Query 015984
Match_columns 397
No_of_seqs 258 out of 764
Neff 7.4
Searched_HMMs 29240
Date Mon Mar 25 05:55:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015984.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015984hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_P 26S proteasome regulato 100.0 2.6E-61 8.7E-66 492.8 25.1 333 56-394 95-439 (445)
2 3txn_A 26S proteasome regulato 100.0 4.4E-44 1.5E-48 358.0 32.9 353 19-390 20-388 (394)
3 4b4t_R RPN7, 26S proteasome re 100.0 3.5E-38 1.2E-42 320.5 21.0 297 73-388 109-421 (429)
4 4b4t_Q 26S proteasome regulato 100.0 2.5E-33 8.6E-38 278.6 28.4 350 31-391 68-429 (434)
5 4b4t_S RPN3, 26S proteasome re 99.9 6.5E-27 2.2E-31 238.8 14.1 283 90-388 175-479 (523)
6 4b4t_O 26S proteasome regulato 99.9 1.9E-25 6.5E-30 224.3 18.3 279 102-388 82-391 (393)
7 1ufm_A COP9 complex subunit 4; 99.8 6.7E-21 2.3E-25 149.6 6.8 72 292-363 5-76 (84)
8 3t5x_A PCI domain-containing p 99.7 4E-16 1.4E-20 142.6 15.5 170 174-362 11-192 (203)
9 3t5v_B Nuclear mRNA export pro 99.6 2.9E-13 9.9E-18 137.4 26.4 241 109-363 139-429 (455)
10 3chm_A COP9 signalosome comple 98.4 3.5E-06 1.2E-10 74.2 12.2 129 224-362 25-156 (169)
11 4b0z_A RPN12, 26S proteasome r 98.2 2.3E-05 7.7E-10 72.5 13.9 203 143-362 13-228 (229)
12 3ro3_A PINS homolog, G-protein 97.6 0.0011 3.8E-08 53.9 12.8 113 94-207 7-119 (164)
13 3ro3_A PINS homolog, G-protein 97.6 0.0014 4.7E-08 53.4 13.2 112 95-207 48-159 (164)
14 3u3w_A Transcriptional activat 97.5 0.0089 3E-07 55.6 19.2 188 19-208 76-268 (293)
15 3ro2_A PINS homolog, G-protein 97.4 0.02 6.7E-07 52.3 19.5 113 94-207 181-293 (338)
16 3gw4_A Uncharacterized protein 97.3 0.017 5.9E-07 49.3 17.6 134 71-208 43-178 (203)
17 3sf4_A G-protein-signaling mod 97.3 0.04 1.4E-06 52.2 21.4 114 93-207 184-297 (406)
18 3nf1_A KLC 1, kinesin light ch 97.3 0.01 3.6E-07 54.0 16.4 190 14-206 23-224 (311)
19 3sf4_A G-protein-signaling mod 97.3 0.024 8.3E-07 53.7 19.5 113 95-208 226-338 (406)
20 4a1s_A PINS, partner of inscut 97.2 0.019 6.6E-07 55.0 18.9 113 94-207 221-333 (411)
21 3ro2_A PINS homolog, G-protein 97.2 0.013 4.4E-07 53.5 16.5 111 95-206 222-332 (338)
22 3gw4_A Uncharacterized protein 97.1 0.015 5.2E-07 49.7 14.7 112 95-207 25-137 (203)
23 4a1s_A PINS, partner of inscut 97.0 0.021 7.1E-07 54.8 16.5 111 96-207 263-373 (411)
24 3u3w_A Transcriptional activat 97.0 0.022 7.4E-07 52.9 16.0 105 101-207 80-185 (293)
25 3ulq_A Response regulator aspa 97.0 0.034 1.2E-06 53.3 17.7 101 71-175 201-302 (383)
26 2qfc_A PLCR protein; TPR, HTH, 97.0 0.029 9.8E-07 52.0 16.4 133 72-207 93-226 (293)
27 1qqe_A Vesicular transport pro 96.9 0.023 8E-07 52.8 15.5 110 95-206 76-187 (292)
28 1elr_A TPR2A-domain of HOP; HO 96.9 0.011 3.7E-07 46.3 11.0 104 96-206 4-108 (131)
29 2qfc_A PLCR protein; TPR, HTH, 96.9 0.05 1.7E-06 50.4 17.3 186 20-207 77-267 (293)
30 4ga2_A E3 SUMO-protein ligase 96.8 0.0044 1.5E-07 52.0 8.6 93 101-206 2-94 (150)
31 4gcn_A Protein STI-1; structur 96.8 0.0083 2.8E-07 48.8 10.0 104 96-206 8-112 (127)
32 3nf1_A KLC 1, kinesin light ch 96.8 0.056 1.9E-06 49.0 16.5 112 95-206 152-307 (311)
33 3edt_B KLC 2, kinesin light ch 96.7 0.12 4.3E-06 45.7 18.0 135 71-205 102-280 (283)
34 2ifu_A Gamma-SNAP; membrane fu 96.6 0.025 8.6E-07 53.0 13.3 112 94-208 74-186 (307)
35 3ulq_A Response regulator aspa 96.6 0.027 9.1E-07 54.1 13.6 113 93-207 140-254 (383)
36 2dba_A Smooth muscle cell asso 96.6 0.031 1.1E-06 44.9 12.0 101 96-206 28-128 (148)
37 3edt_B KLC 2, kinesin light ch 96.5 0.028 9.6E-07 50.1 12.5 113 94-207 41-157 (283)
38 4gco_A Protein STI-1; structur 96.5 0.024 8.2E-07 46.0 10.8 102 92-206 9-110 (126)
39 3q15_A PSP28, response regulat 96.5 0.042 1.4E-06 52.8 14.1 115 92-207 137-252 (378)
40 2xev_A YBGF; tetratricopeptide 96.4 0.047 1.6E-06 43.0 12.0 101 100-207 6-106 (129)
41 2ifu_A Gamma-SNAP; membrane fu 96.4 0.3 1E-05 45.5 19.1 108 95-204 115-222 (307)
42 3q15_A PSP28, response regulat 96.4 0.015 5.1E-07 56.0 10.2 113 92-206 178-290 (378)
43 3as5_A MAMA; tetratricopeptide 96.2 0.38 1.3E-05 39.4 17.1 167 17-207 7-174 (186)
44 2vyi_A SGTA protein; chaperone 96.2 0.06 2.1E-06 41.7 11.2 101 93-206 9-109 (131)
45 2ho1_A Type 4 fimbrial biogene 96.2 0.36 1.2E-05 42.4 17.6 99 97-206 106-204 (252)
46 3mkr_A Coatomer subunit epsilo 96.1 0.3 1E-05 45.4 17.7 160 18-206 34-195 (291)
47 2vq2_A PILW, putative fimbrial 96.1 0.51 1.7E-05 40.2 17.9 168 18-206 8-176 (225)
48 3uq3_A Heat shock protein STI1 96.1 0.64 2.2E-05 40.5 20.4 180 17-206 4-202 (258)
49 3vtx_A MAMA; tetratricopeptide 96.0 0.031 1.1E-06 47.3 9.5 98 96-206 5-102 (184)
50 2lni_A Stress-induced-phosphop 96.0 0.04 1.4E-06 43.2 9.4 96 98-206 18-113 (133)
51 3sz7_A HSC70 cochaperone (SGT) 96.0 0.059 2E-06 45.0 11.0 100 95-207 10-109 (164)
52 1elw_A TPR1-domain of HOP; HOP 95.9 0.069 2.4E-06 40.6 10.3 98 96-206 4-101 (118)
53 3n71_A Histone lysine methyltr 95.9 0.11 3.9E-06 52.8 14.6 137 69-207 324-465 (490)
54 3upv_A Heat shock protein STI1 95.9 0.082 2.8E-06 41.8 11.0 99 96-207 4-102 (126)
55 4ga2_A E3 SUMO-protein ligase 95.9 0.015 5.2E-07 48.6 6.7 102 92-206 27-129 (150)
56 3gyz_A Chaperone protein IPGC; 95.9 0.085 2.9E-06 44.6 11.5 103 91-206 31-133 (151)
57 4b4t_Q 26S proteasome regulato 95.8 0.054 1.9E-06 52.3 11.1 111 96-207 95-205 (434)
58 1qqe_A Vesicular transport pro 95.8 0.053 1.8E-06 50.4 10.6 110 97-208 38-149 (292)
59 1a17_A Serine/threonine protei 95.7 0.1 3.5E-06 42.7 11.1 99 95-206 12-110 (166)
60 2fbn_A 70 kDa peptidylprolyl i 95.7 0.087 3E-06 45.5 11.0 105 96-206 38-151 (198)
61 1na0_A Designed protein CTPR3; 95.6 0.13 4.5E-06 39.3 10.7 97 97-206 10-106 (125)
62 3q49_B STIP1 homology and U bo 95.6 0.12 4E-06 41.1 10.7 100 96-208 9-108 (137)
63 3uq3_A Heat shock protein STI1 95.5 0.056 1.9E-06 47.6 9.3 104 95-206 4-108 (258)
64 1hz4_A MALT regulatory protein 95.5 0.96 3.3E-05 42.5 18.7 133 71-206 70-203 (373)
65 2xpi_A Anaphase-promoting comp 95.4 0.47 1.6E-05 47.6 17.0 104 97-206 476-579 (597)
66 2xcb_A PCRH, regulatory protei 95.4 0.24 8.3E-06 40.2 12.2 99 96-207 18-116 (142)
67 3rkv_A Putative peptidylprolyl 95.4 0.068 2.3E-06 44.5 8.9 105 96-206 11-126 (162)
68 3mv2_B Coatomer subunit epsilo 95.4 0.059 2E-06 51.7 9.5 102 100-207 104-208 (310)
69 3as5_A MAMA; tetratricopeptide 95.3 0.18 6.2E-06 41.4 11.5 98 96-206 8-105 (186)
70 4i17_A Hypothetical protein; T 95.3 0.31 1.1E-05 42.6 13.4 103 97-206 43-146 (228)
71 2vgx_A Chaperone SYCD; alterna 95.2 0.13 4.4E-06 42.8 10.1 99 96-207 21-119 (148)
72 3qky_A Outer membrane assembly 95.2 0.2 6.9E-06 45.0 12.0 105 96-207 15-127 (261)
73 2l6j_A TPR repeat-containing p 95.1 0.11 3.6E-06 39.6 8.6 93 97-196 5-97 (111)
74 1hh8_A P67PHOX, NCF-2, neutrop 95.1 0.17 5.7E-06 43.6 10.8 103 97-206 38-150 (213)
75 1hxi_A PEX5, peroxisome target 95.1 0.2 7E-06 39.9 10.6 94 100-206 21-114 (121)
76 2q7f_A YRRB protein; TPR, prot 95.1 1.1 3.7E-05 38.7 16.2 95 99-206 128-222 (243)
77 2fo7_A Synthetic consensus TPR 94.9 0.24 8.1E-06 38.1 10.2 97 97-206 36-132 (136)
78 1hz4_A MALT regulatory protein 94.8 0.26 9E-06 46.5 12.4 113 93-207 11-123 (373)
79 3hym_B Cell division cycle pro 94.8 1.5 5.1E-05 39.7 17.1 100 100-206 163-265 (330)
80 2fo7_A Synthetic consensus TPR 94.8 0.16 5.4E-06 39.2 9.1 95 99-206 4-98 (136)
81 1ihg_A Cyclophilin 40; ppiase 94.8 0.13 4.6E-06 50.0 10.2 105 96-206 223-336 (370)
82 3u4t_A TPR repeat-containing p 94.8 0.096 3.3E-06 46.8 8.6 99 98-206 5-103 (272)
83 2ho1_A Type 4 fimbrial biogene 94.7 0.22 7.7E-06 43.8 10.8 99 97-206 72-170 (252)
84 3qky_A Outer membrane assembly 94.7 0.54 1.8E-05 42.1 13.5 108 96-207 52-178 (261)
85 3ieg_A DNAJ homolog subfamily 94.6 2.5 8.7E-05 38.4 19.2 106 97-206 189-301 (359)
86 1hh8_A P67PHOX, NCF-2, neutrop 94.6 0.26 8.8E-06 42.3 10.6 92 99-206 9-100 (213)
87 2kck_A TPR repeat; tetratricop 94.5 0.084 2.9E-06 39.8 6.6 96 100-206 10-106 (112)
88 3mv2_B Coatomer subunit epsilo 94.5 0.98 3.4E-05 43.1 15.3 135 97-250 137-281 (310)
89 4eqf_A PEX5-related protein; a 94.5 1.4 4.6E-05 41.2 16.3 107 96-206 133-242 (365)
90 2e2e_A Formate-dependent nitri 94.4 0.62 2.1E-05 38.8 12.5 97 97-206 45-144 (177)
91 1p5q_A FKBP52, FK506-binding p 94.4 0.36 1.2E-05 45.9 12.2 108 93-206 144-259 (336)
92 3ieg_A DNAJ homolog subfamily 94.4 2.9 9.9E-05 38.0 22.0 99 99-206 237-335 (359)
93 1wi9_A Protein C20ORF116 homol 94.4 0.11 3.9E-06 38.4 6.5 51 312-362 16-66 (72)
94 2q7f_A YRRB protein; TPR, prot 94.3 0.32 1.1E-05 42.3 10.8 98 96-206 91-188 (243)
95 2xpi_A Anaphase-promoting comp 94.2 1.3 4.6E-05 44.2 16.6 99 100-205 445-544 (597)
96 1a17_A Serine/threonine protei 94.2 0.94 3.2E-05 36.6 12.9 99 97-206 48-146 (166)
97 2y4t_A DNAJ homolog subfamily 94.1 2.4 8.3E-05 40.5 17.7 107 97-206 212-324 (450)
98 4i17_A Hypothetical protein; T 94.1 1 3.4E-05 39.2 13.7 70 96-166 76-146 (228)
99 4eqf_A PEX5-related protein; a 94.1 2.1 7.2E-05 39.8 16.8 96 98-206 215-310 (365)
100 3vtx_A MAMA; tetratricopeptide 94.1 2.2 7.6E-05 35.4 16.3 97 97-206 74-170 (184)
101 3fp2_A TPR repeat-containing p 94.0 1.8 6.2E-05 42.4 16.8 95 98-205 312-406 (537)
102 1fch_A Peroxisomal targeting s 94.0 2.8 9.5E-05 38.7 17.3 98 97-207 218-315 (368)
103 2gw1_A Mitochondrial precursor 93.9 2.9 9.8E-05 40.6 17.9 103 97-206 373-478 (514)
104 4f3v_A ESX-1 secretion system 93.9 0.46 1.6E-05 44.8 11.5 101 93-205 99-199 (282)
105 1xnf_A Lipoprotein NLPI; TPR, 93.9 0.33 1.1E-05 43.1 10.1 100 94-206 41-140 (275)
106 2vq2_A PILW, putative fimbrial 93.8 0.42 1.4E-05 40.7 10.4 99 97-206 43-142 (225)
107 3hym_B Cell division cycle pro 93.8 0.78 2.7E-05 41.6 12.8 105 96-206 193-299 (330)
108 2y4t_A DNAJ homolog subfamily 93.8 3.1 0.00011 39.7 17.7 98 100-206 261-358 (450)
109 3fp2_A TPR repeat-containing p 93.8 2 6.9E-05 42.1 16.6 103 97-206 379-491 (537)
110 3mkr_A Coatomer subunit epsilo 93.8 0.23 7.9E-06 46.3 9.1 24 182-205 205-228 (291)
111 2c2l_A CHIP, carboxy terminus 93.7 0.4 1.4E-05 44.2 10.6 99 97-208 5-103 (281)
112 1kt0_A FKBP51, 51 kDa FK506-bi 93.6 0.41 1.4E-05 47.7 11.2 107 94-206 266-380 (457)
113 3k9i_A BH0479 protein; putativ 93.5 0.27 9.3E-06 38.5 8.0 90 108-207 2-91 (117)
114 2yhc_A BAMD, UPF0169 lipoprote 93.3 1.4 4.7E-05 38.6 13.2 107 97-207 42-177 (225)
115 3n71_A Histone lysine methyltr 93.2 0.38 1.3E-05 48.9 10.3 104 102-207 315-423 (490)
116 3u4t_A TPR repeat-containing p 93.1 0.27 9.2E-06 43.7 8.2 99 98-206 39-137 (272)
117 3cv0_A Peroxisome targeting si 93.1 0.6 2.1E-05 42.3 10.7 99 96-207 172-270 (327)
118 1xnf_A Lipoprotein NLPI; TPR, 93.0 0.13 4.4E-06 45.8 5.8 96 102-206 11-106 (275)
119 3urz_A Uncharacterized protein 92.9 0.76 2.6E-05 40.0 10.7 94 100-206 8-117 (208)
120 1fch_A Peroxisomal targeting s 92.8 5.8 0.0002 36.5 17.6 64 137-206 217-280 (368)
121 2yhc_A BAMD, UPF0169 lipoprote 92.8 0.8 2.7E-05 40.2 10.8 102 98-207 6-126 (225)
122 2pl2_A Hypothetical conserved 92.8 0.96 3.3E-05 39.6 11.3 97 97-206 6-113 (217)
123 2gw1_A Mitochondrial precursor 92.8 2 6.9E-05 41.7 14.7 91 100-203 308-398 (514)
124 2pl2_A Hypothetical conserved 92.3 5.2 0.00018 34.7 18.2 96 97-206 74-180 (217)
125 4abn_A Tetratricopeptide repea 91.7 0.77 2.6E-05 45.8 10.2 97 96-206 137-250 (474)
126 4gyw_A UDP-N-acetylglucosamine 91.7 1.4 4.7E-05 47.0 12.7 97 97-206 10-106 (723)
127 3qou_A Protein YBBN; thioredox 91.6 3.8 0.00013 37.5 14.3 97 97-206 118-214 (287)
128 3cv0_A Peroxisome targeting si 91.6 0.71 2.4E-05 41.8 9.1 104 97-207 207-316 (327)
129 1elr_A TPR2A-domain of HOP; HO 91.5 1.3 4.5E-05 33.7 9.5 71 97-167 39-109 (131)
130 2vsy_A XCC0866; transferase, g 91.4 0.85 2.9E-05 46.2 10.4 94 99-205 26-119 (568)
131 3urz_A Uncharacterized protein 91.4 1.9 6.5E-05 37.3 11.4 66 97-169 55-120 (208)
132 3ma5_A Tetratricopeptide repea 91.3 1.1 3.9E-05 33.9 8.7 65 97-168 8-72 (100)
133 1na3_A Designed protein CTPR2; 91.2 0.62 2.1E-05 33.7 6.9 70 131-206 3-72 (91)
134 1p5q_A FKBP52, FK506-binding p 91.2 1.6 5.6E-05 41.2 11.5 100 94-206 194-294 (336)
135 1rz4_A Eukaryotic translation 90.9 2.2 7.4E-05 38.8 11.4 81 272-362 109-191 (226)
136 3qww_A SET and MYND domain-con 90.8 0.95 3.3E-05 45.1 9.8 98 108-207 310-412 (433)
137 3qww_A SET and MYND domain-con 90.5 2.6 8.7E-05 42.0 12.7 106 70-176 314-424 (433)
138 3qwp_A SET and MYND domain-con 90.3 1.8 6.1E-05 43.0 11.3 109 67-176 300-413 (429)
139 2hr2_A Hypothetical protein; a 90.3 5.4 0.00018 34.1 12.8 113 96-208 11-133 (159)
140 3qwp_A SET and MYND domain-con 90.0 0.76 2.6E-05 45.7 8.2 101 106-208 297-402 (429)
141 2if4_A ATFKBP42; FKBP-like, al 89.8 0.53 1.8E-05 44.8 6.7 106 95-206 178-293 (338)
142 2v5f_A Prolyl 4-hydroxylase su 89.8 1.6 5.6E-05 33.7 8.5 72 98-169 7-78 (104)
143 1w3b_A UDP-N-acetylglucosamine 89.7 13 0.00044 34.7 16.7 93 100-205 241-333 (388)
144 1w3b_A UDP-N-acetylglucosamine 89.6 1.4 4.9E-05 41.5 9.6 92 102-206 5-96 (388)
145 2kat_A Uncharacterized protein 89.5 1.5 5.3E-05 33.6 8.2 65 97-168 20-84 (115)
146 2xev_A YBGF; tetratricopeptide 89.4 2 6.8E-05 33.2 8.9 69 97-169 40-108 (129)
147 2vsy_A XCC0866; transferase, g 89.0 1.4 4.8E-05 44.6 9.5 99 96-207 57-158 (568)
148 4abn_A Tetratricopeptide repea 88.9 0.77 2.6E-05 45.8 7.4 98 95-206 101-208 (474)
149 4gyw_A UDP-N-acetylglucosamine 88.9 1.3 4.3E-05 47.3 9.4 97 97-206 44-140 (723)
150 4g1t_A Interferon-induced prot 88.8 1.7 5.9E-05 42.0 9.7 110 96-206 51-167 (472)
151 2vyi_A SGTA protein; chaperone 88.6 2.2 7.5E-05 32.3 8.5 65 97-168 47-111 (131)
152 2kc7_A BFR218_protein; tetratr 88.4 2.1 7.2E-05 31.6 8.0 86 100-206 4-90 (99)
153 2r5s_A Uncharacterized protein 88.2 6 0.0002 32.8 11.7 94 99-206 9-103 (176)
154 3upv_A Heat shock protein STI1 87.9 2.1 7.1E-05 33.3 8.0 64 97-167 39-102 (126)
155 1kt0_A FKBP51, 51 kDa FK506-bi 87.7 3 0.0001 41.3 10.8 96 93-201 314-409 (457)
156 1wao_1 Serine/threonine protei 87.6 0.86 2.9E-05 45.7 6.8 94 100-206 10-103 (477)
157 1xn7_A Hypothetical protein YH 87.4 0.93 3.2E-05 34.1 5.2 37 312-348 11-47 (78)
158 3sz7_A HSC70 cochaperone (SGT) 87.4 3.2 0.00011 34.0 9.3 67 96-169 45-111 (164)
159 1na3_A Designed protein CTPR2; 87.1 6.3 0.00022 27.9 10.0 65 96-167 9-73 (91)
160 3k9i_A BH0479 protein; putativ 86.9 1.8 6.3E-05 33.4 7.1 70 93-169 24-93 (117)
161 3rkv_A Putative peptidylprolyl 86.9 2 6.7E-05 35.2 7.7 85 92-185 59-144 (162)
162 4f3v_A ESX-1 secretion system 86.8 18 0.00063 33.6 15.1 101 98-206 137-237 (282)
163 1ub9_A Hypothetical protein PH 86.8 3.6 0.00012 31.1 8.6 63 316-378 29-95 (100)
164 1qgp_A Protein (double strande 86.7 1.5 5.3E-05 32.6 6.1 38 317-354 31-68 (77)
165 3ma5_A Tetratricopeptide repea 86.7 2.2 7.6E-05 32.2 7.3 65 137-207 7-71 (100)
166 2fbn_A 70 kDa peptidylprolyl i 86.6 2.9 0.0001 35.4 8.9 89 96-197 88-176 (198)
167 2pzi_A Probable serine/threoni 86.5 3.5 0.00012 43.1 11.1 92 107-206 402-496 (681)
168 2kck_A TPR repeat; tetratricop 86.3 2.8 9.5E-05 30.9 7.7 67 97-168 41-108 (112)
169 4gco_A Protein STI-1; structur 86.1 2.7 9.2E-05 33.4 7.8 74 97-179 48-121 (126)
170 4g1t_A Interferon-induced prot 86.0 3.4 0.00012 39.9 10.0 103 100-206 338-459 (472)
171 4gcn_A Protein STI-1; structur 86.0 4.2 0.00014 32.2 9.0 69 97-166 43-112 (127)
172 3qou_A Protein YBBN; thioredox 85.9 5.2 0.00018 36.5 10.7 98 96-206 151-248 (287)
173 1ouv_A Conserved hypothetical 85.8 3.6 0.00012 36.6 9.4 92 97-205 7-106 (273)
174 1elw_A TPR1-domain of HOP; HOP 85.7 3.7 0.00013 30.4 8.2 65 136-206 3-67 (118)
175 2k02_A Ferrous iron transport 85.6 1 3.5E-05 34.7 4.6 41 310-350 9-49 (87)
176 2kc7_A BFR218_protein; tetratr 85.3 7.8 0.00027 28.3 9.8 61 141-206 4-64 (99)
177 2xcb_A PCRH, regulatory protei 85.1 3.1 0.00011 33.3 7.9 65 136-206 17-81 (142)
178 1na0_A Designed protein CTPR3; 85.1 2.3 7.8E-05 31.9 6.7 69 132-206 4-72 (125)
179 1qbj_A Protein (double-strande 84.9 2.1 7E-05 32.4 6.1 44 307-350 14-60 (81)
180 2vgx_A Chaperone SYCD; alterna 84.7 3.1 0.00011 34.0 7.8 66 135-206 19-84 (148)
181 1ihg_A Cyclophilin 40; ppiase 84.4 4.3 0.00015 39.1 9.7 96 91-199 268-363 (370)
182 3r0a_A Putative transcriptiona 84.3 5.1 0.00018 32.3 8.8 37 318-354 43-79 (123)
183 4b8x_A SCO5413, possible MARR- 83.9 3.1 0.00011 34.4 7.4 67 279-357 23-91 (147)
184 1sfx_A Conserved hypothetical 83.9 7.3 0.00025 29.5 9.2 39 315-353 32-70 (109)
185 2lni_A Stress-induced-phosphop 83.4 6.4 0.00022 29.9 8.8 64 97-167 51-114 (133)
186 2ond_A Cleavage stimulation fa 83.3 7.5 0.00026 35.6 10.6 99 97-207 100-199 (308)
187 2dba_A Smooth muscle cell asso 83.1 4.8 0.00017 31.4 8.1 69 135-206 26-94 (148)
188 2kat_A Uncharacterized protein 82.4 4.3 0.00015 30.9 7.3 65 137-207 19-83 (115)
189 1wao_1 Serine/threonine protei 82.0 3.1 0.00011 41.5 7.9 95 96-201 40-134 (477)
190 4b4t_T 26S proteasome regulato 81.1 4.8 0.00016 37.5 8.3 200 148-362 15-237 (274)
191 3ffl_A Anaphase-promoting comp 80.9 3.8 0.00013 35.4 6.8 70 137-206 20-92 (167)
192 2l6j_A TPR repeat-containing p 80.8 4.2 0.00014 30.2 6.6 64 137-206 4-67 (111)
193 2r5s_A Uncharacterized protein 80.3 11 0.00036 31.2 9.6 101 92-206 36-137 (176)
194 3txn_A 26S proteasome regulato 79.9 27 0.00091 34.2 13.5 129 57-207 41-169 (394)
195 3q49_B STIP1 homology and U bo 79.1 3.7 0.00013 31.9 5.9 66 135-206 7-72 (137)
196 2fbi_A Probable transcriptiona 79.0 15 0.00051 29.2 9.8 43 315-357 48-90 (142)
197 1jgs_A Multiple antibiotic res 79.0 14 0.00048 29.3 9.7 43 315-357 46-88 (138)
198 2v5f_A Prolyl 4-hydroxylase su 78.8 3.9 0.00013 31.4 5.9 69 138-206 6-75 (104)
199 1ouv_A Conserved hypothetical 78.8 9 0.00031 33.9 9.2 93 97-206 39-143 (273)
200 1tbx_A ORF F-93, hypothetical 78.7 14 0.00047 28.0 9.0 60 315-374 20-84 (99)
201 3bpv_A Transcriptional regulat 78.6 16 0.00056 28.8 10.0 44 314-357 40-83 (138)
202 2nnn_A Probable transcriptiona 78.4 19 0.00065 28.5 10.3 43 315-357 50-92 (140)
203 2h6f_A Protein farnesyltransfe 78.2 10 0.00035 36.7 10.0 99 95-206 96-195 (382)
204 2jt1_A PEFI protein; solution 77.0 4.8 0.00017 30.0 5.6 34 316-349 23-56 (77)
205 2a61_A Transcriptional regulat 77.0 20 0.00067 28.6 10.1 43 315-357 45-87 (145)
206 3k0l_A Repressor protein; heli 76.5 20 0.00068 29.6 10.2 51 306-356 49-99 (162)
207 2if4_A ATFKBP42; FKBP-like, al 76.0 3.4 0.00012 39.0 5.7 97 97-206 231-328 (338)
208 2fbh_A Transcriptional regulat 75.9 26 0.0009 27.8 10.5 50 313-362 48-100 (146)
209 1z7u_A Hypothetical protein EF 75.0 22 0.00076 27.7 9.5 42 316-357 34-76 (112)
210 2gxg_A 146AA long hypothetical 74.4 23 0.00078 28.3 9.8 49 307-356 41-89 (146)
211 3g3z_A NMB1585, transcriptiona 74.4 19 0.00064 29.0 9.2 49 314-362 42-93 (145)
212 4g26_A Pentatricopeptide repea 74.1 58 0.002 32.5 14.6 171 20-206 28-204 (501)
213 3gyz_A Chaperone protein IPGC; 74.0 7.6 0.00026 32.2 6.8 65 136-206 35-99 (151)
214 1lj9_A Transcriptional regulat 74.0 23 0.0008 28.2 9.7 42 315-356 41-82 (144)
215 3eco_A MEPR; mutlidrug efflux 73.9 25 0.00084 27.9 9.8 41 316-356 46-86 (139)
216 3oop_A LIN2960 protein; protei 73.5 17 0.00059 29.1 8.8 48 315-362 49-99 (143)
217 2d1h_A ST1889, 109AA long hypo 73.1 14 0.00046 28.0 7.6 41 315-355 34-74 (109)
218 2rdp_A Putative transcriptiona 73.0 30 0.001 27.7 10.3 43 315-357 54-96 (150)
219 1s3j_A YUSO protein; structura 72.8 22 0.00074 28.8 9.4 43 314-356 48-90 (155)
220 3ech_A MEXR, multidrug resista 72.6 14 0.00049 29.6 8.1 44 314-357 48-91 (142)
221 3tgn_A ADC operon repressor AD 72.4 7.6 0.00026 31.3 6.3 51 306-357 41-91 (146)
222 2cfx_A HTH-type transcriptiona 71.7 9.3 0.00032 31.4 6.7 42 313-354 15-59 (144)
223 1hxi_A PEX5, peroxisome target 71.7 6.6 0.00022 30.7 5.6 64 137-206 17-80 (121)
224 3bj6_A Transcriptional regulat 71.7 21 0.00073 28.7 9.0 51 306-356 43-93 (152)
225 3bja_A Transcriptional regulat 71.4 17 0.00057 28.8 8.1 42 315-356 45-86 (139)
226 2frh_A SARA, staphylococcal ac 71.3 14 0.00048 29.5 7.6 41 316-356 52-92 (127)
227 2hr3_A Probable transcriptiona 71.0 29 0.001 27.7 9.7 42 315-356 48-89 (147)
228 2ooe_A Cleavage stimulation fa 70.6 15 0.0005 36.5 9.1 100 96-207 321-421 (530)
229 3cdh_A Transcriptional regulat 70.6 23 0.00077 28.8 9.0 51 306-356 46-96 (155)
230 1r7j_A Conserved hypothetical 70.4 34 0.0012 26.2 10.2 47 318-367 21-67 (95)
231 2p5v_A Transcriptional regulat 69.9 10 0.00034 31.8 6.7 42 313-354 20-64 (162)
232 2h6f_A Protein farnesyltransfe 69.9 10 0.00035 36.6 7.6 97 97-206 132-229 (382)
233 3s2w_A Transcriptional regulat 69.8 25 0.00087 28.7 9.2 42 315-356 62-103 (159)
234 2cg4_A Regulatory protein ASNC 69.8 9.4 0.00032 31.6 6.4 42 313-354 18-62 (152)
235 3nrv_A Putative transcriptiona 69.7 19 0.00066 28.9 8.3 50 307-356 44-93 (148)
236 3cjn_A Transcriptional regulat 69.6 30 0.001 28.3 9.6 42 315-356 64-105 (162)
237 2heo_A Z-DNA binding protein 1 69.5 12 0.00042 26.6 6.1 34 316-349 24-57 (67)
238 2pzi_A Probable serine/threoni 69.5 5.4 0.00018 41.7 5.8 96 97-206 434-529 (681)
239 3f3x_A Transcriptional regulat 69.1 40 0.0014 26.8 10.1 42 315-357 49-90 (144)
240 2htj_A P fimbrial regulatory p 69.0 15 0.00052 26.8 6.8 35 316-350 13-47 (81)
241 2oqg_A Possible transcriptiona 68.6 37 0.0013 26.0 9.8 37 316-352 33-69 (114)
242 3hsr_A HTH-type transcriptiona 68.4 18 0.00063 28.9 7.8 51 306-356 39-89 (140)
243 2fa5_A Transcriptional regulat 68.1 25 0.00087 28.7 8.8 42 315-356 61-102 (162)
244 2ond_A Cleavage stimulation fa 67.3 49 0.0017 29.9 11.5 84 112-206 80-163 (308)
245 2eth_A Transcriptional regulat 67.2 44 0.0015 27.0 10.1 42 315-356 56-97 (154)
246 2nyx_A Probable transcriptiona 67.2 32 0.0011 28.5 9.4 42 315-356 57-98 (168)
247 2dbb_A Putative HTH-type trans 67.0 12 0.0004 30.9 6.4 41 314-354 20-63 (151)
248 3bro_A Transcriptional regulat 66.7 32 0.0011 27.1 9.0 40 317-356 50-89 (141)
249 3rjv_A Putative SEL1 repeat pr 66.5 59 0.002 27.6 11.3 98 97-206 86-197 (212)
250 3ffl_A Anaphase-promoting comp 66.5 22 0.00075 30.5 8.0 95 71-167 37-152 (167)
251 2w25_A Probable transcriptiona 66.4 14 0.00048 30.4 6.8 41 314-354 18-61 (150)
252 2bv6_A MGRA, HTH-type transcri 65.9 19 0.00066 28.7 7.5 42 315-356 49-90 (142)
253 2ia0_A Putative HTH-type trans 65.7 13 0.00046 31.6 6.7 41 314-354 28-71 (171)
254 3bdd_A Regulatory protein MARR 65.7 17 0.00057 28.9 7.0 42 315-356 43-84 (142)
255 2qww_A Transcriptional regulat 64.7 23 0.00078 28.7 7.8 48 315-362 53-105 (154)
256 3rjv_A Putative SEL1 repeat pr 64.2 43 0.0015 28.6 9.9 96 97-206 51-158 (212)
257 3e6m_A MARR family transcripti 63.4 30 0.001 28.4 8.4 48 315-362 65-115 (161)
258 1ku9_A Hypothetical protein MJ 63.3 45 0.0015 26.4 9.3 41 316-356 40-80 (152)
259 3nqo_A MARR-family transcripti 61.8 64 0.0022 27.3 10.4 42 315-356 55-96 (189)
260 4b4t_P 26S proteasome regulato 61.1 1.3E+02 0.0044 29.5 21.8 71 135-205 135-205 (445)
261 2pg4_A Uncharacterized protein 60.9 28 0.00097 26.0 7.1 32 317-348 30-62 (95)
262 3lpz_A GET4 (YOR164C homolog); 60.2 1.2E+02 0.0041 28.9 14.9 77 39-119 80-159 (336)
263 3cuo_A Uncharacterized HTH-typ 60.0 49 0.0017 24.4 10.1 38 316-353 37-74 (99)
264 2qvo_A Uncharacterized protein 59.9 25 0.00086 26.4 6.6 45 318-362 31-75 (95)
265 2y75_A HTH-type transcriptiona 59.7 21 0.00071 28.6 6.4 44 316-359 25-68 (129)
266 3i4p_A Transcriptional regulat 59.0 13 0.00043 31.3 5.2 45 310-354 10-57 (162)
267 2hzt_A Putative HTH-type trans 58.8 34 0.0012 26.4 7.4 42 315-356 25-67 (107)
268 1yyv_A Putative transcriptiona 58.8 70 0.0024 25.7 10.4 42 315-356 46-88 (131)
269 3jth_A Transcription activator 58.7 36 0.0012 25.5 7.4 37 316-352 35-71 (98)
270 3kp7_A Transcriptional regulat 58.6 31 0.001 27.9 7.5 43 314-356 48-92 (151)
271 1pc2_A Mitochondria fission pr 58.6 81 0.0028 26.4 10.6 67 97-168 33-102 (152)
272 2e1c_A Putative HTH-type trans 58.5 13 0.00045 31.7 5.2 43 311-353 35-80 (171)
273 2e2e_A Formate-dependent nitri 58.1 71 0.0024 25.6 10.4 87 107-206 21-110 (177)
274 2cyy_A Putative HTH-type trans 57.7 13 0.00043 30.8 4.9 40 314-353 18-60 (151)
275 3deu_A Transcriptional regulat 57.5 54 0.0018 27.1 9.0 48 315-362 66-116 (166)
276 2ff4_A Probable regulatory pro 55.8 23 0.0008 34.2 7.2 85 88-179 163-251 (388)
277 2hr2_A Hypothetical protein; a 55.3 70 0.0024 27.0 9.2 74 135-208 9-88 (159)
278 3jw4_A Transcriptional regulat 54.7 23 0.00078 28.6 6.0 42 316-357 56-97 (148)
279 2pn6_A ST1022, 150AA long hypo 54.3 16 0.00056 29.9 5.0 42 313-354 13-57 (150)
280 3fm5_A Transcriptional regulat 54.0 50 0.0017 26.5 8.1 42 316-357 53-94 (150)
281 2kko_A Possible transcriptiona 54.0 59 0.002 25.0 8.1 37 316-352 37-73 (108)
282 4esf_A PADR-like transcription 54.0 79 0.0027 24.9 10.4 69 328-396 41-115 (117)
283 1i1g_A Transcriptional regulat 53.8 17 0.00058 29.3 5.0 36 315-350 16-51 (141)
284 3u2r_A Regulatory protein MARR 53.2 61 0.0021 26.6 8.6 42 316-357 61-102 (168)
285 2pex_A Transcriptional regulat 53.1 21 0.00071 29.0 5.5 43 314-356 58-100 (153)
286 2f2e_A PA1607; transcription f 52.9 70 0.0024 26.2 8.8 42 315-356 35-76 (146)
287 4hbl_A Transcriptional regulat 52.8 35 0.0012 27.5 6.9 56 307-362 45-103 (149)
288 2wpv_A GET4, UPF0363 protein Y 52.2 1.5E+02 0.0053 27.7 14.2 78 39-120 78-158 (312)
289 1xd7_A YWNA; structural genomi 52.1 27 0.00094 28.7 6.1 47 311-359 18-64 (145)
290 3lwf_A LIN1550 protein, putati 50.9 28 0.00096 29.4 6.0 46 316-361 43-88 (159)
291 2c2l_A CHIP, carboxy terminus 50.7 38 0.0013 30.5 7.4 64 137-206 4-67 (281)
292 2xm6_A Protein corresponding t 50.4 77 0.0026 30.7 10.1 92 97-205 76-179 (490)
293 3boq_A Transcriptional regulat 49.8 41 0.0014 27.3 6.9 43 314-356 59-101 (160)
294 2qlz_A Transcription factor PF 49.8 1.3E+02 0.0044 27.0 10.6 47 313-362 174-220 (232)
295 2fsw_A PG_0823 protein; alpha- 49.8 82 0.0028 24.0 8.3 42 315-356 36-78 (107)
296 3t8r_A Staphylococcus aureus C 49.4 23 0.00079 29.2 5.1 44 316-359 27-70 (143)
297 2ooe_A Cleavage stimulation fa 49.3 1.2E+02 0.004 29.7 11.3 99 97-206 273-385 (530)
298 1ucr_A Protein DSVD; dissimila 49.2 17 0.00057 27.1 3.6 35 314-348 18-53 (78)
299 1xi4_A Clathrin heavy chain; a 48.1 1E+02 0.0035 35.6 11.4 51 101-166 1200-1250(1630)
300 2v79_A DNA replication protein 47.8 23 0.0008 29.1 4.9 43 315-357 49-93 (135)
301 3dv8_A Transcriptional regulat 47.1 39 0.0013 28.8 6.6 50 316-370 168-217 (220)
302 4fx0_A Probable transcriptiona 46.7 1.1E+02 0.0038 24.7 9.1 41 316-357 51-91 (148)
303 2xm6_A Protein corresponding t 46.6 1.1E+02 0.0039 29.5 10.6 91 98-205 113-215 (490)
304 3f6o_A Probable transcriptiona 46.5 53 0.0018 25.7 6.8 37 316-352 30-66 (118)
305 1ylf_A RRF2 family protein; st 46.4 32 0.0011 28.4 5.6 43 316-359 29-71 (149)
306 1oyi_A Double-stranded RNA-bin 45.9 16 0.00055 27.6 3.2 32 318-349 31-62 (82)
307 2gau_A Transcriptional regulat 45.8 57 0.0019 28.1 7.5 50 316-370 179-228 (232)
308 3l7w_A Putative uncharacterize 45.7 76 0.0026 24.5 7.5 63 323-385 32-99 (108)
309 1r1u_A CZRA, repressor protein 44.4 1E+02 0.0035 23.4 8.3 37 316-352 38-74 (106)
310 4a1g_A Mitotic checkpoint seri 44.3 97 0.0033 26.0 8.3 100 20-121 12-126 (152)
311 1u2w_A CADC repressor, cadmium 44.1 87 0.003 24.6 7.8 35 316-350 55-89 (122)
312 4h7y_A Dual specificity protei 44.0 1.5E+02 0.0051 25.2 9.9 117 25-167 3-124 (161)
313 4fhn_B Nucleoporin NUP120; pro 43.9 58 0.002 36.2 8.8 105 98-203 844-964 (1139)
314 2zcw_A TTHA1359, transcription 43.7 45 0.0015 28.1 6.4 49 316-369 145-193 (202)
315 1klx_A Cysteine rich protein B 43.5 1E+02 0.0035 24.2 8.3 88 102-206 31-126 (138)
316 3mkq_A Coatomer beta'-subunit; 43.4 93 0.0032 31.9 9.9 83 105-203 661-749 (814)
317 2k9l_A RNA polymerase sigma fa 43.4 22 0.00076 26.1 3.7 27 315-341 46-72 (76)
318 4aik_A Transcriptional regulat 43.1 1.3E+02 0.0045 24.3 10.4 41 316-356 45-85 (151)
319 1z91_A Organic hydroperoxide r 43.0 27 0.00091 27.9 4.5 42 315-356 52-93 (147)
320 2p7v_B Sigma-70, RNA polymeras 42.4 33 0.0011 23.9 4.4 29 315-343 23-51 (68)
321 4ev0_A Transcription regulator 42.3 41 0.0014 28.5 5.9 51 315-370 161-211 (216)
322 1z6r_A MLC protein; transcript 42.2 35 0.0012 32.9 6.0 42 308-349 21-62 (406)
323 2wpv_A GET4, UPF0363 protein Y 42.2 1.6E+02 0.0054 27.7 10.3 30 90-121 29-58 (312)
324 1uly_A Hypothetical protein PH 40.8 54 0.0018 28.4 6.4 35 316-350 32-66 (192)
325 3df8_A Possible HXLR family tr 40.7 1.2E+02 0.0042 23.3 8.4 35 318-352 43-78 (111)
326 2pft_A Exocytosis protein; hel 40.4 31 0.0011 35.3 5.5 64 279-342 498-567 (571)
327 2fmy_A COOA, carbon monoxide o 40.4 44 0.0015 28.6 5.8 50 316-370 166-216 (220)
328 3pqk_A Biofilm growth-associat 40.0 94 0.0032 23.3 7.1 38 316-353 35-72 (102)
329 3d0s_A Transcriptional regulat 39.8 64 0.0022 27.6 6.8 49 317-370 177-225 (227)
330 2fxa_A Protease production reg 39.6 80 0.0027 27.3 7.4 43 315-357 60-102 (207)
331 1y0u_A Arsenical resistance op 38.9 44 0.0015 25.0 4.9 35 316-350 42-76 (96)
332 3b02_A Transcriptional regulat 38.6 57 0.002 27.3 6.2 50 316-370 138-187 (195)
333 3e6c_C CPRK, cyclic nucleotide 38.6 31 0.0011 30.4 4.6 63 316-382 176-248 (250)
334 4aez_C MAD3, mitotic spindle c 38.1 2.2E+02 0.0074 25.5 10.0 100 19-121 56-175 (223)
335 1zu2_A Mitochondrial import re 37.7 1.6E+02 0.0054 24.7 8.6 48 153-206 62-120 (158)
336 1b89_A Protein (clathrin heavy 37.2 34 0.0012 34.1 5.0 108 98-205 96-235 (449)
337 2oz6_A Virulence factor regula 36.9 34 0.0012 28.9 4.4 33 316-348 163-195 (207)
338 2v9v_A Selenocysteine-specific 36.6 1.2E+02 0.0042 23.9 7.7 58 318-378 18-75 (135)
339 3k69_A Putative transcription 36.3 39 0.0013 28.5 4.6 48 316-363 27-74 (162)
340 1ku3_A Sigma factor SIGA; heli 35.7 39 0.0013 23.9 4.0 27 316-342 29-55 (73)
341 1tc3_C Protein (TC3 transposas 35.3 58 0.002 20.2 4.5 29 315-343 19-47 (51)
342 2jpc_A SSRB; DNA binding prote 35.0 58 0.002 21.8 4.6 30 314-343 10-39 (61)
343 3bee_A Putative YFRE protein; 34.9 73 0.0025 23.7 5.6 63 138-206 7-72 (93)
344 3fx3_A Cyclic nucleotide-bindi 34.8 66 0.0023 27.7 6.1 41 317-362 178-218 (237)
345 3lpz_A GET4 (YOR164C homolog); 34.8 1.4E+02 0.0049 28.3 8.8 29 91-121 32-60 (336)
346 1ug3_A EIF4GI, eukaryotic prot 34.4 2.9E+02 0.01 25.8 14.7 42 103-152 18-59 (339)
347 2pi2_A Replication protein A 3 33.9 8.6 0.00029 35.6 0.0 38 316-353 223-261 (270)
348 1okr_A MECI, methicillin resis 33.9 1.6E+02 0.0054 22.5 9.1 38 315-352 22-63 (123)
349 2x4h_A Hypothetical protein SS 33.6 1.7E+02 0.0059 22.9 8.6 35 315-349 29-63 (139)
350 3ryp_A Catabolite gene activat 33.6 42 0.0014 28.3 4.5 32 317-348 167-198 (210)
351 2bgc_A PRFA; bacterial infecti 32.9 90 0.0031 27.0 6.7 50 317-371 169-219 (238)
352 3e97_A Transcriptional regulat 32.8 43 0.0015 28.8 4.5 49 315-368 173-221 (231)
353 3iwz_A CAP-like, catabolite ac 32.8 43 0.0015 28.7 4.5 32 317-348 187-218 (230)
354 1on2_A Transcriptional regulat 32.3 1.8E+02 0.0063 22.8 10.9 44 316-362 21-64 (142)
355 2o8x_A Probable RNA polymerase 32.1 47 0.0016 22.8 3.8 29 314-342 28-56 (70)
356 4esb_A Transcriptional regulat 31.7 84 0.0029 24.7 5.7 68 328-395 39-112 (115)
357 1r1t_A Transcriptional repress 31.3 1.9E+02 0.0065 22.7 9.4 37 316-352 58-94 (122)
358 3la7_A Global nitrogen regulat 31.2 47 0.0016 29.1 4.5 43 316-362 192-234 (243)
359 1eij_A Hypothetical protein MT 31.0 19 0.00064 27.1 1.4 22 331-352 36-57 (80)
360 2b1e_A Exocyst complex compone 30.9 46 0.0016 34.1 4.9 64 279-342 496-563 (564)
361 1ft9_A Carbon monoxide oxidati 30.6 45 0.0015 28.6 4.2 34 316-349 162-195 (222)
362 3esl_A Checkpoint serine/threo 30.6 2.7E+02 0.0092 24.4 9.2 102 19-121 13-140 (202)
363 1xmk_A Double-stranded RNA-spe 30.3 86 0.0029 23.2 5.1 35 315-349 23-58 (79)
364 1tty_A Sigma-A, RNA polymerase 30.1 68 0.0023 23.6 4.6 28 316-343 37-64 (87)
365 2hoe_A N-acetylglucosamine kin 29.9 52 0.0018 31.4 4.9 41 308-349 25-65 (380)
366 3hug_A RNA polymerase sigma fa 29.9 89 0.003 23.0 5.3 29 314-342 50-78 (92)
367 1z05_A Transcriptional regulat 29.7 1E+02 0.0034 29.9 7.0 42 309-350 45-86 (429)
368 2fbk_A Transcriptional regulat 29.6 71 0.0024 26.7 5.2 40 317-356 86-125 (181)
369 4a5n_A Uncharacterized HTH-typ 29.6 1.8E+02 0.0062 23.4 7.5 42 315-356 37-79 (131)
370 1zyb_A Transcription regulator 29.5 48 0.0016 28.8 4.2 33 316-348 185-217 (232)
371 2yin_A DOCK2, dedicator of cyt 29.4 1.5E+02 0.0051 29.2 8.2 28 93-120 32-59 (436)
372 1ldd_A APC2WHB, anaphase promo 29.4 1.1E+02 0.0036 22.5 5.3 35 315-349 20-65 (74)
373 3i71_A Ethanolamine utilizatio 29.3 1.1E+02 0.0037 21.5 4.9 36 315-350 16-51 (68)
374 3dkw_A DNR protein; CRP-FNR, H 28.7 45 0.0015 28.5 3.9 33 316-348 177-209 (227)
375 3tqn_A Transcriptional regulat 28.7 1.1E+02 0.0037 23.8 5.8 47 314-362 29-76 (113)
376 2fu4_A Ferric uptake regulatio 28.6 93 0.0032 22.3 5.1 44 316-360 32-80 (83)
377 2fh0_A Hypothetical 16.0 kDa p 28.3 20 0.00068 27.0 1.2 22 331-352 34-55 (81)
378 1q1h_A TFE, transcription fact 28.2 56 0.0019 25.0 4.0 35 316-350 32-66 (110)
379 3cuq_B Vacuolar protein-sortin 28.1 1.9E+02 0.0063 25.7 7.9 44 316-360 167-210 (218)
380 3u64_A Protein TP_0956; tetrat 27.8 3.8E+02 0.013 25.0 11.9 150 31-188 134-292 (301)
381 1je8_A Nitrate/nitrite respons 27.3 1.1E+02 0.0037 22.2 5.3 30 314-343 33-62 (82)
382 1sfu_A 34L protein; protein/Z- 26.9 96 0.0033 22.9 4.7 35 316-350 28-62 (75)
383 4g26_A Pentatricopeptide repea 26.5 4.7E+02 0.016 25.7 11.7 138 108-268 82-221 (501)
384 3kcc_A Catabolite gene activat 26.3 62 0.0021 28.7 4.5 32 317-348 217-248 (260)
385 1b89_A Protein (clathrin heavy 26.2 29 0.00098 34.6 2.3 95 102-204 67-175 (449)
386 1klx_A Cysteine rich protein B 25.8 2.2E+02 0.0076 22.1 7.4 61 97-166 58-126 (138)
387 1x3u_A Transcriptional regulat 25.6 1.2E+02 0.0041 21.2 5.2 30 314-343 28-57 (79)
388 1xi4_A Clathrin heavy chain; a 25.5 8.4E+02 0.029 28.3 22.0 24 99-122 1052-1075(1630)
389 2b0l_A GTP-sensing transcripti 25.4 93 0.0032 23.9 4.7 47 314-360 39-86 (102)
390 3mzy_A RNA polymerase sigma-H 25.3 95 0.0032 24.7 5.1 30 313-342 120-149 (164)
391 2k9m_A RNA polymerase sigma fa 25.3 60 0.002 26.5 3.7 27 315-341 37-63 (130)
392 2wte_A CSA3; antiviral protein 25.2 2.2E+02 0.0074 25.5 7.9 59 316-376 165-230 (244)
393 3f6v_A Possible transcriptiona 25.1 2.7E+02 0.0091 22.8 7.9 37 316-352 70-106 (151)
394 1fse_A GERE; helix-turn-helix 25.0 1.3E+02 0.0045 20.6 5.3 28 315-342 24-51 (74)
395 2lkp_A Transcriptional regulat 24.6 2.3E+02 0.008 21.5 8.9 35 316-350 44-78 (119)
396 2z99_A Putative uncharacterize 24.5 79 0.0027 28.3 4.6 40 301-343 17-56 (219)
397 2h09_A Transcriptional regulat 24.4 2.7E+02 0.0093 22.2 8.8 35 316-350 53-87 (155)
398 2vn2_A DNAD, chromosome replic 24.3 57 0.002 26.1 3.4 38 318-355 52-89 (128)
399 1t6s_A Conserved hypothetical 24.2 85 0.0029 26.6 4.6 40 301-343 9-50 (162)
400 3e4b_A ALGK; tetratricopeptide 24.1 1.4E+02 0.0047 28.8 6.9 92 98-205 178-279 (452)
401 3c57_A Two component transcrip 23.8 1.3E+02 0.0045 22.4 5.3 29 315-343 40-68 (95)
402 2ke4_A CDC42-interacting prote 23.8 2.4E+02 0.0082 21.7 6.8 44 65-109 8-51 (98)
403 3t72_q RNA polymerase sigma fa 23.7 83 0.0028 24.2 4.1 28 316-343 38-65 (99)
404 2xvc_A ESCRT-III, SSO0910; cel 23.4 1.1E+02 0.0036 21.5 4.0 33 316-348 24-56 (59)
405 2rnj_A Response regulator prot 23.1 1E+02 0.0036 22.6 4.5 29 315-343 42-70 (91)
406 1nd9_A Translation initiation 22.9 58 0.002 20.9 2.7 25 317-341 2-26 (49)
407 3mkq_B Coatomer subunit alpha; 22.7 3.6E+02 0.012 23.0 9.6 81 107-203 16-102 (177)
408 3b73_A PHIH1 repressor-like pr 22.6 1.3E+02 0.0045 23.6 5.2 44 315-361 25-70 (111)
409 3iuo_A ATP-dependent DNA helic 22.6 1.1E+02 0.0038 24.4 4.8 33 314-346 29-61 (122)
410 3t5x_A PCI domain-containing p 22.5 1.4E+02 0.0049 25.9 6.0 63 93-157 11-73 (203)
411 3k2z_A LEXA repressor; winged 22.3 2.1E+02 0.0071 24.3 7.0 34 317-350 24-57 (196)
412 2jsc_A Transcriptional regulat 21.9 1.4E+02 0.0047 23.2 5.2 37 316-352 33-69 (118)
413 2lnb_A Z-DNA-binding protein 1 21.5 2E+02 0.007 21.3 5.5 53 292-348 11-65 (80)
414 1j5y_A Transcriptional regulat 21.3 2.2E+02 0.0076 24.0 6.9 33 317-349 36-69 (187)
415 2p5k_A Arginine repressor; DNA 21.2 1.9E+02 0.0065 19.2 6.8 41 315-360 17-62 (64)
416 3f2g_A Alkylmercury lyase; MER 21.2 85 0.0029 28.1 4.1 27 316-342 35-61 (220)
417 2lfc_A Fumarate reductase, fla 21.1 71 0.0024 26.6 3.5 27 315-341 93-119 (160)
418 4b4t_R RPN7, 26S proteasome re 20.8 5.6E+02 0.019 24.5 11.7 74 94-168 166-239 (429)
419 2zkz_A Transcriptional repress 20.5 2.3E+02 0.0079 21.0 6.2 36 316-352 40-75 (99)
420 3bqo_A Telomeric repeat-bindin 20.5 3.3E+02 0.011 24.0 7.6 31 52-82 42-74 (211)
421 3t5v_B Nuclear mRNA export pro 20.0 1.5E+02 0.005 29.5 6.0 68 99-166 179-249 (455)
No 1
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-61 Score=492.82 Aligned_cols=333 Identities=19% Similarity=0.277 Sum_probs=266.9
Q ss_pred HHHHHHHHHhCCCC--hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCch
Q 015984 56 QLLQTFAQELGRLE--PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD 133 (397)
Q Consensus 56 ~~~~~~~~~l~~l~--~~~~~~~~~~~l~~~~~~~~~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~ 133 (397)
.++..++..+.+.| +...+.-+..++.+++++++++|.+++|++.+||++|++.|+|.+|+++|+++++|| ++.++.
