~i~--~L~sL~~L~Ls~C~~L~~lP~~~ 123 (397)
.+++|++|+|++|.++.+|..+.. +++|+.|+|++ +.+..+|..+. .+++|+.|+|++| .+..+|..+
T Consensus 455 ~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~ 532 (636)
T 4eco_A 455 TGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRF-NKLTKLSDDFRATTLPYLVGIDLSYN-SFSKFPTQP 532 (636)
T ss_dssp TTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCS-SCCCBCCGGGSTTTCTTCCEEECCSS-CCSSCCCGG
T ss_pred cCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcC-CcCCccChhhhhccCCCcCEEECCCC-CCCCcChhh
Confidence 355566666666666555544222 11566666665 34555555554 5566666666653 344455555
Q ss_pred CCCCCCcEEECCC
Q 015983 124 GKVESLESAVETV 136 (397)
Q Consensus 124 ~~L~~L~~L~ls~ 136 (397)
..+++|+.|++++
T Consensus 533 ~~l~~L~~L~Ls~ 545 (636)
T 4eco_A 533 LNSSTLKGFGIRN 545 (636)
T ss_dssp GGCSSCCEEECCS
T ss_pred hcCCCCCEEECCC
Confidence 5556666666543
No 31
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.33 E-value=1.1e-11 Score=111.28 Aligned_cols=118 Identities=24% Similarity=0.377 Sum_probs=81.7
Q ss_pred cEEeccCCCCCccCCCcc-----eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc-cccCC
Q 015983 5 KTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA-SIELL 78 (397)
Q Consensus 5 ~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~-si~~L 78 (397)
+.++++++ .++.+|... .|+|++|.|+.+|..+ ..+++|++|+|++|.|+.++. .+..+
T Consensus 13 ~~l~~~~~-~l~~ip~~~~~~l~~L~L~~n~i~~ip~~~--------------~~l~~L~~L~Ls~N~i~~i~~~~f~~l 77 (193)
T 2wfh_A 13 TVVRCSNK-GLKVLPKGIPRDVTELYLDGNQFTLVPKEL--------------SNYKHLTLIDLSNNRISTLSNQSFSNM 77 (193)
T ss_dssp TEEECTTS-CCSSCCSCCCTTCCEEECCSSCCCSCCGGG--------------GGCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred CEEEcCCC-CCCcCCCCCCCCCCEEECCCCcCchhHHHh--------------hcccCCCEEECCCCcCCEeCHhHccCC
Confidence 45667765 466666432 2777777777666543 456677888888888877764 47778
Q ss_pred CCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcc
Q 015983 79 SGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKF 139 (397)
Q Consensus 79 ~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~ 139 (397)
++|+.|+|++ +.+..+|. .+.++++|++|+|++ +.+..+|. .+..+++|+.|++++|++
T Consensus 78 ~~L~~L~Ls~-N~l~~i~~~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 78 TQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCS-SCCCBCCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCCEEECCC-CccCEeCHHHhCCCCCCCEEECCC-CCCCeeChhhhhcCccccEEEeCCCCe
Confidence 8888888887 56766654 577778888888887 45666665 466777788888877765
No 32
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.32 E-value=9.8e-12 Score=125.59 Aligned_cols=138 Identities=18% Similarity=0.198 Sum_probs=68.2
Q ss_pred CCCCcEEeccCCCC-------CccCCCcceEEeecCCccccchh-hhhhhccc---------cccC-ccCCCCCCCCEEE
Q 015983 1 MKSLKTLVLSGCLK-------LKKFPDIVQVLWDGTDIRELSFA-IELLFRLV---------QEFP-EKTSSKDQLLEIH 62 (397)
Q Consensus 1 L~sL~~L~LsgC~~-------L~~lP~~~~L~Ls~n~l~~Lp~s-i~~L~~L~---------~~~P-~~l~~l~~L~~L~ 62 (397)
|++|+.|+|++|.. +..++.+..|+|++|.++.+|.. +..+++|+ ..+| ..+..+++|++|+
T Consensus 98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 177 (452)
T 3zyi_A 98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLD 177 (452)
T ss_dssp CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEe
Confidence 35677777777621 12233333466777766666554 34444443 2222 2344555555555
Q ss_pred eeC-CCCCcCCc-cccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccc
Q 015983 63 LEG-TAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 63 Ls~-~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~ 140 (397)
|++ +.+..+|. .+..+++|+.|+|++ +.+..+|. +..+++|+.|+|++|......|..+..+++|+.|++++|.++
T Consensus 178 l~~~~~l~~i~~~~~~~l~~L~~L~L~~-n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~ 255 (452)
T 3zyi_A 178 LGELKKLEYISEGAFEGLFNLKYLNLGM-CNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS 255 (452)
T ss_dssp CCCCTTCCEECTTTTTTCTTCCEEECTT-SCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCC
T ss_pred CCCCCCccccChhhccCCCCCCEEECCC-Cccccccc-ccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCc
Confidence 555 34444443 245555555555555 34555543 444555555555553222222444555555555555555443
No 33
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.32 E-value=8.5e-12 Score=122.63 Aligned_cols=136 Identities=18% Similarity=0.155 Sum_probs=98.0
Q ss_pred cEEeccCCCCCccCCCcc-----eEEeecCCccccchhh-h-hhhccc---------ccc-CccCCCCCCCCEEEeeCCC
Q 015983 5 KTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSFAI-E-LLFRLV---------QEF-PEKTSSKDQLLEIHLEGTA 67 (397)
Q Consensus 5 ~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~si-~-~L~~L~---------~~~-P~~l~~l~~L~~L~Ls~~~ 67 (397)
+.++++++ .|+.+|... .|+|++|.|+.++... . .+++|+ ..+ |..+..+++|++|+|++|.
T Consensus 21 ~~l~c~~~-~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 21 NILSCSKQ-QLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH 99 (361)
T ss_dssp TEEECCSS-CCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCC-CcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence 46777775 677777533 2899999988887653 2 444443 223 3457788888888888888
Q ss_pred CCcCCc-cccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccCCccc----CCCCCCcEEECCCCcccc
Q 015983 68 IRGLPA-SIELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNAPETL----GKVESLESAVETVTKFAK 141 (397)
Q Consensus 68 i~~lP~-si~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~lP~~~----~~L~~L~~L~ls~n~~~~ 141 (397)
|+.+|. .+..+++|+.|+|++ +.+..+ |..+.++++|+.|+|++ +.+..+|... ..+++|+.|++++|.++.
T Consensus 100 l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 100 LHTLDEFLFSDLQALEVLLLYN-NHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp CCEECTTTTTTCTTCCEEECCS-SCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CCcCCHHHhCCCcCCCEEECCC-CcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 887765 477888888888888 566666 56788888888888888 4677777653 567888888888888776
Q ss_pred cc
Q 015983 142 AE 143 (397)
Q Consensus 142 L~ 143 (397)
++
T Consensus 178 l~ 179 (361)
T 2xot_A 178 LP 179 (361)
T ss_dssp CC
T ss_pred cC
Confidence 54
No 34
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.32 E-value=3.3e-12 Score=137.79 Aligned_cols=138 Identities=18% Similarity=0.179 Sum_probs=98.1
Q ss_pred CCcEEeccCCCCCcc---------CCCcceEEeecCCcc-ccchhhhhhhccc----------cccCccCCCCCCCCEEE
Q 015983 3 SLKTLVLSGCLKLKK---------FPDIVQVLWDGTDIR-ELSFAIELLFRLV----------QEFPEKTSSKDQLLEIH 62 (397)
Q Consensus 3 sL~~L~LsgC~~L~~---------lP~~~~L~Ls~n~l~-~Lp~si~~L~~L~----------~~~P~~l~~l~~L~~L~ 62 (397)
+|+.|+|++|...+. ++.+..|++++|.++ .+|..+..+++|+ +.+|..++.+++|++|+
T Consensus 369 ~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~ 448 (768)
T 3rgz_A 369 SLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLK 448 (768)
T ss_dssp TCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred CCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEE
Confidence 688888888743322 233444788888777 6677777666665 45677777777788888
Q ss_pred eeCCCCC-cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccc
Q 015983 63 LEGTAIR-GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 63 Ls~~~i~-~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~ 140 (397)
|++|.++ .+|..++.+++|+.|+|++|.....+|..+.++++|++|++++|...+.+|..++.+++|+.|++++|.++
T Consensus 449 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp CCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCccc
Confidence 8877777 67777777777888888775444466777777777888888776655577777777777777777777765
No 35
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.30 E-value=9.5e-12 Score=120.37 Aligned_cols=83 Identities=13% Similarity=0.211 Sum_probs=51.1
Q ss_pred CCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCC-hhccCCCcCceeeeecccCCccCC-cccCCCCCCcEEEC
Q 015983 57 QLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLP-STINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVE 134 (397)
Q Consensus 57 ~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP-~~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~l 134 (397)
+|++|++++|.++.+|..+. ++|+.|++++ +.+..++ ..+..+++|++|++++| .+..++ ..+..+++|+.|++
T Consensus 173 ~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 173 KLNYLRISEAKLTGIPKDLP--ETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHL 248 (332)
T ss_dssp CCSCCBCCSSBCSSCCSSSC--SSCSCCBCCS-SCCCCCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEEC
T ss_pred ccCEEECcCCCCCccCcccc--CCCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEEC
Confidence 44444444444444444332 4667777776 4555554 56777778888888874 444444 45677777888888
Q ss_pred CCCcccccc
Q 015983 135 TVTKFAKAE 143 (397)
Q Consensus 135 s~n~~~~L~ 143 (397)
++|.++.++
T Consensus 249 ~~N~l~~lp 257 (332)
T 2ft3_A 249 DNNKLSRVP 257 (332)
T ss_dssp CSSCCCBCC
T ss_pred CCCcCeecC
Confidence 877766544
No 36
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.30 E-value=2.7e-11 Score=109.30 Aligned_cols=119 Identities=20% Similarity=0.313 Sum_probs=57.4
Q ss_pred EEeccCCCCCccCCC-----cceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc-ccCCC
Q 015983 6 TLVLSGCLKLKKFPD-----IVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS-IELLS 79 (397)
Q Consensus 6 ~L~LsgC~~L~~lP~-----~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s-i~~L~ 79 (397)
.++.+++ .+..+|. +..|+|++|.++.+|... +..+++|++|+|++|.++.+|.. +..++
T Consensus 11 ~v~c~~~-~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 76 (208)
T 2o6s_A 11 TVECYSQ-GRTSVPTGIPAQTTYLDLETNSLKSLPNGV-------------FDELTSLTQLYLGGNKLQSLPNGVFNKLT 76 (208)
T ss_dssp EEECCSS-CCSSCCSCCCTTCSEEECCSSCCCCCCTTT-------------TTTCTTCSEEECCSSCCCCCCTTTTTTCT
T ss_pred EEEecCC-CccCCCCCCCCCCcEEEcCCCccCcCChhh-------------hcccccCcEEECCCCccCccChhhcCCCC
Confidence 4555554 4455553 223777777777665432 23444455555555555544433 34455
Q ss_pred CCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCccc
Q 015983 80 GNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFA 140 (397)
Q Consensus 80 ~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~ 140 (397)
+|+.|+|++ +.+..+|. .+..+++|++|++++| .+..+|. .+..+++|+.|++++|.++
T Consensus 77 ~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~ 137 (208)
T 2o6s_A 77 SLTYLNLST-NQLQSLPNGVFDKLTQLKELALNTN-QLQSLPDGVFDKLTQLKDLRLYQNQLK 137 (208)
T ss_dssp TCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred CcCEEECCC-CcCCccCHhHhcCccCCCEEEcCCC-cCcccCHhHhccCCcCCEEECCCCccc
Confidence 555555554 34444433 2344555555555542 3333332 2344455555555555444
No 37
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.30 E-value=5.3e-12 Score=121.42 Aligned_cols=141 Identities=16% Similarity=0.085 Sum_probs=107.5
Q ss_pred CCCCcEEeccCCCCCccCCC---------cceEEeecCCccccchhhhhh-----hccc----------cccCccCCCCC
Q 015983 1 MKSLKTLVLSGCLKLKKFPD---------IVQVLWDGTDIRELSFAIELL-----FRLV----------QEFPEKTSSKD 56 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP~---------~~~L~Ls~n~l~~Lp~si~~L-----~~L~----------~~~P~~l~~l~ 56 (397)
+++|++|+|++|...+.+|. +..|+|++|.++.+|..+..+ ++|+ ...|..++.++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 46899999999864444554 334999999999888877776 5665 33447788999
Q ss_pred CCCEEEeeCCCCCc---CCccc--cCCCCCCEEEecCCCCCCCCCh----hccCCCcCceeeeecccCCccCC--cccCC
Q 015983 57 QLLEIHLEGTAIRG---LPASI--ELLSGNVLLNLKDRKNLKSLPS----TINGLRCLRMLHLSGCSKLKNAP--ETLGK 125 (397)
Q Consensus 57 ~L~~L~Ls~~~i~~---lP~si--~~L~~L~~L~Ls~c~~l~~LP~----~i~~L~sL~~L~Ls~C~~L~~lP--~~~~~ 125 (397)
+|++|+|++|.+.. +|..+ +.+++|+.|+|++ +.+..+|. .+..+++|++|++++| .+...+ ..+..
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~ 251 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN-AGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDW 251 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTT-SCCCCHHHHHHHHHHTTCCCSEEECTTS-CCCSSCCCSCCCC
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCC-CcCcchHHHHHHHHhcCCCCCEEECCCC-cCCcccchhhhhh
Confidence 99999999998763 45555 8899999999999 57875542 3457799999999996 455543 34566
Q ss_pred CCCCcEEECCCCcccccc
Q 015983 126 VESLESAVETVTKFAKAE 143 (397)
Q Consensus 126 L~~L~~L~ls~n~~~~L~ 143 (397)
+++|+.|++++|.++.++
T Consensus 252 l~~L~~L~Ls~N~l~~ip 269 (312)
T 1wwl_A 252 PSQLNSLNLSFTGLKQVP 269 (312)
T ss_dssp CTTCCEEECTTSCCSSCC
T ss_pred cCCCCEEECCCCccChhh
Confidence 889999999999887654
No 38
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.30 E-value=6.6e-12 Score=130.88 Aligned_cols=140 Identities=16% Similarity=0.072 Sum_probs=105.8
Q ss_pred CCCCcEEeccCCCCCc----------cCCCcceEEeecCCccccchhhhhhhccc----------cccC-ccCCCCCCCC
Q 015983 1 MKSLKTLVLSGCLKLK----------KFPDIVQVLWDGTDIRELSFAIELLFRLV----------QEFP-EKTSSKDQLL 59 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~----------~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~----------~~~P-~~l~~l~~L~ 59 (397)
+++|+.|+|++|. +. .+|.+..|++++|.++.+|..+..+++|+ ...| ..+..+++|+
T Consensus 349 l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 427 (606)
T 3vq2_A 349 LPSLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLL 427 (606)
T ss_dssp CTTCCEEECCSSC-EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCC
T ss_pred CCCCCEEECcCCc-cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCC
Confidence 4688999999883 33 33455558899888888887777777665 2233 4677888899
Q ss_pred EEEeeCCCCCc-CCccccCCCCCCEEEecCCCCCCC--CChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCC
Q 015983 60 EIHLEGTAIRG-LPASIELLSGNVLLNLKDRKNLKS--LPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETV 136 (397)
Q Consensus 60 ~L~Ls~~~i~~-lP~si~~L~~L~~L~Ls~c~~l~~--LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~ 136 (397)
+|++++|.++. .|..++.+++|+.|++++| .+.. +|..+..+++|++|++++|......|..++.+++|+.|++++
T Consensus 428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 506 (606)
T 3vq2_A 428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSH 506 (606)
T ss_dssp EEECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EEECcCCCCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCC
Confidence 99998888875 5667888888899988884 5543 677888888888888888754455567788888888888888
Q ss_pred Cccccc
Q 015983 137 TKFAKA 142 (397)
Q Consensus 137 n~~~~L 142 (397)
|.++.+
T Consensus 507 N~l~~~ 512 (606)
T 3vq2_A 507 NNLLFL 512 (606)
T ss_dssp SCCSCE
T ss_pred CcCCCc
Confidence 887664
No 39
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.30 E-value=1.1e-11 Score=130.50 Aligned_cols=142 Identities=13% Similarity=0.264 Sum_probs=104.1
Q ss_pred CCCCcEEeccCCCCCccCC------CcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983 1 MKSLKTLVLSGCLKLKKFP------DIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG 65 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP------~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~ 65 (397)
|++|+.|+|++| .+..+| .+..|+|++|.|+.+|. +..|++|+ ..+| .+..|++|++|+|++
T Consensus 42 L~~L~~L~l~~n-~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~ 118 (605)
T 1m9s_A 42 LNSIDQIIANNS-DIKSVQGIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEH 118 (605)
T ss_dssp HTTCCCCBCTTC-CCCCCTTGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTT
T ss_pred CCCCCEEECcCC-CCCCChHHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecC
Confidence 357888888887 344444 34448888888888776 66666665 3333 567888888999988
Q ss_pred CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccccc
Q 015983 66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELI 145 (397)
Q Consensus 66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l 145 (397)
|.|+.+| .+..|++|+.|+|++ +.+..+ ..+..+++|+.|+|++| .+..++. +..+++|+.|++++|.++.++.+
T Consensus 119 N~l~~l~-~l~~l~~L~~L~Ls~-N~l~~l-~~l~~l~~L~~L~Ls~N-~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~~l 193 (605)
T 1m9s_A 119 NGISDIN-GLVHLPQLESLYLGN-NKITDI-TVLSRLTKLDTLSLEDN-QISDIVP-LAGLTKLQNLYLSKNHISDLRAL 193 (605)
T ss_dssp SCCCCCG-GGGGCTTCSEEECCS-SCCCCC-GGGGSCTTCSEEECCSS-CCCCCGG-GTTCTTCCEEECCSSCCCBCGGG
T ss_pred CCCCCCc-cccCCCccCEEECCC-CccCCc-hhhcccCCCCEEECcCC-cCCCchh-hccCCCCCEEECcCCCCCCChHH
Confidence 8888864 578888888888888 577777 45788888888888885 5555554 77888888888888888776655
Q ss_pred ccCCC
Q 015983 146 AQKDS 150 (397)
Q Consensus 146 ~~l~~ 150 (397)
..++.
T Consensus 194 ~~l~~ 198 (605)
T 1m9s_A 194 AGLKN 198 (605)
T ss_dssp TTCTT
T ss_pred ccCCC
Confidence 54443
No 40
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.30 E-value=2.1e-11 Score=112.28 Aligned_cols=124 Identities=21% Similarity=0.244 Sum_probs=100.1
Q ss_pred CCCcEEeccCCCCCc-------cCCCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc
Q 015983 2 KSLKTLVLSGCLKLK-------KFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS 74 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~-------~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s 74 (397)
++|+.|+|++|...+ .++.+..|+|++|.|+.+|... +..+++|++|+|++|.|+.+|..
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~-------------~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV-------------FDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT-------------TTTCTTCCEEECCSSCCCCCCTT
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhh-------------cccCCCcCEEECCCCcCCccChh
Confidence 478999999984322 2333444999999998887543 36788899999999999988865
Q ss_pred -ccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCccc
Q 015983 75 -IELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 75 -i~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~ 140 (397)
+..+++|+.|+|++ +.+..+|..+..+++|++|+|++| .+..+| ..+..+++|+.|++++|.+.
T Consensus 107 ~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 107 VFDRLVHLKELFMCC-NKLTELPRGIERLTHLTHLALDQN-QLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECCS-SCCCSCCTTGGGCTTCSEEECCSS-CCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred HhCcchhhCeEeccC-CcccccCcccccCCCCCEEECCCC-cCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 68899999999998 688899998999999999999994 777777 45788899999999998764
No 41
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.30 E-value=2.4e-12 Score=113.45 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=71.9
Q ss_pred CCCcEEeccCCCCCccCCCc-------ceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc
Q 015983 2 KSLKTLVLSGCLKLKKFPDI-------VQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS 74 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP~~-------~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s 74 (397)
.+|+.|+|++| .++.+|.+ ..|+|++|.|+.++ . +..+++|++|+|++|.|+.+|..
T Consensus 19 ~~L~~L~l~~n-~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~-~--------------l~~l~~L~~L~Ls~N~l~~~~~~ 82 (176)
T 1a9n_A 19 VRDRELDLRGY-KIPVIENLGATLDQFDAIDFSDNEIRKLD-G--------------FPLLRRLKTLLVNNNRICRIGEG 82 (176)
T ss_dssp TSCEEEECTTS-CCCSCCCGGGGTTCCSEEECCSSCCCEEC-C--------------CCCCSSCCEEECCSSCCCEECSC
T ss_pred CCceEEEeeCC-CCchhHHhhhcCCCCCEEECCCCCCCccc-c--------------cccCCCCCEEECCCCcccccCcc
Confidence 45677777776 44444432 22666666665541 1 24556666666666666666654
Q ss_pred c-cCCCCCCEEEecCCCCCCCCCh--hccCCCcCceeeeecccCCccCCcc----cCCCCCCcEEECCCCccc
Q 015983 75 I-ELLSGNVLLNLKDRKNLKSLPS--TINGLRCLRMLHLSGCSKLKNAPET----LGKVESLESAVETVTKFA 140 (397)
Q Consensus 75 i-~~L~~L~~L~Ls~c~~l~~LP~--~i~~L~sL~~L~Ls~C~~L~~lP~~----~~~L~~L~~L~ls~n~~~ 140 (397)
+ ..+++|+.|+|++ +.+..+|. .+..+++|+.|++++| .+..+|.. +..+++|+.|+++.|...
T Consensus 83 ~~~~l~~L~~L~L~~-N~i~~~~~~~~l~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 83 LDQALPDLTELILTN-NSLVELGDLDPLASLKSLTYLCILRN-PVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp HHHHCTTCCEEECCS-CCCCCGGGGGGGGGCTTCCEEECCSS-GGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred hhhcCCCCCEEECCC-CcCCcchhhHhhhcCCCCCEEEecCC-CCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 3 6666666666666 45666665 5666666666666663 45555553 556666666666665443
No 42
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.30 E-value=9.3e-12 Score=131.57 Aligned_cols=142 Identities=15% Similarity=0.105 Sum_probs=114.4
Q ss_pred CCCcEEeccCCCCCccCC--------------CcceEEeecCCccccchhhhh-hhccc---------cccCccCCC---
Q 015983 2 KSLKTLVLSGCLKLKKFP--------------DIVQVLWDGTDIRELSFAIEL-LFRLV---------QEFPEKTSS--- 54 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP--------------~~~~L~Ls~n~l~~Lp~si~~-L~~L~---------~~~P~~l~~--- 54 (397)
++|+.|+|++|...+.+| .+..|+|++|.++.+|..+.. +++|+ ..+|.....
T Consensus 402 ~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~ 481 (636)
T 4eco_A 402 SVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDEN 481 (636)
T ss_dssp SCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETT
T ss_pred CccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhcccc
Confidence 479999999986544333 344499999999999987643 66665 445553322
Q ss_pred -----CCCCCEEEeeCCCCCcCCcccc--CCCCCCEEEecCCCCCCCCChhccCCCcCceeeee------cccCCccCCc
Q 015983 55 -----KDQLLEIHLEGTAIRGLPASIE--LLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLS------GCSKLKNAPE 121 (397)
Q Consensus 55 -----l~~L~~L~Ls~~~i~~lP~si~--~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls------~C~~L~~lP~ 121 (397)
+++|++|+|++|.|+.+|..+. .+++|+.|+|++ +.+..+|..+..+++|+.|+|+ +|...+.+|.
T Consensus 482 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~-N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~ 560 (636)
T 4eco_A 482 ENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSY-NSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560 (636)
T ss_dssp EECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCS-SCCSSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCT
T ss_pred ccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCC-CCCCCcChhhhcCCCCCEEECCCCcccccCcccccChH
Confidence 2389999999999999999987 999999999999 6788899999999999999995 4555778999
Q ss_pred ccCCCCCCcEEECCCCccccccc
Q 015983 122 TLGKVESLESAVETVTKFAKAEL 144 (397)
Q Consensus 122 ~~~~L~~L~~L~ls~n~~~~L~~ 144 (397)
.++.+++|+.|++++|.++.++.
T Consensus 561 ~l~~l~~L~~L~Ls~N~l~~ip~ 583 (636)
T 4eco_A 561 GITLCPSLTQLQIGSNDIRKVNE 583 (636)
T ss_dssp TGGGCSSCCEEECCSSCCCBCCS
T ss_pred HHhcCCCCCEEECCCCcCCccCH
Confidence 99999999999999999876654
No 43
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.30 E-value=8.6e-12 Score=119.13 Aligned_cols=135 Identities=19% Similarity=0.271 Sum_probs=111.0
Q ss_pred CCCCcEEeccCCCCCccC------CCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983 1 MKSLKTLVLSGCLKLKKF------PDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG 65 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~l------P~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~ 65 (397)
+++|+.|+|++| .++.+ +.+..|+|++|.++.+|. +..+++|+ ..+ +.+..+++|++|+|++
T Consensus 67 l~~L~~L~L~~n-~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~ 143 (291)
T 1h6t_A 67 LPNVTKLFLNGN-KLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGN 143 (291)
T ss_dssp CTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCS
T ss_pred CCCCCEEEccCC-ccCCCcccccCCCCCEEECCCCcCCCChh-hccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccC
Confidence 578999999998 44444 344459999999998775 66666665 333 3467889999999999
Q ss_pred CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983 66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
|.++.+ ..+..+++|+.|++++ +.+..++. +..+++|+.|++++| .+..+|. +..+++|+.|++++|.++..+
T Consensus 144 n~l~~~-~~l~~l~~L~~L~L~~-N~l~~~~~-l~~l~~L~~L~L~~N-~i~~l~~-l~~l~~L~~L~l~~n~i~~~~ 216 (291)
T 1h6t_A 144 NKITDI-TVLSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYLSKN-HISDLRA-LAGLKNLDVLELFSQECLNKP 216 (291)
T ss_dssp SCCCCC-GGGGGCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCSS-CCCBCGG-GTTCTTCSEEEEEEEEEECCC
T ss_pred CcCCcc-hhhccCCCCCEEEccC-Cccccchh-hcCCCccCEEECCCC-cCCCChh-hccCCCCCEEECcCCcccCCc
Confidence 999998 6789999999999999 58888877 899999999999995 7888875 788999999999999876533
No 44
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.30 E-value=4.9e-12 Score=138.29 Aligned_cols=137 Identities=19% Similarity=0.240 Sum_probs=91.8
Q ss_pred CCCCcEEeccCCCCCccCCCcc-------eEEeecCC-ccc--cchhhhhhh-------ccc---------cccCc--cC
Q 015983 1 MKSLKTLVLSGCLKLKKFPDIV-------QVLWDGTD-IRE--LSFAIELLF-------RLV---------QEFPE--KT 52 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP~~~-------~L~Ls~n~-l~~--Lp~si~~L~-------~L~---------~~~P~--~l 52 (397)
|++|+.|+|++|...+.+|... .|+|++|. ++. +|..++.++ +|+ ..+|. .+
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l 569 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASL 569 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhh
Confidence 5789999999998777777433 39999998 884 999888776 443 35565 56
Q ss_pred CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCc-CceeeeecccCCccCCcccCCCCC--C
Q 015983 53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRC-LRMLHLSGCSKLKNAPETLGKVES--L 129 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~s-L~~L~Ls~C~~L~~lP~~~~~L~~--L 129 (397)
+.+++|+.|+|++|.++.+| .++.+++|+.|+|++ +.+..+|..+..+++ |+.|+|++| .+..+|..+..+.. |
T Consensus 570 ~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~-N~l~~lp~~l~~l~~~L~~L~Ls~N-~L~~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 570 QKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDY-NQIEEIPEDFCAFTDQVEGLGFSHN-KLKYIPNIFNAKSVYVM 646 (876)
T ss_dssp TTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCS-SCCSCCCTTSCEECTTCCEEECCSS-CCCSCCSCCCTTCSSCE
T ss_pred hcCCCCCEEECCCCCcccch-hhcCCCcceEEECcC-CccccchHHHhhccccCCEEECcCC-CCCcCchhhhccccCCC
Confidence 66666666666666666666 666666666666666 345566666666666 666666664 35566655554433 6
Q ss_pred cEEECCCCccc
Q 015983 130 ESAVETVTKFA 140 (397)
Q Consensus 130 ~~L~ls~n~~~ 140 (397)
+.|++++|.+.
T Consensus 647 ~~L~Ls~N~l~ 657 (876)
T 4ecn_A 647 GSVDFSYNKIG 657 (876)
T ss_dssp EEEECCSSCTT
T ss_pred CEEECcCCcCC
Confidence 66666666554
No 45
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.29 E-value=1.9e-11 Score=118.04 Aligned_cols=138 Identities=16% Similarity=0.267 Sum_probs=99.4
Q ss_pred CCCCcEEeccCCCCCccC--------CCcceEEeecCCccccchhhh-hhhccc-------cccCccCCCCCCCCEEEee
Q 015983 1 MKSLKTLVLSGCLKLKKF--------PDIVQVLWDGTDIRELSFAIE-LLFRLV-------QEFPEKTSSKDQLLEIHLE 64 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~l--------P~~~~L~Ls~n~l~~Lp~si~-~L~~L~-------~~~P~~l~~l~~L~~L~Ls 64 (397)
+++|++|+|++|. ++.+ +.+..|+|++|.++.+|..+. +|+.|. ...+..+..+++|++|+|+
T Consensus 75 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 153 (330)
T 1xku_A 75 LKNLHTLILINNK-ISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELG 153 (330)
T ss_dssp CTTCCEEECCSSC-CCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECC
T ss_pred CCCCCEEECCCCc-CCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECC
Confidence 4678999999884 3333 334448999999988887653 344433 2233446778888999998
Q ss_pred CCCCC---cCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccC-CcccCCCCCCcEEECCCCccc
Q 015983 65 GTAIR---GLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNA-PETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 65 ~~~i~---~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~~L~ls~n~~~ 140 (397)
+|.++ ..|..+..+++|+.|++++ +.+..+|..+. ++|++|++++|. +..+ |..+..+++|+.|++++|.++
T Consensus 154 ~n~l~~~~~~~~~~~~l~~L~~L~l~~-n~l~~l~~~~~--~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~ 229 (330)
T 1xku_A 154 TNPLKSSGIENGAFQGMKKLSYIRIAD-TNITTIPQGLP--PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSIS 229 (330)
T ss_dssp SSCCCGGGBCTTGGGGCTTCCEEECCS-SCCCSCCSSCC--TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCC
T ss_pred CCcCCccCcChhhccCCCCcCEEECCC-CccccCCcccc--ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCc
Confidence 88886 3456788888899999888 57888887653 788888888864 4444 667888888888888888776
Q ss_pred ccc
Q 015983 141 KAE 143 (397)
Q Consensus 141 ~L~ 143 (397)
.+.
