BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 015985
(397 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VA7|A Chain A, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|B Chain B, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|C Chain C, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
pdb|1VA7|D Chain D, Yeast Myo3 Sh3 Domain, Triclinic Crystal Form
Length = 70
Score = 31.6 bits (70), Expect = 0.83, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 207 LNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPYISPYEDAFHFAP 255
L LKKG + S + P G+ L K + E W Y++PY+D + P
Sbjct: 21 LPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVP 69
>pdb|2BTT|A Chain A, Nmr Structure Of Myo3-Sh3 Domain From Myosin-Type I From
S. Cerevisiae
Length = 69
Score = 31.6 bits (70), Expect = 0.89, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 207 LNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPYISPYEDAFHFAP 255
L LKKG + S + P G+ L K + E W Y++PY+D + P
Sbjct: 20 LPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVP 68
>pdb|1RUW|A Chain A, Crystal Structure Of The Sh3 Domain From S. Cerevisiae
Myo3
Length = 69
Score = 31.2 bits (69), Expect = 0.95, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 25/49 (51%)
Query: 207 LNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPYISPYEDAFHFAP 255
L LKKG + S + P G+ L K + E W Y++PY+D + P
Sbjct: 20 LPLKKGDIVFISRDEPSGWSLAKLLDGSKEGWVPTAYMTPYKDTRNTVP 68
>pdb|3IV6|A Chain A, Crystal Structure Of Putative Zn-Dependent Alcohol
Dehydrogenases From Rhodobacter Sphaeroides.
pdb|3IV6|B Chain B, Crystal Structure Of Putative Zn-Dependent Alcohol
Dehydrogenases From Rhodobacter Sphaeroides.
pdb|3IV6|C Chain C, Crystal Structure Of Putative Zn-Dependent Alcohol
Dehydrogenases From Rhodobacter Sphaeroides.
pdb|3IV6|D Chain D, Crystal Structure Of Putative Zn-Dependent Alcohol
Dehydrogenases From Rhodobacter Sphaeroides
Length = 261
Score = 30.8 bits (68), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 5/74 (6%)
Query: 194 VSEMERRSCGGDLLNLKKGMCLRFSMNFPRGF-DLEKRVMNWVEQWQDLP-YISPYEDAF 251
+E RR+C G L + G +R S+ GF D++ +++ + EQ L + P + F
Sbjct: 124 TTEEARRACLGXLSLVGSGT-VRASVKL--GFYDIDLKLIEYGEQSGTLAKFFDPSDKTF 180
Query: 252 HFAPSGDLAEKWAV 265
HF +GD+ ++ V
Sbjct: 181 HFREAGDVLDRALV 194
>pdb|2PK0|A Chain A, Structure Of The S. Agalactiae Serine/threonine
Phosphatase At 2.65 Resolution
pdb|2PK0|B Chain B, Structure Of The S. Agalactiae Serine/threonine
Phosphatase At 2.65 Resolution
pdb|2PK0|C Chain C, Structure Of The S. Agalactiae Serine/threonine
Phosphatase At 2.65 Resolution
pdb|2PK0|D Chain D, Structure Of The S. Agalactiae Serine/threonine
Phosphatase At 2.65 Resolution
Length = 250
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 7/45 (15%)
Query: 258 DLAEKWAVAVLHELL----WLLVSKKTERDNLFCLG---DYLGFG 295
DL WA EL W+LVS +TE ++ LG DY G G
Sbjct: 59 DLGSDWAETDFSELSEIRDWMLVSIETENRKIYELGQSDDYKGMG 103
>pdb|2H2P|C Chain C, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
pdb|2H2P|E Chain E, Crystal Structure Of Clc-Ec1 In Complex With Fab Fragment
In Secn-
pdb|2H2S|C Chain C, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2H2S|E Chain E, Crystal Structure Of E148a Mutant Of Clc-Ec1 In Secn-
pdb|2HLF|C Chain C, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HLF|E Chain E, Structure Of The Escherichis Coli Clc Chloride Channel
Y445e Mutant And Fab Complex
pdb|2HT2|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT2|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445h Mutant And Fab Complex
pdb|2HT3|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT3|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445l Mutant And Fab Complex
pdb|2HT4|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HT4|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445w Mutant And Fab Complex
pdb|2HTK|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTK|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445a Mutant And Fab Complex
pdb|2HTL|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2HTL|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
Y445f Mutant And Fab Complex
pdb|2R9H|C Chain C, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|2R9H|E Chain E, Crystal Structure Of Q207c Mutant Of Clc-Ec1 In Complex
