Query         015985
Match_columns 397
No_of_seqs    121 out of 173
Neff          5.0 
Searched_HMMs 46136
Date          Fri Mar 29 02:44:31 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015985.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/015985hhsearch_cdd -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 PF11955 PORR:  Plant organelle 100.0  3E-115  6E-120  867.2  27.9  323   30-354     1-333 (335)
  2 PF11955 PORR:  Plant organelle  97.8 1.4E-05   3E-10   80.9   3.3  130   44-175    98-288 (335)
  3 PF12872 OST-HTH:  OST-HTH/LOTU  51.9      26 0.00055   26.9   4.1   49   49-99      7-66  (74)
  4 PHA01746 hypothetical protein   19.8      60  0.0013   28.6   1.4   61   37-97     13-90  (131)
  5 PF14403 CP_ATPgrasp_2:  Circul  19.7 1.4E+02   0.003   32.0   4.4   60  262-325    59-118 (445)
  6 TIGR01889 Staph_reg_Sar staphy  14.3 2.9E+02  0.0062   23.1   4.2   85   35-122    12-102 (109)
  7 PRK10870 transcriptional repre  13.3 4.2E+02  0.0092   24.2   5.4   65   54-121    62-129 (176)
  8 PF10371 EKR:  Domain of unknow  12.8      66  0.0014   25.1  -0.1   21  247-267    39-59  (59)
  9 CHL00104 rpl33 ribosomal prote  11.8 1.1E+02  0.0024   24.4   0.9   15  304-318    26-41  (66)
 10 PF03819 MazG:  MazG nucleotide  11.1 1.1E+02  0.0023   24.0   0.6   13   82-94     62-74  (74)

No 1  
>PF11955 PORR:  Plant organelle RNA recognition domain;  InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=100.00  E-value=2.9e-115  Score=867.15  Aligned_cols=323  Identities=43%  Similarity=0.699  Sum_probs=311.0

Q ss_pred             ccCCchhHHHHHhhhchhHHHHHHHHHhcCCCCceecccccccCCCCCCCCcchhhHHhhCCcceEeccCCCCCCceeec
Q 015985           30 WVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLSSLSLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKL  109 (397)
Q Consensus        30 w~rD~~LD~~v~r~k~lr~v~~lk~li~s~P~~~ipl~~L~k~~~~Lgl~~~~~~~FlrkyP~iF~~~~~~~~~~~~~rL  109 (397)
                      |+||++||++|+++|+++++++|+++|+++|+++||+++|++++++||++++++++||+|||+||++|.++..+++||+|
T Consensus         1 w~rd~~lD~~i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~L   80 (335)
T PF11955_consen    1 WVRDPYLDKVIEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRL   80 (335)
T ss_pred             CCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEe
Confidence            99999999999999999999999999999999999999999999999997689999999999999999988889999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHhhccCCCccchhHHHHhHhhcCCCCCc----ccccCCccCc----Cccc
Q 015985          110 TPQALTLHKEESAIHGLPAQRDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNY----VCEVKDSVAN----KEVL  181 (397)
Q Consensus       110 T~~a~~L~~eE~~v~~~~~~e~~~v~rLrKLLMMS~~~rLpL~ki~~lk~dLGLP~DF----v~~~pd~~~g----~~~~  181 (397)
                      |++|++|++||++++++  +++++|++|+||||||.+++|||++|++++||||||+||    +.++||+|.-    ++..
T Consensus        81 T~~a~~L~~eE~~~~~~--~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~  158 (335)
T PF11955_consen   81 TPEAEDLLREERRVREE--MEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGR  158 (335)
T ss_pred             CHHHHHHHHHHHHHHHh--ChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCC
Confidence            99999999999999999  999999999999999999999999999999999999999    7789999864    3468