T Consensus 230 ~~~ 232 (330)
T 1xku_A 230 AVD 232 (330)
T ss_dssp EEC
T ss_pred eeC
Confidence 543
No 46
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.28 E-value=2e-11 Score=133.48 Aligned_cols=81 Identities=15% Similarity=0.101 Sum_probs=44.2
Q ss_pred CCCCCCEEEeeCCCCCcCCccccCCC--------CCCEEEecCCCCCCCCChhcc--CCCcCceeeeecccCCccCCccc
Q 015983 54 SKDQLLEIHLEGTAIRGLPASIELLS--------GNVLLNLKDRKNLKSLPSTIN--GLRCLRMLHLSGCSKLKNAPETL 123 (397)
Q Consensus 54 ~l~~L~~L~Ls~~~i~~lP~si~~L~--------~L~~L~Ls~c~~l~~LP~~i~--~L~sL~~L~Ls~C~~L~~lP~~~ 123 (397)
.+++|+.|+|++|.|+.+|..+.... +|+.|+|++ +.+..+|..+. .+++|+.|+|++| .+..+|..+
T Consensus 695 ~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~-N~L~~lp~~l~~~~l~~L~~L~Ls~N-~L~~lp~~l 772 (876)
T 4ecn_A 695 TGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRF-NKLTSLSDDFRATTLPYLSNMDVSYN-CFSSFPTQP 772 (876)
T ss_dssp TTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCS-SCCCCCCGGGSTTTCTTCCEEECCSS-CCSSCCCGG
T ss_pred cCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCC-CCCccchHHhhhccCCCcCEEEeCCC-CCCccchhh
Confidence 45556666666665555555433221 556666655 34555555554 5556666666553 344455555
Q ss_pred CCCCCCcEEECCC
Q 015983 124 GKVESLESAVETV 136 (397)
Q Consensus 124 ~~L~~L~~L~ls~ 136 (397)
..+++|+.|++++
T Consensus 773 ~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 773 LNSSQLKAFGIRH 785 (876)
T ss_dssp GGCTTCCEEECCC
T ss_pred hcCCCCCEEECCC
Confidence 5555566665554
No 47
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.28 E-value=1.2e-11 Score=111.05 Aligned_cols=93 Identities=13% Similarity=0.161 Sum_probs=61.0
Q ss_pred CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCC-CChhccCCCcCceeeeecccCCccCCcccCCCCCCcE
Q 015983 53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKS-LPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLES 131 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~-LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~ 131 (397)
..+++|++|++++|.++.++ .+..+++|+.|++++ +.+.. .|..+..+++|++|++++|......|..++.+++|+.
T Consensus 63 ~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~ 140 (197)
T 4ezg_A 63 EYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMG-KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNS 140 (197)
T ss_dssp GGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEEC-TTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCE
T ss_pred hcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeEC-CccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCE
Confidence 45566777777777666554 566777777777777 34543 4666777777777777775443345666677777777
Q ss_pred EECCCCc-ccccccccc
Q 015983 132 AVETVTK-FAKAELIAQ 147 (397)
Q Consensus 132 L~ls~n~-~~~L~~l~~ 147 (397)
|++++|. ++.++.+..
T Consensus 141 L~L~~n~~i~~~~~l~~ 157 (197)
T 4ezg_A 141 IDLSYNGAITDIMPLKT 157 (197)
T ss_dssp EECCSCTBCCCCGGGGG
T ss_pred EEccCCCCccccHhhcC
Confidence 7777776 555554433
No 48
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.27 E-value=7.7e-12 Score=122.05 Aligned_cols=134 Identities=18% Similarity=0.165 Sum_probs=100.2
Q ss_pred EEeccCCCCCccCCCcc-----eEEeecCCccccch-hhhhhhccc----------cccCccCCCCCCCCEEEeeCCCCC
Q 015983 6 TLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSF-AIELLFRLV----------QEFPEKTSSKDQLLEIHLEGTAIR 69 (397)
Q Consensus 6 ~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~~~i~ 69 (397)
..+++++ .++.+|... .|++++|.++.+|. .+..+++|+ ...|..+..+++|++|+|++|.|+
T Consensus 35 ~c~~~~~-~l~~iP~~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~ 113 (353)
T 2z80_A 35 ICKGSSG-SLNSIPSGLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS 113 (353)
T ss_dssp EEECCST-TCSSCCTTCCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS
T ss_pred EeeCCCC-CcccccccccccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC
Confidence 4555554 566666432 27777777777765 455555554 233456788889999999999999
Q ss_pred cCCcc-ccCCCCCCEEEecCCCCCCCCCh--hccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCcccc
Q 015983 70 GLPAS-IELLSGNVLLNLKDRKNLKSLPS--TINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 70 ~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~--~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~~ 141 (397)
.+|.. ++.+++|+.|++++ +.+..+|. .+..+++|++|++++|..+..++ ..++.+++|+.|++++|.++.
T Consensus 114 ~~~~~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~ 188 (353)
T 2z80_A 114 NLSSSWFKPLSSLTFLNLLG-NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS 188 (353)
T ss_dssp SCCHHHHTTCTTCSEEECTT-CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred cCCHhHhCCCccCCEEECCC-CCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc
Confidence 88876 78899999999998 57888876 67888999999999876677764 567888889999998887665
No 49
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.27 E-value=3.1e-11 Score=124.19 Aligned_cols=117 Identities=20% Similarity=0.259 Sum_probs=69.3
Q ss_pred CCcceEEeecCCccccch---hhhhhhccc---------cccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEe
Q 015983 19 PDIVQVLWDGTDIRELSF---AIELLFRLV---------QEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNL 86 (397)
Q Consensus 19 P~~~~L~Ls~n~l~~Lp~---si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~L 86 (397)
|.+..|+|++|.++.+|. .+..+++|+ ..+|..+..+++|++|+|++|.++.+|..+. ++|+.|+|
T Consensus 361 ~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~l~~~~~--~~L~~L~L 438 (549)
T 2z81_A 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIP--QTLEVLDV 438 (549)
T ss_dssp TTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSCCCTTSC--TTCSEEEC
T ss_pred ccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCcccccchhc--CCceEEEC
Confidence 344445555555555442 233333333 3344444555555555555555555444332 34555555
Q ss_pred cCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983 87 KDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 87 s~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
++ +.+..++ ..+++|++|+|++| .+..+|.. ..+++|+.|++++|.++.++
T Consensus 439 s~-N~l~~~~---~~l~~L~~L~Ls~N-~l~~ip~~-~~l~~L~~L~Ls~N~l~~~~ 489 (549)
T 2z81_A 439 SN-NNLDSFS---LFLPRLQELYISRN-KLKTLPDA-SLFPVLLVMKISRNQLKSVP 489 (549)
T ss_dssp CS-SCCSCCC---CCCTTCCEEECCSS-CCSSCCCG-GGCTTCCEEECCSSCCCCCC
T ss_pred CC-CChhhhc---ccCChhcEEECCCC-ccCcCCCc-ccCccCCEEecCCCccCCcC
Confidence 55 2444433 36789999999995 77889874 67889999999999887643
No 50
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.27 E-value=1.9e-11 Score=117.54 Aligned_cols=125 Identities=10% Similarity=0.095 Sum_probs=92.3
Q ss_pred CCCcceEEeecCCcc-ccchhh--hhhhccc---------cccCccCCCC-----CCCCEEEeeCCCCCcCC-ccccCCC
Q 015983 18 FPDIVQVLWDGTDIR-ELSFAI--ELLFRLV---------QEFPEKTSSK-----DQLLEIHLEGTAIRGLP-ASIELLS 79 (397)
Q Consensus 18 lP~~~~L~Ls~n~l~-~Lp~si--~~L~~L~---------~~~P~~l~~l-----~~L~~L~Ls~~~i~~lP-~si~~L~ 79 (397)
++.+..|+|++|.++ .+|..+ ..+++|+ ..+|..++.+ ++|++|+|++|.|+.+| ..++.++
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~ 173 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFP 173 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCS
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCC
Confidence 566667999999998 677765 6666665 3335555555 88999999999999877 6789999
Q ss_pred CCCEEEecCCCCCCC--CChhc--cCCCcCceeeeecccCCccCCc----ccCCCCCCcEEECCCCcccccc
Q 015983 80 GNVLLNLKDRKNLKS--LPSTI--NGLRCLRMLHLSGCSKLKNAPE----TLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 80 ~L~~L~Ls~c~~l~~--LP~~i--~~L~sL~~L~Ls~C~~L~~lP~----~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
+|+.|+|++|..... +|..+ ..+++|++|++++| .+..+|. .+..+++|+.|++++|.++...
T Consensus 174 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 244 (312)
T 1wwl_A 174 ALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNSLRDAA 244 (312)
T ss_dssp SCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC
T ss_pred CCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCcCCccc
Confidence 999999998543332 34444 78899999999995 5664432 3356788999999999877643
No 51
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.27 E-value=1.7e-11 Score=115.43 Aligned_cols=117 Identities=22% Similarity=0.214 Sum_probs=86.1
Q ss_pred EEeecCCccccch-hhhhhhccc---------cc-cCccCCCCCCCCEEEeeCCCCCcCC-ccccCCCCCCEEEecCCCC
Q 015983 24 VLWDGTDIRELSF-AIELLFRLV---------QE-FPEKTSSKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDRKN 91 (397)
Q Consensus 24 L~Ls~n~l~~Lp~-si~~L~~L~---------~~-~P~~l~~l~~L~~L~Ls~~~i~~lP-~si~~L~~L~~L~Ls~c~~ 91 (397)
|+|++|.++.++. .+..+++|+ .. .+..+..+++|++|+|++|.++.++ ..+..+++|+.|++++ +.
T Consensus 33 L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~-n~ 111 (276)
T 2z62_A 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE-TN 111 (276)
T ss_dssp EECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT-SC
T ss_pred EECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCC-CC
Confidence 5555555555543 344444433 11 2335678889999999999998776 5688899999999998 56
Q ss_pred CCCCCh-hccCCCcCceeeeecccCCcc--CCcccCCCCCCcEEECCCCccccc
Q 015983 92 LKSLPS-TINGLRCLRMLHLSGCSKLKN--APETLGKVESLESAVETVTKFAKA 142 (397)
Q Consensus 92 l~~LP~-~i~~L~sL~~L~Ls~C~~L~~--lP~~~~~L~~L~~L~ls~n~~~~L 142 (397)
+..++. .+..+++|++|++++| .+.. +|..++.+++|+.|++++|.++.+
T Consensus 112 l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 112 LASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred ccccCchhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 777755 6888899999999985 5554 688888899999999999987764
No 52
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.26 E-value=1.5e-11 Score=127.69 Aligned_cols=127 Identities=23% Similarity=0.241 Sum_probs=100.8
Q ss_pred CCccCCCc-----ceEEeecCCccccch-hhhhhhccc---------ccc-CccCCCCCCCCEEEeeCCCCCcCCc-ccc
Q 015983 14 KLKKFPDI-----VQVLWDGTDIRELSF-AIELLFRLV---------QEF-PEKTSSKDQLLEIHLEGTAIRGLPA-SIE 76 (397)
Q Consensus 14 ~L~~lP~~-----~~L~Ls~n~l~~Lp~-si~~L~~L~---------~~~-P~~l~~l~~L~~L~Ls~~~i~~lP~-si~ 76 (397)
.|+.+|.. ..|+|++|.|+.+|+ +|.++++|+ ..+ |..+.++++|++|+|++|.|+.+|. .|.
T Consensus 42 ~l~~vP~~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~ 121 (635)
T 4g8a_A 42 NFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS 121 (635)
T ss_dssp CCSSCCSSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGT
T ss_pred CcCccCCCCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhc
Confidence 56677642 238888888888875 566677665 334 3457889999999999999999986 478
Q ss_pred CCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCcc--CCcccCCCCCCcEEECCCCccccc
Q 015983 77 LLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKN--APETLGKVESLESAVETVTKFAKA 142 (397)
Q Consensus 77 ~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~--lP~~~~~L~~L~~L~ls~n~~~~L 142 (397)
.+++|+.|+|++ +.+..+|. .++++++|++|++++| .+.. +|..++.++.|+.|++++|.++.+
T Consensus 122 ~L~~L~~L~Ls~-N~l~~l~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~ 188 (635)
T 4g8a_A 122 GLSSLQKLVAVE-TNLASLENFPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 188 (635)
T ss_dssp TCTTCCEEECTT-SCCCCSTTCCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCCCCEEECCC-CcCCCCChhhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcccccc
Confidence 999999999999 57888875 5889999999999995 4543 577788899999999999987653
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.26 E-value=4.4e-11 Score=120.78 Aligned_cols=122 Identities=19% Similarity=0.162 Sum_probs=76.0
Q ss_pred EEeecCCccccc-hhhhhhhccc----------cccCccCCCCCCCCEEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCC
Q 015983 24 VLWDGTDIRELS-FAIELLFRLV----------QEFPEKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKN 91 (397)
Q Consensus 24 L~Ls~n~l~~Lp-~si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~ 91 (397)
|+|++|.|+.++ ..+.++++|+ ...|..+..+++|++|+|++|.|+.+|.. +..+++|+.|+|++ +.
T Consensus 80 L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~ 158 (452)
T 3zyi_A 80 LNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRN-NP 158 (452)
T ss_dssp EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCS-CC
T ss_pred EECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCC-CC
Confidence 666666666553 3344444443 22334556677777777777777766654 66677777777776 45
Q ss_pred CCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCccccccccc
Q 015983 92 LKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAKAELIA 146 (397)
Q Consensus 92 l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L~~l~ 146 (397)
+..+|. .+.++++|+.|++++|+.++.+|. .+..+++|+.|++++|.++.++.+.
T Consensus 159 l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 215 (452)
T 3zyi_A 159 IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLT 215 (452)
T ss_dssp CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCCCT
T ss_pred cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccccc
Confidence 666654 566677777777777666666664 4566677777777777666555443
No 54
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.25 E-value=3.2e-11 Score=125.69 Aligned_cols=135 Identities=19% Similarity=0.143 Sum_probs=88.9
Q ss_pred cEEeccCCCCCccCCCcc-----eEEeecCCccccch-hhhhhhccc----------cccCccCCCCCCCCEEEeeCCCC
Q 015983 5 KTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSF-AIELLFRLV----------QEFPEKTSSKDQLLEIHLEGTAI 68 (397)
Q Consensus 5 ~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~~~i 68 (397)
++++.+++ .++.+|... .|+|++|.++.++. .+.++++|+ ...|..+.++++|++|+|++|.+
T Consensus 14 ~~~~c~~~-~l~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 14 ITYQCMDQ-KLSKVPDDIPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp TEEECTTS-CCSSCCTTSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEccCC-CcccCCCCCCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 34555554 456665422 27777777776654 455555554 22355567777788888887777
Q ss_pred CcC-CccccCCCCCCEEEecCCCCCCCCC-hhccCCCcCceeeeecccCCc-cCCcccCCCCCCcEEECCCCcccc
Q 015983 69 RGL-PASIELLSGNVLLNLKDRKNLKSLP-STINGLRCLRMLHLSGCSKLK-NAPETLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 69 ~~l-P~si~~L~~L~~L~Ls~c~~l~~LP-~~i~~L~sL~~L~Ls~C~~L~-~lP~~~~~L~~L~~L~ls~n~~~~ 141 (397)
+.+ |..++.+++|+.|+|++ +.+..+| ..++++++|++|++++|.... .+|..++.+++|+.|++++|.++.
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVE-TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTT-SCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred cccChhhcCCcccCCEEEccC-CccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 766 66677778888888877 4566655 567777788888887753322 467777777778888877776654
No 55
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.25 E-value=4.7e-11 Score=121.36 Aligned_cols=131 Identities=12% Similarity=0.155 Sum_probs=93.4
Q ss_pred CCCCcEEeccCCCCCccCCCc------ceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983 1 MKSLKTLVLSGCLKLKKFPDI------VQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG 65 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP~~------~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~ 65 (397)
|++|+.|+|++| .++.+|.+ ..|+|++|.++.+| ++.+++|+ ..+| ++.+++|++|+|++
T Consensus 41 l~~L~~L~Ls~n-~l~~~~~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~ 115 (457)
T 3bz5_A 41 LATLTSLDCHNS-SITDMTGIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDT 115 (457)
T ss_dssp HTTCCEEECCSS-CCCCCTTGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCS
T ss_pred cCCCCEEEccCC-CcccChhhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCC
Confidence 367888999887 45555543 33888888888876 55666554 3333 67788888888888
Q ss_pred CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983 66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
|.++.+| ++.+++|+.|++++ +.+..+| ++.+++|++|++++|..++.++ ++.+++|+.|++++|.++.++
T Consensus 116 N~l~~l~--~~~l~~L~~L~l~~-N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n~l~~l~ 186 (457)
T 3bz5_A 116 NKLTKLD--VSQNPLLTYLNCAR-NTLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFNKITELD 186 (457)
T ss_dssp SCCSCCC--CTTCTTCCEEECTT-SCCSCCC--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSSCCCCCC
T ss_pred CcCCeec--CCCCCcCCEEECCC-Cccceec--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCCccceec
Confidence 8888876 77888888888887 5677665 6677777777777776666663 566677777777777666544
No 56
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.25 E-value=9.9e-12 Score=133.53 Aligned_cols=92 Identities=23% Similarity=0.286 Sum_probs=81.0
Q ss_pred cCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCC
Q 015983 48 FPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVE 127 (397)
Q Consensus 48 ~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~ 127 (397)
+|..+..+++|++|+|++|.|+.+|..|+.|++|+.|+|++ |.+..+|..++.|++|++|+|++| .+..+|..++.|+
T Consensus 239 l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~L~~N-~l~~lp~~~~~l~ 316 (727)
T 4b8c_D 239 ISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSH-NRLTSLPAELGSCFQLKYFYFFDN-MVTTLPWEFGNLC 316 (727)
T ss_dssp CCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTT-SCCSSCCSSGGGGTTCSEEECCSS-CCCCCCSSTTSCT
T ss_pred CChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcC-CcCCccChhhcCCCCCCEEECCCC-CCCccChhhhcCC
Confidence 33334567889999999999999999999999999999998 678899999999999999999995 7889999899999
Q ss_pred CCcEEECCCCcccc
Q 015983 128 SLESAVETVTKFAK 141 (397)
Q Consensus 128 ~L~~L~ls~n~~~~ 141 (397)
+|+.|++++|.++.
T Consensus 317 ~L~~L~L~~N~l~~ 330 (727)
T 4b8c_D 317 NLQFLGVEGNPLEK 330 (727)
T ss_dssp TCCCEECTTSCCCS
T ss_pred CccEEeCCCCccCC
Confidence 99999999998874
No 57
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.25 E-value=2.2e-11 Score=118.78 Aligned_cols=85 Identities=21% Similarity=0.201 Sum_probs=43.5
Q ss_pred cCCCCCCCCEEEeeCCCCCcCC-ccccCCCCCCEEEecCCCCCCCCChh-ccCCCcCceeeeecccCCccCCc--ccCCC
Q 015983 51 KTSSKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDRKNLKSLPST-INGLRCLRMLHLSGCSKLKNAPE--TLGKV 126 (397)
Q Consensus 51 ~l~~l~~L~~L~Ls~~~i~~lP-~si~~L~~L~~L~Ls~c~~l~~LP~~-i~~L~sL~~L~Ls~C~~L~~lP~--~~~~L 126 (397)
.+..+++|++|+|++|.++.++ ..+..+++|+.|+|++ +.+..+|.. +.++++|++|++++| .+..+|. .+..+
T Consensus 71 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l 148 (353)
T 2z80_A 71 DLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY-NYLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGETSLFSHL 148 (353)
T ss_dssp TTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCSSCCHHHHTTCTTCSEEECTTC-CCSSSCSSCSCTTC
T ss_pred HhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC-CcCCcCCHhHhCCCccCCEEECCCC-CCcccCchhhhccC
Confidence 3455555555555555555443 3355555555555555 345555443 455555555555552 4444444 34555
Q ss_pred CCCcEEECCCC
Q 015983 127 ESLESAVETVT 137 (397)
Q Consensus 127 ~~L~~L~ls~n 137 (397)
++|+.|++++|
T Consensus 149 ~~L~~L~l~~n 159 (353)
T 2z80_A 149 TKLQILRVGNM 159 (353)
T ss_dssp TTCCEEEEEES
T ss_pred CCCcEEECCCC
Confidence 55555555554
No 58
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.25 E-value=5.5e-11 Score=114.74 Aligned_cols=138 Identities=19% Similarity=0.243 Sum_probs=104.5
Q ss_pred CCCCcEEeccCCCCCccCCCc-----ceEEeecCCccccchh-hhhhhccc------------cccCccCCCCCCCCEEE
Q 015983 1 MKSLKTLVLSGCLKLKKFPDI-----VQVLWDGTDIRELSFA-IELLFRLV------------QEFPEKTSSKDQLLEIH 62 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP~~-----~~L~Ls~n~l~~Lp~s-i~~L~~L~------------~~~P~~l~~l~~L~~L~ 62 (397)
|++|++|+|++| .++.+|.. ..|++++|.++.++.. +..+++|+ ...|..+..+++|++|+
T Consensus 99 l~~L~~L~Ls~n-~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~ 177 (330)
T 1xku_A 99 LVKLERLYLSKN-QLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIR 177 (330)
T ss_dssp CTTCCEEECCSS-CCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEE
T ss_pred CCCCCEEECCCC-cCCccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEE
Confidence 578999999998 56777643 3399999999988764 56666665 14456677888999999
Q ss_pred eeCCCCCcCCccccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCccc
Q 015983 63 LEGTAIRGLPASIELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 63 Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~ 140 (397)
+++|.++.+|..+. ++|+.|++++ +.+..+ |..+..+++|++|++++| .+..++ ..+..+++|+.|++++|.++
T Consensus 178 l~~n~l~~l~~~~~--~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 253 (330)
T 1xku_A 178 IADTNITTIPQGLP--PSLTELHLDG-NKITKVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLV 253 (330)
T ss_dssp CCSSCCCSCCSSCC--TTCSEEECTT-SCCCEECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCS
T ss_pred CCCCccccCCcccc--ccCCEEECCC-CcCCccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCc
Confidence 99999988887664 7888888888 456655 567888888888888885 455544 46777888888888888777
Q ss_pred ccc
Q 015983 141 KAE 143 (397)
Q Consensus 141 ~L~ 143 (397)
.++
T Consensus 254 ~lp 256 (330)
T 1xku_A 254 KVP 256 (330)
T ss_dssp SCC
T ss_pred cCC
Confidence 554
No 59
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.25 E-value=4.4e-11 Score=120.35 Aligned_cols=93 Identities=19% Similarity=0.245 Sum_probs=52.6
Q ss_pred cCCCCCCCCEEEeeCCCCCcCCc-cccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCC
Q 015983 51 KTSSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVE 127 (397)
Q Consensus 51 ~l~~l~~L~~L~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~ 127 (397)
.+..+++|++|+|++|.|+.+|. .+..+++|+.|+|++ +.+..+|. .+.++++|++|++++|+.+..+|. .+..++
T Consensus 107 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~ 185 (440)
T 3zyj_A 107 AFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRN-NPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLS 185 (440)
T ss_dssp GGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCS-CCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCS
T ss_pred hccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCC-CcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhccc
Confidence 34555666666666666665554 355566666666665 34555543 455556666666666555555543 355555
Q ss_pred CCcEEECCCCccccccc
Q 015983 128 SLESAVETVTKFAKAEL 144 (397)
Q Consensus 128 ~L~~L~ls~n~~~~L~~ 144 (397)
+|+.|++++|.++.++.
T Consensus 186 ~L~~L~L~~n~l~~~~~ 202 (440)
T 3zyj_A 186 NLRYLNLAMCNLREIPN 202 (440)
T ss_dssp SCCEEECTTSCCSSCCC
T ss_pred ccCeecCCCCcCccccc
Confidence 66666666665555443
No 60
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.24 E-value=4.8e-11 Score=115.64 Aligned_cols=138 Identities=20% Similarity=0.321 Sum_probs=88.5
Q ss_pred CCCCcEEeccCCCCCccCC------CcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983 1 MKSLKTLVLSGCLKLKKFP------DIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG 65 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP------~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~ 65 (397)
+++|+.|++++| .+..+| .+..|++++|.++.+|. +..+++|+ ..+| .+..+++|++|+|++
T Consensus 43 l~~L~~L~l~~~-~i~~~~~~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~ 119 (347)
T 4fmz_A 43 LESITKLVVAGE-KVASIQGIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNE 119 (347)
T ss_dssp HTTCSEEECCSS-CCCCCTTGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTT
T ss_pred cccccEEEEeCC-ccccchhhhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcC
Confidence 367899999997 444444 44449999999998876 65555544 2232 356666777777777
Q ss_pred CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccccc
Q 015983 66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELI 145 (397)
Q Consensus 66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l 145 (397)
|.++.+|. +..+++|+.|++++|..+..++. +..+++|++|++++| .+..++. +..+++|+.|++++|.+..++.+
T Consensus 120 n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~-~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~ 195 (347)
T 4fmz_A 120 DNISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTES-KVKDVTP-IANLTDLYSLSLNYNQIEDISPL 195 (347)
T ss_dssp SCCCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSS-CCCCCGG-GGGCTTCSEEECTTSCCCCCGGG
T ss_pred CcccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCC-CcCCchh-hccCCCCCEEEccCCcccccccc
Confidence 77766665 66667777777776555554444 666677777777764 3444443 55666677777777666554443
No 61
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.24 E-value=1e-11 Score=119.23 Aligned_cols=140 Identities=16% Similarity=0.073 Sum_probs=99.8
Q ss_pred CCCcEEeccCCCCCccCCCc---------ceEEeecCCcccc-c----hhhhhhhccc----------cccCccCCCCCC
Q 015983 2 KSLKTLVLSGCLKLKKFPDI---------VQVLWDGTDIREL-S----FAIELLFRLV----------QEFPEKTSSKDQ 57 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP~~---------~~L~Ls~n~l~~L-p----~si~~L~~L~----------~~~P~~l~~l~~ 57 (397)
++|+.|+|++|...+..|.. ..|+|++|.++.. + ..+..+++|+ ...|..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 46899999998654444433 2389999988852 2 1223344443 344567788999
Q ss_pred CCEEEeeCCCCCc---CC--ccccCCCCCCEEEecCCCCCCCCChh----ccCCCcCceeeeecccCCccC-CcccCCC-
Q 015983 58 LLEIHLEGTAIRG---LP--ASIELLSGNVLLNLKDRKNLKSLPST----INGLRCLRMLHLSGCSKLKNA-PETLGKV- 126 (397)
Q Consensus 58 L~~L~Ls~~~i~~---lP--~si~~L~~L~~L~Ls~c~~l~~LP~~----i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L- 126 (397)
|++|+|++|.+.. ++ ..++.+++|+.|+|++ +.+..+|.. +..+++|++|+|++|. +..+ |..++.+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~~~~ 248 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRN-TGMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAPRCM 248 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCS-SCCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCSSCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCC-CCCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHHhcc
Confidence 9999999998763 43 2347888999999998 577777652 5677999999999964 5544 7766666
Q ss_pred --CCCcEEECCCCcccccc
Q 015983 127 --ESLESAVETVTKFAKAE 143 (397)
Q Consensus 127 --~~L~~L~ls~n~~~~L~ 143 (397)
++|+.|++++|.++.++
T Consensus 249 ~~~~L~~L~Ls~N~l~~lp 267 (310)
T 4glp_A 249 WSSALNSLNLSFAGLEQVP 267 (310)
T ss_dssp CCTTCCCEECCSSCCCSCC
T ss_pred CcCcCCEEECCCCCCCchh
Confidence 68999999999887654
No 62
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.24 E-value=5.1e-11 Score=117.69 Aligned_cols=46 Identities=17% Similarity=0.057 Sum_probs=36.7
Q ss_pred ccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccc
Q 015983 99 INGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAEL 144 (397)
Q Consensus 99 i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~ 144 (397)
+..+++|++|++++|......|..+..+++|+.|++++|.++.++.