T Consensus 95 ~~V~~~~~~l~~~~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et-~~~~~~ 173 (445)
T 4b4t_P 95 YMIQKVMEYLKSSKSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVET-YGSMEM 173 (445)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CSSSCH
T ss_pred HHHHHHHHHHhcCCchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HhcccH
Confidence 45555666665544 223344555677788999999999999999999999999999999999999999999 788999
Q ss_pred hHHHHHHHHHHHHHhhcCChHHHHHHHHHhccccc-CcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcC
Q 015984 134 TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS-SSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIG 212 (397)
Q Consensus 134 ~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~-~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~~~~~ 212 (397)
.+|++++++++|+|++.+||++|+.+++|++...+ ..++|+++++|+.|+|++++++++|.+|+++|+++|.++..
T Consensus 174 ~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~--- 250 (445)
T 4b4t_P 174 SEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAI--- 250 (445)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccc---
Confidence 99999999999999999999999999999987665 44789999999999999999999999999999999998752
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhcCCCCcchHHHHhhhhchhhccccchHHHHHHHHH-hhcChhhHH-HHHHHhchhhhh
Q 015984 213 DETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKIYPILQKVYLE-RILRKPEID-AFAEELKPHQKA 290 (397)
Q Consensus 213 ~~~~~~~~~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~l~~~~~L~k~f~~-~ii~~~~l~-~F~~~L~~h~~~ 290 (397)
..++..+..+|+++++|.||+|++|+|+++++++++|++++++|.|+.|.++|.+ ++++|+.+. .|...|.+|+.+
T Consensus 251 --~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~ 328 (445)
T 4b4t_P 251 --KSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLA 328 (445)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSS
T ss_pred --cCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchh
Confidence 3467788999999999999999999999999999999999999999999999975 566776654 677778888776
Q ss_pred hCCCc----hhhHHHHHHHHHHHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCc---
Q 015984 291 LLPDN----FTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDD--- 363 (397)
Q Consensus 291 ~~~d~----~~~L~~~v~EhNl~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~--- 363 (397)
...++ ++.|+++|+|||++++++||++|+|++||++||+|++++|..+++||.+|+|+|+|||++|+|+|+++
T Consensus 329 ~~~~~~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~ 408 (445)
T 4b4t_P 329 FGGEANKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNS 408 (445)
T ss_dssp CCCSCSSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC------
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCCh
Confidence 55443 58999999999999999999999999999999999999999999999999999999999999999974
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Q 015984 364 TEELQQWDQQIVGLCQALNDILDSMAKKGLP 394 (397)
Q Consensus 364 ~~~l~~w~~~I~~l~~~v~~v~~~i~~~~~~ 394 (397)
++.+++|+.+|+++|+.|++++|+|+||+|-
T Consensus 409 ~~~l~~W~~~i~~l~~~v~k~~~lI~kE~m~ 439 (445)
T 4b4t_P 409 SQLLNEWSHNVDELLEHIETIGHLITKEEIM 439 (445)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999985
No 2
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=4.4e-44 Score=358.03 Aligned_cols=353 Identities=14% Similarity=0.200 Sum_probs=285.0
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHhc--CCcchhhhHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhhccccchHHHH
Q 015984 19 EQYKHILSSVISSNDIVQAKKFIDHMLS--DDVPLVVSRQLLQTFAQELGRLE--PETQKEIANYTLAQIQPRVVSFEEQ 94 (397)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~sr~~~~~~~~~l~~l~--~~~~~~~~~~~l~~~~~~~~~~e~q 94 (397)
...-.+..-....++.+.+..++.++.. ..++--=+-++++.+++.+.++| .+.+.++|..+++|+...++.|.+|
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~ 99 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQ 99 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666678889999888887542 24555556789999999999987 6779999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchh-HHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCc-ch
Q 015984 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDT-FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQ 172 (397)
Q Consensus 95 ~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~-~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~-~~ 172 (397)
++..+||++|.+.|+|.+|.+++.+++-|. +++|++ ..+|+++.++++|.+.+|+.+++.++++|....... ++
T Consensus 100 --~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~--~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~ 175 (394)
T 3txn_A 100 --SLEARLIALYFDTALYTEALALGAQLLREL--KKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP 175 (394)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--TTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred --HHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC
Confidence 999999999999999999999999999997 667766 699999999999999999999999999998776555 79
Q ss_pred HHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCCcchHHHHh----
Q 015984 173 EVLNLQYKVCYARILD-LKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLAT---- 247 (397)
Q Consensus 173 ~~l~~~~~~~~~~~~~-~~r~f~~Aa~~y~e~~~~~~~~~~~~~~~~~~~~~~L~~av~~~ILa~~~~~rs~ll~~---- 247 (397)
|.+++.++.|.|.+|+ .+|+|.+|+++|++++.+|+ +.+.+.+.++++|+++|++++..-++...++..
T Consensus 176 p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~------~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~ 249 (394)
T 3txn_A 176 PKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD------SVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAI 249 (394)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT------TTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHH
T ss_pred HHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhccc------ccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccc
Confidence 9999999999999999 89999999999999998863 456778899999999999997654444443321
Q ss_pred hhhchhhccccchHHHHHHHHHhhcChhhHHHHHHHhchhhhhhCCCch-----hhHHHHHHHHHHHHHHhhccccCHHH
Q 015984 248 LYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNF-----TVLDRAMIEHNLLSASKLYTNISFEE 322 (397)
Q Consensus 248 l~~d~~~~~l~~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~-----~~L~~~v~EhNl~~is~~Y~~Isl~~ 322 (397)
.|.+ +++++|..|.++|.+ +++..|...|..|+..+..|++ ..|++.|++||++.+++||++|+|++
T Consensus 250 ~~~~---pei~~l~~L~~a~~~-----~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~ 321 (394)
T 3txn_A 250 TYSG---RDIDAMKSVAEASHK-----RSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAH 321 (394)
T ss_dssp TTCS---HHHHHHHHHHHHHHT-----TCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHH
T ss_pred ccCC---ccHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHH
Confidence 1223 456788899999976 8999999999999888888884 68999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCcchHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015984 323 LGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAK 390 (397)
Q Consensus 323 La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~~~~l~~w~~~I~~l~~~v~~v~~~i~~ 390 (397)
||+.||+|++++|..+++||.+|+|+|+|||++|+|+|.++...-..|...+ ++++.++++++.+..
T Consensus 322 iA~~l~ls~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~al-e~l~~ls~vVd~L~~ 388 (394)
T 3txn_A 322 VAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVL-ETIQSMGKVVDTLYQ 388 (394)
T ss_dssp HHHHHTCCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC---------------------------
T ss_pred HHHHHCcCHHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHH-HHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987632222343333 566666666665543
No 3
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-38 Score=320.51 Aligned_cols=297 Identities=14% Similarity=0.130 Sum_probs=221.4
Q ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCC
Q 015984 73 QKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDD 152 (397)
Q Consensus 73 ~~~~~~~~l~~~~~~~~~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d 152 (397)
..+.+...+.+... +...|.++.+....||++|++.||+.+|.+++.+++.+| .+.++|+++++.++|+|++.+|
T Consensus 109 ~l~~l~~~~~~~~~-~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~----~~~~~kid~~l~~irl~l~~~d 183 (429)
T 4b4t_R 109 KIKELNEKIQKLEE-DDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKA----ISTGAKIDVMLTIARLGFFYND 183 (429)
T ss_dssp CHHHHHHHHHHHHH-CCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHH----TCCCSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHh-hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHHHHhcc
Confidence 34445555555532 334566666888999999999999999999999999887 3568999999999999999999
Q ss_pred hHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHH
Q 015984 153 AVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCT 232 (397)
Q Consensus 153 ~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~~~~~~~~~~~~~~~~~L~~av~~~ 232 (397)
|.+++.+++||...+..++||+++++|+.|.|+++++.|+|.+|+++|++++.+++ ..+...+..++.|.++|+
T Consensus 184 ~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~------~~e~~~~~~~~~y~~l~a 257 (429)
T 4b4t_R 184 QLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT------SIELTSYESIATYASVTG 257 (429)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC------CSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC------ccchhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999864 234445556666666666
Q ss_pred HhcCCCCcchHHHHhhhhchhhcc----cc---chHHHHHHHHHhhcChhhHHH-HHHHhchhhhhhC-----CCchhhH
Q 015984 233 ILAAAGPQRSRVLATLYKDERCSK----LK---IYPILQKVYLERILRKPEIDA-FAEELKPHQKALL-----PDNFTVL 299 (397)
Q Consensus 233 ILa~~~~~rs~ll~~l~~d~~~~~----l~---~~~~L~k~f~~~ii~~~~l~~-F~~~L~~h~~~~~-----~d~~~~L 299 (397)
++ ++.|+++.++++.++++.. .| .+..+..+|.. ..... |...+..+...+. .+++..|
T Consensus 258 l~---~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~-----~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l 329 (429)
T 4b4t_R 258 LF---TLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYA-----SDYASYFPYLLETYANVLIPCKYLNRHADFF 329 (429)
T ss_dssp HH---TTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHSTTTTTCTTSTTTHHHH
T ss_pred Hh---cCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHhhhccCHHHHHHHHHH
Confidence 66 7899999999988876532 23 34445555543 33333 3333444443333 3446899
Q ss_pred HHHHHHHHHHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCcc---hHHHHHHHHHHH
Q 015984 300 DRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDT---EELQQWDQQIVG 376 (397)
Q Consensus 300 ~~~v~EhNl~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~~---~~l~~w~~~I~~ 376 (397)
.+++++||+..+.+||++|+|++||++||+|++++|+.+++||.+|+|+|+|||++|+|++.+|+ ...++|-.+...
T Consensus 330 ~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~gd~ 409 (429)
T 4b4t_R 330 VREMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQGDG 409 (429)
T ss_dssp HHHHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC-----------------
T ss_pred HHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999864 345556666666
Q ss_pred HHHHHHHHHHHH
Q 015984 377 LCQALNDILDSM 388 (397)
Q Consensus 377 l~~~v~~v~~~i 388 (397)
++..+.+..+.|
T Consensus 410 Ll~riqkl~~~i 421 (429)
T 4b4t_R 410 LLTKLQKYGAAV 421 (429)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 666665554443
No 4
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-33 Score=278.57 Aligned_cols=350 Identities=14% Similarity=0.194 Sum_probs=259.5
Q ss_pred CCCHHHHHHHHHHHhc--CCcchhhhHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHH
Q 015984 31 SNDIVQAKKFIDHMLS--DDVPLVVSRQLLQTFAQELGRLE--PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLY 106 (397)
Q Consensus 31 ~~~~~~~~~~~~~~~~--~~~~~~~sr~~~~~~~~~l~~l~--~~~~~~~~~~~l~~~~~~~~~~e~q~~~l~~~La~~~ 106 (397)
.++.+.+..++..++. ..++--.+..++...+..+...+ .+..++++..++.|.......+++. ++...||.+|
T Consensus 68 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~~~~~la~~~ 145 (434)
T 4b4t_Q 68 MGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKH--SLSIKLATLH 145 (434)
T ss_dssp HTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHH--HHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHH--HHHHHHHHHH
Confidence 3444444445544332 22332333445666667766554 5677899999999988777766655 8999999999
Q ss_pred HhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCc-chHHHHHHHHHHHHH
Q 015984 107 ESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQEVLNLQYKVCYAR 185 (397)
Q Consensus 107 e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~-~~~~l~~~~~~~~~~ 185 (397)
++.|+|.+|.+.+.++..++ .+..+...++++++.++|+|+..+|+++|+.+++++....... .++.++..++.++|.
T Consensus 146 ~~~g~~~~A~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~ 224 (434)
T 4b4t_Q 146 YQKKQYKDSLALINDLLREF-KKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGI 224 (434)
T ss_dssp HHHTCHHHHHHHHHHHHHHH-TTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred HHccChHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Confidence 99999999999999999888 5666667899999999999999999999999999998766544 467889999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCCcchHHHHhhhh--chhhccccchHHH
Q 015984 186 ILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYK--DERCSKLKIYPIL 263 (397)
Q Consensus 186 ~~~~~r~f~~Aa~~y~e~~~~~~~~~~~~~~~~~~~~~~L~~av~~~ILa~~~~~rs~ll~~l~~--d~~~~~l~~~~~L 263 (397)
++.+.++|.+|+.+|.+++.++... ........+..++.++++|.++.+........+..... ....+.+|.+..+
T Consensus 225 ~~~~~~~y~~A~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 302 (434)
T 4b4t_Q 225 LHCEDKDYKTAFSYFFESFESYHNL--TTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAV 302 (434)
T ss_dssp HTTSSSCHHHHHHHHHHHHHHHHHT--TTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHhhhh--hhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHH
Confidence 9999999999999999999987632 22334567888999999999997766555544443321 2233567889999
Q ss_pred HHHHHHhhcChhhHHHHHHHhchhhhhhCCCch-----hhHHHHHHHHHHHHHHhhccccCHHHHHHHhCCChHHHHHHH
Q 015984 264 QKVYLERILRKPEIDAFAEELKPHQKALLPDNF-----TVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIA 338 (397)
Q Consensus 264 ~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~-----~~L~~~v~EhNl~~is~~Y~~Isl~~La~ll~ls~~~~E~~l 338 (397)
...|.+ .++..|...+..|...+..|+. ..+.+.+++||+..+++||++|++++||+.||+|++++|..+
T Consensus 303 ~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l 377 (434)
T 4b4t_Q 303 AEAYNN-----RSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKL 377 (434)
T ss_dssp HHHHHH-----TCHHHHHHHHHHTHHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHH
T ss_pred HHHHHh-----hhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHH
Confidence 999976 7788888888888877777763 678999999999999999999999999999999999999999
Q ss_pred HHhHhcCceEEEeccCCcEEEECCcchHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015984 339 SRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLCQALNDILDSMAKK 391 (397)
Q Consensus 339 s~mI~~grl~gkIDQv~giV~f~~~~~~l~~w~~~I~~l~~~v~~v~~~i~~~ 391 (397)
++||.+|+|+|+|||++|+|+|..+.+....|...+ ..++.++++++.+..+
T Consensus 378 ~~lI~~~~i~a~id~~~g~v~~~~~~~~~~~~~~~l-~~~~~l~~~vd~L~~k 429 (434)
T 4b4t_Q 378 SQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSAL-ELVGQLNKVVDQLFEK 429 (434)
T ss_dssp HHHHHHTSSCCEEETTTTEEECC------------------------------
T ss_pred HHHHhCCCcceecccccCeEeeCCCcchhHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 999999999999999999999976444434455444 6667777888776544
No 5
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.94 E-value=6.5e-27 Score=238.77 Aligned_cols=283 Identities=18% Similarity=0.167 Sum_probs=192.3
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcHHHHH-----------HHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHH
Q 015984 90 SFEEQVLIIREKLADLYESEQQWSKAA-----------QMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEA 158 (397)
Q Consensus 90 ~~e~q~~~l~~~La~~~e~~~d~~~Aa-----------~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~ 158 (397)
++.--.+++...++..||..|+..+.. .+|...+..+ -..|...+..++..++|+||..+++.+|..
T Consensus 175 tlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~--lr~D~~~qa~l~nllLRnYL~~~~y~qA~~ 252 (523)
T 4b4t_S 175 SLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS--LKHDNETKAMLINLILRDFLNNGEVDSASD 252 (523)
T ss_dssp ----------------------------CHHHHHHHHTHHHHHHHHCC--SCSSSCHHHHHHHHHHHHHHHSSCSTTHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh--cccCcchhHHHHHHHHHHHHccCcHHHHHH
Confidence 445455677677777787777665432 2233333333 445777788999999999999999999999
Q ss_pred HHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHhcCCC
Q 015984 159 FINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAG 238 (397)
Q Consensus 159 ~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~~~~~~~~~~~~~~~~~L~~av~~~ILa~~~ 238 (397)
+++|+.......++.+ .++|+.|.|++++.+++|.+|..++..++...+ ........+..++|++|+|.+|.+..
T Consensus 253 lvsk~~fP~~~~sn~q-~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap----~~~~a~gfr~~a~K~lI~V~LLlG~i 327 (523)
T 4b4t_S 253 FISKLEYPHTDVSSSL-EARYFFYLSKINAIQLDYSTANEYIIAAIRKAP----HNSKSLGFLQQSNKLHCCIQLLMGDI 327 (523)
T ss_dssp HHHHHCSCTTTSCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCS----CSSSCSHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhcCcCCcccCCHHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC----cchhhhhHHHHHHHHHHhHHhhcCCC
Confidence 9999986654434444 489999999999999999999999999887421 22334567889999999999999999
Q ss_pred CcchHHHHhhhhchhhccccchHHHHHHHHHhhcChhhHHHHHHHhchhhhhhCCCch----hhHHHHHHHHHHHHHHhh
Q 015984 239 PQRSRVLATLYKDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNF----TVLDRAMIEHNLLSASKL 314 (397)
Q Consensus 239 ~~rs~ll~~l~~d~~~~~l~~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~----~~L~~~v~EhNl~~is~~ 314 (397)
|+|+.+.+..++. .+..|..|.++|-. +++..|...+.+|+..+.+||. ..|+.+|+.++++.+++.
T Consensus 328 P~r~lf~q~~l~~----~L~pY~~Lv~Avr~-----GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~ 398 (523)
T 4b4t_S 328 PELSFFHQSNMQK----SLLPYYHLTKAVKL-----GDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLT 398 (523)
T ss_dssp CCHHHHTTTSCHH----HHHHHHHHHHHHHH-----TCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCC
T ss_pred CChHHhhchhHHH----HHHHHHHHHHHHHc-----CCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 9998776554442 25557889999854 9999999999999999999996 345789999999999999
Q ss_pred ccccCHHHHHHHhCCC-hHHHHHHHHHhHhcCceEEEeccCCcEEEECCc------chHHHHHHHHHHHHHHHHHHHHHH
Q 015984 315 YTNISFEELGTLLGIA-PQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDD------TEELQQWDQQIVGLCQALNDILDS 387 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls-~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~------~~~l~~w~~~I~~l~~~v~~v~~~ 387 (397)
|++|+++.+|..++++ ++++|.++++||.+|.|+|+|||.+|+|.|.+. .+++..|+.+|..+++..|..+..
T Consensus 399 YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~~d~yst~ep~~af~~RI~~cl~L~ne~vka 478 (523)
T 4b4t_S 399 YKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLNIYDSEDPQQVFDERIKFANQLHDEYLVS 478 (523)
T ss_dssp SSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSSSCC---------------------------
T ss_pred HhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999995 788999999999999999999999999999752 367889999998777777877766
Q ss_pred H
Q 015984 388 M 388 (397)
Q Consensus 388 i 388 (397)
+
T Consensus 479 M 479 (523)
T 4b4t_S 479 M 479 (523)
T ss_dssp -
T ss_pred c
Confidence 5
No 6
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=1.9e-25 Score=224.27 Aligned_cols=279 Identities=15% Similarity=0.156 Sum_probs=194.9
Q ss_pred HHHHHHhhhcHHHHHHHHhhchhcc-----CC-----CCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcc
Q 015984 102 LADLYESEQQWSKAAQMLSGIDLDS-----GM-----RVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (397)
Q Consensus 102 La~~~e~~~d~~~Aa~~L~~i~~et-----~~-----~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~ 171 (397)
+....+...|..+|.+.|.++.... .. ..-.....+.+.+.++|+|+..+|...|+.+++++...+...+
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Confidence 3445566778888888888764221 00 0112234788889999999999999999999999999887654
Q ss_pred --hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCCcchHHHHhhh
Q 015984 172 --QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLY 249 (397)
Q Consensus 172 --~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~~~~~~~~~~~~~~~~~L~~av~~~ILa~~~~~rs~ll~~l~ 249 (397)
++.+...||.+.+.+|..+++|.+++..+...+.+.+. ....+++++......+++|++++|..+...+++....
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~---~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~ 238 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEP---STSITLAERQQLAYDLSISALLGDKIYNFGELLHHPI 238 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT---SSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCC
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc---cccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChH
Confidence 55788889999999999999998877777777665431 2346788888888899999999999999999998876
Q ss_pred hch--hhccccchHHHHHHHHHhhcChhhHHHHHHHhchhhhhh--CCCchhhHHHHHHHHHH--HHHHhhccccCHHHH
Q 015984 250 KDE--RCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKAL--LPDNFTVLDRAMIEHNL--LSASKLYTNISFEEL 323 (397)
Q Consensus 250 ~d~--~~~~l~~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~--~~d~~~~L~~~v~EhNl--~~is~~Y~~Isl~~L 323 (397)
.+. ..++.+++..|.++|.. +++..|...+++|.... .......+.+.++...+ ++.+++|++|+|+.|
T Consensus 239 i~~L~~~~~~~~l~~Ll~~f~~-----g~~~~f~~~~~~~~~~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~i 313 (393)
T 4b4t_O 239 METIVNDSNYDWLFQLLNALTV-----GDFDKFDSLIKVQISKIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDI 313 (393)
T ss_dssp TTSSCSSSSTTHHHHHHHHHHH-----TCHHHHHHHCCHHHHHSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHH
T ss_pred HHHhhcCCchHHHHHHHHHHhc-----CCHHHHHHHHHHhhhhCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHH
Confidence 543 22456778888999875 89999998888886543 11223445555554544 345578999999999
Q ss_pred HHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCc-------------chHHHHHHHHHHHHHHHHHHHHHHH
Q 015984 324 GTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDD-------------TEELQQWDQQIVGLCQALNDILDSM 388 (397)
Q Consensus 324 a~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~-------------~~~l~~w~~~I~~l~~~v~~v~~~i 388 (397)
|+.+|+|++++|..+++||.+|+|.|+|||++|+|++++. .+.|..|+.+++++...|+.....|
T Consensus 314 a~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~pR~~~~~q~~~l~~~L~~W~~~v~~l~~~ve~~~~~i 391 (393)
T 4b4t_O 314 SKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQPRIISGDQITKMKDRLVEWNDQVEKLGKKMEARGQSI 391 (393)
T ss_dssp HHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC-----------------------------------------
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEeccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999872 1468888888888888777665443
No 7
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.82 E-value=6.7e-21 Score=149.59 Aligned_cols=72 Identities=63% Similarity=0.914 Sum_probs=69.4
Q ss_pred CCCchhhHHHHHHHHHHHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCc
Q 015984 292 LPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDD 363 (397)
Q Consensus 292 ~~d~~~~L~~~v~EhNl~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~ 363 (397)
++|+++.|+++|+||||+.+++||++|++++||++|++|++++|+.+++||.+|+|+|+|||++|+|+|+++
T Consensus 5 ~~~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~ 76 (84)
T 1ufm_A 5 SSGGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETR 76 (84)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCS
T ss_pred CcccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCc
Confidence 467889999999999999999999999999999999999999999999999999999999999999999875
No 8
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.69 E-value=4e-16 Score=142.61 Aligned_cols=170 Identities=12% Similarity=0.125 Sum_probs=138.7
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCCcchHHHHhhhhchh
Q 015984 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDER 253 (397)
Q Consensus 174 ~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~~~~~~~~~~~~~~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~ 253 (397)
.-++.|+.|.|++++.+++|.+|..++.+++.. .+......+..+|+++|.+.+|.+.-|.+.-+ .+ ++
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~------~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~ll-~~-~~--- 79 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEH------CHRSSQKNKRMILIYLLPVKMLLGHMPTVELL-KK-YH--- 79 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------SCTTCHHHHHHHHHHHHHHHHHTTCEECHHHH-HH-TT---
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH------CCHhHHHHHHHHHHHHHHHHHHcCCCCCHHHh-hh-Cc---
Confidence 446889999999999999999999999999986 34445678889999999999998876665433 22 21
Q ss_pred hccccchHHHHHHHHHhhcChhhHHHHHHHhchhhhhhCCCchhhHHHHHHHHHHHHHHh------hccccCHHHHHHHh
Q 015984 254 CSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASK------LYTNISFEELGTLL 327 (397)
Q Consensus 254 ~~~l~~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~~~L~~~v~EhNl~~is~------~Y~~Isl~~La~ll 327 (397)
+..|..|.+++.. +++..|++.|..|+..+.++|.-.+-.++....++...+ .|++|+++.++..+
T Consensus 80 ---~~~y~~L~~Avr~-----Gdl~~f~~~l~~~~~~f~~~~~~lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l 151 (203)
T 3t5x_A 80 ---LMQFAEVTRAVSE-----GNLLLLHEALAKHEAFFIRCGIFLILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVAL 151 (203)
T ss_dssp ---CGGGHHHHHHHHH-----TCHHHHHHHHHHTHHHHHHHTCHHHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHH
T ss_pred ---hhHHHHHHHHHHh-----CCHHHHHHHHHHhHHHHHHCChHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHH
Confidence 1248889988865 999999999999999888888644445555544444433 69999999999999
Q ss_pred C------CChHHHHHHHHHhHhcCceEEEeccCCcEEEECC
Q 015984 328 G------IAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 362 (397)
Q Consensus 328 ~------ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~ 362 (397)
+ ++.+++|-++++||.+|.|+|+||+.+|++++.+
T Consensus 152 ~~~~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk 192 (203)
T 3t5x_A 152 KFMQVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSK 192 (203)
T ss_dssp HHTTCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECS
T ss_pred HhcCCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECC
Confidence 5 4899999999999999999999999999988875
No 9
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.60 E-value=2.9e-13 Score=137.39 Aligned_cols=241 Identities=12% Similarity=0.099 Sum_probs=176.1
Q ss_pred hhcHHHHHHHHhhchhcc-CCCCC------chhHHHHHH--HHHHHHHhhcCChHHHHHHHHHhccccc----CcchHHH
Q 015984 109 EQQWSKAAQMLSGIDLDS-GMRVI------DDTFRLSKC--VQIARLYLEDDDAVNAEAFINKASFLVS----SSQQEVL 175 (397)
Q Consensus 109 ~~d~~~Aa~~L~~i~~et-~~~~~------~~~~kle~~--L~i~Rl~L~~~d~~~A~~~l~ka~~~~~----~~~~~~l 175 (397)
....++|++++..+=--+ +.|.. +.+.+.-++ ....++|+..++...|+..++.+...-. +.-...-
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q 218 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQ 218 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHH
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccc
Confidence 457788888888753211 01221 123333333 4567999999999999999988765422 1123456
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-hhhhcCCCCC---CHHHHHHHHHHHHHHHHhcCCCCcchHHHHhhhhc
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI-QKRQIGDETI---DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKD 251 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~-~~~~~~~~~~---~~~~~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d 251 (397)
++.|+.|.|++++.+++|.+|..++.+++.. .. ...- ....+..+|+++|.+.+|.+.-|.++- +.+.+ +
T Consensus 219 ~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp----~~~~~~~~~~n~~~ILkyLIpv~LLlG~~P~~~l-l~k~~-~ 292 (455)
T 3t5v_B 219 QIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLN----LPLTNQAITRNGTRILNYMIPTGLILGKMVKWGP-LRPFL-S 292 (455)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHTTCCBCHHH-HGGGS-C
T ss_pred eEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCC----ccccchhhhhHHHHHHHHHHHHHHHcCCCCCHHH-Hcccc-h
Confidence 8999999999999999999999999999986 32 1110 135677899999999999987788764 33322 1
Q ss_pred hhhccc-cchHHHHHHHHHhhcChhhHHHHHHHhchhhhhhCCCch-hhHHHHHHHH---HHHH-----HHhhc--cccC
Q 015984 252 ERCSKL-KIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNF-TVLDRAMIEH---NLLS-----ASKLY--TNIS 319 (397)
Q Consensus 252 ~~~~~l-~~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~-~~L~~~v~Eh---Nl~~-----is~~Y--~~Is 319 (397)
..+ |.|..|.+++-. +++..|+..|..|+.++.++|. -.|..++... |+.+ .+.+| ++|+
T Consensus 293 ---~~L~~~y~~L~~AVr~-----Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLirkv~~~~~~~~~~srI~ 364 (455)
T 3t5v_B 293 ---QETIDNWSVLYKHVRY-----GNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLIKTVIKSWTTEWGQNKLP 364 (455)
T ss_dssp ---HHHHHHHHHHHHHHHH-----TCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCEEE
T ss_pred ---HHHHHHHHHHHHHHHh-----CCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCeee
Confidence 223 236667766644 9999999999999999988887 4444333332 3333 36668 8999
Q ss_pred HHHHHHHhC---------------------CChHHHHHHHHHhHhcCceEEEeccCCcEEEECCc
Q 015984 320 FEELGTLLG---------------------IAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDD 363 (397)
Q Consensus 320 l~~La~ll~---------------------ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~ 363 (397)
++.++..++ ++.+++|-+++.+|.+|.|+|+||+.+|++++.+.
T Consensus 365 l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlSK~ 429 (455)
T 3t5v_B 365 YSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVKKT 429 (455)
T ss_dssp HHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEECCC
T ss_pred HHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEECCC
Confidence 999999987 58999999999999999999999999999888764
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=98.37 E-value=3.5e-06 Score=74.22 Aligned_cols=129 Identities=12% Similarity=0.115 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHhhh-hchhhccccchHHHHHHHHHhhcChhhHHHHHHHhchhhhhhCCCchhhHHHH
Q 015984 224 ALSAAVTCTILAAAGPQRSRVLATLY-KDERCSKLKIYPILQKVYLERILRKPEIDAFAEELKPHQKALLPDNFTVLDRA 302 (397)
Q Consensus 224 ~L~~av~~~ILa~~~~~rs~ll~~l~-~d~~~~~l~~~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~~~~d~~~~L~~~ 302 (397)
....+++.++.+|....=.+++.... +.=+..+-+++..|.+.|.. +++..|...-..+. .+. ..+.+-
T Consensus 25 ~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~-----G~~~~y~~~~~~~p-~L~----~~~~~K 94 (169)
T 3chm_A 25 ALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAH-----GTWGDYKCNATRLP-HLS----PDQILK 94 (169)
T ss_dssp GHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHH-----CCHHHHHHHGGGSC-CCC----HHHHHH
T ss_pred HHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhc-----CCHHHHHHhHHhCc-chH----HHHHHH
Confidence 34468888999886555555553211 11011224567788888865 77777765322221 111 333333
Q ss_pred HHHHHHHHHHhhccccCHHHHHHHhCCC-hHHHHHHHH-HhHhcCceEEEeccCCcEEEECC
Q 015984 303 MIEHNLLSASKLYTNISFEELGTLLGIA-PQKAEKIAS-RMIFEDRMRGSIDQVEAVIHFED 362 (397)
Q Consensus 303 v~EhNl~~is~~Y~~Isl~~La~ll~ls-~~~~E~~ls-~mI~~grl~gkIDQv~giV~f~~ 362 (397)
++.--+.....--+.|+++.|++.++++ .+++|..+. ++|..|.|.|+|||+++.|+..|
T Consensus 95 lrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~ 156 (169)
T 3chm_A 95 LKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPF 156 (169)
T ss_dssp HHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEE
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEe
Confidence 4433444444347999999999999999 999999999 99999999999999999988876
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.19 E-value=2.3e-05 Score=72.45 Aligned_cols=203 Identities=13% Similarity=0.080 Sum_probs=122.9
Q ss_pred HHHHHhhcCChHHHHHHHHHhcc------cc-cCcchHHH--HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcCC
Q 015984 143 IARLYLEDDDAVNAEAFINKASF------LV-SSSQQEVL--NLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGD 213 (397)
Q Consensus 143 i~Rl~L~~~d~~~A~~~l~ka~~------~~-~~~~~~~l--~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~~~~~~ 213 (397)
..+-.++.+|+.++...+.+++. .. ......++ --..|+.++++....+| .++...|..-+..+-. .
T Consensus 13 ~L~~~~~~~d~~~~~~lL~~lk~~L~~~~~~~p~~~~~~~~~ar~vyE~~a~~al~~~D-~~~F~~~~~qLk~~Y~---~ 88 (229)
T 4b0z_A 13 HLADLYDRKDWNACKKELLKLKVELAKQNLFVPTSDKEKASFARNVFEYGVLVSIQTCD-IESFARYASQVIPFYH---D 88 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSSCCSCHHHHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHS---S
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHH---c
Confidence 34445678999999999998742 11 12223333 23555566666555555 4555555444433221 1
Q ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCcchHHHHhhhhchhhccccc---hHHHHHHHHHhhcChhhHHHHHHHhchhhhh
Q 015984 214 ETIDEEALEQALSAAVTCTILAAAGPQRSRVLATLYKDERCSKLKI---YPILQKVYLERILRKPEIDAFAEELKPHQKA 290 (397)
Q Consensus 214 ~~~~~~~~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d~~~~~l~~---~~~L~k~f~~~ii~~~~l~~F~~~L~~h~~~ 290 (397)
...+.+.+..++.+-+++.++.+..++++..+..+.......+-|. .-.|.++..+ ++..+|-+.++.+...
T Consensus 89 ~~~~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~-----GnY~kff~l~~~~p~~ 163 (229)
T 4b0z_A 89 SLVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVME-----GAFDKVASMIRSCNFP 163 (229)
T ss_dssp CCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHT-----TCHHHHHHHHHTCCCG
T ss_pred cCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHc-----CCHHHHHHHHhcCccc
Confidence 1222234556888888888887766777777777654322222222 2234444443 6666776555433211
Q ss_pred hCCCchhhHHHHHHHHHHHHHHhhccccCHHHHHHHhCC-ChHHHHHHHHHhHhcCceEEEeccCCcEEEECC
Q 015984 291 LLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 362 (397)
Q Consensus 291 ~~~d~~~~L~~~v~EhNl~~is~~Y~~Isl~~La~ll~l-s~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~ 362 (397)
....-...|..+++..-+..+++.|.+|+++.+++.||+ ++++++..+.+. | =.|+ +|.|+|..
T Consensus 164 ~~~~~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~---g---w~i~--dg~i~F~~ 228 (229)
T 4b0z_A 164 EFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEER---G---WDIR--DGVIYFPK 228 (229)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHH---T---CEEE--TTEEECC-
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHc---C---CEEe--CCEEecCC
Confidence 111112567788888889999999999999999999999 578888888763 2 1333 77788864
No 12
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.58 E-value=0.0011 Score=53.93 Aligned_cols=113 Identities=11% Similarity=-0.020 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchH
Q 015984 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (397)
Q Consensus 94 q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~ 173 (397)
..+.+...+|.+|...|++++|...+.....-. ...-+.......+.....+|...+++.+|..++.++.......+++
T Consensus 7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 85 (164)
T 3ro3_A 7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 85 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-HHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 446778899999999999999999987754321 1222444567888999999999999999999999998877665677
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 174 ~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
......+...|.++...++|.+|..+|.++....
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 119 (164)
T 3ro3_A 86 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 119 (164)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 7778888899999999999999999998888753
No 13
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.57 E-value=0.0014 Score=53.41 Aligned_cols=112 Identities=12% Similarity=0.020 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHH
Q 015984 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (397)
Q Consensus 95 ~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~ 174 (397)
.+.....+|.+|...|++++|.+.+.....-. ...-+.......+.....++...+++.+|..+++++.......+++.
T Consensus 48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 126 (164)
T 3ro3_A 48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 126 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchH
Confidence 34677889999999999999999988754322 11224445788889999999999999999999999987765555666
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 175 l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
.....+...|.++...++|.+|..+|.++....
T Consensus 127 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 127 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 777888889999999999999999998888753
No 14
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.49 E-value=0.0089 Score=55.56 Aligned_cols=188 Identities=15% Similarity=0.037 Sum_probs=126.9
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchhhhHHHH---HHHHHHh-CCCChHHHHHHHHHHHHhhccccchHHHH
Q 015984 19 EQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLL---QTFAQEL-GRLEPETQKEIANYTLAQIQPRVVSFEEQ 94 (397)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~---~~~~~~l-~~l~~~~~~~~~~~~l~~~~~~~~~~e~q 94 (397)
..+...+...+..++.+....+++.+....-..--.++++ ..+.... ..-..+..++....+++...+..-.+ .
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~--~ 153 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY--Q 153 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTT--H
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHH--H
Confidence 3444455666677777777777777765433222222222 1122222 22244555666677777543333333 2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHH
Q 015984 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (397)
Q Consensus 95 ~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~ 174 (397)
.+.+...||.+|...|++++|...+.....-......+......++.....+|...+++.+|..+++++.......++..
T Consensus 154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~ 233 (293)
T 3u3w_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMA 233 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHH
Confidence 34677889999999999999999988865321001124556788999999999999999999999999887665444555
Q ss_pred HHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHhhh
Q 015984 175 LNLQYKVCYARILDLKR-KFLEAALRYYDISQIQK 208 (397)
Q Consensus 175 l~~~~~~~~~~~~~~~r-~f~~Aa~~y~e~~~~~~ 208 (397)
.....+...|.++...+ +|.+|-.+|..+...+.
T Consensus 234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~ 268 (293)
T 3u3w_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFD 268 (293)
T ss_dssp THHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 56778888999999999 57999999988887543
No 15
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.35 E-value=0.02 Score=52.25 Aligned_cols=113 Identities=11% Similarity=-0.016 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchH
Q 015984 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (397)
Q Consensus 94 q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~ 173 (397)
..+.....+|.+|...|++++|...+.....-. .+.-+.......+.....++...+++.+|..+++++.......+++
T Consensus 181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 259 (338)
T 3ro2_A 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR 259 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcch
Confidence 345677889999999999999999988754322 1122344567788999999999999999999999998776655667
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 174 ~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
......+...|.++...++|.+|..+|.++....
T Consensus 260 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 293 (338)
T 3ro2_A 260 AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 293 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 7778888889999999999999999998888754
No 16
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.31 E-value=0.017 Score=49.32 Aligned_cols=134 Identities=11% Similarity=0.037 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCc-hh-HHHHHHHHHHHHHh
Q 015984 71 ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVID-DT-FRLSKCVQIARLYL 148 (397)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~-~~-~kle~~L~i~Rl~L 148 (397)
+.-......+++....... ....+.....+|.+|...|++++|...+.....-. +..+ +. .....+.....++.
T Consensus 43 ~~A~~~~~~al~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~lg~~~~ 118 (203)
T 3gw4_A 43 DEARASFQALQQQAQKSGD--HTAEHRALHQVGMVERMAGNWDAARRCFLEERELL--ASLPEDPLAASANAYEVATVAL 118 (203)
T ss_dssp HHHHHHHHHHHHHHHTTCC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCccHHHHHHHHHHHHHHHH
Confidence 4445555666665544332 23345778899999999999999999988754321 1223 23 56788899999999
Q ss_pred hcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 015984 149 EDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (397)
Q Consensus 149 ~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~ 208 (397)
..+++.+|..++.++.......+++......+...|.++...++|.+|..+|.++.....
T Consensus 119 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 119 HFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 999999999999998876655566766777788899999999999999999999888643
No 17
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.28 E-value=0.04 Score=52.16 Aligned_cols=114 Identities=11% Similarity=-0.016 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcch
Q 015984 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (397)
Q Consensus 93 ~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~ 172 (397)
...+.....+|.+|...|++++|...+.....-. .+.-+.......+.....+|...+++.+|..+++++.......++
T Consensus 184 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 184 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA-KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC
Confidence 3345678889999999999999999988754322 122234456778899999999999999999999999877665556
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
+......+...|.++...++|.+|..+|.++....
T Consensus 263 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 263 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 67778888889999999999999999999888764
No 18
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=97.25 E-value=0.01 Score=54.02 Aligned_cols=190 Identities=14% Similarity=0.088 Sum_probs=120.9
Q ss_pred hhHhHHHHHHHHHHhhcCCCHHHHHHHHHHHhc--------CCcchhhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhhc
Q 015984 14 QRQKIEQYKHILSSVISSNDIVQAKKFIDHMLS--------DDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQ 85 (397)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~sr~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~ 85 (397)
+......|..+-......++.+.-..+.+..+. +..........+..+...... .+........+++...
