Query 015985
Match_columns 397
No_of_seqs 121 out of 173
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 05:56:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015985.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/015985hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3m66_A Mterf3, mterf domain-co 40.2 7.6 0.00026 36.1 0.7 43 270-314 138-181 (270)
2 3rco_A Tudor domain-containing 38.4 38 0.0013 27.3 4.5 44 50-96 16-69 (89)
3 3eco_A MEPR; mutlidrug efflux 32.7 1.3E+02 0.0043 23.8 7.0 71 50-123 34-107 (139)
4 3m66_A Mterf3, mterf domain-co 31.1 20 0.00068 33.2 2.0 29 282-313 184-212 (270)
5 3s93_A Tudor domain-containing 28.0 60 0.002 26.6 4.1 58 39-99 2-70 (102)
6 3jw4_A Transcriptional regulat 28.0 1.1E+02 0.0039 24.6 6.0 71 50-123 44-117 (148)
7 4fp9_B Mterf domain-containing 20.1 35 0.0012 33.4 1.5 71 283-353 150-228 (335)
8 4b8x_A SCO5413, possible MARR- 18.7 83 0.0028 25.9 3.3 66 52-120 40-108 (147)
9 3nqo_A MARR-family transcripti 17.7 2.6E+02 0.0089 23.8 6.5 70 51-123 45-117 (189)
10 3fm5_A Transcriptional regulat 14.6 2.6E+02 0.0088 22.4 5.4 68 51-122 43-113 (150)
No 1
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=40.25 E-value=7.6 Score=36.07 Aligned_cols=43 Identities=16% Similarity=0.229 Sum_probs=26.9
Q ss_pred HHhhhcchhhhccchhhhhhhhcCCcH-HHHHHHhhCCCceEEEee
Q 015985 270 ELLWLLVSKKTERDNLFCLGDYLGFGD-RFKRALRHHPGIFYVSNK 314 (397)
Q Consensus 270 ELLSLTveKr~~v~~L~~Fr~ef~Lp~-k~~~~l~rHPgIFYvS~K 314 (397)
.+|++.+++- ..++..|.+++|++. .+..++.++|.|+..|.+
T Consensus 138 ~il~~s~e~~--~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~~ 181 (270)
T 3m66_A 138 RLLTGSLEPV--KENMKVYRLELGFKHNEIQHMITRIPKMLTANKM 181 (270)
T ss_dssp GGGTSCSHHH--HHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHH
T ss_pred cceeechHHH--HHHHHHHHHHcCCCHHHHHHHHHhCChhheecHH
Confidence 4444454441 334555677778776 466677888888777763
No 2
>3rco_A Tudor domain-containing protein 7; structural genomics, structural genomics consortium, SGC, HL DNA binding protein; 1.80A {Homo sapiens} PDB: 2lh9_A
Probab=38.42 E-value=38 Score=27.35 Aligned_cols=44 Identities=14% Similarity=0.189 Sum_probs=34.8
Q ss_pred HHHHHHHhcCCCCceeccccccc----------CCCCCCCCcchhhHHhhCCcceEe
Q 015985 50 LSFKNQLVHSPSKSLPLSSLSLL----------KPHLDLPTTTALKFFQKYPSFFTL 96 (397)
Q Consensus 50 ~~lk~li~s~P~~~ipl~~L~k~----------~~~Lgl~~~~~~~FlrkyP~iF~~ 96 (397)
.-|+.+|.|.+++ ++++.|.+- .+.||. ..+.+||+.-|.++.+
T Consensus 16 k~iRslL~S~k~g-vtl~~L~~DYr~l~G~~iP~r~lGy--~sl~~fL~siPdvv~~ 69 (89)
T 3rco_A 16 KMLRAVLQSHKNG-VALPRLQGEYRSLTGDWIPFKQLGF--PTLEAYLRSVPAVVRI 69 (89)
T ss_dssp HHHHHHHHTCTTC-EEHHHHHHHHHHHHSSCCCTTTTTC--SSHHHHHHTCTTTEEE
T ss_pred HHHHHHhhcCCCC-CCHHHHHHHHHHHhCCcCChhhhCc--ccHHHHHhcccCeEEE
Confidence 3467888888875 888888763 356777 4789999999999996
No 3
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=32.66 E-value=1.3e+02 Score=23.83 Aligned_cols=71 Identities=13% Similarity=0.128 Sum_probs=45.0
Q ss_pred HHHHHHHhcCCCCceecccccccCCCCCCCCcch---hhHHhhCCcceEeccCCCCCCceeecCHHHHHHHHHHHHH
Q 015985 50 LSFKNQLVHSPSKSLPLSSLSLLKPHLDLPTTTA---LKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAI 123 (397)
Q Consensus 50 ~~lk~li~s~P~~~ipl~~L~k~~~~Lgl~~~~~---~~FlrkyP~iF~~~~~~~~~~~~~rLT~~a~~L~~eE~~v 123 (397)
..+...|..+|+..++..+|++ .+|+++..+ ..=|.+---|=..-.+...+.-++.||++|.+++.+-...