T Consensus 244 l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 289 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 289 (390)
T ss_dssp GGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC
T ss_pred HcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc
Confidence 5667889999999965444457888999999999999998877543
No 63
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.24 E-value=3.4e-11 Score=113.28 Aligned_cols=139 Identities=22% Similarity=0.187 Sum_probs=107.1
Q ss_pred CCCcEEeccCCCCCcc--------CCCcceEEeecCCccccch-hhhhhhccc----------cccCccCCCCCCCCEEE
Q 015983 2 KSLKTLVLSGCLKLKK--------FPDIVQVLWDGTDIRELSF-AIELLFRLV----------QEFPEKTSSKDQLLEIH 62 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~--------lP~~~~L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~~l~~l~~L~~L~ 62 (397)
++|++|+|++|. ++. +|.+..|+|++|.++.++. .+..+++|+ ...|..+..+++|++|+
T Consensus 28 ~~l~~L~ls~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (276)
T 2z62_A 28 FSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (276)
T ss_dssp TTCCEEECTTCC-CCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred CCccEEECCCCc-ccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence 368999999983 433 3445559999999998876 566666665 33446788999999999
Q ss_pred eeCCCCCcCCc-cccCCCCCCEEEecCCCCCCC--CChhccCCCcCceeeeecccCCccCC-cccCCCCCCc----EEEC
Q 015983 63 LEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKS--LPSTINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLE----SAVE 134 (397)
Q Consensus 63 Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~--LP~~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~----~L~l 134 (397)
+++|.++.++. .++.+++|+.|++++ +.+.. +|..+..+++|++|++++| .+..+| ..+..+..|+ .|++
T Consensus 107 l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~l~l~L~l 184 (276)
T 2z62_A 107 AVETNLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDL 184 (276)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCS-SCCCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHHTCTTCCEEEEC
T ss_pred CCCCCccccCchhcccCCCCCEEECcC-CccceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhhhccccceeeec
Confidence 99999998876 689999999999998 56766 6889999999999999995 566654 4455444454 7899
Q ss_pred CCCcccccc
Q 015983 135 TVTKFAKAE 143 (397)
Q Consensus 135 s~n~~~~L~ 143 (397)
++|.++.++
T Consensus 185 s~n~l~~~~ 193 (276)
T 2z62_A 185 SLNPMNFIQ 193 (276)
T ss_dssp CSSCCCEEC
T ss_pred CCCcccccC
Confidence 999876543
No 64
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.23 E-value=5.6e-11 Score=115.13 Aligned_cols=134 Identities=16% Similarity=0.281 Sum_probs=94.4
Q ss_pred CCCCcEEeccCCCC-----CccCCCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCC
Q 015983 1 MKSLKTLVLSGCLK-----LKKFPDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGT 66 (397)
Q Consensus 1 L~sL~~L~LsgC~~-----L~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~ 66 (397)
+++|+.|++++|.. +..+|.+..|++++|.++.++. +..+++|. ..++. +..+++|++|+|++|
T Consensus 154 l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n 231 (347)
T 4fmz_A 154 MTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNN 231 (347)
T ss_dssp CTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSS
T ss_pred CCCCcEEEecCCCcCCchhhccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCC
Confidence 46788999988842 2334555558888888888776 55555554 22222 566778888888888
Q ss_pred CCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983 67 AIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 67 ~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~ 141 (397)
.++.+|. +..+++|+.|++++ +.+..++ .+..+++|++|++++| .+..+| .+..+++|+.|++++|.++.
T Consensus 232 ~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~-~~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~ 301 (347)
T 4fmz_A 232 KITDLSP-LANLSQLTWLEIGT-NQISDIN-AVKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGN 301 (347)
T ss_dssp CCCCCGG-GTTCTTCCEEECCS-SCCCCCG-GGTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCG
T ss_pred ccCCCcc-hhcCCCCCEEECCC-CccCCCh-hHhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCC
Confidence 8887776 77788888888887 4676665 3677788888888875 566664 35677778888888877654
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.23 E-value=1.7e-11 Score=118.08 Aligned_cols=137 Identities=15% Similarity=0.114 Sum_probs=59.2
Q ss_pred CCCCcEEeccCCCCCccC---CCcceEEeecCCccccchhh-hhhhccc-------cccCccCCCCCCCCEEEeeCCCCC
Q 015983 1 MKSLKTLVLSGCLKLKKF---PDIVQVLWDGTDIRELSFAI-ELLFRLV-------QEFPEKTSSKDQLLEIHLEGTAIR 69 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~l---P~~~~L~Ls~n~l~~Lp~si-~~L~~L~-------~~~P~~l~~l~~L~~L~Ls~~~i~ 69 (397)
+++|++|+|++| .++.+ |.+..|++++|.++.++... .+|+.|. ...|..+..+++|++|+|++|.++
T Consensus 79 l~~L~~L~Ls~n-~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (317)
T 3o53_A 79 LSTLRTLDLNNN-YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (317)
T ss_dssp CTTCCEEECCSS-EEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCC
T ss_pred cCCCCEEECcCC-ccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCC
Confidence 356677777766 23332 23333555555554433221 1122221 111223344445555555555554
Q ss_pred cCC-ccc-cCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983 70 GLP-ASI-ELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 70 ~lP-~si-~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~ 141 (397)
.++ ..+ ..+++|+.|+|++ +.+..+|.. ..+++|++|++++ +.+..+|..+..+++|+.|++++|.++.
T Consensus 158 ~~~~~~~~~~l~~L~~L~L~~-N~l~~~~~~-~~l~~L~~L~Ls~-N~l~~l~~~~~~l~~L~~L~L~~N~l~~ 228 (317)
T 3o53_A 158 TVNFAELAASSDTLEHLNLQY-NFIYDVKGQ-VVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLVL 228 (317)
T ss_dssp EEEGGGGGGGTTTCCEEECTT-SCCCEEECC-CCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSCCCE
T ss_pred cccHHHHhhccCcCCEEECCC-CcCcccccc-cccccCCEEECCC-CcCCcchhhhcccCcccEEECcCCcccc
Confidence 432 222 2344555555554 344444332 2244555555554 2344444444444455555555554443
No 66
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.23 E-value=4.4e-11 Score=125.27 Aligned_cols=142 Identities=14% Similarity=0.141 Sum_probs=88.0
Q ss_pred CCCCcEEeccCCCCCccCC--------CcceEEeecCCccccchh-hhhhhccc---------cccCcc-CCCCCCCCEE
Q 015983 1 MKSLKTLVLSGCLKLKKFP--------DIVQVLWDGTDIRELSFA-IELLFRLV---------QEFPEK-TSSKDQLLEI 61 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP--------~~~~L~Ls~n~l~~Lp~s-i~~L~~L~---------~~~P~~-l~~l~~L~~L 61 (397)
+++|+.|+|++|. +..+| .+..|+|++|.++.+|+. ++.+++|. ..+|.. ++.+++|++|
T Consensus 74 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L 152 (597)
T 3oja_B 74 FRQVELLNLNDLQ-IEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTL 152 (597)
T ss_dssp CCCCSEEECTTSC-CCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEECCCCC-CCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCCCHHHhccCCCCCEE
Confidence 3566777777663 33222 233366666666666543 34555544 333433 3566666666
Q ss_pred EeeCCCCCcCCc-cccCCCCCCEEEecCCCCCCCC---------------------------------------------
Q 015983 62 HLEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKSL--------------------------------------------- 95 (397)
Q Consensus 62 ~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~L--------------------------------------------- 95 (397)
+|++|.++.++. .++.+++|+.|+|++| .+..+
T Consensus 153 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~~~ 231 (597)
T 3oja_B 153 SMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN 231 (597)
T ss_dssp ECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECSCC
T ss_pred EeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcChhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccccC
Confidence 666666665543 4566666666666652 33322
Q ss_pred ---------------ChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccc
Q 015983 96 ---------------PSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAEL 144 (397)
Q Consensus 96 ---------------P~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~ 144 (397)
+..+..+++|+.|+|++|......|..++.+++|+.|++++|.++.++.
T Consensus 232 ~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~ 295 (597)
T 3oja_B 232 VELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL 295 (597)
T ss_dssp SCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEEC
T ss_pred CCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCc
Confidence 1235677889999999965555568888999999999999998877543
No 67
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.23 E-value=5.8e-11 Score=121.54 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=104.8
Q ss_pred CCCcEEeccCCCCC-----ccCCCcceEEeecCCccc-cchhhhhhhccc---------c---ccCccCCCCCCCCEEEe
Q 015983 2 KSLKTLVLSGCLKL-----KKFPDIVQVLWDGTDIRE-LSFAIELLFRLV---------Q---EFPEKTSSKDQLLEIHL 63 (397)
Q Consensus 2 ~sL~~L~LsgC~~L-----~~lP~~~~L~Ls~n~l~~-Lp~si~~L~~L~---------~---~~P~~l~~l~~L~~L~L 63 (397)
.+|+.|++++|... ..+|.+..|++++|.++. +|..+..+++|+ . .+|..++.+++|++|+|
T Consensus 302 ~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~L 381 (520)
T 2z7x_B 302 MNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDI 381 (520)
T ss_dssp CCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEEC
T ss_pred CceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEEC
Confidence 35888888887432 234455558888888886 677777666665 2 45566788899999999
Q ss_pred eCCCCCc-CCcc-ccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983 64 EGTAIRG-LPAS-IELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 64 s~~~i~~-lP~s-i~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~ 141 (397)
++|.++. +|.. +..+++|+.|++++|.....+|..+. ++|++|++++| .+..+|..+..+++|+.|++++|.++.
T Consensus 382 s~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~ 458 (520)
T 2z7x_B 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQLKS 458 (520)
T ss_dssp CSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSCCCC
T ss_pred CCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCC-cccccchhhhcCCCCCEEECCCCcCCc
Confidence 9999987 8875 77888999999998543345565442 68999999985 677888877788999999999998876
Q ss_pred ccc
Q 015983 142 AEL 144 (397)
Q Consensus 142 L~~ 144 (397)
++.
T Consensus 459 l~~ 461 (520)
T 2z7x_B 459 VPD 461 (520)
T ss_dssp CCT
T ss_pred cCH
Confidence 553
No 68
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.23 E-value=1.1e-10 Score=102.51 Aligned_cols=122 Identities=20% Similarity=0.330 Sum_probs=96.0
Q ss_pred CcEEeccCCCCCccCCCc-----ceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc-ccC
Q 015983 4 LKTLVLSGCLKLKKFPDI-----VQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS-IEL 77 (397)
Q Consensus 4 L~~L~LsgC~~L~~lP~~-----~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s-i~~ 77 (397)
.+.++++++ .++.+|.. ..|++++|.++.+|... +..+++|++|+|++|.|+.+|.. +..
T Consensus 9 ~~~l~~~~~-~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~l~~n~l~~~~~~~~~~ 74 (177)
T 2o6r_A 9 GTEIRCNSK-GLTSVPTGIPSSATRLELESNKLQSLPHGV-------------FDKLTQLTKLSLSQNQIQSLPDGVFDK 74 (177)
T ss_dssp TTEEECCSS-CCSSCCTTCCTTCSEEECCSSCCCCCCTTT-------------TTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CCEEEecCC-CCccCCCCCCCCCcEEEeCCCcccEeCHHH-------------hcCcccccEEECCCCcceEeChhHccC
Confidence 456788776 56666643 23888888888776532 46788899999999999988865 688
Q ss_pred CCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCcc-cCCCCCCcEEECCCCcccc
Q 015983 78 LSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPET-LGKVESLESAVETVTKFAK 141 (397)
Q Consensus 78 L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~~-~~~L~~L~~L~ls~n~~~~ 141 (397)
+++|+.|+|++ +.+..+|. .+..+++|++|++++| .+..+|.. +..+++|+.|++++|.+..
T Consensus 75 l~~L~~L~l~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 75 LTKLTILYLHE-NKLQSLPNGVFDKLTQLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccCEEECCC-CCccccCHHHhhCCcccCEEECcCC-cceEeCHHHhcCCcccCEEEecCCCeec
Confidence 99999999998 67888876 4678999999999995 67777764 5778999999999997653
No 69
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.23 E-value=3.5e-11 Score=126.71 Aligned_cols=134 Identities=19% Similarity=0.274 Sum_probs=110.3
Q ss_pred CCCCcEEeccCCCCCccC------CCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983 1 MKSLKTLVLSGCLKLKKF------PDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG 65 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~l------P~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~ 65 (397)
|++|+.|+|++|. +..+ +.+..|+|++|.|+.+| .+..|++|+ ..+ +.+..|++|+.|+|++
T Consensus 64 l~~L~~L~Ls~N~-l~~~~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~ 140 (605)
T 1m9s_A 64 LPNVTKLFLNGNK-LTDIKPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGN 140 (605)
T ss_dssp CTTCCEEECTTSC-CCCCGGGGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCC-GGGGGCTTCSEEECCS
T ss_pred CCCCCEEEeeCCC-CCCChhhccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCC-ccccCCCccCEEECCC
Confidence 5789999999984 4444 44555999999999877 566666665 333 3467899999999999
Q ss_pred CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccc
Q 015983 66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKA 142 (397)
Q Consensus 66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L 142 (397)
|.|+.+ ..+..+++|+.|+|++ +.+..++. +..+++|+.|+|++| .+..+| .+..+++|+.|++++|.+...
T Consensus 141 N~l~~l-~~l~~l~~L~~L~Ls~-N~l~~~~~-l~~l~~L~~L~Ls~N-~i~~l~-~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 141 NKITDI-TVLSRLTKLDTLSLED-NQISDIVP-LAGLTKLQNLYLSKN-HISDLR-ALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp SCCCCC-GGGGSCTTCSEEECCS-SCCCCCGG-GTTCTTCCEEECCSS-CCCBCG-GGTTCTTCSEEECCSEEEECC
T ss_pred CccCCc-hhhcccCCCCEEECcC-CcCCCchh-hccCCCCCEEECcCC-CCCCCh-HHccCCCCCEEEccCCcCcCC
Confidence 999988 6789999999999999 57888866 899999999999995 777776 478899999999999988764
No 70
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.22 E-value=3.7e-11 Score=118.72 Aligned_cols=117 Identities=14% Similarity=0.073 Sum_probs=88.1
Q ss_pred EEeecCCccccchhh-hhhhccc------cccCccCCCCCCCCEEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCC
Q 015983 24 VLWDGTDIRELSFAI-ELLFRLV------QEFPEKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSL 95 (397)
Q Consensus 24 L~Ls~n~l~~Lp~si-~~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~L 95 (397)
|++++|.+..+|..+ .+|+.|. .. +..+..+++|++|+|++|.++.+ |..+..+++|+.|+|++ +.+..+
T Consensus 210 L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~-~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~ 287 (390)
T 3o6n_A 210 LDASHNSINVVRGPVNVELTILKLQHNNLTD-TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN-NRLVAL 287 (390)
T ss_dssp EECCSSCCCEEECCCCSSCCEEECCSSCCCC-CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCS-SCCCEE
T ss_pred EECCCCeeeeccccccccccEEECCCCCCcc-cHHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCC-CcCccc
Confidence 555555555554332 1233332 11 23466788999999999999865 67788999999999998 678888
Q ss_pred ChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983 96 PSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 96 P~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
|..+..+++|++|++++| .+..+|..++.+++|+.|++++|.++.++
T Consensus 288 ~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~i~~~~ 334 (390)
T 3o6n_A 288 NLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNSIVTLK 334 (390)
T ss_dssp ECSSSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSCCCCCC
T ss_pred CcccCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCccceeC
Confidence 887888899999999995 77788887888889999999999887654
No 71
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.21 E-value=5.9e-11 Score=119.17 Aligned_cols=95 Identities=17% Similarity=0.128 Sum_probs=68.5
Q ss_pred cCccCCCCCCCCEEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccCCcccCC
Q 015983 48 FPEKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNAPETLGK 125 (397)
Q Consensus 48 ~P~~l~~l~~L~~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~ 125 (397)
.|..++.+++|++|+|++|.++.+ |..++.+++|+.|+|++ +.+..+ |..+..+++|++|+|++|......|..+..
T Consensus 291 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 369 (455)
T 3v47_A 291 LKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ-NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLG 369 (455)
T ss_dssp CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS-SCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTT
T ss_pred chhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCC-CccCCcChhHhcCcccCCEEECCCCcccccChhhccc
Confidence 455567778888888888888766 44677888888888887 455555 556777888888888885433334667777
Q ss_pred CCCCcEEECCCCcccccc
Q 015983 126 VESLESAVETVTKFAKAE 143 (397)
Q Consensus 126 L~~L~~L~ls~n~~~~L~ 143 (397)
+++|+.|++++|.++.++
T Consensus 370 l~~L~~L~L~~N~l~~~~ 387 (455)
T 3v47_A 370 LPNLKELALDTNQLKSVP 387 (455)
T ss_dssp CTTCCEEECCSSCCSCCC
T ss_pred cccccEEECCCCccccCC
Confidence 888888888888776644
No 72
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.21 E-value=4.7e-11 Score=124.83 Aligned_cols=127 Identities=17% Similarity=0.185 Sum_probs=97.8
Q ss_pred CCCcEEeccCCCCCccCCCc----ceEEeecCCccccchhhh-hhhccc------cccCccCCCCCCCCEEEeeCCCCCc
Q 015983 2 KSLKTLVLSGCLKLKKFPDI----VQVLWDGTDIRELSFAIE-LLFRLV------QEFPEKTSSKDQLLEIHLEGTAIRG 70 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP~~----~~L~Ls~n~l~~Lp~si~-~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~~ 70 (397)
++|+.|+|++| .++.+|.. ..|+|++|.|+.+|. +. +|+.|. ..+|. .+++|+.|+|++|.|+.
T Consensus 80 ~~L~~L~Ls~N-~l~~ip~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~l~~ 154 (571)
T 3cvr_A 80 PQITVLEITQN-ALISLPELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTMLPE---LPALLEYINADNNQLTM 154 (571)
T ss_dssp TTCSEEECCSS-CCSCCCCCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC
T ss_pred CCCCEEECcCC-CCcccccccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCCCCC---cCccccEEeCCCCccCc
Confidence 56899999998 56677732 239999999998888 64 444443 34666 67889999999999999
Q ss_pred CCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCC-------cEEECCCCcccccc
Q 015983 71 LPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESL-------ESAVETVTKFAKAE 143 (397)
Q Consensus 71 lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L-------~~L~ls~n~~~~L~ 143 (397)
+|. .+++|+.|+|++ |.+..+|. +. ++|++|+|++| .+..+|. +.. +| +.|++++|.++.++
T Consensus 155 lp~---~l~~L~~L~Ls~-N~L~~lp~-l~--~~L~~L~Ls~N-~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp 223 (571)
T 3cvr_A 155 LPE---LPTSLEVLSVRN-NQLTFLPE-LP--ESLEALDVSTN-LLESLPA-VPV--RNHHSEETEIFFRCRENRITHIP 223 (571)
T ss_dssp CCC---CCTTCCEEECCS-SCCSCCCC-CC--TTCCEEECCSS-CCSSCCC-CC----------CCEEEECCSSCCCCCC
T ss_pred CCC---cCCCcCEEECCC-CCCCCcch-hh--CCCCEEECcCC-CCCchhh-HHH--hhhcccccceEEecCCCcceecC
Confidence 887 578999999998 57888988 65 89999999984 7788888 554 67 89999999888765
Q ss_pred c
Q 015983 144 L 144 (397)
Q Consensus 144 ~ 144 (397)
.
T Consensus 224 ~ 224 (571)
T 3cvr_A 224 E 224 (571)
T ss_dssp G
T ss_pred H
Confidence 4
No 73
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.21 E-value=1.1e-11 Score=105.78 Aligned_cols=88 Identities=23% Similarity=0.234 Sum_probs=64.1
Q ss_pred CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCC-CChhccCCCcCceeeeecccCCccCC--cccCCCCCC
Q 015983 53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKS-LPSTINGLRCLRMLHLSGCSKLKNAP--ETLGKVESL 129 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~-LP~~i~~L~sL~~L~Ls~C~~L~~lP--~~~~~L~~L 129 (397)
..+++|++|+|++|.++.+ ..++.+++|+.|++++ +.+.. +|..+..+++|++|++++| .+..+| ..++.+++|
T Consensus 39 ~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~ls~N-~i~~~~~~~~~~~l~~L 115 (149)
T 2je0_A 39 DEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSD-NRVSGGLEVLAEKCPNLTHLNLSGN-KIKDLSTIEPLKKLENL 115 (149)
T ss_dssp TTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCS-SCCCSCTHHHHHHCTTCCEEECTTS-CCCSHHHHGGGGGCTTC
T ss_pred hhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCC-CcccchHHHHhhhCCCCCEEECCCC-cCCChHHHHHHhhCCCC
Confidence 5667788888888877777 6677778888888887 45655 6776666788888888874 466654 567777788
Q ss_pred cEEECCCCcccccc
Q 015983 130 ESAVETVTKFAKAE 143 (397)
Q Consensus 130 ~~L~ls~n~~~~L~ 143 (397)
+.|++++|.++.++
T Consensus 116 ~~L~l~~N~l~~~~ 129 (149)
T 2je0_A 116 KSLDLFNCEVTNLN 129 (149)
T ss_dssp CEEECTTCGGGGST
T ss_pred CEEeCcCCcccchH
Confidence 88888888776654
No 74
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.20 E-value=2.1e-11 Score=116.96 Aligned_cols=144 Identities=14% Similarity=0.086 Sum_probs=108.7
Q ss_pred CCCCcEEeccCCCCCcc-----------CCCcceEEeecCCccccch-hhhhhhccc------cc------cC--ccCCC
Q 015983 1 MKSLKTLVLSGCLKLKK-----------FPDIVQVLWDGTDIRELSF-AIELLFRLV------QE------FP--EKTSS 54 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~-----------lP~~~~L~Ls~n~l~~Lp~-si~~L~~L~------~~------~P--~~l~~ 54 (397)
+++|++|+|++|..... +|.+..|+|++|.+..++. .+..+++|+ .. ++ ..++.
T Consensus 116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 195 (310)
T 4glp_A 116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHK 195 (310)
T ss_dssp CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTS
T ss_pred CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhc
Confidence 46789999999854332 4556669999999987764 555666655 11 32 22368
Q ss_pred CCCCCEEEeeCCCCCcCCcc----ccCCCCCCEEEecCCCCCCCC-ChhccCC---CcCceeeeecccCCccCCcccCCC
Q 015983 55 KDQLLEIHLEGTAIRGLPAS----IELLSGNVLLNLKDRKNLKSL-PSTINGL---RCLRMLHLSGCSKLKNAPETLGKV 126 (397)
Q Consensus 55 l~~L~~L~Ls~~~i~~lP~s----i~~L~~L~~L~Ls~c~~l~~L-P~~i~~L---~sL~~L~Ls~C~~L~~lP~~~~~L 126 (397)
+++|++|+|++|.++.+|.. ++.+++|+.|+|++ |.+..+ |..+..+ ++|++|+|++ +.+..+|..+.
T Consensus 196 l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~p~~~~~~~~~~~L~~L~Ls~-N~l~~lp~~~~-- 271 (310)
T 4glp_A 196 FPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSH-NSLRATVNPSAPRCMWSSALNSLNLSF-AGLEQVPKGLP-- 271 (310)
T ss_dssp SCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTT-SCCCCCCCSCCSSCCCCTTCCCEECCS-SCCCSCCSCCC--
T ss_pred CCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCC-CCCCccchhhHHhccCcCcCCEEECCC-CCCCchhhhhc--
Confidence 89999999999999877653 57889999999999 567766 8777766 6999999999 47779988764
Q ss_pred CCCcEEECCCCccccccccccC
Q 015983 127 ESLESAVETVTKFAKAELIAQK 148 (397)
Q Consensus 127 ~~L~~L~ls~n~~~~L~~l~~l 148 (397)
++|+.|++++|.++.++.+..+
T Consensus 272 ~~L~~L~Ls~N~l~~~~~~~~l 293 (310)
T 4glp_A 272 AKLRVLDLSSNRLNRAPQPDEL 293 (310)
T ss_dssp SCCSCEECCSCCCCSCCCTTSC
T ss_pred CCCCEEECCCCcCCCCchhhhC
Confidence 7899999999998877654433
No 75
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.20 E-value=5.7e-11 Score=109.44 Aligned_cols=130 Identities=12% Similarity=0.211 Sum_probs=105.9
Q ss_pred CCCCccCCC----cceEEeecCCccccch-hhhhhhccc----------cccCc-cCCCCCCCCEEEeeC-CCCCcCCc-
Q 015983 12 CLKLKKFPD----IVQVLWDGTDIRELSF-AIELLFRLV----------QEFPE-KTSSKDQLLEIHLEG-TAIRGLPA- 73 (397)
Q Consensus 12 C~~L~~lP~----~~~L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~-~l~~l~~L~~L~Ls~-~~i~~lP~- 73 (397)
|..++.+|. +..|+|++|.++.+|. .+..+++|+ ..+|. .+..+++|++|+|++ |.++.+|.
T Consensus 20 c~~l~~ip~~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 20 CKDIQRIPSLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp ECSCSSCCCCCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccCccccCCCCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 445778876 2229999999999987 566666665 22443 567899999999999 99999885
Q ss_pred cccCCCCCCEEEecCCCCCCCCChhccCCCcCc---eeeeecccCCccCCc-ccCCCCCCc-EEECCCCcccccc
Q 015983 74 SIELLSGNVLLNLKDRKNLKSLPSTINGLRCLR---MLHLSGCSKLKNAPE-TLGKVESLE-SAVETVTKFAKAE 143 (397)
Q Consensus 74 si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~---~L~Ls~C~~L~~lP~-~~~~L~~L~-~L~ls~n~~~~L~ 143 (397)
.+..+++|+.|++++ +.+..+|. +..+++|+ +|++++|..+..+|. .+..+++|+ .|++++|.++.++
T Consensus 100 ~f~~l~~L~~L~l~~-n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~ 172 (239)
T 2xwt_C 100 ALKELPLLKFLGIFN-TGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQ 172 (239)
T ss_dssp SEECCTTCCEEEEEE-ECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEEC
T ss_pred HhCCCCCCCEEeCCC-CCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccC
Confidence 688999999999999 67888998 88888888 999999758888875 488899999 9999999887654
No 76
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.20 E-value=6.8e-11 Score=108.21 Aligned_cols=123 Identities=22% Similarity=0.306 Sum_probs=85.6
Q ss_pred CCCcEEeccCCCCCccCC--------CcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc
Q 015983 2 KSLKTLVLSGCLKLKKFP--------DIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA 73 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP--------~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~ 73 (397)
++|+.|+|++| .++.+| .+..|+|++|.|+.+++ ..+..+++|++|+|++|.|+.+|.
T Consensus 32 ~~l~~L~l~~n-~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~-------------~~~~~l~~L~~L~Ls~N~l~~l~~ 97 (220)
T 2v9t_B 32 ETITEIRLEQN-TIKVIPPGAFSPYKKLRRIDLSNNQISELAP-------------DAFQGLRSLNSLVLYGNKITELPK 97 (220)
T ss_dssp TTCCEEECCSS-CCCEECTTSSTTCTTCCEEECCSSCCCEECT-------------TTTTTCSSCCEEECCSSCCCCCCT
T ss_pred cCCCEEECCCC-cCCCcCHhHhhCCCCCCEEECCCCcCCCcCH-------------HHhhCCcCCCEEECCCCcCCccCH
Confidence 36788888887 343333 33347888887776532 234667778888888888888876
Q ss_pred c-ccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCccc
Q 015983 74 S-IELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFA 140 (397)
Q Consensus 74 s-i~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~ 140 (397)
. +..+++|+.|+|++ +.+..+ |..+..+++|++|+|++| .+..+|. .+..+++|+.|++++|++.
T Consensus 98 ~~f~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 98 SLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDN-KLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred hHccCCCCCCEEECCC-CCCCEeCHHHcCCCCCCCEEECCCC-cCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 5 57788888888887 566666 456777888888888884 5666553 4777788888888887653
No 77
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.20 E-value=8.7e-11 Score=119.00 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=62.3
Q ss_pred CCCCcEEeccCCCC-------CccCCCcceEEeecCCccccchh-hhhhhccc----------cccCccCCCCCCCCEEE
Q 015983 1 MKSLKTLVLSGCLK-------LKKFPDIVQVLWDGTDIRELSFA-IELLFRLV----------QEFPEKTSSKDQLLEIH 62 (397)
Q Consensus 1 L~sL~~L~LsgC~~-------L~~lP~~~~L~Ls~n~l~~Lp~s-i~~L~~L~----------~~~P~~l~~l~~L~~L~ 62 (397)
+++|++|+|++|.. +..++.+..|+|++|.++.+|.. +..+++|+ ...|..+..+++|++|+
T Consensus 55 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 134 (477)
T 2id5_A 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLE 134 (477)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEE
Confidence 45677777777632 12233444477777777777654 34555544 22344556666666666
Q ss_pred eeCCCCCcCC-ccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeec
Q 015983 63 LEGTAIRGLP-ASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSG 112 (397)
Q Consensus 63 Ls~~~i~~lP-~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~ 112 (397)
|++|.++.++ ..+..+++|+.|+|++ +.+..+|. .+..+++|+.|++++
T Consensus 135 l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~ 185 (477)
T 2id5_A 135 VGDNDLVYISHRAFSGLNSLEQLTLEK-CNLTSIPTEALSHLHGLIVLRLRH 185 (477)
T ss_dssp ECCTTCCEECTTSSTTCTTCCEEEEES-CCCSSCCHHHHTTCTTCCEEEEES
T ss_pred CCCCccceeChhhccCCCCCCEEECCC-CcCcccChhHhcccCCCcEEeCCC
Confidence 6666666443 3456666666666665 34555543 344455555555554
No 78
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.20 E-value=5.2e-11 Score=124.46 Aligned_cols=104 Identities=17% Similarity=0.202 Sum_probs=90.1
Q ss_pred ceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccC
Q 015983 22 VQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTING 101 (397)
Q Consensus 22 ~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~ 101 (397)
..|+|++|.|+.+|. + +.|++|+.|+|++|.|+.+|..++.+++|+.|+|++ |.+..+| .++.
T Consensus 444 ~~L~Ls~n~l~~lp~-~--------------~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~ 506 (567)
T 1dce_A 444 RVLHLAHKDLTVLCH-L--------------EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASD-NALENVD-GVAN 506 (567)
T ss_dssp SEEECTTSCCSSCCC-G--------------GGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTT
T ss_pred eEEEecCCCCCCCcC-c--------------cccccCcEeecCcccccccchhhhcCCCCCEEECCC-CCCCCCc-ccCC
Confidence 348888888887764 4 456789999999999999999999999999999999 6888899 7999
Q ss_pred CCcCceeeeecccCCccC--CcccCCCCCCcEEECCCCcccccc
Q 015983 102 LRCLRMLHLSGCSKLKNA--PETLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 102 L~sL~~L~Ls~C~~L~~l--P~~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
+++|++|+|++| .+..+ |..++.+++|+.|++++|.++.++
T Consensus 507 l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~ 549 (567)
T 1dce_A 507 LPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEE 549 (567)
T ss_dssp CSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSS
T ss_pred CCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCc
Confidence 999999999995 67776 888999999999999999987754
No 79
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.19 E-value=1.6e-11 Score=115.55 Aligned_cols=125 Identities=19% Similarity=0.245 Sum_probs=96.1
Q ss_pred CcEEeccCCCCCccC------CCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccC
Q 015983 4 LKTLVLSGCLKLKKF------PDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIEL 77 (397)
Q Consensus 4 L~~L~LsgC~~L~~l------P~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~ 77 (397)
|..|+|+++ .++.+ +.+..|++++|.++.+| .+ ..+++|++|+|++|.|+.+|. +..