T Consensus 23 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--~~~A~~~~~~al~~~~ 100 (311)
T 3nf1_A 23 IPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--YKDAANLLNDALAIRE 100 (311)
T ss_dssp SCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHHHH
Confidence 334556677777777777777655555555443 222222222222222222222 3344555555555432
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCC--CchhHHHHHHHHHHHHHhhcCChHHHHHHHHHh
Q 015984 86 PRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV--IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKA 163 (397)
Q Consensus 86 ~~~~~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~--~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka 163 (397)
.....-..........+|.+|...|++++|...+....--. .+. -+.......+....++|...+++..|..++.++
T Consensus 101 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 101 KTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIR-EKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHH-HHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11000113345677889999999999999999998754321 000 133456788899999999999999999999998
Q ss_pred cccccCc--chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 164 SFLVSSS--QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 164 ~~~~~~~--~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
....... ++.......+...|.++...++|.+|..+|.++...
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 224 (311)
T 3nf1_A 180 LEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR 224 (311)
T ss_dssp HHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7764322 223344567778899999999999999999988874
No 19
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=97.25 E-value=0.024 Score=53.70 Aligned_cols=113 Identities=11% Similarity=0.006 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHH
Q 015984 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (397)
Q Consensus 95 ~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~ 174 (397)
.+.....+|.+|...|++++|...+.....-. ...-+.......+.....+|...+++.+|..++.++.......+++.
T Consensus 226 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 304 (406)
T 3sf4_A 226 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence 34677889999999999999999998754322 11223445688899999999999999999999999987766555666
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 015984 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (397)
Q Consensus 175 l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~ 208 (397)
.....+...|.++...++|.+|..+|.++.....
T Consensus 305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 338 (406)
T 3sf4_A 305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 338 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 6677888899999999999999999999887643
No 20
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.24 E-value=0.019 Score=55.04 Aligned_cols=113 Identities=10% Similarity=-0.081 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchH
Q 015984 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (397)
Q Consensus 94 q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~ 173 (397)
..+.....+|.+|...|++++|...+.....-. ...-+.......+....++|...+++.+|..++.++.......+++
T Consensus 221 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 299 (411)
T 4a1s_A 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIA-REFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGER 299 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCH
Confidence 345677889999999999999999988754321 1122344567788999999999999999999999988776655566
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 174 ~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
......+...|.++...++|.+|..+|.++....
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 333 (411)
T 4a1s_A 300 EVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIA 333 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 6677888899999999999999999998888754
No 21
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=97.21 E-value=0.013 Score=53.53 Aligned_cols=111 Identities=11% Similarity=0.000 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHH
Q 015984 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (397)
Q Consensus 95 ~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~ 174 (397)
.+.....+|.+|...|++++|.+.+.....-. ...-+.......+....++|...+++.+|..+++++.......+++.
T Consensus 222 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 300 (338)
T 3ro2_A 222 ERRAYSNLGNAYIFLGEFETASEYYKKTLLLA-RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcH
Confidence 34677889999999999999999998754322 11223445788889999999999999999999999987765555566
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 175 l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.....+...|.++...++|.+|..+|.++...
T Consensus 301 ~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 67777888999999999999999999998875
No 22
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=97.07 E-value=0.015 Score=49.68 Aligned_cols=112 Identities=12% Similarity=-0.019 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcc-hH
Q 015984 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ-QE 173 (397)
Q Consensus 95 ~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~-~~ 173 (397)
.+.+...+|.+|...|++++|...+.....-. ...-++......+.....+|...+++..|..++.++.......+ ++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 103 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQA-QKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH
Confidence 35677889999999999999999998754322 12224456788899999999999999999999999887765444 56
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 174 ~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
......+...|.++...++|.+|..+|.++....
T Consensus 104 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYA 137 (203)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 5677788889999999999999999999988753
No 23
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=97.01 E-value=0.021 Score=54.78 Aligned_cols=111 Identities=9% Similarity=-0.035 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
+.....+|.+|...|++++|...+.....-. ...-+.......+....++|...+++.+|..+++++.......+++..
T Consensus 263 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 341 (411)
T 4a1s_A 263 RRANSNLGNSHIFLGQFEDAAEHYKRTLALA-VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIG 341 (411)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHH
Confidence 4577889999999999999999998754322 122234456888899999999999999999999999877655555666
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
....+...|.++...++|.+|..+|.++...+
T Consensus 342 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 342 EARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 67788889999999999999999999998863
No 24
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.00 E-value=0.022 Score=52.86 Aligned_cols=105 Identities=10% Similarity=-0.078 Sum_probs=82.4
Q ss_pred HHHHHHHhhhcHHHHHHHHhhchhccCCCCCch-hHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHH
Q 015984 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD-TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (397)
Q Consensus 101 ~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~-~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~ 179 (397)
..+..+...|+|++|.+.+..+.... ...++ ...+.++..+.-+|...+++..|..+++++.......+++...+..
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKE--EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccc--cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 34677888999999999999866432 22222 2236666678888999999999999999998865555566666777
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 180 KVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 180 ~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
+...|.+|...++|.+|-.+|..+....
T Consensus 158 ~~~lg~~y~~~g~~~~A~~~~~~al~~~ 185 (293)
T 3u3w_A 158 ENAIANIYAENGYLKKGIDLFEQILKQL 185 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8889999999999999999999988754
No 25
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.97 E-value=0.034 Score=53.33 Aligned_cols=101 Identities=7% Similarity=-0.071 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCch-hHHHHHHHHHHHHHhh
Q 015984 71 ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD-TFRLSKCVQIARLYLE 149 (397)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~-~~kle~~L~i~Rl~L~ 149 (397)
+...+....+++...... -....+.....||.+|...|++++|.+.+.....-. +...+ ......+....++|..
T Consensus 201 ~~A~~~~~~al~~~~~~~--~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~l~~~~~~ 276 (383)
T 3ulq_A 201 EDAISHFQKAYSMAEAEK--QPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF--EESNILPSLPQAYFLITQIHYK 276 (383)
T ss_dssp HHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HhhccchhHHHHHHHHHHHHHH
Confidence 334455555555443222 123345677889999999999999999988754311 11222 4458889999999999
Q ss_pred cCChHHHHHHHHHhcccccCcchHHH
Q 015984 150 DDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 150 ~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
.+++.+|..+++++.......+++..
T Consensus 277 ~g~~~~A~~~~~~al~~~~~~~~~~~ 302 (383)
T 3ulq_A 277 LGKIDKAHEYHSKGMAYSQKAGDVIY 302 (383)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999998766543334433
No 26
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.95 E-value=0.029 Score=52.02 Aligned_cols=133 Identities=14% Similarity=0.055 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcC
Q 015984 72 TQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDD 151 (397)
Q Consensus 72 ~~~~~~~~~l~~~~~~~~~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~ 151 (397)
...+.....++... ......+.......++.+|...|++++|...+....... ....+.......+..+..+|...+
T Consensus 93 ~A~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~~ 169 (293)
T 2qfc_A 93 EIYNKVWNELKKEE--YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQ-LTGIDVYQNLYIENAIANIYAENG 169 (293)
T ss_dssp HHHHHHHHHHHTCC--CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTC-CCSSCTTHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcccc--CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH-hcCCchHHHHHHHHHHHHHHHHcC
Confidence 33444444444332 233344555666779999999999999999987744222 122344456788999999999999
Q ss_pred ChHHHHHHHHHhcccccCc-chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 152 DAVNAEAFINKASFLVSSS-QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 152 d~~~A~~~l~ka~~~~~~~-~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
++.+|..+++++....... +++......+...|.++...++|.+|-.+|.++....
T Consensus 170 ~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~ 226 (293)
T 2qfc_A 170 YLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226 (293)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999998554322 3455555778889999999999999999999888753
No 27
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.92 E-value=0.023 Score=52.81 Aligned_cols=110 Identities=13% Similarity=0.004 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhhchh-ccCCCCCchhHHHHHHHHHHHHHhhc-CChHHHHHHHHHhcccccCcch
Q 015984 95 VLIIREKLADLYESEQQWSKAAQMLSGIDL-DSGMRVIDDTFRLSKCVQIARLYLED-DDAVNAEAFINKASFLVSSSQQ 172 (397)
Q Consensus 95 ~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~-et~~~~~~~~~kle~~L~i~Rl~L~~-~d~~~A~~~l~ka~~~~~~~~~ 172 (397)
.+.....++.+|...|++++|...+....- .. ..-+.......+.....+|... +++.+|..+++++.......++
T Consensus 76 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~--~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 76 AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFT--HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 356678899999999999999988876432 11 1112334577888999999996 9999999999999887654444
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
+......+.-.|.++...++|.+|..+|..+...
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4444566777899999999999999999999885
No 28
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.87 E-value=0.011 Score=46.28 Aligned_cols=104 Identities=11% Similarity=0.016 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccC-cchHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS-SQQEV 174 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~-~~~~~ 174 (397)
+.....+|..|...|+|.+|...+.....-. . .-...+...+.+|...+++..|..+++++...... .+++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD---P----TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---C----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 4566789999999999999999998854321 1 12467888899999999999999999998776543 23444
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 175 l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.....+...|.++...++|.+|..+|..+...
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 45667778899999999999999999988875
No 29
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=96.87 E-value=0.05 Score=50.37 Aligned_cols=186 Identities=15% Similarity=0.011 Sum_probs=113.5
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchhhhHHHHHH---HHHHhCCC-ChHHHHHHHHHHHHhhccccchHHHHH
Q 015984 20 QYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQT---FAQELGRL-EPETQKEIANYTLAQIQPRVVSFEEQV 95 (397)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~---~~~~l~~l-~~~~~~~~~~~~l~~~~~~~~~~e~q~ 95 (397)
.+...+...+..++.+....++...+...-..-.....+.. +....... ..+...+....+++......-.+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~--~ 154 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ--N 154 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH--H
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH--H
Confidence 44445555556666665555555544322111111111111 11111122 333444444555554433322222 3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
+.+...+|.+|...|+|++|...+.....-.....-+......++.....+|...+++.+|..+++++.......+++..
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 56778899999999999999999987552110011122234478899999999999999999999998776543345555
Q ss_pred HHHHHHHHHHHHHHHHhHHHH-HHHHHHHHHhh
Q 015984 176 NLQYKVCYARILDLKRKFLEA-ALRYYDISQIQ 207 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~A-a~~y~e~~~~~ 207 (397)
....+...|.++...++|.+| ..+|..+...+
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~ 267 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 677888899999999999999 66676666543
No 30
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=96.81 E-value=0.0044 Score=52.02 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=71.9
Q ss_pred HHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHH
Q 015984 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYK 180 (397)
Q Consensus 101 ~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~ 180 (397)
.|+.+|...|++++|...++.... .+.+.-..++...++|...+++.+|..+++++...-.. ++ ..+
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~-------~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~--~~----~a~ 68 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTP-------SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER--DP----KAH 68 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSC-------SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcc-------cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHH
Confidence 478899999999999988877331 33455667788999999999999999999998776443 33 356
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 181 VCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 181 ~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
...|.++...++|.+|-.+|..+...
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~~ 94 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVEL 94 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHh
Confidence 67889999999999999999999885
No 31
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=96.80 E-value=0.0083 Score=48.83 Aligned_cols=104 Identities=13% Similarity=0.056 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccC-cchHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS-SQQEV 174 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~-~~~~~ 174 (397)
+.-...|+..|...|+|++|...+.... +. ++ .-...+.....+|+..+++.+|...++++...... ..++.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al-~~-----~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 80 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAI-EL-----DP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHH-HH-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-Hh-----CC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence 3445679999999999999999998743 21 11 12567888999999999999999999998765432 23555
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 175 l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
....-+...|..+...++|.+|-.+|..+...
T Consensus 81 ~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66677778899999999999999999888764
No 32
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=96.75 E-value=0.056 Score=49.01 Aligned_cols=112 Identities=13% Similarity=-0.033 Sum_probs=83.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhhchhccC-CCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCc---
Q 015984 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSG-MRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS--- 170 (397)
Q Consensus 95 ~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~-~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~--- 170 (397)
.......+|.+|...|++++|...+.....-.. ...-+.......+...+++|...+++.+|..+++++.......
T Consensus 152 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 231 (311)
T 3nf1_A 152 VAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 456778899999999999999999988653210 0011234567888999999999999999999999987542110
Q ss_pred ----------------------------------------chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 171 ----------------------------------------QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 171 ----------------------------------------~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.+.......+...|.++...++|.+|..+|.++...
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 011234556777899999999999999999888774
No 33
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.69 E-value=0.12 Score=45.72 Aligned_cols=135 Identities=12% Similarity=-0.023 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccC-CCCCchhHHHHHHHHHHHHHhh
Q 015984 71 ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSG-MRVIDDTFRLSKCVQIARLYLE 149 (397)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~-~~~~~~~~kle~~L~i~Rl~L~ 149 (397)
+...+....+++........-..........+|.+|...|++++|...+.....-.. ...-++......+....++|..
T Consensus 102 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 181 (283)
T 3edt_B 102 KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLK 181 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 344555555555432110011123456778899999999999999999887653210 0111234567888999999999
Q ss_pred cCChHHHHHHHHHhcccccCc-------------------------------------------chHHHHHHHHHHHHHH
Q 015984 150 DDDAVNAEAFINKASFLVSSS-------------------------------------------QQEVLNLQYKVCYARI 186 (397)
Q Consensus 150 ~~d~~~A~~~l~ka~~~~~~~-------------------------------------------~~~~l~~~~~~~~~~~ 186 (397)
.+++.+|..++.++....... .+..-....+...|.+
T Consensus 182 ~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~ 261 (283)
T 3edt_B 182 QGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGAL 261 (283)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 999999999999976542110 0112344567778999
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q 015984 187 LDLKRKFLEAALRYYDISQ 205 (397)
Q Consensus 187 ~~~~r~f~~Aa~~y~e~~~ 205 (397)
+...++|.+|..+|.++..
T Consensus 262 ~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 262 YRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999988765
No 34
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.61 E-value=0.025 Score=53.01 Aligned_cols=112 Identities=14% Similarity=0.041 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCC-chhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcch
Q 015984 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVI-DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (397)
Q Consensus 94 q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~-~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~ 172 (397)
..+.....++.+|...|++++|...+..... . +... +.......+.....+|.. +++.+|..+++++.......++
T Consensus 74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~-l-~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~ 150 (307)
T 2ifu_A 74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASV-M-YVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER 150 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHH-H-HHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-H-HHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC
Confidence 3456778899999999999999998876432 1 1122 333467788899999988 9999999999999887655455
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 015984 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (397)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~ 208 (397)
+......+.-.|.++...++|.+|..+|..+.....
T Consensus 151 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 186 (307)
T 2ifu_A 151 LRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYK 186 (307)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 666677788889999999999999999999887643
No 35
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=96.59 E-value=0.027 Score=54.09 Aligned_cols=113 Identities=11% Similarity=-0.048 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCc--hhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCc
Q 015984 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVID--DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (397)
Q Consensus 93 ~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~--~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~ 170 (397)
...+.....+|.+|...|++.+|...+....--. +..+ .......+.....+|...+++.+|..+++++.......
T Consensus 140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 217 (383)
T 3ulq_A 140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIY--KEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAE 217 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHc
Confidence 3456888999999999999999999888754321 2222 34567888999999999999999999999998877666
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
+++......+...|.++...++|.+|-.+|.++....
T Consensus 218 ~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~ 254 (383)
T 3ulq_A 218 KQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVF 254 (383)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 6777778888889999999999999999999988854
No 36
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.58 E-value=0.031 Score=44.93 Aligned_cols=101 Identities=12% Similarity=-0.086 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
+.....+|..+...|+|.+|.+.+....... -++......+......|...+++.+|..+++++...... +
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~--- 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD----ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG--D--- 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC----CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC--C---
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc----ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc--C---
Confidence 4555789999999999999999999865321 133346788999999999999999999999998765332 2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
...+...|.++...++|.+|...|..+...
T Consensus 99 -~~~~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 -VKALYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 234556888999999999999999999875
No 37
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=96.54 E-value=0.028 Score=50.10 Aligned_cols=113 Identities=17% Similarity=0.093 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCC--CchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCc-
Q 015984 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV--IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS- 170 (397)
Q Consensus 94 q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~--~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~- 170 (397)
..+.....+|.+|...|++++|...+....--. .+. -++......+.....+|...+++.+|..++.++.......
T Consensus 41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 119 (283)
T 3edt_B 41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIR-EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL 119 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH-HHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHc
Confidence 345777889999999999999999998855321 011 2334678889999999999999999999999987765321
Q ss_pred -chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 171 -QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 171 -~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
++.......+...|.++...++|.+|-.+|.++....
T Consensus 120 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 157 (283)
T 3edt_B 120 GKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIY 157 (283)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2223345677778999999999999999999888753
No 38
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.50 E-value=0.024 Score=46.04 Aligned_cols=102 Identities=13% Similarity=-0.037 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcc
Q 015984 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (397)
Q Consensus 92 e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~ 171 (397)
..+.+.....++..|...|+|++|.+.+.....-. + .-.+.+......|...+++.+|...++++...-..
T Consensus 9 nP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~------p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-- 79 (126)
T 4gco_A 9 NPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD------P-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-- 79 (126)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh--
Confidence 34455666778999999999999999998743211 1 22568888999999999999999999998765332
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
++ ..+...|.++...++|.+|-..|..+...
T Consensus 80 ~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 80 FI----KGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hh----HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 22 24567899999999999999999999986
No 39
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.47 E-value=0.042 Score=52.75 Aligned_cols=115 Identities=12% Similarity=-0.067 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCc-hhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCc
Q 015984 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVID-DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (397)
Q Consensus 92 e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~-~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~ 170 (397)
....+.....||.+|...|++.+|...+....--. .+..+ .......+.....+|...+++.+|..++.++.......
T Consensus 137 ~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~ 215 (378)
T 3q15_A 137 DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY-QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDI 215 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Confidence 34567888999999999999999999887743221 11212 33567888899999999999999999999998877655
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
+++......+...|.++...++|.+|-.+|.++....
T Consensus 216 ~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 252 (378)
T 3q15_A 216 QNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVS 252 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 6777778888899999999999999999999988753
No 40
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.43 E-value=0.047 Score=43.03 Aligned_cols=101 Identities=10% Similarity=-0.072 Sum_probs=78.0
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHH
Q 015984 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (397)
Q Consensus 100 ~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~ 179 (397)
..+|..+...|+|++|.+.+..+.... . +.....+.+......+...+++.+|..++.++.......+ .....
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--p--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~~ 78 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY--P--NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD---KAAGG 78 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC--S--SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---THHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC--C--CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc---ccHHH
Confidence 568899999999999999999865432 1 2233457888899999999999999999999876543311 12234
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 180 KVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 180 ~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
....|.++...++|.+|...|..+...+
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 4567888999999999999999988863
No 41
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=96.38 E-value=0.3 Score=45.50 Aligned_cols=108 Identities=10% Similarity=0.000 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHH
Q 015984 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (397)
Q Consensus 95 ~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~ 174 (397)
.+.....+|.+|+. |++++|...+....--. ...-+.......+.....+|...+++.+|..++.++.......+++.
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF-ENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYP 192 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH-HhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChh
Confidence 45677889999999 99999999987743211 01112334578889999999999999999999999987765433333
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015984 175 LNLQYKVCYARILDLKRKFLEAALRYYDIS 204 (397)
Q Consensus 175 l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~ 204 (397)
....++...|..+...++|.+|..+|.+..
T Consensus 193 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 193 TCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 445577778888888899999999998887
No 42
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=96.37 E-value=0.015 Score=55.98 Aligned_cols=113 Identities=16% Similarity=0.055 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcc
Q 015984 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (397)
Q Consensus 92 e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~ 171 (397)
....+.+...||.+|...|+|++|.+.+.....-. .+.-+.......+.....+|...+++.+|..+++++.......+
T Consensus 178 ~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~ 256 (378)
T 3q15_A 178 SIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELA-MDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV 256 (378)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC
Confidence 44567788899999999999999999887754321 11223345778889999999999999999999999987655444
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
+|.. .......|.++...++|.+|..+|.++...
T Consensus 257 ~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 290 (378)
T 3q15_A 257 PDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDH 290 (378)
T ss_dssp GGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5555 677788999999999999999999998886
No 43
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=96.22 E-value=0.38 Score=39.42 Aligned_cols=167 Identities=13% Similarity=0.056 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHhC-CCChHHHHHHHHHHHHhhccccchHHHHH
Q 015984 17 KIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELG-RLEPETQKEIANYTLAQIQPRVVSFEEQV 95 (397)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~~l~-~l~~~~~~~~~~~~l~~~~~~~~~~e~q~ 95 (397)
....|..+.......++.+.-....+..+...-.-. .+...+...+. .=..+...+....+++.. +..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~------- 75 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV---DVALHLGIAYVKTGAVDRGTELLERSLADA-PDN------- 75 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC-------
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh---HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCC-------
Confidence 344455555555555665555555555443322111 11222222221 112233344444444431 221
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
..+...+|.+|...|++++|.+.+.....-. . .-...+...++++...+++.+|..+++++...... +
T Consensus 76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~--- 143 (186)
T 3as5_A 76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEAN--P-----INFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN--E--- 143 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C---
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--c-----HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc--c---
Confidence 2556778999999999999999998865322 1 12467788899999999999999999998765432 2
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
...+...|.++...++|.+|..+|..+....
T Consensus 144 -~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 144 -GKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2355678888999999999999998887754
No 44
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=96.18 E-value=0.06 Score=41.73 Aligned_cols=101 Identities=10% Similarity=-0.063 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcch
Q 015984 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (397)
Q Consensus 93 ~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~ 172 (397)
.........+|..+...|++++|...+....... . .-...+...+.++...+++..|..+++++...... +
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~ 79 (131)
T 2vyi_A 9 SAEAERLKTEGNEQMKVENFEAAVHFYGKAIELN--P-----ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA--Y 79 (131)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C
T ss_pred hhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC--C-----CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc--C
Confidence 3345667889999999999999999998865322 1 11567888899999999999999999998775332 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
+ ..+...|.++...++|.+|...|..+...
T Consensus 80 ~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 80 S----KAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp H----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 2 35567888999999999999999998875
No 45
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=96.16 E-value=0.36 Score=42.43 Aligned_cols=99 Identities=15% Similarity=0.110 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.+...+|.+|...|++++|.+.+..... . . ........+...+.++...+++.+|..+++++...... +
T Consensus 106 ~~~~~la~~~~~~g~~~~A~~~~~~~~~-~--~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~---- 174 (252)
T 2ho1_A 106 RVLNNYGGFLYEQKRYEEAYQRLLEASQ-D--T--LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN--Q---- 174 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTT-C--T--TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--C----
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh-C--c--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc--c----
Confidence 5667889999999999999999888553 1 0 11234567788889999999999999999998665432 2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
...+...|.++...++|.+|...|..+...
T Consensus 175 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 204 (252)
T 2ho1_A 175 PSVALEMADLLYKEREYVPARQYYDLFAQG 204 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 234567888889999999999888887764
No 46
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.13 E-value=0.3 Score=45.44 Aligned_cols=160 Identities=13% Similarity=0.071 Sum_probs=94.3
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHhCCCC-hHHHHHHHHHHHHh-hccccchHHHHH
Q 015984 18 IEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLE-PETQKEIANYTLAQ-IQPRVVSFEEQV 95 (397)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~~l~~l~-~~~~~~~~~~~l~~-~~~~~~~~e~q~ 95 (397)
.+...-+....+..+..+....-++. .+-+- -+.+..+...+...+ .+..++..+.++.. +.|..
T Consensus 34 ~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~---~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~------- 100 (291)
T 3mkr_A 34 VERDVFLYRAYLAQRKYGVVLDEIKP---SSAPE---LQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTN------- 100 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHH---HHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSC-------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHhcc---cCChh---HHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCC-------
Confidence 44434445556666765443332222 22232 344445555554433 33344444444432 12333
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
......+|.+|...|++++|.+.+.. + .-.+.+...+++++..|++..|...++++...-.. +.
T Consensus 101 ~~~~~~la~~~~~~g~~~~Al~~l~~-~-----------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~--~~-- 164 (291)
T 3mkr_A 101 TTFLLMAASIYFYDQNPDAALRTLHQ-G-----------DSLECMAMTVQILLKLDRLDLARKELKKMQDQDED--AT-- 164 (291)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTT-C-----------CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHhC-C-----------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC--cH--
Confidence 24567889999999999999999887 1 12357788888999999999999999998765322 11
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
...+......++...++|.+|...|.++...
T Consensus 165 ~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~ 195 (291)
T 3mkr_A 165 LTQLATAWVSLAAGGEKLQDAYYIFQEMADK 195 (291)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh
Confidence 1222222233444557888888888887775
No 47
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=96.11 E-value=0.51 Score=40.18 Aligned_cols=168 Identities=11% Similarity=-0.006 Sum_probs=105.6
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhhccccchHHHHHHH
Q 015984 18 IEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLI 97 (397)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~e~q~~~ 97 (397)
+..|..+.......++.+.-..+++..+...-.-......+..+....+. .+...+....+++.. +.. ..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~a~~~~-~~~-------~~ 77 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKV--NDKAQESFRQALSIK-PDS-------AE 77 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHC-TTC-------HH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCC--hHHHHHHHHHHHHhC-CCC-------hH
Confidence 44555555556666666554444444442211111112222222222222 233344445554432 221 24
Q ss_pred HHHHHHHHHHhh-hcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 98 IREKLADLYESE-QQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 98 l~~~La~~~e~~-~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
....+|.+|... |++++|.+.+..... . . ........+....+++...+++.+|..+++++...... +
T Consensus 78 ~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~--~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~---- 146 (225)
T 2vq2_A 78 INNNYGWFLCGRLNRPAESMAYFDKALA-D--P--TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ--F---- 146 (225)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHT-S--T--TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--C----
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHc-C--c--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--C----
Confidence 557799999999 999999999988654 1 1 11234678888999999999999999999998765332 2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
...+...|.++...++|.+|...|..+...
T Consensus 147 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 176 (225)
T 2vq2_A 147 PPAFKELARTKMLAGQLGDADYYFKKYQSR 176 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 235567888899999999999999888875
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=96.08 E-value=0.64 Score=40.47 Aligned_cols=180 Identities=11% Similarity=-0.018 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHhCCCChHHHHHHHHHHHHhhccccchHHHHHH
Q 015984 17 KIEQYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVL 96 (397)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~e~q~~ 96 (397)
..+.|..+-......++.+.-..+.+..+... .-......+.......+ ..+..++....+++........+ ....
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~--~~~~A~~~~~~a~~~~~~~~~~~-~~~~ 79 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKG--EYETAISTLNDAVEQGREMRADY-KVIS 79 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHTTCCH-HHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcc--cHHHHHHHHHHHHHhCcccccch-HHHH
Confidence 45667777777777777655544554444332 22222222222222222 23344555555555432211111 1225
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCC------------------C-chhHHHHHHHHHHHHHhhcCChHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV------------------I-DDTFRLSKCVQIARLYLEDDDAVNAE 157 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~------------------~-~~~~kle~~L~i~Rl~L~~~d~~~A~ 157 (397)
.....+|.+|...|++++|...+.....-..... + .+....+.+.....++...+++..|.
T Consensus 80 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~ 159 (258)
T 3uq3_A 80 KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAV 159 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHH
Confidence 7778899999999999999999887653210000 0 11234566777777888888888888
Q ss_pred HHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 158 AFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 158 ~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.+++++...... ++ ..+...|.++...++|.+|..+|..+...
T Consensus 160 ~~~~~a~~~~~~--~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 202 (258)
T 3uq3_A 160 KAYTEMIKRAPE--DA----RGYSNRAAALAKLMSFPEAIADCNKAIEK 202 (258)
T ss_dssp HHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcc--cH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 888887654332 22 35556777777888888888888777764
No 49
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=96.04 E-value=0.031 Score=47.34 Aligned_cols=98 Identities=8% Similarity=0.009 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
+.+...||.+|...|+|++|.+.+....--. + .-.+.+.....+|...+++.+|...+.++...... ++
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~------p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~--~~-- 73 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD------P-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT--SA-- 73 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch--hH--
Confidence 4677889999999999999999998854221 1 12567888899999999999999999998766543 22
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
......|.++...++|..|...|..+...
T Consensus 74 --~~~~~~~~~~~~~~~~~~a~~~~~~a~~~ 102 (184)
T 3vtx_A 74 --EAYYILGSANFMIDEKQAAIDALQRAIAL 102 (184)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 24455678888999999999999888875
No 50
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=96.02 E-value=0.04 Score=43.25 Aligned_cols=96 Identities=9% Similarity=-0.057 Sum_probs=76.6
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHH
Q 015984 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (397)
Q Consensus 98 l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~ 177 (397)
-...+|..+...|+|++|.+.+....... + .-.+.+...+.+|...+++.+|..+++++...... ++
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~------~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~---- 84 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKRN------P-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT--FI---- 84 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTTC------T-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT--CH----
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC------C-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--ch----
Confidence 34678999999999999999998854221 1 12578889999999999999999999998775432 22
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 178 QYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 178 ~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+|..+|..+...
T Consensus 85 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 85 KGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 35566788899999999999999988875
No 51
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.01 E-value=0.059 Score=45.04 Aligned_cols=100 Identities=9% Similarity=-0.120 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHH
Q 015984 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (397)
Q Consensus 95 ~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~ 174 (397)
.+.....+|..|...|+|++|...+.....-. + .-..++.....+|+..+++..|..+++++...-.. +
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~------p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~-- 78 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA------P-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK--Y-- 78 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C--
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--C--
Confidence 34566789999999999999999998854321 1 12568889999999999999999999998776433 2
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 175 l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
...+...|.++...++|.+|..+|..+....
T Consensus 79 --~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 79 --SKAWSRLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 3356678899999999999999999998864
No 52
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.95 E-value=0.069 Score=40.61 Aligned_cols=98 Identities=15% Similarity=-0.070 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
+.....+|..+...|+|++|.+.+....... . .-...+.....++...+++..|..+++++...... ++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~-- 72 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD---P----HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD--WG-- 72 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---C----CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc--cH--
Confidence 3455778999999999999999998865322 1 12467888899999999999999999998765432 22
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+|...|..+...
T Consensus 73 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 73 --KGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 34566788889999999999999888874
No 53
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.93 E-value=0.11 Score=52.78 Aligned_cols=137 Identities=9% Similarity=0.032 Sum_probs=98.2
Q ss_pred ChHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCch--hHHHHHHHHHHHH
Q 015984 69 EPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD--TFRLSKCVQIARL 146 (397)
Q Consensus 69 ~~~~~~~~~~~~l~~~~~~~~~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~--~~kle~~L~i~Rl 146 (397)
..+....+++.+|+.-..---.--..++.....||.+|...|+|++|..++..... ...+.++. -.-...+...+.+
T Consensus 324 ~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~-i~~~~lG~~Hp~~a~~l~nLa~~ 402 (490)
T 3n71_A 324 LYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVD-GYMKLYHHNNAQLGMAVMRAGLT 402 (490)
T ss_dssp CHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HHHHHSCTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHH
Confidence 34555677777776543222222234668889999999999999999998877432 10122333 3467888999999
Q ss_pred HhhcCChHHHHHHHHHhccccc---CcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 147 YLEDDDAVNAEAFINKASFLVS---SSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 147 ~L~~~d~~~A~~~l~ka~~~~~---~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
|...|++..|+.++.+|..... ..++|...- .....+..+...+.|.+|-..|+.+-+..
T Consensus 403 ~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~-~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 403 NWHAGHIEVGHGMICKAYAILLVTHGPSHPITKD-LEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999876653 334565433 33677778899999999999998887643
No 54
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.082 Score=41.82 Aligned_cols=99 Identities=11% Similarity=-0.087 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
+..-..+|..+...|+|.+|...+.....-. + .-...+......|...+++.+|...++++...-.. ++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~-- 72 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA------P-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN--FV-- 72 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------C-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--cH--
Confidence 3455778999999999999999998754321 1 11478889999999999999999999998776433 22
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
..+...|..+...++|.+|...|..+....
T Consensus 73 --~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 73 --RAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 345668899999999999999999888753
No 55
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.90 E-value=0.015 Score=48.63 Aligned_cols=102 Identities=14% Similarity=0.056 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcc
Q 015984 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (397)
Q Consensus 92 e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~ 171 (397)
..+.......||.+|...|+|++|.+.+.....-. + .-.+.+.....+|...+++.+|..+++++...-..
T Consensus 27 ~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~------p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-- 97 (150)
T 4ga2_A 27 PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ------E-RDPKAHRFLGLLYELEENTDKAVECYRRSVELNPT-- 97 (150)
T ss_dssp HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C-CCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC--
Confidence 34444556789999999999999999998854211 1 12467888999999999999999999998876443
Q ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHHh
Q 015984 172 QEVLNLQYKVCYARILDLKRKFLEAALRYYD-ISQI 206 (397)
Q Consensus 172 ~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e-~~~~ 206 (397)
+++ .+...|.++...++|.+|+..|++ +...
T Consensus 98 ~~~----~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 98 QKD----LVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHH----HHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred CHH----HHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 333 345578888999999999998864 5554
No 56
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.89 E-value=0.085 Score=44.59 Aligned_cols=103 Identities=10% Similarity=-0.028 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCc
Q 015984 91 FEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (397)
Q Consensus 91 ~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~ 170 (397)
...........+|..|...|++++|...+.....-. + .-.++|.....+|...+++..|...+.++...-..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~------P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~- 102 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD------F-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN- 102 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-
Confidence 344555667889999999999999999998865321 1 12457888899999999999999999999877554
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
++. .+...|..+...++|.+|-.+|..+...
T Consensus 103 -~~~----~~~~lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 103 -DYT----PVFHTGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp -CCH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CcH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 332 4556789999999999999999999886
No 57
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.054 Score=52.33 Aligned_cols=111 Identities=7% Similarity=0.015 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
..++..++.++...|++++|.+++.....-. ...-.......++...+++|...|++..|..++.++.......++...
T Consensus 95 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 173 (434)
T 4b4t_Q 95 KVLKTLIEKFEQVPDSLDDQIFVCEKSIEFA-KREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173 (434)
T ss_dssp HHHHHHHHHHCSCCSCHHHHHHHHHHHHHHH-HHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH-HHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchh
Confidence 3566778888889999999998887754322 111122346788899999999999999999999998777666566677
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
...++...|++|...++|..|-..|..+....
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 205 (434)
T 4b4t_Q 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAA 205 (434)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence 88999999999999999999999998887654
No 58
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=95.77 E-value=0.053 Score=50.36 Aligned_cols=110 Identities=13% Similarity=0.085 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCC-chhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVI-DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~-~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
..-.+.+.+|...|+|++|...+..... . .... +.......+.....+|...+++..|..+++++.......+++..
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~-~-~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~ 115 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAAD-Y-QKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHH-H-HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-H-HHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 4445568889999999999998876432 1 1122 33446788899999999999999999999999887665566666
Q ss_pred HHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHhhh
Q 015984 176 NLQYKVCYARILDLK-RKFLEAALRYYDISQIQK 208 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~-r~f~~Aa~~y~e~~~~~~ 208 (397)
....+.-.|.+|... ++|.+|-.+|.++.....
T Consensus 116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~ 149 (292)
T 1qqe_A 116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYA 149 (292)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHH
Confidence 677777889999997 999999999999888643
No 59
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.73 E-value=0.1 Score=42.66 Aligned_cols=99 Identities=14% Similarity=-0.084 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHH
Q 015984 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEV 174 (397)
Q Consensus 95 ~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~ 174 (397)
.+.....+|..+...|+|.+|.+.+....... . .-.+.+.....++...+++..|..+++++...... ++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~---~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~--~~- 81 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELN---P----SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YI- 81 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---T----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH-
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---C----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cH-
Confidence 34566789999999999999999998854322 1 12567888999999999999999999998776432 22
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 175 LNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 175 l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+|..+|..+...
T Consensus 82 ---~~~~~~a~~~~~~~~~~~A~~~~~~a~~~ 110 (166)
T 1a17_A 82 ---KGYYRRAASNMALGKFRAALRDYETVVKV 110 (166)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34567888899999999999999998875
No 60
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.69 E-value=0.087 Score=45.46 Aligned_cols=105 Identities=10% Similarity=-0.054 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCC------Cc---hhHHHHHHHHHHHHHhhcCChHHHHHHHHHhccc
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRV------ID---DTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 166 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~------~~---~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~ 166 (397)
+.....+|..+...|+|.+|...+.....-..... .+ ...+..++.....+|+..+++..|..+++++...
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34556789999999999999999887543210000 00 0113578899999999999999999999998776
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 167 VSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
... + ...+...|.++...++|.+|...|..+...
T Consensus 118 ~p~--~----~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 118 DKN--N----VKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp STT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred Ccc--c----HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 332 2 235567889999999999999999998875
No 61
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=95.57 E-value=0.13 Score=39.33 Aligned_cols=97 Identities=12% Similarity=0.055 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.....+|..|...|++++|.+.+....... . .-...+...+.++...+++.+|..+++++...... ++
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~--- 77 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD--P-----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NA--- 77 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--c-----CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc--cH---
Confidence 455778999999999999999998865322 1 12457788899999999999999999998765322 22
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
......|.++...++|.+|...|.++...
T Consensus 78 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 78 -EAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 24456788889999999999999988875
No 62
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=95.57 E-value=0.12 Score=41.11 Aligned_cols=100 Identities=12% Similarity=-0.032 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
+.....+|..+...|+|++|...+.....-. . .-.+++.....++...+++..|..++.++...... ++
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~--~~-- 77 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN--P-----LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SV-- 77 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC--c-----CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCch--hH--
Confidence 3555789999999999999999998854321 1 12468888999999999999999999998775432 22
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~ 208 (397)
..+...|.++...++|.+|-..|..+....+
T Consensus 78 --~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 78 --KAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp --HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 3566788899999999999999998887543
No 63
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=95.53 E-value=0.056 Score=47.57 Aligned_cols=104 Identities=8% Similarity=-0.111 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCc-chH
Q 015984 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-QQE 173 (397)
Q Consensus 95 ~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~-~~~ 173 (397)
.+..-..+|..|...|+|++|...+....-.. ...+.+...+..|...+++.+|..++.++....... +++
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~ 75 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH--------KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADY 75 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--------CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--------ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccch
Confidence 34566789999999999999999998854321 224688889999999999999999999987765432 344
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 174 ~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
......+...|.++...++|.+|..+|..+...
T Consensus 76 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 108 (258)
T 3uq3_A 76 KVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108 (258)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 455778888999999999999999999998875
No 64
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=95.53 E-value=0.96 Score=42.54 Aligned_cols=133 Identities=11% Similarity=-0.072 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccC-CCCCchhHHHHHHHHHHHHHhh
Q 015984 71 ETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSG-MRVIDDTFRLSKCVQIARLYLE 149 (397)
Q Consensus 71 ~~~~~~~~~~l~~~~~~~~~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~-~~~~~~~~kle~~L~i~Rl~L~ 149 (397)
+.........++........+ ..+.....++.+|...|++.+|...+.....-.. .+..+.......+.....++..
T Consensus 70 ~~A~~~~~~al~~~~~~~~~~--~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 70 TRSLALMQQTEQMARQHDVWH--YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCcHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH
Confidence 334455555555443322222 2245667899999999999999999887543210 0111112345566778899999
Q ss_pred cCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 150 DDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 150 ~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.+++..|..++.++.......+++. ....+...|+++...++|.+|..+|.++...
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~ 203 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENL 203 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999877655433443 4456677899999999999999999888765
No 65
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=95.43 E-value=0.47 Score=47.64 Aligned_cols=104 Identities=11% Similarity=-0.005 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.....++.+|...|++++|.+.+.....-......++......+...+.+|...|++..|..+++++...-.. ++
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~--~~--- 550 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN--DA--- 550 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC--CH---
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--Ch---
Confidence 4466789999999999999999988643210001233334788999999999999999999999998765432 33
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+|...|.++...
T Consensus 551 -~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 551 -NVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 45677888999999999999999999886
No 66
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.40 E-value=0.24 Score=40.25 Aligned_cols=99 Identities=8% Similarity=0.000 Sum_probs=78.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
......+|..+...|+|.+|...+....... + .-.+++.....+|...+++..|...+.++...-.. ++.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~- 87 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD------H-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN--EPR- 87 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTH-
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC------C-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--CcH-
Confidence 3555788999999999999999998855321 1 12467788899999999999999999998776433 332
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
.+...|.++...++|.+|...|..+....
T Consensus 88 ---~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 88 ---FPFHAAECHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34567889999999999999998888754
No 67
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=95.40 E-value=0.068 Score=44.54 Aligned_cols=105 Identities=11% Similarity=-0.013 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccC-----CCCCc------hhHHHHHHHHHHHHHhhcCChHHHHHHHHHhc
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSG-----MRVID------DTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 164 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~-----~~~~~------~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~ 164 (397)
+..-..+|..+...|+|.+|...+....--.. ....+ +.....++...+..|+..+++..|..+.+++.
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34456789999999999999988877432100 00111 33467889999999999999999999999987
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 165 FLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..-.. ++ ..+...|..+...++|.+|...|..+...
T Consensus 91 ~~~p~--~~----~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 91 KREET--NE----KALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHSTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hcCCc--ch----HHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 76322 22 34556789999999999999999998885
No 68
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=95.39 E-value=0.059 Score=51.66 Aligned_cols=102 Identities=10% Similarity=-0.001 Sum_probs=78.2
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchH-HHHHH
Q 015984 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE-VLNLQ 178 (397)
Q Consensus 100 ~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~-~l~~~ 178 (397)
..+|.+|+..|++++|.+++... ++. + +...-++.++..+++++..|+...|+..+++....-.+ ..| +-...
T Consensus 104 ~~la~i~~~~g~~eeAL~~l~~~-i~~--~--~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d-~~~~~d~~l 177 (310)
T 3mv2_B 104 YLLATAQAILGDLDKSLETCVEG-IDN--D--EAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIED-TVSGDNEMI 177 (310)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHH-HTS--S--CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCH-HHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHH-hcc--C--CCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc-ccccchHHH
Confidence 58999999999999999999884 232 1 11467899999999999999999999999987554210 001 23445
Q ss_pred HHHHHHHHHHHHH--hHHHHHHHHHHHHHhh
Q 015984 179 YKVCYARILDLKR--KFLEAALRYYDISQIQ 207 (397)
Q Consensus 179 ~~~~~~~~~~~~r--~f~~Aa~~y~e~~~~~ 207 (397)
.....|.+....+ +|.+|...|-|+...+
T Consensus 178 ~~Laea~v~l~~g~~~~q~A~~~f~El~~~~ 208 (310)
T 3mv2_B 178 LNLAESYIKFATNKETATSNFYYYEELSQTF 208 (310)
T ss_dssp HHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhC
Confidence 6667777777777 9999999999988753
No 69
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=95.35 E-value=0.18 Score=41.44 Aligned_cols=98 Identities=7% Similarity=0.070 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
+.....+|..|...|++++|.+.+....... . .....+...+.++...+++..|..+++++...... ++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~-- 76 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD---A----FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD--NV-- 76 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT---S----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---c----cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CH--
Confidence 4566788999999999999999998865321 1 12567888899999999999999999998765332 22
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+|...|..+...
T Consensus 77 --~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 105 (186)
T 3as5_A 77 --KVATVLGLTYVQVQKYDLAVPLLIKVAEA 105 (186)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 34566788899999999999999988875
No 70
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=95.29 E-value=0.31 Score=42.58 Aligned_cols=103 Identities=10% Similarity=0.032 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcc-hHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ-QEVL 175 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~-~~~l 175 (397)
.....+|..|...|++++|.+.+....... ..-...+.....+|...+++.+|...++++.......+ ....
T Consensus 43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-------p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 115 (228)
T 4i17_A 43 VTAYNCGVCADNIKKYKEAADYFDIAIKKN-------YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKL 115 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-------CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-------cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 344558999999999999999988855221 12457788999999999999999999999987655422 2233
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
....+...|.++...++|.+|-..|..+...
T Consensus 116 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 116 YAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 4567888999999999999999999998873
No 71
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.21 E-value=0.13 Score=42.75 Aligned_cols=99 Identities=9% Similarity=-0.054 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
......+|..+...|+|.+|...+....... . .-.+.+.....+|...+++..|...++++...-.. ++.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~~- 90 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD---H----YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX--EPR- 90 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTH-
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC---c----ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC--Cch-
Confidence 4556779999999999999999998854321 1 12456778889999999999999999998766433 332
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
.+...|..+...++|.+|-..|..+....
T Consensus 91 ---~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 91 ---FPFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34567899999999999999998888753
No 72
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=95.16 E-value=0.2 Score=44.98 Aligned_cols=105 Identities=9% Similarity=-0.031 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
+.....+|..+...|+|++|...+..+.... -+.....+.++....+|...+++..|...++++.......+.
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~----p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~--- 87 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG----RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR--- 87 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC----SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT---
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch---
Confidence 3556789999999999999999999976432 122345788899999999999999999999998876543211
Q ss_pred HHHHHHHHHHHHHH--------HHhHHHHHHHHHHHHHhh
Q 015984 176 NLQYKVCYARILDL--------KRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 176 ~~~~~~~~~~~~~~--------~r~f~~Aa~~y~e~~~~~ 207 (397)
...-+...|..+.. .++|.+|-..|..+...+
T Consensus 88 ~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 88 VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 11234456777888 999999999999998864
No 73
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.11 Score=39.61 Aligned_cols=93 Identities=4% Similarity=-0.066 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.....+|..+...|+|++|.+.+.....-. + .-...+.....++...+++..|...++++.......+++...
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQ------P-QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------C-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 445678999999999999999998854321 1 114678889999999999999999999998776554455555
Q ss_pred HHHHHHHHHHHHHHHhHHHH
Q 015984 177 LQYKVCYARILDLKRKFLEA 196 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~A 196 (397)
...+...|..+...+++.+|
T Consensus 78 ~~~~~~~~~~~~~~~~~~~a 97 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSVQIP 97 (111)
T ss_dssp HHHHHHHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHHhHhhh
Confidence 55556667776666655443
No 74
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.09 E-value=0.17 Score=43.59 Aligned_cols=103 Identities=12% Similarity=0.040 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcc-----
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ----- 171 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~----- 171 (397)
.....+|.+|...|++++|.+.+.....-. ..-...+.....+|...+++..|..+++++........
T Consensus 38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 110 (213)
T 1hh8_A 38 RICFNIGCMYTILKNMTEAEKAFTRSINRD-------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYK 110 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHH
Confidence 567889999999999999999888754221 11246788889999999999999999999876543211
Q ss_pred -----hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 172 -----QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 172 -----~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
........+...|..+...++|.+|..+|..+...
T Consensus 111 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 111 ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 00112345567888899999999999999888875
No 75
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.09 E-value=0.2 Score=39.94 Aligned_cols=94 Identities=11% Similarity=-0.089 Sum_probs=74.6
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHH
Q 015984 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (397)
Q Consensus 100 ~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~ 179 (397)
..+|..+...|++.+|...+....... + .-.+.+.....++...+++..|...+.++...-.. +++ .
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~------P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~~----~ 87 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKE------P-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK--DIA----V 87 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH----H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHH----H
Confidence 567889999999999999998865321 1 12567888899999999999999999998776433 332 4
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 180 KVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 180 ~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
+...|.++...++|.+|...|..+...
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466888899999999999999888764
No 76
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=95.05 E-value=1.1 Score=38.73 Aligned_cols=95 Identities=9% Similarity=-0.156 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHH
Q 015984 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (397)
Q Consensus 99 ~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~ 178 (397)
...+|.+|...|++++|...+.....-. . .-...+...+.++...+++..|..+++++...... ++ .
T Consensus 128 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~ 194 (243)
T 2q7f_A 128 FYMLGTVLVKLEQPKLALPYLQRAVELN--E-----NDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPG--HA----D 194 (243)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTT--CH----H
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC--C-----ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--cH----H
Confidence 4445555556666666655555533211 0 01234455555555666666666655555443221 11 1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 179 YKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 179 ~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.+...|.++...++|.+|..+|..+...
T Consensus 195 ~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 195 AFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 3344555555556666665555555543
No 77
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.85 E-value=0.24 Score=38.13 Aligned_cols=97 Identities=12% Similarity=0.044 Sum_probs=71.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.....+|.++...|++++|.+.+....... . .-...+...+.++...+++.+|..++.++...... ++
T Consensus 36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~--- 103 (136)
T 2fo7_A 36 EAWYNLGNAYYKQGDYDEAIEYYQKALELD---P----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SA--- 103 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---T----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CH---
T ss_pred hHHHHHHHHHHHhcCHHHHHHHHHHHHHHC---C----CchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--Ch---
Confidence 345668899999999999999988754321 1 11346677888999999999999999987665332 22
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
......|.++...++|.+|...|.++...