Q ss_pred             cEEeeccCCCCcchHHhhhhccC--CccccCCCcccceeeeCCCCCccchHHHHHHHhhhcCCCCCCCCCCCCCCCCCch
Q 015985          182 ALELVSWRKELAVSEMERRSCGG--DLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPYISPYEDAFHFAPSGDL  259 (397)
Q Consensus       182 ~LELv~Wd~~LAVS~lEk~~~~~--~~~~~~~~~~~~Fpv~fp~Gf~l~k~~~~~l~~fQ~LPYiSPYed~~~l~~~S~e  259 (397)
                      +||||+|||+||||++|++++.+  +....+.+++++|||+||+||++++++++|+++||+|||+|||+|+++++++|++
T Consensus       159 ~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~  238 (335)
T PF11955_consen  159 YLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDE  238 (335)
T ss_pred             EEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChH
Confidence            99999999999999999999965  3344567789999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhcchhhhccchhhhhhhhcCCcHHHHHHHhhCCCceEEEeeCCceeEEeeccccCCCccccCchhh
Q 015985          260 AEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMG  339 (397)
Q Consensus       260 ~EKRaVaVlHELLSLTveKr~~v~~L~~Fr~ef~Lp~k~~~~l~rHPgIFYvS~Kg~~~TVfLREAY~~g~Liek~PL~~  339 (397)
                      +|||||||+||||||||||||++++|+|||+|||||++|+++|+|||||||||+||+|+||||||||++|+|||||||+.
T Consensus       239 ~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~~~TVfLrEAY~~~~Liek~Pl~~  318 (335)
T PF11955_consen  239 AEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKGKRHTVFLREAYDGGELIEKHPLVV  318 (335)
T ss_pred             HHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccCCceEEEEeeccCCCCCCCCCchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccc
Q 015985          340 MRHRYIHLMNKSNDR  354 (397)
Q Consensus       340 ~R~k~~~Lm~~g~~~  354 (397)
                      +|+||++||+.|...
T Consensus       319 ~r~k~~~Lm~~~~~~  333 (335)
T PF11955_consen  319 IREKFLELMQEGRRK  333 (335)
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999999999874


No 2  
>PF11955 PORR:  Plant organelle RNA recognition domain;  InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=97.79  E-value=1.4e-05  Score=80.91  Aligned_cols=130  Identities=22%  Similarity=0.322  Sum_probs=96.1

Q ss_pred             hchhHHHHHHHHHhcCCCCceecccccccCCCCCCCCcc-hhhHHhhCCcceEeccCCCCCCceeecCH-----------
Q 015985           44 KNLKQILSFKNQLVHSPSKSLPLSSLSLLKPHLDLPTTT-ALKFFQKYPSFFTLFQPCPSLPLHVKLTP-----------  111 (397)
Q Consensus        44 k~lr~v~~lk~li~s~P~~~ipl~~L~k~~~~Lgl~~~~-~~~FlrkyP~iF~~~~~~~~~~~~~rLT~-----------  111 (397)
                      .....|.+|+.+|-=+.++.||++.+...+.+|||| .+ ..+++.+||..|.+... ..+..++.|..           
T Consensus        98 ~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP-~Df~~~lv~~yP~~Frvv~~-~~~~~~LeLv~Wd~~LAvs~~E  175 (335)
T PF11955_consen   98 MEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLP-DDFRDSLVPKYPDYFRVVDL-EDGGRYLELVSWDPELAVSALE  175 (335)
T ss_pred             ChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCC-hhhccchhhhCCCCcEEeec-CCCCCEEEEeecCCccCcCccc
Confidence            346689999999999999999999999999999999 55 58899999999999652 22223333332           


Q ss_pred             ---------------------------------HHHHHHHHHHHH-------------hCCCCChHHHHHHHHHHhhccC
Q 015985          112 ---------------------------------QALTLHKEESAI-------------HGLPAQRDDAVRRLAKLLMLTN  145 (397)
Q Consensus       112 ---------------------------------~a~~L~~eE~~v-------------~~~~~~e~~~v~rLrKLLMMS~  145 (397)
                                                       ...+-+.+=+++             -.+...|--+|.-+.=||-|+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTv  255 (335)
T PF11955_consen  176 KRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTV  255 (335)
T ss_pred             hhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhh
Confidence                                             111111110000             0111234567889999999999