T Consensus 21 l~~l~l~~~-~i~~~~~~~~l~~L~~L~l~~n~i~~l~-~l--------------~~l~~L~~L~L~~N~i~~~~~-l~~ 83 (263)
T 1xeu_A 21 AVKQNLGKQ-SVTDLVSQKELSGVQNFNGDNSNIQSLA-GM--------------QFFTNLKELHLSHNQISDLSP-LKD 83 (263)
T ss_dssp HHHHHHTCS-CTTSEECHHHHTTCSEEECTTSCCCCCT-TG--------------GGCTTCCEEECCSSCCCCCGG-GTT
T ss_pred HHHHHhcCC-CcccccchhhcCcCcEEECcCCCcccch-HH--------------hhCCCCCEEECCCCccCCChh-hcc
Confidence 344555554 33333 34444788888777765 32 567889999999999999988 999
Q ss_pred CCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccccCCC
Q 015983 78 LSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIAQKDS 150 (397)
Q Consensus 78 L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~~l~~ 150 (397)
+++|+.|+|++ +.+..+|.... ++|++|++++| .+..+| .+..+++|+.|++++|.++.++.+..++.
T Consensus 84 l~~L~~L~L~~-N~l~~l~~~~~--~~L~~L~L~~N-~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~l~~l~~ 151 (263)
T 1xeu_A 84 LTKLEELSVNR-NRLKNLNGIPS--ACLSRLFLDNN-ELRDTD-SLIHLKNLEILSIRNNKLKSIVMLGFLSK 151 (263)
T ss_dssp CSSCCEEECCS-SCCSCCTTCCC--SSCCEEECCSS-CCSBSG-GGTTCTTCCEEECTTSCCCBCGGGGGCTT
T ss_pred CCCCCEEECCC-CccCCcCcccc--CcccEEEccCC-ccCCCh-hhcCcccccEEECCCCcCCCChHHccCCC
Confidence 99999999999 68888887443 89999999995 777776 47889999999999999988766554443
No 80
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.19 E-value=1e-10 Score=113.02 Aligned_cols=133 Identities=20% Similarity=0.285 Sum_probs=67.3
Q ss_pred CCcEEeccCCCCCccCCCcc-----eEEeecCCccccch-hhhhhhccc----------cccCccCCCCCCCCEEEeeCC
Q 015983 3 SLKTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSF-AIELLFRLV----------QEFPEKTSSKDQLLEIHLEGT 66 (397)
Q Consensus 3 sL~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~~ 66 (397)
+|+.++++++ .++.+|... .|+|++|.++.+++ .+..+++|+ ...|..++.+++|++|+|++|
T Consensus 34 ~l~~l~~~~~-~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 34 HLRVVQCSDL-GLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp ETTEEECCSS-CCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred cCCEEECCCC-CccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 4788888887 566777533 38888888887754 444443333 122344444555555555555
Q ss_pred CCCcCCccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCC--ccCCcccCCCCCCcEEECCCCccc
Q 015983 67 AIRGLPASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKL--KNAPETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 67 ~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L--~~lP~~~~~L~~L~~L~ls~n~~~ 140 (397)
.++.+|..+. ++|+.|++++ +.+..+|. .+.++++|++|++++|..- ...|..+..+ +|+.|++++|.++
T Consensus 113 ~l~~l~~~~~--~~L~~L~l~~-n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 113 HLVEIPPNLP--SSLVELRIHD-NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp CCCSCCSSCC--TTCCEEECCS-SCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred cCCccCcccc--ccCCEEECCC-CccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 5555544433 4455555554 34444433 2444555555555543211 1223333333 4444444444443
No 81
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.19 E-value=9.1e-11 Score=117.78 Aligned_cols=85 Identities=16% Similarity=0.174 Sum_probs=71.6
Q ss_pred CCCCEEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccC-CcccCCCCCCcEE
Q 015983 56 DQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNA-PETLGKVESLESA 132 (397)
Q Consensus 56 ~~L~~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~~L 132 (397)
++|++|+|++|.++.+ |..++.+++|+.|+|++ +.+..+ |..+.++++|++|+|++| .+..+ |..++.+++|+.|
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L 352 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ-NEINKIDDNAFWGLTHLLKLNLSQN-FLGSIDSRMFENLDKLEVL 352 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECCSS-CCCEECGGGGTTCTTCCEE
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCC-CcccccChhHhcCcccCCEEECCCC-ccCCcChhHhcCcccCCEE
Confidence 5788999999988854 66789999999999999 466665 668999999999999996 45555 6778999999999
Q ss_pred ECCCCccccc
Q 015983 133 VETVTKFAKA 142 (397)
Q Consensus 133 ~ls~n~~~~L 142 (397)
++++|.++.+
T Consensus 353 ~Ls~N~l~~~ 362 (455)
T 3v47_A 353 DLSYNHIRAL 362 (455)
T ss_dssp ECCSSCCCEE
T ss_pred ECCCCccccc
Confidence 9999988764
No 82
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.19 E-value=5.1e-11 Score=122.84 Aligned_cols=142 Identities=20% Similarity=0.145 Sum_probs=114.4
Q ss_pred CCCCcEEeccCCCCC---------ccCCCcceEEeecCCccccchhhhhhhccc----------cccC-ccCCCCCCCCE
Q 015983 1 MKSLKTLVLSGCLKL---------KKFPDIVQVLWDGTDIRELSFAIELLFRLV----------QEFP-EKTSSKDQLLE 60 (397)
Q Consensus 1 L~sL~~L~LsgC~~L---------~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~----------~~~P-~~l~~l~~L~~ 60 (397)
+++|+.|+|++|... ..+|.+..|++++|.+..+|..+..+++|+ ...| ..+..+++|++
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 425 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIY 425 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCE
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCE
Confidence 478999999998422 234566669999999999887777777665 2223 46788999999
Q ss_pred EEeeCCCCCc-CCccccCCCCCCEEEecCCCCCC--CCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCC
Q 015983 61 IHLEGTAIRG-LPASIELLSGNVLLNLKDRKNLK--SLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVT 137 (397)
Q Consensus 61 L~Ls~~~i~~-lP~si~~L~~L~~L~Ls~c~~l~--~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n 137 (397)
|+|++|.++. .|..+..+++|+.|+|++| .+. .+|..+..+++|++|++++|......|..+..+++|+.|++++|
T Consensus 426 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 504 (570)
T 2z63_A 426 LDISHTHTRVAFNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504 (570)
T ss_dssp EECTTSCCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeCcCCcccccchhhhhcCCcCcEEECcCC-cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCC
Confidence 9999999985 5667899999999999995 454 68989999999999999997554445888999999999999999
Q ss_pred cccccc
Q 015983 138 KFAKAE 143 (397)
Q Consensus 138 ~~~~L~ 143 (397)
.++.++
T Consensus 505 ~l~~~~ 510 (570)
T 2z63_A 505 QLKSVP 510 (570)
T ss_dssp CCSCCC
T ss_pred cCCCCC
Confidence 887653
No 83
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.17 E-value=1.4e-10 Score=117.45 Aligned_cols=137 Identities=14% Similarity=0.132 Sum_probs=67.6
Q ss_pred CCCCcEEeccCCCC-------CccCCCcceEEeecCCccccchh-hhhhhccc----------cccCccCCCCCCCCEEE
Q 015983 1 MKSLKTLVLSGCLK-------LKKFPDIVQVLWDGTDIRELSFA-IELLFRLV----------QEFPEKTSSKDQLLEIH 62 (397)
Q Consensus 1 L~sL~~L~LsgC~~-------L~~lP~~~~L~Ls~n~l~~Lp~s-i~~L~~L~----------~~~P~~l~~l~~L~~L~ 62 (397)
+++|+.|+|++|.. +..++.+..|+|++|.++.+|.. +..+++|. ...+..+..+++|++|+
T Consensus 127 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 206 (477)
T 2id5_A 127 LYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLE 206 (477)
T ss_dssp CTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEE
T ss_pred cccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceee
Confidence 46788888888742 23344455588888888877653 45555544 12223445555555555
Q ss_pred eeCCC-CCcCCccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCcc
Q 015983 63 LEGTA-IRGLPASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKF 139 (397)
Q Consensus 63 Ls~~~-i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~ 139 (397)
|++|. +..+|..+....+|+.|+|++ +.+..+|. .+..+++|+.|+|++| .+..++ ..+..+++|+.|++++|.+
T Consensus 207 l~~~~~~~~~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~n~l 284 (477)
T 2id5_A 207 ISHWPYLDTMTPNCLYGLNLTSLSITH-CNLTAVPYLAVRHLVYLRFLNLSYN-PISTIEGSMLHELLRLQEIQLVGGQL 284 (477)
T ss_dssp EECCTTCCEECTTTTTTCCCSEEEEES-SCCCSCCHHHHTTCTTCCEEECCSS-CCCEECTTSCTTCTTCCEEECCSSCC
T ss_pred CCCCccccccCcccccCccccEEECcC-CcccccCHHHhcCccccCeeECCCC-cCCccChhhccccccCCEEECCCCcc
Confidence 55542 224444433333444444444 23444442 3444444444444443 222222 2334444444444444443
No 84
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.17 E-value=5.1e-11 Score=122.02 Aligned_cols=139 Identities=15% Similarity=0.067 Sum_probs=89.2
Q ss_pred CCCCcEEeccCCCCCccCC---CcceEEeecCCccccchh-hhhhhccc-------cccCccCCCCCCCCEEEeeCCCCC
Q 015983 1 MKSLKTLVLSGCLKLKKFP---DIVQVLWDGTDIRELSFA-IELLFRLV-------QEFPEKTSSKDQLLEIHLEGTAIR 69 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP---~~~~L~Ls~n~l~~Lp~s-i~~L~~L~-------~~~P~~l~~l~~L~~L~Ls~~~i~ 69 (397)
+++|++|+|++| .++.+| .+..|++++|.++.++.. +.+|+.|. ...|..++.+++|++|+|++|.++
T Consensus 79 l~~L~~L~Ls~N-~l~~l~~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~ 157 (487)
T 3oja_A 79 LSTLRTLDLNNN-YVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157 (487)
T ss_dssp CTTCCEEECCSS-EEEEEEECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC
T ss_pred CCCCCEEEecCC-cCCCCCCCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC
Confidence 467888888887 344443 344477777777765543 22333332 333555666777777888777777
Q ss_pred c-CCcccc-CCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983 70 G-LPASIE-LLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 70 ~-lP~si~-~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
. .|..+. .+++|+.|+|++ +.+..+|. ...+++|++|+|++ +.+..+|..+..+++|+.|++++|.++.++
T Consensus 158 ~~~~~~l~~~l~~L~~L~Ls~-N~l~~~~~-~~~l~~L~~L~Ls~-N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp 230 (487)
T 3oja_A 158 TVNFAELAASSDTLEHLNLQY-NFIYDVKG-QVVFAKLKTLDLSS-NKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230 (487)
T ss_dssp EEEGGGGGGGTTTCCEEECTT-SCCCEEEC-CCCCTTCCEEECCS-SCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred CcChHHHhhhCCcccEEecCC-Cccccccc-cccCCCCCEEECCC-CCCCCCCHhHcCCCCccEEEecCCcCcccc
Confidence 5 344554 677777777777 46666655 33577777777777 356667666777777777777777766543
No 85
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.17 E-value=7e-11 Score=120.90 Aligned_cols=139 Identities=13% Similarity=0.101 Sum_probs=105.6
Q ss_pred CCCCcEEeccCCCCCccCCC-----------cceEEeecCCccccc--hhhhhhhccc-------cccCccCCCCCCCCE
Q 015983 1 MKSLKTLVLSGCLKLKKFPD-----------IVQVLWDGTDIRELS--FAIELLFRLV-------QEFPEKTSSKDQLLE 60 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP~-----------~~~L~Ls~n~l~~Lp--~si~~L~~L~-------~~~P~~l~~l~~L~~ 60 (397)
|++|+.|++++|.. .+|. +..|++++|.+..++ ..+..|+.|. +.+|..++.+++|++
T Consensus 275 l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 352 (520)
T 2z7x_B 275 LKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELET 352 (520)
T ss_dssp CCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCE
T ss_pred CceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCE
Confidence 45788889998854 7773 445999999888665 3334444443 446788889999999
Q ss_pred EEeeCCCCCc---CCccccCCCCCCEEEecCCCCCCC-CChh-ccCCCcCceeeeecccCCccCCcccCCCCCCcEEECC
Q 015983 61 IHLEGTAIRG---LPASIELLSGNVLLNLKDRKNLKS-LPST-INGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVET 135 (397)
Q Consensus 61 L~Ls~~~i~~---lP~si~~L~~L~~L~Ls~c~~l~~-LP~~-i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls 135 (397)
|+|++|.++. +|..++.+++|+.|+|++ +.+.. +|.. +..+++|++|++++|.....+|..+. ++|+.|+++
T Consensus 353 L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~-N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls 429 (520)
T 2z7x_B 353 LILQMNQLKELSKIAEMTTQMKSLQQLDISQ-NSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH 429 (520)
T ss_dssp EECCSSCCCBHHHHHHHHTTCTTCCEEECCS-SCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC
T ss_pred EEccCCccCccccchHHHhhCCCCCEEECCC-CcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECC
Confidence 9999999985 456788999999999998 56666 8864 77889999999999765566666543 689999999
Q ss_pred CCccccccc
Q 015983 136 VTKFAKAEL 144 (397)
Q Consensus 136 ~n~~~~L~~ 144 (397)
+|.++.++.
T Consensus 430 ~N~l~~ip~ 438 (520)
T 2z7x_B 430 SNKIKSIPK 438 (520)
T ss_dssp SSCCCCCCG
T ss_pred CCcccccch
Confidence 998876553
No 86
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.17 E-value=1.4e-10 Score=122.58 Aligned_cols=134 Identities=17% Similarity=0.158 Sum_probs=76.5
Q ss_pred EEeccCCCCCccCCCcc-----eEEeecCCccccch-hhhhhhccc----------cccCccCCCCCCCCEEEeeCCCCC
Q 015983 6 TLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSF-AIELLFRLV----------QEFPEKTSSKDQLLEIHLEGTAIR 69 (397)
Q Consensus 6 ~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~-si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls~~~i~ 69 (397)
.++.+++ .++.+|... .|+|++|.++.+|. .+.++++|+ ...|..++.+++|++|+|++|.++
T Consensus 8 ~~~cs~~-~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 86 (680)
T 1ziw_A 8 VADCSHL-KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86 (680)
T ss_dssp EEECCSS-CCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC
T ss_pred eeECCCC-CccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC
Confidence 4555554 455555322 26666666666554 345555443 223444555666666666666666
Q ss_pred cCCc-cccCCCCCCEEEecCCCCCCCCC-hhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983 70 GLPA-SIELLSGNVLLNLKDRKNLKSLP-STINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 70 ~lP~-si~~L~~L~~L~Ls~c~~l~~LP-~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~ 141 (397)
.+|. .++.+++|+.|+|++ +.+..+| ..++++++|++|++++|......|..++.+++|+.|++++|.++.
T Consensus 87 ~l~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 87 QLSDKTFAFCTNLTELHLMS-NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CCCTTTTTTCTTCSEEECCS-SCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred ccChhhhccCCCCCEEECCC-CccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 6665 366666666666666 3455554 456666666666666654333344555666666666666665543
No 87
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.16 E-value=1.6e-10 Score=119.86 Aligned_cols=139 Identities=12% Similarity=0.118 Sum_probs=106.7
Q ss_pred CCcEEeccCCCCC-----ccCCCcceEEeecCCccc-cchhhhhhhccc---------c---ccCccCCCCCCCCEEEee
Q 015983 3 SLKTLVLSGCLKL-----KKFPDIVQVLWDGTDIRE-LSFAIELLFRLV---------Q---EFPEKTSSKDQLLEIHLE 64 (397)
Q Consensus 3 sL~~L~LsgC~~L-----~~lP~~~~L~Ls~n~l~~-Lp~si~~L~~L~---------~---~~P~~l~~l~~L~~L~Ls 64 (397)
+|+.|++++|... ..++.+..|++++|.++. +|..+..+++|+ . .+|..+..+++|++|+|+
T Consensus 332 ~L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~ 411 (562)
T 3a79_B 332 NIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVS 411 (562)
T ss_dssp CCSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECT
T ss_pred cceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECC
Confidence 5888888887432 334455558888888886 566777666665 2 334567889999999999
Q ss_pred CCCCCc-CCcc-ccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccc
Q 015983 65 GTAIRG-LPAS-IELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKA 142 (397)
Q Consensus 65 ~~~i~~-lP~s-i~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L 142 (397)
+|.++. +|.. +..+++|+.|++++|.--..+|..+. ++|++|++++| .+..+|..+..+++|+.|++++|.++.+
T Consensus 412 ~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~l~~l 488 (562)
T 3a79_B 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQLKSV 488 (562)
T ss_dssp TSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred CCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCCCCCC
Confidence 999997 8865 78899999999999543344555432 68999999995 7889998888999999999999988876
Q ss_pred cc
Q 015983 143 EL 144 (397)
Q Consensus 143 ~~ 144 (397)
+.
T Consensus 489 ~~ 490 (562)
T 3a79_B 489 PD 490 (562)
T ss_dssp CT
T ss_pred CH
Confidence 54
No 88
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.16 E-value=7e-11 Score=121.80 Aligned_cols=142 Identities=15% Similarity=0.165 Sum_probs=116.1
Q ss_pred CCCCcEEeccCCCCCc-----cCCCcceEEeecCCcccc---chhhhhhhccc---------cccCccCCCCCCCCEEEe
Q 015983 1 MKSLKTLVLSGCLKLK-----KFPDIVQVLWDGTDIREL---SFAIELLFRLV---------QEFPEKTSSKDQLLEIHL 63 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~-----~lP~~~~L~Ls~n~l~~L---p~si~~L~~L~---------~~~P~~l~~l~~L~~L~L 63 (397)
+++|+.|++++|.... .+|.+..|++++|.++.+ |..+..+++|+ ..+|..+..+++|++|++
T Consensus 324 l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l 403 (570)
T 2z63_A 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403 (570)
T ss_dssp CSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred ccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEc
Confidence 4689999999986543 455666699999999866 67777777765 345555788999999999
Q ss_pred eCCCCCcCCc--cccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCC-ccCCcccCCCCCCcEEECCCCccc
Q 015983 64 EGTAIRGLPA--SIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKL-KNAPETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 64 s~~~i~~lP~--si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L-~~lP~~~~~L~~L~~L~ls~n~~~ 140 (397)
++|.++.++. .+..+++|+.|++++|......|..+.++++|++|++++|... ..+|..+..+++|+.|++++|.++
T Consensus 404 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~ 483 (570)
T 2z63_A 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483 (570)
T ss_dssp TTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC
T ss_pred cCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccc
Confidence 9999987654 6889999999999996544556778899999999999997544 468999999999999999999887
Q ss_pred cc
Q 015983 141 KA 142 (397)
Q Consensus 141 ~L 142 (397)
.+
T Consensus 484 ~~ 485 (570)
T 2z63_A 484 QL 485 (570)
T ss_dssp EE
T ss_pred cC
Confidence 64
No 89
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.16 E-value=4e-10 Score=101.51 Aligned_cols=123 Identities=23% Similarity=0.345 Sum_probs=99.9
Q ss_pred CCCcEEeccCCCCCccCC--------CcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc
Q 015983 2 KSLKTLVLSGCLKLKKFP--------DIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA 73 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP--------~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~ 73 (397)
++|+.|+|++| .++.+| .+..|+|++|.++.+|... +..+++|++|+|++|.++.+|.
T Consensus 28 ~~l~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------~~~l~~L~~L~Ls~n~l~~~~~ 93 (208)
T 2o6s_A 28 AQTTYLDLETN-SLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV-------------FNKLTSLTYLNLSTNQLQSLPN 93 (208)
T ss_dssp TTCSEEECCSS-CCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT-------------TTTCTTCCEEECCSSCCCCCCT
T ss_pred CCCcEEEcCCC-ccCcCChhhhcccccCcEEECCCCccCccChhh-------------cCCCCCcCEEECCCCcCCccCH
Confidence 47999999998 344444 3444999999998877542 3678899999999999998886
Q ss_pred c-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCccc
Q 015983 74 S-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFA 140 (397)
Q Consensus 74 s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~ 140 (397)
. +..+++|+.|+|++ +.+..+|. .+..+++|++|++++| .+..+|. .+..+++|+.|++++|.+.
T Consensus 94 ~~~~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~~~ 161 (208)
T 2o6s_A 94 GVFDKLTQLKELALNT-NQLQSLPDGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDNPWD 161 (208)
T ss_dssp TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred hHhcCccCCCEEEcCC-CcCcccCHhHhccCCcCCEEECCCC-ccceeCHHHhccCCCccEEEecCCCee
Confidence 5 68999999999998 67888876 4788999999999995 6667765 4788999999999999754
No 90
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.15 E-value=8e-11 Score=115.66 Aligned_cols=136 Identities=21% Similarity=0.171 Sum_probs=105.9
Q ss_pred CCCcEEeccCCCCCcc---------CCCcceEEeecCCccccch-hhhhhhccc---------ccc-CccCCCCCCCCEE
Q 015983 2 KSLKTLVLSGCLKLKK---------FPDIVQVLWDGTDIRELSF-AIELLFRLV---------QEF-PEKTSSKDQLLEI 61 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~---------lP~~~~L~Ls~n~l~~Lp~-si~~L~~L~---------~~~-P~~l~~l~~L~~L 61 (397)
..|+.|+|++|. ++. ++.+..|+|++|.|+.++. .+..+++|+ ..+ +..+..+++|++|
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 117 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVL 117 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEE
Confidence 358899999983 443 3444459999999998875 467777665 333 4467899999999
Q ss_pred EeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCCChhc----cCCCcCceeeeecccCCccCCc-ccCCCCC--CcEEE
Q 015983 62 HLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSLPSTI----NGLRCLRMLHLSGCSKLKNAPE-TLGKVES--LESAV 133 (397)
Q Consensus 62 ~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~LP~~i----~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~--L~~L~ 133 (397)
+|++|.|+.+ |..+..+++|+.|+|++ +.+..+|..+ ..+++|+.|+|++ +.+..+|. .+..++. |+.|+
T Consensus 118 ~L~~N~i~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~~~~l~~L~~L~L~~-N~l~~l~~~~~~~l~~~~l~~l~ 195 (361)
T 2xot_A 118 LLYNNHIVVVDRNAFEDMAQLQKLYLSQ-NQISRFPVELIKDGNKLPKLMLLDLSS-NKLKKLPLTDLQKLPAWVKNGLY 195 (361)
T ss_dssp ECCSSCCCEECTTTTTTCTTCCEEECCS-SCCCSCCGGGTC----CTTCCEEECCS-SCCCCCCHHHHHHSCHHHHTTEE
T ss_pred ECCCCcccEECHHHhCCcccCCEEECCC-CcCCeeCHHHhcCcccCCcCCEEECCC-CCCCccCHHHhhhccHhhcceEE
Confidence 9999999987 56799999999999999 7899998765 5799999999999 57888873 4555655 47789
Q ss_pred CCCCccc
Q 015983 134 ETVTKFA 140 (397)
Q Consensus 134 ls~n~~~ 140 (397)
+++|++.
T Consensus 196 l~~N~~~ 202 (361)
T 2xot_A 196 LHNNPLE 202 (361)
T ss_dssp CCSSCEE
T ss_pred ecCCCcc
Confidence 9998764
No 91
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.15 E-value=1.1e-10 Score=122.36 Aligned_cols=125 Identities=18% Similarity=0.239 Sum_probs=63.0
Q ss_pred CCCcEEeccCCCCCccCCC--------cceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc
Q 015983 2 KSLKTLVLSGCLKLKKFPD--------IVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA 73 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP~--------~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~ 73 (397)
.+|+.|++++| .++.+|. +..|+|++|.++.+++ ..++.+++|++|+|++|.|+.+|.
T Consensus 51 ~~l~~l~l~~~-~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-------------~~~~~l~~L~~L~L~~n~l~~~~~ 116 (597)
T 3oja_B 51 NNQKIVTFKNS-TMRKLPAALLDSFRQVELLNLNDLQIEEIDT-------------YAFAYAHTIQKLYMGFNAIRYLPP 116 (597)
T ss_dssp CCCSEEEESSC-EESEECTHHHHHCCCCSEEECTTSCCCEECT-------------TTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCceEEEeeCC-CCCCcCHHHHccCCCCcEEECCCCCCCCCCh-------------HHhcCCCCCCEEECCCCcCCCCCH
Confidence 45666666665 3444432 3336666666665543 233445555555555555554443
Q ss_pred c-ccCCCCCCEEEecCCCCCCCCChh-ccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983 74 S-IELLSGNVLLNLKDRKNLKSLPST-INGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 74 s-i~~L~~L~~L~Ls~c~~l~~LP~~-i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~ 141 (397)
. ++.+++|+.|+|++ +.+..+|.. ++++++|++|+|++|......|..++.+++|+.|++++|.++.
T Consensus 117 ~~~~~l~~L~~L~L~~-n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 117 HVFQNVPLLTVLVLER-NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred HHHcCCCCCCEEEeeC-CCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence 2 35555555555555 344455443 3455555555555542222223345555555555555555443
No 92
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.15 E-value=1.4e-10 Score=106.03 Aligned_cols=122 Identities=16% Similarity=0.255 Sum_probs=84.7
Q ss_pred CCcEEeccCCCCCccC---------CCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc
Q 015983 3 SLKTLVLSGCLKLKKF---------PDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA 73 (397)
Q Consensus 3 sL~~L~LsgC~~L~~l---------P~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~ 73 (397)
.++.|+|++|. ++.+ +.+..|+|++|.|+.++.. .+..+++|++|+|++|.|+.+|.
T Consensus 33 ~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~-------------~~~~l~~L~~L~Ls~N~l~~~~~ 98 (220)
T 2v70_A 33 YTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEG-------------AFEGASGVNEILLTSNRLENVQH 98 (220)
T ss_dssp TCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTT-------------TTTTCTTCCEEECCSSCCCCCCG
T ss_pred CCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHH-------------HhCCCCCCCEEECCCCccCccCH
Confidence 46778888873 3333 2333378888877776542 23567778888888888887765
Q ss_pred c-ccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccC-CcccCCCCCCcEEECCCCccc
Q 015983 74 S-IELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNA-PETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 74 s-i~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~l-P~~~~~L~~L~~L~ls~n~~~ 140 (397)
. +..+++|+.|+|++ +.+..+ |..+.++++|++|+|++| .+..+ |..+..+++|+.|++++|.+.
T Consensus 99 ~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 99 KMFKGLESLKTLMLRS-NRITCVGNDSFIGLSSVRLLSLYDN-QITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp GGGTTCSSCCEEECTT-SCCCCBCTTSSTTCTTCSEEECTTS-CCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred hHhcCCcCCCEEECCC-CcCCeECHhHcCCCccCCEEECCCC-cCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 4 77788888888887 566665 566777888888888874 45554 667777888888888877654
No 93
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.14 E-value=2.2e-10 Score=119.34 Aligned_cols=137 Identities=20% Similarity=0.209 Sum_probs=84.0
Q ss_pred CCcEEeccCCCCCcc--------CCCcceEEeecCCccccchhhhhhhccc----------cccCccCCCCCCCCEEEee
Q 015983 3 SLKTLVLSGCLKLKK--------FPDIVQVLWDGTDIRELSFAIELLFRLV----------QEFPEKTSSKDQLLEIHLE 64 (397)
Q Consensus 3 sL~~L~LsgC~~L~~--------lP~~~~L~Ls~n~l~~Lp~si~~L~~L~----------~~~P~~l~~l~~L~~L~Ls 64 (397)
+|+.|+|++|. +.. ++.+..|++++|.++.+|..+..+++|+ ...|..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHY-FFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCC-CSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCc-cCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 46677777763 222 2333347777777777777666555554 2234456666777777777
Q ss_pred CCCCC-cCCcc-ccCCCCCCEEEecCCCCCCCC---ChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcc
Q 015983 65 GTAIR-GLPAS-IELLSGNVLLNLKDRKNLKSL---PSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKF 139 (397)
Q Consensus 65 ~~~i~-~lP~s-i~~L~~L~~L~Ls~c~~l~~L---P~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~ 139 (397)
+|.+. .+|.. +..+++|+.|++++ +.+..+ |..+..+++|++|++++|......|..+..+++|+.|++++|.+
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSH-DDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCS-SCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCCcccccchhhhhccCcCCEEECCC-CccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence 77665 55543 66677777777776 345444 45566677777777777543344455666667777777777665
Q ss_pred cc
Q 015983 140 AK 141 (397)
Q Consensus 140 ~~ 141 (397)
+.