T Consensus 104 -~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 104 -EAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp -HHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 23345678888899999998888887764
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=94.84 E-value=0.26 Score=46.53 Aligned_cols=113 Identities=8% Similarity=-0.116 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcch
Q 015984 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (397)
Q Consensus 93 ~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~ 172 (397)
...+.+...+|.++...|++++|...+....... ...+.......+.....++...+++..|..++.++.......++
T Consensus 11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~ 88 (373)
T 1hz4_A 11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 88 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc
Confidence 3445677888999999999999999988744322 22233345667778888999999999999999998877655556
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
+..........|.++...++|.+|-.+|.++....
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 123 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI 123 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 66667777888999999999999999998888754
No 79
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=94.83 E-value=1.5 Score=39.69 Aligned_cols=100 Identities=9% Similarity=-0.095 Sum_probs=49.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcch---HHHH
Q 015984 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ---EVLN 176 (397)
Q Consensus 100 ~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~---~~l~ 176 (397)
..+|.+|...|++++|.+.+....... + .-...+.....++...+++.+|..+++++.......++ +.-.
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~~------~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 235 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSIA------P-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKW 235 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTC
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhC------C-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHH
Confidence 335556666666666666555533211 0 11244555556666666666666666665443321110 0111
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
...+...|.++...++|.+|..+|..+...
T Consensus 236 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 265 (330)
T 3hym_B 236 EPLLNNLGHVCRKLKKYAEALDYHRQALVL 265 (330)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhh
Confidence 224444555566666666666666555553
No 80
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=94.83 E-value=0.16 Score=39.17 Aligned_cols=95 Identities=13% Similarity=0.057 Sum_probs=73.2
Q ss_pred HHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHH
Q 015984 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (397)
Q Consensus 99 ~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~ 178 (397)
...+|..|...|++++|.+.+....... . .-...+...++++...+++..|..++.++...... ++ .
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~ 70 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD---P----RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR--SA----E 70 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC---T----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CH----H
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC---C----cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC--ch----H
Confidence 4568999999999999999998864322 1 11456777899999999999999999998765332 22 2
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 179 YKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 179 ~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.+...|.++...++|.+|...|.++...
T Consensus 71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 98 (136)
T 2fo7_A 71 AWYNLGNAYYKQGDYDEAIEYYQKALEL 98 (136)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3456788889999999999999888774
No 81
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=94.76 E-value=0.13 Score=49.95 Aligned_cols=105 Identities=13% Similarity=-0.015 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCC---------CCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhccc
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGM---------RVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 166 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~---------~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~ 166 (397)
+.....+|..|...|+|++|.+.+.....-... ..-.+......+...+.+|+..+++.+|..+++++...
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 345677899999999999999988875531000 00023356788999999999999999999999999875
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 167 VSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
-.. + ...+...|..+...++|.+|...|..+...
T Consensus 303 ~p~--~----~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 303 DPS--N----TKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp CTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Cch--h----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 332 2 234556788899999999999999998885
No 82
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=94.76 E-value=0.096 Score=46.80 Aligned_cols=99 Identities=14% Similarity=0.035 Sum_probs=78.0
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHH
Q 015984 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (397)
Q Consensus 98 l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~ 177 (397)
....+|..+...|++++|.+.+....... .. -.+.+.....+|...+++..|..+++++.. .. ++++...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~ 74 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK-YN------SPYIYNRRAVCYYELAKYDLAQKDIETYFS-KV--NATKAKS 74 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CC------CSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TS--CTTTCCH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC------cHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cc--CchhHHH
Confidence 34678999999999999999998865322 01 123677778899999999999999999877 22 4556666
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 178 QYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 178 ~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+|-.+|..+...
T Consensus 75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~ 103 (272)
T 3u4t_A 75 ADFEYYGKILMKKGQDSLAIQQYQAAVDR 103 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 66788999999999999999999998885
No 83
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=94.70 E-value=0.22 Score=43.81 Aligned_cols=99 Identities=10% Similarity=-0.079 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.....+|.+|...|++++|.+.+....... . .-...+...+.+|...+++.+|..+++++........ .
T Consensus 72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~----~ 140 (252)
T 2ho1_A 72 DAHAALAVVFQTEMEPKLADEEYRKALASD--S-----RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPE----R 140 (252)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTT----H
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--c-----CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcc----c
Confidence 566789999999999999999998854321 1 1246778889999999999999999999877111111 2
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
...+...|.++...++|.+|...|.++...
T Consensus 141 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 170 (252)
T 2ho1_A 141 SRVFENLGLVSLQMKKPAQAKEYFEKSLRL 170 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 335566788999999999999999998875
No 84
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=94.69 E-value=0.54 Score=42.08 Aligned_cols=108 Identities=14% Similarity=0.006 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhh--------cCChHHHHHHHHHhcccc
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE--------DDDAVNAEAFINKASFLV 167 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~--------~~d~~~A~~~l~ka~~~~ 167 (397)
......||.+|...|+|.+|...+....-.. . +.....+.+......+.. .+++..|...++++....
T Consensus 52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--p--~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 127 (261)
T 3qky_A 52 ADAQFYLARAYYQNKEYLLAASEYERFIQIY--Q--IDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY 127 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--TCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC--C--CCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC
Confidence 3566889999999999999999999865432 1 122345677888888888 999999999999987765
Q ss_pred cCcch-HHHHHH----------HHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 168 SSSQQ-EVLNLQ----------YKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 168 ~~~~~-~~l~~~----------~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
..... +..... -....|.++...++|.+|-..|..+...+
T Consensus 128 p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~ 178 (261)
T 3qky_A 128 PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAY 178 (261)
T ss_dssp TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 44221 111111 12567899999999999999999998863
No 85
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.64 E-value=2.5 Score=38.43 Aligned_cols=106 Identities=13% Similarity=0.017 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCch-------hHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccC
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD-------TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~-------~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~ 169 (397)
.....+|.+|...|++++|...+....--. ..... -.++...+..+..+...+++..|..++.++......
T Consensus 189 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 266 (359)
T 3ieg_A 189 EAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS 266 (359)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 556789999999999999999988865321 11111 012333456688899999999999999998876544
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 170 SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
++......+...|.++...++|.+|...|..+...
T Consensus 267 --~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 267 --VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp --SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 66667777888999999999999999999998885
No 86
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.55 E-value=0.26 Score=42.33 Aligned_cols=92 Identities=13% Similarity=0.071 Sum_probs=75.3
Q ss_pred HHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHH
Q 015984 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (397)
Q Consensus 99 ~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~ 178 (397)
...+|..|...|+|++|...+.... +. -...+.....+|...+++.+|..+++++...... ++ .
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-~~---------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~--~~----~ 72 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-DP---------HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH--LA----V 72 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-SC---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----H
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-CC---------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc--ch----H
Confidence 4678999999999999999998863 21 2358889999999999999999999998765432 22 3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 179 YKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 179 ~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.+...|.++...++|.+|...|..+...
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~ 100 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQ 100 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 4566789999999999999999998875
No 87
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=94.53 E-value=0.084 Score=39.77 Aligned_cols=96 Identities=9% Similarity=-0.083 Sum_probs=74.2
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHH
Q 015984 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (397)
Q Consensus 100 ~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~ 179 (397)
..+|..|...|++++|...+....... . .-.+.+.....++...+++.+|..+++++...... ......
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~~ 78 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLD---P----EESKYWLMKGKALYNLERYEEAVDCYNYVINVIED----EYNKDV 78 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHC---C----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TTCHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhC---c----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cchHHH
Confidence 568899999999999999998754321 1 12457788899999999999999999998765432 111235
Q ss_pred HHHHHHHHHHH-HhHHHHHHHHHHHHHh
Q 015984 180 KVCYARILDLK-RKFLEAALRYYDISQI 206 (397)
Q Consensus 180 ~~~~~~~~~~~-r~f~~Aa~~y~e~~~~ 206 (397)
+...|.++... ++|.+|..+|..+...
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 79 WAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 56778888999 9999999999888875
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=94.49 E-value=0.98 Score=43.10 Aligned_cols=135 Identities=9% Similarity=-0.023 Sum_probs=87.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCch-----hHHHHHHHHHHHHHhhcC--ChHHHHHHHHHhcccccC
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD-----TFRLSKCVQIARLYLEDD--DAVNAEAFINKASFLVSS 169 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~-----~~kle~~L~i~Rl~L~~~--d~~~A~~~l~ka~~~~~~ 169 (397)
.+...++.+|...|+.+.|.+.+..++- .++ ..-+-++|-.+.+.+..+ ++..|-.++........
T Consensus 137 ea~~l~vqi~L~~~r~d~A~k~l~~~~~------~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p- 209 (310)
T 3mv2_B 137 ELLLLAIEVALLNNNVSTASTIFDNYTN------AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP- 209 (310)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH------HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC-
Confidence 5557889999999999999999988652 122 456667777786666555 99999999999765543
Q ss_pred cchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcCCC---CCCHHHHHHHHHHHHHHHHhcCCCCcchHHHH
Q 015984 170 SQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQKRQIGDE---TIDEEALEQALSAAVTCTILAAAGPQRSRVLA 246 (397)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~~~~~~~---~~~~~~~~~~L~~av~~~ILa~~~~~rs~ll~ 246 (397)
+|.-...+.. .++..++|.+|-..+..+......- ... .-+.+ .+|.+++.|....+. +-.+++.
T Consensus 210 --~~~~~~lLln----~~~~~g~~~eAe~~L~~l~~~~p~~-~~k~~~~p~~~---~~LaN~i~l~~~lgk--~a~~l~~ 277 (310)
T 3mv2_B 210 --TWKTQLGLLN----LHLQQRNIAEAQGIVELLLSDYYSV-EQKENAVLYKP---TFLANQITLALMQGL--DTEDLTN 277 (310)
T ss_dssp --SHHHHHHHHH----HHHHHTCHHHHHHHHHHHHSHHHHT-TTCHHHHSSHH---HHHHHHHHHHHHTTC--TTHHHHH
T ss_pred --CcccHHHHHH----HHHHcCCHHHHHHHHHHHHHhcccc-cccccCCCCCH---HHHHHHHHHHHHhCh--HHHHHHH
Confidence 2211111111 5799999999888886544431100 000 01223 377677767666543 5567777
Q ss_pred hhhh
Q 015984 247 TLYK 250 (397)
Q Consensus 247 ~l~~ 250 (397)
++.+
T Consensus 278 qL~~ 281 (310)
T 3mv2_B 278 QLVK 281 (310)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7766
No 89
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.48 E-value=1.4 Score=41.20 Aligned_cols=107 Identities=9% Similarity=0.033 Sum_probs=67.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCC--CCC-chhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcch
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGM--RVI-DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~--~~~-~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~ 172 (397)
......||.+|...|++++|.+.+.....-... ... .......++.....++...+++.+|..++.++........+
T Consensus 133 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 212 (365)
T 4eqf_A 133 LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID 212 (365)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC
Confidence 356678999999999999999999886431100 000 00012344556688899999999999999998776433223
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
+. .+...|.++...++|.+|-..|..+...
T Consensus 213 ~~----~~~~l~~~~~~~g~~~~A~~~~~~al~~ 242 (365)
T 4eqf_A 213 PD----LQTGLGVLFHLSGEFNRAIDAFNAALTV 242 (365)
T ss_dssp HH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 33 4556788899999999999999998875
No 90
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=94.43 E-value=0.62 Score=38.85 Aligned_cols=97 Identities=13% Similarity=0.088 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHH-HhhcCCh--HHHHHHHHHhcccccCcchH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARL-YLEDDDA--VNAEAFINKASFLVSSSQQE 173 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl-~L~~~d~--~~A~~~l~ka~~~~~~~~~~ 173 (397)
.....+|.+|...|++++|...+.....-. . .-...+.....+ |...+++ ..|..+++++...... ++
T Consensus 45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p-----~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~--~~ 115 (177)
T 2e2e_A 45 EQWALLGEYYLWQNDYSNSLLAYRQALQLR--G-----ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSN--EI 115 (177)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--C-----SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C-----CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCC--cH
Confidence 456789999999999999999998854322 0 114567777888 8889998 9999999998766432 22
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 174 ~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+|...|..+...
T Consensus 116 ----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 116 ----TALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----HHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 24556788999999999999999998885
No 91
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.42 E-value=0.36 Score=45.89 Aligned_cols=108 Identities=18% Similarity=0.048 Sum_probs=82.4
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccC-CCCCc-------hhHHHHHHHHHHHHHhhcCChHHHHHHHHHhc
Q 015984 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSG-MRVID-------DTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 164 (397)
Q Consensus 93 ~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~-~~~~~-------~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~ 164 (397)
...+.....+|..|...|+|.+|...+....--.. ....+ ...+...+.....+|+..+++.+|..+++++.
T Consensus 144 p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al 223 (336)
T 1p5q_A 144 LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL 223 (336)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34456778899999999999999999887543210 11011 12246888999999999999999999999998
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 165 FLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..... ++ ..+...|..+...++|.+|...|..+...
T Consensus 224 ~~~p~--~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 224 ELDSN--NE----KGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp HHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhCCC--cH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 76433 22 34566788999999999999999999885
No 92
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=94.40 E-value=2.9 Score=38.04 Aligned_cols=99 Identities=10% Similarity=0.057 Sum_probs=79.6
Q ss_pred HHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHH
Q 015984 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (397)
Q Consensus 99 ~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~ 178 (397)
...+|..+...|++++|.+.+....... .-+.......+.....++...+++.+|..+++++...... ++ .
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~ 307 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTE---PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPD--NV----N 307 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--cH----H
Confidence 3456899999999999999999865432 2234456677888999999999999999999998775332 33 3
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 179 YKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 179 ~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.+...|.++...++|.+|..+|..+...
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 5667889999999999999999999885
No 93
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=94.37 E-value=0.11 Score=38.42 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=44.8
Q ss_pred HhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECC
Q 015984 312 SKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 362 (397)
Q Consensus 312 s~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~ 362 (397)
.+-=+.+.+++||..||++.+++-.-+-.+..+|+|.|.||--...|+...
T Consensus 16 Ik~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~ 66 (72)
T 1wi9_A 16 IKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITP 66 (72)
T ss_dssp HHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCC
T ss_pred HHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecH
Confidence 344588999999999999999999999999999999999999777776654
No 94
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=94.34 E-value=0.32 Score=42.28 Aligned_cols=98 Identities=9% Similarity=0.075 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
......+|.+|...|++++|.+.+....... . .-.+.+...+.++...+++.+|..+++++...... ++
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~-- 159 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--M-----ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN--DT-- 159 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--C-----CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT--CH--
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C-----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc--cH--
Confidence 3566789999999999999999998865322 1 11356788899999999999999999998765432 22
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+|...|.++...
T Consensus 160 --~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 188 (243)
T 2q7f_A 160 --EARFQFGMCLANEGMLDEALSQFAAVTEQ 188 (243)
T ss_dssp --HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 25567888999999999999999888875
No 95
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=94.22 E-value=1.3 Score=44.21 Aligned_cols=99 Identities=10% Similarity=-0.139 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccC-cchHHHHHH
Q 015984 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS-SQQEVLNLQ 178 (397)
Q Consensus 100 ~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~-~~~~~l~~~ 178 (397)
..|+..|...|++++|.+.+..+.-.. . + -...+...+.+|...|++.+|..+++++...... +.+|+....
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~ 517 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYALF---Q-Y---DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAA 517 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC---C-C---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC---C-C---ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHH
Confidence 445555666666666666555543211 0 0 1234555566666666666666666665443211 112222233
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015984 179 YKVCYARILDLKRKFLEAALRYYDISQ 205 (397)
Q Consensus 179 ~~~~~~~~~~~~r~f~~Aa~~y~e~~~ 205 (397)
.+...|..+...++|.+|...|.++..
T Consensus 518 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 544 (597)
T 2xpi_A 518 TWANLGHAYRKLKMYDAAIDALNQGLL 544 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 445555666666666666666655555
No 96
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.21 E-value=0.94 Score=36.59 Aligned_cols=99 Identities=8% Similarity=-0.119 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.+...+|.+|...|+|++|...+.....-. . .-...+.....++...+++..|..++.++...... ++...
T Consensus 48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~-----~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~--~~~~~ 118 (166)
T 1a17_A 48 IYYGNRSLAYLRTECYGYALGDATRAIELD--K-----KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH--DKDAK 118 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--c-----ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC--CHHHH
Confidence 556789999999999999999988754321 1 12457888899999999999999999998766433 33322
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.....+..+...++|.+|...|-.....
T Consensus 119 --~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 146 (166)
T 1a17_A 119 --MKYQECNKIVKQKAFERAIAGDEHKRSV 146 (166)
T ss_dssp --HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHHHcccchHHH
Confidence 3334455567789999999988766554
No 97
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=94.14 E-value=2.4 Score=40.48 Aligned_cols=107 Identities=13% Similarity=-0.007 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchh------HHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCc
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDT------FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~------~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~ 170 (397)
.....+|.+|...|++++|...+....--. ....... .+.+..+..+..|...+++..|..+++++......
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~- 289 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS- 289 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-
Confidence 556789999999999999999998865221 0110000 12233355689999999999999999998775433
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
++......+.+.|.++...++|.+|-..|.++...
T Consensus 290 -~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 290 -IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp -SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 66777788889999999999999999999998875
No 98
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=94.12 E-value=1 Score=39.19 Aligned_cols=70 Identities=7% Similarity=-0.089 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCC-chhHHHHHHHHHHHHHhhcCChHHHHHHHHHhccc
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVI-DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 166 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~-~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~ 166 (397)
......+|.+|...|++++|.+.+.....-. .... -.....+.+.....++...+++.+|..+++++...
T Consensus 76 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 76 ANAYIGKSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 4567789999999999999999998854321 0110 01124578899999999999999999999999775
No 99
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=94.10 E-value=2.1 Score=39.82 Aligned_cols=96 Identities=9% Similarity=0.037 Sum_probs=48.2
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHH
Q 015984 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (397)
Q Consensus 98 l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~ 177 (397)
....||.+|...|++++|.+.+.....-. . .-...+.....+|...+++.+|..+++++...... + .
T Consensus 215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~----~ 281 (365)
T 4eqf_A 215 LQTGLGVLFHLSGEFNRAIDAFNAALTVR---P----EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG--F----I 281 (365)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC---T----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----H
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--c----h
Confidence 33455555555566665555555533211 0 01234555555556666666666666655443221 1 2
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 178 QYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 178 ~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+|..+|..+...
T Consensus 282 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 310 (365)
T 4eqf_A 282 RSRYNLGISCINLGAYREAVSNFLTALSL 310 (365)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 23344555556666666666666555554
No 100
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=94.05 E-value=2.2 Score=35.41 Aligned_cols=97 Identities=9% Similarity=-0.135 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.....++.++...+++.+|...+.....-. . .-.+.+.....+|...+++.+|...++++...-.. ++
T Consensus 74 ~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~---~----~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~--~~--- 141 (184)
T 3vtx_A 74 EAYYILGSANFMIDEKQAAIDALQRAIALN---T----VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG--FI--- 141 (184)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---c----cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch--hh---
Confidence 445678899999999999999887754321 1 12356778899999999999999999998765432 32
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+|-.+|..+...
T Consensus 142 -~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 142 -RAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 34566889999999999999999998874
No 101
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=94.01 E-value=1.8 Score=42.43 Aligned_cols=95 Identities=17% Similarity=0.173 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHH
Q 015984 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (397)
Q Consensus 98 l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~ 177 (397)
....+|.+|...|++++|...+....... .. -.+.+...+.+|...+++..|..+++++...... ++.
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~-----~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--~~~--- 379 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLN--PE-----NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT--LPE--- 379 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CTH---
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ChH---
Confidence 44556666666666666666666543221 00 0134555666666666666666666665544322 111
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015984 178 QYKVCYARILDLKRKFLEAALRYYDISQ 205 (397)
Q Consensus 178 ~~~~~~~~~~~~~r~f~~Aa~~y~e~~~ 205 (397)
.+...|.++...++|.+|...|..+..
T Consensus 380 -~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 380 -VPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp -HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 223345666666666666666655544
No 102
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=94.00 E-value=2.8 Score=38.73 Aligned_cols=98 Identities=11% Similarity=-0.000 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.....+|.+|...|++++|...+.....-. . .-...+....++|...+++..|..+++++...... ++
T Consensus 218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~---~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~--- 285 (368)
T 1fch_A 218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVR---P----NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG--YI--- 285 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---c----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cH---
Confidence 455667788888888888887777643221 0 11346677777788888888888888877654322 22
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 177 LQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
..+...|.++...++|.+|...|..+....
T Consensus 286 -~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 286 -RSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp -HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 345567777788888888888887776653
No 103
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=93.93 E-value=2.9 Score=40.55 Aligned_cols=103 Identities=17% Similarity=0.123 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhh---cCChHHHHHHHHHhcccccCcchH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE---DDDAVNAEAFINKASFLVSSSQQE 173 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~---~~d~~~A~~~l~ka~~~~~~~~~~ 173 (397)
.....+|.+|...|++++|...+....-.. ....+.......+.....++.. .+++..|..+++++...... ++
T Consensus 373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~--~~ 449 (514)
T 2gw1_A 373 EVPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR--SE 449 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT--CH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc--cH
Confidence 455778999999999999999988754321 0111111235588888999999 99999999999998765432 22
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 174 ~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+|...|..+...
T Consensus 450 ----~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 450 ----QAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34567889999999999999999999886
No 104
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=93.93 E-value=0.46 Score=44.80 Aligned_cols=101 Identities=15% Similarity=0.070 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcch
Q 015984 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (397)
Q Consensus 93 ~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~ 172 (397)
.++..++..+|..+.+.|+|++|.+.+..+... . ..++ .......+|+..++|..|..++.++... ++
T Consensus 99 ~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~------~-p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d 166 (282)
T 4f3v_A 99 TSPLAITMGFAACEAAQGNYADAMEALEAAPVA------G-SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW----PD 166 (282)
T ss_dssp SSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT------T-CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC----SC
T ss_pred CCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------C-CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc----CC
Confidence 456688999999999999999999999986631 1 1333 5566667999999999999999866432 25
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015984 173 EVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (397)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~ 205 (397)
+......+.+.|..+...++|.+|-.+|..+..
T Consensus 167 ~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~ 199 (282)
T 4f3v_A 167 KFLAGAAGVAHGVAAANLALFTEAERRLTEAND 199 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 555566777889999999999999999998875
No 105
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=93.89 E-value=0.33 Score=43.10 Aligned_cols=100 Identities=10% Similarity=-0.170 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchH
Q 015984 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (397)
Q Consensus 94 q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~ 173 (397)
........+|..|...|++++|...+.....-. . .-.+.+...+.+|...+++..|..+++++...... +
T Consensus 41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~--~- 110 (275)
T 1xnf_A 41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIR--P-----DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT--Y- 110 (275)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C-
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--C-----CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcc--c-
Confidence 445677889999999999999999888754321 1 12457788888999999999999999998765432 2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 174 ~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
...+...|.++...++|.+|...|..+...
T Consensus 111 ---~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 140 (275)
T 1xnf_A 111 ---NYAHLNRGIALYYGGRDKLAQDDLLAFYQD 140 (275)
T ss_dssp ---THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---cHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 235566788888899999999999888875
No 106
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=93.84 E-value=0.42 Score=40.74 Aligned_cols=99 Identities=9% Similarity=-0.078 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhc-CChHHHHHHHHHhcccccCcchHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED-DDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~-~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
.....+|.+|...|++++|.+.+....... . .-...+...++++... +++..|..+++++.. ... +|.
T Consensus 43 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~-----~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~--~~~- 111 (225)
T 2vq2_A 43 LAWLVRAEIYQYLKVNDKAQESFRQALSIK--P-----DSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPT--YPT- 111 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STT--CSC-
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhC--C-----CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcC--Ccc-
Confidence 456779999999999999999998865322 1 1245778889999999 999999999999877 111 111
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
....+...|.++...++|.+|-..|.++...
T Consensus 112 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 142 (225)
T 2vq2_A 112 PYIANLNKGICSAKQGQFGLAEAYLKRSLAA 142 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 2235567888999999999999999988875
No 107
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=93.79 E-value=0.78 Score=41.60 Aligned_cols=105 Identities=9% Similarity=0.010 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccC--CCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSG--MRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~--~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~ 173 (397)
......+|.+|...|++++|...+.....-.. ....+.......+.....+|...+++..|..+++++...... +
T Consensus 193 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~--~- 269 (330)
T 3hym_B 193 PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ--N- 269 (330)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--C-
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc--c-
Confidence 35667899999999999999999887653210 011111334578889999999999999999999998765432 2
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 174 ~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
...+...|.++...++|.+|..+|..+...
T Consensus 270 ---~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 270 ---ASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp ---SHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred ---hHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 234566789999999999999999888774
No 108
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=93.77 E-value=3.1 Score=39.70 Aligned_cols=98 Identities=10% Similarity=0.060 Sum_probs=78.3
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHH
Q 015984 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (397)
Q Consensus 100 ~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~ 179 (397)
..++..+...|++++|...+....... .-+.....+.+...+.++...+++..|..+++++...... ++ ..
T Consensus 261 ~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~--~~----~~ 331 (450)
T 2y4t_A 261 IESAEELIRDGRYTDATSKYESVMKTE---PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD--NV----NA 331 (450)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CH----HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--cH----HH
Confidence 445999999999999999998865422 2244456788899999999999999999999998765332 22 35
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 180 KVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 180 ~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
+...|.++...++|.+|...|..+...
T Consensus 332 ~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 332 LKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 566888889999999999999999885
No 109
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=93.77 E-value=2 Score=42.11 Aligned_cols=103 Identities=15% Similarity=0.060 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhc----------CChHHHHHHHHHhccc
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED----------DDAVNAEAFINKASFL 166 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~----------~d~~~A~~~l~ka~~~ 166 (397)
.+...+|.+|...|++++|.+.+.....-.. ...+....+..++..+.++... +++..|..+++++...
T Consensus 379 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 457 (537)
T 3fp2_A 379 EVPTFFAEILTDRGDFDTAIKQYDIAKRLEE-VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL 457 (537)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence 4566789999999999999988887543210 1111122334455566667766 9999999999998766
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 167 VSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
... ++ ..+...|.++...++|.+|...|..+...
T Consensus 458 ~p~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 458 DPR--SE----QAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp CTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCC--CH----HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 433 23 35677889999999999999999999886
No 110
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=93.75 E-value=0.23 Score=46.25 Aligned_cols=24 Identities=8% Similarity=-0.137 Sum_probs=11.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Q 015984 182 CYARILDLKRKFLEAALRYYDISQ 205 (397)
Q Consensus 182 ~~~~~~~~~r~f~~Aa~~y~e~~~ 205 (397)
..|.++...++|.+|-..|.++..
T Consensus 205 ~la~~~~~~g~~~eA~~~l~~al~ 228 (291)
T 3mkr_A 205 GQAACHMAQGRWEAAEGVLQEALD 228 (291)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344444444555554444444444
No 111
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.69 E-value=0.4 Score=44.19 Aligned_cols=99 Identities=12% Similarity=-0.031 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.....+|..|...|+|.+|...+....... . .-..++.....+|...+++..|...++++...... ++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~--~~--- 72 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRN---P----LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ--SV--- 72 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---S----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT--CH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---C----ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CH---
Confidence 345678999999999999999998755321 1 12467888999999999999999999999876432 32
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 015984 177 LQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~ 208 (397)
..+...|..+...++|.+|...|..+....+
T Consensus 73 -~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 73 -KAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 3455678899999999999999988887543
No 112
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=93.59 E-value=0.41 Score=47.66 Aligned_cols=107 Identities=16% Similarity=0.080 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccC-CCCCch-------hHHHHHHHHHHHHHhhcCChHHHHHHHHHhcc
Q 015984 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSG-MRVIDD-------TFRLSKCVQIARLYLEDDDAVNAEAFINKASF 165 (397)
Q Consensus 94 q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~-~~~~~~-------~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~ 165 (397)
..+.....+|..|...|+|.+|...+....--.. ....++ ..+...+......|+..+++.+|..+++++..
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 345 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALG 345 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 3456667889999999999999998887543110 111111 23478889999999999999999999999987
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 166 LVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.... + ...+...|..|...++|.+|..+|..+...
T Consensus 346 ~~p~--~----~~a~~~~g~a~~~~g~~~~A~~~~~~al~l 380 (457)
T 1kt0_A 346 LDSA--N----EKGLYRRGEAQLLMNEFESAKGDFEKVLEV 380 (457)
T ss_dssp HSTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cCCc--c----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 6433 2 234556788999999999999999998874
No 113
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=93.54 E-value=0.27 Score=38.45 Aligned_cols=90 Identities=10% Similarity=0.013 Sum_probs=67.4
Q ss_pred hhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHH
Q 015984 108 SEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARIL 187 (397)
Q Consensus 108 ~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~ 187 (397)
..|++++|...+.....- ..++..-...+.....+|...+++.+|..++.++...... ++ ..+...|..+
T Consensus 2 ~~g~~~~A~~~~~~al~~----~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~----~~~~~l~~~~ 71 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIAS----GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN--HQ----ALRVFYAMVL 71 (117)
T ss_dssp -----CCCHHHHHHHHSS----CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHc----CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--ch----HHHHHHHHHH
Confidence 357788888888774421 1235567889999999999999999999999999776443 33 3556688999
Q ss_pred HHHHhHHHHHHHHHHHHHhh
Q 015984 188 DLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 188 ~~~r~f~~Aa~~y~e~~~~~ 207 (397)
...++|.+|-..|..+....
T Consensus 72 ~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 72 YNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999988753
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=93.32 E-value=1.4 Score=38.64 Aligned_cols=107 Identities=10% Similarity=-0.091 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHH------------------hhcCChHHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLY------------------LEDDDAVNAEA 158 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~------------------L~~~d~~~A~~ 158 (397)
.....+|..|...|+|++|...+..+.-... .. . ...+.+......+ ...+++.+|..
T Consensus 42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P-~~-~--~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 117 (225)
T 2yhc_A 42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNP-TH-P--NIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFS 117 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC-T--THHHHHHHHHHHHHHHHC--------------CCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCc-CC-C--cHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHH
Confidence 4557799999999999999999998653321 11 1 1112223333333 34678999999
Q ss_pred HHHHhcccccCcc-hHHH----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 159 FINKASFLVSSSQ-QEVL----------NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 159 ~l~ka~~~~~~~~-~~~l----------~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
.++++........ -++. ...+....|.++...++|.+|...|..+...+
T Consensus 118 ~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~ 177 (225)
T 2yhc_A 118 DFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY 177 (225)
T ss_dssp HHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC
Confidence 9999877665432 1211 12233567899999999999999999999864
No 115
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=93.21 E-value=0.38 Score=48.90 Aligned_cols=104 Identities=10% Similarity=-0.099 Sum_probs=79.5
Q ss_pred HHHHHHhhhcHHHHHHHHhhchhccCCCCCchh--HHHHHHHHHHHHHhhcCChHHHHHHHHHhcccc---cCcchHHHH
Q 015984 102 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDT--FRLSKCVQIARLYLEDDDAVNAEAFINKASFLV---SSSQQEVLN 176 (397)
Q Consensus 102 La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~--~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~---~~~~~~~l~ 176 (397)
.+.-+...|+|++|..++.....-. .+.+.+. .-+..+-..+.+|...++|.+|..+..++.... +..++|++-
T Consensus 315 ~a~~~~~qg~~~eA~~l~~~aL~~~-~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 315 KIDKARSEGLYHEVVKLCRECLEKQ-EPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHH-TTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHH-HHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 3455778999999999887754322 3445554 478888999999999999999999999976554 344677764
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 177 LQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
.-+.-.|.+|...++|.+|-..|..++...
T Consensus 394 -~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~ 423 (490)
T 3n71_A 394 -MAVMRAGLTNWHAGHIEVGHGMICKAYAIL 423 (490)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 444557788899999999999998888754
No 116
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=93.14 E-value=0.27 Score=43.75 Aligned_cols=99 Identities=10% Similarity=-0.066 Sum_probs=74.2
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHH
Q 015984 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (397)
Q Consensus 98 l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~ 177 (397)
....+|.+|...|++++|.+.+..... . .-+.......+.....+|...+++.+|..+++++...... ++
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~-~---~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~--~~---- 108 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFS-K---VNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT--RL---- 108 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHT-T---SCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CT----
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHh-c---cCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc--cH----
Confidence 456688899999999999998888653 2 1133345677888899999999999999999998765433 22
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 178 QYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 178 ~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+|-.+|..+...
T Consensus 109 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 137 (272)
T 3u4t_A 109 DMYGQIGSYFYNKGNFPLAIQYMEKQIRP 137 (272)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHGGGCCS
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHhhc
Confidence 24566788888889999988888777663
No 117
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=93.06 E-value=0.6 Score=42.31 Aligned_cols=99 Identities=13% Similarity=-0.026 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
......+|.+|...|++++|.+.+....... . .-.+.+...+.++...+++.+|..+++++...... ++.
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~---~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--~~~- 241 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELR---P----DDAQLWNKLGATLANGNRPQEALDAYNRALDINPG--YVR- 241 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---C----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CHH-
Confidence 3566788999999999999999888754321 1 11356788888999999999999999988665332 222
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
.+...|.++...++|.+|...|..+....
T Consensus 242 ---~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 242 ---VMYNMAVSYSNMSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 34567888888999999999998887754
No 118
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=92.99 E-value=0.13 Score=45.84 Aligned_cols=96 Identities=15% Similarity=0.005 Sum_probs=76.9
Q ss_pred HHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHH
Q 015984 102 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKV 181 (397)
Q Consensus 102 La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~ 181 (397)
++..+...|++++|...+..+.-. ...++....+.+....+.|...+++.+|..++.++...... ++ ..+.
T Consensus 11 ~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~--~~----~~~~ 81 (275)
T 1xnf_A 11 LAVPLQPTLQQEVILARMEQILAS---RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD--MP----EVFN 81 (275)
T ss_dssp SCCCCCCCHHHHHHHHHHHHHHTS---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--CH----HHHH
T ss_pred eeeccCccchHHHHHHHHHHHHhc---ccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC--cH----HHHH
Confidence 445566789999999999986543 23456678899999999999999999999999998776433 22 2456
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 182 CYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 182 ~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..|.++...++|.+|..+|..+...
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~al~~ 106 (275)
T 1xnf_A 82 YLGIYLTQAGNFDAAYEAFDSVLEL 106 (275)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHhc
Confidence 6788999999999999999998885
No 119
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=92.92 E-value=0.76 Score=39.99 Aligned_cols=94 Identities=13% Similarity=-0.016 Sum_probs=72.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHH----------------HHHHHhhcCChHHHHHHHHHh
Q 015984 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQ----------------IARLYLEDDDAVNAEAFINKA 163 (397)
Q Consensus 100 ~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~----------------i~Rl~L~~~d~~~A~~~l~ka 163 (397)
...|..+...|+|++|...+...... ++. -.+.+.. ...+|...+++.+|...++++
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~------~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIAL------NID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH------CHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh------CCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 55677888999999999998875421 111 1233444 899999999999999999998
Q ss_pred cccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 164 SFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 164 ~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
...-.. ++ ..+...|.++...++|.+|-..|..+...
T Consensus 81 l~~~p~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 81 LQKAPN--NV----DCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHCTT--CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHCCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 776443 33 34556789999999999999999999986
No 120
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=92.83 E-value=5.8 Score=36.50 Aligned_cols=64 Identities=11% Similarity=-0.046 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 137 le~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
...+.....+|...+++.+|..+++++...... ++ ..+...|.++...++|.+|-..|..+...
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~--~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 280 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN--DY----LLWNKLGATLANGNQSEEAVAAYRRALEL 280 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456677778888888888888888887655322 22 24556777778888888888888777764
No 121
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=92.82 E-value=0.8 Score=40.24 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=72.3
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH-H
Q 015984 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL-N 176 (397)
Q Consensus 98 l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l-~ 176 (397)
....+|..+...|+|++|...+..+.... . +.....+.++.....|...+|+.+|...++++....... +.. .
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~--p--~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~--~~~~~ 79 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRY--P--FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH--PNIDY 79 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T--TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--TTHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C--CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC--CcHHH
Confidence 34678899999999999999999976432 1 122345678888999999999999999999987765442 221 1
Q ss_pred HHHHHHHHHHHHH------------------HHhHHHHHHHHHHHHHhh
Q 015984 177 LQYKVCYARILDL------------------KRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 177 ~~~~~~~~~~~~~------------------~r~f~~Aa~~y~e~~~~~ 207 (397)
..|. .|..+.. .+++.+|...|..+...+
T Consensus 80 a~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 80 VMYM--RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp HHHH--HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred HHHH--HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 2222 2333322 578999999998888764
No 122
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=92.80 E-value=0.96 Score=39.58 Aligned_cols=97 Identities=8% Similarity=-0.142 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.....+|..+...|++++|...+...... ++ .-.+.+.....++...+++..|...++++...-.. ++.
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~--~~~-- 74 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKE------NP-QDPEALYWLARTQLKLGLVNPALENGKTLVARTPR--YLG-- 74 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT------SS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHH--
Confidence 34567899999999999999999885421 11 12467888899999999999999999998776433 332
Q ss_pred HHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHh
Q 015984 177 LQYKVCYARILDLK-----------RKFLEAALRYYDISQI 206 (397)
Q Consensus 177 ~~~~~~~~~~~~~~-----------r~f~~Aa~~y~e~~~~ 206 (397)
.+...|.++... ++|.+|-..|..+...
T Consensus 75 --a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 113 (217)
T 2pl2_A 75 --GYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV 113 (217)
T ss_dssp --HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh
Confidence 344567777788 9999999999999885
No 123
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=92.80 E-value=2 Score=41.68 Aligned_cols=91 Identities=15% Similarity=0.113 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHH
Q 015984 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (397)
Q Consensus 100 ~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~ 179 (397)
..+|.+|...|++++|...+.....-. .. -.+.+...+.+|...+++..|..+++++...... ++ ..
T Consensus 308 ~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~ 374 (514)
T 2gw1_A 308 YHRGQMNFILQNYDQAGKDFDKAKELD--PE-----NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE--AP----EV 374 (514)
T ss_dssp HHHHHHHHHTTCTTHHHHHHHHHHHTC--SS-----CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT--CS----HH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC--hh-----hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc--CH----HH
Confidence 445555555555555555555432111 00 0124444455555555555555555554433221 11 12
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Q 015984 180 KVCYARILDLKRKFLEAALRYYDI 203 (397)
Q Consensus 180 ~~~~~~~~~~~r~f~~Aa~~y~e~ 203 (397)
+...|.++...++|.+|...|..+
T Consensus 375 ~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 375 PNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 233444445555555555555443
No 124
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=92.28 E-value=5.2 Score=34.68 Aligned_cols=96 Identities=16% Similarity=0.030 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhh-----------hcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcc
Q 015984 97 IIREKLADLYESE-----------QQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASF 165 (397)
Q Consensus 97 ~l~~~La~~~e~~-----------~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~ 165 (397)
.....||.+|... |++++|...+....--. + .-.+.+.....++...+++.+|...++++..
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~------P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 146 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN------P-RYAPLHLQRGLVYALLGERDKAEASLKQALA 146 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC------c-ccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 4556788888888 99999999988754321 1 1236778889999999999999999999877
Q ss_pred cccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 166 LVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.- . +++ .+...|.++...++|.+|-..|..+...
T Consensus 147 ~~-~--~~~----~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 147 LE-D--TPE----IRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp HC-C--CHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cc-c--chH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 65 2 343 3456888999999999999999998885
No 125
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=91.70 E-value=0.77 Score=45.83 Aligned_cols=97 Identities=8% Similarity=-0.024 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhc---------CChHHHHHHHHHhccc
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED---------DDAVNAEAFINKASFL 166 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~---------~d~~~A~~~l~ka~~~ 166 (397)
......||.+|...|++++|.+.+.....- ++. ...+.....+|... +++.+|..+++++...
T Consensus 137 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~--~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 137 VEAWNQLGEVYWKKGDVTSAHTCFSGALTH------CKN--KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTT------CCC--HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCC--HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 356688999999999999999999885522 222 37888899999999 9999999999998876
Q ss_pred ccCcchHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHh
Q 015984 167 VSSSQQEVLNLQYKVCYARILDLK--------RKFLEAALRYYDISQI 206 (397)
Q Consensus 167 ~~~~~~~~l~~~~~~~~~~~~~~~--------r~f~~Aa~~y~e~~~~ 206 (397)
... ++. .+...|..+... ++|.+|..+|..+...
T Consensus 209 ~p~--~~~----~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 250 (474)
T 4abn_A 209 DVL--DGR----SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV 250 (474)
T ss_dssp CTT--CHH----HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCC--CHH----HHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence 443 332 445677778888 9999999999999885
No 126
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=91.69 E-value=1.4 Score=46.96 Aligned_cols=97 Identities=11% Similarity=-0.021 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
..-..||.+|.+.|++++|.+.+.....-. + .-.+.+.....+|...+++.+|..+++++...-.. ++
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~------P-~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~--~~--- 77 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEVF------P-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT--FA--- 77 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------S-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH---
Confidence 344667888888888888888877643211 1 11356667777888888888888888887665332 22
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+|-.+|..+...
T Consensus 78 -~a~~nLg~~l~~~g~~~~A~~~~~kAl~l 106 (723)
T 4gyw_A 78 -DAYSNMGNTLKEMQDVQGALQCYTRAIQI 106 (723)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23455677778888888888888777764
No 127
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=91.57 E-value=3.8 Score=37.48 Aligned_cols=97 Identities=10% Similarity=-0.042 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.....+|..+...|++++|...+....... + .-.+.+...+++++..|++..|...+.++...-. ++.
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~------P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p---~~~-- 185 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQLS------N-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ---DTR-- 185 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHT------T-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC---SHH--
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHhC------C-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc---chH--
Confidence 455789999999999999999999865322 1 1246788889999999999999999999866533 221
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
......+..+...+++.+|...|..+...
T Consensus 186 -~~~~~~~~~l~~~~~~~~a~~~l~~al~~ 214 (287)
T 3qou_A 186 -YQGLVAQIELLXQAADTPEIQQLQQQVAE 214 (287)
T ss_dssp -HHHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhhcccCccHHHHHHHHhc
Confidence 12333444567778888888888888775
No 128
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=91.55 E-value=0.71 Score=41.82 Aligned_cols=104 Identities=10% Similarity=-0.040 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchH---
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE--- 173 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~--- 173 (397)
.....+|.+|...|++++|.+.+.....-. . .-.+.+...+++|...+++..|..++.++........++
T Consensus 207 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~---~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 279 (327)
T 3cv0_A 207 QLWNKLGATLANGNRPQEALDAYNRALDIN---P----GYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGE 279 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---C----CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcccccccc
Confidence 556789999999999999999998854321 1 124577888999999999999999999987665432111
Q ss_pred ---HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 174 ---VLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 174 ---~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
......+...|..+...+++.+|...|......+
T Consensus 280 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 316 (327)
T 3cv0_A 280 ASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPF 316 (327)
T ss_dssp -CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHHH
T ss_pred chhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhc
Confidence 1145567788999999999999998886655543
No 129
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=91.49 E-value=1.3 Score=33.75 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccc
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~ 167 (397)
.+...+|.+|...|++++|...+....--......+.......+.....+|...+++..|..++.++....
T Consensus 39 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 39 TYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 55678999999999999999998875432211111223347888999999999999999999999987753
No 130
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=91.43 E-value=0.85 Score=46.21 Aligned_cols=94 Identities=13% Similarity=0.004 Sum_probs=39.5
Q ss_pred HHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHH
Q 015984 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (397)
Q Consensus 99 ~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~ 178 (397)
...+|..|...|++++|.+.+.....- ++ .-.+.+.....+|...+++.+|..+++++...... ++ .
T Consensus 26 ~~~lg~~~~~~g~~~~A~~~~~~al~~------~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~----~ 92 (568)
T 2vsy_A 26 WLMLADAELGMGDTTAGEMAVQRGLAL------HP-GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPE--HP----G 92 (568)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTT------ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CH----H
Confidence 344455555555555555544443211 00 11234444444455555555555555544433211 11 1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015984 179 YKVCYARILDLKRKFLEAALRYYDISQ 205 (397)
Q Consensus 179 ~~~~~~~~~~~~r~f~~Aa~~y~e~~~ 205 (397)
.+...|.++...++|.+|...|..+..
T Consensus 93 ~~~~la~~~~~~g~~~~A~~~~~~al~ 119 (568)
T 2vsy_A 93 IALWLGHALEDAGQAEAAAAAYTRAHQ 119 (568)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 223334444444445444444444443
No 131
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=91.37 E-value=1.9 Score=37.33 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccC
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~ 169 (397)
.+...||.+|...|++++|...+....--. + .-.+.+.....++...+++..|...++++...-..
T Consensus 55 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~ 120 (208)
T 3urz_A 55 KLATELALAYKKNRNYDKAYLFYKELLQKA------P-NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD 120 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 455679999999999999999988754221 1 12467888899999999999999999998776443
No 132
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=91.27 E-value=1.1 Score=33.93 Aligned_cols=65 Identities=14% Similarity=0.066 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhccccc
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~ 168 (397)
.....||.+|...|+|++|.+.+.....-. + .-...+.....+|...+++..|..+++++.....
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETD------P-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------T-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 566789999999999999999998854321 1 1124788889999999999999999999876643
No 133
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=91.20 E-value=0.62 Score=33.69 Aligned_cols=70 Identities=14% Similarity=0.092 Sum_probs=55.1
Q ss_pred CchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 131 IDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 131 ~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
+++....+.+......+...+++.+|..+++++...... ++ ..+...|.++...++|.+|..+|.++...
T Consensus 3 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~--~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC--CH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 344456778889999999999999999999998765432 22 34556788999999999999999998875
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=91.16 E-value=1.6 Score=41.23 Aligned_cols=100 Identities=17% Similarity=-0.040 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchH
Q 015984 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (397)
Q Consensus 94 q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~ 173 (397)
..+.+...||.+|...|+|++|...+....--. + .-...+.....+|...+++..|..+++++...... ++
T Consensus 194 ~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~------p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~ 264 (336)
T 1p5q_A 194 LRLASHLNLAMCHLKLQAFSAAIESCNKALELD------S-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN--NK 264 (336)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS--CH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC--CH
Confidence 345777889999999999999999998854321 1 12467888999999999999999999999876543 33
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHh
Q 015984 174 VLNLQYKVCYARILDLKRKFLEAAL-RYYDISQI 206 (397)
Q Consensus 174 ~l~~~~~~~~~~~~~~~r~f~~Aa~-~y~e~~~~ 206 (397)
. .+...|.++...+++.+|.+ .|...+..
T Consensus 265 ~----a~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 294 (336)
T 1p5q_A 265 A----AKTQLAVCQQRIRRQLAREKKLYANMFER 294 (336)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 34556777788888988844 44555543
No 135
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=90.86 E-value=2.2 Score=38.77 Aligned_cols=81 Identities=19% Similarity=0.212 Sum_probs=55.0
Q ss_pred cChhhHHHHHHHhchhhhhhCCCchhhHHHHHHHHHHHHHHhhccccCHHHHHHHhC-CChHHHHHHHHHhHhcCceEEE
Q 015984 272 LRKPEIDAFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLG-IAPQKAEKIASRMIFEDRMRGS 350 (397)
Q Consensus 272 i~~~~l~~F~~~L~~h~~~~~~d~~~~L~~~v~EhNl~~is~~Y~~Isl~~La~ll~-ls~~~~E~~ls~mI~~grl~gk 350 (397)
+..++...|.+.++.....+ .....|..+|++.-...+++.|++|+++.++++|| ++++++++.+.+- |.
T Consensus 109 L~~~~y~~fW~~l~~~~~l~--~~i~gf~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~~-------GW 179 (226)
T 1rz4_A 109 LETCHFQAFWQALDENMDLL--EGITGFEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKY-------GW 179 (226)
T ss_dssp HHTTCHHHHHHHSCTTCHHH--HTSTTHHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHH-------TC
T ss_pred HHcCCHHHHHHHHhcChhHH--HHHhHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHHC-------CC
Confidence 33466667776665421111 01134778888888888999999999999999995 8898888887762 44
Q ss_pred -eccCCcEEEECC
Q 015984 351 -IDQVEAVIHFED 362 (397)
Q Consensus 351 -IDQv~giV~f~~ 362 (397)
+| .+|.|.|..