T Consensus 34 ~~vL~~l~~~~~~~~t~~ela~---~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~ 107 (139)
T 3eco_A 34 GHTLGYLYAHQQDGLTQNDIAK---ALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSI 107 (139)
T ss_dssp HHHHHHHHHSTTTCEEHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCcCHHHHHH---HhCCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHHHHHHHHHHHH
Confidence 4556667777766788888765 567874333 4444555444444344455678999999999998764433
No 4
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=31.12 E-value=20 Score=33.18 Aligned_cols=29 Identities=7% Similarity=0.202 Sum_probs=15.6
Q ss_pred cchhhhhhhhcCCcHHHHHHHhhCCCceEEEe
Q 015985 282 RDNLFCLGDYLGFGDRFKRALRHHPGIFYVSN 313 (397)
Q Consensus 282 v~~L~~Fr~ef~Lp~k~~~~l~rHPgIFYvS~ 313 (397)
..++.-|.+++|++.. .+.++|.+|..|.
T Consensus 184 ~~k~~fL~~~mg~~~~---~i~~~P~~l~~Sl 212 (270)
T 3m66_A 184 TETFDFVHNVMSIPHH---IIVKFPQVFNTRL 212 (270)
T ss_dssp HHHHHHHHTTSCCCHH---HHHHCGGGGGSCH
T ss_pred HHHHHHHHHHhCCCHH---HHHhCchHhhCCH
Confidence 3445555556666653 3455666665553
No 5
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=28.00 E-value=60 Score=26.57 Aligned_cols=58 Identities=10% Similarity=0.162 Sum_probs=40.5
Q ss_pred HHHhhhchhHHH-HHHHHHhcCCCCceeccccccc----------CCCCCCCCcchhhHHhhCCcceEeccC
Q 015985 39 AVSKEKNLKQIL-SFKNQLVHSPSKSLPLSSLSLL----------KPHLDLPTTTALKFFQKYPSFFTLFQP 99 (397)
Q Consensus 39 ~v~r~k~lr~v~-~lk~li~s~P~~~ipl~~L~k~----------~~~Lgl~~~~~~~FlrkyP~iF~~~~~ 99 (397)
.+++++-+..|- -|+.+|.|.++ .++++.|.+- .+.||. ..+.+||+--|.++.+...
T Consensus 2 ~~~~~~~l~~vkk~irslLiS~K~-gvtl~~L~~dYr~~~G~~iP~r~lGy--~sl~~fL~sipdvv~~~~~ 70 (102)
T 3s93_A 2 MSEQERIQECLRKEIRSLLISTKD-GLSPQELEKEYLLMVGNHLPLRILGY--RSTMELVLDMPDVVRVCPG 70 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSS-CBCHHHHHHHHHHHHSSCCCTGGGTC--SSHHHHHHTCTTTEEEECC
T ss_pred CccHHHHHHHHHHHHHHhheeCCC-CcCHHHHHHHHHHHcCCcCCchhcCc--CCHHHHHHcCCCeEEEEec
Confidence 356666665554 36777888776 7788888763 234555 4789999999999987433
No 6
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=27.95 E-value=1.1e+02 Score=24.55 Aligned_cols=71 Identities=10% Similarity=0.043 Sum_probs=35.3
Q ss_pred HHHHHHHhcCCCCceecccccccCCCCCCCCcch---hhHHhhCCcceEeccCCCCCCceeecCHHHHHHHHHHHHH
Q 015985 50 LSFKNQLVHSPSKSLPLSSLSLLKPHLDLPTTTA---LKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAI 123 (397)
Q Consensus 50 ~~lk~li~s~P~~~ipl~~L~k~~~~Lgl~~~~~---~~FlrkyP~iF~~~~~~~~~~~~~rLT~~a~~L~~eE~~v 123 (397)
..+-..|...++..++..+|.+ .+|+++..+ ..=|.+---|=..-.+...+.-++.||++|.++..+-...