T Consensus 413 ~~ 414 (606)
T 3t6q_A 413 KV 414 (606)
T ss_dssp EC
T ss_pred CC
Confidence 43
No 94
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.14 E-value=2.1e-10 Score=121.14 Aligned_cols=77 Identities=25% Similarity=0.243 Sum_probs=46.4
Q ss_pred CCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECC
Q 015983 56 DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVET 135 (397)
Q Consensus 56 ~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls 135 (397)
++|+.|++++|.|+.+|.. +++|+.|+|++ |.+..+| ..+++|+.|+|++| .+..+|. .+++|+.|+++
T Consensus 201 ~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~-N~L~~lp---~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls 269 (622)
T 3g06_A 201 SELYKLWAYNNRLTSLPAL---PSGLKELIVSG-NRLTSLP---VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVY 269 (622)
T ss_dssp TTCCEEECCSSCCSSCCCC---CTTCCEEECCS-SCCSCCC---CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECC
T ss_pred chhhEEECcCCcccccCCC---CCCCCEEEccC-CccCcCC---CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCC
Confidence 3444444444444444432 25677777776 4666666 33567777777774 5666665 45667777777
Q ss_pred CCcccccc
Q 015983 136 VTKFAKAE 143 (397)
Q Consensus 136 ~n~~~~L~ 143 (397)
+|.++.++
T Consensus 270 ~N~L~~lp 277 (622)
T 3g06_A 270 RNQLTRLP 277 (622)
T ss_dssp SSCCCSCC
T ss_pred CCCCCcCC
Confidence 77766543
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.14 E-value=2.5e-10 Score=119.29 Aligned_cols=127 Identities=23% Similarity=0.260 Sum_probs=94.0
Q ss_pred CCcEEeccCCCCCccCCC-----cceEEeecCCccccchhhhhhhccc------cccCccCCCCCCCCEEEeeCCCCCcC
Q 015983 3 SLKTLVLSGCLKLKKFPD-----IVQVLWDGTDIRELSFAIELLFRLV------QEFPEKTSSKDQLLEIHLEGTAIRGL 71 (397)
Q Consensus 3 sL~~L~LsgC~~L~~lP~-----~~~L~Ls~n~l~~Lp~si~~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~~l 71 (397)
+|+.|+|++| .++.+|. +..|+|++|.|+.+|..+.+|+.|. ..+|. +.. +|++|+|++|.|+.+
T Consensus 60 ~L~~L~Ls~n-~L~~lp~~l~~~L~~L~Ls~N~l~~ip~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~l~~l 135 (571)
T 3cvr_A 60 QFSELQLNRL-NLSSLPDNLPPQITVLEITQNALISLPELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQLTML 135 (571)
T ss_dssp TCSEEECCSS-CCSCCCSCCCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSCCSCC
T ss_pred CccEEEeCCC-CCCccCHhHcCCCCEEECcCCCCcccccccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCcCCCC
Confidence 7999999998 5777886 3349999999999993223344333 34666 443 788888888888888
Q ss_pred CccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccc
Q 015983 72 PASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAEL 144 (397)
Q Consensus 72 P~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~ 144 (397)
|. .+++|+.|+|++ |.+..+|. .+++|++|+|++| .+..+|. +. ++|+.|++++|.++.++.
T Consensus 136 p~---~l~~L~~L~Ls~-N~l~~lp~---~l~~L~~L~Ls~N-~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~ 197 (571)
T 3cvr_A 136 PE---LPALLEYINADN-NQLTMLPE---LPTSLEVLSVRNN-QLTFLPE-LP--ESLEALDVSTNLLESLPA 197 (571)
T ss_dssp CC---CCTTCCEEECCS-SCCSCCCC---CCTTCCEEECCSS-CCSCCCC-CC--TTCCEEECCSSCCSSCCC
T ss_pred CC---cCccccEEeCCC-CccCcCCC---cCCCcCEEECCCC-CCCCcch-hh--CCCCEEECcCCCCCchhh
Confidence 77 577888888887 57777876 4678888888884 5677877 55 778888888887776554
No 96
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.13 E-value=3.5e-10 Score=114.91 Aligned_cols=130 Identities=13% Similarity=0.175 Sum_probs=96.1
Q ss_pred CCCCcEEeccCCCCCccCC-----CcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCC
Q 015983 1 MKSLKTLVLSGCLKLKKFP-----DIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGT 66 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP-----~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~ 66 (397)
+++|++|+|++| .++.+| .+..|++++|.++.+| ++.+++|+ ..+| ++.+++|++|++++|
T Consensus 63 l~~L~~L~Ls~n-~l~~~~~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N 137 (457)
T 3bz5_A 63 LTGLTKLICTSN-NITTLDLSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARN 137 (457)
T ss_dssp CTTCSEEECCSS-CCSCCCCTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTS
T ss_pred cCCCCEEEccCC-cCCeEccccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCcCCeec--CCCCCcCCEEECCCC
Confidence 468999999998 354443 4444999999998886 66666665 3344 678899999999999
Q ss_pred CCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccc
Q 015983 67 AIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKA 142 (397)
Q Consensus 67 ~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L 142 (397)
.++.+| ++.+++|+.|++++|..+..++ +..+++|++|++++| .+..+| ++.+++|+.|++++|.++.+
T Consensus 138 ~l~~l~--l~~l~~L~~L~l~~n~~~~~~~--~~~l~~L~~L~ls~n-~l~~l~--l~~l~~L~~L~l~~N~l~~~ 206 (457)
T 3bz5_A 138 TLTEID--VSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCSFN-KITELD--VSQNKLLNRLNCDTNNITKL 206 (457)
T ss_dssp CCSCCC--CTTCTTCCEEECTTCSCCCCCC--CTTCTTCCEEECCSS-CCCCCC--CTTCTTCCEEECCSSCCSCC
T ss_pred ccceec--cccCCcCCEEECCCCCcccccc--cccCCcCCEEECCCC-ccceec--cccCCCCCEEECcCCcCCee
Confidence 998875 7788888888888866676663 667788888888874 566666 56677777777777766554
No 97
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.13 E-value=5.3e-11 Score=122.38 Aligned_cols=134 Identities=14% Similarity=0.162 Sum_probs=71.8
Q ss_pred CCcEEeccCCCCCcc--------CCCcceEEeecCCccccc-hhhhhhhccc---------ccc-CccCCCCCCCCEEEe
Q 015983 3 SLKTLVLSGCLKLKK--------FPDIVQVLWDGTDIRELS-FAIELLFRLV---------QEF-PEKTSSKDQLLEIHL 63 (397)
Q Consensus 3 sL~~L~LsgC~~L~~--------lP~~~~L~Ls~n~l~~Lp-~si~~L~~L~---------~~~-P~~l~~l~~L~~L~L 63 (397)
+|++|+|++|. ++. ++.+..|+|++|.++.++ ..+..+++|+ ..+ |..++.+++|++|+|
T Consensus 27 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 27 AMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 56777777763 222 223333777777776655 3455554443 222 223556666666666
Q ss_pred eCCCCCc--CCccccCCCCCCEEEecCCCCCCCCC-hhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCC
Q 015983 64 EGTAIRG--LPASIELLSGNVLLNLKDRKNLKSLP-STINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVT 137 (397)
Q Consensus 64 s~~~i~~--lP~si~~L~~L~~L~Ls~c~~l~~LP-~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n 137 (397)
++|.++. +|..++.+++|+.|++++|..+..+| ..+.++++|++|++++|.....+|..++.+++|+.|+++.|
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccC
Confidence 6666653 34556666666666666644455554 34556666666666664433334555555444444444443
No 98
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.13 E-value=4.1e-10 Score=114.11 Aligned_cols=142 Identities=15% Similarity=0.268 Sum_probs=104.2
Q ss_pred CCCCcEEeccCCCCC-----ccCCCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCC
Q 015983 1 MKSLKTLVLSGCLKL-----KKFPDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGT 66 (397)
Q Consensus 1 L~sL~~L~LsgC~~L-----~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~ 66 (397)
+++|+.|+|++|... ..++.+..|++++|.++.++ .+..+++|+ ..++. +..+++|++|+|++|
T Consensus 198 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n 275 (466)
T 1o6v_A 198 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSGLTKLTELKLGAN 275 (466)
T ss_dssp CTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSS
T ss_pred CCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhcCCCCCEEECCCC
Confidence 468899999988432 22344555899998888775 355555554 22333 677888999999999
Q ss_pred CCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccccc
Q 015983 67 AIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELIA 146 (397)
Q Consensus 67 ~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l~ 146 (397)
.++.+|. +..+++|+.|++++ +.+..++. +..+++|+.|++++| .+..++. +..+++|+.|++++|.++.++.+.
T Consensus 276 ~l~~~~~-~~~l~~L~~L~L~~-n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~l~ 350 (466)
T 1o6v_A 276 QISNISP-LAGLTALTNLELNE-NQLEDISP-ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFYNNKVSDVSSLA 350 (466)
T ss_dssp CCCCCGG-GTTCTTCSEEECCS-SCCSCCGG-GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECCSSCCCCCGGGT
T ss_pred ccCcccc-ccCCCccCeEEcCC-CcccCchh-hcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECCCCccCCchhhc
Confidence 9988877 88889999999998 57777776 778889999999986 4555544 577888899999888887765554
Q ss_pred cCC
Q 015983 147 QKD 149 (397)
Q Consensus 147 ~l~ 149 (397)
.++
T Consensus 351 ~l~ 353 (466)
T 1o6v_A 351 NLT 353 (466)
T ss_dssp TCT
T ss_pred cCC
Confidence 433
No 99
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.13 E-value=1e-10 Score=122.27 Aligned_cols=82 Identities=23% Similarity=0.390 Sum_probs=65.6
Q ss_pred CCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCC
Q 015983 57 QLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETV 136 (397)
Q Consensus 57 ~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~ 136 (397)
.|+.|+|++|.|+.+|. ++.+++|+.|+|++ |.+..+|..++.+++|+.|+|++ +.+..+| .++.+++|+.|++++
T Consensus 442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSH-NRLRALPPALAALRCLEVLQASD-NALENVD-GVANLPRLQELLLCN 517 (567)
T ss_dssp TCSEEECTTSCCSSCCC-GGGGTTCCEEECCS-SCCCCCCGGGGGCTTCCEEECCS-SCCCCCG-GGTTCSSCCEEECCS
T ss_pred CceEEEecCCCCCCCcC-ccccccCcEeecCc-ccccccchhhhcCCCCCEEECCC-CCCCCCc-ccCCCCCCcEEECCC
Confidence 47788888888888886 88888888888887 57778888888888888888888 4666777 677888888888888
Q ss_pred Cccccc
Q 015983 137 TKFAKA 142 (397)
Q Consensus 137 n~~~~L 142 (397)
|.++.+
T Consensus 518 N~l~~~ 523 (567)
T 1dce_A 518 NRLQQS 523 (567)
T ss_dssp SCCCSS
T ss_pred CCCCCC
Confidence 877765
No 100
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.13 E-value=1.6e-10 Score=100.57 Aligned_cols=109 Identities=20% Similarity=0.184 Sum_probs=91.8
Q ss_pred CCcceEEeecCCcc--ccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCC-C
Q 015983 19 PDIVQVLWDGTDIR--ELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKS-L 95 (397)
Q Consensus 19 P~~~~L~Ls~n~l~--~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~-L 95 (397)
+.+..|+|++|.++ .+|..+ ..+++|++|+|++|.|+.+ ..+..+++|+.|+|++ +.+.. +
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~--------------~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~-N~l~~~~ 87 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLT--------------AEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSE-NRIFGGL 87 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCC--------------GGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEES-CCCCSCC
T ss_pred ccCCEEECCCCCCChhhHHHHH--------------HhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcC-CcCchHH
Confidence 44556999999988 666543 5667899999999999988 7899999999999999 46666 8
Q ss_pred ChhccCCCcCceeeeecccCCccCC--cccCCCCCCcEEECCCCccccccc
Q 015983 96 PSTINGLRCLRMLHLSGCSKLKNAP--ETLGKVESLESAVETVTKFAKAEL 144 (397)
Q Consensus 96 P~~i~~L~sL~~L~Ls~C~~L~~lP--~~~~~L~~L~~L~ls~n~~~~L~~ 144 (397)
|..+..+++|++|++++| .+..+| ..+..+++|+.|++++|.++.++.
T Consensus 88 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~ 137 (168)
T 2ell_A 88 DMLAEKLPNLTHLNLSGN-KLKDISTLEPLKKLECLKSLDLFNCEVTNLND 137 (168)
T ss_dssp CHHHHHCTTCCEEECBSS-SCCSSGGGGGGSSCSCCCEEECCSSGGGTSTT
T ss_pred HHHHhhCCCCCEEeccCC-ccCcchhHHHHhcCCCCCEEEeeCCcCcchHH
Confidence 888888999999999995 788876 678899999999999998877653
No 101
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.13 E-value=3.2e-10 Score=115.16 Aligned_cols=130 Identities=19% Similarity=0.237 Sum_probs=98.6
Q ss_pred CCCcEEeccCCCCCccCCC----cceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeCCCC
Q 015983 2 KSLKTLVLSGCLKLKKFPD----IVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEGTAI 68 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP~----~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~~~i 68 (397)
++|+.|+|++| .+..+|. +..|++++|.++.+| .++.+++|+ ..+|.. +.+|++|++++|.+
T Consensus 111 ~~L~~L~l~~n-~l~~l~~~~~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~---~~~L~~L~L~~n~l 185 (454)
T 1jl5_A 111 QSLKSLLVDNN-NLKALSDLPPLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDL---PPSLEFIAAGNNQL 185 (454)
T ss_dssp TTCCEEECCSS-CCSCCCSCCTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC
T ss_pred CCCcEEECCCC-ccCcccCCCCCCCEEECcCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCC---cccccEEECcCCcC
Confidence 46788888887 4555543 334999999999888 577777765 335543 35789999999999
Q ss_pred CcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983 69 RGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 69 ~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
+.+| .++.+++|+.|++++ +.+..+|... ++|++|++++| .+..+|. ++.+++|+.|++++|.++.++
T Consensus 186 ~~l~-~~~~l~~L~~L~l~~-N~l~~l~~~~---~~L~~L~l~~n-~l~~lp~-~~~l~~L~~L~l~~N~l~~l~ 253 (454)
T 1jl5_A 186 EELP-ELQNLPFLTAIYADN-NSLKKLPDLP---LSLESIVAGNN-ILEELPE-LQNLPFLTTIYADNNLLKTLP 253 (454)
T ss_dssp SSCC-CCTTCTTCCEEECCS-SCCSSCCCCC---TTCCEEECCSS-CCSSCCC-CTTCTTCCEEECCSSCCSSCC
T ss_pred CcCc-cccCCCCCCEEECCC-CcCCcCCCCc---CcccEEECcCC-cCCcccc-cCCCCCCCEEECCCCcCCccc
Confidence 8888 688899999999988 5777777643 58888888885 6668885 778888888888888877654
No 102
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.12 E-value=2.8e-10 Score=100.53 Aligned_cols=100 Identities=19% Similarity=0.276 Sum_probs=85.3
Q ss_pred EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCCChh-ccC
Q 015983 24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSLPST-ING 101 (397)
Q Consensus 24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~LP~~-i~~ 101 (397)
++++++.++.+|..+ .++|++|+|++|.|+.+ |..++.+++|+.|+|++ |.+..+|.. +.+
T Consensus 17 l~~~~n~l~~iP~~~----------------~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~-N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 17 VNCQNIRLASVPAGI----------------PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNS-NKLTAIPTGVFDK 79 (174)
T ss_dssp EECCSSCCSSCCSCC----------------CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred EEeCCCCCCccCCCc----------------CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCC-CCCCccChhHhCC
Confidence 788888888877643 25799999999999988 45789999999999999 689999875 588
Q ss_pred CCcCceeeeecccCCccCCcc-cCCCCCCcEEECCCCcccc
Q 015983 102 LRCLRMLHLSGCSKLKNAPET-LGKVESLESAVETVTKFAK 141 (397)
Q Consensus 102 L~sL~~L~Ls~C~~L~~lP~~-~~~L~~L~~L~ls~n~~~~ 141 (397)
+++|++|+|++ +.+..+|.. +..+++|+.|++++|.+.-
T Consensus 80 l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 80 LTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred cchhhEEECCC-CccceeCHHHhccccCCCEEEeCCCCccc
Confidence 99999999999 578888764 8899999999999998754
No 103
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.12 E-value=4.3e-10 Score=114.15 Aligned_cols=130 Identities=17% Similarity=0.246 Sum_probs=91.0
Q ss_pred CCcEEeccCCCCCccCCCc----ceEEeecCCccccchhhhhhhccc------cccCccCCCCCCCCEEEeeCCCCCcCC
Q 015983 3 SLKTLVLSGCLKLKKFPDI----VQVLWDGTDIRELSFAIELLFRLV------QEFPEKTSSKDQLLEIHLEGTAIRGLP 72 (397)
Q Consensus 3 sL~~L~LsgC~~L~~lP~~----~~L~Ls~n~l~~Lp~si~~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~~lP 72 (397)
+|+.|++++| .++.+|.. ..|++++|.++.+|..+.+|+.|. ..+|.. .++|++|+|++|.++.+|
T Consensus 72 ~l~~L~l~~~-~l~~lp~~~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~---~~~L~~L~L~~n~l~~lp 147 (454)
T 1jl5_A 72 QAHELELNNL-GLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL---PPLLEYLGVSNNQLEKLP 147 (454)
T ss_dssp TCSEEECTTS-CCSCCCSCCTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSC---CTTCCEEECCSSCCSSCC
T ss_pred CCCEEEecCC-ccccCCCCcCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCC---CCCCCEEECcCCCCCCCc
Confidence 4688888887 46666543 338888888888887665565554 223321 257888888888888887
Q ss_pred ccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983 73 ASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 73 ~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
.++.+++|+.|++++ +.+..+|..+ .+|++|++++| .+..+| .++.+++|+.|++++|.++.++
T Consensus 148 -~~~~l~~L~~L~l~~-N~l~~lp~~~---~~L~~L~L~~n-~l~~l~-~~~~l~~L~~L~l~~N~l~~l~ 211 (454)
T 1jl5_A 148 -ELQNSSFLKIIDVDN-NSLKKLPDLP---PSLEFIAAGNN-QLEELP-ELQNLPFLTAIYADNNSLKKLP 211 (454)
T ss_dssp -CCTTCTTCCEEECCS-SCCSCCCCCC---TTCCEEECCSS-CCSSCC-CCTTCTTCCEEECCSSCCSSCC
T ss_pred -ccCCCCCCCEEECCC-CcCcccCCCc---ccccEEECcCC-cCCcCc-cccCCCCCCEEECCCCcCCcCC
Confidence 588888888888887 4677777643 57788888874 566677 4677777778887777766544
No 104
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.11 E-value=2.8e-11 Score=124.02 Aligned_cols=137 Identities=17% Similarity=0.089 Sum_probs=104.8
Q ss_pred CCCCcEEeccCCCC-----CccCCCcceEEeecCCccccchhhhhhhccc------cccCccCCCCCCCCEEEeeCCCCC
Q 015983 1 MKSLKTLVLSGCLK-----LKKFPDIVQVLWDGTDIRELSFAIELLFRLV------QEFPEKTSSKDQLLEIHLEGTAIR 69 (397)
Q Consensus 1 L~sL~~L~LsgC~~-----L~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~ 69 (397)
|++|++|+|++|.. +..+|.+..|+|++|.|+.+|.. .+|..|. ..+|. ..+++|+.|+|++|.++
T Consensus 57 l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~~-~~L~~L~L~~N~l~~~~~--~~l~~L~~L~L~~N~l~ 133 (487)
T 3oja_A 57 FTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG-PSIETLHAANNNISRVSC--SRGQGKKNIYLANNKIT 133 (487)
T ss_dssp CTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEEEEEC-TTCCEEECCSSCCCCEEE--CCCSSCEEEECCSSCCC
T ss_pred CCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCCCCCC-CCcCEEECcCCcCCCCCc--cccCCCCEEECCCCCCC
Confidence 57899999999853 23455666699999999988754 3444443 22222 34688999999999999
Q ss_pred cC-CccccCCCCCCEEEecCCCCCCC-CChhcc-CCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983 70 GL-PASIELLSGNVLLNLKDRKNLKS-LPSTIN-GLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 70 ~l-P~si~~L~~L~~L~Ls~c~~l~~-LP~~i~-~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
.+ |..++.+++|+.|+|++ +.+.. .|..+. .+++|++|+|++| .+..+|.. ..+++|+.|++++|.++.++
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~~~-~~l~~L~~L~Ls~N~l~~~~ 207 (487)
T 3oja_A 134 MLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSNKLAFMG 207 (487)
T ss_dssp SGGGBCGGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSSCCCEEC
T ss_pred CCCchhhcCCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecCCC-cccccccc-ccCCCCCEEECCCCCCCCCC
Confidence 77 55789999999999999 56665 466665 7899999999995 57777654 45899999999999987653
No 105
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.11 E-value=4.5e-10 Score=113.81 Aligned_cols=140 Identities=15% Similarity=0.274 Sum_probs=111.5
Q ss_pred CCCCcEEeccCCCCCcc------CCCcceEEeecCCccccchhhhhhhccc---------cccCccCCCCCCCCEEEeeC
Q 015983 1 MKSLKTLVLSGCLKLKK------FPDIVQVLWDGTDIRELSFAIELLFRLV---------QEFPEKTSSKDQLLEIHLEG 65 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~------lP~~~~L~Ls~n~l~~Lp~si~~L~~L~---------~~~P~~l~~l~~L~~L~Ls~ 65 (397)
+++|+.|+|++|. +.. ++.+..|++++|.+..+++ ++.+++|+ ..++ .+..+++|+.|++++
T Consensus 176 l~~L~~L~l~~n~-l~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~ 252 (466)
T 1o6v_A 176 LTTLERLDISSNK-VSDISVLAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLAN 252 (466)
T ss_dssp CTTCCEEECCSSC-CCCCGGGGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCS
T ss_pred CCCCCEEECcCCc-CCCChhhccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCC
Confidence 5789999999984 443 4455559999999998765 55566655 2232 467789999999999
Q ss_pred CCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccccc
Q 015983 66 TAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAELI 145 (397)
Q Consensus 66 ~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~l 145 (397)
|.++.++. +..+++|+.|++++ +.+..+|. +..+++|+.|++++| .+..++. ++.+++|+.|++++|.++.+..+
T Consensus 253 n~l~~~~~-~~~l~~L~~L~l~~-n~l~~~~~-~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~~ 327 (466)
T 1o6v_A 253 NQISNLAP-LSGLTKLTELKLGA-NQISNISP-LAGLTALTNLELNEN-QLEDISP-ISNLKNLTYLTLYFNNISDISPV 327 (466)
T ss_dssp SCCCCCGG-GTTCTTCSEEECCS-SCCCCCGG-GTTCTTCSEEECCSS-CCSCCGG-GGGCTTCSEEECCSSCCSCCGGG
T ss_pred Cccccchh-hhcCCCCCEEECCC-CccCcccc-ccCCCccCeEEcCCC-cccCchh-hcCCCCCCEEECcCCcCCCchhh
Confidence 99998876 88999999999999 57888877 889999999999995 6666665 68899999999999998876544
Q ss_pred ccC
Q 015983 146 AQK 148 (397)
Q Consensus 146 ~~l 148 (397)
..+
T Consensus 328 ~~l 330 (466)
T 1o6v_A 328 SSL 330 (466)
T ss_dssp GGC
T ss_pred ccC
Confidence 433
No 106
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=3.3e-10 Score=99.47 Aligned_cols=99 Identities=22% Similarity=0.312 Sum_probs=83.1
Q ss_pred EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCCChh-ccC
Q 015983 24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSLPST-ING 101 (397)
Q Consensus 24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~LP~~-i~~ 101 (397)
|++++|.++.+|..+ .++|++|+|++|.|+.+ |..+..+++|+.|+|++ |.+..+|.. +.+
T Consensus 14 l~~s~n~l~~ip~~~----------------~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~-N~l~~l~~~~f~~ 76 (170)
T 3g39_A 14 VDCSGKSLASVPTGI----------------PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDN-NQLTVLPAGVFDK 76 (170)
T ss_dssp EECTTSCCSSCCSCC----------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTTT
T ss_pred EEeCCCCcCccCccC----------------CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCC-CCcCccChhhccC
Confidence 777777787777543 25789999999999988 55689999999999999 688888764 589
Q ss_pred CCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCccc
Q 015983 102 LRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFA 140 (397)
Q Consensus 102 L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~ 140 (397)
+++|++|+|++ +.+..+|. .+..+++|+.|++++|++.
T Consensus 77 l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 77 LTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 99999999999 47778875 5889999999999999865
No 107
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.11 E-value=3.3e-10 Score=117.98 Aligned_cols=141 Identities=14% Similarity=0.111 Sum_probs=109.4
Q ss_pred CCCCcEEeccCCCC---------CccCCCcceEEeecCCcccc-chhhhhhhccc----------cccC-ccCCCCCCCC
Q 015983 1 MKSLKTLVLSGCLK---------LKKFPDIVQVLWDGTDIREL-SFAIELLFRLV----------QEFP-EKTSSKDQLL 59 (397)
Q Consensus 1 L~sL~~L~LsgC~~---------L~~lP~~~~L~Ls~n~l~~L-p~si~~L~~L~----------~~~P-~~l~~l~~L~ 59 (397)
+++|+.|+|++|.. +..+|.+..|++++|.+..+ |..+..+++|+ ...| ..+..+++|+
T Consensus 349 l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~ 428 (606)
T 3t6q_A 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLK 428 (606)
T ss_dssp CTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCC
T ss_pred cCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCC
Confidence 46899999999843 23445566699999999876 45666666665 2233 3478899999
Q ss_pred EEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCC----CChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEEC
Q 015983 60 EIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKS----LPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVE 134 (397)
Q Consensus 60 ~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~----LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~l 134 (397)
+|+|++|.++.. |..++.+++|+.|++++| .+.. .+..+..+++|++|++++|......|..++.+++|+.|++
T Consensus 429 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 507 (606)
T 3t6q_A 429 VLNLSHSLLDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDL 507 (606)
T ss_dssp EEECTTCCCBTTCTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred EEECCCCccCCcCHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEEC
Confidence 999999999865 566889999999999995 5543 2356888999999999997554455788999999999999
Q ss_pred CCCccccc
Q 015983 135 TVTKFAKA 142 (397)
Q Consensus 135 s~n~~~~L 142 (397)
++|.++.+
T Consensus 508 s~N~l~~~ 515 (606)
T 3t6q_A 508 SHNRLTSS 515 (606)
T ss_dssp CSSCCCGG
T ss_pred CCCccCcC
Confidence 99988753
No 108
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.11 E-value=5.7e-10 Score=117.93 Aligned_cols=141 Identities=18% Similarity=0.205 Sum_probs=110.5
Q ss_pred CCCCcEEeccCCCCCccC--------CCcceEEeecCCccccch-hhhhhhccc------------cccCccCCCCCCCC
Q 015983 1 MKSLKTLVLSGCLKLKKF--------PDIVQVLWDGTDIRELSF-AIELLFRLV------------QEFPEKTSSKDQLL 59 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~l--------P~~~~L~Ls~n~l~~Lp~-si~~L~~L~------------~~~P~~l~~l~~L~ 59 (397)
+++|+.|+|++|.....+ +.+..|++++|.+..++. .+..+++|+ +.+|..+..+++|+
T Consensus 404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~ 483 (680)
T 1ziw_A 404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483 (680)
T ss_dssp CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence 468999999998543333 344459999999887654 455555554 35678888999999
Q ss_pred EEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh---------hccCCCcCceeeeecccCCccCCc-ccCCCCC
Q 015983 60 EIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS---------TINGLRCLRMLHLSGCSKLKNAPE-TLGKVES 128 (397)
Q Consensus 60 ~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~---------~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~ 128 (397)
.|+|++|.|+.+|.. +..+++|+.|+|++ +.+..++. .+.++++|++|++++| .+..+|. .++.+++
T Consensus 484 ~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~l~~ 561 (680)
T 1ziw_A 484 ILDLSNNNIANINDDMLEGLEKLEILDLQH-NNLARLWKHANPGGPIYFLKGLSHLHILNLESN-GFDEIPVEVFKDLFE 561 (680)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCS-SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCTTTTTTCTT
T ss_pred EEECCCCCCCcCChhhhccccccCEEeCCC-CCccccchhhccCCcchhhcCCCCCCEEECCCC-CCCCCCHHHcccccC
Confidence 999999999988764 88999999999998 56766532 2678899999999994 6778875 5788999
Q ss_pred CcEEECCCCcccccc
Q 015983 129 LESAVETVTKFAKAE 143 (397)
Q Consensus 129 L~~L~ls~n~~~~L~ 143 (397)
|+.|++++|.++.++
T Consensus 562 L~~L~Ls~N~l~~l~ 576 (680)
T 1ziw_A 562 LKIIDLGLNNLNTLP 576 (680)
T ss_dssp CCEEECCSSCCCCCC
T ss_pred cceeECCCCCCCcCC
Confidence 999999999887654
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.11 E-value=1.1e-10 Score=99.47 Aligned_cols=117 Identities=19% Similarity=0.241 Sum_probs=92.1
Q ss_pred CCCcEEeccCCCCC-ccCCCc-------ceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCc-CC
Q 015983 2 KSLKTLVLSGCLKL-KKFPDI-------VQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRG-LP 72 (397)
Q Consensus 2 ~sL~~L~LsgC~~L-~~lP~~-------~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~-lP 72 (397)
++|+.|+|++|..- +.+|.. ..|++++|.++.+ .. ++.+++|++|+|++|.++. +|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~--------------~~~l~~L~~L~Ls~n~i~~~~~ 81 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-AN--------------LPKLNKLKKLELSDNRVSGGLE 81 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TT--------------CCCCTTCCEEECCSSCCCSCTH
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hh--------------hhcCCCCCEEECCCCcccchHH
Confidence 46888999988533 255543 3388888888766 22 3678899999999999997 77
Q ss_pred ccccCCCCCCEEEecCCCCCCCCC--hhccCCCcCceeeeecccCCccCCc----ccCCCCCCcEEECC
Q 015983 73 ASIELLSGNVLLNLKDRKNLKSLP--STINGLRCLRMLHLSGCSKLKNAPE----TLGKVESLESAVET 135 (397)
Q Consensus 73 ~si~~L~~L~~L~Ls~c~~l~~LP--~~i~~L~sL~~L~Ls~C~~L~~lP~----~~~~L~~L~~L~ls 135 (397)
..++.+++|+.|++++ +.+..+| ..+..+++|++|++++| .+..+|. .+..+++|+.|+++
T Consensus 82 ~~~~~l~~L~~L~ls~-N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 82 VLAEKCPNLTHLNLSG-NKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp HHHHHCTTCCEEECTT-SCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred HHhhhCCCCCEEECCC-CcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence 7788899999999998 5788875 77889999999999995 6777765 57788889888775
No 110
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.10 E-value=3.4e-10 Score=117.36 Aligned_cols=120 Identities=13% Similarity=0.023 Sum_probs=82.8
Q ss_pred cceEEeecCCccccc--hhhhhhhccc-------cccCccCCCCCCCCEEEeeCCCCCcCC---ccccCCCCCCEEEecC
Q 015983 21 IVQVLWDGTDIRELS--FAIELLFRLV-------QEFPEKTSSKDQLLEIHLEGTAIRGLP---ASIELLSGNVLLNLKD 88 (397)
Q Consensus 21 ~~~L~Ls~n~l~~Lp--~si~~L~~L~-------~~~P~~l~~l~~L~~L~Ls~~~i~~lP---~si~~L~~L~~L~Ls~ 88 (397)
+..|++++|.+..++ .....|+.|. +..|..++.+++|++|+|++|.++.+| ..++.+++|+.|++++
T Consensus 333 L~~L~l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~ 412 (562)
T 3a79_B 333 IKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSL 412 (562)
T ss_dssp CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTT
T ss_pred ceEEEccCCCcccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCC
Confidence 445888888876554 2333333332 446777788888888888888888655 4577888888888888
Q ss_pred CCCCCC-CCh-hccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccccc
Q 015983 89 RKNLKS-LPS-TINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 89 c~~l~~-LP~-~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
+.+.. +|. .+..+++|++|++++|.....+|..+. ++|+.|++++|.++.++
T Consensus 413 -N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip 466 (562)
T 3a79_B 413 -NSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIP 466 (562)
T ss_dssp -SCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCC
T ss_pred -CcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccC
Confidence 45655 765 367788888888888654455554433 57888888888776554
No 111
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.10 E-value=3.5e-11 Score=115.91 Aligned_cols=136 Identities=17% Similarity=0.105 Sum_probs=98.1
Q ss_pred CCCCcEEeccCCCC-----CccCCCcceEEeecCCccccchhhhhhhccc------cccCccCCCCCCCCEEEeeCCCCC
Q 015983 1 MKSLKTLVLSGCLK-----LKKFPDIVQVLWDGTDIRELSFAIELLFRLV------QEFPEKTSSKDQLLEIHLEGTAIR 69 (397)
Q Consensus 1 L~sL~~L~LsgC~~-----L~~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~------~~~P~~l~~l~~L~~L~Ls~~~i~ 69 (397)
+++|+.|+|++|.. +..++.+..|+|++|.++.+|.. ..|..|. ..++. ..+++|++|+|++|.++
T Consensus 57 l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~~~-~~L~~L~l~~n~l~~~~~--~~~~~L~~L~l~~N~l~ 133 (317)
T 3o53_A 57 FTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVG-PSIETLHAANNNISRVSC--SRGQGKKNIYLANNKIT 133 (317)
T ss_dssp CTTCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEEEC-TTCCEEECCSSCCSEEEE--CCCSSCEEEECCSSCCC
T ss_pred CCcCCEEECCCCcCCcchhhhhcCCCCEEECcCCccccccCC-CCcCEEECCCCccCCcCc--cccCCCCEEECCCCCCC
Confidence 46899999999843 23455556699999998887643 3344332 22222 34678999999999999
Q ss_pred cCCc-cccCCCCCCEEEecCCCCCCCC-Chhc-cCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccc
Q 015983 70 GLPA-SIELLSGNVLLNLKDRKNLKSL-PSTI-NGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKA 142 (397)
Q Consensus 70 ~lP~-si~~L~~L~~L~Ls~c~~l~~L-P~~i-~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L 142 (397)
.++. .++.+++|+.|+|++ +.+..+ |..+ ..+++|++|++++| .+..+|.. ..+++|+.|++++|.++.+
T Consensus 134 ~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~l~~L~~L~Ls~N~l~~l 206 (317)
T 3o53_A 134 MLRDLDEGCRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQ-VVFAKLKTLDLSSNKLAFM 206 (317)
T ss_dssp SGGGBCTGGGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECTTS-CCCEEECC-CCCTTCCEEECCSSCCCEE
T ss_pred CccchhhhccCCCCEEECCC-CCCCcccHHHHhhccCcCCEEECCCC-cCcccccc-cccccCCEEECCCCcCCcc
Confidence 8754 688889999999998 566665 4444 46889999999985 67777654 3488899999999988765
No 112
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.10 E-value=5.2e-10 Score=118.10 Aligned_cols=57 Identities=21% Similarity=0.226 Sum_probs=34.9
Q ss_pred CCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCccccccc
Q 015983 80 GNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAKAEL 144 (397)
Q Consensus 80 ~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~L~~ 144 (397)
+|+.|++++ +.+..+|.. +++|+.|++++| .+..+| ..+++|+.|++++|.++.++.
