BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015984
(397 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8L5U0|CSN4_ARATH COP9 signalosome complex subunit 4 OS=Arabidopsis thaliana GN=CSN4
PE=1 SV=2
Length = 397
Score = 704 bits (1818), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/397 (85%), Positives = 369/397 (92%)
Query: 1 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQT 60
M+ AL +ASAI DQRQKIEQYK ILSSV+SSND++QA++FIDH+LSDDVPLVVSRQLLQ+
Sbjct: 1 MDEALTNASAIGDQRQKIEQYKLILSSVLSSNDLLQAQRFIDHILSDDVPLVVSRQLLQS 60
Query: 61 FAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLS 120
FAQELGRLEPETQKEIA +TL QIQPRVVSFEEQ L+IREKLA LYESEQ+WSKAAQMLS
Sbjct: 61 FAQELGRLEPETQKEIAQFTLTQIQPRVVSFEEQALVIREKLAGLYESEQEWSKAAQMLS 120
Query: 121 GIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180
GIDLDSGMR +DD F+LSKC+QIARLYLEDDDAVNAEAFINKASFLVS+SQ EVLNLQYK
Sbjct: 121 GIDLDSGMRAVDDNFKLSKCIQIARLYLEDDDAVNAEAFINKASFLVSNSQNEVLNLQYK 180
Query: 181 VCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQ 240
VCYARILD+KRKFLEAALRYY ISQI++RQIGDE IDE ALEQALSAAVTCTILA AGPQ
Sbjct: 181 VCYARILDMKRKFLEAALRYYGISQIEQRQIGDEEIDENALEQALSAAVTCTILAGAGPQ 240
Query: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLD 300
RSRVLATLYKDERCSKLKIYPILQKVYLERILR+PEIDAF+EEL+PHQKA LPD TVLD
Sbjct: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRRPEIDAFSEELRPHQKASLPDKSTVLD 300
Query: 301 RAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360
RAMIEHNLLSASKLYTNI F+ELGTLL I P+KAEKIA+ MI +DRMRGSIDQ EAVIHF
Sbjct: 301 RAMIEHNLLSASKLYTNIRFDELGTLLAIDPRKAEKIAANMIGQDRMRGSIDQEEAVIHF 360
Query: 361 EDDTEELQQWDQQIVGLCQALNDILDSMAKKGLPIPV 397
EDD EELQQWDQQI GLCQALNDILD MAKKG+ +PV
Sbjct: 361 EDDVEELQQWDQQISGLCQALNDILDGMAKKGMSVPV 397
>sp|Q54B82|CSN4_DICDI COP9 signalosome complex subunit 4 OS=Dictyostelium discoideum
GN=csn4 PE=2 SV=1
Length = 393
Score = 372 bits (956), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/390 (48%), Positives = 268/390 (68%), Gaps = 8/390 (2%)
Query: 1 MESALASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQT 60
++ L SA++D + K E+YK IL ++ S + K FI H+ + PLV+SR +L +
Sbjct: 6 LKQILEETSALSDHKTKTEKYKSILQQLVESKQVAPLKVFITHLTDESTPLVISRTILLS 65
Query: 61 FAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLS 120
F L + Q E+ + L +IQ RVV+FEEQV IR LA LYE ++ W ++A+ L
Sbjct: 66 FTSSHKTLPEDIQMELGIFVLDRIQNRVVAFEEQVSEIRYNLAKLYERQENWRESARCLI 125
Query: 121 GIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180
I LDS RVI +++ V+IARL+LE++++ AE +IN+AS + + + L L +K
Sbjct: 126 AIPLDSSQRVISPEYKVKIYVKIARLFLEEEESGQAETYINRASDSLHLVKNQKLILAHK 185
Query: 181 VCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQ 240
C+ARI+D KR FL+A+LRYYD+SQ + D E + ALS A+ C IL AGPQ
Sbjct: 186 TCFARIMDYKRMFLKASLRYYDLSQCLPK-------DTERM-HALSCAIVCAILDKAGPQ 237
Query: 241 RSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLD 300
RSR LATLYKDER +L +Y L+K++LERIL+K E+ FAE+LKPHQ ALL D TVLD
Sbjct: 238 RSRTLATLYKDERSQQLGVYTFLEKMFLERILKKTEVKKFAEQLKPHQMALLSDGNTVLD 297
Query: 301 RAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360
RA+IEHNLLSASKLY NI+F+ELG+LL I +KAEK+AS+M+ E+R+ GSIDQ+E +I F
Sbjct: 298 RAVIEHNLLSASKLYNNITFDELGSLLEIQAEKAEKVASKMVCEERLIGSIDQIERLIQF 357
Query: 361 EDDTEELQQWDQQIVGLCQALNDILDSMAK 390
E+ + L QWD++I GLC +N+I++S++K
Sbjct: 358 ENVGDSLTQWDKKIEGLCIHMNNIIESISK 387
>sp|Q3SZA0|CSN4_BOVIN COP9 signalosome complex subunit 4 OS=Bos taurus GN=COPS4 PE=2 SV=1
Length = 406
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/374 (52%), Positives = 262/374 (70%), Gaps = 11/374 (2%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVESMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVG 376
NI+FEELG LL I KAEKIAS+MI E RM G IDQ++ ++HFE E L WD+QI
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQS 376
Query: 377 LCQALNDILDSMAK 390
LC +N++L+ +++
Sbjct: 377 LCFQVNNLLEKISQ 390
>sp|Q68FS2|CSN4_RAT COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4
PE=2 SV=1
Length = 406
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 193/374 (51%), Positives = 263/374 (70%), Gaps = 11/374 (2%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KE+
Sbjct: 25 KYRQILEKAIQLSGTEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEV 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL ++QPRV+SFEEQV IR++LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKVQPRVISFEEQVASIRQRLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVG 376
NI+FEELG LL I KAEKIAS+MI E RM G IDQ++ ++HFE E L WD+QI
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQS 376
Query: 377 LCQALNDILDSMAK 390
LC +N++L+ +++
Sbjct: 377 LCFQVNNLLEKISQ 390
>sp|A7Y521|CSN4_PIG COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2 SV=1
Length = 406