T Consensus 180 ~vd-~~g~I~~~n 191 (226)
T 1rz4_A 180 SAD-ESGQIFICS 191 (226)
T ss_dssp EEC-C--CEECCC
T ss_pred EEC-CCccEEeCC
Confidence 44 667777754
No 136
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=90.85 E-value=0.95 Score=45.14 Aligned_cols=98 Identities=11% Similarity=-0.068 Sum_probs=75.6
Q ss_pred hhhcHHHHHHHHhhchhccCCCCCchh--HHHHHHHHHHHHHhhcCChHHHHHHHHHhcccc---cCcchHHHHHHHHHH
Q 015984 108 SEQQWSKAAQMLSGIDLDSGMRVIDDT--FRLSKCVQIARLYLEDDDAVNAEAFINKASFLV---SSSQQEVLNLQYKVC 182 (397)
Q Consensus 108 ~~~d~~~Aa~~L~~i~~et~~~~~~~~--~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~---~~~~~~~l~~~~~~~ 182 (397)
..|+|++|..++.....-. .+.+.+. .-+..+-..+.+|...|+|.+|..+..++.... +..++|++-..|. -
T Consensus 310 ~~g~~~eA~~~~~~~L~i~-~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~-n 387 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKM-SSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWL-K 387 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHH-TTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH-H
T ss_pred hccCHHHHHHHHHHHHHHh-hCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHH-H
Confidence 4678999999987754322 2445554 478888899999999999999999999986654 3446777655444 5
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 183 YARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 183 ~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
.|.+|..+++|.+|-..|..++...
T Consensus 388 La~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 388 LGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHH
Confidence 7888999999999999998888754
No 137
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=90.55 E-value=2.6 Score=41.99 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=74.5
Q ss_pred hHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchh--ccCCCCCchhHHHHHHHHHHHHH
Q 015984 70 PETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDL--DSGMRVIDDTFRLSKCVQIARLY 147 (397)
Q Consensus 70 ~~~~~~~~~~~l~~~~~~~~~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~--et~~~~~~~~~kle~~L~i~Rl~ 147 (397)
-+....+++.+|+.-..---.--..++.....||.+|...|+|++|..++..... +..++. +.-.-...+...+.+|
T Consensus 314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~-~Hp~~a~~l~nLa~~~ 392 (433)
T 3qww_A 314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPV-YSLNVASMWLKLGRLY 392 (433)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCC-CChHHHHHHHHHHHHH
Confidence 3455677777776543222222234567788999999999999999999887542 111222 3335778889999999
Q ss_pred hhcCChHHHHHHHHHhccccc---CcchHHHH
Q 015984 148 LEDDDAVNAEAFINKASFLVS---SSQQEVLN 176 (397)
Q Consensus 148 L~~~d~~~A~~~l~ka~~~~~---~~~~~~l~ 176 (397)
...+++.+|..++.||..... ..++|..+
T Consensus 393 ~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 424 (433)
T 3qww_A 393 MGLENKAAGEKALKKAIAIMEVAHGKDHPYIS 424 (433)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred HhccCHHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence 999999999999999877653 33456543
No 138
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=90.34 E-value=1.8 Score=43.00 Aligned_cols=109 Identities=9% Similarity=-0.018 Sum_probs=74.3
Q ss_pred CCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchh--ccCCCCCchhHHHHHHHHHH
Q 015984 67 RLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDL--DSGMRVIDDTFRLSKCVQIA 144 (397)
Q Consensus 67 ~l~~~~~~~~~~~~l~~~~~~~~~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~--et~~~~~~~~~kle~~L~i~ 144 (397)
+-..+...++++.+|+.-..---.--...++....||.+|...|+|++|......... +..++. +.......+...+
T Consensus 300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~-~Hp~~a~~l~nLa 378 (429)
T 3qwp_A 300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPG-SHPVRGVQVMKVG 378 (429)
T ss_dssp TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCS-SCHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCC-CChHHHHHHHHHH
Confidence 4455566777777775432211112234568889999999999999999999887542 111222 3335677888999
Q ss_pred HHHhhcCChHHHHHHHHHhccccc---CcchHHHH
Q 015984 145 RLYLEDDDAVNAEAFINKASFLVS---SSQQEVLN 176 (397)
Q Consensus 145 Rl~L~~~d~~~A~~~l~ka~~~~~---~~~~~~l~ 176 (397)
.+|...+++..|..++.||..... ..++|...
T Consensus 379 ~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 379 KLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 999999999999999999876653 23455443
No 139
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=90.25 E-value=5.4 Score=34.07 Aligned_cols=113 Identities=14% Similarity=-0.001 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchh-ccCC---CCCch-hHHHHHHHHHHHHHhhcCChHHHHHHHHHhccccc--
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDL-DSGM---RVIDD-TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS-- 168 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~-et~~---~~~~~-~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~-- 168 (397)
+..-..++..+...|+|++|...+....- ...+ ...+. ......|......+...+++..|-...+++...+.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 34446678888899999999988776432 2100 00011 12344888999999999999999999999987621
Q ss_pred ---CcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 015984 169 ---SSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (397)
Q Consensus 169 ---~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~ 208 (397)
..++.+.-+.=+...|..+...++|.+|-.+|..+....+
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 1112222111124578889999999999999999988644
No 140
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=89.97 E-value=0.76 Score=45.71 Aligned_cols=101 Identities=12% Similarity=0.040 Sum_probs=76.6
Q ss_pred HHhhhcHHHHHHHHhhchhccCCCCCchh--HHHHHHHHHHHHHhhcCChHHHHHHHHHhcccc---cCcchHHHHHHHH
Q 015984 106 YESEQQWSKAAQMLSGIDLDSGMRVIDDT--FRLSKCVQIARLYLEDDDAVNAEAFINKASFLV---SSSQQEVLNLQYK 180 (397)
Q Consensus 106 ~e~~~d~~~Aa~~L~~i~~et~~~~~~~~--~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~---~~~~~~~l~~~~~ 180 (397)
+...|+|++|..++..... ...+.+.+. .-+..+-..+.+|...++|.+|..+..|+.... +...+|++-..+
T Consensus 297 ~~~~g~~~~a~~~~~~~L~-~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l- 374 (429)
T 3qwp_A 297 LKAHWKWEQVLAMCQAIIS-SNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV- 374 (429)
T ss_dssp HHHTTCHHHHHHHHHHHHT-CSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH-
T ss_pred HHhhccHHHHHHHHHHHHH-hccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH-
Confidence 3367899999998877542 212445554 478888999999999999999999999986654 344677764444
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 015984 181 VCYARILDLKRKFLEAALRYYDISQIQK 208 (397)
Q Consensus 181 ~~~~~~~~~~r~f~~Aa~~y~e~~~~~~ 208 (397)
.-.|.+|...++|.+|-.+|..++....
T Consensus 375 ~nLa~~~~~~g~~~eA~~~~~~Al~i~~ 402 (429)
T 3qwp_A 375 MKVGKLQLHQGMFPQAMKNLRLAFDIMR 402 (429)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4577889999999999999988887543
No 141
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=89.82 E-value=0.53 Score=44.83 Aligned_cols=106 Identities=8% Similarity=-0.113 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhhchh-ccCC---CCCc------hhHHHHHHHHHHHHHhhcCChHHHHHHHHHhc
Q 015984 95 VLIIREKLADLYESEQQWSKAAQMLSGIDL-DSGM---RVID------DTFRLSKCVQIARLYLEDDDAVNAEAFINKAS 164 (397)
Q Consensus 95 ~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~-et~~---~~~~------~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~ 164 (397)
.+.....+|..|...|+|.+|...+..... .... .... ...+...++....+|+..+++..|..+++++.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al 257 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVL 257 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 345567889999999999999998887432 1100 0000 01123578899999999999999999999987
Q ss_pred ccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 165 FLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 165 ~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..-.. + ...+...|..|...++|.+|-.+|..+...
T Consensus 258 ~~~p~--~----~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 258 TEEEK--N----PKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHCTT--C----HHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HhCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 65332 2 234556788899999999999999888764
No 142
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=89.78 E-value=1.6 Score=33.67 Aligned_cols=72 Identities=11% Similarity=-0.047 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccC
Q 015984 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (397)
Q Consensus 98 l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~ 169 (397)
-...||..+...|+|..|...+.....-..........+.+++......|...|++..|..+.+++......
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~ 78 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE 78 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC
Confidence 457899999999999999999887542110011112346788888999999999999999999999765443
No 143
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=89.73 E-value=13 Score=34.67 Aligned_cols=93 Identities=17% Similarity=0.023 Sum_probs=40.6
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHH
Q 015984 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (397)
Q Consensus 100 ~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~ 179 (397)
..++.+|...|++++|.+.+.....-. . .-.+.+.....++...+++..|...++++...... +++ .
T Consensus 241 ~~l~~~~~~~g~~~~A~~~~~~al~~~---p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~----~ 307 (388)
T 1w3b_A 241 GNLACVYYEQGLIDLAIDTYRRAIELQ---P----HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPT--HAD----S 307 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTC---S----SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTT--CHH----H
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC---C----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc--cHH----H
Confidence 344555555555555555554432110 0 01123444445555555555555555554433211 111 2
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015984 180 KVCYARILDLKRKFLEAALRYYDISQ 205 (397)
Q Consensus 180 ~~~~~~~~~~~r~f~~Aa~~y~e~~~ 205 (397)
+...|.++...++|.+|-..|.++..
T Consensus 308 ~~~l~~~~~~~g~~~~A~~~~~~al~ 333 (388)
T 1w3b_A 308 LNNLANIKREQGNIEEAVRLYRKALE 333 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 22344444555555555555544443
No 144
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=89.58 E-value=1.4 Score=41.47 Aligned_cols=92 Identities=9% Similarity=-0.023 Sum_probs=59.4
Q ss_pred HHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHH
Q 015984 102 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKV 181 (397)
Q Consensus 102 La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~ 181 (397)
+|..+...|++++|.+.+..+.... + .-...+.....+++..+++.+|..+.+++...... + ...+.
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~-----p--~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~--~----~~~~~ 71 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE-----P--DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL--L----AEAYS 71 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-----T--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-----C--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--c----hHHHH
Confidence 6777888888888888887654221 1 11245566677777778888887777776543221 1 22455
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 182 CYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 182 ~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..|..+...++|.+|-..|..+...
T Consensus 72 ~lg~~~~~~g~~~~A~~~~~~al~~ 96 (388)
T 1w3b_A 72 NLGNVYKERGQLQEAIEHYRHALRL 96 (388)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 5667777777777777777766653
No 145
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=89.54 E-value=1.5 Score=33.59 Aligned_cols=65 Identities=12% Similarity=0.038 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhccccc
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~ 168 (397)
.....||.+|...|++++|.+.+.....-. + .-.+.+.....+|...+++..|..++.++.....
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 84 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFD------P-TYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQ 84 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHC------C-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 566789999999999999999988754221 1 1245778889999999999999999999876543
No 146
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=89.45 E-value=2 Score=33.17 Aligned_cols=69 Identities=6% Similarity=0.010 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccC
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~ 169 (397)
.....+|.+|...|+|++|...+....... . +.....+.+....+++...+++.+|..+++++......
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~ 108 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRY--P--THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPG 108 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T--TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHC--C--CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 455779999999999999999998865322 1 12234677888999999999999999999998776543
No 147
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=88.96 E-value=1.4 Score=44.57 Aligned_cols=99 Identities=11% Similarity=-0.014 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
......||.+|...|++++|.+.+.....-. + .-.+.+.....+|...+++.+|..+++++...... ++
T Consensus 57 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~-- 125 (568)
T 2vsy_A 57 PEAVARLGRVRWTQQRHAEAAVLLQQASDAA------P-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE--EP-- 125 (568)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH--
Confidence 3566789999999999999999998854321 1 12567888899999999999999999998776433 33
Q ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHhh
Q 015984 176 NLQYKVCYARILDLK---RKFLEAALRYYDISQIQ 207 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~---r~f~~Aa~~y~e~~~~~ 207 (397)
..+...|.++... +++.+|...|.++....
T Consensus 126 --~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 126 --YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp --HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 2445577788888 99999999999988753
No 148
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=88.91 E-value=0.77 Score=45.83 Aligned_cols=98 Identities=11% Similarity=0.016 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHhhhcH-HHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchH
Q 015984 95 VLIIREKLADLYESEQQW-SKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (397)
Q Consensus 95 ~~~l~~~La~~~e~~~d~-~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~ 173 (397)
.+.....+|..|...|+| ++|.+.+....... + .-.+.+.....+|...+++.+|..++.++..... +
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~------p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~- 169 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE------P-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCK---N- 169 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC---C-
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC------C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---C-
Confidence 457778899999999999 99999998854321 1 1246888999999999999999999999977632 2
Q ss_pred HHHHHHHHHHHHHHHHH---------HhHHHHHHHHHHHHHh
Q 015984 174 VLNLQYKVCYARILDLK---------RKFLEAALRYYDISQI 206 (397)
Q Consensus 174 ~l~~~~~~~~~~~~~~~---------r~f~~Aa~~y~e~~~~ 206 (397)
...+...|.++... ++|.+|-..|.++...
T Consensus 170 ---~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 208 (474)
T 4abn_A 170 ---KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM 208 (474)
T ss_dssp ---HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh
Confidence 25666778888888 9999999999999885
No 149
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=88.89 E-value=1.3 Score=47.28 Aligned_cols=97 Identities=12% Similarity=0.024 Sum_probs=63.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.....||.+|...|++++|...+..... . ++ .-.+.+.....++...+++..|...++|+...-.. +.
T Consensus 44 ~a~~nLg~~l~~~g~~~eA~~~~~~Al~-l-----~P-~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~--~~--- 111 (723)
T 4gyw_A 44 AAHSNLASVLQQQGKLQEALMHYKEAIR-I-----SP-TFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA--FA--- 111 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH-h-----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH---
Confidence 4456677888888888888777766321 1 11 12456677777777888888888888777654322 22
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+|-.+|..+...
T Consensus 112 -~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l 140 (723)
T 4gyw_A 112 -DAHSNLASIHKDSGNIPEAIASYRTALKL 140 (723)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23445677777778888888777777764
No 150
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=88.76 E-value=1.7 Score=42.01 Aligned_cols=110 Identities=12% Similarity=0.042 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhch---hccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCc--
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGID---LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS-- 170 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~---~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~-- 170 (397)
+++...||.+|...|++++|.+.++.-. .+. ...-.+...+..+-....+|...|++.+|..+++|+.......
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~-~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~ 129 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQE-HADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS 129 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH-SGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhc-CccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence 3566779999999999999998887521 111 0111122345677788999999999999999999986543211
Q ss_pred -chHHH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 171 -QQEVL-NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 171 -~~~~l-~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.+++. ........+.+....++|.+|-.+|..+...
T Consensus 130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~ 167 (472)
T 4g1t_A 130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK 167 (472)
T ss_dssp SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh
Confidence 11111 1111122334445567899999999988875
No 151
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=88.65 E-value=2.2 Score=32.35 Aligned_cols=65 Identities=15% Similarity=-0.029 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhccccc
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~ 168 (397)
.....+|.+|...|++++|...+....... . .-...+....++|...+++..|..++.++.....
T Consensus 47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 47 VYFCNRAAAYSKLGNYAGAVQDCERAICID---P----AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhhchHHHHHHHHHHHhcC---c----cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc
Confidence 456789999999999999999998865322 1 1145778889999999999999999999876643
No 152
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=88.42 E-value=2.1 Score=31.63 Aligned_cols=86 Identities=13% Similarity=-0.040 Sum_probs=60.6
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHH-HHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHH
Q 015984 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLS-KCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (397)
Q Consensus 100 ~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle-~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~ 178 (397)
..+|..+...|+|.+|.+.+....-.. +.. .. .+.....+|...+++..|..++.++...... ++...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~------p~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~~-- 72 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTE------PVG-KDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPD--SPALQ-- 72 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC------SST-HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHH--
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC------CCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--cHHHH--
Confidence 457888999999999999998854321 111 24 7788899999999999999999998876443 22221
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 179 YKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 179 ~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+.+.+|..+|..+...
T Consensus 73 ----------~~~~~~~a~~~~~~~~~~ 90 (99)
T 2kc7_A 73 ----------ARKMVMDILNFYNKDMYN 90 (99)
T ss_dssp ----------HHHHHHHHHHHHCCTTHH
T ss_pred ----------HHHHHHHHHHHHHHHhcc
Confidence 116666776776555443
No 153
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=88.24 E-value=6 Score=32.83 Aligned_cols=94 Identities=11% Similarity=-0.035 Sum_probs=62.7
Q ss_pred HHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHH
Q 015984 99 REKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQ 178 (397)
Q Consensus 99 ~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~ 178 (397)
...+|..+...|++++|...+...... + ..-.+.+....++++..|++..|...++++..... ++..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~------~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p---~~~~--- 75 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE------L-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ---DNSY--- 75 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH------H-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC---CHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH------C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC---ChHH---
Confidence 356889999999999999999885421 1 12356788889999999999999999999865433 2322
Q ss_pred HHHHHHHHHH-HHHhHHHHHHHHHHHHHh
Q 015984 179 YKVCYARILD-LKRKFLEAALRYYDISQI 206 (397)
Q Consensus 179 ~~~~~~~~~~-~~r~f~~Aa~~y~e~~~~ 206 (397)
....+.+.. ...+..+|-..|..+...
T Consensus 76 -~~~~~~~~~~~~~~~~~a~~~~~~al~~ 103 (176)
T 2r5s_A 76 -KSLIAKLELHQQAAESPELKRLEQELAA 103 (176)
T ss_dssp -HHHHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhhcccchHHHHHHHHHHh
Confidence 222333322 223344456666666654
No 154
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=87.90 E-value=2.1 Score=33.30 Aligned_cols=64 Identities=8% Similarity=-0.115 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccc
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~ 167 (397)
.+...+|..|...|+|++|...+.....-. + .-...+.....++...+++..|...++++....
T Consensus 39 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~------p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 39 RGYSNRAAALAKLMSFPEAIADCNKAIEKD------P-NFVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------C-CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 667889999999999999999988754221 1 124678889999999999999999999987765
No 155
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=87.70 E-value=3 Score=41.34 Aligned_cols=96 Identities=13% Similarity=-0.003 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcch
Q 015984 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ 172 (397)
Q Consensus 93 ~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~ 172 (397)
.....+...+|..|...|+|++|...+....--. + .-...+....+.|+..+++..|..+++++...-.. +
T Consensus 314 ~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~------p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~--~ 384 (457)
T 1kt0_A 314 SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD------S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ--N 384 (457)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC------C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--C
Confidence 3345777889999999999999999988854221 1 12567888999999999999999999999776432 2
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015984 173 EVLNLQYKVCYARILDLKRKFLEAALRYY 201 (397)
Q Consensus 173 ~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~ 201 (397)
+. .+...+.++...+++.+|.+..+
T Consensus 385 ~~----a~~~l~~~~~~~~~~~~a~~~~~ 409 (457)
T 1kt0_A 385 KA----ARLQISMCQKKAKEHNERDRRIY 409 (457)
T ss_dssp -C----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 34455666777778877765543
No 156
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=87.57 E-value=0.86 Score=45.70 Aligned_cols=94 Identities=15% Similarity=-0.047 Sum_probs=71.0
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHH
Q 015984 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQY 179 (397)
Q Consensus 100 ~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~ 179 (397)
..+|..|...|+|++|.+.+.....-. + .-...+......|...+++.+|..+++++...-.. ++ ..
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~--~~----~~ 76 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELN------P-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK--YI----KG 76 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CH----HH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC------C-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC--CH----HH
Confidence 345677888899999999888754221 1 12567888899999999999999999998776332 22 24
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 180 KVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 180 ~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
+...|..+...++|.+|-..|..+...
T Consensus 77 ~~~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 77 YYRRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456788889999999999999888875
No 157
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=87.43 E-value=0.93 Score=34.10 Aligned_cols=37 Identities=5% Similarity=0.032 Sum_probs=33.5
Q ss_pred HhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceE
Q 015984 312 SKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (397)
Q Consensus 312 s~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~ 348 (397)
.+-...+++++||+.|++|+.-+...+..+...|.+.
T Consensus 11 L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 11 LALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 3446899999999999999999999999999999874
No 158
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=87.38 E-value=3.2 Score=33.97 Aligned_cols=67 Identities=15% Similarity=-0.005 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccC
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~ 169 (397)
..+...+|.+|...|+|++|...+.....-. + .-...+.....+|...+++..|..+++++......
T Consensus 45 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 111 (164)
T 3sz7_A 45 PIYLSNRAAAYSASGQHEKAAEDAELATVVD------P-KYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGN 111 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 3566789999999999999999988754211 1 12567888999999999999999999999877654
No 159
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=87.11 E-value=6.3 Score=27.94 Aligned_cols=65 Identities=14% Similarity=0.064 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccc
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~ 167 (397)
+.....+|..|...|++++|.+.+.....-. . .-...+.....++...+++.+|..++.++....
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~---~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD---P----NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---T----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcC---C----CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 3556789999999999999999988754321 1 124577888999999999999999999987654
No 160
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=86.90 E-value=1.8 Score=33.44 Aligned_cols=70 Identities=11% Similarity=-0.012 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccC
Q 015984 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSS 169 (397)
Q Consensus 93 ~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~ 169 (397)
.........||.+|...|++++|.+.+....... +. -.+.+.....++...+++.+|..++.++......
T Consensus 24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 93 (117)
T 3k9i_A 24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF------PN-HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSD 93 (117)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC
T ss_pred ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3445777899999999999999999998864321 11 1567788899999999999999999998776543
No 161
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=86.89 E-value=2 Score=35.25 Aligned_cols=85 Identities=11% Similarity=0.048 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcc
Q 015984 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ 171 (397)
Q Consensus 92 e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~ 171 (397)
......+...+|..|...|+|.+|...+....-- ++ .-...+......|...+++..|...++++...-..
T Consensus 59 ~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~------~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~-- 129 (162)
T 3rkv_A 59 DRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR------EE-TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA-- 129 (162)
T ss_dssp HHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------ST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG--
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc------CC-cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC--
Confidence 3444577788999999999999999988775421 11 12467888999999999999999999999876433
Q ss_pred hH-HHHHHHHHHHHH
Q 015984 172 QE-VLNLQYKVCYAR 185 (397)
Q Consensus 172 ~~-~l~~~~~~~~~~ 185 (397)
++ .+...+..+..+
T Consensus 130 ~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 130 AASVVAREMKIVTER 144 (162)
T ss_dssp GHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHH
Confidence 44 555555544433
No 162
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=86.81 E-value=18 Score=33.65 Aligned_cols=101 Identities=11% Similarity=-0.058 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHH
Q 015984 98 IREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNL 177 (397)
Q Consensus 98 l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~ 177 (397)
....+|.++.+.|+|.+|...+..... .-+.....+.++..-+.+-..|++..|...+.++..-. .+|....
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~-----~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~---~~P~~~~ 208 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGK-----WPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP---AGEACAR 208 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGG-----CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST---TTTTTHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhc-----cCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC---CCccccH
Confidence 668889999999999999999985321 11333355677777888999999999999999986321 1132233
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 178 QYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 178 ~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.-..+.|..+...+++.+|...|..+...
T Consensus 209 da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 209 AIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33456888889999999999999999986
No 163
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=86.79 E-value=3.6 Score=31.12 Aligned_cols=63 Identities=11% Similarity=0.214 Sum_probs=44.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEec---cCCcEEEECC-cchHHHHHHHHHHHHH
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID---QVEAVIHFED-DTEELQQWDQQIVGLC 378 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkID---Qv~giV~f~~-~~~~l~~w~~~I~~l~ 378 (397)
..+++.+||+.+|+++.-+-..+.+|...|-+...-+ +....+.... ..+.+..|-..+..+.
T Consensus 29 ~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~~~~~~~~~~~ 95 (100)
T 1ub9_A 29 RKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAKRFLSSLKAVI 95 (100)
T ss_dssp SEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHHHHHHHHHHHH
Confidence 5799999999999999999999999999999987763 3322333332 1233444544444443
No 164
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=86.66 E-value=1.5 Score=32.64 Aligned_cols=38 Identities=8% Similarity=0.188 Sum_probs=35.2
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccC
Q 015984 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354 (397)
Q Consensus 317 ~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv 354 (397)
.+|..+||+.||+|...|...|.+|..+|.|.+.-+.+
T Consensus 31 ~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~ 68 (77)
T 1qgp_A 31 ATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP 68 (77)
T ss_dssp CEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSS
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC
Confidence 89999999999999999999999999999998876554
No 165
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=86.65 E-value=2.2 Score=32.23 Aligned_cols=65 Identities=12% Similarity=-0.011 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 137 le~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
...+.....+|+..+++..|..++.++...-.. ++. .+...|.++...++|.+|...|..+....
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPD--YVG----TYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CTH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 457788899999999999999999998776433 222 56678999999999999999998888753
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=86.63 E-value=2.9 Score=35.44 Aligned_cols=89 Identities=12% Similarity=0.059 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
..+...+|..|...|+|++|...+.....-. + .-...+.....+|...+++..|..++.++...... ++..
T Consensus 88 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~------p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~~~ 158 (198)
T 2fbn_A 88 ISCNLNLATCYNKNKDYPKAIDHASKVLKID------K-NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN--NLDI 158 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------T-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------c-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cHHH
Confidence 3667789999999999999999988754321 1 12467888999999999999999999998766433 4433
Q ss_pred HHHHHHHHHHHHHHHHhHHHHH
Q 015984 176 NLQYKVCYARILDLKRKFLEAA 197 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa 197 (397)
+...+.++...+++.++-
T Consensus 159 ----~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 159 ----RNSYELCVNKLKEARKKD 176 (198)
T ss_dssp ----HHHHHHHHHHHHHHHC--
T ss_pred ----HHHHHHHHHHHHHHHHHH
Confidence 333455556666776666
No 167
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=86.55 E-value=3.5 Score=43.11 Aligned_cols=92 Identities=13% Similarity=-0.024 Sum_probs=69.9
Q ss_pred HhhhcHHHHHHHHhhchh---ccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHH
Q 015984 107 ESEQQWSKAAQMLSGIDL---DSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCY 183 (397)
Q Consensus 107 e~~~d~~~Aa~~L~~i~~---et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~ 183 (397)
...|++++|.+.+....- +. .... +..-.+.++...+.++..+++..|...++++...-.. ++ ..+...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~-~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~----~a~~~l 473 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDA-DGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW--RW----RLVWYR 473 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC--------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC--CH----HHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccc-cccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc--hH----HHHHHH
Confidence 678999999999988640 00 0011 1123568889999999999999999999998876433 33 355678
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHh
Q 015984 184 ARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 184 ~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
|.++...++|.+|...|..+...
T Consensus 474 g~~~~~~g~~~~A~~~~~~al~l 496 (681)
T 2pzi_A 474 AVAELLTGDYDSATKHFTEVLDT 496 (681)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999986
No 168
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=86.32 E-value=2.8 Score=30.88 Aligned_cols=67 Identities=10% Similarity=-0.049 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhc-CChHHHHHHHHHhccccc
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED-DDAVNAEAFINKASFLVS 168 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~-~d~~~A~~~l~ka~~~~~ 168 (397)
.....+|.+|...|++++|.+.+.....-. +.....+.+...+.++... +++.+|..+++++.....
T Consensus 41 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 41 KYWLMKGKALYNLERYEEAVDCYNYVINVI-----EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-----CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 455789999999999999999998855321 1112456888999999999 999999999999876543
No 169
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=86.10 E-value=2.7 Score=33.42 Aligned_cols=74 Identities=12% Similarity=-0.022 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.+...+|.+|...|++++|...+..... . ++ .-.+.+.....+|...+++..|...++++...-.. +++.+
T Consensus 48 ~~~~~~~~~~~~~~~~~~A~~~~~~al~-~-----~p-~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~--~~~a~ 118 (126)
T 4gco_A 48 ILYSNRAACLTKLMEFQRALDDCDTCIR-L-----DS-KFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPS--NEEAR 118 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-H-----CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHH
T ss_pred HHHHHHhhHHHhhccHHHHHHHHHHHHH-h-----hh-hhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcC--CHHHH
Confidence 4567789999999999999998887432 1 11 12467888999999999999999999999876443 55544
Q ss_pred HHH
Q 015984 177 LQY 179 (397)
Q Consensus 177 ~~~ 179 (397)
..+
T Consensus 119 ~~l 121 (126)
T 4gco_A 119 EGV 121 (126)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 170
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=86.04 E-value=3.4 Score=39.90 Aligned_cols=103 Identities=11% Similarity=-0.017 Sum_probs=62.8
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHH-hhcCChHHHHHHHHHhcccccCcchHHH---
Q 015984 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLY-LEDDDAVNAEAFINKASFLVSSSQQEVL--- 175 (397)
Q Consensus 100 ~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~-L~~~d~~~A~~~l~ka~~~~~~~~~~~l--- 175 (397)
..+|.+|...|++++|...++...- ...++..+..++.....++ ...+++.+|..++.++........+..-
T Consensus 338 ~~lg~~~~~~~~~~~A~~~~~kaL~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~ 413 (472)
T 4g1t_A 338 SILASLHALADQYEEAEYYFQKEFS----KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKD 413 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH----SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred hhHHHHHHHhccHHHHHHHHHHHHh----cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHH
Confidence 4689999999999999999987532 1234555656666655554 3678999999999998655433211100
Q ss_pred ---------------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 176 ---------------NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 176 ---------------~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
....+...|.+|...++|.+|-.+|..+++.
T Consensus 414 ~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 414 KLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 0124566899999999999999999888875
No 171
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=86.02 E-value=4.2 Score=32.18 Aligned_cols=69 Identities=10% Similarity=0.109 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhch-hccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhccc
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGID-LDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 166 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~-~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~ 166 (397)
.....+|.+|...|+|++|.+.+.... +.. ....+.......+......+...+++..|..++.++...
T Consensus 43 ~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 43 TFYNNKAAVYFEEKKFAECVQFCEKAVEVGR-ETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455678999999999999998877643 221 112233446778889999999999999999999998653
No 172
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=85.87 E-value=5.2 Score=36.55 Aligned_cols=98 Identities=13% Similarity=-0.027 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
......||.+|...|++++|...+..+.... . +. . ...+.....+...++...|...+.++...-.. +++
T Consensus 151 ~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~---p-~~-~--~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~--~~~- 220 (287)
T 3qou_A 151 GEIGLLLAETLIALNRSEDAEAVLXTIPLQD---Q-DT-R--YQGLVAQIELLXQAADTPEIQQLQQQVAENPE--DAA- 220 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG---C-SH-H--HHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTT--CHH-
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHhCchhh---c-ch-H--HHHHHHHHHHHhhcccCccHHHHHHHHhcCCc--cHH-
Confidence 3667889999999999999999999976432 1 11 1 22233333344566677777778777665433 333
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.+...|..+...++|.+|...|.++...
T Consensus 221 ---~~~~la~~l~~~g~~~~A~~~l~~~l~~ 248 (287)
T 3qou_A 221 ---LATQLALQLHQVGRNEEALELLFGHLRX 248 (287)
T ss_dssp ---HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3445688889999999999999999986
No 173
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=85.77 E-value=3.6 Score=36.58 Aligned_cols=92 Identities=15% Similarity=0.115 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhh----cCChHHHHHHHHHhcccccCcch
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLVSSSQQ 172 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~----~~d~~~A~~~l~ka~~~~~~~~~ 172 (397)
.....||.+|...|++++|...+....- . + + .+.+.....+|.. .+|+.+|..+++++...- +
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~-~--~---~---~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~ 73 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD-L--K---E---NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----Y 73 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH-T--T---C---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----C
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH-C--C---C---HHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----C
Confidence 4456789999999999999988887442 1 1 1 2456777888888 999999999999986652 2
Q ss_pred HHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHH
Q 015984 173 EVLNLQYKVCYARILDL----KRKFLEAALRYYDISQ 205 (397)
Q Consensus 173 ~~l~~~~~~~~~~~~~~----~r~f~~Aa~~y~e~~~ 205 (397)
+ ......|.++.. .++|.+|-.+|..+..
T Consensus 74 ~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 106 (273)
T 1ouv_A 74 S----NGCHLLGNLYYSGQGVSQNTNKALQYYSKACD 106 (273)
T ss_dssp H----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHhCCCCcccCHHHHHHHHHHHHH
Confidence 2 234456777788 8899998888887776
No 174
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=85.69 E-value=3.7 Score=30.39 Aligned_cols=65 Identities=9% Similarity=-0.039 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 136 kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+.+....+.++..+++..|..+++++...... ++ ..+...|..+...++|.+|...|..+...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH--NH----VLYSNRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--cH----HHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 4677889999999999999999999998765432 22 35666788889999999999999988875
No 175
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=85.61 E-value=1 Score=34.69 Aligned_cols=41 Identities=12% Similarity=0.081 Sum_probs=35.7
Q ss_pred HHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEE
Q 015984 310 SASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (397)
Q Consensus 310 ~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gk 350 (397)
.+.+-...+++++||+.|++|+.-+...|.++...|.+.=.
T Consensus 9 ~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 9 DMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 33344689999999999999999999999999999988654
No 176
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=85.35 E-value=7.8 Score=28.31 Aligned_cols=61 Identities=8% Similarity=0.006 Sum_probs=49.5
Q ss_pred HHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 141 VQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 141 L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
+..++.++..+++.+|...++++...... ++. ..+...|..+...++|.+|...|..+...
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~--~~~---~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPV--GKD---EAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSS--THH---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 56678889999999999999998765433 322 25667888999999999999999999886
No 177
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=85.11 E-value=3.1 Score=33.34 Aligned_cols=65 Identities=9% Similarity=0.014 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 136 kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
-.+.+......++..+++..|..+++++...-.. ++ .++...|..+...++|.+|...|..+...
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 81 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY--DA----RYFLGLGACRQSLGLYEQALQSYSYGALM 81 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc--cH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4677788899999999999999999998765432 33 35567889999999999999999999885
No 178
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=85.09 E-value=2.3 Score=31.94 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=53.3
Q ss_pred chhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 132 DDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 132 ~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
++......+....+.+...+++..|..++.++...... ++ ......|.++...++|.+|...|..+...
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 72 (125)
T 1na0_A 4 DPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN--NA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (125)
T ss_dssp ---CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC--cH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 34445678888999999999999999999998765332 22 24556788889999999999999888874
No 179
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=84.92 E-value=2.1 Score=32.39 Aligned_cols=44 Identities=9% Similarity=0.182 Sum_probs=36.3
Q ss_pred HHHHHHhhcc---ccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEE
Q 015984 307 NLLSASKLYT---NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (397)
Q Consensus 307 Nl~~is~~Y~---~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gk 350 (397)
.|+.+-+-.. .+|..+||+.||+|...|...|.+|-.+|.|.-.
T Consensus 14 ~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 14 RILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec
Confidence 3434444445 8999999999999999999999999999999644
No 180
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=84.68 E-value=3.1 Score=34.01 Aligned_cols=66 Identities=9% Similarity=-0.015 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 135 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 135 ~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.-.+.+......++..+++..|...++++...-.. ++ .++...|..+...++|.+|...|..+...
T Consensus 19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY--DS----RFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc--cH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 34677888899999999999999999998765432 33 24456788999999999999999999885
No 181
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=84.39 E-value=4.3 Score=39.07 Aligned_cols=96 Identities=9% Similarity=-0.021 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCc
Q 015984 91 FEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS 170 (397)
Q Consensus 91 ~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~ 170 (397)
.......+...+|..|...|+|++|...+.....- ++ .....+......|...+++.+|..+++++......
T Consensus 268 ~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~- 339 (370)
T 1ihg_A 268 LQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI------DP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE- 339 (370)
T ss_dssp GHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT------CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh------Cc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Confidence 44455678889999999999999999998885521 11 23567888899999999999999999999876543
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 015984 171 QQEVLNLQYKVCYARILDLKRKFLEAALR 199 (397)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~ 199 (397)
++.. +...+.++...+++.+|.+.
T Consensus 340 -~~~~----~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 340 -DKAI----QAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp -CHHH----HHHHHHHHHHHHHHHHHHHC
T ss_pred -CHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 4433 33345555666666665543
No 182
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=84.34 E-value=5.1 Score=32.27 Aligned_cols=37 Identities=11% Similarity=0.201 Sum_probs=33.5
Q ss_pred cCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccC
Q 015984 318 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV 354 (397)
Q Consensus 318 Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv 354 (397)
+|..+||+.+|++..-|-..+.+|...|-+.-.-+..
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~ 79 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNL 79 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCcc
Confidence 9999999999999999999999999999997765443
No 183
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=83.90 E-value=3.1 Score=34.44 Aligned_cols=67 Identities=10% Similarity=0.145 Sum_probs=48.4
Q ss_pred HHHHHhchhhhhhCCCchhhHHHHHHHHHHHHHHh--hccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 279 AFAEELKPHQKALLPDNFTVLDRAMIEHNLLSASK--LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 279 ~F~~~L~~h~~~~~~d~~~~L~~~v~EhNl~~is~--~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
.|++.|++|.... .+..++.+.. .-..++..+||+.+++++.-+=..+.+|...|-+.=.-|..++
T Consensus 23 ~~~~~l~~~gLt~------------~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~Dr 90 (147)
T 4b8x_A 23 EVDAVVKPYGLTF------------ARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDG 90 (147)
T ss_dssp HHHHHHGGGTCCH------------HHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---
T ss_pred HHHHHHHHcCCCH------------HHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcC
Confidence 5677777775421 2344443332 2345999999999999999999999999999999999998887
Q ss_pred E
Q 015984 357 V 357 (397)
Q Consensus 357 i 357 (397)
-
T Consensus 91 R 91 (147)
T 4b8x_A 91 R 91 (147)
T ss_dssp -
T ss_pred c
Confidence 3
No 184
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=83.87 E-value=7.3 Score=29.52 Aligned_cols=39 Identities=10% Similarity=0.121 Sum_probs=35.6
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEecc
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 353 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQ 353 (397)
...++..+||+.+|++..-+-..+.+|...|-+...-|.
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec
Confidence 467999999999999999999999999999999877664
No 185
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=83.44 E-value=6.4 Score=29.92 Aligned_cols=64 Identities=14% Similarity=-0.072 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccc
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~ 167 (397)
.+...+|.+|...|++++|.+.+.....-. . .-...+.....++...+++..|..+++++....
T Consensus 51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~-----~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 51 KLYSNRAACYTKLLEFQLALKDCEECIQLE--P-----TFIKGYTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHHHHHTTTTCHHHHHHHHHHHHHHC--T-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--C-----CchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 566789999999999999999998854321 1 124578888999999999999999999987654
No 186
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=83.31 E-value=7.5 Score=35.59 Aligned_cols=99 Identities=12% Similarity=-0.014 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.+...+|.+++..|++++|.+++..... . ++..--.+|+.-+.++...+++..|...+.++...... .+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~A~~~~~~al~-~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~--~~~-- 169 (308)
T 2ond_A 100 LLYFAYADYEESRMKYEKVHSIYNRLLA-I-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHH-- 169 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHT-S-----SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC--CTH--
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh-c-----cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--CHH--
Confidence 4667899999999999999999988552 1 11111127888888899999999999999998765332 222
Q ss_pred HHHHHHHHHHHHH-HHhHHHHHHHHHHHHHhh
Q 015984 177 LQYKVCYARILDL-KRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 177 ~~~~~~~~~~~~~-~r~f~~Aa~~y~e~~~~~ 207 (397)
.+...|.+... .+++.+|...|-.+...+
T Consensus 170 --~~~~~a~~~~~~~~~~~~A~~~~~~al~~~ 199 (308)
T 2ond_A 170 --VYVTAALMEYYCSKDKSVAFKIFELGLKKY 199 (308)
T ss_dssp --HHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 22223333222 588999999998888764
No 187
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.06 E-value=4.8 Score=31.39 Aligned_cols=69 Identities=10% Similarity=-0.154 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 135 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 135 ~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
...+.+....+.+...+++..|..+++++..... +.......+...|..+...++|.+|...|..+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 94 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDA---TPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK 94 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcc---cchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 4678899999999999999999999999876533 33344667778889999999999999999988875
No 188
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=82.41 E-value=4.3 Score=30.93 Aligned_cols=65 Identities=9% Similarity=-0.047 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 137 le~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
...+.....+|...+++..|..++.++...... ++ ..+...|.++...++|.+|...|..+....
T Consensus 19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT--YS----VAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC--cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 357888899999999999999999998765432 22 245667999999999999999998888753
No 189
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=81.98 E-value=3.1 Score=41.55 Aligned_cols=95 Identities=9% Similarity=-0.123 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
+.....+|..|...|+|++|.+.+.....- ++ .-...+.....+|...+++.+|..+++++...... +++.
T Consensus 40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p-~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~--~~~~ 110 (477)
T 1wao_1 40 AIYYGNRSLAYLRTECYGYALGDATRAIEL------DK-KYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH--DKDA 110 (477)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------CT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CTTH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CHHH
Confidence 466788999999999999999998875421 11 12457788899999999999999999998776433 2222
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYY 201 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~ 201 (397)
.+....+..+...++|.+|...|.
T Consensus 111 --~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 111 --KMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp --HHHHHHHHHHHHHHHHCCC-----
T ss_pred --HHHHHHHHHHHHHHHHHHHhcccc
Confidence 222233334777899999998887
No 190
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.11 E-value=4.8 Score=37.54 Aligned_cols=200 Identities=13% Similarity=0.102 Sum_probs=95.5
Q ss_pred hhcCChHHHHHHHHHhcccccC---------cc----hHHHHH--HHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhcC
Q 015984 148 LEDDDAVNAEAFINKASFLVSS---------SQ----QEVLNL--QYKVCYARILDLKRKFLEAALRYYDISQIQKRQIG 212 (397)
Q Consensus 148 L~~~d~~~A~~~l~ka~~~~~~---------~~----~~~l~~--~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~~~~~ 212 (397)
...+|+..+...+.+++..... .+ ..++.+ ..++.+|++....+|+.+=-+|+..+-..+.. .
T Consensus 15 ~~~~d~~~~~~lL~~lK~~L~~~~~l~p~~~~~~~~~~~el~~ar~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d--~ 92 (274)
T 4b4t_T 15 FENGDYAACEKLLPPIKIELIKNNLLIPDLSIQNDIYLNDLMITKRILEVGALASIQTFNFDSFENYFNQLKPYYFS--N 92 (274)
T ss_dssp ----------------------------------------------CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTT--T
T ss_pred HhccCHHHHHHHHHHHHHHHHhccCcCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--h
Confidence 3455666666666665432211 01 122333 57888999999999998766666665554321 0
Q ss_pred CCCC-CHHHHHHHHHHHHHHHHhcCCCCcchHHHHhhhhc-hhhccccchH---HHHHHHHHhhcChhhHHHHHHHhchh
Q 015984 213 DETI-DEEALEQALSAAVTCTILAAAGPQRSRVLATLYKD-ERCSKLKIYP---ILQKVYLERILRKPEIDAFAEELKPH 287 (397)
Q Consensus 213 ~~~~-~~~~~~~~L~~av~~~ILa~~~~~rs~ll~~l~~d-~~~~~l~~~~---~L~k~f~~~ii~~~~l~~F~~~L~~h 287 (397)
.... ..+.+...+.+-+++.+..+-..+-+..|..+-.. +...+-|..+ .|.+++++ +.-.+|-+.++..
T Consensus 93 ~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~e-----GnY~kff~l~~~~ 167 (274)
T 4b4t_T 93 NHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLME-----GSYQKAWDLLQSG 167 (274)
T ss_dssp SSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHH-----TCSHHHHHHHHTC
T ss_pred hccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHc-----CCHHHHHHHHhcC
Confidence 1111 12345667777788877766556666666655321 1222222222 23333333 4333443322211
Q ss_pred hh--hhCCCchhhHHHHHHHHHHHHHHhhccccCHHHHHHHhCC-ChHHHHHHHHHhHhcCceEEEeccCCcEEEECC
Q 015984 288 QK--ALLPDNFTVLDRAMIEHNLLSASKLYTNISFEELGTLLGI-APQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 362 (397)
Q Consensus 288 ~~--~~~~d~~~~L~~~v~EhNl~~is~~Y~~Isl~~La~ll~l-s~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~ 362 (397)
.. ....--...|-.+++..-+..+.+.|.+|+++.++++|++ +.+++...+.+ .-. .+ .+|.|+|..
T Consensus 168 ~~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~----~gW--~~--~~~~v~F~~ 237 (274)
T 4b4t_T 168 SQNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALE----RNW--PI--VNSKVYFNN 237 (274)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHH----TTC--CC--CSSCCCC--
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHH----cCC--EE--eCCEeEECC
Confidence 00 0000001467788888889999999999999999999999 45666655543 211 22 256666764
No 191
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=80.88 E-value=3.8 Score=35.41 Aligned_cols=70 Identities=14% Similarity=0.018 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcc---hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQ---QEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 137 le~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~---~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
+-.++++++-.++.+.|..|+...+.+.......+ .|..+.+...+.|..+-.+|+|..|...|..+...
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 44578999999999999999999999766554322 47889999999999999999999999999998774
No 192
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=80.82 E-value=4.2 Score=30.16 Aligned_cols=64 Identities=8% Similarity=-0.144 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 137 le~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.+.+......+...+++.+|...+.++...... ++ ..+...|..+...++|.+|-..|..+...
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~--~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ--NP----VGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 467788899999999999999999998776433 32 34567888999999999999999998875
No 193
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=80.27 E-value=11 Score=31.21 Aligned_cols=101 Identities=16% Similarity=0.076 Sum_probs=65.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHh-hcCChHHHHHHHHHhcccccCc
Q 015984 92 EEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYL-EDDDAVNAEAFINKASFLVSSS 170 (397)
Q Consensus 92 e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L-~~~d~~~A~~~l~ka~~~~~~~ 170 (397)
..........||.+|...|++++|...+..+.... . +.. +......+.+ ...+...|...++++......
T Consensus 36 ~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p-~~~----~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~- 106 (176)
T 2r5s_A 36 LQSRGDVKLAKADCLLETKQFELAQELLATIPLEY---Q-DNS----YKSLIAKLELHQQAAESPELKRLEQELAANPD- 106 (176)
T ss_dssp HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---C-CHH----HHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTT-
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---C-ChH----HHHHHHHHHHHhhcccchHHHHHHHHHHhCCC-
Confidence 33445777889999999999999999999865332 2 221 1111222222 222233466777776654322
Q ss_pred chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 171 QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 171 ~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
++ ..+...|..+...++|.+|-..|..+...
T Consensus 107 -~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 137 (176)
T 2r5s_A 107 -NF----ELACELAVQYNQVGRDEEALELLWNILKV 137 (176)
T ss_dssp -CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -CH----HHHHHHHHHHHHcccHHHHHHHHHHHHHh
Confidence 33 24455788899999999999999998875
No 194
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=79.89 E-value=27 Score=34.22 Aligned_cols=129 Identities=10% Similarity=0.098 Sum_probs=85.4
Q ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHH
Q 015984 57 LLQTFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFR 136 (397)
Q Consensus 57 ~~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~k 136 (397)
++..+...+..+|..-.-++...+++.+..-.-+.+.|..-+...+ +|.. -| +.. =.|
T Consensus 41 ~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~--------~~a~---------~~---~r~--flr 98 (394)
T 3txn_A 41 LIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCI--------EWAK---------QE---KRT--FLR 98 (394)
T ss_dssp HHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHH--------HHHH---------HT---TCH--HHH
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH--------HHHH---------HH---HHH--HHH
Confidence 3333333445566555566667777777555555555522221111 2221 11 110 013
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhh
Q 015984 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 137 le~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
..+-.+.+.+|++.++|.+|...+++........+|....+..+.+.+++|...+|+..+-..|..+..+.
