Query 015985
Match_columns 397
No_of_seqs 121 out of 173
Neff 5.0
Searched_HMMs 13730
Date Mon Mar 25 05:56:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/015985.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/015985hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3broa1 a.4.5.28 (A:3-137) Tra 36.4 12 0.00089 28.6 3.4 73 49-124 31-106 (135)
2 d2frha1 a.4.5.28 (A:102-216) P 27.3 23 0.0017 26.7 3.6 63 54-119 40-105 (115)
3 d1hsja1 a.4.5.28 (A:373-487) S 21.4 63 0.0046 24.1 5.1 72 51-125 36-110 (115)
4 d1p4xa2 a.4.5.28 (A:126-250) S 16.5 84 0.0061 23.8 4.9 66 52-120 38-106 (125)
5 d1p4xa1 a.4.5.28 (A:1-125) Sta 14.6 1.7E+02 0.012 21.8 6.3 68 52-122 39-109 (125)
6 d2hr3a1 a.4.5.28 (A:2-146) Pro 11.5 1.6E+02 0.012 22.1 5.2 62 54-119 41-105 (145)
7 d1sfka_ a.190.1.1 (A:) Flavivi 10.6 24 0.0018 25.7 -0.2 19 275-293 47-65 (73)
8 d2fbha1 a.4.5.28 (A:8-144) Tra 10.0 1E+02 0.0075 22.9 3.5 67 51-121 32-101 (137)
9 d2fbka1 a.4.5.28 (A:8-179) Tra 9.9 2E+02 0.015 22.4 5.5 62 57-121 73-137 (172)
10 d1s3ja_ a.4.5.28 (A:) Putative 9.6 2.2E+02 0.016 21.0 5.5 62 54-120 42-106 (143)
No 1
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=36.41 E-value=12 Score=28.61 Aligned_cols=73 Identities=14% Similarity=0.095 Sum_probs=52.9
Q ss_pred HHHHHHHHhcCCCCceecccccccCCCCCCCCc---chhhHHhhCCcceEeccCCCCCCceeecCHHHHHHHHHHHHHh
Q 015985 49 ILSFKNQLVHSPSKSLPLSSLSLLKPHLDLPTT---TALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIH 124 (397)
Q Consensus 49 v~~lk~li~s~P~~~ipl~~L~k~~~~Lgl~~~---~~~~FlrkyP~iF~~~~~~~~~~~~~rLT~~a~~L~~eE~~v~ 124 (397)
-..+-.+|..+|++.++..+|++ .+|+++. ++..-|.+---|-....+...+...+.||++|.+++.+=....
T Consensus 31 q~~vL~~l~~~~~~~it~~ela~---~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~~ 106 (135)
T d3broa1 31 QMTIIDYLSRNKNKEVLQRDLES---EFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIILSYM 106 (135)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCHHHHHH---HHCcCHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHHHHHHHHH
Confidence 34566677788998999988875 5666632 3466677777777776666677899999999999887654433
No 2
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=27.31 E-value=23 Score=26.73 Aligned_cols=63 Identities=13% Similarity=0.095 Sum_probs=45.7
Q ss_pred HHHhcCCCCceecccccccCCCCCCCCc---chhhHHhhCCcceEeccCCCCCCceeecCHHHHHHHHH
Q 015985 54 NQLVHSPSKSLPLSSLSLLKPHLDLPTT---TALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKE 119 (397)
Q Consensus 54 ~li~s~P~~~ipl~~L~k~~~~Lgl~~~---~~~~FlrkyP~iF~~~~~~~~~~~~~rLT~~a~~L~~e 119 (397)
..|..+|++.+++.+|.+ .+++++. +...-|.+---|-..-.+...+.-++.||++|.+.+++
T Consensus 40 ~~l~~~~~~~~t~~~la~---~l~~~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~ 105 (115)
T d2frha1 40 TYISENKEKEYYLKDIIN---HLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIES 105 (115)
T ss_dssp HHHHHTCCSEEEHHHHHH---HSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHH
T ss_pred HHHHcCCCCCCCHHHHHH---HHCCCHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHHHH
Confidence 457778888888888765 6677632 33666666776766555556678999999999998765
No 3
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=21.38 E-value=63 Score=24.10 Aligned_cols=72 Identities=8% Similarity=-0.030 Sum_probs=47.8
Q ss_pred HHHHHHhcCCCCceecccccccCCCCCCCCcch---hhHHhhCCcceEeccCCCCCCceeecCHHHHHHHHHHHHHhC
Q 015985 51 SFKNQLVHSPSKSLPLSSLSLLKPHLDLPTTTA---LKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHG 125 (397)
Q Consensus 51 ~lk~li~s~P~~~ipl~~L~k~~~~Lgl~~~~~---~~FlrkyP~iF~~~~~~~~~~~~~rLT~~a~~L~~eE~~v~~ 125 (397)
