BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 015984
         (397 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1UFM|A Chain A, Solution Structure Of The Pci Domain
          Length = 84

 Score = 96.7 bits (239), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/64 (70%), Positives = 53/64 (82%)

Query: 298 VLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357
           +LDRA+IEHNLLSASKLY NI+FEELG LL I   KAEKIAS+MI E RM G IDQ++ +
Sbjct: 11  ILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGI 70

Query: 358 IHFE 361
           +HFE
Sbjct: 71  VHFE 74


>pdb|2PZK|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
           Wbmg In Complex With Nad
 pdb|2PZK|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
           Wbmg In Complex With Nad
 pdb|2PZL|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
           Wbmg In Complex With Nad And Udp
 pdb|2PZL|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
           Wbmg In Complex With Nad And Udp
 pdb|2PZM|A Chain A, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
           Wbmg In Complex With Nad And Udp
 pdb|2PZM|B Chain B, Crystal Structure Of The Bordetella Bronchiseptica Enzyme
           Wbmg In Complex With Nad And Udp
          Length = 330

 Score = 34.7 bits (78), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 133 DTFRLSKCVQIARLYLEDDD-----AVNAEAFINKASFLVSSSQQEVLNLQYKVCYAR 185
           D+F+ +  V  A  Y + DD     A N +  IN A     +  + +LN Q  +CY R
Sbjct: 85  DSFKPTHVVHSAAAYKDPDDWAEDAATNVQGSINVAKAASKAGVKRLLNFQTALCYGR 142


>pdb|1X5T|A Chain A, Solution Structure Of The Second Rrm Domain In Splicing
           Factor  3b
          Length = 96

 Score = 28.1 bits (61), Expect = 7.8,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 119 LSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAE--AFINKASFLVSSSQQEVLN 176
           +  +D +   +++ DTF     +      + D D  N++  AFIN ASF  S +  E +N
Sbjct: 10  IGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMN 69

Query: 177 LQY 179
            QY
Sbjct: 70  GQY 72


>pdb|4E51|A Chain A, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
           Burkholderia Thailandensis Bound To Histidine
 pdb|4E51|B Chain B, Crystal Structure Of A Histidyl-Trna Synthetase Hisrs From
           Burkholderia Thailandensis Bound To Histidine
          Length = 467

 Score = 28.1 bits (61), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 36/71 (50%), Gaps = 3/71 (4%)

Query: 241 RSRVLATLYKDERCSKLKIYPILQKVYLE--RILRKPEIDAFAEELKPHQKALLPDNFTV 298
           +S + A  Y++ R   ++  P+  +   E   I+ K E+ +F + L      L P+N   
Sbjct: 57  KSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEK-EMYSFVDALNGENLTLRPENTAA 115

Query: 299 LDRAMIEHNLL 309
           + RA IEHN+L
Sbjct: 116 VVRAAIEHNML 126


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.318    0.133    0.361 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,945,353
Number of Sequences: 62578
Number of extensions: 370702
Number of successful extensions: 985
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 983
Number of HSP's gapped (non-prelim): 10
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)