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 33445789999999999999999999887766666788999999999999999999999988888876654
No 195
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=79.06 E-value=3.7 Score=31.95 Aligned_cols=66 Identities=9% Similarity=-0.130 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 135 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 135 ~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
...+.+......++..+++..|..+++++...... + ..++...|.++...++|.+|...|..+...
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 72 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--V----AVYYTNRALCYLKMQQPEQALADCRRALEL 72 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC--c----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34678899999999999999999999998776433 2 236677889999999999999999988875
No 196
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=79.01 E-value=15 Score=29.21 Aligned_cols=43 Identities=9% Similarity=0.005 Sum_probs=38.7
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcE
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~gi 357 (397)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++-
T Consensus 48 ~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R 90 (142)
T 2fbi_A 48 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQR 90 (142)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCC
Confidence 4579999999999999999999999999999999888776664
No 197
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=78.98 E-value=14 Score=29.31 Aligned_cols=43 Identities=12% Similarity=0.137 Sum_probs=39.0
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcE
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~gi 357 (397)
...++..+||+.+|+++.-+-..+.+|...|-+.-..|..++-
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R 88 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKR 88 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSS
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCc
Confidence 4578999999999999999999999999999999888877763
No 198
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=78.83 E-value=3.9 Score=31.41 Aligned_cols=69 Identities=9% Similarity=0.148 Sum_probs=54.3
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHHHhcccccCcch-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 138 SKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQ-EVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 138 e~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~-~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
+-|+.+.+.++..+|+.+|...+.+|.......+. ..-+...+...|..+...++|..|-.+|.++...
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 56889999999999999999999999776532211 1123455577788889999999999999999875
No 199
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=78.76 E-value=9 Score=33.89 Aligned_cols=93 Identities=20% Similarity=0.198 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHh----hhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhh----cCChHHHHHHHHHhccccc
Q 015984 97 IIREKLADLYES----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLVS 168 (397)
Q Consensus 97 ~l~~~La~~~e~----~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~----~~d~~~A~~~l~ka~~~~~ 168 (397)
.....|+.+|.. .|++++|.+.+.... +. + -.+.+.....+|.. .+|+.+|..+++++...-
T Consensus 39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~-~~-----~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~- 108 (273)
T 1ouv_A 39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKAC-DL-----N---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK- 108 (273)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT-----T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH-HC-----C---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC-
Confidence 345679999999 999999999988743 21 1 24567778888998 999999999999987651
Q ss_pred CcchHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHh
Q 015984 169 SSQQEVLNLQYKVCYARILDL----KRKFLEAALRYYDISQI 206 (397)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~----~r~f~~Aa~~y~e~~~~ 206 (397)
++ .-....|.++.. .++|.+|..+|..+...
T Consensus 109 ---~~----~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 109 ---YA----EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp ---CH----HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred ---Cc----cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence 22 234456777787 89999999999888873
No 200
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=78.65 E-value=14 Score=27.95 Aligned_cols=60 Identities=10% Similarity=0.040 Sum_probs=44.4
Q ss_pred ccccCHHHH----HHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECC-cchHHHHHHHHH
Q 015984 315 YTNISFEEL----GTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED-DTEELQQWDQQI 374 (397)
Q Consensus 315 Y~~Isl~~L----a~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~-~~~~l~~w~~~I 374 (397)
...++..+| |+.+|++..-+-..+.+|...|-+.-.-|.....+.... +.+.+..|...+
T Consensus 20 ~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~~~~~~~~~~~ 84 (99)
T 1tbx_A 20 NEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGKLFAISLKTAI 84 (99)
T ss_dssp CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHHHHHHHHHHHH
Confidence 467899999 889999999999999999999999888887444455543 233444444333
No 201
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=78.64 E-value=16 Score=28.84 Aligned_cols=44 Identities=14% Similarity=0.103 Sum_probs=39.6
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcE
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~gi 357 (397)
....++..+||+.+|+++.-+-..+.+|...|-+.-.-|..++-
T Consensus 40 ~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R 83 (138)
T 3bpv_A 40 REPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRR 83 (138)
T ss_dssp HSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCce
Confidence 34789999999999999999999999999999999888877664
No 202
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=78.44 E-value=19 Score=28.46 Aligned_cols=43 Identities=14% Similarity=0.157 Sum_probs=38.6
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcE
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~gi 357 (397)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++-
T Consensus 50 ~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R 92 (140)
T 2nnn_A 50 TGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGR 92 (140)
T ss_dssp HSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCC
Confidence 3589999999999999999999999999999999887776663
No 203
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=78.24 E-value=10 Score=36.65 Aligned_cols=99 Identities=7% Similarity=-0.104 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCC-hHHHHHHHHHhcccccCcchH
Q 015984 95 VLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDD-AVNAEAFINKASFLVSSSQQE 173 (397)
Q Consensus 95 ~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d-~~~A~~~l~ka~~~~~~~~~~ 173 (397)
.......++.+|...|++++|...+.....-. + .-.+.|.....++...++ +..|...++++...-.+ +.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~------P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~--~~ 166 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELN------A-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK--NY 166 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT--CH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC------c-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC--CH
Confidence 34555666667777777777777666643211 1 113455555666666664 77777777776554332 11
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 174 ~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+|-..|..+...
T Consensus 167 ----~a~~~~g~~~~~~g~~~eAl~~~~kal~l 195 (382)
T 2h6f_A 167 ----QVWHHRRVLVEWLRDPSQELEFIADILNQ 195 (382)
T ss_dssp ----HHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 23344555666666677766666666654
No 204
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=77.01 E-value=4.8 Score=30.01 Aligned_cols=34 Identities=3% Similarity=0.051 Sum_probs=31.3
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g 349 (397)
-.+|+.+||+.||+|+.-|...|..+-..|.|.=
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 4599999999999999999999999999999854
No 205
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=76.97 E-value=20 Score=28.63 Aligned_cols=43 Identities=19% Similarity=0.210 Sum_probs=38.9
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcE
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~gi 357 (397)
...++..+||+.+|+++.-+-..+.+|...|-+.-.-|..++-
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r 87 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRR 87 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCc
Confidence 4679999999999999999999999999999999888776663
No 206
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=76.52 E-value=20 Score=29.55 Aligned_cols=51 Identities=24% Similarity=0.219 Sum_probs=42.9
Q ss_pred HHHHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 306 HNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 306 hNl~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
..++.+..-...++..+||+.+|+++.-+=..+.+|...|-|.-.-|..++
T Consensus 49 ~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 99 (162)
T 3k0l_A 49 FTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHG 99 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcC
Confidence 344444334568999999999999999999999999999999999887777
No 207
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=75.97 E-value=3.4 Score=39.04 Aligned_cols=97 Identities=9% Similarity=-0.001 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.+...+|..|...|+|.+|...+....-- ++ .-...+....+.|...+++..|...++++...-.. ++...
T Consensus 231 ~~~~nla~~~~~~g~~~~A~~~~~~al~~------~p-~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~--~~~a~ 301 (338)
T 2if4_A 231 PCHLNIAACLIKLKRYDEAIGHCNIVLTE------EE-KNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD--DKAIR 301 (338)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHH------CT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CHHHH
Confidence 46788999999999999999998875422 11 22467888999999999999999999999766432 33332
Q ss_pred HHHHHHHHHH-HHHHHhHHHHHHHHHHHHHh
Q 015984 177 LQYKVCYARI-LDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 177 ~~~~~~~~~~-~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.. .+.+ ....+.+..+...|..++..
T Consensus 302 ~~----L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 302 RE----LRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------------------
T ss_pred HH----HHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 22 2233 23444555555666666653
No 208
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=75.88 E-value=26 Score=27.84 Aligned_cols=50 Identities=10% Similarity=0.086 Sum_probs=41.8
Q ss_pred hhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc---EEEECC
Q 015984 313 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 362 (397)
Q Consensus 313 ~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g---iV~f~~ 362 (397)
.....++..+||+.+|+++.-+-..+.+|...|-+.-.-|..++ .+....
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~ 100 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTP 100 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECT
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECH
Confidence 34678999999999999999999999999999999888776555 344443
No 209
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=75.01 E-value=22 Score=27.70 Aligned_cols=42 Identities=14% Similarity=-0.037 Sum_probs=38.5
Q ss_pred cccCHHHHHHHh-CCChHHHHHHHHHhHhcCceEEEeccCCcE
Q 015984 316 TNISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357 (397)
Q Consensus 316 ~~Isl~~La~ll-~ls~~~~E~~ls~mI~~grl~gkIDQv~gi 357 (397)
..+++.+||+.+ |++..-+-..+.+|...|-|...-|..++-
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r 76 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPP 76 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSC
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 568999999999 999999999999999999999998877663
No 210
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=74.38 E-value=23 Score=28.29 Aligned_cols=49 Identities=8% Similarity=-0.032 Sum_probs=41.2
Q ss_pred HHHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 307 NLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 307 Nl~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
.++.+.. ...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 41 ~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 89 (146)
T 2gxg_A 41 LVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDR 89 (146)
T ss_dssp HHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCC
Confidence 3333334 788999999999999999999999999999999888776555
No 211
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=74.36 E-value=19 Score=28.95 Aligned_cols=49 Identities=4% Similarity=0.091 Sum_probs=40.9
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc---EEEECC
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 362 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g---iV~f~~ 362 (397)
-...++..+||+.+|+++.-+-..+.+|...|-+.-.-|..++ .|....
T Consensus 42 ~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~ 93 (145)
T 3g3z_A 42 TEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTE 93 (145)
T ss_dssp HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECH
T ss_pred HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeECh
Confidence 3456999999999999999999999999999999987776665 355543
No 212
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=74.11 E-value=58 Score=32.53 Aligned_cols=171 Identities=12% Similarity=-0.004 Sum_probs=110.2
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHhCCC---C---hHHHHHHHHHHHHhhccccchHHH
Q 015984 20 QYKHILSSVISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELGRL---E---PETQKEIANYTLAQIQPRVVSFEE 93 (397)
Q Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~~l~~l---~---~~~~~~~~~~~l~~~~~~~~~~e~ 93 (397)
.|+..|+.+...++++.-..+++.+....+.. +......++...... . .....+-+..+.+.+....+.-.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~p--d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd- 104 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQL--SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPN- 104 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCC-
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC--CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCC-
Confidence 47888888888899887777888887665422 333344455554321 1 11223333344443322211100
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchH
Q 015984 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQE 173 (397)
Q Consensus 94 q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~ 173 (397)
......|...|.+.|++++|.+++.++... +..+ -+..|-..+.-|...+++..|..++......-.. +|.
T Consensus 105 --~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~---g~~P---d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~-Pd~ 175 (501)
T 4g26_A 105 --EATFTNGARLAVAKDDPEMAFDMVKQMKAF---GIQP---RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVV-PEE 175 (501)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---TCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCC-CCH
T ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCC---ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CCH
Confidence 122356788899999999999999998743 2212 2456788889999999999999999886543221 222
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 174 VLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 174 ~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.-|......+...+++.+|...|.+.-..
T Consensus 176 ----~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 176 ----PELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp ----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 24566777888999999999999887664
No 213
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=74.01 E-value=7.6 Score=32.16 Aligned_cols=65 Identities=18% Similarity=0.160 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 136 RLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 136 kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
-.+.+......+...+++..|..+++++...-.. ++ .++...|..+...++|.+|-.+|..+...
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~--~~----~~~~~lg~~~~~~g~~~~Ai~~~~~al~l 99 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY--NV----DYIMGLAAIYQIKEQFQQAADLYAVAFAL 99 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--CH----HHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence 4667888899999999999999999998776433 33 26677889999999999999999999886
No 214
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=73.96 E-value=23 Score=28.19 Aligned_cols=42 Identities=14% Similarity=0.151 Sum_probs=38.0
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
...++..+||+.+|+++.-+-..+.+|...|-+.-.-|..++
T Consensus 41 ~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~ 82 (144)
T 1lj9_A 41 NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNK 82 (144)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCC
Confidence 357899999999999999999999999999999988876655
No 215
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=73.91 E-value=25 Score=27.91 Aligned_cols=41 Identities=5% Similarity=0.114 Sum_probs=36.5
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
..++..+||+.+|+++.-+-..+.+|...|-|.-.-|..++
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~ 86 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDT 86 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCC
Confidence 38999999999999999999999999999999988877766
No 216
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=73.47 E-value=17 Score=29.06 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=38.3
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc---EEEECC
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 362 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g---iV~f~~ 362 (397)
...++..+||+.+|+++.-+-..+.+|...|-|.-.-|..++ .|...+
T Consensus 49 ~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 99 (143)
T 3oop_A 49 NEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTD 99 (143)
T ss_dssp HSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECH
T ss_pred cCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECH
Confidence 478999999999999999999999999999999888866655 344443
No 217
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=73.05 E-value=14 Score=27.98 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=35.0
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCC
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVE 355 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~ 355 (397)
-..++..+||+.+|++..-+-..+..|...|-+...-+..+
T Consensus 34 ~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 34 EKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp CSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 46799999999999999999999999999999987766544
No 218
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=72.95 E-value=30 Score=27.71 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=36.9
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcE
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~gi 357 (397)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++-
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R 96 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRR 96 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcc
Confidence 4679999999999999999999999999999998887766653
No 219
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=72.77 E-value=22 Score=28.79 Aligned_cols=43 Identities=9% Similarity=0.195 Sum_probs=38.4
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
....++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 48 ~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 48 KHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCC
Confidence 3567999999999999999999999999999999888776555
No 220
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=72.62 E-value=14 Score=29.58 Aligned_cols=44 Identities=7% Similarity=0.069 Sum_probs=30.7
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcE
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~gi 357 (397)
-...++..+||+.+|+++.-+=..+.+|...|-|.-.-|..++-
T Consensus 48 ~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR 91 (142)
T 3ech_A 48 EQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQR 91 (142)
T ss_dssp HTTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--------
T ss_pred hCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCC
Confidence 34579999999999999999999999999999999888877764
No 221
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=72.37 E-value=7.6 Score=31.34 Aligned_cols=51 Identities=18% Similarity=0.193 Sum_probs=36.5
Q ss_pred HHHHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcE
Q 015984 306 HNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357 (397)
Q Consensus 306 hNl~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~gi 357 (397)
..++.+..... ++..+||+.+|+++.-+-..+.+|...|-+.-.-|..++-
T Consensus 41 ~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R 91 (146)
T 3tgn_A 41 EHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDAR 91 (146)
T ss_dssp HHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--------
T ss_pred HHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCc
Confidence 33444444456 9999999999999999999999999999999888766663
No 222
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=71.73 E-value=9.3 Score=31.38 Aligned_cols=42 Identities=19% Similarity=0.292 Sum_probs=36.5
Q ss_pred hhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE---EeccC
Q 015984 313 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG---SIDQV 354 (397)
Q Consensus 313 ~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g---kIDQv 354 (397)
+-..++++.+||+.+|+|+..+-..+.+|...|.|.+ .+|+.
T Consensus 15 ~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 15 KKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 3457899999999999999999999999999999965 46654
No 223
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=71.69 E-value=6.6 Score=30.74 Aligned_cols=64 Identities=8% Similarity=-0.109 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 137 le~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.+.++.....++..+++..|...+.++...-.. ++ ..+...|.++...++|.+|-..|..+...
T Consensus 17 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~--~~----~a~~~lg~~~~~~g~~~~A~~~~~~al~l 80 (121)
T 1hxi_A 17 HENPMEEGLSMLKLANLAEAALAFEAVCQKEPE--RE----EAWRSLGLTQAENEKDGLAIIALNHARML 80 (121)
T ss_dssp CSCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT--CH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--CH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345678889999999999999999998776433 22 24556888999999999999999988885
No 224
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=71.66 E-value=21 Score=28.72 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=41.4
Q ss_pred HHHHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 306 HNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 306 hNl~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
..++.+......++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~ 93 (152)
T 3bj6_A 43 RAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHA 93 (152)
T ss_dssp HHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSST
T ss_pred HHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccc
Confidence 333333334568999999999999999999999999999999888776555
No 225
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=71.38 E-value=17 Score=28.81 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=38.0
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
...++..+||+.+|+++.-+-..+.+|...|-+.-.-|..++
T Consensus 45 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 86 (139)
T 3bja_A 45 SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ 86 (139)
T ss_dssp SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT
T ss_pred cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCC
Confidence 567999999999999999999999999999999887776665
No 226
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=71.32 E-value=14 Score=29.46 Aligned_cols=41 Identities=10% Similarity=0.095 Sum_probs=37.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
..++..+||+.+|+++.-+=..+.+|...|-+.-.-|..++
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 92 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDE 92 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSS
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 57999999999999999999999999999999887777666
No 227
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.99 E-value=29 Score=27.67 Aligned_cols=42 Identities=7% Similarity=0.034 Sum_probs=35.0
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~ 89 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDG 89 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCC
Confidence 568999999999999999999999999999999888776555
No 228
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=70.58 E-value=15 Score=36.49 Aligned_cols=100 Identities=12% Similarity=-0.000 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 96 LIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 96 ~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
..+...++.+++..|++++|..++....- . ++..-..+|+.-++++...+++..|..++.++...... .+.
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~-~-----~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~--~~~- 391 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLA-I-----EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART--RHH- 391 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH-S-----SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC--CTH-
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhC-c-----cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC--chH-
Confidence 46778899999999999999999988542 1 11111247888888888899999999999998765322 111
Q ss_pred HHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHhh
Q 015984 176 NLQYKVCYARI-LDLKRKFLEAALRYYDISQIQ 207 (397)
Q Consensus 176 ~~~~~~~~~~~-~~~~r~f~~Aa~~y~e~~~~~ 207 (397)
.+...|.+ +...+++.+|...|-.+....
T Consensus 392 ---~~~~~a~~~~~~~~~~~~A~~~~e~al~~~ 421 (530)
T 2ooe_A 392 ---VYVTAALMEYYCSKDKSVAFKIFELGLKKY 421 (530)
T ss_dssp ---HHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHcCChhHHHHHHHHHHHHC
Confidence 12222322 234788999999998888754
No 229
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=70.57 E-value=23 Score=28.80 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=38.3
Q ss_pred HHHHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 306 HNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 306 hNl~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
..++.+..-...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 46 ~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~ 96 (155)
T 3cdh_A 46 WRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDK 96 (155)
T ss_dssp HHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC-----
T ss_pred HHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcC
Confidence 334444344567999999999999999999999999999999877665554
No 230
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=70.37 E-value=34 Score=26.15 Aligned_cols=47 Identities=6% Similarity=-0.055 Sum_probs=37.5
Q ss_pred cCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCcchHH
Q 015984 318 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEEL 367 (397)
Q Consensus 318 Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~~~~l 367 (397)
++..+||..+|+++..+...+..+...|-|.-. .+|+...+.+.+.+
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~---~~~~~LT~kG~~~l 67 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE---GKQYMLTKKGEELL 67 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE---TTEEEECHHHHHHH
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE---CCeeEEChhHHHHH
Confidence 999999999999999999999999999999765 33444444444333
No 231
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=69.94 E-value=10 Score=31.82 Aligned_cols=42 Identities=10% Similarity=0.090 Sum_probs=35.9
Q ss_pred hhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE---EeccC
Q 015984 313 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG---SIDQV 354 (397)
Q Consensus 313 ~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g---kIDQv 354 (397)
+-..++++.+||+.+|+|+..+-..+.+|...|.|.+ .+|..
T Consensus 20 ~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 20 QENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 3346799999999999999999999999999999865 55543
No 232
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=69.91 E-value=10 Score=36.64 Aligned_cols=97 Identities=8% Similarity=-0.099 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhhhc-HHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHH
Q 015984 97 IIREKLADLYESEQQ-WSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVL 175 (397)
Q Consensus 97 ~l~~~La~~~e~~~d-~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l 175 (397)
.....++.+|...|+ +++|...+.....-. + .-...|.....++...+++..|...++++...-.. +.
T Consensus 132 ~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~------P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~--~~-- 200 (382)
T 2h6f_A 132 TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ------P-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK--NY-- 200 (382)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC------T-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT--CH--
T ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHHC------C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc--CH--
Confidence 555778999999996 999999998865321 1 12457777888888999999999999999776433 22
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 176 NLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 176 ~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+|-.+|..+...
T Consensus 201 --~a~~~lg~~~~~~g~~~eAl~~~~~al~l 229 (382)
T 2h6f_A 201 --HAWQHRQWVIQEFKLWDNELQYVDQLLKE 229 (382)
T ss_dssp --HHHHHHHHHHHHHTCCTTHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 23456788888899999999999999885
No 233
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=69.84 E-value=25 Score=28.72 Aligned_cols=42 Identities=17% Similarity=0.186 Sum_probs=36.7
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
...++..+||+.+|+++.-+-..+.+|...|-|.-.-|..++
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 103 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDR 103 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCC
Confidence 477999999999999999999999999999999988877766
No 234
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=69.76 E-value=9.4 Score=31.58 Aligned_cols=42 Identities=14% Similarity=0.279 Sum_probs=36.8
Q ss_pred hhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE---EeccC
Q 015984 313 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG---SIDQV 354 (397)
Q Consensus 313 ~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g---kIDQv 354 (397)
+-..++++.+||+.+|+|+..+-..+.+|...|.|.+ .+|..
T Consensus 18 ~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 18 MGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 3347899999999999999999999999999999865 57765
No 235
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=69.69 E-value=19 Score=28.91 Aligned_cols=50 Identities=8% Similarity=0.175 Sum_probs=36.5
Q ss_pred HHHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 307 NLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 307 Nl~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
.++.+......++..+||+.+|+++.-+-..+.+|...|-+.-.-|..++
T Consensus 44 ~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (148)
T 3nrv_A 44 RIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
T ss_dssp HHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred HHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCc
Confidence 33333334568999999999999999999999999999999877766555
No 236
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=69.57 E-value=30 Score=28.28 Aligned_cols=42 Identities=10% Similarity=0.191 Sum_probs=36.3
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 64 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 105 (162)
T 3cjn_A 64 KDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQ 105 (162)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CC
T ss_pred CCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCC
Confidence 467999999999999999999999999999999887765554
No 237
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=69.55 E-value=12 Score=26.62 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=31.5
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g 349 (397)
..++..+||+.+|+|...+.+.+..|..+|.|..
T Consensus 24 ~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 24 GPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp SCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 4599999999999999999999999999999754
No 238
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=69.54 E-value=5.4 Score=41.68 Aligned_cols=96 Identities=14% Similarity=-0.029 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHH
Q 015984 97 IIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLN 176 (397)
Q Consensus 97 ~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~ 176 (397)
.....+|..|...|++++|...+....... ..-.+.+.....+|+..+++.+|...++++...... ++
T Consensus 434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~--~~--- 501 (681)
T 2pzi_A 434 ELPLMEVRALLDLGDVAKATRKLDDLAERV-------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG--EL--- 501 (681)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT--CS---
T ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHHhccC-------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--Ch---
Confidence 566788999999999999999998855322 112467888889999999999999999998776543 22
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 177 LQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 177 ~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
..+...|.++...++|.+ ...|..+...
T Consensus 502 -~~~~~lg~~~~~~g~~~~-~~~~~~al~~ 529 (681)
T 2pzi_A 502 -APKLALAATAELAGNTDE-HKFYQTVWST 529 (681)
T ss_dssp -HHHHHHHHHHHHHTCCCT-TCHHHHHHHH
T ss_pred -HHHHHHHHHHHHcCChHH-HHHHHHHHHh
Confidence 234567778888899988 8888887775
No 239
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=69.10 E-value=40 Score=26.82 Aligned_cols=42 Identities=10% Similarity=0.005 Sum_probs=38.0
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcE
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~gi 357 (397)
... +..+||+.+|+++.-+=..+.+|...|-+.-.-|..++-
T Consensus 49 ~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R 90 (144)
T 3f3x_A 49 EPR-SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRR 90 (144)
T ss_dssp SCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCC-CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCc
Confidence 344 999999999999999999999999999999988887773
No 240
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=69.05 E-value=15 Score=26.84 Aligned_cols=35 Identities=11% Similarity=0.014 Sum_probs=32.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gk 350 (397)
..++..+||+.+|+|..-+-..+..|...|.+...
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~~ 47 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQRS 47 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe
Confidence 56999999999999999999999999999999753
No 241
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=68.63 E-value=37 Score=25.97 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=33.9
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEec
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkID 352 (397)
..++..+||+.+|+++.-+-..+.+|...|.+...-+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 4589999999999999999999999999999987655
No 242
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=68.40 E-value=18 Score=28.93 Aligned_cols=51 Identities=10% Similarity=0.111 Sum_probs=38.9
Q ss_pred HHHHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 306 HNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 306 hNl~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
..++.+..-...++..+||+.+|+++.-+-..+.+|...|-+.-.-|..++
T Consensus 39 ~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~ 89 (140)
T 3hsr_A 39 YIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDE 89 (140)
T ss_dssp HHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCc
Confidence 344433333578999999999999999999999999999999988877766
No 243
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=68.07 E-value=25 Score=28.65 Aligned_cols=42 Identities=12% Similarity=0.165 Sum_probs=33.3
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
...++..+||+.+|++..-+-..+.+|...|-|.-.-|..++
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~ 102 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDR 102 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCC
Confidence 568999999999999999999999999999999877665555
No 244
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=67.33 E-value=49 Score=29.87 Aligned_cols=84 Identities=7% Similarity=-0.024 Sum_probs=60.8
Q ss_pred HHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHH
Q 015984 112 WSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKR 191 (397)
Q Consensus 112 ~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r 191 (397)
+++|..++..-.. .+++ .-..+|+.-+.++...+++.+|...++++...... +++. .+...|.++...+
T Consensus 80 ~~~A~~~~~rAl~-----~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~--~~~~---~~~~~~~~~~~~~ 148 (308)
T 2ond_A 80 SDEAANIYERAIS-----TLLK-KNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI--DPTL---VYIQYMKFARRAE 148 (308)
T ss_dssp HHHHHHHHHHHHT-----TTTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS--CTHH---HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH-----HhCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc--CccH---HHHHHHHHHHHhc
Confidence 4788887776331 1111 22467888899999999999999999998875433 2321 4555677888899
Q ss_pred hHHHHHHHHHHHHHh
Q 015984 192 KFLEAALRYYDISQI 206 (397)
Q Consensus 192 ~f~~Aa~~y~e~~~~ 206 (397)
++.+|-..|..+...
T Consensus 149 ~~~~A~~~~~~a~~~ 163 (308)
T 2ond_A 149 GIKSGRMIFKKARED 163 (308)
T ss_dssp CHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhc
Confidence 999999999888874
No 245
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=67.22 E-value=44 Score=27.03 Aligned_cols=42 Identities=10% Similarity=0.226 Sum_probs=37.7
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 56 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 97 (154)
T 2eth_A 56 FGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDR 97 (154)
T ss_dssp HCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTS
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 357999999999999999999999999999999888766655
No 246
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=67.17 E-value=32 Score=28.50 Aligned_cols=42 Identities=19% Similarity=0.337 Sum_probs=38.5
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
...++..+||+.+|++..-+=..+.+|...|-|.-.-|..++
T Consensus 57 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 457999999999999999999999999999999988887666
No 247
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=66.97 E-value=12 Score=30.91 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=35.6
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE---EeccC
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG---SIDQV 354 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g---kIDQv 354 (397)
--.++++.+||+.+|+|+..+-..+.+|...|.|.+ .+|..
T Consensus 20 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 20 ENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 347899999999999999999999999999999864 35643
No 248
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=66.71 E-value=32 Score=27.12 Aligned_cols=40 Identities=13% Similarity=0.210 Sum_probs=36.9
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 317 ~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
.++..+||+.+|+++.-+-..+.+|...|-+.-.-|..++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~ 89 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDS 89 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCC
Confidence 6999999999999999999999999999999887776665
No 249
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=66.49 E-value=59 Score=27.64 Aligned_cols=98 Identities=12% Similarity=0.075 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHh----hhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhh----cCChHHHHHHHHHhccccc
Q 015984 97 IIREKLADLYES----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLVS 168 (397)
Q Consensus 97 ~l~~~La~~~e~----~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~----~~d~~~A~~~l~ka~~~~~ 168 (397)
.-...|+.+|.. .+|+.+|.+.+...- +. + +...-.+.+.....+|.. .+|+.+|..+++++... .
T Consensus 86 ~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~-~~--~--~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~ 159 (212)
T 3rjv_A 86 SGEIVLARVLVNRQAGATDVAHAITLLQDAA-RD--S--ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-S 159 (212)
T ss_dssp HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHT-SS--T--TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHcCCCCccCHHHHHHHHHHHH-Hc--C--CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-C
Confidence 445789999988 889999999988743 21 1 111235667777888888 88999999999998765 1
Q ss_pred CcchHHHHHHHHHHHHHHHHH------HHhHHHHHHHHHHHHHh
Q 015984 169 SSQQEVLNLQYKVCYARILDL------KRKFLEAALRYYDISQI 206 (397)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~------~r~f~~Aa~~y~e~~~~ 206 (397)
. ++. . ....|.+|.. .+|+.+|..+|..+...
T Consensus 160 ~--~~~--a--~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 160 R--TGY--A--EYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp C--TTH--H--HHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred C--CHH--H--HHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 1 222 1 2234555543 23899988888887774
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=66.48 E-value=22 Score=30.55 Aligned_cols=95 Identities=9% Similarity=0.019 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCch----------------
Q 015984 71 ETQKEIANYTLAQIQP-RVVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDD---------------- 133 (397)
Q Consensus 71 ~~~~~~~~~~l~~~~~-~~~~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~---------------- 133 (397)
+..+-++..++..... +...--.+.+++-..+|+.++.+|+|..|...+....--. +.+..
T Consensus 37 ~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~--k~l~k~~s~~~~~~~~ss~p~ 114 (167)
T 3ffl_A 37 SNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK--KALSKTSKVRPSTGNSASTPQ 114 (167)
T ss_dssp HHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HCC------------------
T ss_pred HHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH--HHHhcCCCccccccccCCCcc
Confidence 3344455554444321 2121233446777899999999999999999998842111 11110
Q ss_pred ----hHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccc
Q 015984 134 ----TFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (397)
Q Consensus 134 ----~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~ 167 (397)
..=.|+-.++++.|.+.+++..|-..+..+-...
T Consensus 115 s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~ 152 (167)
T 3ffl_A 115 SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ 152 (167)
T ss_dssp --CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG
T ss_pred cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh
Confidence 0124677789999999999999988887765443
No 251
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=66.39 E-value=14 Score=30.41 Aligned_cols=41 Identities=15% Similarity=0.174 Sum_probs=35.5
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhHhcCceE---EEeccC
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR---GSIDQV 354 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~---gkIDQv 354 (397)
-...+++.+||+.+|+|+..+-..+.+|...|.|. +.+|+.
T Consensus 18 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 18 ADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 34689999999999999999999999999999985 445654
No 252
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=65.94 E-value=19 Score=28.67 Aligned_cols=42 Identities=14% Similarity=0.197 Sum_probs=37.9
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
...++..+||+.+|+++.-+-..+.+|...|-+.-.-|..++
T Consensus 49 ~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 90 (142)
T 2bv6_A 49 ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQ 90 (142)
T ss_dssp SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSST
T ss_pred cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCc
Confidence 457999999999999999999999999999999888876555
No 253
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=65.73 E-value=13 Score=31.59 Aligned_cols=41 Identities=7% Similarity=0.029 Sum_probs=35.8
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE---EeccC
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG---SIDQV 354 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g---kIDQv 354 (397)
--.++++.+||+.+|+|+..+-..+.+|...|.|.+ .+|..
T Consensus 28 ~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 28 KDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 346899999999999999999999999999999964 55654
No 254
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=65.68 E-value=17 Score=28.90 Aligned_cols=42 Identities=7% Similarity=-0.088 Sum_probs=38.0
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
...++..+||+.+|+++.-+-..+.+|...|-+.-.-|..++
T Consensus 43 ~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 43 DAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 467999999999999999999999999999999888876555
No 255
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=64.67 E-value=23 Score=28.67 Aligned_cols=48 Identities=15% Similarity=0.077 Sum_probs=39.1
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE--EeccCCc---EEEECC
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG--SIDQVEA---VIHFED 362 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g--kIDQv~g---iV~f~~ 362 (397)
...++..+||+.+|+++.-+-..+.+|...|-+.- .-|..++ .+....
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~ 105 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSK 105 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECH
Confidence 46799999999999999999999999999999988 6666665 455443
No 256
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=64.23 E-value=43 Score=28.56 Aligned_cols=96 Identities=16% Similarity=0.122 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHhhh----cHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhh----cCChHHHHHHHHHhccccc
Q 015984 97 IIREKLADLYESEQ----QWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLVS 168 (397)
Q Consensus 97 ~l~~~La~~~e~~~----d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~----~~d~~~A~~~l~ka~~~~~ 168 (397)
.-...|+.+|.. + |+.+|.+.+... .+. + -.+.+.....+|.. .+|+.+|..++.++...-.
T Consensus 51 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A-~~~--g------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 120 (212)
T 3rjv_A 51 DALALLAQLKIR-NPQQADYPQARQLAEKA-VEA--G------SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSE 120 (212)
T ss_dssp HHHHHHHHHTTS-STTSCCHHHHHHHHHHH-HHT--T------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTT
T ss_pred HHHHHHHHHHHc-CCCCCCHHHHHHHHHHH-HHC--C------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCC
Confidence 344678888887 6 888888888774 232 1 12345666777777 8899999999999876533
Q ss_pred CcchHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHHh
Q 015984 169 SSQQEVLNLQYKVCYARILDL----KRKFLEAALRYYDISQI 206 (397)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~----~r~f~~Aa~~y~e~~~~ 206 (397)
....+. -....|.+|.. .+|+.+|..+|..+...
T Consensus 121 ~~~~~~----a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~ 158 (212)
T 3rjv_A 121 SDAAVD----AQMLLGLIYASGVHGPEDDVKASEYFKGSSSL 158 (212)
T ss_dssp SHHHHH----HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT
T ss_pred CcchHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc
Confidence 101122 22345666666 77888888888887763
No 257
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=63.37 E-value=30 Score=28.36 Aligned_cols=48 Identities=15% Similarity=0.261 Sum_probs=38.8
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc---EEEECC
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 362 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g---iV~f~~ 362 (397)
...++..+||+.+|++..-+=..+.+|...|-|.-.-|..++ .|....
T Consensus 65 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~ 115 (161)
T 3e6m_A 65 YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTR 115 (161)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECH
Confidence 468999999999999999999999999999999888776665 355443
No 258
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=63.28 E-value=45 Score=26.43 Aligned_cols=41 Identities=10% Similarity=0.001 Sum_probs=38.0
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
..++..+||+.+|+|..-+=..+.+|...|-+.-.-|..++
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 67999999999999999999999999999999998877665
No 259
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=61.77 E-value=64 Score=27.34 Aligned_cols=42 Identities=5% Similarity=0.113 Sum_probs=39.3
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
...++..+||+.+|+++.-+=..+.+|...|-|.-.-|..++
T Consensus 55 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 96 (189)
T 3nqo_A 55 EEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDK 96 (189)
T ss_dssp GGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 468999999999999999999999999999999999988877
No 260
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=61.11 E-value=1.3e+02 Score=29.52 Aligned_cols=71 Identities=13% Similarity=0.081 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015984 135 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (397)
Q Consensus 135 ~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~ 205 (397)
++..+....+++|.+.||+..|-.++.....-.....+...++.|+....|++...+||..|-..+..+..
T Consensus 135 erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~ 205 (445)
T 4b4t_P 135 ERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILK 205 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 46777788899999999999999999997655444457788999999999999999999999888877654
No 261
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=60.91 E-value=28 Score=26.01 Aligned_cols=32 Identities=16% Similarity=0.234 Sum_probs=30.9
Q ss_pred ccCHHHHHHHhCCChHH-HHHHHHHhHhcCceE
Q 015984 317 NISFEELGTLLGIAPQK-AEKIASRMIFEDRMR 348 (397)
Q Consensus 317 ~Isl~~La~ll~ls~~~-~E~~ls~mI~~grl~ 348 (397)
.+++.+||+.+|+++.- +=..+.+|...|-+.
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 69999999999999999 999999999999998
No 262
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=60.15 E-value=1.2e+02 Score=28.89 Aligned_cols=77 Identities=13% Similarity=0.148 Sum_probs=52.6
Q ss_pred HHHHHHhcCCcchhhhHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhhcc-ccchHHHHHHHHHHHHHHHHHhhhcHHHH
Q 015984 39 KFIDHMLSDDVPLVVSRQLLQTFAQELGRLEP--ETQKEIANYTLAQIQP-RVVSFEEQVLIIREKLADLYESEQQWSKA 115 (397)
Q Consensus 39 ~~~~~~~~~~~~~~~sr~~~~~~~~~l~~l~~--~~~~~~~~~~l~~~~~-~~~~~e~q~~~l~~~La~~~e~~~d~~~A 115 (397)
-+|+.+....++ ++-..+..+++.+..+|+ ..++.+...++.|-.. +...+-.- .|-..+|..|.+++++.+|
T Consensus 80 llvevy~~~~~~--~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp--~LH~~ig~~~~~e~~~~~A 155 (336)
T 3lpz_A 80 LLVDTFRQAGQR--VDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDP--ELHHVVGTLYVEEGEFEAA 155 (336)
T ss_dssp HHHHHHHHHTCC--CCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCC--CCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHccCCHHHH
Confidence 334444433443 234566777777887774 3589999999999864 22233333 6668899999999999999
Q ss_pred HHHH
Q 015984 116 AQML 119 (397)
Q Consensus 116 a~~L 119 (397)
..-+
T Consensus 156 e~H~ 159 (336)
T 3lpz_A 156 EKHL 159 (336)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8776
No 263
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=59.96 E-value=49 Score=24.38 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=34.3
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEecc
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 353 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQ 353 (397)
..++..+||+.+|+|..-+-..+.+|...|.+...-|.
T Consensus 37 ~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~ 74 (99)
T 3cuo_A 37 PGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDA 74 (99)
T ss_dssp CSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECS
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 46899999999999999999999999999999876553
No 264
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=59.90 E-value=25 Score=26.40 Aligned_cols=45 Identities=7% Similarity=0.088 Sum_probs=36.3
Q ss_pred cCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECC
Q 015984 318 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 362 (397)
Q Consensus 318 Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~ 362 (397)
++..+||+.+|++..-+=..+.+|...|-+...-|+-...|....
T Consensus 31 ~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~ 75 (95)
T 2qvo_A 31 VYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTD 75 (95)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEECh
Confidence 999999999999999999999999999999444444333455543
No 265
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=59.75 E-value=21 Score=28.57 Aligned_cols=44 Identities=7% Similarity=0.058 Sum_probs=34.5
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIH 359 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~ 359 (397)
..++.++||+.+|+|+..+.+.+..+...|-+...=....|+.-
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L 68 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVL 68 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEE
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEe
Confidence 56899999999999999999999999999998764322334443
No 266
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=58.98 E-value=13 Score=31.35 Aligned_cols=45 Identities=13% Similarity=0.218 Sum_probs=37.4
Q ss_pred HHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceE---EEeccC
Q 015984 310 SASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR---GSIDQV 354 (397)
Q Consensus 310 ~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~---gkIDQv 354 (397)
.+-+--.++++.+||+.+|+|+..+-..+.+|...|.|. +.+|..
T Consensus 10 ~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 10 RILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 333445789999999999999999999999999999876 556653
No 267
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=58.80 E-value=34 Score=26.37 Aligned_cols=42 Identities=10% Similarity=0.042 Sum_probs=38.8
Q ss_pred ccccCHHHHHHHh-CCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll-~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
...+++.+|++.+ |+++.-+=..+.+|...|-|..+.|..++
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~ 67 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVP 67 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 4679999999999 99999999999999999999999987766
No 268
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=58.76 E-value=70 Score=25.74 Aligned_cols=42 Identities=10% Similarity=0.084 Sum_probs=38.3
Q ss_pred ccccCHHHHHHHh-CCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll-~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
....++.+|++.+ |+++.-+=..|.+|...|-|.-+.|..++
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~ 88 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVP 88 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSS
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCC
Confidence 3568999999999 79999999999999999999999887766
No 269
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=58.73 E-value=36 Score=25.48 Aligned_cols=37 Identities=11% Similarity=0.100 Sum_probs=34.0
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEec
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkID 352 (397)
..+++.+||+.+|+|..-+-..+..|...|.+...-+
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~ 71 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKE 71 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 5789999999999999999999999999999987644
No 270
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=58.61 E-value=31 Score=27.88 Aligned_cols=43 Identities=2% Similarity=0.118 Sum_probs=34.0
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE--EeccCCc
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG--SIDQVEA 356 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g--kIDQv~g 356 (397)
....++..+||+.+|+++.-+=..+.+|...|-+.- ..|..++
T Consensus 48 ~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~ 92 (151)
T 3kp7_A 48 SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQ 92 (151)
T ss_dssp HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC---------
T ss_pred HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCC
Confidence 458899999999999999999999999999999986 3466666
No 271
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=58.56 E-value=81 Score=26.43 Aligned_cols=67 Identities=7% Similarity=-0.095 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHhhh---cHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhccccc
Q 015984 97 IIREKLADLYESEQ---QWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (397)
Q Consensus 97 ~l~~~La~~~e~~~---d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~ 168 (397)
..+..+|-.+...+ +++++..+|.++-... ++..+-|.+...+--|...+||.+|..+++++-..-.
T Consensus 33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 44466666666655 8889999999866432 2445667777777777888899999998888877654
No 272
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=58.52 E-value=13 Score=31.72 Aligned_cols=43 Identities=12% Similarity=0.159 Sum_probs=36.5
Q ss_pred HHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE---Eecc
Q 015984 311 ASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG---SIDQ 353 (397)
Q Consensus 311 is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g---kIDQ 353 (397)
+-+-..++++.+||+.+|+|+..+-..+.+|...|.|.+ .+|.
T Consensus 35 ~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~ 80 (171)
T 2e1c_A 35 ILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDP 80 (171)
T ss_dssp HHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCG
T ss_pred HHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECH
Confidence 334457899999999999999999999999999999865 4565
No 273
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=58.08 E-value=71 Score=25.63 Aligned_cols=87 Identities=13% Similarity=0.022 Sum_probs=60.3
Q ss_pred HhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHH
Q 015984 107 ESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARI 186 (397)
Q Consensus 107 e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~ 186 (397)
...|++++|...+....... . .-.+.+....++|...+++..|..++.++...... ++ ..+...|.+
T Consensus 21 ~~~~~~~~A~~~~~~al~~~---p----~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~--~~----~~~~~la~~ 87 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN---P----QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE--NA----ELYAALATV 87 (177)
T ss_dssp C-----CCCCHHHHHHHHHC---C----SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS--CH----HHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHhC---C----CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CH----HHHHHHHHH
Confidence 45677888877777643221 1 12368888999999999999999999998776543 22 244556666
Q ss_pred -HHHHHhH--HHHHHHHHHHHHh
Q 015984 187 -LDLKRKF--LEAALRYYDISQI 206 (397)
Q Consensus 187 -~~~~r~f--~~Aa~~y~e~~~~ 206 (397)
+...++| .+|...|..+...
T Consensus 88 l~~~~~~~~~~~A~~~~~~al~~ 110 (177)
T 2e2e_A 88 LYYQASQHMTAQTRAMIDKALAL 110 (177)
T ss_dssp HHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHhcCCcchHHHHHHHHHHHHh
Confidence 7788998 9999999888875
No 274
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=57.66 E-value=13 Score=30.79 Aligned_cols=40 Identities=13% Similarity=0.182 Sum_probs=35.0
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE---Eecc
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG---SIDQ 353 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g---kIDQ 353 (397)
-..++++.+||+.+|+|+..+-..+.+|...|.|.+ .+|.
T Consensus 18 ~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 60 (151)
T 2cyy_A 18 NDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDP 60 (151)
T ss_dssp HCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCG
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECH
Confidence 346899999999999999999999999999998854 4554
No 275
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=57.47 E-value=54 Score=27.14 Aligned_cols=48 Identities=10% Similarity=0.090 Sum_probs=36.6
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc---EEEECC
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 362 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g---iV~f~~ 362 (397)
...++..+||+.+|++..-+=..+.+|...|-|.-.-|..++ .|....
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~ 116 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTE 116 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECG
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECH
Confidence 456999999999999999999999999999999888766655 455443
No 276
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=55.76 E-value=23 Score=34.20 Aligned_cols=85 Identities=11% Similarity=0.058 Sum_probs=62.4
Q ss_pred cchHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccc
Q 015984 88 VVSFEEQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (397)
Q Consensus 88 ~~~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~ 167 (397)
...+++.+......+++.+.+.|++.+|...+..+...- .+ .+ +.+-..|+.+...|+...|...+.++....
T Consensus 163 r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~---P~--~E--~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 163 ATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH---PY--RE--PLWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---TT--CH--HHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CC--CH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 345666767777788999999999999998888864321 11 22 478888999999999999999999987765
Q ss_pred cC----cchHHHHHHH
Q 015984 168 SS----SQQEVLNLQY 179 (397)
Q Consensus 168 ~~----~~~~~l~~~~ 179 (397)
.. .+.++++.-|
T Consensus 236 ~~eLG~~P~~~l~~l~ 251 (388)
T 2ff4_A 236 ADDLGIDPGPTLRALN 251 (388)
T ss_dssp HHHHSCCCCHHHHHHH
T ss_pred HHHhCCCCCHHHHHHH
Confidence 43 2456665444
No 277
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=55.32 E-value=70 Score=26.97 Aligned_cols=74 Identities=15% Similarity=-0.025 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCc------chHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Q 015984 135 FRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSS------QQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQIQK 208 (397)
Q Consensus 135 ~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~------~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~~~ 208 (397)
...+.++.....++..+++..|...++|+....... .........+.-.|..+...++|.+|-.+|..+...|.
T Consensus 9 ~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n 88 (159)
T 2hr2_A 9 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 88 (159)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 456777888889999999999999999987766541 11112344777788889999999999999988888644
No 278
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=54.74 E-value=23 Score=28.58 Aligned_cols=42 Identities=12% Similarity=0.142 Sum_probs=27.5
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~gi 357 (397)
..++..+||+.+|+++.-+=..+.+|...|-+.-.-|..++-
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR 97 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNAR 97 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC-------
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCch
Confidence 679999999999999999999999999999998877776664
No 279
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=54.28 E-value=16 Score=29.91 Aligned_cols=42 Identities=12% Similarity=0.217 Sum_probs=36.2
Q ss_pred hhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE---EeccC
Q 015984 313 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG---SIDQV 354 (397)
Q Consensus 313 ~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g---kIDQv 354 (397)
+--.++++.+||+.+|+|+..+-..+.+|...|.|.+ .+|..
T Consensus 13 ~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 13 QYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp TTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 3345799999999999999999999999999999876 56653
No 280
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=54.03 E-value=50 Score=26.46 Aligned_cols=42 Identities=7% Similarity=0.201 Sum_probs=32.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~gi 357 (397)
..++..+||+.+++++.-+=..+.+|...|-|.-.-|..++-
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R 94 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRR 94 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--------
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccc
Confidence 368999999999999999999999999999998887777663
No 281
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=54.02 E-value=59 Score=25.01 Aligned_cols=37 Identities=11% Similarity=0.070 Sum_probs=33.9
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEec
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkID 352 (397)
..+++.+||+.+|+++.-+-..+..|...|.+...-|
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 5689999999999999999999999999999987654
No 282
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=53.97 E-value=79 Score=24.92 Aligned_cols=69 Identities=10% Similarity=0.025 Sum_probs=45.1
Q ss_pred CCChHHHHHHHHHhHhcCceEEEecc-CCc--EEEEC--C-cchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q 015984 328 GIAPQKAEKIASRMIFEDRMRGSIDQ-VEA--VIHFE--D-DTEELQQWDQQIVGLCQALNDILDSMAKKGLPIP 396 (397)
Q Consensus 328 ~ls~~~~E~~ls~mI~~grl~gkIDQ-v~g--iV~f~--~-~~~~l~~w~~~I~~l~~~v~~v~~~i~~~~~~~~ 396 (397)
++++.-+-..|.+|-.+|-|...-+. .+| -..|. . ..+.+..|......+...++.+...-.....|.|
T Consensus 41 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~~~~~~~i~~il~~~~~~~~~~~ 115 (117)
T 4esf_A 41 EVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKKWDFVSSKINVLKSSNSRWSHPQF 115 (117)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHHcccccCcCCcc
Confidence 78999999999999999999988753 222 23332 2 3577888888888888888877765555544544
No 283
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=53.81 E-value=17 Score=29.34 Aligned_cols=36 Identities=19% Similarity=0.262 Sum_probs=32.9
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEE
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gk 350 (397)
-.++++.+||+.+|+|+.-+-+.+.+|...|.+.+.