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/374 (52%), Positives = 262/374 (70%), Gaps = 11/374 (2%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVG 376
NI+FEELG LL I KAEKIAS+MI E RM G IDQ++ ++HFE E L WD+QI
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQS 376
Query: 377 LCQALNDILDSMAK 390
LC +N++L+ +++
Sbjct: 377 LCFQVNNLLEKISQ 390
>sp|Q4R5E6|CSN4_MACFA COP9 signalosome complex subunit 4 OS=Macaca fascicularis GN=COPS4
PE=2 SV=1
Length = 406
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/374 (52%), Positives = 262/374 (70%), Gaps = 11/374 (2%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVG 376
NI+FEELG LL I KAEKIAS+MI E RM G IDQ++ ++HFE E L WD+QI
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQS 376
Query: 377 LCQALNDILDSMAK 390
LC +N++L+ +++
Sbjct: 377 LCFQVNNLLEKISQ 390
>sp|Q9BT78|CSN4_HUMAN COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1
SV=1
Length = 406
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 195/374 (52%), Positives = 262/374 (70%), Gaps = 11/374 (2%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVG 376
NI+FEELG LL I KAEKIAS+MI E RM G IDQ++ ++HFE E L WD+QI
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQS 376
Query: 377 LCQALNDILDSMAK 390
LC +N++L+ +++
Sbjct: 377 LCFQVNNLLEKISQ 390
>sp|O88544|CSN4_MOUSE COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1
SV=1
Length = 406
Score = 368 bits (945), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/374 (51%), Positives = 262/374 (70%), Gaps = 11/374 (2%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KE+
Sbjct: 25 KYRQILEKAIQLSGTEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEV 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASIRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVG 376
NI+FEELG LL I KAEKIAS+MI E RM G IDQ++ ++HFE E L WD+QI
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQS 376
Query: 377 LCQALNDILDSMAK 390
LC +N++L+ +++
Sbjct: 377 LCFQVNNLLEKISQ 390
>sp|Q5R648|CSN4_PONAB COP9 signalosome complex subunit 4 OS=Pongo abelii GN=COPS4 PE=2
SV=1
Length = 406
Score = 368 bits (944), Expect = e-101, Method: Compositional matrix adjust.
Identities = 194/374 (51%), Positives = 262/374 (70%), Gaps = 11/374 (2%)
Query: 20 QYKHILSSVI--SSNDIVQA-KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL I S + ++A K F++ M++++V LV+SRQLL F L L T KEI
Sbjct: 25 KYRQILEKAIQLSGAEQLEALKAFVEAMVNENVSLVISRQLLTDFCTHLPNLPDSTAKEI 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV +R+ LA +YE E+ W AAQ+L GI L++G + + ++
Sbjct: 85 YHFTLEKIQPRVISFEEQVASVRQHLASIYEKEEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LETYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I E+ EAL+ AL CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELS---YKTIVHESERLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVG 376
NI+FEELG LL I KAEKIAS+MI E RM G IDQ++ ++HFE E L WD+QI
Sbjct: 318 NITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFE-TREALPTWDKQIQS 376
Query: 377 LCQALNDILDSMAK 390
LC +N++L+ +++
Sbjct: 377 LCFQVNNLLEKISQ 390
>sp|Q6P0H6|CSN4_DANRE COP9 signalosome complex subunit 4 OS=Danio rerio GN=cops4 PE=2
SV=1
Length = 406
Score = 367 bits (942), Expect = e-101, Method: Compositional matrix adjust.
Identities = 192/374 (51%), Positives = 259/374 (69%), Gaps = 11/374 (2%)
Query: 20 QYKHILSSVISSNDIVQA---KKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEI 76
+Y+ IL + D Q K F++ M++++V LV+SRQLL F L L + K +
Sbjct: 25 KYRQILEKALQFTDAEQLEALKAFVEAMVNENVSLVISRQLLTDFCAHLPNLPDDIAKVV 84
Query: 77 ANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136
++TL +IQPRV+SFEEQV IR+ LA +YE ++ W AAQ+L GI L++G + + ++
Sbjct: 85 CHFTLEKIQPRVISFEEQVASIRQHLATIYEKQEDWRNAAQVLVGIPLETGQKQYNVDYK 144
Query: 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEA 196
L ++IARLYLEDDD V AEA+IN+AS L + S E L + YKVCYAR+LD +RKF+EA
Sbjct: 145 LDTYLKIARLYLEDDDPVQAEAYINRASLLQNESTNEQLQIHYKVCYARVLDYRRKFIEA 204
Query: 197 ALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSK 256
A RY ++S + I ET EAL+ AL CTILA+AG QRSR+LATL+KDERC +
Sbjct: 205 AQRYNELS---YKSIVHETERLEALKHALH----CTILASAGQQRSRMLATLFKDERCQQ 257
Query: 257 LKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYT 316
L Y IL+K+YL+RI+R ++ FA L PHQKA D ++LDRA+IEHNLLSASKLY
Sbjct: 258 LAAYGILEKMYLDRIIRGNQLQEFAAMLMPHQKATTADGSSILDRAVIEHNLLSASKLYN 317
Query: 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVG 376
NI+FEELG LL I P KAEKIAS+MI E RM G IDQ++ ++HFE E L WD+QI
Sbjct: 318 NITFEELGALLEIPPAKAEKIASQMITEGRMNGFIDQIDGIVHFE-TREPLPTWDKQIQS 376
Query: 377 LCQALNDILDSMAK 390
LC +N++L+ +++
Sbjct: 377 LCFQVNNLLEKISQ 390
>sp|Q9V345|CSN4_DROME COP9 signalosome complex subunit 4 OS=Drosophila melanogaster
GN=CSN4 PE=1 SV=1
Length = 407