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~---~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~ 117 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQ---FFGRRGASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGAALVEEFNNI 117 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHH---C------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCCHHHHHH---HHCCChhHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHHHHHHHHHHH
Confidence 3455556666555678777764 677874344 3333333333333233345678899999999998774433
No 7
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=20.09 E-value=35 Score=33.39 Aligned_cols=71 Identities=14% Similarity=0.076 Sum_probs=42.2
Q ss_pred chhhhhhhhcCCcH-HHHHHHhhCCCceEEEeeCCce-eEEee--ccccCCCccc----cCchhhHHHHHHHHHhhccc
Q 015985 283 DNLFCLGDYLGFGD-RFKRALRHHPGIFYVSNKIRTQ-TVVLR--EAYRKDFLVE----RHPLMGMRHRYIHLMNKSND 353 (397)
Q Consensus 283 ~~L~~Fr~ef~Lp~-k~~~~l~rHPgIFYvS~Kg~~~-TVfLR--EAY~~g~Lie----k~PL~~~R~k~~~Lm~~g~~ 353 (397)
.++..|+..+|++. .+..|+.++|.|+..|...-+. .=||. =+..-..++. ..+|-.||.|+.-|...|.-
T Consensus 150 ~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~L~~K~efLv~~Mgl~~~eIvkP~~l~ySLeRIkpRH~fL~~lG~~ 228 (335)
T 4fp9_B 150 DTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQLEYKFQYAYFRMGIKHPDIVKSEYLQYSLTKIKQRHIYLERLGRY 228 (335)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHHHHHHHHHHHTTTCCCHHHHHHTTGGGSCHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHHHHHHHHHHHHHhCCCHHHccccchhhccHHHHHHHHHHHHHcCCc
Confidence 45566788999977 7888999999999988532100 00000 0011111221 23445788888888777765
No 8
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=18.66 E-value=83 Score=25.93 Aligned_cols=66 Identities=15% Similarity=0.083 Sum_probs=43.9
Q ss_pred HHHHHhcCCCCceecccccccCCCCCCCCcc---hhhHHhhCCcceEeccCCCCCCceeecCHHHHHHHHHH
Q 015985 52 FKNQLVHSPSKSLPLSSLSLLKPHLDLPTTT---ALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEE 120 (397)
Q Consensus 52 lk~li~s~P~~~ipl~~L~k~~~~Lgl~~~~---~~~FlrkyP~iF~~~~~~~~~~~~~rLT~~a~~L~~eE 120 (397)
+-.+|...+++.++.++|.+ .+|+++.. ...-|.+---|=..-.+...+.-++.||++|.+++.+=
T Consensus 40 vL~~L~~~~~~~~t~~eLa~---~l~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~~~~ 108 (147)
T 4b8x_A 40 ALVLLTFSKSGELPMSKIGE---RLMVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREVVEAA 108 (147)
T ss_dssp HHHHHHTSGGGEEEHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHHHHHH
T ss_pred HHHHHHHCCCCCcCHHHHHH---HHCCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHHHHHH
Confidence 44556667777888888764 67787423 35566666666666555566789999999999988653
No 9
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=17.67 E-value=2.6e+02 Score=23.79 Aligned_cols=70 Identities=13% Similarity=0.119 Sum_probs=46.2
Q ss_pred HHHHHHhcCCCCceecccccccCCCCCCCCcch---hhHHhhCCcceEeccCCCCCCceeecCHHHHHHHHHHHHH
Q 015985 51 SFKNQLVHSPSKSLPLSSLSLLKPHLDLPTTTA---LKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAI 123 (397)
Q Consensus 51 ~lk~li~s~P~~~ipl~~L~k~~~~Lgl~~~~~---~~FlrkyP~iF~~~~~~~~~~~~~rLT~~a~~L~~eE~~v 123 (397)
.+...|...|++.+++++|+. .+|+++..+ ..=|.+---|=..-.+...+.-++.||++|.+++.+-...
T Consensus 45 ~vL~~L~~~~~~~~t~~eLa~---~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~ 117 (189)
T 3nqo_A 45 MTILSILHLPEEETTLNNIAR---KMGTSKQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGKKVMVTCSRT 117 (189)
T ss_dssp HHHHHHHHSCGGGCCHHHHHH---HHTSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcCHHHHHH---HHCCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHHHHHHHHH
Confidence 344555666767788888765 667874333 4555555555555445556778999999999998764433
No 10
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=14.57 E-value=2.6e+02 Score=22.37 Aligned_cols=68 Identities=9% Similarity=0.080 Sum_probs=34.4
Q ss_pred HHHHHHhcCCCCceecccccccCCCCCCCCcch---hhHHhhCCcceEeccCCCCCCceeecCHHHHHHHHHHHH
Q 015985 51 SFKNQLVHSPSKSLPLSSLSLLKPHLDLPTTTA---LKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESA 122 (397)
Q Consensus 51 ~lk~li~s~P~~~ipl~~L~k~~~~Lgl~~~~~---~~FlrkyP~iF~~~~~~~~~~~~~rLT~~a~~L~~eE~~ 122 (397)
.+..+|...++. ++..+|.+ .+|+++..+ ..=|.+---|=..-.+...+.-++.||++|.+++.+-..
T Consensus 43 ~vL~~l~~~~~~-~t~~eLa~---~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~ 113 (150)
T 3fm5_A 43 SVLVLACEQAEG-VNQRGVAA---TMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKA 113 (150)
T ss_dssp HHHHHHHHSTTC-CCSHHHHH---HHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCC-cCHHHHHH---HHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHHH
Confidence 344455555543 77777764 567774333 333444433333323334567789999999999876443
Done!