T Consensus 16 ~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 16 DARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp CTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 467899999999999999999999999999998654
No 284
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=53.21 E-value=61 Score=26.61 Aligned_cols=42 Identities=5% Similarity=-0.034 Sum_probs=36.1
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~gi 357 (397)
..++..+||+.+|++..-+=..+.+|...|-|.-.-|..++-
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 102 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRR 102 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCC
Confidence 489999999999999999999999999999999998888773
No 285
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=53.09 E-value=21 Score=28.96 Aligned_cols=43 Identities=12% Similarity=0.091 Sum_probs=35.3
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
....++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 58 ~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 100 (153)
T 2pex_A 58 ETDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDE 100 (153)
T ss_dssp HSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-----
T ss_pred hCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccC
Confidence 3567999999999999999999999999999999887766555
No 286
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=52.86 E-value=70 Score=26.16 Aligned_cols=42 Identities=14% Similarity=0.084 Sum_probs=38.6
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
....++.+|++.+|++..-+=..+.+|...|-|....|..++
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 467899999999999999999999999999999999987665
No 287
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=52.82 E-value=35 Score=27.53 Aligned_cols=56 Identities=11% Similarity=0.166 Sum_probs=39.3
Q ss_pred HHHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc---EEEECC
Q 015984 307 NLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA---VIHFED 362 (397)
Q Consensus 307 Nl~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g---iV~f~~ 362 (397)
.++.+..-...++..+||+.+|+++.-+=..+.+|...|-|.-.-|..++ .|....
T Consensus 45 ~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 103 (149)
T 4hbl_A 45 LVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTD 103 (149)
T ss_dssp HHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECS
T ss_pred HHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECH
Confidence 33333333578999999999999999999999999999999887776665 355544
No 288
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=52.23 E-value=1.5e+02 Score=27.74 Aligned_cols=78 Identities=8% Similarity=0.073 Sum_probs=54.3
Q ss_pred HHHHHHhcCCcchhhhHHHHHHHHHHhCCCCh--HHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHHHHHhhhcHHHH
Q 015984 39 KFIDHMLSDDVPLVVSRQLLQTFAQELGRLEP--ETQKEIANYTLAQIQPR-VVSFEEQVLIIREKLADLYESEQQWSKA 115 (397)
Q Consensus 39 ~~~~~~~~~~~~~~~sr~~~~~~~~~l~~l~~--~~~~~~~~~~l~~~~~~-~~~~e~q~~~l~~~La~~~e~~~d~~~A 115 (397)
-+|+.+....+++ +...+..+++.++.+|+ ..++.+...++.|.... ...+-.- .|-..+|..|.++|++.+|
T Consensus 78 llvev~~~~~~~~--~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp--~LH~~~a~~~~~e~~~~~A 153 (312)
T 2wpv_A 78 YLLEVYDLAEVKV--DDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDP--YLHNTIGSKLLEGDFVYEA 153 (312)
T ss_dssp HHHHHHHHTTCCC--SHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCH--HHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHcCCCC--CHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHhhcCCHHHH
Confidence 3455444444433 56677778888877763 35899999999998532 2233333 6778899999999999998
Q ss_pred HHHHh
Q 015984 116 AQMLS 120 (397)
Q Consensus 116 a~~L~ 120 (397)
..-+.
T Consensus 154 ~~H~i 158 (312)
T 2wpv_A 154 ERYFM 158 (312)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87654
No 289
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=52.09 E-value=27 Score=28.68 Aligned_cols=47 Identities=15% Similarity=0.056 Sum_probs=37.5
Q ss_pred HHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEE
Q 015984 311 ASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIH 359 (397)
Q Consensus 311 is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~ 359 (397)
+.+.+.. +.++||+.+++|+..+++++.++...|-+...=. ..|+.-
T Consensus 18 La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~L 64 (145)
T 1xd7_A 18 ISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASL 64 (145)
T ss_dssp HHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEE
T ss_pred HHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCcee
Confidence 3433445 9999999999999999999999999999987654 444433
No 290
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=50.93 E-value=28 Score=29.42 Aligned_cols=46 Identities=7% Similarity=0.014 Sum_probs=38.0
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEEC
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE 361 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~ 361 (397)
..++.++||+.+|+|+..+++++.++...|-+..+=-...|+.--.
T Consensus 43 ~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar 88 (159)
T 3lwf_A 43 GPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNG 88 (159)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECS
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecC
Confidence 3599999999999999999999999999999987744444554333
No 291
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=50.70 E-value=38 Score=30.49 Aligned_cols=64 Identities=9% Similarity=-0.113 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 137 LSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 137 le~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
.+.+......+...+++..|..+++++...... + ..++...|..+...++|.+|...|..+...
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~--~----~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 67 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL--V----AVYYTNRALCYLKMQQPEQALADCRRALEL 67 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC--C----HHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc--c----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356677888999999999999999998776433 2 346677889999999999999999888874
No 292
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=50.36 E-value=77 Score=30.70 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHh----hhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhh----cCChHHHHHHHHHhccccc
Q 015984 97 IIREKLADLYES----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLVS 168 (397)
Q Consensus 97 ~l~~~La~~~e~----~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~----~~d~~~A~~~l~ka~~~~~ 168 (397)
.-...|+.+|.. .+|+++|.+.+...- +. + -.+.+.....+|.. .+|+.+|..++.++...
T Consensus 76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~--~------~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-- 144 (490)
T 2xm6_A 76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAA-LK--G------LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ-- 144 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HC--C------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--
Confidence 344555666665 566666666555532 11 1 11334445555655 56666666666665443
Q ss_pred CcchHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHH
Q 015984 169 SSQQEVLNLQYKVCYARILDL----KRKFLEAALRYYDISQ 205 (397)
Q Consensus 169 ~~~~~~l~~~~~~~~~~~~~~----~r~f~~Aa~~y~e~~~ 205 (397)
++++ -....|.+|.. .+++.+|...|..+..
T Consensus 145 --~~~~----a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~ 179 (490)
T 2xm6_A 145 --GRDS----GQQSMGDAYFEGDGVTRDYVMAREWYSKAAE 179 (490)
T ss_dssp --TCHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred --CCHH----HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 1221 12334455554 5666666666666655
No 293
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=49.81 E-value=41 Score=27.27 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=34.3
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
....++..+||+.+|++..-+-..+.+|...|-|.-.-|..++
T Consensus 59 ~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~ 101 (160)
T 3boq_A 59 NPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDR 101 (160)
T ss_dssp CTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC------
T ss_pred cCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCC
Confidence 3467999999999999999999999999999999887666555
No 294
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=49.80 E-value=1.3e+02 Score=26.95 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=41.2
Q ss_pred hhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECC
Q 015984 313 KLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 362 (397)
Q Consensus 313 ~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~ 362 (397)
-.....|.++||+.+|+|+..|+..+.+|...|-+. + ..+|.|..+.
T Consensus 174 l~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~-~--~~~~~~~~~~ 220 (232)
T 2qlz_A 174 LLNGRATVEELSDRLNLKEREVREKISEMARFVPVK-I--INDNTVVLDE 220 (232)
T ss_dssp HHSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE-E--ETTTEEEECH
T ss_pred HhcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE-E--ecCCeEEecH
Confidence 347899999999999999999999999999999987 3 3678888875
No 295
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=49.76 E-value=82 Score=24.00 Aligned_cols=42 Identities=12% Similarity=0.030 Sum_probs=37.8
Q ss_pred ccccCHHHHHHHh-CCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll-~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
...+++.+|++.+ |+++.-+-..+.+|...|-|..+.|..++
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~ 78 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVP 78 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCC
Confidence 3568999999999 59999999999999999999998887665
No 296
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=49.39 E-value=23 Score=29.21 Aligned_cols=44 Identities=9% Similarity=0.023 Sum_probs=36.3
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIH 359 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~ 359 (397)
..++.++||+.+|+|+..+++++.++...|-+..+=-...|+.-
T Consensus 27 ~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~L 70 (143)
T 3t8r_A 27 GCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQL 70 (143)
T ss_dssp CCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeee
Confidence 35999999999999999999999999999998875333344443
No 297
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=49.26 E-value=1.2e+02 Score=29.73 Aligned_cols=99 Identities=8% Similarity=-0.016 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHh-------hhcHH-------HHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHH
Q 015984 97 IIREKLADLYES-------EQQWS-------KAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINK 162 (397)
Q Consensus 97 ~l~~~La~~~e~-------~~d~~-------~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~k 162 (397)
.+-..+|.++.. .|+++ +|..++....-. ..+ .-..+++.-+.++...+++.+|...+.+
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~-----~~p-~~~~l~~~~~~~~~~~g~~~~A~~~~~~ 346 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST-----LLK-KNMLLYFAYADYEESRMKYEKVHSIYNR 346 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT-----TCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH-----hCc-ccHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 455667888775 68876 788887764310 111 2356888888999999999999999999
Q ss_pred hcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 163 ASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 163 a~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
+...... ++. ..+...|.++...+++.+|-..|..+...
T Consensus 347 al~~~p~--~~~---~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 347 LLAIEDI--DPT---LVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHSSSS--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HhCcccc--Cch---HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8775332 221 25566677778889999999888888764
No 298
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=49.22 E-value=17 Score=27.12 Aligned_cols=35 Identities=11% Similarity=0.354 Sum_probs=30.9
Q ss_pred hccccCHHHHHHHh-CCChHHHHHHHHHhHhcCceE
Q 015984 314 LYTNISFEELGTLL-GIAPQKAEKIASRMIFEDRMR 348 (397)
Q Consensus 314 ~Y~~Isl~~La~ll-~ls~~~~E~~ls~mI~~grl~ 348 (397)
.=+...|..+++.| +..+.+|-+.+..||.+|++.
T Consensus 18 ~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~le 53 (78)
T 1ucr_A 18 SKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLE 53 (78)
T ss_dssp HSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccccchHHHHHHHccccCHHHHHHHHHHHHhcCceE
Confidence 34566789999999 999999999999999999883
No 299
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=48.12 E-value=1e+02 Score=35.58 Aligned_cols=51 Identities=16% Similarity=0.117 Sum_probs=43.0
Q ss_pred HHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhccc
Q 015984 101 KLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 166 (397)
Q Consensus 101 ~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~ 166 (397)
.+|+.+++.|+|.+|...+... ..|.+.++.+...+++..|-...+||.+.
T Consensus 1200 ~iGd~le~eg~YeeA~~~Y~kA---------------~ny~rLA~tLvkLge~q~AIEaarKA~n~ 1250 (1630)
T 1xi4_A 1200 QVGDRCYDEKMYDAAKLLYNNV---------------SNFGRLASTLVHLGEYQAAVDGARKANST 1250 (1630)
T ss_pred HHHHHHHhcCCHHHHHHHHHhh---------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCH
Confidence 5888888888888888887762 47888899999999999999999998654
No 300
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=47.81 E-value=23 Score=29.05 Aligned_cols=43 Identities=12% Similarity=-0.075 Sum_probs=36.0
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE--EeccCCcE
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG--SIDQVEAV 357 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g--kIDQv~gi 357 (397)
..-.|.+.||+.+|+++.++.+.+.+++..|-|.= +.|..++.
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~ 93 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIK 93 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCE
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCce
Confidence 35579999999999999999999999999999864 55665443
No 301
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=47.09 E-value=39 Score=28.79 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=39.3
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCcchHHHHH
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQW 370 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~~~~l~~w 370 (397)
-.+|-++||..+|++++-+-+.+.+|-.+|.|.- ..|.|...++ +.|.++
T Consensus 168 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~-~~L~~~ 217 (220)
T 3dv8_A 168 LKITHETIANHLGSHREVITRMLRYFQVEGLVKL----SRGKITILDS-KRLETL 217 (220)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH-HHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----CCCEEEEeCH-HHHHHH
Confidence 3789999999999999999999999999998853 3566666543 455444
No 302
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=46.69 E-value=1.1e+02 Score=24.68 Aligned_cols=41 Identities=15% Similarity=0.250 Sum_probs=28.9
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~gi 357 (397)
..+|..+||+.+++++.-+=..+.+|...|-+. +.|..++-
T Consensus 51 ~~~t~~eLa~~l~~~~~tvsr~v~~Le~~glVr-~~~~~DrR 91 (148)
T 4fx0_A 51 IDLTMSELAARIGVERTTLTRNLEVMRRDGLVR-VMAGADAR 91 (148)
T ss_dssp ---CHHHHHHHHTCCHHHHHHHHHHHHHTTSBC---------
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEE-eeCCCCCC
Confidence 459999999999999999999999999999984 55666663
No 303
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=46.57 E-value=1.1e+02 Score=29.47 Aligned_cols=91 Identities=15% Similarity=0.110 Sum_probs=59.3
Q ss_pred HHHHHHHHHHh----hhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhh----cCChHHHHHHHHHhcccccC
Q 015984 98 IREKLADLYES----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLVSS 169 (397)
Q Consensus 98 l~~~La~~~e~----~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~----~~d~~~A~~~l~ka~~~~~~ 169 (397)
-...|+.+|.. .+++++|.+.+.... +. + -.+.+.....+|.. .+|+.+|..++.++...
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~-~~--~------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--- 180 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAA-EQ--G------RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--- 180 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-HT--T------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-HC--C------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---
Confidence 34678888888 789999998888742 22 1 13455566677776 77888888888887654
Q ss_pred cchHHHHHHHHHHHHHHHHH----HHhHHHHHHHHHHHHH
Q 015984 170 SQQEVLNLQYKVCYARILDL----KRKFLEAALRYYDISQ 205 (397)
Q Consensus 170 ~~~~~l~~~~~~~~~~~~~~----~r~f~~Aa~~y~e~~~ 205 (397)
+++. -....|.+|.. .+++.+|..+|..+..
T Consensus 181 -~~~~----a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 215 (490)
T 2xm6_A 181 -GNVW----SCNQLGYMYSRGLGVERNDAISAQWYRKSAT 215 (490)
T ss_dssp -TCHH----HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred -CCHH----HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH
Confidence 1221 23344555555 6777777777766554
No 304
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=46.47 E-value=53 Score=25.65 Aligned_cols=37 Identities=14% Similarity=0.012 Sum_probs=34.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEec
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkID 352 (397)
..++..+||+.+|+|..-+-..+..|...|.+...-+
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~ 66 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQ 66 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEec
Confidence 5679999999999999999999999999999988776
No 305
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=46.43 E-value=32 Score=28.38 Aligned_cols=43 Identities=9% Similarity=-0.066 Sum_probs=34.5
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIH 359 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~ 359 (397)
..++.++||+.+|+|+..+++.+.++...|-+...=- ..|+.-
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L 71 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGL 71 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEe
Confidence 4689999999999999999999999999999876533 334433
No 306
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=45.90 E-value=16 Score=27.57 Aligned_cols=32 Identities=9% Similarity=0.068 Sum_probs=30.9
Q ss_pred cCHHHHHHHhCCChHHHHHHHHHhHhcCceEE
Q 015984 318 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (397)
Q Consensus 318 Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g 349 (397)
+|..+||+.||+|...|-..|-+|-.+|.|..
T Consensus 31 ~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 31 ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 99999999999999999999999999999976
No 307
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=45.84 E-value=57 Score=28.07 Aligned_cols=50 Identities=26% Similarity=0.193 Sum_probs=39.1
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCcchHHHHH
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQW 370 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~~~~l~~w 370 (397)
-.+|-++||..+|++++-+-+.+.+|..+|.|.- ..|.|...++ +.|..+
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~-~~L~~~ 228 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLAL----DGKRIKIIDC-DRLQKT 228 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH-HHHHHH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEee----CCCEEEEeCH-HHHHHH
Confidence 4689999999999999999999999999998853 2455666553 455444
No 308
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=45.72 E-value=76 Score=24.46 Aligned_cols=63 Identities=8% Similarity=0.075 Sum_probs=45.2
Q ss_pred HHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc--EEEE--CC-cchHHHHHHHHHHHHHHHHHHHH
Q 015984 323 LGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA--VIHF--ED-DTEELQQWDQQIVGLCQALNDIL 385 (397)
Q Consensus 323 La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g--iV~f--~~-~~~~l~~w~~~I~~l~~~v~~v~ 385 (397)
|++.+++++.-+-..|.+|..+|-|...-+..+| ...| +. ..+.+..|......+...++.+.
T Consensus 32 l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l~~~~~~~~~~~~~i~~~l 99 (108)
T 3l7w_A 32 IKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHLVYLTKEWSVYKMTIDGIV 99 (108)
T ss_dssp HTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334689999999999999999999988765444 2223 22 34677778777777777766654
No 309
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=44.44 E-value=1e+02 Score=23.38 Aligned_cols=37 Identities=5% Similarity=0.067 Sum_probs=33.6
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEec
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkID 352 (397)
..+++.+||+.+|+|..-+-..+..|...|.+...-+
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4589999999999999999999999999999987654
No 310
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=44.31 E-value=97 Score=25.99 Aligned_cols=100 Identities=14% Similarity=0.056 Sum_probs=63.1
Q ss_pred HHHHHHHHhhcCCCH-HHHHHHHHHHhcCCcchhhh--HHHHHHHHHHhCCCC----hHHHHHHHHHHHHhhccccchHH
Q 015984 20 QYKHILSSVISSNDI-VQAKKFIDHMLSDDVPLVVS--RQLLQTFAQELGRLE----PETQKEIANYTLAQIQPRVVSFE 92 (397)
Q Consensus 20 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~s--r~~~~~~~~~l~~l~----~~~~~~~~~~~l~~~~~~~~~~e 92 (397)
.|.+-+.+. ++.|| +-|-.+|.-+.+. .|---+ ..+|...+..+...+ +.--..++...++.+....-.|.
T Consensus 12 ~fE~~i~~y-~gdDPL~~w~~YI~W~e~~-~P~g~~~l~~lLErc~~~f~~~~~YknD~RyLklWl~ya~~~~dp~~if~ 89 (152)
T 4a1g_A 12 MLEAHMQSY-KGNDPLGEWERYIQWVEEN-FPENKEYLITLLEHLMKEFLDKKKYHNDPRFISYCLKFAEYNSDLHQFFE 89 (152)
T ss_dssp HHHHHTTSC-CSSCHHHHHHHHHHHHHTT-CSSCTHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHTTBSCHHHHHH
T ss_pred HHHHHHHhC-CCCCCHHHHHHHHHHHHHH-cCCCchhHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhcCCHHHHHH
Confidence 455555554 44554 6777777777632 221111 256666666676553 33347777777776644222222
Q ss_pred --------HHHHHHHHHHHHHHHhhhcHHHHHHHHhh
Q 015984 93 --------EQVLIIREKLADLYESEQQWSKAAQMLSG 121 (397)
Q Consensus 93 --------~q~~~l~~~La~~~e~~~d~~~Aa~~L~~ 121 (397)
.+.|.+...-|.++|..|+|.+|..++..
T Consensus 90 ~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 126 (152)
T 4a1g_A 90 FLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQR 126 (152)
T ss_dssp HHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45568888899999999999999999864
No 311
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=44.14 E-value=87 Score=24.59 Aligned_cols=35 Identities=9% Similarity=0.163 Sum_probs=32.6
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gk 350 (397)
..+++.+||+.+|+|..-+-..+..|...|.+...
T Consensus 55 ~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~ 89 (122)
T 1u2w_A 55 EELCVCDIANILGVTIANASHHLRTLYKQGVVNFR 89 (122)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 56899999999999999999999999999999775
No 312
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=44.01 E-value=1.5e+02 Score=25.15 Aligned_cols=117 Identities=18% Similarity=0.231 Sum_probs=70.4
Q ss_pred HHH-hhcCCCHHHHHHHHHHHhcCCcchhhhHHHHH----HHHHHhCCCChHHHHHHHHHHHHhhccccchHHHHHHHHH
Q 015984 25 LSS-VISSNDIVQAKKFIDHMLSDDVPLVVSRQLLQ----TFAQELGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIR 99 (397)
Q Consensus 25 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sr~~~~----~~~~~l~~l~~~~~~~~~~~~l~~~~~~~~~~e~q~~~l~ 99 (397)
+++ +++++|++.|-.|+.-+=..+.|..= .+|. -+-.++..+|++ +-..=+--+.|=
T Consensus 3 ~~~~~~~p~~yd~W~~yl~llE~~g~p~~d--~~l~rlrd~YerAia~~Pp~----------------k~~~wrrYI~LW 64 (161)
T 4h7y_A 3 LGSIMMMANNPEDWLSLLLKLEKNSVPLSD--ALLNKLIGRYSQAIEALPPD----------------KYGQNESFARIQ 64 (161)
T ss_dssp -------CCSHHHHHHHHHHHHHHTCSCCH--HHHHHHHHHHHHHHHHSCGG----------------GGTTCHHHHHHH
T ss_pred ccceeeCCCCHHHHHHHHHHHHHcCCCchh--hHHHHHHHHHHHHHHcCCcc----------------ccccHHHHHHHH
Confidence 345 56778899999998877633333110 2222 222333445544 211223334555
Q ss_pred HHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccc
Q 015984 100 EKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV 167 (397)
Q Consensus 100 ~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~ 167 (397)
.+.|.+ ++.+|.++|..+.+...-- .+.- ..+|+--++.-+..+|..+|+.++-+|...-
T Consensus 65 IrYA~~-~ei~D~d~aR~vy~~a~~~--hKkF-----AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 65 VRFAEL-KAIQEPDDARDYFQMARAN--CKKF-----AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHH-HHHHCGGGCHHHHHHHHHH--CTTB-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHH-HHhcCHHHHHHHHHHHHHH--hHHH-----HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 666755 5558888888888876432 1332 6778888888888999999999999987743
No 313
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=43.91 E-value=58 Score=36.17 Aligned_cols=105 Identities=13% Similarity=0.038 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHhhchhccC--CCCCch--------------hHHHHHHHHHHHHHhhcCChHHHHHHHH
Q 015984 98 IREKLADLYESEQQWSKAAQMLSGIDLDSG--MRVIDD--------------TFRLSKCVQIARLYLEDDDAVNAEAFIN 161 (397)
Q Consensus 98 l~~~La~~~e~~~d~~~Aa~~L~~i~~et~--~~~~~~--------------~~kle~~L~i~Rl~L~~~d~~~A~~~l~ 161 (397)
.+..+|..|...|++++|+..+..--..-+ ...... .....+|+.+++++=..+-+..+-.+..
T Consensus 844 ~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~ 923 (1139)
T 4fhn_B 844 AVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSL 923 (1139)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 358899999999999999999977421110 000000 0124689999999999898888888887
Q ss_pred HhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 015984 162 KASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDI 203 (397)
Q Consensus 162 ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~ 203 (397)
.|-.... .+++.++..++...-+.+..-++|.+|+......
T Consensus 924 lAi~~~~-~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~ 964 (1139)
T 4fhn_B 924 LADASKE-TDDEDLSIAITHETLKTACAAGKFDAAHVALMVL 964 (1139)
T ss_dssp HHHHHCC-SCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH
T ss_pred HHHHhcc-CCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC
Confidence 7755432 2466666666666667778888998876655433
No 314
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=43.72 E-value=45 Score=28.13 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=38.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCcchHHHH
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQ 369 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~~~~l~~ 369 (397)
-.+|-++||..+|++++-+-+.+.+|..+|.|.- ..|.|...++ +.|..
T Consensus 145 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~-~~L~~ 193 (202)
T 2zcw_A 145 LKATHDELAAAVGSVRETVTKVIGELAREGYIRS----GYGKIQLLDL-KGLKE 193 (202)
T ss_dssp EECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH-HHHHH
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----CCCEEEEeCH-HHHHH
Confidence 4588999999999999999999999999999862 3466666543 44443
No 315
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=43.45 E-value=1e+02 Score=24.21 Aligned_cols=88 Identities=16% Similarity=0.089 Sum_probs=64.5
Q ss_pred HHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhh----cCChHHHHHHHHHhcccccCcchHHHHH
Q 015984 102 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFLVSSSQQEVLNL 177 (397)
Q Consensus 102 La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~----~~d~~~A~~~l~ka~~~~~~~~~~~l~~ 177 (397)
|+.+|+..+.+++|.+.+..-- +. + -.+-+.....+|.. .+|+.+|..+++++... ++++-
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa-~~--g------~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g~~~a-- 95 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKAC-EL--N------SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL----NDQDG-- 95 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHH-HT--T------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----TCHHH--
T ss_pred HHHHHHcCCCHHHHHHHHHHHH-cC--C------CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----CCHHH--
Confidence 8999998888888888877632 21 1 12456667778887 89999999999999765 22221
Q ss_pred HHHHHHHHHHHH----HHhHHHHHHHHHHHHHh
Q 015984 178 QYKVCYARILDL----KRKFLEAALRYYDISQI 206 (397)
Q Consensus 178 ~~~~~~~~~~~~----~r~f~~Aa~~y~e~~~~ 206 (397)
....|.+|.. .+|+.+|..+|..+...
T Consensus 96 --~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 96 --CLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp --HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 2335677777 89999999999888773
No 316
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=43.45 E-value=93 Score=31.93 Aligned_cols=83 Identities=20% Similarity=0.030 Sum_probs=55.1
Q ss_pred HHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhccccc------CcchHHHHHH
Q 015984 105 LYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS------SSQQEVLNLQ 178 (397)
Q Consensus 105 ~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~------~~~~~~l~~~ 178 (397)
+....|++++|.++...+.- + ..|-..+++++..+|+..|+..+.++.+.-. ..++++.
T Consensus 661 ~~l~~~~~~~A~~~~~~~~~---------~---~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~--- 725 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTDESA---------E---MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEG--- 725 (814)
T ss_dssp HHHHHTCHHHHHHHHTTCCC---------H---HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHH---
T ss_pred hhhhcCCHHHHHHHHHhhCc---------H---hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHH---
Confidence 34567788888877655431 1 4788889999999999999999998755321 1122221
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Q 015984 179 YKVCYARILDLKRKFLEAALRYYDI 203 (397)
Q Consensus 179 ~~~~~~~~~~~~r~f~~Aa~~y~e~ 203 (397)
-...+++....++|..|...|+..
T Consensus 726 -~~~~~~~a~~~~~~~~A~~~~~~~ 749 (814)
T 3mkq_A 726 -LVTLAKDAETTGKFNLAFNAYWIA 749 (814)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHcCchHHHHHHHHHc
Confidence 123467777788888887777654
No 317
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=43.41 E-value=22 Score=26.08 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=24.4
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHh
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRM 341 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~m 341 (397)
|=+.+++.+|..+|++.+++|..+...
T Consensus 46 YL~~~l~eia~~l~~~~~eve~vL~~l 72 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCSVEELEKVRQKV 72 (76)
T ss_dssp TTCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 889999999999999999999987653
No 318
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=43.15 E-value=1.3e+02 Score=24.33 Aligned_cols=41 Identities=10% Similarity=0.084 Sum_probs=38.1
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
..++..+||+.+|+++.-+=..+.+|...|-+.=.-|..|+
T Consensus 45 ~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~Dr 85 (151)
T 4aik_A 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDR 85 (151)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCC
Confidence 56778999999999999999999999999999999998887
No 319
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=42.95 E-value=27 Score=27.93 Aligned_cols=42 Identities=10% Similarity=0.157 Sum_probs=37.3
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
...++..+||+.+|++..-+-..+.+|...|-+.-.-|..++
T Consensus 52 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~ 93 (147)
T 1z91_A 52 HETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDE 93 (147)
T ss_dssp HSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCT
T ss_pred CCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCC
Confidence 357999999999999999999999999999999877765554
No 320
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=42.39 E-value=33 Score=23.92 Aligned_cols=29 Identities=17% Similarity=0.430 Sum_probs=26.1
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHh
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIF 343 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~ 343 (397)
+...|.++||+.+|+|+.-|...+.+...
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 48999999999999999999999888764
No 321
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=42.32 E-value=41 Score=28.51 Aligned_cols=51 Identities=16% Similarity=0.223 Sum_probs=39.9
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCcchHHHHH
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQW 370 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~~~~l~~w 370 (397)
--.+|-++||..+|++++-+-+.+.+|-.+|.|.- ..|.|...++ +.|.++
T Consensus 161 ~~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~-~~L~~~ 211 (216)
T 4ev0_A 161 LFQIRHHELAALAGTSRETVSRVLHALAEEGVVRL----GPGTVEVREA-ALLEEI 211 (216)
T ss_dssp EEECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH-HHHHHH
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----cCCEEEEeCH-HHHHHH
Confidence 46789999999999999999999999999999852 3455665543 455444
No 322
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=42.19 E-value=35 Score=32.89 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=36.0
Q ss_pred HHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE
Q 015984 308 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (397)
Q Consensus 308 l~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g 349 (397)
++.+.+-...+|-.+||+.+|+|..-+-+.+.+|+.+|.+..
T Consensus 21 il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 21 VYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 344444567899999999999999999999999999999854
No 323
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=42.16 E-value=1.6e+02 Score=27.68 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=22.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcHHHHHHHHhh
Q 015984 90 SFEEQVLIIREKLADLYESEQQWSKAAQMLSG 121 (397)
Q Consensus 90 ~~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~ 121 (397)
++|-+ +....++.-|-+.++|.+|.++|..
T Consensus 29 yYEAh--Q~~Rtl~~Ry~~~~~~~eAidlL~~ 58 (312)
T 2wpv_A 29 YYEAH--QTLRTIANRYVRSKSYEHAIELISQ 58 (312)
T ss_dssp HHHHH--HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHH--HHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 57777 7777777777778888888777654
No 324
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=40.77 E-value=54 Score=28.40 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=33.5
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gk 350 (397)
..++..+||+.+|+|+.-+-..+.+|...|.|.+.
T Consensus 32 ~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 32 KEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 67999999999999999999999999999999886
No 325
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=40.68 E-value=1.2e+02 Score=23.30 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=33.3
Q ss_pred cCHHHHHHHh-CCChHHHHHHHHHhHhcCceEEEec
Q 015984 318 ISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSID 352 (397)
Q Consensus 318 Isl~~La~ll-~ls~~~~E~~ls~mI~~grl~gkID 352 (397)
+++.+|++.+ |+++.-+-..+.+|...|-+.-+.+
T Consensus 43 ~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~ 78 (111)
T 3df8_A 43 QNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG 78 (111)
T ss_dssp BCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES
T ss_pred CCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec
Confidence 5699999999 9999999999999999999999888
No 326
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=40.37 E-value=31 Score=35.31 Aligned_cols=64 Identities=11% Similarity=0.150 Sum_probs=51.0
Q ss_pred HHHHHhchhhhhhCCCch--hhHHHHHHHHHHHHHHhhccc---cCH-HHHHHHhCCChHHHHHHHHHhH
Q 015984 279 AFAEELKPHQKALLPDNF--TVLDRAMIEHNLLSASKLYTN---ISF-EELGTLLGIAPQKAEKIASRMI 342 (397)
Q Consensus 279 ~F~~~L~~h~~~~~~d~~--~~L~~~v~EhNl~~is~~Y~~---Isl-~~La~ll~ls~~~~E~~ls~mI 342 (397)
+|++..+.|......|+. ..|+.+|.+.-+-+|.++|.+ +.+ ..-.+-+..+|+++|.+|.++.
T Consensus 498 ~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~~~~~k~~~KyiKytpe~le~~L~~LF 567 (571)
T 2pft_A 498 GLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGDMIDRLF 567 (571)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSCHHHHCCCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCCCCccccCHHHHHHHHHHHh
Confidence 677777888777778874 678899999999999998654 444 3466788999999999998864
No 327
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=40.36 E-value=44 Score=28.59 Aligned_cols=50 Identities=16% Similarity=0.305 Sum_probs=38.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccC-CcEEEECCcchHHHHH
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQV-EAVIHFEDDTEELQQW 370 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv-~giV~f~~~~~~l~~w 370 (397)
-.+|-++||..+|++++-+-+.+.+|..+|.|. .. .|.|...++ +.|.++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~~i~i~d~-~~L~~~ 216 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGILE----RVNQRTLLLKDL-QKLKEF 216 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----ESSSSEEEESCH-HHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE----EcCCCEEEEcCH-HHHHHH
Confidence 468899999999999999999999999999874 33 455655543 455444
No 328
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=39.96 E-value=94 Score=23.26 Aligned_cols=38 Identities=13% Similarity=0.089 Sum_probs=34.3
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEecc
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQ 353 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQ 353 (397)
...++.+||+.+|++..-+-..+..|...|.+..+-+.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNI 72 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 45899999999999999999999999999999876543
No 329
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=39.83 E-value=64 Score=27.62 Aligned_cols=49 Identities=18% Similarity=0.305 Sum_probs=38.2
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCcchHHHHH
Q 015984 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQW 370 (397)
Q Consensus 317 ~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~~~~l~~w 370 (397)
.+|-++||..+|++++-+-+.+.+|..+|.|.- ..|.|...++ +.|.++
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~-~~L~~~ 225 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRL----EGKSVLISDS-ERLARR 225 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH-HHHHHH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe----cCCEEEEcCH-HHHHHh
Confidence 589999999999999999999999999998753 3455655543 445433
No 330
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=39.60 E-value=80 Score=27.33 Aligned_cols=43 Identities=12% Similarity=0.023 Sum_probs=36.0
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcE
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAV 357 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~gi 357 (397)
...++..+||+.+|++..-+=..+.+|...|-|.-.-|..++-
T Consensus 60 ~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR 102 (207)
T 2fxa_A 60 LNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKR 102 (207)
T ss_dssp HTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC-----
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCc
Confidence 3679999999999999999999999999999999998877763
No 331
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=38.87 E-value=44 Score=24.96 Aligned_cols=35 Identities=11% Similarity=-0.020 Sum_probs=32.3
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gk 350 (397)
..+++.+||+.+|+|..-+-..+..|...|.+...
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~ 76 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERV 76 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 45899999999999999999999999999999764
No 332
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=38.57 E-value=57 Score=27.31 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=38.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCcchHHHHH
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQW 370 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~~~~l~~w 370 (397)
-.+|-++||..+|++++-+-+.+.+|..+|.|.- ..|.|...++ +.|.++
T Consensus 138 ~~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~-~~L~~~ 187 (195)
T 3b02_A 138 VTVSHEEIADATASIRESVSKVLADLRREGLIAT----AYRRVYLLDL-AALERE 187 (195)
T ss_dssp EECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEEE----ETTEEEECCH-HHHHHH
T ss_pred ccCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----cCCEEEEeCH-HHHHHH
Confidence 3588999999999999999999999999998753 2455665543 444433
No 333
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=38.56 E-value=31 Score=30.41 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=36.2
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCc----------chHHHHHHHHHHHHHHHHH
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDD----------TEELQQWDQQIVGLCQALN 382 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~----------~~~l~~w~~~I~~l~~~v~ 382 (397)
-.+|-++||..+|++++-+-+.+.+|..+|.|.- ..|-|...++ ..-+..|+..++.+-+.++
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~~~L~~~a~~~~~~~~~~~~~~~~l~~~~~ 248 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRVLASLKRENILDK----KKNKIIVYNLGELKHLSEQTSYYSDPNSSSVDKLAAALD 248 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----CSSEEEESCHHHHHHHHTSSCCCC---------------
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHHHHHHCCCeEe----CCCEEEEecHHHHHHHHccCcccccCCchhHHHHHHhhc
Confidence 4689999999999999999999999999998853 3444444332 1224557777766655443
No 334
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=38.05 E-value=2.2e+02 Score=25.46 Aligned_cols=100 Identities=20% Similarity=0.189 Sum_probs=65.0
Q ss_pred HHHHHHHHHhhcCCC-HHHHHHHHHHHhcC---Cc----chhhhHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhhcc
Q 015984 19 EQYKHILSSVISSND-IVQAKKFIDHMLSD---DV----PLVVSRQLLQTFAQELGRLE----PETQKEIANYTLAQIQP 86 (397)
Q Consensus 19 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~----~~~~sr~~~~~~~~~l~~l~----~~~~~~~~~~~l~~~~~ 86 (397)
..|..-|.++=.+.| ++-|-.||.-+.+. .. ++ ..+|...+..+...+ +.--..++...++.+..
T Consensus 56 ~~fE~~i~~~~~~dDPL~~w~~YIkW~ee~yP~g~~~~s~L---~~lLErc~~~F~~~~rYknD~RyLklWl~Ya~~~~~ 132 (223)
T 4aez_C 56 MGHERKIETSESLDDPLQVWIDYIKWTLDNFPQGETKTSGL---VTLLERCTREFVRNPLYKDDVRYLRIWMQYVNYIDE 132 (223)
T ss_dssp HHHHHHHHHGGGSSCTHHHHHHHHHHHHHHCTTCCCTTTCH---HHHHHHHHHHTTTCGGGTTCHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHhcccCCCChHHHHHHHHHHHHhCcCCCcchhhH---HHHHHHHHHHhcccccccCCHHHHHHHHHHHHccCC
Confidence 346666666434455 47777777766532 11 12 268888888887764 33447777777765532
Q ss_pred ccchHH--------HHHHHHHHHHHHHHHhhhcHHHHHHHHhh
Q 015984 87 RVVSFE--------EQVLIIREKLADLYESEQQWSKAAQMLSG 121 (397)
Q Consensus 87 ~~~~~e--------~q~~~l~~~La~~~e~~~d~~~Aa~~L~~ 121 (397)
-.-.|. .+.|-+...-|.++|..|+|.+|..++..
T Consensus 133 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 175 (223)
T 4aez_C 133 PVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQK 175 (223)
T ss_dssp HHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 222222 34567888899999999999999999864
No 335
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=37.66 E-value=1.6e+02 Score=24.71 Aligned_cols=48 Identities=10% Similarity=0.024 Sum_probs=32.3
Q ss_pred hHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHH-----------HhHHHHHHHHHHHHHh
Q 015984 153 AVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLK-----------RKFLEAALRYYDISQI 206 (397)
Q Consensus 153 ~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------r~f~~Aa~~y~e~~~~ 206 (397)
+..|...+.+|...-.. +.+ -+.+.|..|... ++|.+|..+|..+...
T Consensus 62 ~~eAi~~le~AL~ldP~--~~~----A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPK--KDE----AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHHHHHHHHHCTT--CHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcC--cHH----HHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 56888888888776433 221 233455555443 6999999999999886
No 336
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=37.15 E-value=34 Score=34.07 Aligned_cols=108 Identities=12% Similarity=0.026 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHhhchhcc----CCC-----CCchh----HHHHHHHHHHHHHhhcCChHHHHHHHHHhc
Q 015984 98 IREKLADLYESEQQWSKAAQMLSGIDLDS----GMR-----VIDDT----FRLSKCVQIARLYLEDDDAVNAEAFINKAS 164 (397)
Q Consensus 98 l~~~La~~~e~~~d~~~Aa~~L~~i~~et----~~~-----~~~~~----~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~ 164 (397)
+...|+..|.+.|+|.++.+.+.+-...+ |.+ ..+.. .++..|.+.+..+...|++..|.....|+.
T Consensus 96 i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 96 VETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp -------------CHHHHTTTTTCC----------------CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 34455666666666666666655422111 000 00110 123445566666777777777777777774
Q ss_pred ccc-------cCc--chHHH----------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 015984 165 FLV-------SSS--QQEVL----------NLQYKVCYARILDLKRKFLEAALRYYDISQ 205 (397)
Q Consensus 165 ~~~-------~~~--~~~~l----------~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~ 205 (397)
... .+. +++++ ......-.+.+|...|.|.+|.++|.....
T Consensus 176 ~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~ 235 (449)
T 1b89_A 176 STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG 235 (449)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 320 000 00000 000112244567777888888888877665
No 337
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=36.90 E-value=34 Score=28.86 Aligned_cols=33 Identities=12% Similarity=0.299 Sum_probs=30.7
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~ 348 (397)
-.+|-++||..+|++++-+-+.+.+|..+|.|.
T Consensus 163 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 195 (207)
T 2oz6_A 163 IKITRQEIGRIVGCSREMVGRVLKSLEEQGLVH 195 (207)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 368999999999999999999999999999885
No 338
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=36.64 E-value=1.2e+02 Score=23.86 Aligned_cols=58 Identities=14% Similarity=0.202 Sum_probs=38.7
Q ss_pred cCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCcchHHHHHHHHHHHHH
Q 015984 318 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWDQQIVGLC 378 (397)
Q Consensus 318 Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~~~~l~~w~~~I~~l~ 378 (397)
+..++++..+|+++++++..+..++..|++..- +..++...+.. +....|..++...+
T Consensus 18 ~~~~~l~~~~~l~~~~l~~~l~~l~~~~~~~~~-~~~~~~~~~~~--~~~~~l~~~l~~~L 75 (135)
T 2v9v_A 18 LDWQEAATRASLSLEETRKLLQSMAAAGQVTLL-RVENDLYAIST--ERYQAWWQAVTRAL 75 (135)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTCEEEE-EETTEEEEEEH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHhCCcEEEE-ecCCCeEEecH--HHHHHHHHHHHHHH
Confidence 444999999999999999999999999996543 32222223432 44445555544443
No 339
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=36.28 E-value=39 Score=28.47 Aligned_cols=48 Identities=15% Similarity=0.111 Sum_probs=38.1
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCc
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDD 363 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~ 363 (397)
..++.++||+.+|+|+..+++++.++-..|-+...=-...|+.--..|
T Consensus 27 ~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (162)
T 3k69_A 27 SKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLDLAL 74 (162)
T ss_dssp SCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECCSCG
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeEecCCh
Confidence 459999999999999999999999999999997764443455433333
No 340
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=35.75 E-value=39 Score=23.90 Aligned_cols=27 Identities=19% Similarity=0.554 Sum_probs=24.2
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhH
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMI 342 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI 342 (397)
...|.++||+.+|+|+.-|...+.+.+
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~ 55 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKAL 55 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 789999999999999999998877655
No 341
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=35.26 E-value=58 Score=20.15 Aligned_cols=29 Identities=10% Similarity=0.092 Sum_probs=23.8
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHh
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIF 343 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~ 343 (397)
....+..++|+.+|++..-+...+.+.-.
T Consensus 19 ~~g~s~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 19 LLNVSLHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHhhHHh
Confidence 46789999999999999988887765543
No 342
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=34.95 E-value=58 Score=21.79 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=25.6
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhHh
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMIF 343 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~ 343 (397)
++.-.+..++|+.+|+|+.-|...+.+...
T Consensus 10 ~~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 10 IDEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HHTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 467789999999999999999988877653
No 343
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=34.91 E-value=73 Score=23.72 Aligned_cols=63 Identities=13% Similarity=-0.027 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhcCC---hHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Q 015984 138 SKCVQIARLYLEDDD---AVNAEAFINKASFLVSSSQQEVLNLQYKVCYARILDLKRKFLEAALRYYDISQI 206 (397)
Q Consensus 138 e~~L~i~Rl~L~~~d---~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~~~ 206 (397)
+++..-...+...++ ..+|...+.++...-..+ + + =....|..+...++|.+|..+|..+...
T Consensus 7 ~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~--~--r--A~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 7 TQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN--E--A--ALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC--H--H--HHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC--H--H--HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444444555544444 799999999988764432 1 1 2233589999999999999999999884
No 344
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=34.82 E-value=66 Score=27.71 Aligned_cols=41 Identities=17% Similarity=0.250 Sum_probs=32.9
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECC
Q 015984 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 362 (397)
Q Consensus 317 ~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~ 362 (397)
.+|-++||..+|++++-+-+.+.+|-.+| | ..+ .|.|...+
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g-i--~~~--~~~i~I~d 218 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSRLKAAG-V--TVK--RNHAEIED 218 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHHHGGGT-E--ECC--TTEEEESC
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCC-e--Eee--CCEEEEcC
Confidence 35678999999999999999999999999 6 333 45555544
No 345
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=34.82 E-value=1.4e+02 Score=28.35 Aligned_cols=29 Identities=21% Similarity=0.455 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhcHHHHHHHHhh
Q 015984 91 FEEQVLIIREKLADLYESEQQWSKAAQMLSG 121 (397)
Q Consensus 91 ~e~q~~~l~~~La~~~e~~~d~~~Aa~~L~~ 121 (397)
+|-+ +....++.-|.+.++|.+|.++|..
T Consensus 32 YEAH--Q~~RTi~~Ry~~~k~y~eAidLL~~ 60 (336)
T 3lpz_A 32 YEAA--QETRLVAARYSKQGNWAAAVDILAS 60 (336)
T ss_dssp HHHH--HHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHH--HHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 7877 8888899999999999999987765
No 346
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=34.43 E-value=2.9e+02 Score=25.80 Aligned_cols=42 Identities=14% Similarity=0.048 Sum_probs=27.4
Q ss_pred HHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCC
Q 015984 103 ADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDD 152 (397)
Q Consensus 103 a~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d 152 (397)
-+=|...||++||...+.++..-. ..-++.-..+-..++.++
T Consensus 18 l~Ey~~~~d~~Ea~~ci~el~~p~--------~~~~~v~~~i~~~le~~~ 59 (339)
T 1ug3_A 18 IEEYLHLNDMKEAVQCVQELASPS--------LLFIFVRHGVESTLERSA 59 (339)
T ss_dssp HHHHHHHCCHHHHHHHHHTTCCGG--------GHHHHHHHHHHHHTTTCH
T ss_pred HHHHHhCCCHHHHHHHHHHcCCcc--------cHHHHHHHHHHHHhCCCH
Confidence 333556699999999999976432 233555556666666653
No 347
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=33.93 E-value=8.6 Score=35.60 Aligned_cols=38 Identities=13% Similarity=0.299 Sum_probs=0.0
Q ss_pred cccCHHHHHHHh-CCChHHHHHHHHHhHhcCceEEEecc
Q 015984 316 TNISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSIDQ 353 (397)
Q Consensus 316 ~~Isl~~La~ll-~ls~~~~E~~ls~mI~~grl~gkIDQ 353 (397)
.=|+++.|++.| +++++++.+.+-.|+.+|.|+-.||-
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 456777899877 79999999999999999999999985
No 348
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=33.91 E-value=1.6e+02 Score=22.53 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=34.4
Q ss_pred ccccCHHHHHHHhC----CChHHHHHHHHHhHhcCceEEEec
Q 015984 315 YTNISFEELGTLLG----IAPQKAEKIASRMIFEDRMRGSID 352 (397)
Q Consensus 315 Y~~Isl~~La~ll~----ls~~~~E~~ls~mI~~grl~gkID 352 (397)
...++..+||+.++ ++..-+=..+.+|...|-+.-.-|
T Consensus 22 ~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 22 KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 46799999999999 889999999999999999987666
No 349
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=33.63 E-value=1.7e+02 Score=22.88 Aligned_cols=35 Identities=14% Similarity=0.103 Sum_probs=32.2
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g 349 (397)
-..+++.+||+.+|++..-+-..+.+|...|-+.-
T Consensus 29 ~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r 63 (139)
T 2x4h_A 29 GEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKK 63 (139)
T ss_dssp TSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEe
Confidence 46799999999999999999999999999998864
No 350
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=33.62 E-value=42 Score=28.34 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=30.4
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHHhHhcCceE
Q 015984 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (397)
Q Consensus 317 ~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~ 348 (397)
.+|-++||..+|++++-+-+.+.+|-.+|.|.
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~ 198 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 198 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 68999999999999999999999999999886
No 351
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=32.91 E-value=90 Score=27.04 Aligned_cols=50 Identities=22% Similarity=0.327 Sum_probs=38.5
Q ss_pred ccCHHHHHHHhCCCh-HHHHHHHHHhHhcCceEEEeccCCcEEEECCcchHHHHHH
Q 015984 317 NISFEELGTLLGIAP-QKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQQWD 371 (397)
Q Consensus 317 ~Isl~~La~ll~ls~-~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~~~~l~~w~ 371 (397)
.+|-++||..+|+++ +-+-+.+.+|-.+|.|.- ..|.|...++ +.|.++.