Score = 349 bits (895), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 182/379 (48%), Positives = 259/379 (68%), Gaps = 11/379 (2%)
Query: 14 QRQKIEQYKHILSSVISSND---IVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEP 70
+ + ++Y+ +L +V+++ I + F++ ++++ V LV+SRQ+L EL +L
Sbjct: 26 HKDQADKYRQLLKTVLTNTGQELIDGLRLFVEAIVNEHVSLVISRQILNDVGSELSKLPD 85
Query: 71 ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV 130
+ K ++++TL ++ PRV+SFEEQV IR LA++YE QQW AA +L GI L++G +
Sbjct: 86 DLSKMLSHFTLEKVNPRVISFEEQVAGIRFHLANIYERNQQWRDAATVLVGIPLETGQKQ 145
Query: 131 IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLK 190
+L ++IARLYLED+D+V AE FIN+AS L + + E L + YKVCYAR+LD +
Sbjct: 146 YSVECKLGTYLKIARLYLEDNDSVQAELFINRASLLQAETNSEELQVLYKVCYARVLDYR 205
Query: 191 RKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK 250
RKF+EAA RY ++S R+I +D+ AL A+ CT+LA+AG QRSR+LATL+K
Sbjct: 206 RKFIEAAQRYNELSY---RKI----VDQGERMTALKKALICTVLASAGQQRSRMLATLFK 258
Query: 251 DERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLS 310
DERC L Y IL+K+YLERI+R+ E+ F L+ HQKA D ++LDRA+ EHNLLS
Sbjct: 259 DERCQHLPAYGILEKMYLERIIRRSELQEFEALLQDHQKAATSDGSSILDRAVFEHNLLS 318
Query: 311 ASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQW 370
ASKLY NI+FEELG LL I KAEKIAS+MI E RM G IDQ+ A++HFE + E L QW
Sbjct: 319 ASKLYNNITFEELGALLDIPAVKAEKIASQMITEGRMNGHIDQISAIVHFE-NRELLPQW 377
Query: 371 DQQIVGLCQALNDILDSMA 389
D+QI LC +N I++ ++
Sbjct: 378 DRQIQSLCYQVNSIIEKIS 396
>sp|Q9C467|CSN4_EMENI COP9 signalosome complex subunit 4 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnD PE=1 SV=2
Length = 408
Score = 278 bits (710), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 160/406 (39%), Positives = 253/406 (62%), Gaps = 22/406 (5%)
Query: 3 SALASASAITDQRQKIEQYKHILSSVISSNDIVQAKK----FIDHMLSDDVPLVVSRQLL 58
SALA + + K++ Y +LS +S++ Q ++D +LS+D+ +V +R +L
Sbjct: 8 SALAEIESSASPQNKLQLYNDLLSETVSASPEPQLADDLIYYLDSVLSEDLSIVAARPIL 67
Query: 59 QTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQM 118
+F L +L ETQ ++A + + +Q R S EEQ IRE LAD YE+E+++ AA+
Sbjct: 68 DSFIYTLRKLSSETQIKVAQHAVNLLQSRSASVEEQDAQIREILADAYEAEEEYIAAARA 127
Query: 119 LSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178
L GI +DS R++ D+ ++ ++I RLYLE+DD +AEAF+N+ L S + L L
Sbjct: 128 LQGIHIDSSQRLVSDSAKVKLWIRIVRLYLEEDDTTSAEAFLNRIKNLPSKIEDHELKLH 187
Query: 179 YKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAG 238
+++ ARI D +R+FL+A+ Y+ +S +DE QAL+AA+ C +LA AG
Sbjct: 188 FRLSQARIQDARRRFLDASQEYFAVSLAAG-------VDESDRLQALAAAIRCAVLAPAG 240
Query: 239 PQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTV 298
PQRSR LATLYKD+R + ++ + IL+K++L+R+L E+ AFA+ L PHQ A D TV
Sbjct: 241 PQRSRTLATLYKDDRATSVEEFGILEKMFLDRLLTPEEVSAFAQRLAPHQLAQTADGTTV 300
Query: 299 LDRAMIEHNLLSASKLYTNISFEELGTLLGI-------APQKAEKIASRMIFEDRMRGSI 351
LD+A++EHNL++ASKLY NI + LG +LG+ A +KAE A+RM+ + R+ GSI
Sbjct: 301 LDKAVVEHNLVAASKLYENIKTDALGAILGLQASGDLTAGEKAEAYAARMVEQGRLSGSI 360
Query: 352 DQVEAVIHFEDDT----EELQQWDQQIVGLCQALNDILDSMAKKGL 393
DQ++ +I+FE +T ++QWD + GL + + + ++A+ L
Sbjct: 361 DQIDGIIYFESNTTATGRHIRQWDAGVQGLSEGVERVATNIAEGHL 406
>sp|Q7S0P8|CSN4_NEUCR COP9 signalosome complex subunit 4 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-4 PE=1 SV=1
Length = 440
Score = 227 bits (578), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 122/277 (44%), Positives = 176/277 (63%), Gaps = 10/277 (3%)
Query: 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDD 151
++ I E LA +ES+ ++ AA+ L+ I LDS R + D ++ ++I R YLEDD
Sbjct: 117 DQTATIYEELLAAAHESQNSFTDAAKTLAAIPLDSSQRRVTDKYKADLWIRIIRNYLEDD 176
Query: 152 DAVNAEAFINKASFLVS--SSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKR 209
DA +AE ++NK ++ + VLNL +K+ ARI D R+FL A+ YY+IS
Sbjct: 177 DATSAETYLNKLKNIIHNVADDNPVLNLHFKLSAARIQDSNRQFLAASQSYYEISL---- 232
Query: 210 QIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLE 269
I EE LS A+ C +LA AGP RSRVLA LYKDER + L+ + IL+K++L+
Sbjct: 233 ---SPAIAEEERLHTLSMAIKCAVLAPAGPPRSRVLARLYKDERSASLEEFGILEKMFLD 289
Query: 270 RILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGI 329
R+L + E++ FA+ L PHQ A D TVL +AM+EHNLL+ S+LY NI F+ LG+ LG+
Sbjct: 290 RLLARAEVEKFAQGLAPHQLATTSDGSTVLAKAMVEHNLLAVSRLYRNIGFDALGSWLGL 349
Query: 330 -APQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTE 365
+ KAE+I +RMI + R+ GSIDQ++ +I+FE E
Sbjct: 350 DSGNKAEEITARMIEQGRLAGSIDQIDRIIYFESGLE 386
>sp|Q9N359|CSN4_CAEEL COP9 signalosome complex subunit 4 OS=Caenorhabditis elegans
GN=csn-4 PE=1 SV=1
Length = 412
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 214/389 (55%), Gaps = 23/389 (5%)
Query: 12 TDQRQKIEQYKHILSSVISSN-----DIVQAKKFIDHMLS-DDVPLVVSRQLLQTFAQEL 65
TD + + E + + + N D + K ID +++ + +VVSRQ + + L
Sbjct: 19 TDHKAQYEALAKLCNKYLPQNAMGRVDTAEIIKIIDTVIALETGSMVVSRQFVSLITERL 78
Query: 66 G--RLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGID 123