Q ss_pred             CCccchhHHHHhHhhcCCCCCc---ccccCCcc
Q 015985          146 AGKLPFYVINRFKFDLGLPYNY---VCEVKDSV  175 (397)
Q Consensus       146 ~~rLpL~ki~~lk~dLGLP~DF---v~~~pd~~  175 (397)
                      .+++.+++|.|++++||||..|   +.++|.-|
T Consensus       256 eKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIF  288 (335)
T PF11955_consen  256 EKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIF  288 (335)
T ss_pred             hhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeE
Confidence            9999999999999999999999   77888754


No 3  
>PF12872 OST-HTH:  OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=51.87  E-value=26  Score=26.94  Aligned_cols=49  Identities=10%  Similarity=0.134  Sum_probs=33.6

Q ss_pred             HHHHHHHHhcCCC--Cceeccccccc---------CCCCCCCCcchhhHHhhCCcceEeccC
Q 015985           49 ILSFKNQLVHSPS--KSLPLSSLSLL---------KPHLDLPTTTALKFFQKYPSFFTLFQP   99 (397)
Q Consensus        49 v~~lk~li~s~P~--~~ipl~~L~k~---------~~~Lgl~~~~~~~FlrkyP~iF~~~~~   99 (397)
                      .-.|+++|.+.++  +.++++.|...         -+.+|.  .+...||+..|.+|++-..
T Consensus         7 ~~~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~--~~l~~ll~~~~~~~~i~~~   66 (74)
T PF12872_consen    7 KKLLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGF--SSLSELLESLPDVVEIEER   66 (74)
T ss_dssp             HHHHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTS--SSHHHHHHT-TTTEEEEEE
T ss_pred             HHHHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCC--CcHHHHHHhCCCeEEEeee
Confidence            3456777756654  47998888764         234555  4789999999999999433


No 4  
>PHA01746 hypothetical protein
Probab=19.76  E-value=60  Score=28.65  Aligned_cols=61  Identities=25%  Similarity=0.444  Sum_probs=41.5

Q ss_pred             HHHHHhhhchhHHHHHHHH------HhcCCC--C---ceecccccccCCCCCCCCcc------hhhHHhhCCcceEec
Q 015985           37 DDAVSKEKNLKQILSFKNQ------LVHSPS--K---SLPLSSLSLLKPHLDLPTTT------ALKFFQKYPSFFTLF   97 (397)
Q Consensus        37 D~~v~r~k~lr~v~~lk~l------i~s~P~--~---~ipl~~L~k~~~~Lgl~~~~------~~~FlrkyP~iF~~~   97 (397)
                      |.+.+..+-...+++||.+      |-..|+  +   +|.+..=...++++|.++..      ++.||.||-.-...|
T Consensus        13 dqAk~snk~aSkIlkIKg~~rivlQiNAvP~dg~vr~SMTiHs~nNfkKQIGiTa~DAgdL~lIa~FLeKYS~~LnkY   90 (131)
T PHA01746         13 DQAKESNKIASRILKIKGIKRIVVQLNAVPQDGKIRYSMTIHSQNNFRKQIGITPQDAGDLKLIAEFLEKYSDFLNEY   90 (131)
T ss_pred             HHHHHcCChHHHHheecCcceEEEEeeccCCCCeeEEEEEEecccchhhhcCCCccchhhHHHHHHHHHHHHHHHHHH
Confidence            3444555556666666654      445573  2   68888888899999998533      389999998766543