With Fab
pdb|3DET|C Chain C, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3DET|E Chain E, Structure Of The E418a, Y445a Doubly Ungated Mutant Of
E.Coli Clc_ec1, Cl-H+ ANTIPORTER
pdb|3EJY|C Chain C, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
pdb|3EJY|E Chain E, Structure Of E203h Mutant Of E.Coli Cl-H+ ANTIPORTER, CLC-
Ec1
pdb|3EJZ|C Chain C, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
pdb|3EJZ|E Chain E, Structure Of E203v Mutant E.Coli Cl-H+ EXCHANGER, CLC-Ec1
Length = 221
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 18/104 (17%)
Query: 203 GGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQ-------WQDLPYISPYEDAFHFAP 255
GG L+ + G L+ S GFD + M+WV Q W + I+P ++ P
Sbjct: 7 GGGLV--QPGGSLKLSCA-ASGFDYSRYWMSWVRQAPGKGLKW--IGEINPVSSTINYTP 61
Query: 256 SGDLAEKWAVA--VLHELLWLLVSKKTERDN--LFCLGDYLGFG 295
S L +K+ ++ + L+L +SK D +C Y G+G
Sbjct: 62 S--LKDKFIISRDNAKDTLYLQISKVRSEDTALYYCARLYYGYG 103
>pdb|1OTS|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|1OTS|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel And
Fab Complex
pdb|1OTT|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTT|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
E148a Mutant And Fab Complex
pdb|1OTU|C Chain C, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|1OTU|E Chain E, Structure Of The Escherichia Coli Clc Chloride Channel
E148q Mutant And Fab Complex
pdb|2FEC|J Chain J, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FEC|I Chain I, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|C Chain C, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FED|E Chain E, Structure Of The E203q Mutant Of The Cl-H+ EXCHANGER CLC-
Ec1 From E.Coli
pdb|2FEE|J Chain J, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2FEE|I Chain I, Structure Of The Cl-H+ EXCHANGER CLC-Ec1 From E.Coli In
Nabr
pdb|2EXW|C Chain C, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
pdb|2EXW|E Chain E, Crystal Structure Of A Ecclc-Fab Complex In The Absence Of
Bound Ions
pdb|2EXY|C Chain C, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EXY|E Chain E, Crystal Structure Of The E148q Mutant Of Ecclc, Fab
Complexed In Absence Of Bound Ions
pdb|2EZ0|C Chain C, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
pdb|2EZ0|E Chain E, Crystal Structure Of The S107aE148QY445A MUTANT OF ECCLC,
In Complex With A Fab Fragment
pdb|4FG6|C Chain C, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4FG6|E Chain E, Structure Of Ecclc E148a Mutant In Glutamate
pdb|4ENE|C Chain C, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
pdb|4ENE|E Chain E, Structure Of The N- And C-Terminal Trimmed Clc-Ec1 Cl-H+
ANTIPORTER And Fab Complex
Length = 222
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 47/104 (45%), Gaps = 18/104 (17%)
Query: 203 GGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQ-------WQDLPYISPYEDAFHFAP 255
GG L+ + G L+ S GFD + M+WV Q W + I+P ++ P
Sbjct: 8 GGGLV--QPGGSLKLSCA-ASGFDYSRYWMSWVRQAPGKGLKW--IGEINPVSSTINYTP 62
Query: 256 SGDLAEKWAVA--VLHELLWLLVSKKTERDN--LFCLGDYLGFG 295
S L +K+ ++ + L+L +SK D +C Y G+G
Sbjct: 63 S--LKDKFIISRDNAKDTLYLQISKVRSEDTALYYCARLYYGYG 104
>pdb|2INY|A Chain A, Nanoporous Crystals Of Chicken Embryo Lethal Orphan (celo)
Adenovirus Major Coat Protein, Hexon
Length = 942
Score = 28.5 bits (62), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 287 CLGDYLGFGDRFKRALRHHPGIFYVSNKIRTQ----TVVLREAYRKDFLVERHPLMGM-- 340
C +Y+GF D F L H G+ S + ++ VV+ R L ++ L M
Sbjct: 286 CRPNYIGFRDNFINLLYHDSGV--CSGTLNSERSGMNVVVELQDRNTELSYQYMLADMMS 343
Query: 341 RHRYIHLMNKSNDR 354
RH Y L N++ D+
Sbjct: 344 RHHYFALWNQAVDQ 357
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,044,844
Number of Sequences: 62578
Number of extensions: 434102
Number of successful extensions: 1222
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1218
Number of HSP's gapped (non-prelim): 9
length of query: 397
length of database: 14,973,337
effective HSP length: 101
effective length of query: 296
effective length of database: 8,652,959
effective search space: 2561275864
effective search space used: 2561275864
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 52 (24.6 bits)