LE E K I+ LA I+ R +S+E+QV I+R LA LYE E + AAQ L I+
Sbjct: 79 DNQHLESECVKAISEGILAIIKTRTISYEDQVCILRLMLASLYEKEGRIKDAAQALIAIN 138
Query: 124 LDS-----GMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL-VSSSQQEVLNL 177
D+ G + + + C++I +L L+ + AE ++N+ S L V + +
Sbjct: 139 SDTSPKFNGPQAAKEGAKAQLCIRITKLLLDCSEIDEAEQYVNRTSILMVDLGANPDIQI 198
Query: 178 QYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAA 237
++K AR+ D KR+F+EAA RYY++S ++ D+ AL A+ C +LA
Sbjct: 199 EHKALQARVSDAKRRFVEAAQRYYELSATEQLPNSDKLT-------ALGKAIVCVLLAKP 251
Query: 238 GPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFT 297
GPQRSR+L ++KDER K + ++ K+YL +++ K E++ F +L+ HQKA +
Sbjct: 252 GPQRSRLLTLIFKDERAPKCASFELIAKMYLTKVIHKDELEEFEHQLQDHQKA-DEHGES 310
Query: 298 VLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357
+L + EHN+ + S+LY NISF+ LG LLG+ + AE +A MI +R+ G IDQ +
Sbjct: 311 ILKGVIQEHNITAISQLYINISFKTLGQLLGVDTEAAESMAGEMISSERLHGYIDQTNGI 370
Query: 358 IHFEDDTEELQQWDQQIVGLCQALNDILD 386
+HFE D+ ++ WD QI+ + +N + D
Sbjct: 371 LHFE-DSNPMRVWDSQILSTLEQINKVSD 398
>sp|O13895|CSN4_SCHPO COP9 signalosome complex subunit 4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn4 PE=1 SV=1
Length = 377
Score = 65.1 bits (157), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 88/360 (24%), Positives = 159/360 (44%), Gaps = 34/360 (9%)
Query: 6 ASASAITDQRQKIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQEL 65
A A T++++ EQ K L+ SN+ + + +L DV + +S
Sbjct: 21 ALALHYTNEKELFEQAKRCLNICCGSNNFAKRNDVLFSLL--DVAVSISSL--------- 69
Query: 66 GRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLD 125
E +KE+ + +Q + E ++ +LA +YE+EQ + L ++
Sbjct: 70 -----ELRKELISELYVPVQSLEEAPSEYLVSCCLQLATIYEAEQNFELLCSSLEAVEKH 124
Query: 126 SGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKA---SFLVSSSQQEVLNLQYKVC 182
+ L + +++ YL+ A A + + +F VS+ Q L ++ ++C
Sbjct: 125 GHFENDLEQLLLLR-IRLGDAYLKLGKAEKAILTVRTSIPLAFKVSNDQ---LLMELQLC 180
Query: 183 YARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRS 242
AR LD +FLEAA YY + +Q + G+E I E L + C +LA P
Sbjct: 181 NARALDETGQFLEAAKCYYRV--LQYKVPGNELIYRE----NLCSVAQCLLLAIPSPIVL 234
Query: 243 RVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAF-AEELKPHQKALLPDNFTVLD- 300
+ L + ++ Y +++K YL+R E AF L PHQ ++ N + D
Sbjct: 235 QFLQEISLQPSVREIPFYSLVEK-YLKRKFIGKEDGAFLLPFLLPHQ--VIHMNRLIEDG 291
Query: 301 RAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360
R +E N+L S+ + S L ++ ++ + + + M+ ++R+ SIDQ E I F
Sbjct: 292 RHFLETNILFLSEFFEVSSTSILAKHFKLSEEQVDTVVADMVIQERLNASIDQCEGYITF 351
>sp|Q54UJ0|PSD12_DICDI 26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium
discoideum GN=psmD12 PE=2 SV=1
Length = 447
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 133/317 (41%), Gaps = 37/317 (11%)
Query: 80 TLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSK 139
TL I + E + + + L+ + E E + AA++L + +++ ++ +++
Sbjct: 128 TLRTISDGKIFVENERARLTKTLSKIKEDEGDIASAAKILQDLQVET-YGTMEKREKITF 186
Query: 140 CVQIARLYLEDDDAVNAEAFINKASF-LVSSSQQEVLNLQYKVCYARILDLKRKFLEAAL 198
+ R+ + + D + A+ NK + ++ + + L + Y R ++E A
Sbjct: 187 FIDQMRICMNNKDFIRAQLIGNKVNRKTLAEDENQDLKIDYFKQMIRYFSHSANYIEIAR 246
Query: 199 RY---YDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCS 255
Y YD ++K D L Q L IL+A+ ++S +L +Y+ + +
Sbjct: 247 CYLSIYDTPSVEK--------DTPQLLQTLKYICIYVILSASSNEQSDLLNRVYEFKPLT 298
Query: 256 KLKIYPILQKVY--LERI-------LRKPEIDA---FAEELKPHQKALLPDNFTVLDRAM 303
++ Y L + LE I L KPE+D+ F E P+ + L + +
Sbjct: 299 DIQNYKDLLNQFKTLELIRWSTFFELNKPELDSQTVFKTE---------PNAWEDLRKRV 349
Query: 304 IEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF--- 360
IEHN+ S Y IS L LL ++ ++EK S ++ + ID+ + F
Sbjct: 350 IEHNIRVISTYYQKISTARLAELLDLSLDESEKFVSDLVSNKTIFAKIDRPAGIATFTTT 409
Query: 361 EDDTEELQQWDQQIVGL 377
D + L W I L
Sbjct: 410 NDPNKVLNAWANNITSL 426
>sp|Q9D8W5|PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus
GN=Psmd12 PE=1 SV=4
Length = 456
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/188 (22%), Positives = 87/188 (46%), Gaps = 16/188 (8%)
Query: 222 EQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY--LERILRKPEIDA 279
+QAL + V ILA ++S ++ + D++ ++ Y L K++ +E + ++
Sbjct: 264 QQALKSVVLYVILAPFDNEQSDLVHRISSDKKLEEIPKYKDLLKLFTTMELMRWSTLVED 323
Query: 280 FAEEL-KPHQKALLPDNFTV----------LDRAMIEHNLLSASKLYTNISFEELGTLLG 328
+ EL K + D F+ L ++EHN+ +K YT I+ + + LL
Sbjct: 324 YGVELRKGSSETPATDVFSSTEEGEKRWKDLKSRVVEHNIRIMAKYYTRITMKRMAQLLD 383
Query: 329 IAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE---DDTEELQQWDQQIVGLCQALNDIL 385
++ ++E S ++ + +D++ VI+F+ D L W Q++ L +N
Sbjct: 384 LSVDESEAFLSNLVVNKTIFAKVDRLAGVINFQRPKDPNNLLNDWSQKLNSLMSLVNKTT 443
Query: 386 DSMAKKGL 393
+AK+ +
Sbjct: 444 HLIAKEEM 451