No 5  
>PF14403 CP_ATPgrasp_2:  Circularly permuted ATP-grasp type 2 
Probab=19.73  E-value=1.4e+02  Score=32.03  Aligned_cols=60  Identities=23%  Similarity=0.233  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhhhcchhhhccchhhhhhhhcCCcHHHHHHHhhCCCceEEEeeCCceeEEeecc
Q 015985          262 KWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHHPGIFYVSNKIRTQTVVLREA  325 (397)
Q Consensus       262 KRaVaVlHELLSLTveKr~~v~~L~~Fr~ef~Lp~k~~~~l~rHPgIFYvS~Kg~~~TVfLREA  325 (397)
                      ++++..++.++. -|.++...+-  .||+-||+|....+++...||.=..+ --.|.=|||.++
T Consensus        59 ~~~~~~l~~i~~-kv~~~~l~d~--~lR~~fg~~~~~e~Li~~dpgy~~~l-p~aR~Dvf~~~~  118 (445)
T PF14403_consen   59 NRIAETLYSILL-KVIRRYLRDP--ELRKLFGFSPEEEELILIDPGYDSPL-PIARLDVFLTED  118 (445)
T ss_pred             HHHHHHHHHHHH-HHHHHHhCCH--HHHHHhCcCHHHHHHhcCCCCCCCcC-cceeeeEEEcCC
Confidence            688999999994 4445555555  99999999999999999999976666 556777777753


No 6  
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=14.32  E-value=2.9e+02  Score=23.05  Aligned_cols=85  Identities=13%  Similarity=0.021  Sum_probs=51.1

Q ss_pred             hhHHHHHhhhchhHH-HHHHHHHh--cCCCCceecccccccCCCCCCCCcch---hhHHhhCCcceEeccCCCCCCceee
Q 015985           35 FLDDAVSKEKNLKQI-LSFKNQLV--HSPSKSLPLSSLSLLKPHLDLPTTTA---LKFFQKYPSFFTLFQPCPSLPLHVK  108 (397)
Q Consensus        35 ~LD~~v~r~k~lr~v-~~lk~li~--s~P~~~ipl~~L~k~~~~Lgl~~~~~---~~FlrkyP~iF~~~~~~~~~~~~~r  108 (397)
                      .++..+...-.+... ..+-..|.  ..+++.++..+|+.   .+++++..+   .+=|.+---|-..-.+...+.-++.
T Consensus        12 ~~~~~l~~~~~ls~~q~~vL~~l~~~~~~~~~~t~~eL~~---~l~~~~stvs~~i~~Le~kg~I~r~~~~~D~R~~~i~   88 (109)
T TIGR01889        12 SLKRYLKKEFNLSLEELLILYYLGKLENNEGKLTLKEIIK---EILIKQSALVKIIKKLSKKGYLSKERSEDDERKVIIS   88 (109)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHhhhccCCcCcHHHHHH---HHCCCHHHHHHHHHHHHHCCCEeccCCcccCCeEEEE
Confidence            344444443344433 34445555  55667788888765   566763334   3444444445554445556789999


Q ss_pred             cCHHHHHHHHHHHH
Q 015985          109 LTPQALTLHKEESA  122 (397)
Q Consensus       109 LT~~a~~L~~eE~~  122 (397)
                      ||++|.+++++=..
T Consensus        89 lT~~G~~~~~~~~~  102 (109)
T TIGR01889        89 INKEQRSKIESLIS  102 (109)
T ss_pred             ECHHHHHHHHHHHH
Confidence            99999999876433


No 7  
>PRK10870 transcriptional repressor MprA; Provisional
Probab=13.29  E-value=4.2e+02  Score=24.18  Aligned_cols=65  Identities=22%  Similarity=0.085  Sum_probs=37.4

Q ss_pred             HHHhcCCCCceecccccccCCCCCCCCcchh---hHHhhCCcceEeccCCCCCCceeecCHHHHHHHHHHH
Q 015985           54 NQLVHSPSKSLPLSSLSLLKPHLDLPTTTAL---KFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEES  121 (397)
Q Consensus        54 ~li~s~P~~~ipl~~L~k~~~~Lgl~~~~~~---~FlrkyP~iF~~~~~~~~~~~~~rLT~~a~~L~~eE~  121 (397)
                      ..|...+++.+..++|++   .+|+++..+.   .=|.+---|=..-.+...+.-++.||++|.+++.+=.
T Consensus        62 ~~L~~~~~~~it~~eLa~---~l~l~~~tvsr~v~rLe~kGlV~R~~~~~DrR~~~v~LT~~G~~~~~~i~  129 (176)
T PRK10870         62 ITLESQENHSIQPSELSC---ALGSSRTNATRIADELEKRGWIERRESDNDRRCLHLQLTEKGHEFLREVL  129 (176)
T ss_pred             HHHhcCCCCCcCHHHHHH---HHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHHHHHHHH
Confidence            334444555666666654   6677633332   2233333333322344557889999999999987743