.+..+|...++..+++.+|++ .+|+++..+ ..-|.+---|=....+...+.-++.||++|.+++.+-...++
T Consensus 36 ~vL~~l~~~~~~~~t~~ela~---~l~~~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~ 110 (115)
T d1hsja1 36 YILNHILRSESNEISSKEIAK---CSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKLISELE 110 (115)
T ss_dssp HHHHHHHTCSCSEEEHHHHHH---SSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHHHHHHG
T ss_pred HHHHHHHccCCCCcCHHHHHH---HHCCChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHHHHHHHHHH
Confidence 345556666777888888865 777873333 444444444444445556788999999999999976544433
No 4
>d1p4xa2 a.4.5.28 (A:126-250) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=16.49 E-value=84 Score=23.84 Aligned_cols=66 Identities=6% Similarity=-0.014 Sum_probs=42.7
Q ss_pred HHHHHhcCCCCceecccccccCCCCCCCCcch---hhHHhhCCcceEeccCCCCCCceeecCHHHHHHHHHH
Q 015985 52 FKNQLVHSPSKSLPLSSLSLLKPHLDLPTTTA---LKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEE 120 (397)
Q Consensus 52 lk~li~s~P~~~ipl~~L~k~~~~Lgl~~~~~---~~FlrkyP~iF~~~~~~~~~~~~~rLT~~a~~L~~eE 120 (397)
+-..|...++..+++.++++ .+|++...+ ..=|.+---|=..-.+...+.-++.||++|.+++.+=
T Consensus 38 vL~~l~~~~~~~~~~~~ia~---~l~~~~~~vs~~v~~L~~~glV~r~~~~~D~R~v~i~LT~~G~~~~~~l 106 (125)
T d1p4xa2 38 ILAIITSQNKNIVLLKDLIE---TIHHKYPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQDHAEQL 106 (125)
T ss_dssp HHHHHHTTTTCCEEHHHHHH---HSSSCHHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHHHHHHH
T ss_pred HHHHHHHccCCCccHHHHHH---HHCCCcchHHHHHHHHHhccCEeeeecCCCCCeEEEEECHHHHHHHHHH
Confidence 44566666777788887765 677773233 3333344444444445566789999999999988653
No 5
>d1p4xa1 a.4.5.28 (A:1-125) Staphylococcal accessory regulator A homolog, SarS {Staphylococcus aureus [TaxId: 1280]}
Probab=14.64 E-value=1.7e+02 Score=21.77 Aligned_cols=68 Identities=12% Similarity=0.126 Sum_probs=43.1
Q ss_pred HHHHHhcCCCCceecccccccCCCCCCCCcch---hhHHhhCCcceEeccCCCCCCceeecCHHHHHHHHHHHH
Q 015985 52 FKNQLVHSPSKSLPLSSLSLLKPHLDLPTTTA---LKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESA 122 (397)
Q Consensus 52 lk~li~s~P~~~ipl~~L~k~~~~Lgl~~~~~---~~FlrkyP~iF~~~~~~~~~~~~~rLT~~a~~L~~eE~~ 122 (397)
+-..|...|++.+++.+|.+ .+++.+..+ ..=|.+---|=..-.+...+.-.+.||++|.+++.+-..
T Consensus 39 iL~~l~~~~~~~~t~~eia~---~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~~~ 109 (125)
T d1p4xa1 39 LLTYLFHQQENTLPFKKIVS---DLCYKQSDLVQHIKVLVKHSYISKVRSKIDERNTYISISEEQREKIAERVT 109 (125)
T ss_dssp HHHHHHSCSCSEEEHHHHHH---HSSSCGGGTHHHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCcCHHHHHH---HhCCCcchHHHHHHHHHHCCCceeecccCCCCeEEEEECHHHHHHHHHHHH
Confidence 34566677877888888875 555653222 333444444433333445678999999999998876443
No 6
>d2hr3a1 a.4.5.28 (A:2-146) Probable transcriptional regulator PA3067 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=11.45 E-value=1.6e+02 Score=22.07 Aligned_cols=62 Identities=10% Similarity=0.034 Sum_probs=37.5
Q ss_pred HHHhcCCCCceecccccccCCCCCCCCc---chhhHHhhCCcceEeccCCCCCCceeecCHHHHHHHHH
Q 015985 54 NQLVHSPSKSLPLSSLSLLKPHLDLPTT---TALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKE 119 (397)
Q Consensus 54 ~li~s~P~~~ipl~~L~k~~~~Lgl~~~---~~~~FlrkyP~iF~~~~~~~~~~~~~rLT~~a~~L~~e 119 (397)
..|...|+ .+++.+|++ .+|+++. +...-|.+---|=..-.+...+.-++.||++|.+++.+
T Consensus 41 ~~L~~~~g-~~t~~~La~---~~~~~~~~vs~~i~~L~~~glv~r~~~~~DrR~~~i~LT~~G~~~~~~ 105 (145)
T d2hr3a1 41 GAIDRLGG-DVTPSELAA---AERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRRNLYG 105 (145)
T ss_dssp HHHHHTTS-CBCHHHHHH---HTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHHHHHH
T ss_pred HHHHHcCC-CCCHHHHHH---HHCCCHHHHHHHHHHHHHcCCeEeeeCccchhHHHhccCHHHHHHHHH
Confidence 34444554 577777764 6777732 33666666666644434445678999999999998765
No 7
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=10.59 E-value=24 Score=25.71 Aligned_cols=19 Identities=32% Similarity=0.436 Sum_probs=17.1
Q ss_pred cchhhhccchhhhhhhhcC
Q 015985 275 LVSKKTERDNLFCLGDYLG 293 (397)
Q Consensus 275 TveKr~~v~~L~~Fr~ef~ 293 (397)
+|.|...+.+|..|++|.|
T Consensus 47 ~v~K~~A~k~L~~FKKeig 65 (73)
T d1sfka_ 47 SVNKQTAMKHLLSFKKELG 65 (73)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 6789999999999999987
No 8
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=9.98 E-value=1e+02 Score=22.88 Aligned_cols=67 Identities=16% Similarity=0.056 Sum_probs=43.0
Q ss_pred HHHHHHhcCCCCceecccccccCCCCCCCCc---chhhHHhhCCcceEeccCCCCCCceeecCHHHHHHHHHHH
Q 015985 51 SFKNQLVHSPSKSLPLSSLSLLKPHLDLPTT---TALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEES 121 (397)
Q Consensus 51 ~lk~li~s~P~~~ipl~~L~k~~~~Lgl~~~---~~~~FlrkyP~iF~~~~~~~~~~~~~rLT~~a~~L~~eE~ 121 (397)
.+...|...|+ .+++++|+. .+++++. ++..=|.+.--|=..-.+...+.-.+.||++|.+++.+=.
T Consensus 32 ~iL~~l~~~~~-~~t~~~la~---~~~~~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~i~lT~~G~~~~~~~~ 101 (137)
T d2fbha1 32 LVLLHLARHRD-SPTQRELAQ---SVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIE 101 (137)
T ss_dssp HHHHHHHHCSS-CCBHHHHHH---HHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCcHHHHHH---HHCCCHHHHHHHHHHHHHcCCccccCCCCCCCchhhhcCHHHHHHHHHHH
Confidence 33444555665 356666654 6677632 2355555666666555555667889999999999987643
No 9
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=9.92 E-value=2e+02 Score=22.41 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=34.7
Q ss_pred hcCCCCceecccccccCCCCCCCCcch---hhHHhhCCcceEeccCCCCCCceeecCHHHHHHHHHHH
Q 015985 57 VHSPSKSLPLSSLSLLKPHLDLPTTTA---LKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEES 121 (397)
Q Consensus 57 ~s~P~~~ipl~~L~k~~~~Lgl~~~~~---~~FlrkyP~iF~~~~~~~~~~~~~rLT~~a~~L~~eE~ 121 (397)
.+.|...++..+|.+ .+|+++..+ ..=|.+---|-..-.+...+.-.+.||++|.+++.+=.
T Consensus 73 ~~~~~~~lt~~eLa~---~l~i~~~tvsr~l~~Le~~GlV~r~~~~~DrR~~~i~LT~~G~~l~~~~~ 137 (172)
T d2fbka1 73 RSAPPEGLRPTELSA---LAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVTHLL 137 (172)
T ss_dssp HHCCSSCBCHHHHHH---HCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHHHHH
T ss_pred hhCCCCCcCHHHHHH---HHCcCHhHHHHHHHHHHhCCCeeeeccccchhhHHhhcCHHHHHHHHHHH
Confidence 345666678777764 667764333 33334434444433334456789999999999987743
No 10
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=9.55 E-value=2.2e+02 Score=21.01 Aligned_cols=62 Identities=11% Similarity=0.094 Sum_probs=36.4
Q ss_pred HHHhcCCCCceecccccccCCCCCCCCcch---hhHHhhCCcceEeccCCCCCCceeecCHHHHHHHHHH
Q 015985 54 NQLVHSPSKSLPLSSLSLLKPHLDLPTTTA---LKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEE 120 (397)
Q Consensus 54 ~li~s~P~~~ipl~~L~k~~~~Lgl~~~~~---~~FlrkyP~iF~~~~~~~~~~~~~rLT~~a~~L~~eE 120 (397)
..|...+ -+++.+|.+ .+++++..+ ..=|.+---|-..-.+...+.-.+.||++|.+++.+=
T Consensus 42 ~~l~~~~--~~t~~~la~---~~~i~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~~~~ 106 (143)
T d1s3ja_ 42 ASLKKHG--SLKVSEIAE---RMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEV 106 (143)
T ss_dssp HHHHHHS--EEEHHHHHH---HHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHH
T ss_pred HHHHHCC--CCCHHHHHH---HHCcCHHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHHHHH
Confidence 3344433 356666654 566663233 3333344444443344456789999999999988763
Done!