>sp|Q2KJ25|PSD12_BOVIN 26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 87/190 (45%), Gaps = 16/190 (8%)
Query: 217 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY--LERILRK 274
+ E +QAL + V ILA ++S ++ + D++ ++ Y L K++ +E +
Sbjct: 259 ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWS 318
Query: 275 PEIDAFAEEL-KPHQKALLPDNFTV----------LDRAMIEHNLLSASKLYTNISFEEL 323
++ + EL K ++ D F L ++EHN+ +K YT I+ + +
Sbjct: 319 TLVEDYGMELRKGSLESPATDVFGYTEEGEKRWKDLKNRVVEHNIRIMAKYYTRITMKRM 378
Query: 324 GTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE---DDTEELQQWDQQIVGLCQA 380
LL ++ ++E S ++ + +D++ +I+F+ D L W Q++ L
Sbjct: 379 AQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKLNSLMSL 438
Query: 381 LNDILDSMAK 390
+N +AK
Sbjct: 439 VNKTTHLIAK 448
>sp|Q5RBI3|PSD12_PONAB 26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 217 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY----LERI- 271
+ E +QAL + V ILA ++S ++ + D++ ++ Y L K++ L R
Sbjct: 259 ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWS 318
Query: 272 ---------LRK-----PEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTN 317
LRK P D F + ++ + L ++EHN+ +K YT
Sbjct: 319 TLVEDYGMELRKGSLESPATDVFGSTEEGEKR------WKDLKNRVVEHNIRIMAKYYTR 372
Query: 318 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE---DDTEELQQWDQQI 374
I+ + + LL ++ ++E S ++ + +D++ +I+F+ D L W Q++
Sbjct: 373 ITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKL 432
Query: 375 VGLCQALNDILDSMAK 390
L +N +AK
Sbjct: 433 NSLMSLVNKTTHLIAK 448
>sp|O00232|PSD12_HUMAN 26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens
GN=PSMD12 PE=1 SV=3
Length = 456
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 28/196 (14%)
Query: 217 DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVY----LERI- 271
+ E +QAL + V ILA ++S ++ + D++ ++ Y L K++ L R
Sbjct: 259 ESEKWQQALKSVVLYVILAPFDNEQSDLVHRISGDKKLEEIPKYKDLLKLFTTMELMRWS 318
Query: 272 ---------LRK-----PEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTN 317
LRK P D F + ++ + L ++EHN+ +K YT
Sbjct: 319 TLVEDYGMELRKGSLESPATDVFGSTEEGEKR------WKDLKNRVVEHNIRIMAKYYTR 372
Query: 318 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE---DDTEELQQWDQQI 374
I+ + + LL ++ ++E S ++ + +D++ +I+F+ D L W Q++
Sbjct: 373 ITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDRLAGIINFQRPKDPNNLLNDWSQKL 432
Query: 375 VGLCQALNDILDSMAK 390
L +N +AK
Sbjct: 433 NSLMSLVNKTTHLIAK 448
>sp|A8X379|PS11B_CAEBR Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis briggsae GN=rpn-6.2 PE=3 SV=1
Length = 411
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 43/87 (49%), Gaps = 5/87 (5%)
Query: 272 LRKPEIDAFAEELKPHQKALLPDNFTV-----LDRAMIEHNLLSASKLYTNISFEELGTL 326
RK + F + L+ H+K L+ D L+R M+E + + Y+ I + +
Sbjct: 283 FRKRSLKDFMKALEEHKKELVEDKVVAVHSQNLERTMLEKEISRVIEPYSEIELSYIARV 342
Query: 327 LGIAPQKAEKIASRMIFEDRMRGSIDQ 353
+G+ EK +RMI + ++ GSIDQ
Sbjct: 343 IGMTVPPTEKAIARMILDKKLMGSIDQ 369
>sp|P68359|CSN4_BRAOL COP9 signalosome complex subunit 4 (Fragments) OS=Brassica oleracea
GN=CSN4 PE=1 SV=1
Length = 45
Score = 42.4 bits (98), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/27 (81%), Positives = 23/27 (85%), Gaps = 1/27 (3%)
Query: 288 QKALLPDNFTVLDRAMIEH-NLLSASK 313
+KA LPD TVLDRAMIEH NLLSASK
Sbjct: 19 KKAYLPDKSTVLDRAMIEHNNLLSASK 45
Score = 37.4 bits (85), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/20 (80%), Positives = 19/20 (95%)
Query: 190 KRKFLEAALRYYDISQIQKR 209
KRKFL+AALRYY ISQI+K+
Sbjct: 1 KRKFLDAALRYYSISQIEKK 20
>sp|Q8SRT7|RPN3_ENCCU 26S proteasome regulatory subunit RPN3 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=RPN3 PE=1 SV=1
Length = 376
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 63/140 (45%), Gaps = 10/140 (7%)
Query: 222 EQALSAAVTCTILAAA-----GPQRSRVLATLYKDERCSKLKIYPILQKVY-LERILRKP 275
E AL TC IL+ G ++ +L L + P L+ + L +++
Sbjct: 183 ESALKCFHTCVILSTNRDLVLGAEKRVILCMLLSSDYSIPYPCKPSLRIYFKLASAVKRA 242
Query: 276 EIDAFAEELKPHQKALLPDNFTV----LDRAMIEHNLLSASKLYTNISFEELGTLLGIAP 331
+I F E L+ ++ L+ L + +I+ + S +Y+ IS+E++ +LGI
Sbjct: 243 DIKKFEETLESNKDELMSQGLYFVAKRLSQNVIQEGIRKISVVYSRISYEDIAHILGINS 302
Query: 332 QKAEKIASRMIFEDRMRGSI 351
+ E + R I + ++G +
Sbjct: 303 GEVEYLVKRTIRKGLIKGKV 322
>sp|Q54HL6|CSN2_DICDI COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum
GN=csn2 PE=1 SV=1
Length = 449
Score = 39.7 bits (91), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 38/128 (29%), Positives = 57/128 (44%), Gaps = 16/128 (12%)
Query: 274 KPEIDAFAEELKPHQKALLPDNFTV-----LDRAMIEHNLLSASKLYTNISFEELGTLLG 328
K +I AF + LK ++K ++ D F L R + LL K YT I + L
Sbjct: 324 KNDIYAFEKILKDNRKTIMDDPFIRMYIEDLLRNIRTQVLLKLLKPYTRIRISFISKELN 383
Query: 329 IAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEE---------LQQWDQQIVGLCQ 379
I E + +I ++++RGSIDQV E DT + + +W QI L