No 8  
>PF10371 EKR:  Domain of unknown function;  InterPro: IPR019456  EKR is a short, 33 residue, domain found in bacterial and some lower eukaryotic species which lies between a POR (pyruvate ferredoxin/flavodoxin oxidoreductase) domain (IPR019752 from INTERPRO) and the 4Fe-4S binding domain (IPR017896 from INTERPRO). It contains a characteristic EKR sequence motif. The exact function of this domain is not known. ; GO: 0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors, 0055114 oxidation-reduction process; PDB: 2PDA_B 2C3Y_A 2C3P_B 2UZA_A 2C3U_B 2C42_A 1B0P_B 2C3M_A 2C3O_B 1KEK_B ....
Probab=12.81  E-value=66  Score=25.09  Aligned_cols=21  Identities=24%  Similarity=0.251  Sum_probs=8.9

Q ss_pred             CCCCCCCCCCCchhhHHHHHH
Q 015985          247 YEDAFHFAPSGDLAEKWAVAV  267 (397)
Q Consensus       247 Yed~~~l~~~S~e~EKRaVaV  267 (397)
                      +........++-..|||.|||
T Consensus        39 f~~dGt~p~GTa~yEKRgIAv   59 (59)
T PF10371_consen   39 FPPDGTFPTGTAAYEKRGIAV   59 (59)
T ss_dssp             S-TT--B-TTGGGGT-----S
T ss_pred             cCCCCCccCchhHHHhccccC
Confidence            334456677899999999986


No 9  
>CHL00104 rpl33 ribosomal protein L33
Probab=11.82  E-value=1.1e+02  Score=24.42  Aligned_cols=15  Identities=33%  Similarity=0.594  Sum_probs=11.9

Q ss_pred             hCCCce-EEEeeCCce
Q 015985          304 HHPGIF-YVSNKIRTQ  318 (397)
Q Consensus       304 rHPgIF-YvS~Kg~~~  318 (397)
                      .-+|+| |+..|+++.
T Consensus        26 ~~~g~~rY~T~KNkkn   41 (66)
T CHL00104         26 ESTGISRYITQKNRHN   41 (66)
T ss_pred             cCcccceEEECCCCCC
Confidence            458999 999998753


No 10 
>PF03819 MazG:  MazG nucleotide pyrophosphohydrolase domain;  InterPro: IPR004518 This domain is found in a group of prokaryotic proteins which includes Escherichia coli MazG. The domain is about 100 amino acid residues in length and contains four conserved negatively charged residues that probably form an active site or metal binding site.; PDB: 1VMG_A 2YXH_B 2OIE_B 2OIG_C 2Q4P_A 2A3Q_B 2Q9L_C 2Q5Z_B 2Q73_A 3CRC_B ....
Probab=11.13  E-value=1.1e+02  Score=24.04  Aligned_cols=13  Identities=31%  Similarity=0.626  Sum_probs=11.2

Q ss_pred             chhhHHhhCCcce
Q 015985           82 TALKFFQKYPSFF   94 (397)
Q Consensus        82 ~~~~FlrkyP~iF   94 (397)
                      ....+.+|||++|
T Consensus        62 ~~~K~~~R~p~~f   74 (74)
T PF03819_consen   62 KMEKLERRYPHVF   74 (74)
T ss_dssp             HHHHHHHHSGGGG
T ss_pred             HHHHHhccCCCCC
Confidence            3488999999998


Done!