T Consensus 169 ~~t~~~lA~~lG~sr~etvsR~l~~l~~~glI~~----~~~~i~I~d~-~~L~~~~ 219 (238)
T 2bgc_A 169 NLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVY----KNSCFYVQNL-DYLKRYA 219 (238)
T ss_dssp CCCHHHHHHHTTCCCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH-HHHHHHC
T ss_pred cCCHHHHHHHhCCChHHHHHHHHHHHHHCCCEEe----cCCEEEEeCH-HHHHHHh
Confidence 688899999999999 899999999999998753 2455666543 4454443
No 352
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=32.83 E-value=43 Score=28.83 Aligned_cols=49 Identities=6% Similarity=0.084 Sum_probs=37.8
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCcchHHH
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDDTEELQ 368 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~~~~l~ 368 (397)
--.+|-++||..+|++++-+-+.+.+|-.+|.|.- ..|-|...++ +.|.
T Consensus 173 ~~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d~-~~L~ 221 (231)
T 3e97_A 173 VLPLGTQDIMARTSSSRETVSRVLKRLEAHNILEV----SPRSVTLLDL-AALE 221 (231)
T ss_dssp EECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----CSSCEEESCH-HHHH
T ss_pred ecCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe----cCCEEEEeCH-HHHH
Confidence 34689999999999999999999999999998853 3455555443 3443
No 353
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=32.81 E-value=43 Score=28.73 Aligned_cols=32 Identities=19% Similarity=0.370 Sum_probs=30.2
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHHhHhcCceE
Q 015984 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (397)
Q Consensus 317 ~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~ 348 (397)
.++-++||..+|++++-+-+.+.+|-.+|.|.
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~ 218 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLH 218 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEE
Confidence 47899999999999999999999999999886
No 354
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=32.32 E-value=1.8e+02 Score=22.83 Aligned_cols=44 Identities=7% Similarity=0.121 Sum_probs=36.7
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECC
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 362 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~ 362 (397)
..++..+||+.+|+++.-+=..+.+|...|-+.-. .++.+....
T Consensus 21 ~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~ 64 (142)
T 1on2_A 21 GYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTS 64 (142)
T ss_dssp SSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEECH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEch
Confidence 57999999999999999999999999999998764 235555553
No 355
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=32.13 E-value=47 Score=22.79 Aligned_cols=29 Identities=10% Similarity=0.159 Sum_probs=24.9
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhH
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMI 342 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI 342 (397)
++...|..++|+.+|+|+..|...+.+..
T Consensus 28 ~~~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 28 QLLGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 47889999999999999998887777654
No 356
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=31.71 E-value=84 Score=24.67 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=44.3
Q ss_pred CCChHHHHHHHHHhHhcCceEEEeccC-Cc--EEEEC--C-cchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 015984 328 GIAPQKAEKIASRMIFEDRMRGSIDQV-EA--VIHFE--D-DTEELQQWDQQIVGLCQALNDILDSMAKKGLPI 395 (397)
Q Consensus 328 ~ls~~~~E~~ls~mI~~grl~gkIDQv-~g--iV~f~--~-~~~~l~~w~~~I~~l~~~v~~v~~~i~~~~~~~ 395 (397)
++++.-+-..|.+|-.+|-|...-+.. +| -..|. . ..+.+..|......+...++.+.........|.
T Consensus 39 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~~~~~~~~i~~il~~~~~~~~~~ 112 (115)
T 4esb_A 39 FVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQLEEFKQSWGMVSTTVNNLLQGESRWSHPQ 112 (115)
T ss_dssp TCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHTTCC-------
T ss_pred CCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCcc
Confidence 588999999999999999999887532 23 23332 2 357788888888777777777655444443333
No 357
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=31.29 E-value=1.9e+02 Score=22.65 Aligned_cols=37 Identities=5% Similarity=0.082 Sum_probs=33.3
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEec
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkID 352 (397)
...++.+||+.+|++..-+-..+..+...|.+...-+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 3689999999999999999999999999999987544
No 358
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=31.17 E-value=47 Score=29.10 Aligned_cols=43 Identities=7% Similarity=0.115 Sum_probs=35.3
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECC
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 362 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~ 362 (397)
-.+|-+.||..+|++++-+-+.+.+|..+|.|.- ..|.|...+
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~----~~~~i~I~d 234 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISI----HKKKITVHK 234 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEECC
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEE----cCCEEEECC
Confidence 4678899999999999999999999999998863 245555444
No 359
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=31.00 E-value=19 Score=27.11 Aligned_cols=22 Identities=18% Similarity=0.179 Sum_probs=19.5
Q ss_pred hHHHHHHHHHhHhcCceEEEec
Q 015984 331 PQKAEKIASRMIFEDRMRGSID 352 (397)
Q Consensus 331 ~~~~E~~ls~mI~~grl~gkID 352 (397)
.+.||..+.+|...|+|.|+||
T Consensus 36 A~~VE~~Li~lAq~Gqi~~ki~ 57 (80)
T 1eij_A 36 VEQIELQLIQLAQMGRVRSKIT 57 (80)
T ss_dssp HHHHHHHHHHHHHCCSSCCCCC
T ss_pred HHHHHHHHHHHHHcCCCCCCcC
Confidence 3578999999999999999985
No 360
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=30.92 E-value=46 Score=34.10 Aligned_cols=64 Identities=11% Similarity=0.226 Sum_probs=49.2
Q ss_pred HHHHHhchhhhhhCCCch--hhHHHHHHHHHHHHHHhhccccCH--HHHHHHhCCChHHHHHHHHHhH
Q 015984 279 AFAEELKPHQKALLPDNF--TVLDRAMIEHNLLSASKLYTNISF--EELGTLLGIAPQKAEKIASRMI 342 (397)
Q Consensus 279 ~F~~~L~~h~~~~~~d~~--~~L~~~v~EhNl~~is~~Y~~Isl--~~La~ll~ls~~~~E~~ls~mI 342 (397)
.|++..+.|......|+. ..|++.|.+.-+-++.+||.+=.- ..-.+-+..+|+++|.++.++.
T Consensus 496 ~Fee~~~~q~~w~vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~~~k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 496 GFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKDSFKNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSSSGGGTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCcccCCHHHHHHHHHHhc
Confidence 577777788777788874 789999999999999998654322 3344566779999999999874
No 361
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=30.61 E-value=45 Score=28.63 Aligned_cols=34 Identities=21% Similarity=0.361 Sum_probs=30.7
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g 349 (397)
-.+|-++||..+|++++-+-+.+.+|..+|.|.-
T Consensus 162 ~~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~~ 195 (222)
T 1ft9_A 162 VDFTVEEIANLIGSSRQTTSTALNSLIKEGYISR 195 (222)
T ss_dssp ECCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSEE
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEE
Confidence 3589999999999999999999999999998753
No 362
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=30.58 E-value=2.7e+02 Score=24.43 Aligned_cols=102 Identities=14% Similarity=0.121 Sum_probs=67.3
Q ss_pred HHHHHHHHH-hhcCCCH-HHHHHHHHHHhcCCcchh-------hhHHHHHHHHHHhCCCC----hHHHHHHHHHHHHhh-
Q 015984 19 EQYKHILSS-VISSNDI-VQAKKFIDHMLSDDVPLV-------VSRQLLQTFAQELGRLE----PETQKEIANYTLAQI- 84 (397)
Q Consensus 19 ~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~-------~sr~~~~~~~~~l~~l~----~~~~~~~~~~~l~~~- 84 (397)
..|..-|.+ +=.+.|| +.|-.||.-+. ++.|-- ..+.+|...+..+...+ +.--..++...++.+
T Consensus 13 ~~fE~~l~~~l~~~dDPL~~w~~YIkW~e-e~yP~g~~~~~s~L~~~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~ 91 (202)
T 3esl_A 13 IAYEQRLLNDLEDMDDPLDLFLDYMIWIS-TSYIEVDSESGQEVLRSTMERCLIYIQDMETYRNDPRFLKIWIWYINLFL 91 (202)
T ss_dssp HHHHHHHHHTGGGCSCHHHHHHHHHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhccccCCCchHHHHHHHHHHH-HhCCCCCCcchhchHHHHHHHHHHHhcccccccCCHHHHHHHHHHHHhhc
Confidence 467777777 4444555 77788887765 332222 23468888888887764 334477777777774
Q ss_pred -----ccccch-HH------HHHHHHHHHHHHHHHhhhcHHHHHHHHhh
Q 015984 85 -----QPRVVS-FE------EQVLIIREKLADLYESEQQWSKAAQMLSG 121 (397)
Q Consensus 85 -----~~~~~~-~e------~q~~~l~~~La~~~e~~~d~~~Aa~~L~~ 121 (397)
.|+.++ |. .+.|.+...-|.++|..|+|.+|..++..
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 122221 11 34567888889999999999999999865
No 363
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=30.27 E-value=86 Score=23.22 Aligned_cols=35 Identities=11% Similarity=0.108 Sum_probs=31.8
Q ss_pred ccccCHHHHHHHhCCChH-HHHHHHHHhHhcCceEE
Q 015984 315 YTNISFEELGTLLGIAPQ-KAEKIASRMIFEDRMRG 349 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~-~~E~~ls~mI~~grl~g 349 (397)
-.-.+-..||+.||+++. .|-..|..|-.+|.+..
T Consensus 23 ~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~~ 58 (79)
T 1xmk_A 23 VSDSSALNLAKNIGLTKARDINAVLIDMERQGDVYR 58 (79)
T ss_dssp TCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEEE
T ss_pred cCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEEe
Confidence 356789999999999999 99999999999999973
No 364
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=30.05 E-value=68 Score=23.58 Aligned_cols=28 Identities=14% Similarity=0.376 Sum_probs=25.3
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHh
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIF 343 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~ 343 (397)
...|+.+||+.+|+|+.-|...+.+.+.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998887763
No 365
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=29.92 E-value=52 Score=31.44 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=35.9
Q ss_pred HHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEE
Q 015984 308 LLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRG 349 (397)
Q Consensus 308 l~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~g 349 (397)
++.+.+ ...+|-.+||+.+|+|..-+-+.+.+|+.+|.+..
T Consensus 25 il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 25 ILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp SHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 344445 68899999999999999999999999999999954
No 366
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=29.85 E-value=89 Score=23.05 Aligned_cols=29 Identities=24% Similarity=0.272 Sum_probs=25.6
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhH
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMI 342 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI 342 (397)
+|.-.|..+||+.+|+|..-|...+.+..
T Consensus 50 ~~~g~s~~eIA~~lgis~~tV~~~l~ra~ 78 (92)
T 3hug_A 50 YYRGWSTAQIATDLGIAEGTVKSRLHYAV 78 (92)
T ss_dssp HTSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 58899999999999999999988887754
No 367
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=29.70 E-value=1e+02 Score=29.91 Aligned_cols=42 Identities=19% Similarity=0.143 Sum_probs=35.7
Q ss_pred HHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEE
Q 015984 309 LSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (397)
Q Consensus 309 ~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gk 350 (397)
+.+.+-...+|-.+||+.+|+|..-+-+.+.+|+.+|.+...
T Consensus 45 l~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 45 YKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEec
Confidence 333344678999999999999999999999999999998653
No 368
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=29.57 E-value=71 Score=26.66 Aligned_cols=40 Identities=15% Similarity=0.192 Sum_probs=32.9
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 317 ~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
.++..+||+.+|++..-+=..+.+|...|-|.-.-|..++
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 125 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDR 125 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-----
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCC
Confidence 3999999999999999999999999999999877665555
No 369
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=29.56 E-value=1.8e+02 Score=23.43 Aligned_cols=42 Identities=7% Similarity=0.041 Sum_probs=38.0
Q ss_pred ccccCHHHHHHHh-CCChHHHHHHHHHhHhcCceEEEeccCCc
Q 015984 315 YTNISFEELGTLL-GIAPQKAEKIASRMIFEDRMRGSIDQVEA 356 (397)
Q Consensus 315 Y~~Isl~~La~ll-~ls~~~~E~~ls~mI~~grl~gkIDQv~g 356 (397)
....+|.+|++.+ |+++.-+-..|.+|..+|.|.-+.+..++
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~ 79 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVP 79 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSS
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 4678999999999 99999999999999999999988877655
No 370
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=29.47 E-value=48 Score=28.78 Aligned_cols=33 Identities=9% Similarity=0.113 Sum_probs=30.9
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~ 348 (397)
-.+|-++||..+|++++-+-+.+.+|..+|.|.
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~ 217 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIE 217 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCE
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEE
Confidence 468999999999999999999999999999885
No 371
>2yin_A DOCK2, dedicator of cytokinesis protein 2; apoptosis, DOCK, DOCK guanine nucleotide exchange factors; 2.70A {Homo sapiens} PDB: 3b13_A
Probab=29.45 E-value=1.5e+02 Score=29.17 Aligned_cols=28 Identities=29% Similarity=0.203 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHh
Q 015984 93 EQVLIIREKLADLYESEQQWSKAAQMLS 120 (397)
Q Consensus 93 ~q~~~l~~~La~~~e~~~d~~~Aa~~L~ 120 (397)
+-..+.-.+||+.+.+.|+|.|||-.|.
T Consensus 32 el~i~~l~~L~~~h~~~~ny~EAa~~l~ 59 (436)
T 2yin_A 32 EMYIRYLYKLRDLHLDCDNYTEAAYTLL 59 (436)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 3344555789999999999999998884
No 372
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=29.41 E-value=1.1e+02 Score=22.54 Aligned_cols=35 Identities=17% Similarity=0.255 Sum_probs=24.7
Q ss_pred ccccCHHHHHHHhC-----------CChHHHHHHHHHhHhcCceEE
Q 015984 315 YTNISFEELGTLLG-----------IAPQKAEKIASRMIFEDRMRG 349 (397)
Q Consensus 315 Y~~Isl~~La~ll~-----------ls~~~~E~~ls~mI~~grl~g 349 (397)
+.++.++||...|. ++.++++..+.+++.+|++.+
T Consensus 20 ~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~ 65 (74)
T 1ldd_A 20 LGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKY 65 (74)
T ss_dssp HCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEEC
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 45666666555443 244788889999999999874
No 373
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=29.34 E-value=1.1e+02 Score=21.47 Aligned_cols=36 Identities=14% Similarity=0.226 Sum_probs=32.4
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEE
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gk 350 (397)
=.-+|-.++|..||+|.+++-.-+-++.++|.+.-+
T Consensus 16 ~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRKR 51 (68)
T 3i71_A 16 RQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRKR 51 (68)
T ss_dssp TTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred hccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhhh
Confidence 366888999999999999999999999999999654
No 374
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=28.74 E-value=45 Score=28.52 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=30.5
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~ 348 (397)
-.+|-++||..+|++++-+-+.+.+|-.+|.|.
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~ 209 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH 209 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE
Confidence 457889999999999999999999999999885
No 375
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=28.67 E-value=1.1e+02 Score=23.76 Aligned_cols=47 Identities=13% Similarity=0.092 Sum_probs=38.3
Q ss_pred hcccc-CHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECC
Q 015984 314 LYTNI-SFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFED 362 (397)
Q Consensus 314 ~Y~~I-sl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~ 362 (397)
+=..+ +...||+.||+|..-|-+-+..+..+|.|..+ +..|+..-..
T Consensus 29 ~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~--~~~G~~V~~~ 76 (113)
T 3tqn_A 29 EGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR--RGLGMLVKAG 76 (113)
T ss_dssp TTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECTT
T ss_pred CCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEEEeCC
Confidence 34677 89999999999999999999999999998654 5667655443
No 376
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=28.56 E-value=93 Score=22.31 Aligned_cols=44 Identities=14% Similarity=0.047 Sum_probs=36.0
Q ss_pred cccCHHHHHHHh-----CCChHHHHHHHHHhHhcCceEEEeccCCcEEEE
Q 015984 316 TNISFEELGTLL-----GIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360 (397)
Q Consensus 316 ~~Isl~~La~ll-----~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f 360 (397)
.-++.++|++.+ +++..-|-..|..|...|.+.- +.-.+|...|
T Consensus 32 ~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~-~~~~~~~~~y 80 (83)
T 2fu4_A 32 HHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR-HNFEGGKSVF 80 (83)
T ss_dssp SSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE-EECGGGCEEE
T ss_pred CCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE-EeeCCCceEe
Confidence 368999999999 9999999999999999999974 4444444444
No 377
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=28.27 E-value=20 Score=27.01 Aligned_cols=22 Identities=18% Similarity=0.279 Sum_probs=19.6
Q ss_pred hHHHHHHHHHhHhcCceEEEec
Q 015984 331 PQKAEKIASRMIFEDRMRGSID 352 (397)
Q Consensus 331 ~~~~E~~ls~mI~~grl~gkID 352 (397)
.+.||..+.+|...|+|.++||
T Consensus 34 A~~VE~~Li~lAq~Gqi~~ki~ 55 (81)
T 2fh0_A 34 AQAVETYLKKLIATNNVTHKIT 55 (81)
T ss_dssp HHHHHHHHHHHHHHTCCSCCBC
T ss_pred HHHHHHHHHHHHHcCCCCCCcC
Confidence 3589999999999999999985
No 378
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=28.23 E-value=56 Score=24.97 Aligned_cols=35 Identities=17% Similarity=0.105 Sum_probs=32.3
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gk 350 (397)
..++..+||+.+|+|..-+-+.+..|..+|-+...
T Consensus 32 ~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~ 66 (110)
T 1q1h_A 32 TEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYR 66 (110)
T ss_dssp SCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 36899999999999999999999999999999765
No 379
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=28.12 E-value=1.9e+02 Score=25.65 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=36.9
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f 360 (397)
..||...++..+|+++.-+...|-.|+.+|.+.-= |++.|+-+|
T Consensus 167 g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D-~~~eg~~y~ 210 (218)
T 3cuq_B 167 GSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRD-DSVEGLRFY 210 (218)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-ESSSCEEEE
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEE-CCCCceEEe
Confidence 57999999999999999999999999999987432 477785444
No 380
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=27.77 E-value=3.8e+02 Score=25.01 Aligned_cols=150 Identities=15% Similarity=0.033 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHhC--CCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHh
Q 015984 31 SNDIVQAKKFIDHMLSDDVPLVVSRQLLQTFAQELG--RLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYES 108 (397)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~~~~~sr~~~~~~~~~l~--~l~~~~~~~~~~~~l~~~~~~~~~~e~q~~~l~~~La~~~e~ 108 (397)
+++..++...+..+-.+++...++.-+...---.+. .+..=.....+...++++-+---.+.. ......|+.+|..
T Consensus 134 ~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~--GsA~~~LG~lY~~ 211 (301)
T 3u64_A 134 SGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQE--GAVWNVLTKFYAA 211 (301)
T ss_dssp SSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHH--HHHHHHHHHHHHH
T ss_pred hcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCccc--CHHHHHHHHHHHh
Confidence 344455666666666667777777755543322222 222111222233333332111112222 2466788999988
Q ss_pred -----hhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhh-cCChHHHHHHHHHhcccccCc-chHHHHHHHHH
Q 015984 109 -----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE-DDDAVNAEAFINKASFLVSSS-QQEVLNLQYKV 181 (397)
Q Consensus 109 -----~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~-~~d~~~A~~~l~ka~~~~~~~-~~~~l~~~~~~ 181 (397)
-|+.++|...+..-..= ++...++.+.--++.+.. .+|+..|..+++++...-... +++.+-....-
T Consensus 212 vPp~~gGd~ekA~~~ferAL~L------nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~q 285 (301)
T 3u64_A 212 APESFGGGMEKAHTAFEHLTRY------CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVILSQ 285 (301)
T ss_dssp SCTTTTCCHHHHHHHHHHHHHH------CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHh------CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHHHH
Confidence 49999999999885432 232335566666777766 599999999999987654432 45566666666
Q ss_pred HHHHHHH
Q 015984 182 CYARILD 188 (397)
Q Consensus 182 ~~~~~~~ 188 (397)
-.++.+.
T Consensus 286 ~eA~~LL 292 (301)
T 3u64_A 286 KRARWLK 292 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665443
No 381
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=27.34 E-value=1.1e+02 Score=22.19 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=26.2
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhHh
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMIF 343 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~ 343 (397)
++...+.++||+.+|++..-|...+.+...
T Consensus 33 ~~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 33 IAQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp HTTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 368899999999999999999998887654
No 382
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=26.93 E-value=96 Score=22.86 Aligned_cols=35 Identities=17% Similarity=0.125 Sum_probs=31.7
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gk 350 (397)
...|...||..||++-..|-+.|-+|-..|.+...
T Consensus 28 ~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 28 DYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp CEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred cchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 34888999999999999999999999999998764
No 383
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=26.46 E-value=4.7e+02 Score=25.70 Aligned_cols=138 Identities=12% Similarity=0.047 Sum_probs=83.7
Q ss_pred hhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccccCcchHHHHHHHHHHHHHHH
Q 015984 108 SEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVSSSQQEVLNLQYKVCYARIL 187 (397)
Q Consensus 108 ~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~~~~~~~l~~~~~~~~~~~~ 187 (397)
..+++++|.+++.++... +..++ ...|-..++.|...+++..|..+++.....-.. ++ ..-|......+
T Consensus 82 ~~~~l~~A~~lf~~M~~~---G~~Pd---~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~-Pd----~~tyn~lI~~~ 150 (501)
T 4g26_A 82 PNPGLSRGFDIFKQMIVD---KVVPN---EATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQ-PR----LRSYGPALFGF 150 (501)
T ss_dssp CCHHHHHHHHHHHHHHHT---TCCCC---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCC-CC----HHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHHHHh---CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-Cc----cceehHHHHHH
Confidence 356788899999987653 22222 236777889999999999999999886543221 12 23456666777
Q ss_pred HHHHhHHHHHHHHHHHHHhhhhhcCCCCCCHHHHHHHHHHHHHHHHhcCCCC--cchHHHHhhhhchhhccccchHHHHH
Q 015984 188 DLKRKFLEAALRYYDISQIQKRQIGDETIDEEALEQALSAAVTCTILAAAGP--QRSRVLATLYKDERCSKLKIYPILQK 265 (397)
Q Consensus 188 ~~~r~f~~Aa~~y~e~~~~~~~~~~~~~~~~~~~~~~L~~av~~~ILa~~~~--~rs~ll~~l~~d~~~~~l~~~~~L~k 265 (397)
...+++.+|...|.+.... ...-+..- |..+-..++..|. +-.+++..+-..-..+....|..|..
T Consensus 151 ~~~g~~~~A~~l~~~M~~~------G~~Pd~~t------y~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~ 218 (501)
T 4g26_A 151 CRKGDADKAYEVDAHMVES------EVVPEEPE------LAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEE 218 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHT------TCCCCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhc------CCCCCHHH------HHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 8899999999999888763 22223221 2222222223332 33344555444333344456777887
Q ss_pred HHH
Q 015984 266 VYL 268 (397)
Q Consensus 266 ~f~ 268 (397)
.|.
T Consensus 219 ~F~ 221 (501)
T 4g26_A 219 WFK 221 (501)
T ss_dssp HHH
T ss_pred HHh
Confidence 774
No 384
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=26.35 E-value=62 Score=28.71 Aligned_cols=32 Identities=16% Similarity=0.342 Sum_probs=30.3
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHHhHhcCceE
Q 015984 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (397)
Q Consensus 317 ~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~ 348 (397)
.+|-++||..+|++++-+-+.+.+|..+|.|.
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~ 248 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGRILKMLEDQNLIS 248 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 68899999999999999999999999999886
No 385
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=26.20 E-value=29 Score=34.65 Aligned_cols=95 Identities=11% Similarity=0.020 Sum_probs=23.4
Q ss_pred HHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccc--------cCcchH
Q 015984 102 LADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV--------SSSQQE 173 (397)
Q Consensus 102 La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~--------~~~~~~ 173 (397)
++..++..|+|++|.+.+...+... .+ ..+.-..+-+|-..|++..++.+++.-+... +..+.+
T Consensus 67 V~~~ae~~g~~EeAi~yl~~ark~~-----~~---~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~y 138 (449)
T 1b89_A 67 VVQAANTSGNWEELVKYLQMARKKA-----RE---SYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMY 138 (449)
T ss_dssp --------------------------------------------------CHHHHTTTTTCC----------------CT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhC-----cc---chhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCH
Confidence 3445667888888888776544211 00 1222233334444455555554443310000 000000
Q ss_pred H------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 015984 174 V------LNLQYKVCYARILDLKRKFLEAALRYYDIS 204 (397)
Q Consensus 174 ~------l~~~~~~~~~~~~~~~r~f~~Aa~~y~e~~ 204 (397)
+ -+...+.+.|..+..-++|.+|-..|..+.
T Consensus 139 eeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~ 175 (449)
T 1b89_A 139 DAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKAN 175 (449)
T ss_dssp TTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcC
Confidence 0 011245566666677777777777776663
No 386
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=25.82 E-value=2.2e+02 Score=22.14 Aligned_cols=61 Identities=23% Similarity=0.159 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHh----hhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhh----cCChHHHHHHHHHhccc
Q 015984 97 IIREKLADLYES----EQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLE----DDDAVNAEAFINKASFL 166 (397)
Q Consensus 97 ~l~~~La~~~e~----~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~----~~d~~~A~~~l~ka~~~ 166 (397)
.-...|+.+|.. .+|+.+|.+.+..-- +. +. .+-+.....+|.. .+|+.+|..+++++...
T Consensus 58 ~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~~--g~------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 58 NGCRFLGDFYENGKYVKKDLRKAAQYYSKAC-GL--ND------QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH-HT--TC------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHHH-cC--CC------HHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 445789999998 899999999988742 22 11 3456677888888 89999999999998765
No 387
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=25.61 E-value=1.2e+02 Score=21.24 Aligned_cols=30 Identities=13% Similarity=0.240 Sum_probs=26.2
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhHh
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMIF 343 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~ 343 (397)
++...+..++|+.+|+|+.-|...+.+...
T Consensus 28 ~~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 28 VVAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp HTTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 378889999999999999999988887664
No 388
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=25.48 E-value=8.4e+02 Score=28.27 Aligned_cols=24 Identities=13% Similarity=0.238 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhcHHHHHHHHhhc
Q 015984 99 REKLADLYESEQQWSKAAQMLSGI 122 (397)
Q Consensus 99 ~~~La~~~e~~~d~~~Aa~~L~~i 122 (397)
-..+|.+++..|.++||+.++...
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHc
Confidence 344788888888888888887773
No 389
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=25.41 E-value=93 Score=23.91 Aligned_cols=47 Identities=4% Similarity=-0.036 Sum_probs=36.7
Q ss_pred hcccc-CHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEE
Q 015984 314 LYTNI-SFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360 (397)
Q Consensus 314 ~Y~~I-sl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f 360 (397)
+=..+ +..+||+.||+|..-|-+-+..+..+|.|...=.-..|+...
T Consensus 39 ~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~ 86 (102)
T 2b0l_A 39 GNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIK 86 (102)
T ss_dssp TTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEE
T ss_pred CCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEe
Confidence 34566 999999999999999999999999999987643113465443
No 390
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=25.30 E-value=95 Score=24.74 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=26.3
Q ss_pred hhccccCHHHHHHHhCCChHHHHHHHHHhH
Q 015984 313 KLYTNISFEELGTLLGIAPQKAEKIASRMI 342 (397)
Q Consensus 313 ~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI 342 (397)
.++...|..+||+.+|+|+.-|...+.+..
T Consensus 120 ~~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 120 YLIRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HHTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 368999999999999999999988887754
No 391
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=25.27 E-value=60 Score=26.46 Aligned_cols=27 Identities=22% Similarity=0.418 Sum_probs=24.3
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHh
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRM 341 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~m 341 (397)
|=+.+++++|..+|++.+++|..+...
T Consensus 37 YL~~~l~eia~~l~~~~~eve~vL~~i 63 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCSVEELEKVRQKV 63 (130)
T ss_dssp SBSSCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 888999999999999999999887643
No 392
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=25.18 E-value=2.2e+02 Score=25.54 Aligned_cols=59 Identities=5% Similarity=0.033 Sum_probs=38.7
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCCcEEEECCc-------chHHHHHHHHHHH
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFEDD-------TEELQQWDQQIVG 376 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~~~-------~~~l~~w~~~I~~ 376 (397)
..+++.+||+.+|+|..-+-+.+.+|...|-+... +..+.+..... .....-|.+....
T Consensus 165 ~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~~G~~l~~~~~~~~~w~~aq~~ 230 (244)
T 2wte_A 165 KGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELNELGLNVIKLNKSVIESSKSSEE 230 (244)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEECHHHHHHHHHTC-----------
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEECHHHHHHHHHHhcccccHHHHHH
Confidence 57999999999999999999999999999999875 33455555431 1334456655443
No 393
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=25.14 E-value=2.7e+02 Score=22.78 Aligned_cols=37 Identities=5% Similarity=-0.017 Sum_probs=34.0
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEec
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkID 352 (397)
...++.+||+.+|++..-+-..+..|...|.|..+-|
T Consensus 70 ~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~ 106 (151)
T 3f6v_A 70 GEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKD 106 (151)
T ss_dssp CCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEec
Confidence 5689999999999999999999999999999988754
No 394
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=24.99 E-value=1.3e+02 Score=20.58 Aligned_cols=28 Identities=14% Similarity=0.153 Sum_probs=24.5
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhH
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMI 342 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI 342 (397)
+...+..++|+.+|+|+.-|...+.+..
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~ 51 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAM 51 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5777999999999999999998887755
No 395
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=24.61 E-value=2.3e+02 Score=21.51 Aligned_cols=35 Identities=9% Similarity=0.129 Sum_probs=31.9
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gk 350 (397)
..+++.++|+.+|++..-+-..+.+|...|.+.-.
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 37999999999999999999999999999988654
No 396
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=24.48 E-value=79 Score=28.27 Aligned_cols=40 Identities=13% Similarity=0.074 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHh
Q 015984 301 RAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIF 343 (397)
Q Consensus 301 ~~v~EhNl~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~ 343 (397)
++++|--|.+..+| ++++.|++.++++.++++..+..+..
T Consensus 17 ~~~iEAlLf~a~ep---vs~~~La~~l~~~~~~v~~~l~~L~~ 56 (219)
T 2z99_A 17 KRVLEALLLVIDTP---VTADALAAATEQPVYRVAAKLQLMAD 56 (219)
T ss_dssp HHHHHHHHHHCSSC---BCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC---CCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56778777776666 99999999999999999999988875
No 397
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=24.37 E-value=2.7e+02 Score=22.19 Aligned_cols=35 Identities=11% Similarity=0.154 Sum_probs=31.6
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gk 350 (397)
..++..+||+.+|++..-+-..+.+|...|.+.-+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~ 87 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMI 87 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEE
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEe
Confidence 56899999999999999999999999999987654
No 398
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=24.32 E-value=57 Score=26.12 Aligned_cols=38 Identities=11% Similarity=0.121 Sum_probs=32.0
Q ss_pred cCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEeccCC
Q 015984 318 ISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSIDQVE 355 (397)
Q Consensus 318 Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkIDQv~ 355 (397)
+|.+.||+.+|+++..+-..+.+++..|-|.=+-|..+
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~~~ 89 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHTDE 89 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC----
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEECC
Confidence 89999999999999999999999999999876555433
No 399
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=24.21 E-value=85 Score=26.62 Aligned_cols=40 Identities=10% Similarity=0.243 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHhhccccCHHHHHHHhC--CChHHHHHHHHHhHh
Q 015984 301 RAMIEHNLLSASKLYTNISFEELGTLLG--IAPQKAEKIASRMIF 343 (397)
Q Consensus 301 ~~v~EhNl~~is~~Y~~Isl~~La~ll~--ls~~~~E~~ls~mI~ 343 (397)
++++|--|.+..+| +++++|++.++ +++++++..+..+..
T Consensus 9 ~~~iEAlLf~~~~p---vs~~~La~~~~~~~~~~~v~~~l~~L~~ 50 (162)
T 1t6s_A 9 LRSLEALIFSSEEP---VNLQTLSQITAHKFTPSELQEAVDELNR 50 (162)
T ss_dssp HHHHHHHHHHCSSC---BCHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCC---CCHHHHHHHhCcCCCHHHHHHHHHHHHH
Confidence 35667666555444 99999999999 999999999988875
No 400
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=24.13 E-value=1.4e+02 Score=28.84 Aligned_cols=92 Identities=13% Similarity=0.100 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhh---cHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhc----CChHHHHHHHHHhcccccCc
Q 015984 98 IREKLADLYESEQ---QWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLED----DDAVNAEAFINKASFLVSSS 170 (397)
Q Consensus 98 l~~~La~~~e~~~---d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~----~d~~~A~~~l~ka~~~~~~~ 170 (397)
....|+.+|...| ++.+|.+.+...- +. +..+ ...+.....+|... +|+.+|..++.++. .
T Consensus 178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa-~~--g~~~----a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~-- 245 (452)
T 3e4b_A 178 CYVELATVYQKKQQPEQQAELLKQMEAGV-SR--GTVT----AQRVDSVARVLGDATLGTPDEKTAQALLEKIA---P-- 245 (452)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HT--TCSC----HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---G--
T ss_pred HHHHHHHHHHHcCCcccHHHHHHHHHHHH-HC--CCHH----HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---C--
Confidence 3467888998888 8999988887743 22 2211 12234445555544 79999999999987 1
Q ss_pred chHHHHHHHHHHHHHH-H--HHHHhHHHHHHHHHHHHH
Q 015984 171 QQEVLNLQYKVCYARI-L--DLKRKFLEAALRYYDISQ 205 (397)
Q Consensus 171 ~~~~l~~~~~~~~~~~-~--~~~r~f~~Aa~~y~e~~~ 205 (397)
+++.-... .|.+ + ...+|+.+|..+|..+..
T Consensus 246 g~~~a~~~----Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 246 GYPASWVS----LAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp GSTHHHHH----HHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred CCHHHHHH----HHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 23322211 2222 2 347899999998888775
No 401
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=23.78 E-value=1.3e+02 Score=22.42 Aligned_cols=29 Identities=10% Similarity=0.222 Sum_probs=26.0
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHh
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIF 343 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~ 343 (397)
+.-.+..+||+.+|+|+.-|...+.+...
T Consensus 40 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 40 SEGLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 68889999999999999999999888764
No 402
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=23.76 E-value=2.4e+02 Score=21.69 Aligned_cols=44 Identities=23% Similarity=0.339 Sum_probs=26.6
Q ss_pred hCCCChHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHhh
Q 015984 65 LGRLEPETQKEIANYTLAQIQPRVVSFEEQVLIIREKLADLYESE 109 (397)
Q Consensus 65 l~~l~~~~~~~~~~~~l~~~~~~~~~~e~q~~~l~~~La~~~e~~ 109 (397)
+..||++.++.-+..-|..++...--...++.-+ .++-..|.+.
T Consensus 8 ~s~LPpeqRkkkL~~Ki~el~~ei~ke~~~regl-~Km~~vY~~n 51 (98)
T 2ke4_A 8 FSHLPPEQQRKRLQQQLEERSRELQKEVDQREAL-KKMKDVYEKT 51 (98)
T ss_dssp SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTHH-HHHHHHHHHC
T ss_pred hccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHcC
Confidence 4578999998888777777654433333333333 4455566654
No 403
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=23.71 E-value=83 Score=24.20 Aligned_cols=28 Identities=18% Similarity=0.462 Sum_probs=24.4
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHh
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIF 343 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~ 343 (397)
...|+++||+.+|+|..-|...+.+.+.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6899999999999999999888776653
No 404
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=23.36 E-value=1.1e+02 Score=21.45 Aligned_cols=33 Identities=12% Similarity=0.230 Sum_probs=29.0
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceE
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~ 348 (397)
--+.++..++-+|++.++|-..|.++=..|.|.
T Consensus 24 GildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 24 GFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp SEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred CEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 346788899999999999999999999988774
No 405
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=23.10 E-value=1e+02 Score=22.64 Aligned_cols=29 Identities=14% Similarity=0.117 Sum_probs=25.9
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHhHh
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRMIF 343 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~mI~ 343 (397)
+.-.+..+||+.+|+|+.-|...+.+...
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 67889999999999999999999887764
No 406
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=22.94 E-value=58 Score=20.94 Aligned_cols=25 Identities=4% Similarity=0.074 Sum_probs=20.7
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHHh
Q 015984 317 NISFEELGTLLGIAPQKAEKIASRM 341 (397)
Q Consensus 317 ~Isl~~La~ll~ls~~~~E~~ls~m 341 (397)
.+++..+|..+|+++.++-..+.++
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHc
Confidence 4678899999999999887777654
No 407
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=22.66 E-value=3.6e+02 Score=22.99 Aligned_cols=81 Identities=10% Similarity=-0.032 Sum_probs=53.0
Q ss_pred HhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhcccc-----c-CcchHHHHHHHH
Q 015984 107 ESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLV-----S-SSQQEVLNLQYK 180 (397)
Q Consensus 107 e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~-----~-~~~~~~l~~~~~ 180 (397)
.+.|+++.|.++...+.-+ ..|-+.....|..+|+.-|+..+.++.+.- + ..++.+ -.
T Consensus 16 L~lg~l~~A~e~a~~l~~~------------~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e----~L 79 (177)
T 3mkq_B 16 LEYGNLDAALDEAKKLNDS------------ITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVN----KL 79 (177)
T ss_dssp HHTTCHHHHHHHHHHHCCH------------HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHH----HH
T ss_pred HhcCCHHHHHHHHHHhCCH------------HHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHH----HH
Confidence 4678999999887764321 367788888899999999999888876531 1 111111 11
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q 015984 181 VCYARILDLKRKFLEAALRYYDI 203 (397)
Q Consensus 181 ~~~~~~~~~~r~f~~Aa~~y~e~ 203 (397)
.-++++-..+++|.-|...|+.+
T Consensus 80 ~kla~iA~~~g~~n~af~~~l~l 102 (177)
T 3mkq_B 80 SKMQNIAQTREDFGSMLLNTFYN 102 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCccHHHHHHHHHHc
Confidence 24566667777777766666543
No 408
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=22.62 E-value=1.3e+02 Score=23.61 Aligned_cols=44 Identities=16% Similarity=0.046 Sum_probs=37.5
Q ss_pred ccccCHHHHHHHh--CCChHHHHHHHHHhHhcCceEEEeccCCcEEEEC
Q 015984 315 YTNISFEELGTLL--GIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHFE 361 (397)
Q Consensus 315 Y~~Isl~~La~ll--~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f~ 361 (397)
...+|..+||+.+ |+|+..|-+.+.++...|.|... ..|+...+
T Consensus 25 ~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~---~rg~Y~LT 70 (111)
T 3b73_A 25 EGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL---ANGVYVIT 70 (111)
T ss_dssp HSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC---STTCEEEC
T ss_pred cCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec---CCceEEEC
Confidence 3589999999999 99999999999999999999884 55544444
No 409
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=22.61 E-value=1.1e+02 Score=24.35 Aligned_cols=33 Identities=3% Similarity=0.225 Sum_probs=30.6
Q ss_pred hccccCHHHHHHHhCCChHHHHHHHHHhHhcCc
Q 015984 314 LYTNISFEELGTLLGIAPQKAEKIASRMIFEDR 346 (397)
Q Consensus 314 ~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~gr 346 (397)
+=...++++||..-|+++..++..+++++..|.
T Consensus 29 ~~~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~ 61 (122)
T 3iuo_A 29 IDRKVALDDIAVSHGLDFPELLSEVETIVYSGT 61 (122)
T ss_dssp HHTTCCHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred HHcCCCHHHHHHHcCCCHHHHHHHHHHHHHcCC
Confidence 347889999999999999999999999999995
No 410
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=22.52 E-value=1.4e+02 Score=25.88 Aligned_cols=63 Identities=10% Similarity=-0.011 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHH
Q 015984 93 EQVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAE 157 (397)
Q Consensus 93 ~q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~ 157 (397)
.|+++....+++++..+++|.+|.+-|..--..+.......+..+-.||--++|.+ |+.+...
T Consensus 11 ~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~--G~iP~~~ 73 (203)
T 3t5x_A 11 AQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLL--GHMPTVE 73 (203)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHT--TCEECHH
T ss_pred HHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHc--CCCCCHH
Confidence 47778899999999999999999998887544432111122334555666666665 4455433
No 411
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=22.30 E-value=2.1e+02 Score=24.32 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=30.8
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEE
Q 015984 317 NISFEELGTLLGIAPQKAEKIASRMIFEDRMRGS 350 (397)
Q Consensus 317 ~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gk 350 (397)
-.|+.+||+.+|++..-+-..+.+|-..|-|...
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 4899999999999988999999999999998653
No 412
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=21.89 E-value=1.4e+02 Score=23.23 Aligned_cols=37 Identities=11% Similarity=-0.002 Sum_probs=33.0
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEec
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkID 352 (397)
...++.+||+.+|+|..-+-..+..+...|.+..+-|
T Consensus 33 ~~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 69 (118)
T 2jsc_A 33 GVCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYE 69 (118)
T ss_dssp TCCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE
Confidence 3478899999999999999999999999999987654
No 413
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=21.45 E-value=2e+02 Score=21.31 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=38.6
Q ss_pred CCCc--hhhHHHHHHHHHHHHHHhhccccCHHHHHHHhCCChHHHHHHHHHhHhcCceE
Q 015984 292 LPDN--FTVLDRAMIEHNLLSASKLYTNISFEELGTLLGIAPQKAEKIASRMIFEDRMR 348 (397)
Q Consensus 292 ~~d~--~~~L~~~v~EhNl~~is~~Y~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~ 348 (397)
+.|+ .+.+.+.|++ ++...=+=++-..||+.+|++..+|.+.+-+|=.+|+|.
T Consensus 11 ~~~~~~~~d~eekVLe----~LkeaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 11 MADPGREGHLEQRILQ----VLTEAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp SCCSCHHHHHHHHHHH----HHHHHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccCCcccchHHHHHHH----HHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 4454 2455555543 233334567788999999999999999999999999864
No 414
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=21.34 E-value=2.2e+02 Score=23.97 Aligned_cols=33 Identities=12% Similarity=-0.010 Sum_probs=30.4
Q ss_pred ccCHHHHHHHhCCChHHHHHHHHHhHhcCc-eEE
Q 015984 317 NISFEELGTLLGIAPQKAEKIASRMIFEDR-MRG 349 (397)
Q Consensus 317 ~Isl~~La~ll~ls~~~~E~~ls~mI~~gr-l~g 349 (397)
.+|..+||+.||+|..-+-+.+..|-..|. |.+
T Consensus 36 ~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 36 PVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp CBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 499999999999999999999999999998 764
No 415
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=21.25 E-value=1.9e+02 Score=19.23 Aligned_cols=41 Identities=7% Similarity=0.046 Sum_probs=32.3
Q ss_pred ccccCHHHHHHHh-----CCChHHHHHHHHHhHhcCceEEEeccCCcEEEE
Q 015984 315 YTNISFEELGTLL-----GIAPQKAEKIASRMIFEDRMRGSIDQVEAVIHF 360 (397)
Q Consensus 315 Y~~Isl~~La~ll-----~ls~~~~E~~ls~mI~~grl~gkIDQv~giV~f 360 (397)
-..+|.++|++.| ++|..-+-..+. ..|.+ ++...+|...|
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~---~lg~v--~~~~~~~~~~Y 62 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIK---ELHLV--KVPTNNGSYKY 62 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH---HHTCE--EEEETTTEEEE
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH---HcCCE--EEecCCCceee
Confidence 3579999999999 999998888888 44666 66666776665
No 416
>3f2g_A Alkylmercury lyase; MERB, organomercurial lyase, mercury resistance, mercuric resistance, plasmid; 1.78A {Escherichia coli} PDB: 3f2h_A 3fn8_A 1s6l_A 3f0o_A 3f0p_A 3f2f_A
Probab=21.22 E-value=85 Score=28.10 Aligned_cols=27 Identities=11% Similarity=0.203 Sum_probs=24.6
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhH
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMI 342 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI 342 (397)
+-++.++||..+|++.+++...|.+|=
T Consensus 35 rpv~~~~LA~~~g~~~~~v~~~L~~l~ 61 (220)
T 3f2g_A 35 RPVSRTTLAGILDWPAERVAAVLEQAT 61 (220)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHhCC
Confidence 667888999999999999999999984
No 417
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=21.08 E-value=71 Score=26.61 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=22.6
Q ss_pred ccccCHHHHHHHhCCChHHHHHHHHHh
Q 015984 315 YTNISFEELGTLLGIAPQKAEKIASRM 341 (397)
Q Consensus 315 Y~~Isl~~La~ll~ls~~~~E~~ls~m 341 (397)
++-=|+++||+.+|++++.+...+.+.
T Consensus 93 ~kadTleeLA~~~gid~~~L~~TV~~y 119 (160)
T 2lfc_A 93 FVKGSLESAAEQAGIVVDELVQTVKNY 119 (160)
T ss_dssp EECSSHHHHHHHHTCCHHHHHHHHHHH
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 445589999999999999988888654
No 418
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=20.79 E-value=5.6e+02 Score=24.53 Aligned_cols=74 Identities=9% Similarity=-0.132 Sum_probs=53.6
Q ss_pred HHHHHHHHHHHHHHhhhcHHHHHHHHhhchhccCCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhccccc
Q 015984 94 QVLIIREKLADLYESEQQWSKAAQMLSGIDLDSGMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFLVS 168 (397)
Q Consensus 94 q~~~l~~~La~~~e~~~d~~~Aa~~L~~i~~et~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~~~ 168 (397)
+...+...+..++...+||..|...+..+..-. ...-+...+..+.....++++..++|..|-.++-.+.....
T Consensus 166 ~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~-~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~ 239 (429)
T 4b4t_R 166 AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMI-EKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFT 239 (429)
T ss_dssp SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-TTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-hcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCC
Confidence 445666777788888999999999998875322 12224445667777888999999999999887776544443
No 419
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=20.53 E-value=2.3e+02 Score=21.02 Aligned_cols=36 Identities=6% Similarity=0.126 Sum_probs=32.0
Q ss_pred cccCHHHHHHHhCCChHHHHHHHHHhHhcCceEEEec
Q 015984 316 TNISFEELGTLLGIAPQKAEKIASRMIFEDRMRGSID 352 (397)
Q Consensus 316 ~~Isl~~La~ll~ls~~~~E~~ls~mI~~grl~gkID 352 (397)
...++.+||+.+|+|..-+-..+..+-.. -+..+-+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQ 75 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEe
Confidence 56899999999999999999999999999 8877654
No 420
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=20.50 E-value=3.3e+02 Score=24.00 Aligned_cols=31 Identities=13% Similarity=0.112 Sum_probs=16.3
Q ss_pred hhhHHHHHHHHHHhCCCChHH--HHHHHHHHHH
Q 015984 52 VVSRQLLQTFAQELGRLEPET--QKEIANYTLA 82 (397)
Q Consensus 52 ~~sr~~~~~~~~~l~~l~~~~--~~~~~~~~l~ 82 (397)
--.|-++..++..+..++..+ .+-+|+++.+
T Consensus 42 rq~rdi~eall~~~~~~~a~~~k~i~icQfL~R 74 (211)
T 3bqo_A 42 RRTRNSAEAIIHGLSSLTACQLRTIYICQFLTR 74 (211)
T ss_dssp HHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccchHHHHHHHHH
Confidence 345566666666666666442 2335554433
No 421
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=20.03 E-value=1.5e+02 Score=29.49 Aligned_cols=68 Identities=16% Similarity=0.127 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhhcHHHHHHHHhhchhcc---CCCCCchhHHHHHHHHHHHHHhhcCChHHHHHHHHHhccc
Q 015984 99 REKLADLYESEQQWSKAAQMLSGIDLDS---GMRVIDDTFRLSKCVQIARLYLEDDDAVNAEAFINKASFL 166 (397)
Q Consensus 99 ~~~La~~~e~~~d~~~Aa~~L~~i~~et---~~~~~~~~~kle~~L~i~Rl~L~~~d~~~A~~~l~ka~~~ 166 (397)
--.|-++|.+.|+..-+..++..+.--+ .....+..+.+.+.--.-|+++..+||..|...+..|-..
T Consensus 179 ~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~ 249 (455)
T 3t5v_B 179 VNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEYQLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQS 249 (455)
T ss_dssp HHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhCCccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHh
Confidence 3456789999999999999998864321 0223456689999999999999999999999999998776
Done!