Sbjct: 384 IPSSDVESLLVSLILDNKIRGSIDQVNQ--QLELDTAKSSAYWKYTSIHKWANQIGQLNG 441
Query: 380 ALNDILDS 387
+N+ L S
Sbjct: 442 GINNKLVS 449
>sp|Q94899|CSN2_DROME COP9 signalosome complex subunit 2 OS=Drosophila melanogaster
GN=alien PE=1 SV=2
Length = 444
Score = 38.9 bits (89), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 49/113 (43%), Gaps = 11/113 (9%)
Query: 276 EIDAFAEELKPHQKALLPDNFTV-----LDRAMIEHNLLSASKLYTNISFEELGTLLGIA 330
+I+ F L+ H+ ++ D F L R + L+ + Y NI+ + L I
Sbjct: 323 DINEFETILRQHRSNIMADQFIREHIEDLLRNIRTQVLIKLIRPYKNIAIPFIANALNIE 382
Query: 331 PQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEE------LQQWDQQIVGL 377
P + E + I +D ++G IDQV V+ + L++W QI L
Sbjct: 383 PAEVESLLVSCILDDTIKGRIDQVNQVLQLDKINSSASRYNALEKWSNQIQSL 435
>sp|P34481|PS11B_CAEEL Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis elegans GN=rpn-6.2 PE=3 SV=3
Length = 416
Score = 38.9 bits (89), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Query: 272 LRKPEIDAFAEELKPHQKALLPDNFTV-----LDRAMIEHNLLSASKLYTNISFEELGTL 326
RK + F + L H+ L+ D L+R M+E + + Y+ I + +
Sbjct: 288 FRKRSLKDFVKALAEHKIELVEDKVVAVHSQNLERNMLEKEISRVIEPYSEIELSYIARV 347
Query: 327 LGIAPQKAEKIASRMIFEDRMRGSIDQ 353
+G+ E+ +RMI + ++ GSIDQ
Sbjct: 348 IGMTVPPVERAIARMILDKKLMGSIDQ 374
>sp|Q20938|PS11A_CAEEL Probable 26S proteasome regulatory subunit rpn-6.1
OS=Caenorhabditis elegans GN=rpn-6.1 PE=2 SV=2
Length = 438
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 43/80 (53%), Gaps = 2/80 (2%)
Query: 279 AFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIA 338
+F +EL+ ++ +F L M+E +L + Y+ + E + +GI K EK
Sbjct: 324 SFPQELQ--MDPVVRKHFHSLSERMLEKDLCRIIEPYSFVQIEHVAQQIGIDRSKVEKKL 381
Query: 339 SRMIFEDRMRGSIDQVEAVI 358
S+MI + ++ GS+DQ E ++
Sbjct: 382 SQMILDQKLSGSLDQGEGML 401
>sp|Q6P2U9|CSN3_DANRE COP9 signalosome complex subunit 3 OS=Danio rerio GN=cops3 PE=2
SV=1
Length = 423
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 59/113 (52%), Gaps = 12/113 (10%)
Query: 287 HQKALLPDNFTVLDR----AMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRM 341
H + DN T L + ++ + N+ +K + +S +++ + + + PQ+AEK M
Sbjct: 282 HSETFTRDNNTGLVKQCLSSLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHM 341
Query: 342 IFEDRMRGSIDQVEAVIHFEDDTEE------LQQWDQQIVGLCQALNDILDSM 388
I + + SI+Q + ++ F D+ E+ L + DQ+++ C L++ L SM
Sbjct: 342 IEDGEIYASINQKDGMVCFHDNPEKYNNPAMLHKIDQEMLK-CIELDEKLKSM 393
>sp|P0CN46|EIF3C_CRYNJ Eukaryotic translation initiation factor 3 subunit C
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=NIP1 PE=3 SV=1
Length = 885
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 307 NLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED-DTE 365
+L + + Y ++S L + + + I SRMI+ D + S+DQ++ V+ F +
Sbjct: 739 SLFTYAAYYDSLSLSHLASTFNLPVGRITSIISRMIYTDELAASLDQIDGVVIFHRVEQS 798
Query: 366 ELQQWDQQI 374
E+Q+ QQ+
Sbjct: 799 EVQRLAQQL 807
>sp|P0CN47|EIF3C_CRYNB Eukaryotic translation initiation factor 3 subunit C
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=NIP1 PE=3 SV=1
Length = 885
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 307 NLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED-DTE 365
+L + + Y ++S L + + + I SRMI+ D + S+DQ++ V+ F +
Sbjct: 739 SLFTYAAYYDSLSLSHLASTFNLPVGRITSIISRMIYTDELAASLDQIDGVVIFHRVEQS 798
Query: 366 ELQQWDQQI 374
E+Q+ QQ+
Sbjct: 799 EVQRLAQQL 807
>sp|Q5AX75|EIF3C_EMENI Eukaryotic translation initiation factor 3 subunit C OS=Emericella
nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 /
NRRL 194 / M139) GN=nip1 PE=3 SV=1
Length = 860
Score = 36.6 bits (83), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 308 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 367
L + + Y ++S L T+ ++ +K I SRMI + + ++DQV I F EL
Sbjct: 716 LFTYAPFYDSLSISTLSTMFELSEKKIAAIISRMISHEELGAALDQVNDAIVFRKGV-EL 774
Query: 368 QQWDQQIVGLCQALNDILDSMAK 390
+ QIV L ++L++ K
Sbjct: 775 SRLQSQIVTLADKSMNLLEANEK 797
>sp|Q0CVT0|EIF3C_ASPTN Eukaryotic translation initiation factor 3 subunit C OS=Aspergillus
terreus (strain NIH 2624 / FGSC A1156) GN=nip1 PE=3 SV=1
Length = 864
Score = 35.4 bits (80), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 308 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 367
L + + Y ++S L + + +K + I SRMI + + ++DQV I F EL
Sbjct: 719 LFTYAPFYDSVSIATLSNMFELPEKKIQAIISRMISHEELAAALDQVNNAIVFRKGV-EL 777
Query: 368 QQWDQQIVGLCQALNDILDSMAK 390
+ QIV L ++L++ K
Sbjct: 778 SRLQSQIVTLADKSMNLLEANEK 800
>sp|Q4W9S8|EIF3C_ASPFU Eukaryotic translation initiation factor 3 subunit C OS=Neosartorya
fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 /
FGSC A1100) GN=nip1 PE=3 SV=1
Length = 862
Score = 35.0 bits (79), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 308 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 367
L + + Y ++S L + ++ +K I SRMI + + ++DQV I F EL