T Consensus 202 ~L~~L~L~~-N~l~~l~~~---~~~L~~L~Ls~N-~L~~lp---~~l~~L~~L~Ls~N~L~~lp~ 258 (622)
T 3g06_A 202 ELYKLWAYN-NRLTSLPAL---PSGLKELIVSGN-RLTSLP---VLPSELKELMVSGNRLTSLPM 258 (622)
T ss_dssp TCCEEECCS-SCCSSCCCC---CTTCCEEECCSS-CCSCCC---CCCTTCCEEECCSSCCSCCCC
T ss_pred hhhEEECcC-CcccccCCC---CCCCCEEEccCC-ccCcCC---CCCCcCcEEECCCCCCCcCCc
Confidence 344444444 334444432 366777888774 666676 445678888888888776554
No 113
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.10 E-value=3.7e-10 Score=117.19 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=49.7
Q ss_pred CccCCCCCCCCEEEeeCCCCC--cCCccccCCCCCCEEEecCCCCCCCC-ChhccCCCcCceeeeecccCCccCC-cccC
Q 015983 49 PEKTSSKDQLLEIHLEGTAIR--GLPASIELLSGNVLLNLKDRKNLKSL-PSTINGLRCLRMLHLSGCSKLKNAP-ETLG 124 (397)
Q Consensus 49 P~~l~~l~~L~~L~Ls~~~i~--~lP~si~~L~~L~~L~Ls~c~~l~~L-P~~i~~L~sL~~L~Ls~C~~L~~lP-~~~~ 124 (397)
|..+..+++|+.|+|++|.+. .+|..+..+++|+.|+|++ +.+..+ |..+.++++|++|+|++| ++..+| ..++
T Consensus 462 ~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~-N~L~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~~~~~~ 539 (635)
T 4g8a_A 462 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ-CQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYK 539 (635)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTS-CCCBCCCGGGT
T ss_pred ccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC-CccCCcChHHHcCCCCCCEEECCCC-cCCCCChhHHh
Confidence 334455556666666665432 2445556666666666665 344444 445556666666666663 344443 3455
Q ss_pred CCCCCcEEECCCCcccc
Q 015983 125 KVESLESAVETVTKFAK 141 (397)
Q Consensus 125 ~L~~L~~L~ls~n~~~~ 141 (397)
.+++|+.|++++|+++.
T Consensus 540 ~l~~L~~L~Ls~N~l~~ 556 (635)
T 4g8a_A 540 CLNSLQVLDYSLNHIMT 556 (635)
T ss_dssp TCTTCCEEECTTSCCCB
T ss_pred CCCCCCEEECCCCcCCC
Confidence 56666666666665544
No 114
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.07 E-value=5.6e-10 Score=100.13 Aligned_cols=103 Identities=18% Similarity=0.259 Sum_probs=88.7
Q ss_pred eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCC-hhccC
Q 015983 23 QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLP-STING 101 (397)
Q Consensus 23 ~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP-~~i~~ 101 (397)
.++++++.++++|..+ .++|++|+|++|.|+.+|..+..+++|+.|+|++ +.+..++ ..+.+
T Consensus 14 ~l~~~~~~l~~ip~~~----------------~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~-N~i~~i~~~~f~~ 76 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGI----------------PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSN-NRISTLSNQSFSN 76 (193)
T ss_dssp EEECTTSCCSSCCSCC----------------CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCS-SCCCCCCTTTTTT
T ss_pred EEEcCCCCCCcCCCCC----------------CCCCCEEECCCCcCchhHHHhhcccCCCEEECCC-CcCCEeCHhHccC
Confidence 3788889999888643 1479999999999999999999999999999999 6788886 46899
Q ss_pred CCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCcccccc
Q 015983 102 LRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 102 L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
+++|++|+|++| .+..+| ..+..+++|+.|++++|.++.++
T Consensus 77 l~~L~~L~Ls~N-~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~ 118 (193)
T 2wfh_A 77 MTQLLTLILSYN-RLRCIPPRTFDGLKSLRLLSLHGNDISVVP 118 (193)
T ss_dssp CTTCCEEECCSS-CCCBCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred CCCCCEEECCCC-ccCEeCHHHhCCCCCCCEEECCCCCCCeeC
Confidence 999999999995 666665 56899999999999999987654
No 115
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.05 E-value=5.4e-10 Score=121.72 Aligned_cols=131 Identities=21% Similarity=0.241 Sum_probs=78.8
Q ss_pred EeccCCCCCccCCCcc----eEEeecCCcccc-chhhhhhhccc----------ccc-CccCCCCCCCCEEEeeCCCCCc
Q 015983 7 LVLSGCLKLKKFPDIV----QVLWDGTDIREL-SFAIELLFRLV----------QEF-PEKTSSKDQLLEIHLEGTAIRG 70 (397)
Q Consensus 7 L~LsgC~~L~~lP~~~----~L~Ls~n~l~~L-p~si~~L~~L~----------~~~-P~~l~~l~~L~~L~Ls~~~i~~ 70 (397)
.+.+++ .++.+|.+. .|+|++|.|+.+ |..+.++++|+ ..+ |..+.++++|++|+|++|.|+.
T Consensus 9 ~dcs~~-~L~~vP~lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 9 AFYRFC-NLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp EEESCC-CSSCCCSSCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred EEccCC-CCCCCCCCCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 344444 455555421 166666666654 34455555554 122 5556777777777777777775
Q ss_pred C-CccccCCCCCCEEEecCCCCCCC-CChh--ccCCCcCceeeeecccCCccC-C-cccCCCCCCcEEECCCCccc
Q 015983 71 L-PASIELLSGNVLLNLKDRKNLKS-LPST--INGLRCLRMLHLSGCSKLKNA-P-ETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 71 l-P~si~~L~~L~~L~Ls~c~~l~~-LP~~--i~~L~sL~~L~Ls~C~~L~~l-P-~~~~~L~~L~~L~ls~n~~~ 140 (397)
+ |..++.+++|+.|+|++| .+.. +|.. +.++++|++|+|++| .+..+ | ..++++++|+.|++++|.++
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~i~ 161 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFC-GLSDAVLKDGYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQIF 161 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTC-CCSSCCSTTCCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSCCC
T ss_pred cCHhHccCCcccCEeeCcCC-CCCcccccCccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCcCC
Confidence 5 566777777777777774 4433 4443 667777777777774 33333 2 35667777777777777654
No 116
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.04 E-value=2.1e-10 Score=123.17 Aligned_cols=94 Identities=22% Similarity=0.206 Sum_probs=82.6
Q ss_pred cCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeecccCCccCCcccCCCC
Q 015983 48 FPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCSKLKNAPETLGKVE 127 (397)
Q Consensus 48 ~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~~L~~lP~~~~~L~ 127 (397)
.|..+..+++|+.|+|++|.|..+|..+..+++|+.|+|++ |.+..+|..+++|++|++|+|++| .+..+|..++.|+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~-N~l~~lp~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~ 293 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNG-NSLTELPAEIKNLSNLRVLDLSHN-RLTSLPAELGSCF 293 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTT-SCCSCCCGGGGGGTTCCEEECTTS-CCSSCCSSGGGGT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeC-CcCcccChhhhCCCCCCEEeCcCC-cCCccChhhcCCC
Confidence 45667889999999999999999999999999999999999 688899999999999999999995 6779999999999
Q ss_pred CCcEEECCCCcccccc
Q 015983 128 SLESAVETVTKFAKAE 143 (397)
Q Consensus 128 ~L~~L~ls~n~~~~L~ 143 (397)
+|+.|++++|.++.++
T Consensus 294 ~L~~L~L~~N~l~~lp 309 (727)
T 4b8c_D 294 QLKYFYFFDNMVTTLP 309 (727)
T ss_dssp TCSEEECCSSCCCCCC
T ss_pred CCCEEECCCCCCCccC
Confidence 9999999999988765
No 117
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.04 E-value=9.7e-10 Score=119.67 Aligned_cols=110 Identities=16% Similarity=0.179 Sum_probs=56.6
Q ss_pred CCCcEEeccCCCCCcc--------CCCcceEEeecC-Ccccc-chhhhhhhccc----------cccCccCCCCCCCCEE
Q 015983 2 KSLKTLVLSGCLKLKK--------FPDIVQVLWDGT-DIREL-SFAIELLFRLV----------QEFPEKTSSKDQLLEI 61 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~--------lP~~~~L~Ls~n-~l~~L-p~si~~L~~L~----------~~~P~~l~~l~~L~~L 61 (397)
++|+.|+|++|. ++. ++.+..|+|++| .+..+ |..+.+|++|+ ...|..++++++|++|
T Consensus 24 ~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 456666666652 222 222233666665 23344 34455555444 2235555666666666
Q ss_pred EeeCCCCCc-CCcc--ccCCCCCCEEEecCCCCCCCC--ChhccCCCcCceeeeecc
Q 015983 62 HLEGTAIRG-LPAS--IELLSGNVLLNLKDRKNLKSL--PSTINGLRCLRMLHLSGC 113 (397)
Q Consensus 62 ~Ls~~~i~~-lP~s--i~~L~~L~~L~Ls~c~~l~~L--P~~i~~L~sL~~L~Ls~C 113 (397)
+|++|.++. +|.. ++.+++|+.|+|++ +.+..+ +..++++++|++|+|++|
T Consensus 103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~-N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSK-NQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp ECTTCCCSSCCSTTCCCSSCSSCCEEEEES-CCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred eCcCCCCCcccccCccccccCCCCEEECCC-CcccccccchhHhhCCCCCEEECCCC
Confidence 666666653 3333 55666666666665 344433 234556666666666654
No 118
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.01 E-value=1.2e-09 Score=97.61 Aligned_cols=102 Identities=19% Similarity=0.256 Sum_probs=86.7
Q ss_pred eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc--ccCCCCCCEEEecCCCCCCCC-Chhc
Q 015983 23 QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS--IELLSGNVLLNLKDRKNLKSL-PSTI 99 (397)
Q Consensus 23 ~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s--i~~L~~L~~L~Ls~c~~l~~L-P~~i 99 (397)
.|+++++.++++|..+. .+|++|+|++|.|+.+|.. ++.+++|+.|+|++ +.+..+ |..+
T Consensus 12 ~l~~s~~~l~~ip~~~~----------------~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~~ 74 (192)
T 1w8a_A 12 TVDCTGRGLKEIPRDIP----------------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGIEPNAF 74 (192)
T ss_dssp EEECTTSCCSSCCSCCC----------------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCBCTTTT
T ss_pred EEEcCCCCcCcCccCCC----------------CCCCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCcCHhHc
Confidence 48899999998886531 2799999999999999864 89999999999999 577777 7789
Q ss_pred cCCCcCceeeeecccCCccCC-cccCCCCCCcEEECCCCccccc
Q 015983 100 NGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVETVTKFAKA 142 (397)
Q Consensus 100 ~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls~n~~~~L 142 (397)
.++++|++|+|++| .+..++ ..+..+++|+.|++++|.++.+
T Consensus 75 ~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 117 (192)
T 1w8a_A 75 EGASHIQELQLGEN-KIKEISNKMFLGLHQLKTLNLYDNQISCV 117 (192)
T ss_dssp TTCTTCCEEECCSC-CCCEECSSSSTTCTTCCEEECCSSCCCEE
T ss_pred CCcccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCCee
Confidence 99999999999995 566654 5588999999999999988764
No 119
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.00 E-value=5.9e-10 Score=98.01 Aligned_cols=110 Identities=17% Similarity=0.152 Sum_probs=90.6
Q ss_pred CCCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCCh
Q 015983 18 FPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPS 97 (397)
Q Consensus 18 lP~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~ 97 (397)
.+.+..|++++|.++.+|. +. ...++|++|+|++|.|+.+ ..++.+++|+.|+|++ +.+..+|.
T Consensus 18 ~~~L~~L~l~~n~l~~i~~-~~-------------~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~-N~l~~~~~ 81 (176)
T 1a9n_A 18 AVRDRELDLRGYKIPVIEN-LG-------------ATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNN-NRICRIGE 81 (176)
T ss_dssp TTSCEEEECTTSCCCSCCC-GG-------------GGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCS-SCCCEECS
T ss_pred cCCceEEEeeCCCCchhHH-hh-------------hcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCC-CcccccCc
Confidence 3445559999999988753 21 1234899999999999988 6789999999999999 68888886
Q ss_pred hc-cCCCcCceeeeecccCCccCCc--ccCCCCCCcEEECCCCccccccc
Q 015983 98 TI-NGLRCLRMLHLSGCSKLKNAPE--TLGKVESLESAVETVTKFAKAEL 144 (397)
Q Consensus 98 ~i-~~L~sL~~L~Ls~C~~L~~lP~--~~~~L~~L~~L~ls~n~~~~L~~ 144 (397)
.+ ..+++|++|++++| .+..+|. .+..+++|+.|++++|.++.++.
T Consensus 82 ~~~~~l~~L~~L~L~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~ 130 (176)
T 1a9n_A 82 GLDQALPDLTELILTNN-SLVELGDLDPLASLKSLTYLCILRNPVTNKKH 130 (176)
T ss_dssp CHHHHCTTCCEEECCSC-CCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred chhhcCCCCCEEECCCC-cCCcchhhHhhhcCCCCCEEEecCCCCCCcHh
Confidence 54 88999999999995 7788887 78899999999999999876553
No 120
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.99 E-value=9.8e-10 Score=107.28 Aligned_cols=140 Identities=16% Similarity=0.136 Sum_probs=90.7
Q ss_pred CCCcEEeccCCCCCccCCC--------cceEEeecCCcc-ccchh-hhhhhccc-----------cccCccCCCCCCCCE
Q 015983 2 KSLKTLVLSGCLKLKKFPD--------IVQVLWDGTDIR-ELSFA-IELLFRLV-----------QEFPEKTSSKDQLLE 60 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~lP~--------~~~L~Ls~n~l~-~Lp~s-i~~L~~L~-----------~~~P~~l~~l~~L~~ 60 (397)
++|+.|+|++| +++.+|. +..|+|++|.+. .+|.. +.+|+++. ...|..+..+++|++
T Consensus 30 ~~l~~L~Ls~N-~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~ 108 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY 108 (350)
T ss_dssp TTCSEEEEESC-CCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCE
T ss_pred CCCCEEEccCC-cCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhcccccc
Confidence 47899999997 5666654 333999999875 46653 45565543 223567788999999
Q ss_pred EEeeCCCCCcCCcc-ccCCC--------------------------CCCEEEecCCCCCCCCChhccCCCcCceeeeecc
Q 015983 61 IHLEGTAIRGLPAS-IELLS--------------------------GNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGC 113 (397)
Q Consensus 61 L~Ls~~~i~~lP~s-i~~L~--------------------------~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C 113 (397)
|++++|.|+.+|.. +.... .|+.|+|++ +.++.+|..+....+|+.|+++++
T Consensus 109 L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~-N~i~~i~~~~f~~~~L~~l~l~~~ 187 (350)
T 4ay9_X 109 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNK-NGIQEIHNSAFNGTQLDELNLSDN 187 (350)
T ss_dssp EEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCS-SCCCEECTTSSTTEEEEEEECTTC
T ss_pred ccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccc-ccccCCChhhccccchhHHhhccC
Confidence 99999988876642 22222 344555555 455555555445556666666666
Q ss_pred cCCccCCc-ccCCCCCCcEEECCCCcccccc
Q 015983 114 SKLKNAPE-TLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 114 ~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
+.++.+|. .+..+++|+.|++++|+++.++
T Consensus 188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp 218 (350)
T 4ay9_X 188 NNLEELPNDVFHGASGPVILDISRTRIHSLP 218 (350)
T ss_dssp TTCCCCCTTTTTTEECCSEEECTTSCCCCCC
T ss_pred CcccCCCHHHhccCcccchhhcCCCCcCccC
Confidence 66666664 4566667777777777665543
No 121
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.98 E-value=2.7e-09 Score=94.15 Aligned_cols=101 Identities=17% Similarity=0.265 Sum_probs=83.6
Q ss_pred CcEEeccCCCCCccCCCcc-----eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc-ccC
Q 015983 4 LKTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS-IEL 77 (397)
Q Consensus 4 L~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s-i~~ 77 (397)
-+.++++++ .++.+|... .|+|++|.|+.+++. .+..+++|++|+|++|.|+.+|.. +..
T Consensus 14 ~~~l~~~~n-~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~-------------~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 79 (174)
T 2r9u_A 14 QTLVNCQNI-RLASVPAGIPTDKQRLWLNNNQITKLEPG-------------VFDHLVNLQQLYFNSNKLTAIPTGVFDK 79 (174)
T ss_dssp SSEEECCSS-CCSSCCSCCCTTCSEEECCSSCCCCCCTT-------------TTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CcEEEeCCC-CCCccCCCcCCCCcEEEeCCCCccccCHH-------------HhcCCcCCCEEECCCCCCCccChhHhCC
Confidence 367899987 678888643 399999999987542 347788999999999999999986 589
Q ss_pred CCCCCEEEecCCCCCCCCChh-ccCCCcCceeeeecccCCccCC
Q 015983 78 LSGNVLLNLKDRKNLKSLPST-INGLRCLRMLHLSGCSKLKNAP 120 (397)
Q Consensus 78 L~~L~~L~Ls~c~~l~~LP~~-i~~L~sL~~L~Ls~C~~L~~lP 120 (397)
+++|+.|+|++ |.+..+|.. +..+++|++|+|++| .+...+
T Consensus 80 l~~L~~L~L~~-N~l~~l~~~~~~~l~~L~~L~L~~N-~~~c~~ 121 (174)
T 2r9u_A 80 LTQLTQLDLND-NHLKSIPRGAFDNLKSLTHIYLYNN-PWDCEC 121 (174)
T ss_dssp CTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSS-CBCTTB
T ss_pred cchhhEEECCC-CccceeCHHHhccccCCCEEEeCCC-Cccccc
Confidence 99999999999 789999875 889999999999995 454444
No 122
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.97 E-value=2.2e-09 Score=94.14 Aligned_cols=95 Identities=25% Similarity=0.329 Sum_probs=80.9
Q ss_pred CcEEeccCCCCCccCCCcc-----eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc-ccC
Q 015983 4 LKTLVLSGCLKLKKFPDIV-----QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS-IEL 77 (397)
Q Consensus 4 L~~L~LsgC~~L~~lP~~~-----~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s-i~~ 77 (397)
.+.|+++++ .++.+|... .|+|++|.|+.+++. .+..+++|++|+|++|.|+.+|.. +..
T Consensus 11 ~~~l~~s~n-~l~~ip~~~~~~l~~L~L~~N~i~~~~~~-------------~~~~l~~L~~L~Ls~N~l~~l~~~~f~~ 76 (170)
T 3g39_A 11 GTTVDCSGK-SLASVPTGIPTTTQVLYLYDNQITKLEPG-------------VFDRLTQLTRLDLDNNQLTVLPAGVFDK 76 (170)
T ss_dssp TTEEECTTS-CCSSCCSCCCTTCSEEECCSSCCCCCCTT-------------TTTTCTTCSEEECCSSCCCCCCTTTTTT
T ss_pred CCEEEeCCC-CcCccCccCCCCCcEEEcCCCcCCccChh-------------hhcCcccCCEEECCCCCcCccChhhccC
Confidence 578999997 678888533 399999999987543 246788999999999999999876 589
Q ss_pred CCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecc
Q 015983 78 LSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGC 113 (397)
Q Consensus 78 L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C 113 (397)
+++|+.|+|++ |.+..+|. .+..+++|++|+|++|
T Consensus 77 l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N 112 (170)
T 3g39_A 77 LTQLTQLSLND-NQLKSIPRGAFDNLKSLTHIWLLNN 112 (170)
T ss_dssp CTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCCCCEEECCC-CccCEeCHHHhcCCCCCCEEEeCCC
Confidence 99999999999 68998876 5889999999999995
No 123
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.91 E-value=1.5e-10 Score=111.44 Aligned_cols=137 Identities=12% Similarity=0.104 Sum_probs=90.1
Q ss_pred CCCcEEeccCCCCCc------cCCCcceEEeecCCccc--cchhhhhhhccc----------cccCccCCCCCCCCEEEe
Q 015983 2 KSLKTLVLSGCLKLK------KFPDIVQVLWDGTDIRE--LSFAIELLFRLV----------QEFPEKTSSKDQLLEIHL 63 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~------~lP~~~~L~Ls~n~l~~--Lp~si~~L~~L~----------~~~P~~l~~l~~L~~L~L 63 (397)
++|+.|++++|..-+ .++.+..|+|++|.++. +|..+..+++|+ ...|..+..+++|++|+|
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 456777777763222 22334447777777653 555555555554 234455666788888888
Q ss_pred eCC-CCC--cCCccccCCCCCCEEEecCCCCCCC--CChhccCCC-cCceeeeeccc-CC--ccCCcccCCCCCCcEEEC
Q 015983 64 EGT-AIR--GLPASIELLSGNVLLNLKDRKNLKS--LPSTINGLR-CLRMLHLSGCS-KL--KNAPETLGKVESLESAVE 134 (397)
Q Consensus 64 s~~-~i~--~lP~si~~L~~L~~L~Ls~c~~l~~--LP~~i~~L~-sL~~L~Ls~C~-~L--~~lP~~~~~L~~L~~L~l 134 (397)
++| .++ .+|..+..+++|+.|++++|..+.. +|..+..++ +|++|++++|. .+ ..+|..+..+++|+.|++
T Consensus 150 ~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l 229 (336)
T 2ast_B 150 SGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229 (336)
T ss_dssp TTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEEC
T ss_pred CCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeC
Confidence 887 676 3666677788888888888646654 566677777 88888888864 23 445666667778888888
Q ss_pred CCCc
Q 015983 135 TVTK 138 (397)
Q Consensus 135 s~n~ 138 (397)
++|.
T Consensus 230 ~~~~ 233 (336)
T 2ast_B 230 SDSV 233 (336)
T ss_dssp TTCT
T ss_pred CCCC
Confidence 8876
No 124
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.90 E-value=4.2e-10 Score=111.02 Aligned_cols=137 Identities=17% Similarity=0.149 Sum_probs=79.3
Q ss_pred CCCcEEeccCCC-----------CCccCCCcceEEeecCCcc----ccchhh-------hhhhccc--------------
Q 015983 2 KSLKTLVLSGCL-----------KLKKFPDIVQVLWDGTDIR----ELSFAI-------ELLFRLV-------------- 45 (397)
Q Consensus 2 ~sL~~L~LsgC~-----------~L~~lP~~~~L~Ls~n~l~----~Lp~si-------~~L~~L~-------------- 45 (397)
++|+.|+|++|. .+..++.+..|+|++|.+. .+|..+ ..+++|+
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 467777777762 2455666666777665444 233333 2333333
Q ss_pred cccCccCCCCCCCCEEEeeCCCCCc-----CCccccCC---------CCCCEEEecCCCCCC--CCC---hhccCCCcCc
Q 015983 46 QEFPEKTSSKDQLLEIHLEGTAIRG-----LPASIELL---------SGNVLLNLKDRKNLK--SLP---STINGLRCLR 106 (397)
Q Consensus 46 ~~~P~~l~~l~~L~~L~Ls~~~i~~-----lP~si~~L---------~~L~~L~Ls~c~~l~--~LP---~~i~~L~sL~ 106 (397)
..+|..+..+++|++|+|++|.++. ++..+..+ ++|+.|+|++| .+. .+| ..+..+++|+
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~ 190 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLH 190 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHHHHHHHCTTCC
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC-CCCcHHHHHHHHHHHhCCCcC
Confidence 1244455666777777777777752 23333334 67777777773 453 344 3455667777
Q ss_pred eeeeecccCCc------cCCcccCCCCCCcEEECCCCccc
Q 015983 107 MLHLSGCSKLK------NAPETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 107 ~L~Ls~C~~L~------~lP~~~~~L~~L~~L~ls~n~~~ 140 (397)
+|++++| .+. .+|..+..+++|+.|++++|.++
T Consensus 191 ~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~ 229 (386)
T 2ca6_A 191 TVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT 229 (386)
T ss_dssp EEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred EEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence 7777775 343 23335566777777777777663
No 125
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.89 E-value=3.5e-11 Score=108.03 Aligned_cols=103 Identities=20% Similarity=0.219 Sum_probs=76.5
Q ss_pred cceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCCCChhcc
Q 015983 21 IVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKSLPSTIN 100 (397)
Q Consensus 21 ~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~ 100 (397)
+..|+|++|.++.+| .+ ..+++|++|+|++|.|+.+|..+..+++|+.|+|++ +.+..+| .+.
T Consensus 50 L~~L~ls~n~l~~l~-~~--------------~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~-N~l~~l~-~~~ 112 (198)
T 1ds9_A 50 CKHLALSTNNIEKIS-SL--------------SGMENLRILSLGRNLIKKIENLDAVADTLEELWISY-NQIASLS-GIE 112 (198)
T ss_dssp CSEEECSEEEESCCC-CH--------------HHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEE-EECCCHH-HHH
T ss_pred CCEEECCCCCCcccc-cc--------------ccCCCCCEEECCCCCcccccchhhcCCcCCEEECcC-CcCCcCC-ccc
Confidence 333666666666655 33 445678888888888888888777778888888888 5777777 477
Q ss_pred CCCcCceeeeecccCCccCCc--ccCCCCCCcEEECCCCcccc
Q 015983 101 GLRCLRMLHLSGCSKLKNAPE--TLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 101 ~L~sL~~L~Ls~C~~L~~lP~--~~~~L~~L~~L~ls~n~~~~ 141 (397)
.+++|++|++++| .+..+|. .+..+++|+.|++++|.+..
T Consensus 113 ~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~l~~ 154 (198)
T 1ds9_A 113 KLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNPLYN 154 (198)
T ss_dssp HHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred cCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence 7888888888884 5666654 56788888888888887644
No 126
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.88 E-value=1.3e-08 Score=89.29 Aligned_cols=103 Identities=19% Similarity=0.355 Sum_probs=86.3
Q ss_pred eEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hcc
Q 015983 23 QVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TIN 100 (397)
Q Consensus 23 ~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~ 100 (397)
.++++++.++.+|..+ .++|++|+|++|.++.+|.. ++.+++|+.|+|++ +.+..+|. .+.
T Consensus 11 ~l~~~~~~l~~~p~~~----------------~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~ 73 (177)
T 2o6r_A 11 EIRCNSKGLTSVPTGI----------------PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQ-NQIQSLPDGVFD 73 (177)
T ss_dssp EEECCSSCCSSCCTTC----------------CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCS-SCCCCCCTTTTT
T ss_pred EEEecCCCCccCCCCC----------------CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCC-CcceEeChhHcc
Confidence 4788888888887543 25799999999999998865 68999999999999 68888876 468
Q ss_pred CCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCcccccc
Q 015983 101 GLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFAKAE 143 (397)
Q Consensus 101 ~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~~L~ 143 (397)
.+++|++|++++| .+..+|. .+..+++|+.|++++|.++.++
T Consensus 74 ~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~ 116 (177)
T 2o6r_A 74 KLTKLTILYLHEN-KLQSLPNGVFDKLTQLKELALDTNQLKSVP 116 (177)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCCccCEEECCCC-CccccCHHHhhCCcccCEEECcCCcceEeC
Confidence 9999999999995 6777765 4688999999999999887654
No 127
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=98.86 E-value=6.3e-10 Score=109.76 Aligned_cols=139 Identities=17% Similarity=0.182 Sum_probs=101.3
Q ss_pred CCCCcEEeccCCCCC-----------ccCCCcceEEeecCCccc-----cchhhhhh---------hccc----------
Q 015983 1 MKSLKTLVLSGCLKL-----------KKFPDIVQVLWDGTDIRE-----LSFAIELL---------FRLV---------- 45 (397)
Q Consensus 1 L~sL~~L~LsgC~~L-----------~~lP~~~~L~Ls~n~l~~-----Lp~si~~L---------~~L~---------- 45 (397)
+++|++|+|++|..- ..+|.+..|+|++|.++. ++..+..+ ++|+
T Consensus 93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~ 172 (386)
T 2ca6_A 93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172 (386)
T ss_dssp CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence 467889999988432 245888889999988863 33333333 4444
Q ss_pred -cccC---ccCCCCCCCCEEEeeCCCCC------cCCccccCCCCCCEEEecCCCCC-----CCCChhccCCCcCceeee
Q 015983 46 -QEFP---EKTSSKDQLLEIHLEGTAIR------GLPASIELLSGNVLLNLKDRKNL-----KSLPSTINGLRCLRMLHL 110 (397)
Q Consensus 46 -~~~P---~~l~~l~~L~~L~Ls~~~i~------~lP~si~~L~~L~~L~Ls~c~~l-----~~LP~~i~~L~sL~~L~L 110 (397)
..+| ..+..+++|++|+|++|.|+ -+|..+..+++|+.|+|++| .+ ..+|..+..+++|++|+|
T Consensus 173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L 251 (386)
T 2ca6_A 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGL 251 (386)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEEC
T ss_pred cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEEC
Confidence 1223 34556789999999999998 24447888999999999984 56 567888889999999999
Q ss_pred ecccCCcc-----CCccc--CCCCCCcEEECCCCcccc
Q 015983 111 SGCSKLKN-----APETL--GKVESLESAVETVTKFAK 141 (397)
Q Consensus 111 s~C~~L~~-----lP~~~--~~L~~L~~L~ls~n~~~~ 141 (397)
++|. +.. +|..+ +.+++|+.|++++|.++.
T Consensus 252 ~~n~-i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~ 288 (386)
T 2ca6_A 252 NDCL-LSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288 (386)
T ss_dssp TTCC-CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred CCCC-CchhhHHHHHHHHhhccCCCeEEEECcCCcCCH
Confidence 9964 433 45555 448889999999998876
No 128
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.86 E-value=9.6e-11 Score=105.10 Aligned_cols=122 Identities=19% Similarity=0.219 Sum_probs=95.0
Q ss_pred CCCCcEEeccCCCCCccCCCc------ceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCcc
Q 015983 1 MKSLKTLVLSGCLKLKKFPDI------VQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPAS 74 (397)
Q Consensus 1 L~sL~~L~LsgC~~L~~lP~~------~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~s 74 (397)
+++|+.|+|++| .++.+|.+ ..|++++|.++.+|..+.. +++|++|+|++|.++.+| .
T Consensus 47 l~~L~~L~ls~n-~l~~l~~~~~l~~L~~L~l~~n~l~~l~~~~~~--------------~~~L~~L~L~~N~l~~l~-~ 110 (198)
T 1ds9_A 47 LKACKHLALSTN-NIEKISSLSGMENLRILSLGRNLIKKIENLDAV--------------ADTLEELWISYNQIASLS-G 110 (198)
T ss_dssp TTTCSEEECSEE-EESCCCCHHHHTTCCEEEEEEEEECSCSSHHHH--------------HHHCSEEEEEEEECCCHH-H
T ss_pred CCCCCEEECCCC-CCccccccccCCCCCEEECCCCCcccccchhhc--------------CCcCCEEECcCCcCCcCC-c
Confidence 568999999998 56667633 2399999999988876543 456899999999999988 6
Q ss_pred ccCCCCCCEEEecCCCCCCCCCh--hccCCCcCceeeeecccCCccCCc----------ccCCCCCCcEEECCCCcccc
Q 015983 75 IELLSGNVLLNLKDRKNLKSLPS--TINGLRCLRMLHLSGCSKLKNAPE----------TLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 75 i~~L~~L~~L~Ls~c~~l~~LP~--~i~~L~sL~~L~Ls~C~~L~~lP~----------~~~~L~~L~~L~ls~n~~~~ 141 (397)
+..+++|+.|++++ +.+..+|. .+..+++|++|++++|.....+|. .+..+++|+.|+ ++.++.
T Consensus 111 ~~~l~~L~~L~l~~-N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 111 IEKLVNLRVLYMSN-NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHSSEEEESE-EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred cccCCCCCEEECCC-CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 88899999999999 67888765 788999999999999744333333 256778888775 555543
No 129
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.84 E-value=1.1e-08 Score=99.33 Aligned_cols=101 Identities=16% Similarity=0.117 Sum_probs=80.9
Q ss_pred EEeecC-CccccchhhhhhhccccccCccCCCCCCCCEEEeeC-CCCCcCC-ccccCCCCCCEEEecCCCCCCCCCh-hc
Q 015983 24 VLWDGT-DIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEG-TAIRGLP-ASIELLSGNVLLNLKDRKNLKSLPS-TI 99 (397)
Q Consensus 24 L~Ls~n-~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~-~~i~~lP-~si~~L~~L~~L~Ls~c~~l~~LP~-~i 99 (397)
++++++ .|+.+|. | ..+++|++|+|++ |.|+.+| ..|+.|++|+.|+|++ |.+..+|. .+
T Consensus 13 v~~~~~n~l~~ip~-l--------------~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~-N~l~~~~~~~~ 76 (347)
T 2ifg_A 13 LRCTRDGALDSLHH-L--------------PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK-SGLRFVAPDAF 76 (347)
T ss_dssp EECCSSCCCTTTTT-S--------------CSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCS-SCCCEECTTGG
T ss_pred EEcCCCCCCCccCC-C--------------CCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCC-CccceeCHHHh
Confidence 566665 6776664 4 6778899999996 9999988 4699999999999999 57887754 78
Q ss_pred cCCCcCceeeeecccCCccCCcccCCCCCCcEEECCCCcccc
Q 015983 100 NGLRCLRMLHLSGCSKLKNAPETLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 100 ~~L~sL~~L~Ls~C~~L~~lP~~~~~L~~L~~L~ls~n~~~~ 141 (397)
.+|++|++|+|++ +.+..+|........|+.|++.+|.+.-
T Consensus 77 ~~l~~L~~L~l~~-N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 77 HFTPRLSRLNLSF-NALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp GSCSCCCEEECCS-SCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred cCCcCCCEEeCCC-CccceeCHHHcccCCceEEEeeCCCccC
Confidence 9999999999999 5788888654333349999999998763
No 130
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=98.84 E-value=3.9e-10 Score=108.59 Aligned_cols=134 Identities=17% Similarity=0.161 Sum_probs=84.4
Q ss_pred CcEEeccCCCCC----ccC--CCcceEEeecCCccccchhhhhhhccc-----------cccCccCCCCCCCCEEEeeCC
Q 015983 4 LKTLVLSGCLKL----KKF--PDIVQVLWDGTDIRELSFAIELLFRLV-----------QEFPEKTSSKDQLLEIHLEGT 66 (397)
Q Consensus 4 L~~L~LsgC~~L----~~l--P~~~~L~Ls~n~l~~Lp~si~~L~~L~-----------~~~P~~l~~l~~L~~L~Ls~~ 66 (397)
++.|+|+++..- ..+ +.+..|++++|.+...+..+..+++|+ ..+|..+..+++|++|+|++|
T Consensus 49 ~~~l~l~~~~~~~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~ 128 (336)
T 2ast_B 49 WQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGL 128 (336)
T ss_dssp SSEEECTTCBCCHHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTC
T ss_pred heeeccccccCCHHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCc
Confidence 566777765321 111 344447777777766555554455444 125556667777777777777
Q ss_pred CCC-cCCccccCCCCCCEEEecCCCCCC--CCChhccCCCcCceeeeecccCCcc--CCcccCCCC-CCcEEECCCC
Q 015983 67 AIR-GLPASIELLSGNVLLNLKDRKNLK--SLPSTINGLRCLRMLHLSGCSKLKN--APETLGKVE-SLESAVETVT 137 (397)
Q Consensus 67 ~i~-~lP~si~~L~~L~~L~Ls~c~~l~--~LP~~i~~L~sL~~L~Ls~C~~L~~--lP~~~~~L~-~L~~L~ls~n 137 (397)
.++ ..|..+..+++|+.|+|++|..+. .+|..+.++++|++|++++|..+.. ++..+..++ +|+.|++++|
T Consensus 129 ~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 129 RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence 766 456667777777777777765555 2566666777777777777644543 455566667 7777777777
No 131
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.76 E-value=2.2e-08 Score=97.69 Aligned_cols=137 Identities=10% Similarity=0.054 Sum_probs=103.4
Q ss_pred cEEeccCCCCCccCCCc-----ceEEeecCCccccchh-hhhhhccc----------cccCc-cCCCCCCCCE-EEeeCC
Q 015983 5 KTLVLSGCLKLKKFPDI-----VQVLWDGTDIRELSFA-IELLFRLV----------QEFPE-KTSSKDQLLE-IHLEGT 66 (397)
Q Consensus 5 ~~L~LsgC~~L~~lP~~-----~~L~Ls~n~l~~Lp~s-i~~L~~L~----------~~~P~-~l~~l~~L~~-L~Ls~~ 66 (397)
++++.+++ .++++|.. ..|+|++|.|+.||.. +.+|++|+ +.+|. .+.++++|.+ +.+.+|
T Consensus 12 ~~v~C~~~-~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N 90 (350)
T 4ay9_X 12 RVFLCQES-KVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 90 (350)
T ss_dssp TEEEEEST-TCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred CEEEecCC-CCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence 45666664 68888753 3399999999999974 67777766 33443 4677888775 566778
Q ss_pred CCCcCC-ccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCC-CCCcEEECCCCccccc
Q 015983 67 AIRGLP-ASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKV-ESLESAVETVTKFAKA 142 (397)
Q Consensus 67 ~i~~lP-~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L-~~L~~L~ls~n~~~~L 142 (397)
+|+.+| ..+..+++|+.|++++ +.+..+|. .+.....+..|++.+++.+..+|. .+..+ ..|+.|++++|.++.+
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~l~~-n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 91 NLLYINPEAFQNLPNLQYLLISN-TGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TCCEECTTSBCCCTTCCEEEEEE-ECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred cccccCchhhhhccccccccccc-cccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 999885 5689999999999999 67888875 445667788999998888998875 34444 3588899999988765
Q ss_pred c
Q 015983 143 E 143 (397)
Q Consensus 143 ~ 143 (397)
+
T Consensus 170 ~ 170 (350)
T 4ay9_X 170 H 170 (350)
T ss_dssp C
T ss_pred C
Confidence 4
No 132
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.56 E-value=1.7e-08 Score=98.83 Aligned_cols=137 Identities=14% Similarity=0.108 Sum_probs=93.7
Q ss_pred CCCcEEeccCCCCC-----------ccC-CCcceEEeecCCccccchh-hh--------hhhccc-----------cccC
Q 015983 2 KSLKTLVLSGCLKL-----------KKF-PDIVQVLWDGTDIRELSFA-IE--------LLFRLV-----------QEFP 49 (397)
Q Consensus 2 ~sL~~L~LsgC~~L-----------~~l-P~~~~L~Ls~n~l~~Lp~s-i~--------~L~~L~-----------~~~P 49 (397)
++|++|+|++|..- ..+ +.+..|+|++|.++..+.. +. .|+.|. ..++
T Consensus 80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~ 159 (362)
T 3goz_A 80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI 159 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence 67999999998421 122 5666699999998876642 22 222222 1333
Q ss_pred ccCCCCC-CCCEEEeeCCCCCcCCc-----cccCC-CCCCEEEecCCCCCCC-----CChhccCC-CcCceeeeecccCC
Q 015983 50 EKTSSKD-QLLEIHLEGTAIRGLPA-----SIELL-SGNVLLNLKDRKNLKS-----LPSTINGL-RCLRMLHLSGCSKL 116 (397)
Q Consensus 50 ~~l~~l~-~L~~L~Ls~~~i~~lP~-----si~~L-~~L~~L~Ls~c~~l~~-----LP~~i~~L-~sL~~L~Ls~C~~L 116 (397)
+.+..++ +|++|+|++|.|+..+. .+..+ ++|+.|+|++ +.+.. ++..+..+ ++|++|+|++| .+
T Consensus 160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l 237 (362)
T 3goz_A 160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSA-NLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CL 237 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT-SCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CC
T ss_pred HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCC-CCCChhHHHHHHHHHhcCCCCceEEECcCC-CC
Confidence 4444454 89999999999986553 34455 5999999998 56776 66666664 58999999995 56
Q ss_pred ccCC-----cccCCCCCCcEEECCCCccc
Q 015983 117 KNAP-----ETLGKVESLESAVETVTKFA 140 (397)
Q Consensus 117 ~~lP-----~~~~~L~~L~~L~ls~n~~~ 140 (397)
...+ ..+..++.|+.|++++|.+.
T Consensus 238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~ 266 (362)
T 3goz_A 238 HGPSLENLKLLKDSLKHLQTVYLDYDIVK 266 (362)
T ss_dssp CCCCHHHHHHTTTTTTTCSEEEEEHHHHT
T ss_pred CcHHHHHHHHHHhcCCCccEEEeccCCcc
Confidence 5543 34577888999999998744
No 133
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.56 E-value=2.1e-08 Score=98.19 Aligned_cols=84 Identities=17% Similarity=0.166 Sum_probs=46.5
Q ss_pred CCCCEEEeeCCCCCcCCcc-----ccC-CCCCCEEEecCCCCCC-----CCChhccCCC-cCceeeeecccCCccCC-c-
Q 015983 56 DQLLEIHLEGTAIRGLPAS-----IEL-LSGNVLLNLKDRKNLK-----SLPSTINGLR-CLRMLHLSGCSKLKNAP-E- 121 (397)
Q Consensus 56 ~~L~~L~Ls~~~i~~lP~s-----i~~-L~~L~~L~Ls~c~~l~-----~LP~~i~~L~-sL~~L~Ls~C~~L~~lP-~- 121 (397)
++|++|+|++|.|+..+.. +.. .++|+.|+|++ +.+. .++..+..++ +|++|+|++| .+...+ .
T Consensus 109 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~-N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~ 186 (362)
T 3goz_A 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRG-NDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAE 186 (362)
T ss_dssp TTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTT-SCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHH
T ss_pred CCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccC-CcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHH
Confidence 5677777777777655432 233 24677777776 3454 3344444444 6777777764 333322 1
Q ss_pred ---ccCCC-CCCcEEECCCCcccc
Q 015983 122 ---TLGKV-ESLESAVETVTKFAK 141 (397)
Q Consensus 122 ---~~~~L-~~L~~L~ls~n~~~~ 141 (397)
.+..+ ++|+.|++++|.++.
T Consensus 187 l~~~l~~~~~~L~~L~Ls~N~i~~ 210 (362)
T 3goz_A 187 LAKFLASIPASVTSLDLSANLLGL 210 (362)
T ss_dssp HHHHHHTSCTTCCEEECTTSCGGG
T ss_pred HHHHHHhCCCCCCEEECCCCCCCh
Confidence 22333 366666776666554
No 134
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.50 E-value=1.9e-07 Score=90.34 Aligned_cols=83 Identities=14% Similarity=0.173 Sum_probs=72.6
Q ss_pred CEEEeeCC-CCCcCCccccCCCCCCEEEecCCCCCCCCC-hhccCCCcCceeeeecccCCccCC-cccCCCCCCcEEECC
Q 015983 59 LEIHLEGT-AIRGLPASIELLSGNVLLNLKDRKNLKSLP-STINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVET 135 (397)
Q Consensus 59 ~~L~Ls~~-~i~~lP~si~~L~~L~~L~Ls~c~~l~~LP-~~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~ls 135 (397)
..++++++ .++.+|. +..+++|+.|+|+++|.+..+| ..+.+|++|+.|+|++| .+..+| ..+..|++|+.|+++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS-GLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSS-CCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCC-ccceeCHHHhcCCcCCCEEeCC
Confidence 46788888 9999999 9999999999999757899887 57999999999999996 566665 578999999999999
Q ss_pred CCcccccc
Q 015983 136 VTKFAKAE 143 (397)
Q Consensus 136 ~n~~~~L~ 143 (397)
+|.++.++
T Consensus 89 ~N~l~~~~ 96 (347)
T 2ifg_A 89 FNALESLS 96 (347)
T ss_dssp SSCCSCCC
T ss_pred CCccceeC
Confidence 99988765
No 135
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.44 E-value=2.3e-08 Score=100.15 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=31.4
Q ss_pred cCccCCCCCCCCEEEeeCCCCCcC-----Ccccc-CCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeecc
Q 015983 48 FPEKTSSKDQLLEIHLEGTAIRGL-----PASIE-LLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGC 113 (397)
Q Consensus 48 ~P~~l~~l~~L~~L~Ls~~~i~~l-----P~si~-~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C 113 (397)
++..+..+++|++|+|++|.++.. ...+. ..++|+.|+|++| .+.. +|..+..+++|++|++++|
T Consensus 276 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 276 LCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred HHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC-CCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 344444455666666666655421 11111 2245666666653 3332 3444445555666666554
No 136
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.43 E-value=3e-08 Score=99.40 Aligned_cols=138 Identities=22% Similarity=0.190 Sum_probs=84.0
Q ss_pred CCCcEEeccCCCCCc-----------cCCCcceEEeecCCccccc-hhhh--------hhhccc-----------cccCc
Q 015983 2 KSLKTLVLSGCLKLK-----------KFPDIVQVLWDGTDIRELS-FAIE--------LLFRLV-----------QEFPE 50 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~-----------~lP~~~~L~Ls~n~l~~Lp-~si~--------~L~~L~-----------~~~P~ 50 (397)
++|++|+|++|..-. .+|.+..|+|++|.+.... ..+. .|+.|. ..++.
T Consensus 142 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 221 (461)
T 1z7x_W 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCG 221 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHH
T ss_pred CcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHH
Confidence 368888888884221 2466666888888776432 1221 233222 12455
Q ss_pred cCCCCCCCCEEEeeCCCCCcC-----Cc-cccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeecccCCcc-
Q 015983 51 KTSSKDQLLEIHLEGTAIRGL-----PA-SIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCSKLKN- 118 (397)
Q Consensus 51 ~l~~l~~L~~L~Ls~~~i~~l-----P~-si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~~L~~- 118 (397)
.+..+++|++|+|++|.++.. .. .+..+++|+.|++++| .+.. +|..+..+++|++|++++| .+..
T Consensus 222 ~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~ 299 (461)
T 1z7x_W 222 IVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDE 299 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTC-CCHHH
T ss_pred HHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCC-CCchH
Confidence 556677888888888877642 12 2335778888888884 6665 6666777788888888875 3332
Q ss_pred ----CCccc-CCCCCCcEEECCCCcccc
Q 015983 119 ----APETL-GKVESLESAVETVTKFAK 141 (397)
Q Consensus 119 ----lP~~~-~~L~~L~~L~ls~n~~~~ 141 (397)
+...+ ...++|+.|++++|.++.
T Consensus 300 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~ 327 (461)
T 1z7x_W 300 GARLLCETLLEPGCQLESLWVKSCSFTA 327 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCBG
T ss_pred HHHHHHHHhccCCccceeeEcCCCCCch
Confidence 22211 223567778887777653
No 137
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.29 E-value=2.8e-07 Score=95.22 Aligned_cols=34 Identities=9% Similarity=-0.039 Sum_probs=18.2
Q ss_pred CCCCCCEEEeeCCCCCcCCccccCCCCCCEEEec
Q 015983 54 SKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLK 87 (397)
Q Consensus 54 ~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls 87 (397)
.+++|+.|+|++|.+..+|..+..+++|+.|+++
T Consensus 218 ~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~ 251 (592)
T 3ogk_B 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251 (592)
T ss_dssp HCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEEC
T ss_pred hCCCCcEEeccCccHHHHHHHHhhhhHHHhhccc
Confidence 4455566666555555555445555555555554
No 138
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=98.23 E-value=5.4e-07 Score=93.09 Aligned_cols=113 Identities=14% Similarity=0.013 Sum_probs=56.6
Q ss_pred CCCCcEEeccCCCC-----------CccCCCcceEEeecCCcc-----ccchhhhhhhccc---------cccCccCCCC
Q 015983 1 MKSLKTLVLSGCLK-----------LKKFPDIVQVLWDGTDIR-----ELSFAIELLFRLV---------QEFPEKTSSK 55 (397)
Q Consensus 1 L~sL~~L~LsgC~~-----------L~~lP~~~~L~Ls~n~l~-----~Lp~si~~L~~L~---------~~~P~~l~~l 55 (397)
+++|++|+|++|.. ...+|.+..|+|++|.++ .++..+.++++|+ ..+|..+..+
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~ 242 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA 242 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence 46778888887742 123455555777766664 2333333344443 2244444555
Q ss_pred CCCCEEEeeCCCC----CcCCccccCCCCCCEEEecCCCCCCCCChhccCCCcCceeeeeccc
Q 015983 56 DQLLEIHLEGTAI----RGLPASIELLSGNVLLNLKDRKNLKSLPSTINGLRCLRMLHLSGCS 114 (397)
Q Consensus 56 ~~L~~L~Ls~~~i----~~lP~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~sL~~L~Ls~C~ 114 (397)
++|++|++++... ...+..+..+++|+.|++++ .....+|..+..+++|++|++++|.
T Consensus 243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~-~~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSY-MGPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETT-CCTTTGGGGGGGGGGCCEEEETTCC
T ss_pred hHHHhhcccccccccchHHHHHHhhccccccccCccc-cchhHHHHHHhhcCCCcEEecCCCc
Confidence 5666666653211 12233444555555555554 2334445544455555555555543
No 139
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=98.21 E-value=3.2e-06 Score=81.37 Aligned_cols=85 Identities=14% Similarity=0.170 Sum_probs=71.9
Q ss_pred CCCCCEEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCc-eeeeecccCCccCC-cccCCCCCCc
Q 015983 55 KDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLR-MLHLSGCSKLKNAP-ETLGKVESLE 130 (397)
Q Consensus 55 l~~L~~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~-~L~Ls~C~~L~~lP-~~~~~L~~L~ 130 (397)
+++|+.|+|++|.++.+|.. |..+++|+.|+|.+ + +..++. .+.++.+|+ .|.+.+ .+..++ ..+..+.+|+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~-n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~ 300 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPH-N-LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLR 300 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCT-T-CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTTEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCc-c-cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCccCC
Confidence 67899999999999999865 88999999999987 3 888865 788999999 999987 677776 5788999999
Q ss_pred EEECCCCcccccc
Q 015983 131 SAVETVTKFAKAE 143 (397)
Q Consensus 131 ~L~ls~n~~~~L~ 143 (397)
.+++++|.++.++
T Consensus 301 ~l~l~~n~i~~I~ 313 (329)
T 3sb4_A 301 YVLATGDKITTLG 313 (329)
T ss_dssp EEEECSSCCCEEC
T ss_pred EEEeCCCccCccc
Confidence 9999888776654
No 140
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.13 E-value=4.5e-07 Score=89.58 Aligned_cols=137 Identities=15% Similarity=0.119 Sum_probs=79.9
Q ss_pred CCCcEEeccCCCCCcc------------C-CCcceEEeecCCcccc-----chhhhhhhccc-----------cccCccC
Q 015983 2 KSLKTLVLSGCLKLKK------------F-PDIVQVLWDGTDIREL-----SFAIELLFRLV-----------QEFPEKT 52 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~------------l-P~~~~L~Ls~n~l~~L-----p~si~~L~~L~-----------~~~P~~l 52 (397)
++|+.|+|++|. +.. - +.+..|+|++|.++.. ...+.+|+.|. ..+...+
T Consensus 72 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 72 SSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp TTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred hhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 468888888874 321 1 3444588888877631 11222233222 1111111
Q ss_pred -CCCCCCCEEEeeCCCCCc-----CCccccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeecccCCcc---
Q 015983 53 -SSKDQLLEIHLEGTAIRG-----LPASIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCSKLKN--- 118 (397)
Q Consensus 53 -~~l~~L~~L~Ls~~~i~~-----lP~si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~~L~~--- 118 (397)
...++|++|+|++|.|+. ++..+..+++|+.|+|++ |.+.. ++..+...++|+.|+|++| .+..
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~-N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~ 228 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLH-TGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAA 228 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTT-SSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCC-CCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHH
Confidence 234667888888887763 444556677788888887 34543 3455566677888888875 3432
Q ss_pred --CCcccCCCCCCcEEECCCCcccc
Q 015983 119 --APETLGKVESLESAVETVTKFAK 141 (397)
Q Consensus 119 --lP~~~~~L~~L~~L~ls~n~~~~ 141 (397)
++..+...++|+.|++++|.++.
T Consensus 229 ~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 229 LALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp HHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred HHHHHHHHhCCCCCEEeccCCCCCH
Confidence 33334455677888888887653
No 141
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.09 E-value=1.2e-06 Score=90.38 Aligned_cols=36 Identities=19% Similarity=0.193 Sum_probs=17.6
Q ss_pred CCCCCCEEEeeCCCCCc-----CCccccCCCCCCEEEecCC
Q 015983 54 SKDQLLEIHLEGTAIRG-----LPASIELLSGNVLLNLKDR 89 (397)
Q Consensus 54 ~l~~L~~L~Ls~~~i~~-----lP~si~~L~~L~~L~Ls~c 89 (397)
.+++|++|+|++|.++. ++.....+++|+.|++++|
T Consensus 154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~ 194 (594)
T 2p1m_B 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCL 194 (594)
T ss_dssp HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTC
T ss_pred hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEeccc
Confidence 45556666666555432 2222224445555555554
No 142
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=98.04 E-value=5.3e-07 Score=93.09 Aligned_cols=122 Identities=12% Similarity=0.113 Sum_probs=72.3
Q ss_pred CCCcEEeccCCCCCcc----------------------CCCcceEEeecCCcccc-chhhhhhhccccccCccCCCCCCC
Q 015983 2 KSLKTLVLSGCLKLKK----------------------FPDIVQVLWDGTDIREL-SFAIELLFRLVQEFPEKTSSKDQL 58 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~~----------------------lP~~~~L~Ls~n~l~~L-p~si~~L~~L~~~~P~~l~~l~~L 58 (397)
++|+.|+|++|..+.. +|.+..|+|+++.++.. +..+. ..+++|
T Consensus 66 ~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~-------------~~~~~L 132 (594)
T 2p1m_B 66 PKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIA-------------KSFKNF 132 (594)
T ss_dssp TTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHH-------------HHCTTC
T ss_pred CCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHH-------------HhCCCC
Confidence 5678888888754432 33444477777665521 11111 135678
Q ss_pred CEEEeeCC-CCCc--CCccccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeeccc-CC--ccCCcccCCCC
Q 015983 59 LEIHLEGT-AIRG--LPASIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCS-KL--KNAPETLGKVE 127 (397)
Q Consensus 59 ~~L~Ls~~-~i~~--lP~si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~-~L--~~lP~~~~~L~ 127 (397)
++|+|++| .++. ++..+..+++|+.|+|++|. +.. ++.....+++|+.|++++|. .+ ..++.....++
T Consensus 133 ~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~ 211 (594)
T 2p1m_B 133 KVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCP 211 (594)
T ss_dssp CEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCT
T ss_pred cEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCC
Confidence 88888887 5553 55555678888888888864 332 33333456788888888764 11 11222233456
Q ss_pred CCcEEECCCC
Q 015983 128 SLESAVETVT 137 (397)
Q Consensus 128 ~L~~L~ls~n 137 (397)
+|+.|++++|
T Consensus 212 ~L~~L~L~~~ 221 (594)
T 2p1m_B 212 NLKSLKLNRA 221 (594)
T ss_dssp TCCEEECCTT
T ss_pred CCcEEecCCC
Confidence 7777777766
No 143
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.82 E-value=5.2e-05 Score=72.81 Aligned_cols=100 Identities=16% Similarity=0.219 Sum_probs=82.4
Q ss_pred CCCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCc-cccCCCCCC-EEEecCCCCCCCC
Q 015983 18 FPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPA-SIELLSGNV-LLNLKDRKNLKSL 95 (397)
Q Consensus 18 lP~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~-si~~L~~L~-~L~Ls~c~~l~~L 95 (397)
.+.+..|+|++|.++.+|... +.++.+|+.|+|..| ++.++. .|.++.+|+ .|++.+ .+..+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~a-------------F~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~--~l~~I 288 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFT-------------FAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA--SVTAI 288 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTT-------------TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT--TCCEE
T ss_pred cCCCeEEECCCCCcceecHhh-------------hhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc--cceEE
Confidence 355566888888888888653 467889999999987 888875 488999999 999987 68888
Q ss_pred C-hhccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEEC
Q 015983 96 P-STINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVE 134 (397)
Q Consensus 96 P-~~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~l 134 (397)
+ ..+.++++|+.|++++ +.+..++. .+.++++|+.++.