Sbjct: 717 LFTYAPFYDSLSIATLSNMFELSEKKISAIISRMISHEELAAALDQVNNAIVFRKGV-EL 775
Query: 368 QQWDQQIVGLCQALNDILDSMAK 390
+ QIV L ++L++ K
Sbjct: 776 SRLQSQIVTLADKSMNLLEANEK 798
>sp|B0YEH1|EIF3C_ASPFC Eukaryotic translation initiation factor 3 subunit C OS=Neosartorya
fumigata (strain CEA10 / CBS 144.89 / FGSC A1163)
GN=nip1 PE=3 SV=1
Length = 862
Score = 35.0 bits (79), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 308 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 367
L + + Y ++S L + ++ +K I SRMI + + ++DQV I F EL
Sbjct: 717 LFTYAPFYDSLSIATLSNMFELSEKKISAIISRMISHEELAAALDQVNNAIVFRKGV-EL 775
Query: 368 QQWDQQIVGLCQALNDILDSMAK 390
+ QIV L ++L++ K
Sbjct: 776 SRLQSQIVTLADKSMNLLEANEK 798
>sp|A1D9P1|EIF3C_NEOFI Eukaryotic translation initiation factor 3 subunit C OS=Neosartorya
fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 /
NRRL 181) GN=nip1 PE=3 SV=1
Length = 862
Score = 35.0 bits (79), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 308 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 367
L + + Y ++S L + ++ +K I SRMI + + ++DQV I F EL
Sbjct: 717 LFTYAPFYDSLSIATLSNMFELSEKKISAIISRMISHEELAAALDQVNNAIVFRKGV-EL 775
Query: 368 QQWDQQIVGLCQALNDILDSMAK 390
+ QIV L ++L++ K
Sbjct: 776 SRLQSQIVTLADKSMNLLEANEK 798
>sp|A1C987|EIF3C_ASPCL Eukaryotic translation initiation factor 3 subunit C OS=Aspergillus
clavatus (strain ATCC 1007 / CBS 513.65 / DSM 816 / NCTC
3887 / NRRL 1) GN=nip1 PE=3 SV=1
Length = 862
Score = 35.0 bits (79), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 308 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 367
L + + Y ++S L ++ ++ +K I SRMI + + ++DQV I F EL
Sbjct: 718 LFTYAPFYDSVSVATLASMFELSEKKISAIISRMISHEELAAALDQVNGAIVFRKGV-EL 776
Query: 368 QQWDQQIVGLC 378
+ QIV L
Sbjct: 777 SRLQSQIVTLA 787
>sp|B3MIF1|EIF3C_DROAN Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
ananassae GN=eIF3-S8 PE=3 SV=1
Length = 906
Score = 35.0 bits (79), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 308 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ-VEAVIHFEDDTEE 366
L + S +YT+IS L + + QK I S+MI + + S+D E V+ +
Sbjct: 760 LFTYSNVYTSISIPSLAQMYELPVQKVHSIISKMIINEELMASLDDPTETVVMHRSEPSR 819
Query: 367 LQQWDQQIVGLCQALNDI 384
LQ Q V L D+
Sbjct: 820 LQALAMQFVDKVTNLVDV 837
>sp|O42897|RPN3_SCHPO Probable 26S proteasome regulatory subunit rpn3
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn3 PE=3 SV=2
Length = 497
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 106/244 (43%), Gaps = 26/244 (10%)
Query: 156 AEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDET 215
A+ ++K SFL ++S + QY + R + L L +S I R+ +
Sbjct: 229 ADRLVSKTSFLTNASNNLAIRYQYYLGRIRAIQLDYTTAHEHL----VSAI--RKAPNTV 282
Query: 216 IDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKP 275
+ LE + +L P+R +++ + K + P L+ + + +R
Sbjct: 283 YAVQFLEAVYKLHIVVQLLMGEIPERR-----IFRQKSLEK-TLVPYLR---ISQAVRIG 333
Query: 276 EIDAFAEELKPHQKALLPDN-FTVLDR---AMIEHNLLSASKLYTNISFEELGTLLGI-A 330
++ AF + L ++ D +T++ R +I+ L S Y+ IS ++ LG+ +
Sbjct: 334 DLCAFTDALSKYEAEFRFDGLYTLICRLRHTVIKTGLRMISLSYSRISLRDVCIKLGLDS 393
Query: 331 PQKAEKIASRMIFEDRMRGSIDQVEAVIHFED-----DTEELQQWDQQIVGLCQAL-NDI 384
+ AE I ++ I + + SID A + + TE+ QQ + + C AL ND
Sbjct: 394 EESAEYIVAKGIRDGVIDASIDHSNAFMASNEAMDIYSTEQPQQAFHERIQFCLALHNDS 453
Query: 385 LDSM 388
+ SM
Sbjct: 454 IKSM 457
>sp|B2V7L9|RPOC_SULSY DNA-directed RNA polymerase subunit beta' OS=Sulfurihydrogenibium
sp. (strain YO3AOP1) GN=rpoC PE=3 SV=1
Length = 1579
Score = 34.3 bits (77), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 5/39 (12%)
Query: 175 LNLQYKVCYAR-----ILDLKRKFLEAALRYYDISQIQK 208
LNL YK+ Y R I+++ RKF E LR+ DI +K
Sbjct: 233 LNLSYKMNYPRLYNKAIIEIARKFSEVGLRFGDIEPTEK 271
>sp|A6H7B5|CSN3_BOVIN COP9 signalosome complex subunit 3 OS=Bos taurus GN=COPS3 PE=2 SV=1
Length = 423
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 302 AMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360
++ + N+ +K + +S +++ + + + PQ+AEK MI + + SI+Q + ++ F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 361 EDDTEE------LQQWDQQIVGLCQALNDILDSM 388
D+ E+ L DQ+++ C L++ L +M
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLK-CIELDERLKAM 393
>sp|O88543|CSN3_MOUSE COP9 signalosome complex subunit 3 OS=Mus musculus GN=Cops3 PE=1
SV=3
Length = 423
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 302 AMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360
++ + N+ +K + +S +++ + + + PQ+AEK MI + + SI+Q + ++ F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 361 EDDTEE------LQQWDQQIVGLCQALNDILDSM 388
D+ E+ L DQ+++ C L++ L +M
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLK-CIELDERLKAM 393
>sp|Q68FW9|CSN3_RAT COP9 signalosome complex subunit 3 OS=Rattus norvegicus GN=Cops3
PE=2 SV=1
Length = 423