T Consensus 289 ~~~aF~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 289 EFGAFMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CTTTTTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEEC
T ss_pred chhhhhCCccCCEEEeCC-CccCccchhhhcCCcchhhhcc
Confidence 5 5899999999999988 57888875 6888989988763
No 144
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.81 E-value=3.7e-06 Score=79.34 Aligned_cols=79 Identities=20% Similarity=0.236 Sum_probs=55.5
Q ss_pred CCCCCCCEEEeeCCCCCcCC---ccccCCCCCCEEEecCCCCCCCCChhccCCC--cCceeeeecccCCccCCc------
Q 015983 53 SSKDQLLEIHLEGTAIRGLP---ASIELLSGNVLLNLKDRKNLKSLPSTINGLR--CLRMLHLSGCSKLKNAPE------ 121 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~~i~~lP---~si~~L~~L~~L~Ls~c~~l~~LP~~i~~L~--sL~~L~Ls~C~~L~~lP~------ 121 (397)
.++++|+.|+|++|.|+.++ ..+..+++|+.|+|++ |.+..+.. +..+. +|++|+|++|..-..+|.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~-N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSG-NELKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTT-SCCCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCC-CccCCchh-hhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 35678999999999888654 5667889999999998 67877733 44444 888888888654444542
Q ss_pred -ccCCCCCCcEEE
Q 015983 122 -TLGKVESLESAV 133 (397)
Q Consensus 122 -~~~~L~~L~~L~ 133 (397)
.+..+++|+.|+
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 244556666554
No 145
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.58 E-value=4e-05 Score=67.69 Aligned_cols=83 Identities=11% Similarity=0.110 Sum_probs=61.0
Q ss_pred CCCCEEEeeCCCCCcC-CccccCCCCCCEEEecCCCCCCCCC-hhccCC----CcCceeeeecccCCccCC-cccCCCCC
Q 015983 56 DQLLEIHLEGTAIRGL-PASIELLSGNVLLNLKDRKNLKSLP-STINGL----RCLRMLHLSGCSKLKNAP-ETLGKVES 128 (397)
Q Consensus 56 ~~L~~L~Ls~~~i~~l-P~si~~L~~L~~L~Ls~c~~l~~LP-~~i~~L----~sL~~L~Ls~C~~L~~lP-~~~~~L~~ 128 (397)
-.|+.|||++|.|+.. -..+..+++|+.|+|++|..++.-- ..+..+ ++|++|+|++|..++.-- ..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 3699999999998732 2456789999999999998776421 123333 479999999998775521 23456889
Q ss_pred CcEEECCCCc
Q 015983 129 LESAVETVTK 138 (397)
Q Consensus 129 L~~L~ls~n~ 138 (397)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999999885
No 146
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=97.58 E-value=1.3e-05 Score=79.13 Aligned_cols=113 Identities=17% Similarity=0.165 Sum_probs=75.6
Q ss_pred CCCcEEeccCCCCCc---------cCCCcceEEeecCCccccch-hhh--------hhhccc-----------cccCccC
Q 015983 2 KSLKTLVLSGCLKLK---------KFPDIVQVLWDGTDIRELSF-AIE--------LLFRLV-----------QEFPEKT 52 (397)
Q Consensus 2 ~sL~~L~LsgC~~L~---------~lP~~~~L~Ls~n~l~~Lp~-si~--------~L~~L~-----------~~~P~~l 52 (397)
++|+.|+|++|. +. .++.+..|+|++|.|+.... .+. .|+.|. ..++..+
T Consensus 101 ~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L 179 (372)
T 3un9_A 101 HALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL 179 (372)
T ss_dssp SCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred CCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence 467888888874 32 23344458888887764321 111 122222 2344445
Q ss_pred CCCCCCCEEEeeCCCCCc-----CCccccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeecccCCc
Q 015983 53 SSKDQLLEIHLEGTAIRG-----LPASIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCSKLK 117 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~~i~~-----lP~si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~~L~ 117 (397)
..+++|++|+|++|.|+. ++..+...++|+.|+|++| .+.. ++..+...++|++|+|++| .+.
T Consensus 180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~ 252 (372)
T 3un9_A 180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELS 252 (372)
T ss_dssp HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSS-CCCHHHHHHHHHHHHHCSSCCEEECTTS-SCC
T ss_pred hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCC-CCCHHHHHHHHHHHHhCCCCCEEeccCC-CCC
Confidence 677899999999999973 4566778889999999994 6653 4455566789999999996 443
No 147
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=97.52 E-value=7.9e-05 Score=73.26 Aligned_cols=13 Identities=23% Similarity=0.350 Sum_probs=8.9
Q ss_pred cCCCcceEEeecC
Q 015983 17 KFPDIVQVLWDGT 29 (397)
Q Consensus 17 ~lP~~~~L~Ls~n 29 (397)
.+|.+..|.|+++
T Consensus 170 ~~P~L~~L~L~g~ 182 (362)
T 2ra8_A 170 AMPLLNNLKIKGT 182 (362)
T ss_dssp TCTTCCEEEEECC
T ss_pred cCCCCcEEEEeCC
Confidence 4566666888776
No 148
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.25 E-value=9.3e-05 Score=65.38 Aligned_cols=84 Identities=17% Similarity=0.145 Sum_probs=43.4
Q ss_pred CCCCCCEEEeeCCCCCc-----CCccccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeee--ecccCCcc---
Q 015983 54 SKDQLLEIHLEGTAIRG-----LPASIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHL--SGCSKLKN--- 118 (397)
Q Consensus 54 ~l~~L~~L~Ls~~~i~~-----lP~si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~L--s~C~~L~~--- 118 (397)
..++|++|+|++|.|.. +...+...++|+.|+|++ +.+.. +...+...++|++|+| ++| .++.
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N-~i~~~g~ 140 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVES-NFISGSGILALVEALQSNTSLIELRIDNQSQ-PLGNNVE 140 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCS-SCCCHHHHHHHHHGGGGCSSCCEEECCCCSS-CCCHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcC-CcCCHHHHHHHHHHHHhCCCceEEEecCCCC-CCCHHHH
Confidence 34556666666666652 333344455666666666 34443 3344445556666666 443 3322
Q ss_pred --CCcccCCCCCCcEEECCCCcc
Q 015983 119 --APETLGKVESLESAVETVTKF 139 (397)
Q Consensus 119 --lP~~~~~L~~L~~L~ls~n~~ 139 (397)
+.+.+...+.|+.|++++|.+
T Consensus 141 ~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 141 MEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHHHhCCCcCEEeccCCCC
Confidence 222333445566666666654
No 149
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.19 E-value=0.00018 Score=67.73 Aligned_cols=80 Identities=13% Similarity=0.181 Sum_probs=56.4
Q ss_pred cCCCcceEEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCCCCCcCCccccCCC--CCCEEEecCCCCCC-
Q 015983 17 KFPDIVQVLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGTAIRGLPASIELLS--GNVLLNLKDRKNLK- 93 (397)
Q Consensus 17 ~lP~~~~L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i~~lP~si~~L~--~L~~L~Ls~c~~l~- 93 (397)
.+|.+..|+|++|.|+.++. +|..+..+++|+.|+|++|.|+.+ ..+..+. +|+.|+|++| .+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~-----------l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~N-pl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDD-----------MSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGN-SLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGG-----------GTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTS-TTGG
T ss_pred hCCCCCEEECCCCCCCCCcc-----------chhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCC-cCcc
Confidence 35666668888887776542 222234678899999999999977 3345455 9999999994 554
Q ss_pred CCC-------hhccCCCcCceee
Q 015983 94 SLP-------STINGLRCLRMLH 109 (397)
Q Consensus 94 ~LP-------~~i~~L~sL~~L~ 109 (397)
.+| ..+..+++|+.||
T Consensus 235 ~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 235 TFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GCSSHHHHHHHHHHHCTTCCEES
T ss_pred ccCcchhHHHHHHHHCcccCeEC
Confidence 455 2366788998886
No 150
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=97.19 E-value=0.0023 Score=63.51 Aligned_cols=78 Identities=6% Similarity=0.106 Sum_probs=51.2
Q ss_pred CCCCEEEeeCCCCCcCC-ccccCCCCCCEEEecCCCCCC-----CCC-hhccCCCcCceeeeecccCCccCCc-ccCCCC
Q 015983 56 DQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDRKNLK-----SLP-STINGLRCLRMLHLSGCSKLKNAPE-TLGKVE 127 (397)
Q Consensus 56 ~~L~~L~Ls~~~i~~lP-~si~~L~~L~~L~Ls~c~~l~-----~LP-~~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~ 127 (397)
.+|+.+.| .++++.++ ..|.++++|+.+.+.+ +.+. .++ ..+.++++|+.+.|.+ .+..++. .+..+.
T Consensus 248 ~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~-~~~~~~~~~~I~~~aF~~c~~L~~l~l~~--~i~~I~~~aF~~c~ 323 (401)
T 4fdw_A 248 SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYG-STFNDDPEAMIHPYCLEGCPKLARFEIPE--SIRILGQGLLGGNR 323 (401)
T ss_dssp CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEES-SCCCCCTTCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCC
T ss_pred CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCC-ccccCCcccEECHHHhhCCccCCeEEeCC--ceEEEhhhhhcCCC
Confidence 45666666 34455554 3477788888888876 3333 354 4677788888888874 4666653 567778
Q ss_pred CCcEEECCCC
Q 015983 128 SLESAVETVT 137 (397)
Q Consensus 128 ~L~~L~ls~n 137 (397)
+|+.+.+..+
T Consensus 324 ~L~~l~lp~~ 333 (401)
T 4fdw_A 324 KVTQLTIPAN 333 (401)
T ss_dssp SCCEEEECTT
T ss_pred CccEEEECcc
Confidence 8888877543
No 151
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=97.17 E-value=0.00016 Score=63.90 Aligned_cols=101 Identities=15% Similarity=0.183 Sum_probs=71.6
Q ss_pred CCCcEEeccCCCCC------------ccCCCcceEEeecCCccccch-hhhhhhccccccCccCCCCCCCCEEEeeCCCC
Q 015983 2 KSLKTLVLSGCLKL------------KKFPDIVQVLWDGTDIRELSF-AIELLFRLVQEFPEKTSSKDQLLEIHLEGTAI 68 (397)
Q Consensus 2 ~sL~~L~LsgC~~L------------~~lP~~~~L~Ls~n~l~~Lp~-si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~~i 68 (397)
++|+.|+|++|..+ ...+.+..|+|++|.|..-.. .+. +.+...++|++|+|++|.|
T Consensus 36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~----------~~L~~n~~L~~L~L~~N~i 105 (185)
T 1io0_A 36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALA----------EMLKVNNTLKSLNVESNFI 105 (185)
T ss_dssp TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHH----------HHHHHCSSCCEEECCSSCC
T ss_pred CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHH----------HHHHhCCCcCEEECcCCcC
Confidence 57999999998333 233556669999998874211 111 1112346799999999999
Q ss_pred Cc-----CCccccCCCCCCEEEe--cCCCCCCC-----CChhccCCCcCceeeeecc
Q 015983 69 RG-----LPASIELLSGNVLLNL--KDRKNLKS-----LPSTINGLRCLRMLHLSGC 113 (397)
Q Consensus 69 ~~-----lP~si~~L~~L~~L~L--s~c~~l~~-----LP~~i~~L~sL~~L~Ls~C 113 (397)
.. +...+...++|+.|+| ++ +.+.. +...+...++|++|+|++|
T Consensus 106 ~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n 161 (185)
T 1io0_A 106 SGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFT 161 (185)
T ss_dssp CHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred CHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence 84 5667888889999999 66 56654 4455666689999999986
No 152
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.15 E-value=0.00022 Score=62.94 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=57.8
Q ss_pred EEeecCCccccchhhhhhhccccccCccCCCCCCCCEEEeeCC-CCCcC-CccccCC----CCCCEEEecCCCCCCCC-C
Q 015983 24 VLWDGTDIRELSFAIELLFRLVQEFPEKTSSKDQLLEIHLEGT-AIRGL-PASIELL----SGNVLLNLKDRKNLKSL-P 96 (397)
Q Consensus 24 L~Ls~n~l~~Lp~si~~L~~L~~~~P~~l~~l~~L~~L~Ls~~-~i~~l-P~si~~L----~~L~~L~Ls~c~~l~~L-P 96 (397)
|+|+++.|+.. .+. .+..+++|++|+|++| .|+.- -..+..+ ++|+.|+|++|.+++.- =
T Consensus 66 LDLs~~~Itd~--GL~-----------~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 66 IDATDSCIMSI--GFD-----------HMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp EEEESCCCCGG--GGG-----------GGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred EeCcCCCccHH--HHH-----------HhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 88888776532 111 1357889999999999 57631 1224443 36999999999888752 1
Q ss_pred hhccCCCcCceeeeecccCCcc
Q 015983 97 STINGLRCLRMLHLSGCSKLKN 118 (397)
Q Consensus 97 ~~i~~L~sL~~L~Ls~C~~L~~ 118 (397)
..+.++++|++|+|++|..++.
T Consensus 133 ~~L~~~~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 133 IALHHFRNLKYLFLSDLPGVKE 154 (176)
T ss_dssp HHGGGCTTCCEEEEESCTTCCC
T ss_pred HHHhcCCCCCEEECCCCCCCCc
Confidence 2356789999999999987664
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=96.70 E-value=0.0073 Score=59.82 Aligned_cols=77 Identities=9% Similarity=0.142 Sum_probs=37.3
Q ss_pred CCCCEEEeeCCCCCcCCc-cccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCC-cccCCCCCCcEE
Q 015983 56 DQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESA 132 (397)
Q Consensus 56 ~~L~~L~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L 132 (397)
.+|+.+.|. ++++.++. .|.++.+|+.+.+.. ++..++. .+.+ .+|+.+.+.+ .+..++ ..+..+.+|+.+
T Consensus 203 ~~L~~l~lp-~~l~~I~~~aF~~~~~L~~l~l~~--~l~~I~~~aF~~-~~L~~i~lp~--~i~~I~~~aF~~c~~L~~l 276 (401)
T 4fdw_A 203 AGIEEVLLP-VTLKEIGSQAFLKTSQLKTIEIPE--NVSTIGQEAFRE-SGITTVKLPN--GVTNIASRAFYYCPELAEV 276 (401)
T ss_dssp CCCSEEECC-TTCCEECTTTTTTCTTCCCEECCT--TCCEECTTTTTT-CCCSEEEEET--TCCEECTTTTTTCTTCCEE
T ss_pred cccCEEEeC-CchheehhhHhhCCCCCCEEecCC--CccCcccccccc-CCccEEEeCC--CccEEChhHhhCCCCCCEE
Confidence 344444444 22444442 245555666666654 3444543 3333 5566665532 344443 345555556665
Q ss_pred ECCCCc
Q 015983 133 VETVTK 138 (397)
Q Consensus 133 ~ls~n~ 138 (397)
.+.++.
T Consensus 277 ~l~~~~ 282 (401)
T 4fdw_A 277 TTYGST 282 (401)
T ss_dssp EEESSC
T ss_pred EeCCcc
Confidence 555443
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=96.67 E-value=0.0014 Score=64.27 Aligned_cols=85 Identities=13% Similarity=0.038 Sum_probs=40.1
Q ss_pred CCCCCCCEEEeeCCCCCcCCccccCCCCCCEEEecCCCCCCC-CChhc--cCCCcCceeeeecccC-------CccCCcc
Q 015983 53 SSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDRKNLKS-LPSTI--NGLRCLRMLHLSGCSK-------LKNAPET 122 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~~i~~lP~si~~L~~L~~L~Ls~c~~l~~-LP~~i--~~L~sL~~L~Ls~C~~-------L~~lP~~ 122 (397)
..+++|+.|+|+++.-..++. +. +++|+.|+|..|. +.. .-..+ ..+++|+.|+|+.+.. +..+...
T Consensus 169 ~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~-l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~ 245 (362)
T 2ra8_A 169 DAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGG-LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPL 245 (362)
T ss_dssp HTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSB-CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGG
T ss_pred hcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCC-CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHH
Confidence 345567777776652123433 32 5667777776532 211 00112 2466666666643111 1112111
Q ss_pred c--CCCCCCcEEECCCCccc
Q 015983 123 L--GKVESLESAVETVTKFA 140 (397)
Q Consensus 123 ~--~~L~~L~~L~ls~n~~~ 140 (397)
+ ..+++|+.|++.+|.+.
T Consensus 246 l~~~~~p~Lr~L~L~~~~i~ 265 (362)
T 2ra8_A 246 FSKDRFPNLKWLGIVDAEEQ 265 (362)
T ss_dssp SCTTTCTTCCEEEEESCTTH
T ss_pred HhcCCCCCcCEEeCCCCCCc
Confidence 2 23566666666665543
No 155
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.20 E-value=0.033 Score=46.10 Aligned_cols=50 Identities=26% Similarity=0.432 Sum_probs=22.4
Q ss_pred EEEeeCCCCC--cCCccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeec
Q 015983 60 EIHLEGTAIR--GLPASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSG 112 (397)
Q Consensus 60 ~L~Ls~~~i~--~lP~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~ 112 (397)
.++.+++.++ .+|..+. .+|+.|+|++ |.|..||. .+..+++|+.|+|++
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTG-NNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCS
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCC-CcCCccChhhhhhccccCEEEecC
Confidence 4444555554 5554322 2445555554 44544443 233344444444444
No 156
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=94.85 E-value=0.041 Score=45.54 Aligned_cols=55 Identities=24% Similarity=0.328 Sum_probs=44.5
Q ss_pred CEEEecCCCCCC--CCChhccCCCcCceeeeecccCCccCCc-ccCCCCCCcEEECCCCccc
Q 015983 82 VLLNLKDRKNLK--SLPSTINGLRCLRMLHLSGCSKLKNAPE-TLGKVESLESAVETVTKFA 140 (397)
Q Consensus 82 ~~L~Ls~c~~l~--~LP~~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L~~L~ls~n~~~ 140 (397)
..++.++ +.++ .+|..+ ..+|+.|+|++ +.+..||. .+..+++|+.|++++|.+.
T Consensus 11 ~~v~Cs~-~~L~~~~vP~~l--p~~l~~L~Ls~-N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGR-RGLTWASLPTAF--PVDTTELVLTG-NNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCS-SCCCTTTSCSCC--CTTCSEEECTT-SCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCC-CCCccccCCCCC--CcCCCEEECCC-CcCCccChhhhhhccccCEEEecCCCee
Confidence 4678887 7888 899754 36899999999 68888875 4678899999999999753
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.96 E-value=0.64 Score=45.09 Aligned_cols=54 Identities=15% Similarity=0.074 Sum_probs=22.4
Q ss_pred CCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCC-cccCCCCCCcEEEC
Q 015983 77 LLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAP-ETLGKVESLESAVE 134 (397)
Q Consensus 77 ~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~L~~L~l 134 (397)
.+.+|+.+.+.. .+..++. .+.++.+|+.+++.. .++.|+ ..+.++.+|+.+.+
T Consensus 295 ~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~l 350 (394)
T 4fs7_A 295 GCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINF 350 (394)
T ss_dssp TCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECC
T ss_pred cccccccccccc--ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEE
Confidence 344444444432 2344432 344444444444432 233332 23444444444444
No 158
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.34 E-value=0.37 Score=46.77 Aligned_cols=79 Identities=13% Similarity=0.147 Sum_probs=53.9
Q ss_pred CCCCCCCEEEeeCCCCCcCCc-cccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCC
Q 015983 53 SSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESL 129 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L 129 (397)
..+.+|+.+.+.. .++.++. .+.++.+|+.++|.. .+..++. ++.++.+|+.+.+.. .+..++. .+.++.+|
T Consensus 294 ~~~~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~--~l~~I~~~aF~~C~~L 368 (394)
T 4fs7_A 294 YGCSSLTEVKLLD-SVKFIGEEAFESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPL--SLRKIGANAFQGCINL 368 (394)
T ss_dssp TTCTTCCEEEECT-TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCT--TCCEECTTTBTTCTTC
T ss_pred ccccccccccccc-ccceechhhhcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECc--cccEehHHHhhCCCCC
Confidence 4566777777754 3666654 467778888888864 4666743 677778888888765 3666653 57777788
Q ss_pred cEEECCC
Q 015983 130 ESAVETV 136 (397)
Q Consensus 130 ~~L~ls~ 136 (397)
+.+.+..
T Consensus 369 ~~i~lp~ 375 (394)
T 4fs7_A 369 KKVELPK 375 (394)
T ss_dssp CEEEEEG
T ss_pred CEEEECC
Confidence 8777654
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=91.26 E-value=0.52 Score=45.72 Aligned_cols=79 Identities=11% Similarity=0.181 Sum_probs=43.0
Q ss_pred CCCCCCCCEEEeeCCCCCcCC-ccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCC
Q 015983 52 TSSKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVES 128 (397)
Q Consensus 52 l~~l~~L~~L~Ls~~~i~~lP-~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~ 128 (397)
+..+.+|+.+.+..+. ..+. ..+.++.+|+.+.+.. .+..++. .+.++.+|+.+.|.. .++.|.. .+..+.+
T Consensus 261 F~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 261 FDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFSS--RITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTT
T ss_pred eeecccccEEeccccc-ceecCcccccccccccccCCC--cccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCC
Confidence 4455667777665432 2232 2355566666666652 4555544 455566666666653 3455542 4555666
Q ss_pred CcEEECC
Q 015983 129 LESAVET 135 (397)
Q Consensus 129 L~~L~ls 135 (397)
|+.+.+.
T Consensus 336 L~~i~ip 342 (394)
T 4gt6_A 336 LERIAIP 342 (394)
T ss_dssp CCEEEEC
T ss_pred CCEEEEC
Confidence 6666554
No 160
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.25 E-value=0.64 Score=45.09 Aligned_cols=81 Identities=14% Similarity=0.249 Sum_probs=56.0
Q ss_pred CCCCCCCEEEeeCCCCCcCCcc-ccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCCC
Q 015983 53 SSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVESL 129 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~~i~~lP~s-i~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~L 129 (397)
.++.+|+.+.+. +.++.++.. |.++.+|+.+.|.. .++.+.. .+.++.+|+.+.+.. .+..++. .+.++.+|
T Consensus 285 ~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L 359 (394)
T 4gt6_A 285 MNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPS--SVTKIPESAFSNCTAL 359 (394)
T ss_dssp TTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECT--TCCBCCGGGGTTCTTC
T ss_pred ccccccccccCC-CcccccCceeecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECc--ccCEEhHhHhhCCCCC
Confidence 456677777774 456666643 66778888888864 4666644 677778888888854 4666653 57778888
Q ss_pred cEEECCCCc
Q 015983 130 ESAVETVTK 138 (397)
Q Consensus 130 ~~L~ls~n~ 138 (397)
+.+.+.++.
T Consensus 360 ~~i~~~~~~ 368 (394)
T 4gt6_A 360 NNIEYSGSR 368 (394)
T ss_dssp CEEEESSCH
T ss_pred CEEEECCce
Confidence 888777653
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=87.78 E-value=1 Score=43.07 Aligned_cols=82 Identities=15% Similarity=0.163 Sum_probs=61.2
Q ss_pred CCCCCCCCEEEeeCCCCCcCCc-cccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCC-cccCCCCC
Q 015983 52 TSSKDQLLEIHLEGTAIRGLPA-SIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAP-ETLGKVES 128 (397)
Q Consensus 52 l~~l~~L~~L~Ls~~~i~~lP~-si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP-~~~~~L~~ 128 (397)
+..+..|+.+.+..+ ++.+.. .+.++.+|+.+.+.. .+..++. .+.++.+|+.+.+.+ +.++.|+ ..+.++.+
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~L~~i~l~~-~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSNLTKVVMDN-SAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTTCCEEEECC-TTCCEECTTTTTTCTT
T ss_pred ccCCccceEEEcCCC-ccEeCccccceeehhccccccc--cceeccccccccccccccccccc-cccceehhhhhcCCCC
Confidence 455678888888754 666654 467788899999874 5777765 677889999999976 4677776 46778888
Q ss_pred CcEEECCCC
Q 015983 129 LESAVETVT 137 (397)
Q Consensus 129 L~~L~ls~n 137 (397)
|+.+.+..+
T Consensus 312 L~~i~lp~~ 320 (379)
T 4h09_A 312 LSSVTLPTA 320 (379)
T ss_dssp CCEEECCTT
T ss_pred CCEEEcCcc
Confidence 998888643
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=85.78 E-value=0.88 Score=40.39 Aligned_cols=83 Identities=20% Similarity=0.153 Sum_probs=48.4
Q ss_pred CCCCCEEEeeCCCCC-----cCCccccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeeccc--CCcc----
Q 015983 55 KDQLLEIHLEGTAIR-----GLPASIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCS--KLKN---- 118 (397)
Q Consensus 55 l~~L~~L~Ls~~~i~-----~lP~si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~--~L~~---- 118 (397)
-+.|+.|+|++|.|. .+-..+..=+.|+.|+|+. |.+.. |-..+..=+.|+.|+|++|. .++.
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~-N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~ 147 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVES-NFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEM 147 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCS-SBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCC-CcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHH
Confidence 356888888888876 2333455556788888887 45543 22333444668888887642 2221
Q ss_pred -CCcccCCCCCCcEEECCCCc
Q 015983 119 -APETLGKVESLESAVETVTK 138 (397)
Q Consensus 119 -lP~~~~~L~~L~~L~ls~n~ 138 (397)
+-+.+..=+.|..|+++.+.
T Consensus 148 ~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 148 DMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHhCCCcCeEeccCCC
Confidence 22223333567777776654
No 163
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=84.28 E-value=3.2 Score=39.60 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=62.8
Q ss_pred CCCCCCCCEEEeeCCCCCcCC-ccccCCCCCCEEEecCCCCCCCCCh-hccCCCcCceeeeecccCCccCCc-ccCCCCC
Q 015983 52 TSSKDQLLEIHLEGTAIRGLP-ASIELLSGNVLLNLKDRKNLKSLPS-TINGLRCLRMLHLSGCSKLKNAPE-TLGKVES 128 (397)
Q Consensus 52 l~~l~~L~~L~Ls~~~i~~lP-~si~~L~~L~~L~Ls~c~~l~~LP~-~i~~L~sL~~L~Ls~C~~L~~lP~-~~~~L~~ 128 (397)
+....+|+.+.+..+ ++.++ ..+..+..|+.+.+.. .+..+.. .+.++.+|+.+.+.. .+..++. .+..+.+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~--~v~~I~~~aF~~~~~l~~i~l~~--~i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPK--NVTSIGSFLLQNCTALKTLNFYA--KVKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECT--TCCEECTTTTTTCTTCCEEEECC--CCSEECTTTTTTCTT
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCC--CccEeCccccceeehhccccccc--cceeccccccccccc
Confidence 345667888877543 55554 3467788999999975 4777754 677788999999865 5777764 5778899
Q ss_pred CcEEECCCCcccccc
Q 015983 129 LESAVETVTKFAKAE 143 (397)
Q Consensus 129 L~~L~ls~n~~~~L~ 143 (397)
|+.+.+.++.++.++
T Consensus 288 L~~i~l~~~~i~~I~ 302 (379)
T 4h09_A 288 LTKVVMDNSAIETLE 302 (379)
T ss_dssp CCEEEECCTTCCEEC
T ss_pred cccccccccccceeh
Confidence 999998877665543
No 164
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=77.87 E-value=1.1 Score=39.85 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=56.7
Q ss_pred CCCCCCCEEEeeCC-CCC-----cCCccccCCCCCCEEEecCCCCCCC-----CChhccCCCcCceeeeecccCCcc---
Q 015983 53 SSKDQLLEIHLEGT-AIR-----GLPASIELLSGNVLLNLKDRKNLKS-----LPSTINGLRCLRMLHLSGCSKLKN--- 118 (397)
Q Consensus 53 ~~l~~L~~L~Ls~~-~i~-----~lP~si~~L~~L~~L~Ls~c~~l~~-----LP~~i~~L~sL~~L~Ls~C~~L~~--- 118 (397)
.+-+.|++|+|+++ .|. .+-..+..-+.|+.|+|++ +.+.. |-..+..=+.|+.|+|++| .++.
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N-~Ig~~Ga 115 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESN-FLTPELL 115 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSS-BCCHHHH
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCC-cCCHHHH
Confidence 44567999999985 775 2344566667899999998 45642 3344444578999999985 4432
Q ss_pred --CCcccCCCCCCcEEECCCC
Q 015983 119 --APETLGKVESLESAVETVT 137 (397)
Q Consensus 119 --lP~~~~~L~~L~~L~ls~n 137 (397)
+-+.+..=+.|+.|++++|
T Consensus 116 ~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 116 ARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHhhCCceeEEECCCC
Confidence 3334444566899999865
Done!