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 302 AMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360
++ + N+ +K + +S +++ + + + PQ+AEK MI + + SI+Q + ++ F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 361 EDDTEE------LQQWDQQIVGLCQALNDILDSM 388
D+ E+ L DQ+++ C L++ L +M
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLK-CIELDERLKAM 393
>sp|Q5RFS2|CSN3_PONAB COP9 signalosome complex subunit 3 OS=Pongo abelii GN=COPS3 PE=2
SV=1
Length = 423
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 302 AMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360
++ + N+ +K + +S +++ + + + PQ+AEK MI + + SI+Q + ++ F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 361 EDDTEE------LQQWDQQIVGLCQALNDILDSM 388
D+ E+ L DQ+++ C L++ L +M
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLK-CIELDERLKAM 393
>sp|Q4R898|CSN3_MACFA COP9 signalosome complex subunit 3 OS=Macaca fascicularis GN=COPS3
PE=2 SV=1
Length = 423
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 302 AMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360
++ + N+ +K + +S +++ + + + PQ+AEK MI + + SI+Q + ++ F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 361 EDDTEE------LQQWDQQIVGLCQALNDILDSM 388
D+ E+ L DQ+++ C L++ L +M
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLK-CIELDERLKAM 393
>sp|Q9UNS2|CSN3_HUMAN COP9 signalosome complex subunit 3 OS=Homo sapiens GN=COPS3 PE=1
SV=3
Length = 423
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/94 (24%), Positives = 51/94 (54%), Gaps = 8/94 (8%)
Query: 302 AMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360
++ + N+ +K + +S +++ + + + PQ+AEK MI + + SI+Q + ++ F
Sbjct: 301 SLYKKNIQRLTKTFLTLSLQDMASRVQLSGPQEAEKYVLHMIEDGEIFASINQKDGMVSF 360
Query: 361 EDDTEE------LQQWDQQIVGLCQALNDILDSM 388
D+ E+ L DQ+++ C L++ L +M
Sbjct: 361 HDNPEKYNNPAMLHNIDQEMLK-CIELDERLKAM 393
>sp|Q2U0Q9|EIF3C_ASPOR Eukaryotic translation initiation factor 3 subunit C OS=Aspergillus
oryzae (strain ATCC 42149 / RIB 40) GN=nip1 PE=3 SV=1
Length = 861
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
Query: 308 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 367
L + + Y ++S L + ++ +K I SRMI + + ++DQV I F EL
Sbjct: 716 LFTYAPFYDSLSISTLSNMFELSEKKIAAIISRMISHEELAAALDQVNDAIVFRKGV-EL 774
Query: 368 QQWDQQIVGLCQALNDILDSMAK 390
+ Q+V L ++L++ K
Sbjct: 775 SRLQSQVVTLADKSMNLLEANEK 797
>sp|B4MRZ8|EIF3C_DROWI Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
willistoni GN=eIF3-S8 PE=3 SV=1
Length = 919
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 308 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ-VEAVIHFEDDTEE 366
L + S +YT+IS L + + QK I S+MI + + S+D E V+ +
Sbjct: 759 LFTYSNVYTSISIPSLAEMYELPVQKVHSIISKMIINEELMASLDDPSETVVMHRSEPSR 818
Query: 367 LQQWDQQIVGLCQALNDI 384
LQ Q V L D+
Sbjct: 819 LQALAMQFVDKVTNLVDV 836
>sp|Q1DP77|EIF3C_COCIM Eukaryotic translation initiation factor 3 subunit C
OS=Coccidioides immitis (strain RS) GN=NIP1 PE=3 SV=1
Length = 860
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 308 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 367
L + + Y +S L + + +K I SRMI + + ++DQV I F EL
Sbjct: 715 LFTYAPFYDTLSITTLSNMFDLTEKKISAIISRMISHEELAAALDQVNNAIVFRKGV-EL 773
Query: 368 QQWDQQIVGLCQALNDILDSMAK 390
+ QIV L +L++ K
Sbjct: 774 SRLQSQIVTLADKSMSLLEANEK 796
>sp|A9BDP3|TGT_PROM4 Queuine tRNA-ribosyltransferase OS=Prochlorococcus marinus (strain
MIT 9211) GN=tgt PE=3 SV=1
Length = 372
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 25/53 (47%)
Query: 323 LGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIV 375
LGT+ G++P + K S MI + + E ++H + WDQ I+
Sbjct: 38 LGTVKGVSPDQLLKTGSEMILANTYHLHLQPGEEIVHEAGGLHKFMGWDQPIL 90
>sp|O14164|EIF3C_SCHPO Eukaryotic translation initiation factor 3 subunit C
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=nip1 PE=1 SV=2
Length = 918
Score = 33.9 bits (76), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 308 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE 361
LL+ + Y ++S E L T + Q+ I SR++ + + ++DQV I FE
Sbjct: 799 LLAYAAFYDSVSLEFLATTFDLPVQRVTVIVSRLLSKREIHAALDQVHGAIIFE 852
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.133 0.361
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 128,669,198
Number of Sequences: 539616
Number of extensions: 5021511
Number of successful extensions: 16767
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 52
Number of HSP's that attempted gapping in prelim test: 16665
Number of HSP's gapped (non-prelim): 119
length of query: 397
length of database: 191,569,459
effective HSP length: 120
effective length of query: 277
effective length of database: 126,815,539
effective search space: 35127904303
effective search space used: 35127904303
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)